Query 001326
Match_columns 1099
No_of_seqs 963 out of 5710
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 22:23:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.3E-40 1.5E-44 397.2 23.0 299 35-348 131-473 (549)
2 3rgz_A Protein brassinosteroid 100.0 8E-38 2.7E-42 394.7 30.2 421 380-810 104-549 (768)
3 3rgz_A Protein brassinosteroid 100.0 3.8E-38 1.3E-42 397.7 26.5 414 396-818 219-723 (768)
4 3t6q_A CD180 antigen; protein- 100.0 2.7E-36 9.1E-41 372.1 39.1 422 379-810 36-534 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-35 5.4E-40 365.2 34.7 421 380-817 36-538 (606)
6 4eco_A Uncharacterized protein 100.0 1.9E-35 6.5E-40 364.4 23.6 342 464-810 192-598 (636)
7 2z63_A TOLL-like receptor 4, v 100.0 5.4E-34 1.9E-38 348.9 34.0 415 380-810 32-529 (570)
8 4ecn_A Leucine-rich repeat pro 100.0 1.8E-34 6.2E-39 360.9 29.4 342 465-812 435-840 (876)
9 3t6q_A CD180 antigen; protein- 100.0 8.1E-34 2.8E-38 349.9 34.8 420 380-810 61-558 (606)
10 1ziw_A TOLL-like receptor 3; i 100.0 2.9E-33 9.9E-38 349.8 40.2 427 380-817 29-577 (680)
11 3vq2_A TLR4, TOLL-like recepto 100.0 5.3E-34 1.8E-38 351.6 32.6 417 380-812 60-558 (606)
12 4eco_A Uncharacterized protein 100.0 2.8E-35 9.4E-40 362.9 19.6 367 442-813 192-633 (636)
13 3j0a_A TOLL-like receptor 5; m 100.0 6.3E-34 2.1E-38 363.0 31.3 417 380-810 28-537 (844)
14 3sfz_A APAF-1, apoptotic pepti 100.0 3.5E-34 1.2E-38 383.6 25.5 305 27-346 119-452 (1249)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.8E-33 9.7E-38 340.8 29.4 419 380-815 30-488 (549)
16 1ziw_A TOLL-like receptor 3; i 100.0 3.3E-32 1.1E-36 340.3 38.2 425 381-816 78-600 (680)
17 3j0a_A TOLL-like receptor 5; m 100.0 9.4E-33 3.2E-37 352.1 33.4 453 380-853 8-556 (844)
18 1vt4_I APAF-1 related killer D 100.0 5.8E-34 2E-38 344.6 20.4 277 32-339 128-436 (1221)
19 4ecn_A Leucine-rich repeat pro 100.0 5.1E-33 1.7E-37 347.8 29.4 380 433-817 323-823 (876)
20 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-32 6.3E-37 333.6 31.5 457 382-857 11-510 (549)
21 2z63_A TOLL-like receptor 4, v 100.0 1.8E-32 6.2E-37 335.4 30.5 401 380-795 56-535 (570)
22 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-33 8.6E-38 338.7 19.3 413 380-811 25-480 (520)
23 1z6t_A APAF-1, apoptotic prote 100.0 1.8E-32 6.3E-37 336.0 23.9 327 26-372 118-497 (591)
24 2z7x_B TOLL-like receptor 1, v 100.0 4E-31 1.4E-35 319.4 29.5 392 403-817 3-461 (520)
25 1o6v_A Internalin A; bacterial 100.0 1.3E-30 4.3E-35 310.0 30.9 345 398-791 44-388 (466)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.5E-30 8.5E-35 315.2 27.4 411 380-810 56-508 (562)
27 1jl5_A Outer protein YOPM; leu 100.0 6.3E-30 2.2E-34 301.2 28.6 333 435-829 73-405 (454)
28 3v47_A TOLL-like receptor 5B a 100.0 1.5E-29 5.2E-34 300.2 28.6 132 663-794 275-411 (455)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.8E-29 3.4E-33 301.1 34.1 395 399-817 30-490 (562)
30 1o6v_A Internalin A; bacterial 100.0 7.5E-29 2.6E-33 294.7 30.9 342 382-773 52-393 (466)
31 1jl5_A Outer protein YOPM; leu 100.0 2.1E-29 7.2E-34 296.7 25.1 352 433-822 11-379 (454)
32 3v47_A TOLL-like receptor 5B a 100.0 2.4E-28 8.3E-33 289.9 30.7 338 431-768 28-408 (455)
33 4g8a_A TOLL-like receptor 4; l 100.0 3.8E-28 1.3E-32 301.1 32.5 421 380-810 56-578 (635)
34 4fmz_A Internalin; leucine ric 100.0 2.9E-28 9.9E-33 278.1 28.2 299 435-790 46-345 (347)
35 4fmz_A Internalin; leucine ric 100.0 9.3E-28 3.2E-32 274.0 27.1 301 453-810 42-344 (347)
36 2id5_A Lingo-1, leucine rich r 100.0 1.7E-27 5.7E-32 284.4 30.5 310 436-790 14-332 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 7.7E-27 2.6E-31 270.8 26.8 300 453-809 43-349 (390)
38 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-26 4.7E-31 273.0 26.6 307 395-770 37-354 (457)
39 3o6n_A APL1; leucine-rich repe 99.9 1.3E-26 4.3E-31 269.0 25.0 300 434-768 46-352 (390)
40 2id5_A Lingo-1, leucine rich r 99.9 2.3E-26 8E-31 274.4 27.9 295 431-768 30-333 (477)
41 3oja_B Anopheles plasmodium-re 99.9 2.3E-26 8E-31 281.7 27.2 304 453-810 49-356 (597)
42 4g8a_A TOLL-like receptor 4; l 99.9 2E-25 6.8E-30 276.6 33.4 400 380-791 80-580 (635)
43 3oja_B Anopheles plasmodium-re 99.9 2.8E-26 9.5E-31 281.0 24.6 302 433-768 51-358 (597)
44 3bz5_A Internalin-J, INLJ; leu 99.9 6.8E-26 2.3E-30 267.1 25.4 159 636-817 166-325 (457)
45 1xku_A Decorin; proteoglycan, 99.9 4.2E-25 1.4E-29 250.0 27.8 285 434-789 32-330 (330)
46 2ft3_A Biglycan; proteoglycan, 99.9 2.2E-25 7.5E-30 252.4 24.4 284 456-789 34-331 (332)
47 1xku_A Decorin; proteoglycan, 99.9 9.1E-24 3.1E-28 238.9 27.8 287 398-766 29-330 (330)
48 1ogq_A PGIP-2, polygalacturona 99.9 2E-24 6.9E-29 241.9 16.3 247 569-816 50-308 (313)
49 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-24 4.2E-29 243.6 14.3 250 501-795 50-308 (313)
50 2ft3_A Biglycan; proteoglycan, 99.9 3.9E-23 1.3E-27 233.9 25.9 283 401-720 34-330 (332)
51 1z7x_W Ribonuclease inhibitor; 99.9 2E-26 7E-31 273.8 -3.1 358 433-811 3-439 (461)
52 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-22 1.3E-26 241.7 30.0 98 687-792 201-298 (622)
53 4fcg_A Uncharacterized protein 99.9 3.9E-23 1.3E-27 232.9 17.9 210 592-803 81-302 (328)
54 4fcg_A Uncharacterized protein 99.9 9.8E-23 3.3E-27 229.6 18.8 231 434-700 82-314 (328)
55 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-21 3.6E-26 237.9 26.0 124 640-775 181-305 (622)
56 1z7x_W Ribonuclease inhibitor; 99.9 8.3E-25 2.9E-29 259.9 -3.8 342 434-791 29-440 (461)
57 2z80_A TOLL-like receptor 2, v 99.9 2.9E-22 9.9E-27 228.8 16.3 270 436-792 34-315 (353)
58 2z80_A TOLL-like receptor 2, v 99.9 7.7E-22 2.6E-26 225.3 18.8 203 399-656 30-238 (353)
59 3ogk_B Coronatine-insensitive 99.9 1.1E-23 3.7E-28 258.8 2.4 392 393-790 66-525 (592)
60 2z66_A Variable lymphocyte rec 99.9 6.1E-22 2.1E-26 221.4 15.7 245 436-768 10-261 (306)
61 3zyj_A Leucine-rich repeat-con 99.9 1.2E-20 4.2E-25 222.1 25.8 220 569-789 64-290 (440)
62 3zyj_A Leucine-rich repeat-con 99.9 1.3E-20 4.5E-25 221.9 25.5 237 571-810 45-290 (440)
63 3zyi_A Leucine-rich repeat-con 99.9 1.3E-20 4.5E-25 222.7 25.3 235 573-810 58-301 (452)
64 2z66_A Variable lymphocyte rec 99.9 6.4E-21 2.2E-25 213.0 21.3 218 593-810 29-259 (306)
65 3zyi_A Leucine-rich repeat-con 99.9 1.3E-20 4.5E-25 222.7 24.6 158 588-768 143-303 (452)
66 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-20 4.6E-25 208.1 22.4 218 572-791 14-238 (285)
67 3o53_A Protein LRIM1, AGAP0063 99.8 1.5E-22 5.2E-27 227.3 4.0 152 640-792 120-276 (317)
68 3o53_A Protein LRIM1, AGAP0063 99.8 5.2E-21 1.8E-25 214.7 14.2 262 570-858 35-300 (317)
69 1ozn_A Reticulon 4 receptor; N 99.8 2E-20 7E-25 206.6 17.4 208 561-768 23-238 (285)
70 1wwl_A Monocyte differentiatio 99.8 9.7E-22 3.3E-26 220.2 6.5 243 521-791 39-309 (312)
71 1wwl_A Monocyte differentiatio 99.8 6.2E-22 2.1E-26 221.7 4.4 151 592-744 149-308 (312)
72 3ogk_B Coronatine-insensitive 99.8 3.7E-22 1.3E-26 245.0 0.5 383 396-788 108-548 (592)
73 3oja_A Leucine-rich immune mol 99.8 3.2E-20 1.1E-24 220.6 16.8 213 570-791 35-250 (487)
74 3oja_A Leucine-rich immune mol 99.8 2.1E-20 7.2E-25 222.2 12.3 167 616-786 99-270 (487)
75 2z62_A TOLL-like receptor 4, v 99.8 2.1E-19 7.2E-24 197.5 19.1 212 578-791 16-237 (276)
76 2p1m_B Transport inhibitor res 99.8 3.4E-22 1.2E-26 245.5 -5.2 397 393-811 59-518 (594)
77 1p9a_G Platelet glycoprotein I 99.8 1.9E-18 6.5E-23 190.8 21.2 196 589-789 7-206 (290)
78 1p9a_G Platelet glycoprotein I 99.8 3.1E-18 1.1E-22 189.0 21.4 195 570-768 11-208 (290)
79 2p1m_B Transport inhibitor res 99.8 5.2E-21 1.8E-25 235.0 -1.2 360 433-811 66-493 (594)
80 2o6q_A Variable lymphocyte rec 99.8 4.9E-18 1.7E-22 185.8 22.4 195 571-790 18-217 (270)
81 2xwt_C Thyrotropin receptor; s 99.8 1.2E-18 3.9E-23 187.1 16.7 206 561-790 23-238 (239)
82 2z62_A TOLL-like receptor 4, v 99.8 2.1E-18 7.1E-23 189.5 18.4 208 561-768 19-237 (276)
83 1h6u_A Internalin H; cell adhe 99.8 3.5E-18 1.2E-22 190.6 18.3 195 590-795 39-233 (308)
84 2o6q_A Variable lymphocyte rec 99.8 1.4E-17 4.9E-22 182.0 22.3 189 618-810 18-216 (270)
85 1h6u_A Internalin H; cell adhe 99.8 5.7E-18 1.9E-22 188.9 18.2 189 613-810 38-228 (308)
86 2xwt_C Thyrotropin receptor; s 99.8 4.1E-18 1.4E-22 182.7 15.6 194 617-812 32-239 (239)
87 4glp_A Monocyte differentiatio 99.7 7E-18 2.4E-22 188.6 14.6 198 591-791 90-307 (310)
88 3rfs_A Internalin B, repeat mo 99.7 1.8E-17 6.2E-22 181.4 16.3 205 589-803 38-247 (272)
89 4ay9_X Follicle-stimulating ho 99.7 6.1E-17 2.1E-21 184.2 19.1 236 436-696 12-255 (350)
90 3rfs_A Internalin B, repeat mo 99.7 4.7E-17 1.6E-21 178.1 17.2 216 593-817 20-240 (272)
91 2ast_B S-phase kinase-associat 99.7 2.4E-18 8.2E-23 194.9 7.0 196 457-697 49-257 (336)
92 2ca6_A RAN GTPase-activating p 99.7 1.3E-18 4.3E-23 201.2 3.9 127 663-789 159-314 (386)
93 2ca6_A RAN GTPase-activating p 99.7 7E-19 2.4E-23 203.4 1.4 233 578-810 18-314 (386)
94 4glp_A Monocyte differentiatio 99.7 3.1E-17 1.1E-21 183.3 14.2 153 590-744 143-306 (310)
95 2ast_B S-phase kinase-associat 99.7 2.8E-18 9.5E-23 194.4 5.1 226 570-798 71-313 (336)
96 4ay9_X Follicle-stimulating ho 99.7 1.5E-16 5.3E-21 180.9 19.2 224 560-807 20-254 (350)
97 3m19_A Variable lymphocyte rec 99.7 7.1E-16 2.4E-20 166.5 19.1 173 571-768 16-192 (251)
98 3cvr_A Invasion plasmid antige 99.7 3.2E-16 1.1E-20 187.5 17.7 161 616-795 80-247 (571)
99 3goz_A Leucine-rich repeat-con 99.7 4.4E-18 1.5E-22 194.6 1.4 133 640-789 138-295 (362)
100 3cvr_A Invasion plasmid antige 99.7 4.1E-16 1.4E-20 186.5 16.5 186 570-777 60-253 (571)
101 1h6t_A Internalin B; cell adhe 99.7 5.5E-16 1.9E-20 171.2 15.5 170 613-790 43-212 (291)
102 3m19_A Variable lymphocyte rec 99.7 2.5E-15 8.4E-20 162.3 19.4 173 617-792 15-193 (251)
103 3goz_A Leucine-rich repeat-con 99.6 5.4E-17 1.9E-21 185.6 5.8 237 574-810 3-295 (362)
104 1h6t_A Internalin B; cell adhe 99.6 1.1E-15 3.8E-20 168.7 15.8 174 589-771 43-216 (291)
105 1m9s_A Internalin B; cell inva 99.6 6.8E-16 2.3E-20 186.8 12.6 169 614-790 41-209 (605)
106 1xeu_A Internalin C; cellular 99.6 1.5E-15 5.1E-20 164.9 10.7 167 615-790 18-184 (263)
107 1m9s_A Internalin B; cell inva 99.6 4.9E-15 1.7E-19 179.4 14.6 175 588-771 39-213 (605)
108 1dce_A Protein (RAB geranylger 99.6 4.5E-17 1.5E-21 196.0 -4.0 203 570-785 350-567 (567)
109 4ezg_A Putative uncharacterize 99.6 4.4E-15 1.5E-19 153.8 11.1 57 730-788 134-191 (197)
110 2qen_A Walker-type ATPase; unk 99.6 3.2E-14 1.1E-18 161.9 18.8 292 26-340 6-349 (350)
111 2fna_A Conserved hypothetical 99.6 2.3E-14 7.7E-19 163.5 17.4 292 26-339 7-356 (357)
112 3e6j_A Variable lymphocyte rec 99.6 2.9E-14 1E-18 151.3 16.3 148 642-791 21-172 (229)
113 2o6s_A Variable lymphocyte rec 99.6 1.9E-14 6.4E-19 150.5 14.3 177 572-779 10-190 (208)
114 4ezg_A Putative uncharacterize 99.5 2E-14 6.9E-19 148.8 13.2 151 590-768 42-194 (197)
115 2v9t_B SLIT homolog 2 protein 99.5 5.7E-14 1.9E-18 148.0 15.8 145 643-789 14-163 (220)
116 2o6s_A Variable lymphocyte rec 99.5 6.5E-14 2.2E-18 146.4 15.9 167 644-816 11-182 (208)
117 1xeu_A Internalin C; cellular 99.5 1.3E-14 4.3E-19 157.6 9.2 172 591-772 18-189 (263)
118 1w5s_A Origin recognition comp 99.5 9.3E-14 3.2E-18 161.9 17.1 281 28-324 18-371 (412)
119 2v70_A SLIT-2, SLIT homolog 2 99.5 1E-13 3.5E-18 146.1 15.3 144 644-789 15-164 (220)
120 1dce_A Protein (RAB geranylger 99.5 3.3E-16 1.1E-20 188.5 -4.3 119 641-762 442-567 (567)
121 2v9t_B SLIT homolog 2 protein 99.5 1.7E-13 5.7E-18 144.4 15.5 148 572-721 14-163 (220)
122 2xot_A Amphoterin-induced prot 99.5 6.3E-14 2.1E-18 159.9 13.0 177 572-768 21-202 (361)
123 2v70_A SLIT-2, SLIT homolog 2 99.5 3.9E-13 1.3E-17 141.6 15.6 146 572-719 14-162 (220)
124 3e6j_A Variable lymphocyte rec 99.5 5.4E-13 1.9E-17 141.5 16.1 148 572-745 22-172 (229)
125 2xot_A Amphoterin-induced prot 99.5 3E-13 1E-17 154.2 14.0 149 644-795 22-179 (361)
126 2qby_B CDC6 homolog 3, cell di 99.4 1.1E-11 3.7E-16 142.8 25.4 273 31-324 19-339 (384)
127 2ell_A Acidic leucine-rich nuc 99.4 3.6E-13 1.2E-17 135.4 10.1 131 639-771 23-163 (168)
128 2v1u_A Cell division control p 99.4 9.4E-12 3.2E-16 143.5 21.4 309 28-373 15-383 (387)
129 2ell_A Acidic leucine-rich nuc 99.4 5.6E-13 1.9E-17 134.0 9.6 131 590-722 22-159 (168)
130 2qby_A CDC6 homolog 1, cell di 99.4 7E-12 2.4E-16 144.4 18.8 313 28-372 16-380 (386)
131 4b8c_D Glucose-repressible alc 99.4 1.1E-13 3.7E-18 172.0 3.6 113 632-745 216-329 (727)
132 4b8c_D Glucose-repressible alc 99.4 2.7E-13 9.1E-18 168.5 5.1 162 644-809 205-369 (727)
133 2je0_A Acidic leucine-rich nuc 99.3 7.6E-13 2.6E-17 130.1 6.8 103 683-786 38-148 (149)
134 2je0_A Acidic leucine-rich nuc 99.3 2.2E-12 7.4E-17 126.8 7.8 81 592-674 17-99 (149)
135 1fnn_A CDC6P, cell division co 99.3 9.3E-11 3.2E-15 135.2 21.8 303 29-346 14-387 (389)
136 3sb4_A Hypothetical leucine ri 99.3 2.6E-12 8.7E-17 144.6 8.2 97 686-784 225-327 (329)
137 1a9n_A U2A', U2A'; complex (nu 99.3 3.5E-12 1.2E-16 129.2 7.9 58 731-788 87-150 (176)
138 1w8a_A SLIT protein; signaling 99.3 2.5E-11 8.5E-16 124.8 13.5 123 643-789 11-137 (192)
139 1a9n_A U2A', U2A'; complex (nu 99.3 3.4E-12 1.1E-16 129.3 6.2 132 636-769 15-154 (176)
140 1w8a_A SLIT protein; signaling 99.2 3.8E-11 1.3E-15 123.4 13.0 127 572-700 11-139 (192)
141 2wfh_A SLIT homolog 2 protein 99.2 5.4E-11 1.8E-15 122.3 14.0 101 689-789 33-137 (193)
142 2wfh_A SLIT homolog 2 protein 99.2 6.9E-11 2.4E-15 121.4 14.5 123 643-768 13-139 (193)
143 2o6r_A Variable lymphocyte rec 99.2 1.2E-10 4E-15 118.0 14.7 125 643-790 10-136 (177)
144 1njg_A DNA polymerase III subu 99.2 1.6E-10 5.3E-15 123.7 15.0 200 28-240 19-230 (250)
145 1ds9_A Outer arm dynein; leuci 99.2 3.4E-13 1.2E-17 139.6 -6.6 129 654-784 39-180 (198)
146 2o6r_A Variable lymphocyte rec 99.1 4E-10 1.4E-14 114.0 13.8 101 572-674 10-111 (177)
147 1ds9_A Outer arm dynein; leuci 99.1 3.8E-13 1.3E-17 139.3 -9.0 132 632-768 40-185 (198)
148 3sb4_A Hypothetical leucine ri 99.1 1.1E-10 3.7E-15 131.2 10.1 255 432-717 48-328 (329)
149 2chg_A Replication factor C sm 99.1 9.3E-10 3.2E-14 115.8 15.2 188 27-237 12-203 (226)
150 4fs7_A Uncharacterized protein 99.0 1.3E-08 4.3E-13 117.4 23.8 66 387-463 58-125 (394)
151 4fdw_A Leucine rich hypothetic 99.0 2.4E-08 8.3E-13 114.6 23.5 80 705-787 295-379 (401)
152 4fdw_A Leucine rich hypothetic 99.0 1.7E-08 5.8E-13 115.9 21.1 210 434-674 136-356 (401)
153 2r9u_A Variable lymphocyte rec 99.0 2.4E-09 8.4E-14 107.7 11.7 98 690-789 15-116 (174)
154 3g39_A Variable lymphocyte rec 99.0 2.8E-09 9.7E-14 106.9 11.6 100 689-790 11-114 (170)
155 1sxj_B Activator 1 37 kDa subu 98.9 5.1E-09 1.7E-13 117.1 14.8 188 28-239 17-211 (323)
156 2r9u_A Variable lymphocyte rec 98.9 5.4E-09 1.8E-13 105.2 12.3 107 643-772 15-122 (174)
157 3g39_A Variable lymphocyte rec 98.9 6.6E-09 2.3E-13 104.1 12.0 106 642-770 11-117 (170)
158 4fs7_A Uncharacterized protein 98.8 2.4E-07 8.4E-12 106.5 23.9 53 453-508 69-124 (394)
159 1hqc_A RUVB; extended AAA-ATPa 98.8 1.5E-07 5E-12 105.3 19.1 259 27-328 7-302 (324)
160 1iqp_A RFCS; clamp loader, ext 98.8 3.3E-08 1.1E-12 110.7 13.5 188 27-237 20-211 (327)
161 3un9_A NLR family member X1; l 98.7 6.9E-10 2.4E-14 126.2 -1.7 59 731-789 182-250 (372)
162 2ifg_A High affinity nerve gro 98.6 7E-08 2.4E-12 109.1 10.4 98 691-789 12-114 (347)
163 2ra8_A Uncharacterized protein 98.6 3.8E-08 1.3E-12 110.8 6.9 60 730-789 250-318 (362)
164 2chq_A Replication factor C sm 98.6 3.9E-07 1.3E-11 101.5 15.0 184 28-235 13-201 (319)
165 4gt6_A Cell surface protein; l 98.6 5.1E-06 1.8E-10 95.4 24.6 100 683-787 284-387 (394)
166 3un9_A NLR family member X1; l 98.6 1.6E-08 5.4E-13 115.0 3.4 85 662-746 154-253 (372)
167 1jr3_A DNA polymerase III subu 98.5 4.2E-07 1.4E-11 103.8 14.2 197 28-238 12-221 (373)
168 2ifg_A High affinity nerve gro 98.5 2.1E-07 7.2E-12 105.1 10.6 103 573-676 12-116 (347)
169 3d8b_A Fidgetin-like protein 1 98.5 3.6E-06 1.2E-10 95.0 19.8 203 8-239 63-296 (357)
170 4gt6_A Cell surface protein; l 98.5 1.7E-05 5.8E-10 91.0 24.6 124 682-819 260-387 (394)
171 1jbk_A CLPB protein; beta barr 98.4 1.8E-07 6.2E-12 95.5 6.8 52 28-81 18-69 (195)
172 3te6_A Regulatory protein SIR3 98.4 1E-06 3.6E-11 96.2 13.1 168 32-207 20-212 (318)
173 1d2n_A N-ethylmaleimide-sensit 98.4 4.6E-06 1.6E-10 90.4 18.2 201 31-259 32-264 (272)
174 2ra8_A Uncharacterized protein 98.4 1.6E-07 5.5E-12 105.7 6.7 176 591-768 106-320 (362)
175 1sxj_A Activator 1 95 kDa subu 98.4 1.9E-06 6.7E-11 102.3 16.3 193 27-237 34-252 (516)
176 3pfi_A Holliday junction ATP-d 98.4 5.5E-06 1.9E-10 93.0 19.3 264 27-337 24-326 (338)
177 3h4m_A Proteasome-activating n 98.4 1.4E-06 4.6E-11 95.4 13.6 183 27-236 12-229 (285)
178 1sxj_D Activator 1 41 kDa subu 98.4 2.7E-06 9.3E-11 96.1 15.2 198 27-237 32-234 (353)
179 3bos_A Putative DNA replicatio 98.4 5.3E-07 1.8E-11 95.8 8.3 175 30-237 26-216 (242)
180 3b9p_A CG5977-PA, isoform A; A 98.3 1.1E-05 3.9E-10 88.5 18.9 199 14-239 2-234 (297)
181 3eie_A Vacuolar protein sortin 98.3 7.1E-06 2.4E-10 91.2 17.0 186 27-239 13-229 (322)
182 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.1E-05 3.7E-10 86.9 17.2 178 30-232 4-215 (262)
183 1sxj_E Activator 1 40 kDa subu 98.3 2.6E-06 9E-11 96.3 12.4 201 27-236 9-235 (354)
184 2z4s_A Chromosomal replication 98.3 2.1E-06 7.3E-11 99.5 11.4 179 31-235 104-303 (440)
185 2qp9_X Vacuolar protein sortin 98.3 1.1E-05 3.7E-10 90.9 16.4 186 27-239 46-262 (355)
186 4h09_A Hypothetical leucine ri 98.3 0.00012 4.2E-09 83.3 25.4 287 474-786 42-341 (379)
187 1xwi_A SKD1 protein; VPS4B, AA 98.2 3.6E-05 1.2E-09 85.3 19.7 187 27-239 7-224 (322)
188 3uk6_A RUVB-like 2; hexameric 98.2 1.6E-05 5.5E-10 90.3 16.3 201 31-237 43-302 (368)
189 1l8q_A Chromosomal replication 98.2 9.2E-06 3.2E-10 90.5 13.8 179 29-233 8-203 (324)
190 3u61_B DNA polymerase accessor 98.1 2E-05 6.8E-10 87.8 15.3 179 28-233 22-211 (324)
191 2zan_A Vacuolar protein sortin 98.1 4.2E-05 1.4E-09 88.8 18.1 188 27-239 129-346 (444)
192 3cf0_A Transitional endoplasmi 98.1 3.7E-05 1.3E-09 84.4 16.7 178 27-233 10-223 (301)
193 3pvs_A Replication-associated 98.1 1.3E-05 4.4E-10 92.7 13.5 179 27-235 21-212 (447)
194 3vfd_A Spastin; ATPase, microt 98.1 3.9E-05 1.3E-09 87.7 17.0 184 29-239 112-327 (389)
195 2p65_A Hypothetical protein PF 98.1 1.1E-05 3.7E-10 81.6 11.1 51 29-81 19-69 (187)
196 4h09_A Hypothetical leucine ri 98.1 0.00052 1.8E-08 78.1 26.2 109 636-748 236-348 (379)
197 3syl_A Protein CBBX; photosynt 98.1 1.2E-05 4E-10 89.0 11.5 149 33-207 32-218 (309)
198 4b4t_J 26S protease regulatory 97.8 0.0002 6.7E-09 80.2 15.8 176 29-232 145-355 (405)
199 1sxj_C Activator 1 40 kDa subu 97.8 0.00017 6E-09 80.6 15.6 184 28-234 21-208 (340)
200 1a5t_A Delta prime, HOLB; zinc 97.8 0.00021 7.2E-09 79.6 16.0 174 38-238 8-205 (334)
201 1in4_A RUVB, holliday junction 97.8 0.00039 1.3E-08 77.4 17.7 261 28-332 21-318 (334)
202 1io0_A Tropomodulin; LRR prote 97.8 4.5E-06 1.6E-10 84.5 1.3 57 732-788 93-161 (185)
203 3n70_A Transport activator; si 97.8 3E-05 1E-09 75.0 6.9 47 33-79 2-48 (145)
204 3hu3_A Transitional endoplasmi 97.7 0.00016 5.3E-09 84.5 13.2 180 30-237 202-414 (489)
205 4b4t_M 26S protease regulatory 97.7 0.00017 5.8E-09 82.0 12.9 176 27-231 176-387 (434)
206 1io0_A Tropomodulin; LRR prote 97.7 1.8E-05 6.3E-10 80.0 4.4 15 588-602 32-46 (185)
207 4b4t_L 26S protease subunit RP 97.7 0.00038 1.3E-08 79.2 15.5 177 28-232 177-388 (437)
208 2w58_A DNAI, primosome compone 97.7 3.2E-05 1.1E-09 79.5 5.8 61 30-90 23-89 (202)
209 2r62_A Cell division protease 97.7 2.3E-05 7.8E-10 84.6 4.8 156 28-207 7-197 (268)
210 1qvr_A CLPB protein; coiled co 97.7 0.00028 9.6E-09 89.0 15.2 51 29-81 167-217 (854)
211 4b4t_H 26S protease regulatory 97.6 0.001 3.5E-08 75.4 17.7 174 29-231 206-415 (467)
212 3rw6_A Nuclear RNA export fact 97.6 1.5E-05 5E-10 85.0 2.5 77 707-784 167-257 (267)
213 3pxg_A Negative regulator of g 97.6 0.00064 2.2E-08 79.4 16.5 150 30-206 178-338 (468)
214 3ec2_A DNA replication protein 97.6 7.8E-05 2.7E-09 75.0 7.6 50 31-80 9-63 (180)
215 2ce7_A Cell division protein F 97.6 0.00067 2.3E-08 78.5 16.1 175 30-231 14-221 (476)
216 4b4t_I 26S protease regulatory 97.6 0.00042 1.4E-08 77.7 13.7 176 27-231 177-388 (437)
217 4fcw_A Chaperone protein CLPB; 97.6 0.00013 4.5E-09 80.5 9.4 50 32-81 17-73 (311)
218 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00057 1.9E-08 85.4 15.3 155 30-206 184-362 (758)
219 3e4g_A ATP synthase subunit S, 97.5 3.6E-05 1.2E-09 75.9 2.8 85 455-539 61-153 (176)
220 3e4g_A ATP synthase subunit S, 97.5 9.9E-05 3.4E-09 72.8 5.9 96 583-678 52-154 (176)
221 1lv7_A FTSH; alpha/beta domain 97.5 0.0016 5.5E-08 69.5 15.9 155 28-207 8-196 (257)
222 1ofh_A ATP-dependent HSL prote 97.4 0.00034 1.2E-08 77.0 10.3 50 32-81 15-76 (310)
223 2bjv_A PSP operon transcriptio 97.4 0.00013 4.3E-09 78.6 6.1 50 31-80 5-54 (265)
224 3pxi_A Negative regulator of g 97.4 0.0026 8.9E-08 79.2 18.7 150 30-206 178-338 (758)
225 4b4t_K 26S protease regulatory 97.4 0.0013 4.4E-08 74.7 13.8 53 30-82 170-233 (428)
226 3co5_A Putative two-component 97.3 5.1E-05 1.8E-09 73.1 0.9 49 32-80 4-52 (143)
227 3cf2_A TER ATPase, transitiona 97.3 0.00085 2.9E-08 82.1 11.5 175 31-233 203-409 (806)
228 1ojl_A Transcriptional regulat 97.3 0.0003 1E-08 77.1 6.9 48 32-79 2-49 (304)
229 3rw6_A Nuclear RNA export fact 97.2 0.00024 8.3E-09 75.5 5.7 63 616-679 170-236 (267)
230 3t15_A Ribulose bisphosphate c 97.2 0.00072 2.5E-08 73.7 9.2 30 53-82 34-63 (293)
231 3m6a_A ATP-dependent protease 97.2 0.0024 8.3E-08 75.8 14.4 49 34-82 83-135 (543)
232 2gno_A DNA polymerase III, gam 97.2 0.0014 4.7E-08 71.6 11.3 146 36-206 1-152 (305)
233 1ixz_A ATP-dependent metallopr 97.2 0.0046 1.6E-07 65.7 15.2 54 27-80 11-74 (254)
234 1iy2_A ATP-dependent metallopr 97.2 0.0045 1.5E-07 66.8 15.1 54 27-80 35-98 (278)
235 2kjq_A DNAA-related protein; s 97.1 0.00037 1.3E-08 67.3 4.7 36 55-90 36-71 (149)
236 2c9o_A RUVB-like 1; hexameric 97.1 0.0086 2.9E-07 69.6 17.0 50 31-80 36-88 (456)
237 2r44_A Uncharacterized protein 97.0 0.0007 2.4E-08 75.4 6.3 49 30-82 25-73 (331)
238 3pxi_A Negative regulator of g 97.0 0.0024 8.3E-08 79.5 11.7 148 32-206 491-675 (758)
239 2x8a_A Nuclear valosin-contain 97.0 0.015 5.1E-07 62.4 16.4 152 31-206 9-191 (274)
240 1ypw_A Transitional endoplasmi 96.9 0.0018 6.2E-08 80.6 10.1 153 30-207 202-386 (806)
241 2dhr_A FTSH; AAA+ protein, hex 96.8 0.011 3.9E-07 68.6 15.2 173 28-231 27-236 (499)
242 2qgz_A Helicase loader, putati 96.5 0.006 2.1E-07 66.7 9.4 60 30-89 122-187 (308)
243 1r6b_X CLPA protein; AAA+, N-t 96.1 0.0053 1.8E-07 76.5 7.2 49 32-80 458-513 (758)
244 2cvh_A DNA repair and recombin 96.1 0.011 3.7E-07 61.1 8.3 33 55-90 20-52 (220)
245 4a1f_A DNAB helicase, replicat 96.0 0.012 4.3E-07 64.5 8.3 71 35-113 27-97 (338)
246 1vma_A Cell division protein F 95.7 0.06 2.1E-06 58.4 12.3 45 38-82 81-131 (306)
247 3cf2_A TER ATPase, transitiona 95.7 0.013 4.3E-07 71.9 7.5 152 32-208 477-663 (806)
248 2vhj_A Ntpase P4, P4; non- hyd 95.6 0.0083 2.8E-07 64.7 4.9 24 55-78 123-146 (331)
249 2b8t_A Thymidine kinase; deoxy 95.6 0.0047 1.6E-07 63.6 2.8 110 55-175 12-127 (223)
250 1g5t_A COB(I)alamin adenosyltr 95.6 0.02 6.9E-07 57.1 7.0 115 55-174 28-163 (196)
251 3bh0_A DNAB-like replicative h 95.5 0.033 1.1E-06 61.0 9.5 92 10-113 28-119 (315)
252 1qvr_A CLPB protein; coiled co 95.5 0.011 3.8E-07 74.4 6.3 49 33-81 559-614 (854)
253 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.015 5.3E-07 60.5 6.5 35 56-90 24-58 (235)
254 1zu4_A FTSY; GTPase, signal re 95.5 0.023 7.7E-07 62.3 7.8 78 7-89 49-138 (320)
255 3c8u_A Fructokinase; YP_612366 95.2 0.019 6.3E-07 58.9 5.8 41 40-80 7-47 (208)
256 3e70_C DPA, signal recognition 95.2 0.04 1.4E-06 60.5 8.6 74 8-82 69-156 (328)
257 3jvv_A Twitching mobility prot 95.1 0.037 1.3E-06 61.5 8.1 109 56-177 124-234 (356)
258 1pgv_A TMD-1, tropomodulin TMD 95.1 0.013 4.4E-07 58.8 3.8 16 751-766 153-168 (197)
259 3hws_A ATP-dependent CLP prote 95.1 0.016 5.4E-07 65.2 5.1 48 33-80 16-76 (363)
260 2eyu_A Twitching motility prot 95.0 0.021 7.3E-07 60.6 5.7 110 55-176 25-135 (261)
261 3b9q_A Chloroplast SRP recepto 95.0 0.043 1.5E-06 59.5 8.0 79 8-89 46-133 (302)
262 1qhx_A CPT, protein (chloramph 95.0 0.011 3.9E-07 58.7 3.1 25 56-80 4-28 (178)
263 2orw_A Thymidine kinase; TMTK, 94.9 0.0038 1.3E-07 62.6 -0.5 109 56-175 4-114 (184)
264 1j8m_F SRP54, signal recogniti 94.9 0.046 1.6E-06 59.1 7.9 83 7-89 41-132 (297)
265 3dm5_A SRP54, signal recogniti 94.8 0.093 3.2E-06 59.6 10.6 29 54-82 99-127 (443)
266 2ga8_A Hypothetical 39.9 kDa p 94.8 0.02 7E-07 62.7 4.9 49 35-83 2-52 (359)
267 1rz3_A Hypothetical protein rb 94.8 0.034 1.2E-06 56.5 6.4 44 37-80 3-47 (201)
268 1pgv_A TMD-1, tropomodulin TMD 94.8 0.026 8.7E-07 56.6 5.1 65 589-653 38-111 (197)
269 3rfe_A Platelet glycoprotein I 94.8 0.038 1.3E-06 51.6 6.0 52 736-789 12-66 (130)
270 3hr8_A Protein RECA; alpha and 94.7 0.085 2.9E-06 58.3 9.6 50 41-90 46-96 (356)
271 3kb2_A SPBC2 prophage-derived 94.7 0.018 6.1E-07 56.7 3.8 25 56-80 2-26 (173)
272 2og2_A Putative signal recogni 94.6 0.057 2E-06 59.8 8.0 79 8-89 103-190 (359)
273 1rj9_A FTSY, signal recognitio 94.6 0.044 1.5E-06 59.5 6.8 36 54-90 101-136 (304)
274 2xxa_A Signal recognition part 94.6 0.1 3.5E-06 59.6 10.2 73 8-82 44-127 (433)
275 1odf_A YGR205W, hypothetical 3 94.6 0.037 1.3E-06 59.6 6.2 31 51-81 27-57 (290)
276 3vaa_A Shikimate kinase, SK; s 94.5 0.019 6.4E-07 58.4 3.6 26 55-80 25-50 (199)
277 3trf_A Shikimate kinase, SK; a 94.5 0.019 6.5E-07 57.4 3.5 25 56-80 6-30 (185)
278 3nbx_X ATPase RAVA; AAA+ ATPas 94.4 0.033 1.1E-06 64.8 5.7 58 12-80 9-66 (500)
279 2px0_A Flagellar biosynthesis 94.4 0.058 2E-06 58.3 7.3 27 54-80 104-130 (296)
280 3lw7_A Adenylate kinase relate 94.4 0.02 6.9E-07 56.5 3.3 22 56-78 2-23 (179)
281 1zuh_A Shikimate kinase; alpha 94.1 0.026 9E-07 55.4 3.6 26 55-80 7-32 (168)
282 1um8_A ATP-dependent CLP prote 94.1 0.031 1E-06 63.2 4.5 49 33-81 22-98 (376)
283 1nks_A Adenylate kinase; therm 94.1 0.043 1.5E-06 55.1 5.1 26 56-81 2-27 (194)
284 3uie_A Adenylyl-sulfate kinase 94.0 0.047 1.6E-06 55.4 5.3 27 54-80 24-50 (200)
285 1sky_E F1-ATPase, F1-ATP synth 94.0 0.11 3.6E-06 59.3 8.6 28 57-84 153-180 (473)
286 3ice_A Transcription terminati 94.0 0.1 3.5E-06 57.4 8.1 26 56-81 175-200 (422)
287 2yhs_A FTSY, cell division pro 94.0 0.072 2.5E-06 61.1 7.1 80 8-90 241-327 (503)
288 1ly1_A Polynucleotide kinase; 93.9 0.033 1.1E-06 55.3 3.8 22 56-77 3-24 (181)
289 3kl4_A SRP54, signal recogniti 93.9 0.1 3.5E-06 59.3 8.1 73 8-82 41-124 (433)
290 1ex7_A Guanylate kinase; subst 93.9 0.022 7.5E-07 56.8 2.3 29 56-84 2-30 (186)
291 2yvu_A Probable adenylyl-sulfa 93.8 0.057 1.9E-06 54.0 5.2 28 54-81 12-39 (186)
292 3sr0_A Adenylate kinase; phosp 93.7 0.056 1.9E-06 55.0 5.2 23 57-79 2-24 (206)
293 2rhm_A Putative kinase; P-loop 93.7 0.04 1.4E-06 55.4 4.1 25 55-79 5-29 (193)
294 1g8p_A Magnesium-chelatase 38 93.7 0.027 9.2E-07 62.9 3.0 52 27-80 19-70 (350)
295 1kag_A SKI, shikimate kinase I 93.7 0.028 9.7E-07 55.4 2.9 25 56-80 5-29 (173)
296 3iij_A Coilin-interacting nucl 93.7 0.027 9.1E-07 56.1 2.7 25 55-79 11-35 (180)
297 1xp8_A RECA protein, recombina 93.7 0.14 4.8E-06 57.0 8.7 53 38-90 56-109 (366)
298 3bgw_A DNAB-like replicative h 93.6 0.1 3.6E-06 59.9 7.8 51 55-112 197-247 (444)
299 1xjc_A MOBB protein homolog; s 93.6 0.05 1.7E-06 53.1 4.3 29 54-82 3-31 (169)
300 1zp6_A Hypothetical protein AT 93.6 0.036 1.2E-06 55.7 3.4 24 55-78 9-32 (191)
301 3io5_A Recombination and repai 93.6 0.15 5E-06 54.8 8.2 34 57-90 30-65 (333)
302 2ze6_A Isopentenyl transferase 93.6 0.042 1.4E-06 58.1 4.0 25 56-80 2-26 (253)
303 2jaq_A Deoxyguanosine kinase; 93.5 0.038 1.3E-06 56.1 3.6 25 57-81 2-26 (205)
304 1via_A Shikimate kinase; struc 93.5 0.038 1.3E-06 54.6 3.4 24 57-80 6-29 (175)
305 1kht_A Adenylate kinase; phosp 93.4 0.044 1.5E-06 54.9 3.8 26 56-81 4-29 (192)
306 1knq_A Gluconate kinase; ALFA/ 93.4 0.05 1.7E-06 53.7 4.1 25 55-79 8-32 (175)
307 3t61_A Gluconokinase; PSI-biol 93.4 0.039 1.3E-06 56.0 3.3 24 56-79 19-42 (202)
308 3tlx_A Adenylate kinase 2; str 93.4 0.054 1.9E-06 56.8 4.5 27 53-79 27-53 (243)
309 1v5w_A DMC1, meiotic recombina 93.4 0.25 8.5E-06 54.7 10.1 47 44-90 111-163 (343)
310 2j37_W Signal recognition part 93.4 0.15 5.3E-06 59.0 8.6 41 42-82 81-128 (504)
311 2ewv_A Twitching motility prot 93.4 0.056 1.9E-06 60.6 4.8 109 54-175 135-245 (372)
312 1kgd_A CASK, peripheral plasma 93.3 0.04 1.4E-06 54.9 3.2 25 56-80 6-30 (180)
313 3rfe_A Platelet glycoprotein I 93.3 0.12 4E-06 48.2 6.2 52 437-489 12-66 (130)
314 2q6t_A DNAB replication FORK h 93.2 0.22 7.4E-06 57.4 9.7 53 55-114 200-253 (444)
315 2iyv_A Shikimate kinase, SK; t 93.2 0.04 1.4E-06 55.0 3.1 24 57-80 4-27 (184)
316 1g41_A Heat shock protein HSLU 93.2 0.067 2.3E-06 60.8 5.2 52 32-83 15-78 (444)
317 1tue_A Replication protein E1; 93.2 0.057 1.9E-06 54.1 4.0 42 39-81 43-84 (212)
318 2pt5_A Shikimate kinase, SK; a 93.2 0.054 1.8E-06 53.0 3.9 24 57-80 2-25 (168)
319 2r6a_A DNAB helicase, replicat 93.2 0.2 6.7E-06 58.0 9.2 50 56-112 204-254 (454)
320 2pt7_A CAG-ALFA; ATPase, prote 93.1 0.11 3.9E-06 57.0 6.8 101 56-175 172-276 (330)
321 1tev_A UMP-CMP kinase; ploop, 93.1 0.058 2E-06 54.2 4.1 24 56-79 4-27 (196)
322 2plr_A DTMP kinase, probable t 93.1 0.083 2.9E-06 53.9 5.3 28 56-83 5-32 (213)
323 4eun_A Thermoresistant glucoki 93.1 0.054 1.9E-06 54.9 3.8 26 54-79 28-53 (200)
324 3cm0_A Adenylate kinase; ATP-b 93.1 0.057 1.9E-06 53.9 3.9 24 56-79 5-28 (186)
325 1e6c_A Shikimate kinase; phosp 93.1 0.04 1.4E-06 54.2 2.7 25 56-80 3-27 (173)
326 1ukz_A Uridylate kinase; trans 93.0 0.062 2.1E-06 54.6 4.2 27 53-79 13-39 (203)
327 1y63_A LMAJ004144AAA protein; 93.0 0.056 1.9E-06 54.0 3.7 24 55-78 10-33 (184)
328 3a00_A Guanylate kinase, GMP k 92.9 0.041 1.4E-06 55.1 2.6 29 56-84 2-30 (186)
329 3tau_A Guanylate kinase, GMP k 92.9 0.046 1.6E-06 55.8 3.0 27 55-81 8-34 (208)
330 2zr9_A Protein RECA, recombina 92.9 0.11 3.8E-06 57.5 6.3 51 40-90 45-96 (349)
331 2bdt_A BH3686; alpha-beta prot 92.9 0.06 2.1E-06 53.9 3.8 22 56-77 3-24 (189)
332 2c95_A Adenylate kinase 1; tra 92.9 0.053 1.8E-06 54.6 3.4 26 55-80 9-34 (196)
333 1uf9_A TT1252 protein; P-loop, 92.8 0.061 2.1E-06 54.5 3.7 26 53-78 6-31 (203)
334 1uj2_A Uridine-cytidine kinase 92.8 0.061 2.1E-06 56.8 3.9 28 53-80 20-47 (252)
335 3tqc_A Pantothenate kinase; bi 92.8 0.096 3.3E-06 57.0 5.4 47 34-80 69-117 (321)
336 2cdn_A Adenylate kinase; phosp 92.8 0.065 2.2E-06 54.3 3.9 26 55-80 20-45 (201)
337 2bwj_A Adenylate kinase 5; pho 92.8 0.058 2E-06 54.5 3.5 25 56-80 13-37 (199)
338 2vli_A Antibiotic resistance p 92.7 0.041 1.4E-06 54.8 2.3 25 56-80 6-30 (183)
339 1qf9_A UMP/CMP kinase, protein 92.7 0.067 2.3E-06 53.6 3.9 26 55-80 6-31 (194)
340 3p32_A Probable GTPase RV1496/ 92.7 0.16 5.3E-06 56.7 7.2 41 42-82 66-106 (355)
341 2qor_A Guanylate kinase; phosp 92.7 0.048 1.7E-06 55.5 2.8 26 55-80 12-37 (204)
342 1nn5_A Similar to deoxythymidy 92.6 0.086 2.9E-06 53.9 4.6 28 55-82 9-36 (215)
343 1cke_A CK, MSSA, protein (cyti 92.6 0.068 2.3E-06 55.3 3.8 25 56-80 6-30 (227)
344 3umf_A Adenylate kinase; rossm 92.5 0.081 2.8E-06 54.1 4.2 27 53-79 27-53 (217)
345 2pbr_A DTMP kinase, thymidylat 92.5 0.073 2.5E-06 53.4 3.8 24 57-80 2-25 (195)
346 2z43_A DNA repair and recombin 92.5 0.15 5.2E-06 56.0 6.7 36 55-90 107-148 (324)
347 2grj_A Dephospho-COA kinase; T 92.5 0.086 2.9E-06 52.9 4.3 26 54-79 11-36 (192)
348 2if2_A Dephospho-COA kinase; a 92.5 0.064 2.2E-06 54.5 3.4 21 57-77 3-23 (204)
349 2j9r_A Thymidine kinase; TK1, 92.5 0.23 7.8E-06 50.2 7.3 110 55-175 28-139 (214)
350 2r2a_A Uncharacterized protein 92.4 0.2 6.9E-06 50.5 6.9 22 57-78 7-28 (199)
351 3ney_A 55 kDa erythrocyte memb 92.4 0.064 2.2E-06 53.9 3.1 27 54-80 18-44 (197)
352 1aky_A Adenylate kinase; ATP:A 92.4 0.063 2.2E-06 55.3 3.2 25 56-80 5-29 (220)
353 1jjv_A Dephospho-COA kinase; P 92.3 0.071 2.4E-06 54.3 3.5 22 56-77 3-24 (206)
354 3tr0_A Guanylate kinase, GMP k 92.3 0.072 2.5E-06 54.1 3.5 24 56-79 8-31 (205)
355 1jr3_D DNA polymerase III, del 92.3 0.98 3.3E-05 49.8 13.1 156 54-236 17-183 (343)
356 1ye8_A Protein THEP1, hypothet 92.3 0.084 2.9E-06 52.3 3.8 24 57-80 2-25 (178)
357 3fwy_A Light-independent proto 92.2 0.12 4E-06 56.4 5.3 30 53-82 46-75 (314)
358 3a4m_A L-seryl-tRNA(SEC) kinas 92.2 0.082 2.8E-06 56.1 3.9 26 55-80 4-29 (260)
359 2v3c_C SRP54, signal recogniti 92.2 0.15 5.2E-06 58.1 6.4 41 42-82 79-126 (432)
360 2wwf_A Thymidilate kinase, put 92.2 0.079 2.7E-06 54.1 3.7 28 55-82 10-37 (212)
361 2dr3_A UPF0273 protein PH0284; 92.2 0.17 5.7E-06 52.9 6.3 35 56-90 24-58 (247)
362 2qt1_A Nicotinamide riboside k 92.2 0.083 2.9E-06 53.8 3.8 27 53-79 19-45 (207)
363 1gvn_B Zeta; postsegregational 92.2 0.12 4.1E-06 55.7 5.2 26 54-79 32-57 (287)
364 2j41_A Guanylate kinase; GMP, 92.2 0.078 2.7E-06 53.9 3.6 24 56-79 7-30 (207)
365 3k1j_A LON protease, ATP-depen 92.1 0.087 3E-06 63.4 4.5 50 30-83 39-88 (604)
366 2bbw_A Adenylate kinase 4, AK4 92.1 0.084 2.9E-06 55.5 3.8 25 55-79 27-51 (246)
367 3asz_A Uridine kinase; cytidin 92.1 0.093 3.2E-06 53.6 4.0 27 54-80 5-31 (211)
368 4gp7_A Metallophosphoesterase; 92.0 0.072 2.5E-06 52.5 2.9 22 55-76 9-30 (171)
369 3nwj_A ATSK2; P loop, shikimat 92.0 0.073 2.5E-06 55.9 3.1 25 56-80 49-73 (250)
370 2z0h_A DTMP kinase, thymidylat 91.9 0.095 3.3E-06 52.7 3.8 25 57-81 2-26 (197)
371 3fb4_A Adenylate kinase; psych 91.8 0.097 3.3E-06 53.7 3.8 23 57-79 2-24 (216)
372 4e22_A Cytidylate kinase; P-lo 91.8 0.086 2.9E-06 55.6 3.4 26 55-80 27-52 (252)
373 2pez_A Bifunctional 3'-phospho 91.7 0.11 3.8E-06 51.4 4.0 26 55-80 5-30 (179)
374 2wsm_A Hydrogenase expression/ 91.6 0.15 5.1E-06 52.4 5.0 45 36-82 13-57 (221)
375 1zd8_A GTP:AMP phosphotransfer 91.6 0.083 2.8E-06 54.7 3.0 24 56-79 8-31 (227)
376 2ffh_A Protein (FFH); SRP54, s 91.6 0.37 1.3E-05 54.5 8.6 29 54-82 97-125 (425)
377 1m7g_A Adenylylsulfate kinase; 91.6 0.12 4E-06 52.9 4.1 26 55-80 25-50 (211)
378 3ake_A Cytidylate kinase; CMP 91.5 0.11 3.9E-06 52.6 3.9 24 57-80 4-27 (208)
379 1lvg_A Guanylate kinase, GMP k 91.4 0.08 2.7E-06 53.6 2.6 25 56-80 5-29 (198)
380 3dl0_A Adenylate kinase; phosp 91.4 0.1 3.5E-06 53.5 3.5 23 57-79 2-24 (216)
381 3l0o_A Transcription terminati 91.4 0.36 1.2E-05 53.1 7.7 26 56-81 176-201 (427)
382 1gtv_A TMK, thymidylate kinase 91.3 0.074 2.5E-06 54.4 2.3 25 57-81 2-26 (214)
383 3d3q_A TRNA delta(2)-isopenten 91.3 0.11 3.9E-06 56.6 3.9 25 56-80 8-32 (340)
384 1zak_A Adenylate kinase; ATP:A 91.3 0.097 3.3E-06 54.0 3.2 25 56-80 6-30 (222)
385 4a74_A DNA repair and recombin 91.3 0.18 6.1E-06 52.1 5.3 26 54-79 24-49 (231)
386 1cr0_A DNA primase/helicase; R 91.3 0.32 1.1E-05 52.5 7.5 35 56-90 36-71 (296)
387 2hf9_A Probable hydrogenase ni 91.2 0.25 8.6E-06 50.8 6.3 40 41-82 26-65 (226)
388 2p5t_B PEZT; postsegregational 91.2 0.14 4.7E-06 54.1 4.2 27 54-80 31-57 (253)
389 2f6r_A COA synthase, bifunctio 91.1 0.12 4E-06 55.6 3.7 25 53-77 73-97 (281)
390 2jeo_A Uridine-cytidine kinase 91.1 0.12 4.2E-06 54.1 3.8 26 54-79 24-49 (245)
391 2ehv_A Hypothetical protein PH 91.1 0.27 9.3E-06 51.4 6.6 35 56-90 31-66 (251)
392 1tf7_A KAIC; homohexamer, hexa 91.1 0.47 1.6E-05 55.9 9.3 36 55-90 281-316 (525)
393 2ck3_D ATP synthase subunit be 91.1 0.44 1.5E-05 54.1 8.4 52 56-111 154-206 (482)
394 2v54_A DTMP kinase, thymidylat 91.1 0.11 3.6E-06 52.7 3.2 24 56-79 5-28 (204)
395 3r20_A Cytidylate kinase; stru 91.0 0.13 4.3E-06 53.3 3.7 25 56-80 10-34 (233)
396 3aez_A Pantothenate kinase; tr 91.0 0.14 4.8E-06 55.7 4.2 29 53-81 88-116 (312)
397 2i1q_A DNA repair and recombin 91.0 0.32 1.1E-05 53.3 7.2 37 43-79 86-122 (322)
398 1u94_A RECA protein, recombina 91.0 0.28 9.4E-06 54.4 6.6 51 40-90 47-98 (356)
399 1vht_A Dephospho-COA kinase; s 91.0 0.14 4.7E-06 52.6 3.9 23 55-77 4-26 (218)
400 3be4_A Adenylate kinase; malar 90.8 0.12 4.2E-06 53.0 3.4 24 56-79 6-29 (217)
401 1htw_A HI0065; nucleotide-bind 90.8 0.15 5E-06 49.4 3.6 26 54-79 32-57 (158)
402 1ak2_A Adenylate kinase isoenz 90.8 0.13 4.6E-06 53.4 3.7 25 56-80 17-41 (233)
403 3a8t_A Adenylate isopentenyltr 90.8 0.1 3.5E-06 56.8 2.8 26 55-80 40-65 (339)
404 1znw_A Guanylate kinase, GMP k 90.8 0.13 4.4E-06 52.4 3.4 25 56-80 21-45 (207)
405 2xb4_A Adenylate kinase; ATP-b 90.7 0.14 4.9E-06 52.7 3.8 23 57-79 2-24 (223)
406 3crm_A TRNA delta(2)-isopenten 90.7 0.12 4.2E-06 56.0 3.3 25 56-80 6-30 (323)
407 1n0w_A DNA repair protein RAD5 90.7 0.2 7E-06 52.2 5.0 36 55-90 24-65 (243)
408 1e4v_A Adenylate kinase; trans 90.6 0.14 4.9E-06 52.3 3.7 23 57-79 2-24 (214)
409 1np6_A Molybdopterin-guanine d 90.6 0.19 6.5E-06 49.4 4.3 27 55-81 6-32 (174)
410 1svm_A Large T antigen; AAA+ f 90.5 0.18 6.2E-06 56.2 4.6 29 52-80 166-194 (377)
411 2i3b_A HCR-ntpase, human cance 90.4 0.14 4.8E-06 51.2 3.3 24 57-80 3-26 (189)
412 1fx0_B ATP synthase beta chain 90.4 0.23 8E-06 56.6 5.4 52 56-111 166-218 (498)
413 1z6g_A Guanylate kinase; struc 90.3 0.13 4.4E-06 52.9 3.0 25 55-79 23-47 (218)
414 1q57_A DNA primase/helicase; d 90.2 0.82 2.8E-05 53.5 10.2 53 55-114 242-295 (503)
415 1nlf_A Regulatory protein REPA 90.2 0.46 1.6E-05 50.8 7.4 25 56-80 31-55 (279)
416 2r8r_A Sensor protein; KDPD, P 90.2 0.31 1.1E-05 49.7 5.6 27 56-82 7-33 (228)
417 3exa_A TRNA delta(2)-isopenten 90.1 0.17 5.7E-06 54.4 3.6 24 56-79 4-27 (322)
418 1u0j_A DNA replication protein 90.1 0.25 8.7E-06 51.8 5.0 36 44-79 93-128 (267)
419 1s96_A Guanylate kinase, GMP k 89.9 0.17 5.9E-06 51.9 3.5 26 55-80 16-41 (219)
420 1yrb_A ATP(GTP)binding protein 89.8 0.3 1E-05 51.6 5.5 27 54-80 13-39 (262)
421 1a7j_A Phosphoribulokinase; tr 89.7 0.097 3.3E-06 56.4 1.5 27 54-80 4-30 (290)
422 3end_A Light-independent proto 89.7 0.28 9.7E-06 53.3 5.3 37 53-89 39-75 (307)
423 2f1r_A Molybdopterin-guanine d 89.6 0.11 3.8E-06 51.0 1.7 26 56-81 3-28 (171)
424 1q3t_A Cytidylate kinase; nucl 89.6 0.19 6.5E-06 52.3 3.6 27 53-79 14-40 (236)
425 1g8f_A Sulfate adenylyltransfe 89.6 0.27 9.2E-06 57.0 5.2 48 34-81 374-421 (511)
426 3e1s_A Exodeoxyribonuclease V, 89.6 0.47 1.6E-05 56.3 7.4 28 56-83 205-232 (574)
427 1cp2_A CP2, nitrogenase iron p 89.4 0.32 1.1E-05 51.7 5.3 34 56-89 2-35 (269)
428 3foz_A TRNA delta(2)-isopenten 89.3 0.21 7.2E-06 53.6 3.7 26 54-79 9-34 (316)
429 1ls1_A Signal recognition part 89.3 0.32 1.1E-05 52.5 5.2 36 54-90 97-132 (295)
430 1ltq_A Polynucleotide kinase; 89.2 0.21 7.2E-06 54.2 3.8 23 56-78 3-25 (301)
431 1sq5_A Pantothenate kinase; P- 89.2 0.23 7.9E-06 54.0 4.1 28 53-80 78-105 (308)
432 3vr4_D V-type sodium ATPase su 89.1 0.48 1.6E-05 53.5 6.5 89 57-148 153-260 (465)
433 3lnc_A Guanylate kinase, GMP k 89.1 0.14 4.9E-06 53.1 2.2 24 56-79 28-52 (231)
434 4eaq_A DTMP kinase, thymidylat 88.9 0.27 9.1E-06 50.9 4.1 28 54-81 25-52 (229)
435 2qmh_A HPR kinase/phosphorylas 88.8 0.21 7.3E-06 49.7 3.1 24 56-79 35-58 (205)
436 2zts_A Putative uncharacterize 88.8 0.52 1.8E-05 49.2 6.4 36 55-90 30-66 (251)
437 2p67_A LAO/AO transport system 88.6 0.56 1.9E-05 51.8 6.7 30 52-81 53-82 (341)
438 2onk_A Molybdate/tungstate ABC 88.6 0.23 8E-06 51.7 3.4 26 53-79 23-48 (240)
439 2qm8_A GTPase/ATPase; G protei 88.5 0.32 1.1E-05 53.5 4.7 38 44-81 44-81 (337)
440 3fdi_A Uncharacterized protein 88.5 0.25 8.6E-06 49.9 3.5 26 56-81 7-32 (201)
441 1ypw_A Transitional endoplasmi 88.5 0.21 7.2E-06 62.0 3.5 53 31-83 476-539 (806)
442 3b85_A Phosphate starvation-in 88.5 0.19 6.5E-06 51.1 2.5 23 56-78 23-45 (208)
443 3tif_A Uncharacterized ABC tra 88.3 0.24 8.1E-06 51.5 3.2 23 56-78 32-54 (235)
444 3zvl_A Bifunctional polynucleo 88.3 0.2 7E-06 57.0 2.9 26 54-79 257-282 (416)
445 2afh_E Nitrogenase iron protei 88.3 0.39 1.3E-05 51.7 5.1 27 56-82 3-29 (289)
446 2axn_A 6-phosphofructo-2-kinas 88.2 0.39 1.3E-05 56.2 5.4 30 54-83 34-63 (520)
447 2pcj_A ABC transporter, lipopr 88.2 0.21 7.1E-06 51.5 2.7 23 56-78 31-53 (224)
448 1oix_A RAS-related protein RAB 88.0 0.34 1.2E-05 48.4 4.1 25 54-78 28-52 (191)
449 2qi9_C Vitamin B12 import ATP- 88.0 0.25 8.7E-06 51.7 3.2 32 56-89 27-58 (249)
450 3eph_A TRNA isopentenyltransfe 87.9 0.3 1E-05 54.5 3.8 25 56-80 3-27 (409)
451 3cmw_A Protein RECA, recombina 87.9 0.45 1.6E-05 62.8 6.1 50 41-90 717-767 (1706)
452 2ocp_A DGK, deoxyguanosine kin 87.9 0.28 9.5E-06 51.2 3.5 26 55-80 2-27 (241)
453 3cmu_A Protein RECA, recombina 87.8 0.38 1.3E-05 64.3 5.4 37 54-90 1426-1462(2050)
454 4hlc_A DTMP kinase, thymidylat 87.7 0.53 1.8E-05 47.7 5.3 29 56-84 3-31 (205)
455 2ged_A SR-beta, signal recogni 87.7 0.46 1.6E-05 47.3 4.9 25 54-78 47-71 (193)
456 2cbz_A Multidrug resistance-as 87.7 0.28 9.4E-06 51.1 3.2 24 56-79 32-55 (237)
457 2wji_A Ferrous iron transport 87.6 0.37 1.3E-05 46.7 4.0 22 56-77 4-25 (165)
458 2d2e_A SUFC protein; ABC-ATPas 87.6 0.29 9.9E-06 51.4 3.4 23 56-78 30-52 (250)
459 3gfo_A Cobalt import ATP-bindi 87.5 0.28 9.5E-06 52.2 3.2 22 56-77 35-56 (275)
460 2f9l_A RAB11B, member RAS onco 87.5 0.3 1E-05 49.1 3.3 24 55-78 5-28 (199)
461 2dyk_A GTP-binding protein; GT 87.5 0.34 1.2E-05 46.4 3.7 23 56-78 2-24 (161)
462 1pzn_A RAD51, DNA repair and r 87.4 0.54 1.8E-05 52.1 5.6 27 53-79 129-155 (349)
463 4edh_A DTMP kinase, thymidylat 87.4 0.56 1.9E-05 47.8 5.3 27 56-82 7-33 (213)
464 2zu0_C Probable ATP-dependent 87.4 0.3 1E-05 51.8 3.4 23 56-78 47-69 (267)
465 3gmt_A Adenylate kinase; ssgci 87.3 0.34 1.2E-05 49.7 3.6 24 56-79 9-32 (230)
466 1ji0_A ABC transporter; ATP bi 87.3 0.27 9.2E-06 51.3 2.9 22 56-77 33-54 (240)
467 1b0u_A Histidine permease; ABC 87.3 0.29 1E-05 51.7 3.2 23 56-78 33-55 (262)
468 1sgw_A Putative ABC transporte 87.2 0.23 7.9E-06 50.7 2.3 23 56-78 36-58 (214)
469 4g1u_C Hemin import ATP-bindin 87.1 0.3 1E-05 51.7 3.2 24 56-79 38-61 (266)
470 1mv5_A LMRA, multidrug resista 87.1 0.3 1E-05 51.1 3.1 22 56-77 29-50 (243)
471 2olj_A Amino acid ABC transpor 87.1 0.27 9.4E-06 51.9 2.9 23 56-78 51-73 (263)
472 4dzz_A Plasmid partitioning pr 87.1 0.48 1.7E-05 47.8 4.7 35 56-90 2-37 (206)
473 1g6h_A High-affinity branched- 87.1 0.28 9.5E-06 51.8 2.9 22 56-77 34-55 (257)
474 3ea0_A ATPase, para family; al 87.1 0.58 2E-05 48.7 5.4 36 54-89 3-40 (245)
475 3cr8_A Sulfate adenylyltranfer 87.0 0.45 1.5E-05 55.9 4.9 27 55-81 369-395 (552)
476 2pze_A Cystic fibrosis transme 87.0 0.28 9.7E-06 50.7 2.9 24 56-79 35-58 (229)
477 4akg_A Glutathione S-transfera 87.0 1.5 5.1E-05 60.9 10.5 151 58-227 1270-1452(2695)
478 2ff7_A Alpha-hemolysin translo 86.9 0.29 9.8E-06 51.3 2.9 22 56-77 36-57 (247)
479 2zej_A Dardarin, leucine-rich 86.9 0.31 1E-05 48.3 3.0 21 57-77 4-24 (184)
480 2v9p_A Replication protein E1; 86.9 0.33 1.1E-05 52.3 3.4 26 54-79 125-150 (305)
481 1vpl_A ABC transporter, ATP-bi 86.8 0.29 1E-05 51.5 2.9 22 56-77 42-63 (256)
482 2h92_A Cytidylate kinase; ross 86.7 0.3 1E-05 50.0 2.9 24 56-79 4-27 (219)
483 2orv_A Thymidine kinase; TP4A 86.7 1.2 4E-05 45.5 7.0 108 55-174 19-126 (234)
484 1z2a_A RAS-related protein RAB 86.5 0.49 1.7E-05 45.6 4.1 24 55-78 5-28 (168)
485 2ghi_A Transport protein; mult 86.5 0.35 1.2E-05 51.1 3.2 24 56-79 47-70 (260)
486 2ce2_X GTPase HRAS; signaling 86.4 0.36 1.2E-05 46.4 3.1 22 57-78 5-26 (166)
487 2wjg_A FEOB, ferrous iron tran 86.4 0.43 1.5E-05 47.2 3.8 23 55-77 7-29 (188)
488 3thx_A DNA mismatch repair pro 86.4 1.2 4E-05 55.8 8.4 22 55-76 662-683 (934)
489 2ixe_A Antigen peptide transpo 86.4 0.32 1.1E-05 51.7 2.9 22 56-77 46-67 (271)
490 2gks_A Bifunctional SAT/APS ki 86.2 0.82 2.8E-05 53.8 6.6 27 55-81 372-398 (546)
491 2yz2_A Putative ABC transporte 86.2 0.33 1.1E-05 51.5 2.9 22 56-77 34-55 (266)
492 2ihy_A ABC transporter, ATP-bi 86.1 0.33 1.1E-05 51.8 2.9 24 56-79 48-71 (279)
493 2nq2_C Hypothetical ABC transp 86.1 0.33 1.1E-05 51.0 2.8 24 56-79 32-55 (253)
494 3con_A GTPase NRAS; structural 86.1 0.4 1.4E-05 47.6 3.3 23 56-78 22-44 (190)
495 1bif_A 6-phosphofructo-2-kinas 86.0 0.6 2E-05 54.1 5.2 29 55-83 39-67 (469)
496 3kta_A Chromosome segregation 86.0 0.39 1.3E-05 47.5 3.2 23 57-79 28-50 (182)
497 1fzq_A ADP-ribosylation factor 86.0 0.58 2E-05 46.1 4.4 25 54-78 15-39 (181)
498 3fkq_A NTRC-like two-domain pr 85.9 0.65 2.2E-05 52.0 5.3 39 52-90 140-179 (373)
499 3ld9_A DTMP kinase, thymidylat 85.7 0.54 1.9E-05 48.1 4.1 28 54-81 20-47 (223)
500 3hdt_A Putative kinase; struct 85.6 0.49 1.7E-05 48.6 3.7 26 55-80 14-39 (223)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.3e-40 Score=397.19 Aligned_cols=299 Identities=18% Similarity=0.154 Sum_probs=240.1
Q ss_pred ccchhhHHHHHHhhcCC-CCCEEEEEEEcCCCCcHHHHHHHHHH----HHhccCceeEEEEeccccccCCCCHHHHHHHH
Q 001326 35 VGLSSRIEKLISLLCVG-FPDFRIVGIWGMAGIGKTTLAGAIFN----LISWEFEGRCFVSNVRVESENGHRLVYLRERV 109 (1099)
Q Consensus 35 vGr~~~~~~l~~~l~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 109 (1099)
|||+.++++|.++|..+ ..++++|+|+|||||||||||+++|+ +++.+|+.++|+. ++... . .++..+++.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~-~-~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTA-P-KSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCS-T-THHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCC-C-CCHHHHHHHH
Confidence 59999999999999754 44689999999999999999999996 7889999999994 43322 1 4688999999
Q ss_pred HHHHhcccc--cccCCC------hhHHHHHHhcCC-eEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCCccccccc
Q 001326 110 LSEIFEENI--KIETPC------LPEYIGERLRRM-KVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRDKWILDNF 180 (1099)
Q Consensus 110 l~~l~~~~~--~~~~~~------~~~~l~~~L~~k-r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~ 180 (1099)
+.++..... .....+ +...+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 999876532 111111 478889999996 999999999999876 3321 2899999999999998877
Q ss_pred C-CCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhcCCCCHHHHHHHHH-HHhc
Q 001326 181 G-VHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLGSFFHQKSKPDWEKALE-KINR 258 (1099)
Q Consensus 181 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~-~l~~ 258 (1099)
+ ... +|+|++|+.+||++||.++||.... .+.+.+++++|+++|+|+|||++++|+.|+.+. .+|...+. .+..
T Consensus 282 ~~~~~--~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~ 357 (549)
T 2a5y_B 282 SQTCE--FIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLES 357 (549)
T ss_dssp CSCEE--EEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHH
T ss_pred CCCCe--EEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhc
Confidence 5 333 7999999999999999999987543 467888999999999999999999999998774 33333333 2333
Q ss_pred CCCchhHHHHhhcccCCChhhhhHHh-----------hhccccccchHhHHHHHhcCC--Cc------------hhhhHH
Q 001326 259 ISDPDIYDVLKISYNDLRPEEKSIFL-----------DIACFVVGEEKDFVTSILEDP--NI------------AHYGLS 313 (1099)
Q Consensus 259 ~~~~~i~~~l~~sy~~L~~~~k~~fl-----------~la~f~~~~~~~~~~~~l~~~--~~------------~~~~l~ 313 (1099)
....++..++++||+.||++.|.||+ |||+||+++.+. +.+|.++ |+ +..+++
T Consensus 358 ~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~ 435 (549)
T 2a5y_B 358 RGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLK 435 (549)
T ss_dssp HCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHH
T ss_pred ccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHH
Confidence 35667899999999999999999999 999999998777 5667666 44 123699
Q ss_pred HHhhccceEEecC---CeEEehHHHHHHHHHHHhhhcc
Q 001326 314 VLIERSLVTISKF---NKIEMHDLLQEMGREIVRQECI 348 (1099)
Q Consensus 314 ~L~~~sLi~~~~~---~~~~mHdll~~~~~~i~~~~~~ 348 (1099)
+|+++||++.... .+|.|||++|++|+.++.+++.
T Consensus 436 ~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 436 RLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 9999999998643 4799999999999999887764
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8e-38 Score=394.74 Aligned_cols=421 Identities=20% Similarity=0.193 Sum_probs=283.2
Q ss_pred EeccCcceeeeeChH--HhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCC-----CC
Q 001326 380 FLNLSKIREIHLNSL--VFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPS-----NF 452 (1099)
Q Consensus 380 ~l~ls~~~~~~l~~~--~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~-----~~ 452 (1099)
.+|++.+.....-+. .|.++++|++|++++|.+. ...+..+....++|++|++++|.+...+. ..
T Consensus 104 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 175 (768)
T 3rgz_A 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--------FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175 (768)
T ss_dssp EEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEE--------CCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTT
T ss_pred EEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccC--------CcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhc
Confidence 456666654433334 7888899999999887642 12233333445679999999998876654 23
Q ss_pred CCCCceEEECCCCCcccccccccccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCCCCccCccccCCCCCCEEEc
Q 001326 453 DLENLIELDLPYSKVEQLWEGEKEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSL 532 (1099)
Q Consensus 453 ~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 532 (1099)
.+++|++|++++|.+..... ...+++|++|++++|.+...+|.+..+++|++|++++|.....+|..++++++|++|++
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp CCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred cCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 78899999999998876543 37889999999999998888888999999999999999988888999999999999999
Q ss_pred CCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCC----CCccEEEecCcCCc-ccCccccCCCCCcEEEeCCcccccc
Q 001326 533 RDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHIS----GNVVELKLFNTPIE-EVPSSIESLPNLKILNLGFCKRLKR 607 (1099)
Q Consensus 533 ~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~----~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~ 607 (1099)
++|.....+|.. .+++|++|++++|.....+|... .+|+.|++++|.+. .+|..++.+++|++|++++|.+.+.
T Consensus 255 s~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 255 SSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp CSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc
Confidence 999776666665 88889999999887555566543 56888888888887 6677788888888888888887777
Q ss_pred cccc-cccCccccEEeccCCCCCCccchhhcCCC-CCCEEEccCCCCc-ccCccccc--CCCCcEEEccCCCCCCccccc
Q 001326 608 VSTG-ICKLKYLRCLYLLDCSDLESFPEILEKME-PLEKLALDRSGIK-ELPSSIEN--LEGLKELQLMCCSKLGSLPES 682 (1099)
Q Consensus 608 l~~~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~-~L~~L~L~~~~l~-~lp~~l~~--l~~L~~L~L~~~~~l~~lp~~ 682 (1099)
+|.. +..+++|++|++++|...+.+|..+..++ +|+.|++++|.++ .+|..+.. +++|+.|++++|...+.+|..
T Consensus 334 ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 413 (768)
T 3rgz_A 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413 (768)
T ss_dssp CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG
T ss_pred CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH
Confidence 7765 77888888888888877666666666655 6666666666554 34444433 455555555555555555555
Q ss_pred ccCCCCCceeecCCCCCc-cCCccccCCCCCcEEEccCCCCCC-CCC-CCCCCCCCEEeccCCCCc-ccccccCCCCCCC
Q 001326 683 LGNLKSLVVLDANRSAIL-QLPSSIADLNKLRELCLSGCRGFA-LPP-LSTLSSLRTLTLSGCGII-EISQDICCLSSLE 758 (1099)
Q Consensus 683 l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~-l~~-l~~l~~L~~L~Ls~~~l~-~l~~~~~~l~sL~ 758 (1099)
+.++++|+.|++++|.+. .+|..+..+++|+.|++++|.+.. +|. +..+++|++|++++|.+. .+|..+..+++|+
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 555555555555555554 345555555555555555555442 222 444555555555555555 3444455555555
Q ss_pred EEEccCCCCc-cccccccCCCCCCEEeecCCCCCCCCCCC---CCCCCeeecccCc
Q 001326 759 SLNLAENNFE-SLPSSISQLSCLRRLCLRNCNMLQSLPEL---PLGLRHLEASNCK 810 (1099)
Q Consensus 759 ~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~sL~~L~i~~c~ 810 (1099)
.|+|++|.++ .+|.++..+++|+.|+|++|+....+|.. .++|+.|++++|+
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 5555555555 45555555555555555555544444432 2445555555544
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.8e-38 Score=397.68 Aligned_cols=414 Identities=21% Similarity=0.244 Sum_probs=318.0
Q ss_pred hcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCCCCCCCceEEECCCCCcc-cccccc
Q 001326 396 FEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSNFDLENLIELDLPYSKVE-QLWEGE 474 (1099)
Q Consensus 396 f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~-~l~~~~ 474 (1099)
|.++++|+.|++++|.+++. ++..+ ...++|++|++++|.+....+...+++|++|+|++|.+. .+|..+
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~--------~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~ 289 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGD--------FSRAI-STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL 289 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSC--------HHHHT-TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCS
T ss_pred cccCCCCCEEECcCCcCCCc--------ccHHH-hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHH
Confidence 56666666666666654321 11122 223457777777777664433346777777777777776 566666
Q ss_pred ccc-CCccEEeccCCCCCCcCCC-CCCCCCccEEEeeCCCCCCccCcc-ccCCCCCCEEEcCCCCCcccCCCCC-CCC-C
Q 001326 475 KEA-FKLKSIDLHQSHNLTRIPK-QSEAPNLERINLWNCKNLLYIPSH-IQNFNNLSMLSLRDCISLSCFPRNI-HFR-S 549 (1099)
Q Consensus 475 ~~l-~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~-~l~-~ 549 (1099)
... ++|++|++++|.+...+|. +..+++|++|++++|.....+|.. ++++++|++|++++|.....+|..+ .+. +
T Consensus 290 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~ 369 (768)
T 3rgz_A 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369 (768)
T ss_dssp CTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTT
T ss_pred HhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcC
Confidence 554 7777777777776655554 577777777777777766566655 7777777777777776555667666 454 7
Q ss_pred CcEEEccCCcCCCCCCCC-----CCCccEEEecCcCCc-ccCccccCCCCCcEEEeCCcccccccccccccCccccEEec
Q 001326 550 PVKIDFSGCVNLTEFPHI-----SGNVVELKLFNTPIE-EVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYL 623 (1099)
Q Consensus 550 L~~L~l~~~~~l~~l~~~-----~~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L 623 (1099)
|+.|++++|.....+|.. ..+++.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 449 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEEC
Confidence 888888777654444433 346888888888887 67888888999999999999888888888999999999999
Q ss_pred cCCCCCCccchhhcCCCCCCEEEccCCCCc-ccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCc-c
Q 001326 624 LDCSDLESFPEILEKMEPLEKLALDRSGIK-ELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAIL-Q 701 (1099)
Q Consensus 624 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~-~ 701 (1099)
++|...+.+|..+..+++|+.|++++|.++ .+|..+.++++|+.|++++|...+.+|..++.+++|++|++++|.+. .
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence 999888888888999999999999999888 67888889999999999999988889988999999999999999887 6
Q ss_pred CCccccCCCCCcEEEccCCCCC-CCC------------------------------------------------------
Q 001326 702 LPSSIADLNKLRELCLSGCRGF-ALP------------------------------------------------------ 726 (1099)
Q Consensus 702 lp~~~~~l~~L~~L~L~~~~~~-~l~------------------------------------------------------ 726 (1099)
+|..+..+++|+.|++++|.+. .+|
T Consensus 530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 609 (768)
T 3rgz_A 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence 7888899999999999888643 111
Q ss_pred -----------------CCCCCCCCCEEeccCCCCc-ccccccCCCCCCCEEEccCCCCc-cccccccCCCCCCEEeecC
Q 001326 727 -----------------PLSTLSSLRTLTLSGCGII-EISQDICCLSSLESLNLAENNFE-SLPSSISQLSCLRRLCLRN 787 (1099)
Q Consensus 727 -----------------~l~~l~~L~~L~Ls~~~l~-~l~~~~~~l~sL~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~ 787 (1099)
.+..+++|+.|++++|.++ .+|..++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence 1344678899999999998 58888999999999999999998 8899999999999999999
Q ss_pred CCCCCCCCCCC---CCCCeeecccCcCcccCCCC
Q 001326 788 CNMLQSLPELP---LGLRHLEASNCKRLQSFPES 818 (1099)
Q Consensus 788 c~~l~~lp~l~---~sL~~L~i~~c~~L~~l~~~ 818 (1099)
|+....+|..+ ++|+.|++++|+--..+|..
T Consensus 690 N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp SCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 88888888643 67888999998777777753
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-36 Score=372.14 Aligned_cols=422 Identities=19% Similarity=0.190 Sum_probs=295.9
Q ss_pred EEeccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCC-CC-CCCC
Q 001326 379 MFLNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPS-NF-DLEN 456 (1099)
Q Consensus 379 i~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~-~~-~l~~ 456 (1099)
..+|++.+....+.+.+|.++++|++|++++|.+. .+....+....+|++|++++|.+..+++ .+ .+++
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY---------WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC---------EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccc---------eeChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 35788888888888999999999999999998762 3334444556789999999999998754 45 8999
Q ss_pred ceEEECCCCCcccc-cccccccCCccEEeccCCCCCC-cCCCCCCCCCccEEEeeCCCCCCccCccccCCCCCC--EEEc
Q 001326 457 LIELDLPYSKVEQL-WEGEKEAFKLKSIDLHQSHNLT-RIPKQSEAPNLERINLWNCKNLLYIPSHIQNFNNLS--MLSL 532 (1099)
Q Consensus 457 L~~L~L~~n~i~~l-~~~~~~l~~L~~L~Ls~~~~l~-~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~--~L~L 532 (1099)
|++|+|++|.++.+ +..+..+++|++|++++|.+.. ..|.+..+++|++|++++|......|..++.+++|+ .|++
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence 99999999999988 5778999999999999998766 457777799999999999987766678899999999 8999
Q ss_pred CCCCCcccCCCCCCCCCCcEEEccCCc---------------------------------------------------CC
Q 001326 533 RDCISLSCFPRNIHFRSPVKIDFSGCV---------------------------------------------------NL 561 (1099)
Q Consensus 533 ~~~~~l~~lp~~~~l~~L~~L~l~~~~---------------------------------------------------~l 561 (1099)
++|......|..+....|+.|++++|. .+
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 999776666665555666666665543 11
Q ss_pred CCCCC----CCCCccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccch-hh
Q 001326 562 TEFPH----ISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPE-IL 636 (1099)
Q Consensus 562 ~~l~~----~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~-~l 636 (1099)
+.++. ...+|+.|++++|.+..+|..+..+++|++|++++|.+....|..+..+++|++|++++|.....++. .+
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 22221 12356666666666666666666666777777776666666566666667777777776666544443 36
Q ss_pred cCCCCCCEEEccCCCCccc---CcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccC--CccccCCCC
Q 001326 637 EKMEPLEKLALDRSGIKEL---PSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQL--PSSIADLNK 711 (1099)
Q Consensus 637 ~~l~~L~~L~L~~~~l~~l---p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l--p~~~~~l~~ 711 (1099)
..+++|++|++++|.++.+ +..+..+++|+.|++++|...+..|..+..+++|+.|++++|.+... +..+..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 6667777777777766644 45566667777777777766666666666677777777777766643 233666677
Q ss_pred CcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCcc--cc--cccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEe
Q 001326 712 LRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIE--IS--QDICCLSSLESLNLAENNFESL-PSSISQLSCLRRLC 784 (1099)
Q Consensus 712 L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~--l~--~~~~~l~sL~~L~L~~n~l~~l-p~~l~~l~~L~~L~ 784 (1099)
|+.|++++|.+...++ +..+++|++|++++|.+.. ++ ..+..+++|+.|++++|.++.+ |..+..+++|+.|+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence 7777777776655433 5666777777777776654 22 3466667777777777776644 45666677777777
Q ss_pred ecCCCCCCCCCCCC---CCCCeeecccCc
Q 001326 785 LRNCNMLQSLPELP---LGLRHLEASNCK 810 (1099)
Q Consensus 785 L~~c~~l~~lp~l~---~sL~~L~i~~c~ 810 (1099)
|++|+.....|+.+ .+| .|++++|.
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCCccCcCChhHhCccccc-EEECcCCc
Confidence 77765555444333 344 55556553
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-35 Score=365.23 Aligned_cols=421 Identities=20% Similarity=0.181 Sum_probs=334.9
Q ss_pred EeccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcC-CCCC-CCCCc
Q 001326 380 FLNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSL-PSNF-DLENL 457 (1099)
Q Consensus 380 ~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~l-p~~~-~l~~L 457 (1099)
.++++.+....+...+|.++++|+.|++++|.++ .++...+...++|++|++++|.+..+ |..+ .+++|
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE---------TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---------EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCccc---------ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 4677777777888889999999999999998763 34444445557899999999999988 5556 89999
Q ss_pred eEEECCCCCccccc-ccccccCCccEEeccCCCCCC-cCCC-CCCCCCccEEEeeCCCCCCccCccccCCCCCC----EE
Q 001326 458 IELDLPYSKVEQLW-EGEKEAFKLKSIDLHQSHNLT-RIPK-QSEAPNLERINLWNCKNLLYIPSHIQNFNNLS----ML 530 (1099)
Q Consensus 458 ~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~-~~~~-~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~----~L 530 (1099)
++|+|++|.++.++ ..+..+++|++|++++|.+.. .+|. ++++++|++|++++|......|..++.+.+|+ +|
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence 99999999999887 667999999999999998765 4555 78999999999999987776677777776665 79
Q ss_pred EcCCCCCcccCCCCCCCCCCcEEEccCCcCC-------------------------------------------------
Q 001326 531 SLRDCISLSCFPRNIHFRSPVKIDFSGCVNL------------------------------------------------- 561 (1099)
Q Consensus 531 ~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l------------------------------------------------- 561 (1099)
++++|......+..+...+|+.|+++++...
T Consensus 187 ~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 266 (606)
T 3vq2_A 187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred eccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence 9998854433333345558888888876421
Q ss_pred --------C-CCC--CCCCCccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCC
Q 001326 562 --------T-EFP--HISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLE 630 (1099)
Q Consensus 562 --------~-~l~--~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~ 630 (1099)
. ..| ....+++.|++.++.+..+| .+..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|....
T Consensus 267 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp EECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCE
T ss_pred eccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCcc
Confidence 0 001 12356788899999998888 788889999999999988 7777 45 88999999999986655
Q ss_pred ccchhhcCCCCCCEEEccCCCCccc---CcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCC--cc
Q 001326 631 SFPEILEKMEPLEKLALDRSGIKEL---PSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLP--SS 705 (1099)
Q Consensus 631 ~~~~~l~~l~~L~~L~L~~~~l~~l---p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp--~~ 705 (1099)
.. .+..+++|++|++++|.++.+ |..+..+++|+.|++++|... .+|..+..+++|+.|++++|.+...+ ..
T Consensus 343 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 343 SF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp EC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred ch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhh
Confidence 44 567889999999999988865 778888999999999998854 46677888999999999999988764 47
Q ss_pred ccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCcc--cccccCCCCCCCEEEccCCCCccc-cccccCCCCC
Q 001326 706 IADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIE--ISQDICCLSSLESLNLAENNFESL-PSSISQLSCL 780 (1099)
Q Consensus 706 ~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~--l~~~~~~l~sL~~L~L~~n~l~~l-p~~l~~l~~L 780 (1099)
+..+++|+.|++++|.+....+ +..+++|++|++++|.+.. +|..+..+++|+.|++++|.++.+ |..+..+++|
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 8889999999999998766443 7888999999999999885 677788999999999999998855 5678889999
Q ss_pred CEEeecCCCCCCCCCCC---CCCCCeeecccCcCcccCCC
Q 001326 781 RRLCLRNCNMLQSLPEL---PLGLRHLEASNCKRLQSFPE 817 (1099)
Q Consensus 781 ~~L~L~~c~~l~~lp~l---~~sL~~L~i~~c~~L~~l~~ 817 (1099)
+.|++++|+.....|.. .++|+.|++++|. ++.+|.
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEES
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCH
Confidence 99999998766655643 3678899998885 666654
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-35 Score=364.39 Aligned_cols=342 Identities=13% Similarity=0.163 Sum_probs=185.9
Q ss_pred CCCcccccccccccCCccEEeccCCCCCCc-----------------CCC-CC--CCCCccEEEeeCCCCCCccCccccC
Q 001326 464 YSKVEQLWEGEKEAFKLKSIDLHQSHNLTR-----------------IPK-QS--EAPNLERINLWNCKNLLYIPSHIQN 523 (1099)
Q Consensus 464 ~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~-----------------~~~-~~--~l~~L~~L~L~~~~~l~~lp~~i~~ 523 (1099)
+|+++.+|..+.++++|++|+|++|.+... +|. +. .+++|++|+|++|.....+|..+++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 456777788888888888888888876652 554 56 7888888888888877788888888
Q ss_pred CCCCCEEEcCCCC-Ccc-cCCCCC-CC------CCCcEEEccCCcCCCCCCC-----CCCCccEEEecCcCCc-ccCccc
Q 001326 524 FNNLSMLSLRDCI-SLS-CFPRNI-HF------RSPVKIDFSGCVNLTEFPH-----ISGNVVELKLFNTPIE-EVPSSI 588 (1099)
Q Consensus 524 l~~L~~L~L~~~~-~l~-~lp~~~-~l------~~L~~L~l~~~~~l~~l~~-----~~~~L~~L~l~~~~i~-~lp~~i 588 (1099)
+++|++|++++|. ... .+|..+ .+ ++|+.|++++|..- .+|. ...+|+.|++++|.+. .+| .+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 8888888888876 333 466544 32 66666666664322 4443 1234455555555555 555 45
Q ss_pred cCCCCCcEEEeCCcccccccccccccCcc-ccEEeccCCCCCCccchhhcCCC--CCCEEEccCCCCcc-cCcccc----
Q 001326 589 ESLPNLKILNLGFCKRLKRVSTGICKLKY-LRCLYLLDCSDLESFPEILEKME--PLEKLALDRSGIKE-LPSSIE---- 660 (1099)
Q Consensus 589 ~~l~~L~~L~L~~~~~~~~l~~~l~~l~~-L~~L~L~~~~~~~~~~~~l~~l~--~L~~L~L~~~~l~~-lp~~l~---- 660 (1099)
+.+++|+.|++++|.+. .+|..+..+++ |++|++++|... .+|..+..++ +|+.|++++|.+.. +|..+.
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 55555555555555444 44444555555 555555555444 4444444332 45555555555542 333343
Q ss_pred ---cCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccC--------CCCCcEEEccCCCCCCCCC-C
Q 001326 661 ---NLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIAD--------LNKLRELCLSGCRGFALPP-L 728 (1099)
Q Consensus 661 ---~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~--------l~~L~~L~L~~~~~~~l~~-l 728 (1099)
.+++|+.|++++|.+....+..+..+++|+.|++++|.+..+|..... +++|+.|+|++|.+..+|. +
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 507 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGG
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhh
Confidence 444555555555544422222233455555555555555544433221 1155555555555544443 2
Q ss_pred C--CCCCCCEEeccCCCCcccccccCCCCCCCEEEcc------CCCCc-cccccccCCCCCCEEeecCCCCCCCCCC-CC
Q 001326 729 S--TLSSLRTLTLSGCGIIEISQDICCLSSLESLNLA------ENNFE-SLPSSISQLSCLRRLCLRNCNMLQSLPE-LP 798 (1099)
Q Consensus 729 ~--~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~------~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~-l~ 798 (1099)
. .+++|+.|+|++|.+..+|..+..+++|+.|+|+ +|++. .+|..+..+++|+.|+|++|+. +.+|. .+
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred hhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 2 4555555555555555555555555555555552 23322 4455555555555555555443 44443 33
Q ss_pred CCCCeeecccCc
Q 001326 799 LGLRHLEASNCK 810 (1099)
Q Consensus 799 ~sL~~L~i~~c~ 810 (1099)
++|+.|++++|+
T Consensus 587 ~~L~~L~Ls~N~ 598 (636)
T 4eco_A 587 PNISVLDIKDNP 598 (636)
T ss_dssp TTCCEEECCSCT
T ss_pred CcCCEEECcCCC
Confidence 455555555554
No 7
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.4e-34 Score=348.93 Aligned_cols=415 Identities=23% Similarity=0.211 Sum_probs=299.1
Q ss_pred EeccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCC-CC-CCCCc
Q 001326 380 FLNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPS-NF-DLENL 457 (1099)
Q Consensus 380 ~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~-~~-~l~~L 457 (1099)
.+|++.+....+...+|.++++|+.|++++|.++ .++.+.+...++|++|++++|.+..+|. .+ .+++|
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC---------EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCC---------ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 4677888777888889999999999999998763 3444555556789999999999998885 44 89999
Q ss_pred eEEECCCCCcccccc-cccccCCccEEeccCCCCCC-cCCC-CCCCCCccEEEeeCCCCCCccCccccCCCCC----CEE
Q 001326 458 IELDLPYSKVEQLWE-GEKEAFKLKSIDLHQSHNLT-RIPK-QSEAPNLERINLWNCKNLLYIPSHIQNFNNL----SML 530 (1099)
Q Consensus 458 ~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~~~~l~-~~~~-~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L----~~L 530 (1099)
++|++++|+++.++. .+..+++|++|++++|.+.. .+|. +.++++|++|++++|......+..++.+++| ++|
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence 999999999998876 57899999999999998665 3454 7889999999999998776667788888888 899
Q ss_pred EcCCCCCcccCCCCCCCCCCcEEEccCCcCC-------------------------------------------------
Q 001326 531 SLRDCISLSCFPRNIHFRSPVKIDFSGCVNL------------------------------------------------- 561 (1099)
Q Consensus 531 ~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l------------------------------------------------- 561 (1099)
++++|......|..+...+|+.|+++++..-
T Consensus 183 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred ccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 9999866665565555557888877764110
Q ss_pred ---------CCCCC---CCCCccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCC
Q 001326 562 ---------TEFPH---ISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDL 629 (1099)
Q Consensus 562 ---------~~l~~---~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~ 629 (1099)
...|. ...+++.|+++++.+..+|..+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|...
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSC
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccc
Confidence 00111 1245677777777777777777766 7777777777655 3443 45677777777777665
Q ss_pred CccchhhcCCCCCCEEEccCCCCccc---CcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCC--c
Q 001326 630 ESFPEILEKMEPLEKLALDRSGIKEL---PSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLP--S 704 (1099)
Q Consensus 630 ~~~~~~l~~l~~L~~L~L~~~~l~~l---p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp--~ 704 (1099)
...+. ..+++|+.|++++|.++.. |..+..+++|+.|++++|...+..+. +..+++|+.|++++|.+...+ .
T Consensus 339 ~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 339 NAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp CBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC
T ss_pred ccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh
Confidence 55444 5677777777777777654 55667777777777777765544333 777777777777777776553 3
Q ss_pred cccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCc--ccccccCCCCCCCEEEccCCCCccc-cccccCCCC
Q 001326 705 SIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGII--EISQDICCLSSLESLNLAENNFESL-PSSISQLSC 779 (1099)
Q Consensus 705 ~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~--~l~~~~~~l~sL~~L~L~~n~l~~l-p~~l~~l~~ 779 (1099)
.+..+++|++|++++|.+...++ +..+++|++|++++|.+. .+|..+..+++|+.|++++|.++.+ |..+..+++
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 56777777777777777654433 666777777777777776 3676777777777777777777755 666777777
Q ss_pred CCEEeecCCCCCCCCCCC---CCCCCeeecccCc
Q 001326 780 LRRLCLRNCNMLQSLPEL---PLGLRHLEASNCK 810 (1099)
Q Consensus 780 L~~L~L~~c~~l~~lp~l---~~sL~~L~i~~c~ 810 (1099)
|+.|++++|+.....|.. .++|+.|++++++
T Consensus 496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 777777776443333322 2566667776665
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-34 Score=360.88 Aligned_cols=342 Identities=14% Similarity=0.153 Sum_probs=267.1
Q ss_pred CCcccccccccccCCccEEeccCCCCCC-----------------cCCC-CC--CCCCccEEEeeCCCCCCccCccccCC
Q 001326 465 SKVEQLWEGEKEAFKLKSIDLHQSHNLT-----------------RIPK-QS--EAPNLERINLWNCKNLLYIPSHIQNF 524 (1099)
Q Consensus 465 n~i~~l~~~~~~l~~L~~L~Ls~~~~l~-----------------~~~~-~~--~l~~L~~L~L~~~~~l~~lp~~i~~l 524 (1099)
|+++.+|..+..+++|++|+|++|.+.. .+|. ++ .+++|++|+|++|.....+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 6777799999999999999999998776 2555 56 89999999999999899999999999
Q ss_pred CCCCEEEcCCCCCcc--cCCCCC--------CCCCCcEEEccCCcCCCCCCC-----CCCCccEEEecCcCCcccCcccc
Q 001326 525 NNLSMLSLRDCISLS--CFPRNI--------HFRSPVKIDFSGCVNLTEFPH-----ISGNVVELKLFNTPIEEVPSSIE 589 (1099)
Q Consensus 525 ~~L~~L~L~~~~~l~--~lp~~~--------~l~~L~~L~l~~~~~l~~l~~-----~~~~L~~L~l~~~~i~~lp~~i~ 589 (1099)
++|++|+|++|..+. .+|..+ .+++|+.|++++|..- .+|. ...+|+.|++++|.+..+| .++
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~ 592 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFG 592 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhc
Confidence 999999999997343 466543 3458888988887644 6776 3456788888888888888 788
Q ss_pred CCCCCcEEEeCCcccccccccccccCcc-ccEEeccCCCCCCccchhhcCCCC--CCEEEccCCCCcccC----cccc--
Q 001326 590 SLPNLKILNLGFCKRLKRVSTGICKLKY-LRCLYLLDCSDLESFPEILEKMEP--LEKLALDRSGIKELP----SSIE-- 660 (1099)
Q Consensus 590 ~l~~L~~L~L~~~~~~~~l~~~l~~l~~-L~~L~L~~~~~~~~~~~~l~~l~~--L~~L~L~~~~l~~lp----~~l~-- 660 (1099)
.+++|+.|+|++|.+. .+|..+..+++ |+.|++++|... .+|..+..++. |+.|++++|.+...+ ..+.
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~ 670 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTC
T ss_pred CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccc
Confidence 8888888888888877 77877888888 888888888766 67777766654 888888888876432 2232
Q ss_pred cCCCCcEEEccCCCCCCccccc-ccCCCCCceeecCCCCCccCCccccCC--------CCCcEEEccCCCCCCCCC-CC-
Q 001326 661 NLEGLKELQLMCCSKLGSLPES-LGNLKSLVVLDANRSAILQLPSSIADL--------NKLRELCLSGCRGFALPP-LS- 729 (1099)
Q Consensus 661 ~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~~~i~~lp~~~~~l--------~~L~~L~L~~~~~~~l~~-l~- 729 (1099)
.+++|+.|++++|.+. .+|.. +..+++|+.|++++|.+..+|..+... ++|+.|+|++|.+..+|. +.
T Consensus 671 ~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~ 749 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749 (876)
T ss_dssp CCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred cCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence 3457888888888876 45544 447888888888888888887755442 388888888888877776 43
Q ss_pred -CCCCCCEEeccCCCCcccccccCCCCCCCEEEccC------CCCc-cccccccCCCCCCEEeecCCCCCCCCCC-CCCC
Q 001326 730 -TLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAE------NNFE-SLPSSISQLSCLRRLCLRNCNMLQSLPE-LPLG 800 (1099)
Q Consensus 730 -~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~------n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~-l~~s 800 (1099)
.+++|+.|+|++|.+..+|..+..+++|+.|+|++ |++. .+|..+..+++|+.|+|++|+. ..+|. ++++
T Consensus 750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~ 828 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQ 828 (876)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSS
T ss_pred ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCC
Confidence 78888888888888888888888888888888876 5544 7788888888888888888766 77875 5578
Q ss_pred CCeeecccCcCc
Q 001326 801 LRHLEASNCKRL 812 (1099)
Q Consensus 801 L~~L~i~~c~~L 812 (1099)
|+.|++++|+-.
T Consensus 829 L~~LdLs~N~l~ 840 (876)
T 4ecn_A 829 LYILDIADNPNI 840 (876)
T ss_dssp SCEEECCSCTTC
T ss_pred CCEEECCCCCCC
Confidence 888888888743
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.1e-34 Score=349.95 Aligned_cols=420 Identities=20% Similarity=0.199 Sum_probs=312.5
Q ss_pred EeccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCC-CCC-CCCCc
Q 001326 380 FLNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLP-SNF-DLENL 457 (1099)
Q Consensus 380 ~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp-~~~-~l~~L 457 (1099)
.++++.+....+.+.+|.++++|+.|++++|.+.+ ++...+..+.+|++|++++|.+..++ ..+ .+++|
T Consensus 61 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 61 FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF---------MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE---------ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred EEECCCCccceeChhhccCccccCeeeCCCCcccc---------cChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 45666666666777777888888888887776522 22222333455666666666666652 223 56666
Q ss_pred eEEECCCCCccccc-ccccccCCccEEeccCCCCCCcCCC-CCCCCCcc--EEEeeCCCCCCccCccccC----------
Q 001326 458 IELDLPYSKVEQLW-EGEKEAFKLKSIDLHQSHNLTRIPK-QSEAPNLE--RINLWNCKNLLYIPSHIQN---------- 523 (1099)
Q Consensus 458 ~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~--~L~L~~~~~l~~lp~~i~~---------- 523 (1099)
++|+|++|.+..++ ..+..+++|++|++++|.+....+. +..+++|+ .|++++|......|..+..
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 211 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTT
T ss_pred cEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCC
Confidence 66666666666542 2223356666666666654433332 34555555 5555555443333322211
Q ss_pred ---------------------------------------CC--CCCEEEcCCCCCcccCCCCC-CCCCCcEEEccCCcCC
Q 001326 524 ---------------------------------------FN--NLSMLSLRDCISLSCFPRNI-HFRSPVKIDFSGCVNL 561 (1099)
Q Consensus 524 ---------------------------------------l~--~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~~~~l 561 (1099)
+. +|+.|++++|......+..+ .+++|+.|+++++. +
T Consensus 212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l 290 (606)
T 3t6q_A 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-L 290 (606)
T ss_dssp CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-C
T ss_pred chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-c
Confidence 11 67778888774433333334 78999999999974 6
Q ss_pred CCCCCCC---CCccEEEecCcCCccc-CccccCCCCCcEEEeCCcccccccccc-cccCccccEEeccCCCCCCcc--ch
Q 001326 562 TEFPHIS---GNVVELKLFNTPIEEV-PSSIESLPNLKILNLGFCKRLKRVSTG-ICKLKYLRCLYLLDCSDLESF--PE 634 (1099)
Q Consensus 562 ~~l~~~~---~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~l~~~-l~~l~~L~~L~L~~~~~~~~~--~~ 634 (1099)
+.+|... .+|+.|++++|.+..+ |..+..+++|+.|++++|...+.++.. +..+++|++|++++|...... +.
T Consensus 291 ~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 370 (606)
T 3t6q_A 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370 (606)
T ss_dssp SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence 6777654 5789999999999987 557899999999999999988777654 899999999999999887765 77
Q ss_pred hhcCCCCCCEEEccCCCCccc-CcccccCCCCcEEEccCCCCCCcccc-cccCCCCCceeecCCCCCccC-CccccCCCC
Q 001326 635 ILEKMEPLEKLALDRSGIKEL-PSSIENLEGLKELQLMCCSKLGSLPE-SLGNLKSLVVLDANRSAILQL-PSSIADLNK 711 (1099)
Q Consensus 635 ~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~ 711 (1099)
.+..+++|++|++++|.+..+ |..+..+++|+.|++++|...+..+. .+..+++|+.|++++|.+... |..+..+++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 899999999999999999865 66789999999999999998877654 489999999999999999865 667899999
Q ss_pred CcEEEccCCCCCC--C---CCCCCCCCCCEEeccCCCCccc-ccccCCCCCCCEEEccCCCCc-cccccccCCCCCCEEe
Q 001326 712 LRELCLSGCRGFA--L---PPLSTLSSLRTLTLSGCGIIEI-SQDICCLSSLESLNLAENNFE-SLPSSISQLSCLRRLC 784 (1099)
Q Consensus 712 L~~L~L~~~~~~~--l---~~l~~l~~L~~L~Ls~~~l~~l-~~~~~~l~sL~~L~L~~n~l~-~lp~~l~~l~~L~~L~ 784 (1099)
|++|++++|.+.. + ..+..+++|++|++++|.+..+ |..+..+++|+.|+|++|+++ ..|..+..+++| .|+
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 9999999999754 2 2378899999999999999986 567999999999999999998 456789999999 999
Q ss_pred ecCCCCCCCCCCC---CCCCCeeecccCc
Q 001326 785 LRNCNMLQSLPEL---PLGLRHLEASNCK 810 (1099)
Q Consensus 785 L~~c~~l~~lp~l---~~sL~~L~i~~c~ 810 (1099)
+++|+.....|.. .++|+.|++++|+
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred CcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 9998776555543 3688899998876
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.9e-33 Score=349.83 Aligned_cols=427 Identities=22% Similarity=0.205 Sum_probs=261.6
Q ss_pred EeccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCC-C-CCCCc
Q 001326 380 FLNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSN-F-DLENL 457 (1099)
Q Consensus 380 ~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~-~-~l~~L 457 (1099)
.++++.+....+...+|.++++|+.|++++|.+++. +.+.+...++|++|++++|.+..+|.. + .+++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL---------EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC---------CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc---------CHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 466677766777888899999999999998876432 223333446799999999999988874 4 78999
Q ss_pred eEEECCCCCccccc-ccccccCCccEEeccCCCCCCcCCC-CCCCCCccEEEeeCCCCCCccCcccc--CCCCCCEEEcC
Q 001326 458 IELDLPYSKVEQLW-EGEKEAFKLKSIDLHQSHNLTRIPK-QSEAPNLERINLWNCKNLLYIPSHIQ--NFNNLSMLSLR 533 (1099)
Q Consensus 458 ~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L~L~~~~~l~~lp~~i~--~l~~L~~L~L~ 533 (1099)
++|+|++|.++.++ ..+..+++|++|++++|......|. +..+++|++|++++|......+..+. .+++|++|+++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 99999999998887 4578889999999999887666555 67888999999988876554444443 45788888888
Q ss_pred CCCCcccCCCCC-CC---------------------------CCCcEEEccCCcCCCCCCCCC-----CCccEEEecCcC
Q 001326 534 DCISLSCFPRNI-HF---------------------------RSPVKIDFSGCVNLTEFPHIS-----GNVVELKLFNTP 580 (1099)
Q Consensus 534 ~~~~l~~lp~~~-~l---------------------------~~L~~L~l~~~~~l~~l~~~~-----~~L~~L~l~~~~ 580 (1099)
+|......|..+ .+ .+|+.|+++++......|..+ .+|+.|++++|.
T Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 875443333322 11 455666666554333223222 236677777776
Q ss_pred CcccC-ccccCCCCCcEEEeCCcccccccccccccCccccEEec---------------------------------cCC
Q 001326 581 IEEVP-SSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYL---------------------------------LDC 626 (1099)
Q Consensus 581 i~~lp-~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L---------------------------------~~~ 626 (1099)
+..++ ..++.+++|++|++++|.+.+..|..+.++++|+.|++ ++|
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 66554 44666677777777766665555544444444444444 444
Q ss_pred CCCCccchhhcCCCCCCEEEccCCC----------------------------Cccc-CcccccCCCCcEEEccCCCCCC
Q 001326 627 SDLESFPEILEKMEPLEKLALDRSG----------------------------IKEL-PSSIENLEGLKELQLMCCSKLG 677 (1099)
Q Consensus 627 ~~~~~~~~~l~~l~~L~~L~L~~~~----------------------------l~~l-p~~l~~l~~L~~L~L~~~~~l~ 677 (1099)
...+..+..+..+++|++|++++|. ++.+ |..+..+++|+.|++++|...+
T Consensus 340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence 4433333444444444444444332 1111 2233344444444444444433
Q ss_pred ccc-ccccCCCCCceeecCCCCCccC-CccccCCCCCcEEEccCCCCC---CCC-CCCCCCCCCEEeccCCCCcccccc-
Q 001326 678 SLP-ESLGNLKSLVVLDANRSAILQL-PSSIADLNKLRELCLSGCRGF---ALP-PLSTLSSLRTLTLSGCGIIEISQD- 750 (1099)
Q Consensus 678 ~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~---~l~-~l~~l~~L~~L~Ls~~~l~~l~~~- 750 (1099)
.+| ..+.++++|++|++++|.+..+ +..+..+++|+.|++++|.+. ..| .+..+++|+.|++++|.+..++..
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~ 499 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence 332 3344444444444444444332 223444444555555544432 122 266777888888888888876654
Q ss_pred cCCCCCCCEEEccCCCCccccc---------cccCCCCCCEEeecCCCCCCCCCC----CCCCCCeeecccCcCcccCCC
Q 001326 751 ICCLSSLESLNLAENNFESLPS---------SISQLSCLRRLCLRNCNMLQSLPE----LPLGLRHLEASNCKRLQSFPE 817 (1099)
Q Consensus 751 ~~~l~sL~~L~L~~n~l~~lp~---------~l~~l~~L~~L~L~~c~~l~~lp~----l~~sL~~L~i~~c~~L~~l~~ 817 (1099)
+..+++|+.|++++|.++.++. .+..+++|+.|+|++|. ++.+|. ..++|+.|+++++ .++.++.
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 577 (680)
T 1ziw_A 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGLN-NLNTLPA 577 (680)
T ss_dssp TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHcccccCcceeECCCC-CCCcCCH
Confidence 7778888888888887775532 25677888888888764 445663 2357777777665 4555543
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.3e-34 Score=351.58 Aligned_cols=417 Identities=19% Similarity=0.143 Sum_probs=335.2
Q ss_pred EeccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCC-CC-CCCCc
Q 001326 380 FLNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPS-NF-DLENL 457 (1099)
Q Consensus 380 ~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~-~~-~l~~L 457 (1099)
.++++.+....+.+.+|.++++|++|++++|.+++ ++...+....+|++|++++|.+..+|. .+ .+++|
T Consensus 60 ~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~---------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 60 WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS---------FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC---------CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred EEeCCCCcccccCHHHhhchhhcCEeECCCCcccc---------cChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 46777777778888999999999999999987643 222333445679999999999998883 34 89999
Q ss_pred eEEECCCCCccc--ccccccccCCccEEeccCCCCCCcCCC-CCCCCCc----cEEEeeCCCCCCccCccccCCCCCCEE
Q 001326 458 IELDLPYSKVEQ--LWEGEKEAFKLKSIDLHQSHNLTRIPK-QSEAPNL----ERINLWNCKNLLYIPSHIQNFNNLSML 530 (1099)
Q Consensus 458 ~~L~L~~n~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L----~~L~L~~~~~l~~lp~~i~~l~~L~~L 530 (1099)
++|++++|.+.. +|..+..+++|++|++++|.+....+. +..+.+| .+|++++|... .++.......+|+.|
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~~L~~L 209 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHEL 209 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTCEEEEE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCceeeee
Confidence 999999999984 788899999999999999976655443 3333333 36777766543 333333333466666
Q ss_pred EcCCCCCc----------------------------------------------------------ccCCCCCCCCCCcE
Q 001326 531 SLRDCISL----------------------------------------------------------SCFPRNIHFRSPVK 552 (1099)
Q Consensus 531 ~L~~~~~l----------------------------------------------------------~~lp~~~~l~~L~~ 552 (1099)
++++|... ...|....+++|+.
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~ 289 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSE
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCE
Confidence 66665321 12233225788999
Q ss_pred EEccCCcCCCCCCCC--CCCccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCC
Q 001326 553 IDFSGCVNLTEFPHI--SGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLE 630 (1099)
Q Consensus 553 L~l~~~~~l~~l~~~--~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~ 630 (1099)
|+++++.. +.+|.. ..+++.|++++|.+..+|. + .+++|+.|++++|...... .+..+++|+.|++++|....
T Consensus 290 L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 290 MSLAGVSI-KYLEDVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp EEEESCCC-CCCCCCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred EEecCccc-hhhhhccccccCCEEEcccccCccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence 99998753 556633 3478999999999999994 5 9999999999999766654 57799999999999998765
Q ss_pred c--cchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCccc-ccccCCCCCceeecCCCCCcc-CCccc
Q 001326 631 S--FPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLP-ESLGNLKSLVVLDANRSAILQ-LPSSI 706 (1099)
Q Consensus 631 ~--~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~-lp~~~ 706 (1099)
. .+..+..+++|+.|++++|.++.+|..+..+++|+.|++++|...+..| ..+..+++|+.|++++|.+.. .|..+
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 444 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred CcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh
Confidence 5 4788999999999999999999999999999999999999999888877 678999999999999999986 57789
Q ss_pred cCCCCCcEEEccCCCCCC--CCC-CCCCCCCCEEeccCCCCccc-ccccCCCCCCCEEEccCCCCccc-cccccCCCCCC
Q 001326 707 ADLNKLRELCLSGCRGFA--LPP-LSTLSSLRTLTLSGCGIIEI-SQDICCLSSLESLNLAENNFESL-PSSISQLSCLR 781 (1099)
Q Consensus 707 ~~l~~L~~L~L~~~~~~~--l~~-l~~l~~L~~L~Ls~~~l~~l-~~~~~~l~sL~~L~L~~n~l~~l-p~~l~~l~~L~ 781 (1099)
..+++|++|++++|.+.. +|. +..+++|++|++++|.+..+ |..+..+++|++|+|++|+++.+ |..+..+++|+
T Consensus 445 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence 999999999999999765 454 88999999999999999975 55689999999999999999966 78899999999
Q ss_pred EEeecCCCCCCCCCCC----CCCCCeeecccCcCc
Q 001326 782 RLCLRNCNMLQSLPEL----PLGLRHLEASNCKRL 812 (1099)
Q Consensus 782 ~L~L~~c~~l~~lp~l----~~sL~~L~i~~c~~L 812 (1099)
.|+|++|+ ++.+|.. +.+|+.|++++++-.
T Consensus 525 ~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 525 TLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp EEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred EEECCCCc-CcccCHhHhhhcccCcEEEccCCCcc
Confidence 99999986 5678753 346999999987643
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.8e-35 Score=362.94 Aligned_cols=367 Identities=14% Similarity=0.154 Sum_probs=310.9
Q ss_pred cCCCCcCCCCC-CCCCceEEECCCCCccc------------------cccccc--ccCCccEEeccCCCCCCcCCC-CCC
Q 001326 442 ECPLKSLPSNF-DLENLIELDLPYSKVEQ------------------LWEGEK--EAFKLKSIDLHQSHNLTRIPK-QSE 499 (1099)
Q Consensus 442 ~~~l~~lp~~~-~l~~L~~L~L~~n~i~~------------------l~~~~~--~l~~L~~L~Ls~~~~l~~~~~-~~~ 499 (1099)
.|.++.+|..+ ++++|++|+|++|.++. +|..+. .+++|++|+|++|.+...+|. +..
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 35566688877 89999999999999998 999998 999999999999998888886 789
Q ss_pred CCCccEEEeeCCC-CCC-ccCccccCC------CCCCEEEcCCCCCcccCCC--CC-CCCCCcEEEccCCcCCCCCCCC-
Q 001326 500 APNLERINLWNCK-NLL-YIPSHIQNF------NNLSMLSLRDCISLSCFPR--NI-HFRSPVKIDFSGCVNLTEFPHI- 567 (1099)
Q Consensus 500 l~~L~~L~L~~~~-~l~-~lp~~i~~l------~~L~~L~L~~~~~l~~lp~--~~-~l~~L~~L~l~~~~~l~~l~~~- 567 (1099)
+++|++|++++|. ... .+|..++.+ ++|++|++++|... .+|. .+ .+++|+.|+++++.....+|.+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~ 350 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFG 350 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCE
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhC
Confidence 9999999999998 555 689888887 99999999998655 8888 55 8999999999998755477722
Q ss_pred -CCCccEEEecCcCCcccCccccCCCC-CcEEEeCCcccccccccccccCc--cccEEeccCCCCCCccchhhc------
Q 001326 568 -SGNVVELKLFNTPIEEVPSSIESLPN-LKILNLGFCKRLKRVSTGICKLK--YLRCLYLLDCSDLESFPEILE------ 637 (1099)
Q Consensus 568 -~~~L~~L~l~~~~i~~lp~~i~~l~~-L~~L~L~~~~~~~~l~~~l~~l~--~L~~L~L~~~~~~~~~~~~l~------ 637 (1099)
..+|+.|++++|.+..+|..+..+++ |+.|++++|.+. .+|..+..++ +|+.|++++|...+..|..+.
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 24689999999999999999999999 999999999977 7888777655 899999999999998888888
Q ss_pred -CCCCCCEEEccCCCCcccCcccc-cCCCCcEEEccCCCCCCcccccc-cC-------CCCCceeecCCCCCccCCcccc
Q 001326 638 -KMEPLEKLALDRSGIKELPSSIE-NLEGLKELQLMCCSKLGSLPESL-GN-------LKSLVVLDANRSAILQLPSSIA 707 (1099)
Q Consensus 638 -~l~~L~~L~L~~~~l~~lp~~l~-~l~~L~~L~L~~~~~l~~lp~~l-~~-------l~~L~~L~l~~~~i~~lp~~~~ 707 (1099)
.+++|+.|++++|.++.+|..+. .+++|+.|++++|.+. .+|... .. +++|+.|++++|.+..+|..+.
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 508 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence 88899999999999999998764 5999999999999987 555433 32 3399999999999999999987
Q ss_pred --CCCCCcEEEccCCCCCCCCC-CCCCCCCCEEeccC------CCCc-ccccccCCCCCCCEEEccCCCCccccccccCC
Q 001326 708 --DLNKLRELCLSGCRGFALPP-LSTLSSLRTLTLSG------CGII-EISQDICCLSSLESLNLAENNFESLPSSISQL 777 (1099)
Q Consensus 708 --~l~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~Ls~------~~l~-~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l 777 (1099)
.+++|+.|+|++|.+..+|. +..+++|+.|+|++ |.+. .+|..+..+++|+.|+|++|.+..+|..+.
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~-- 586 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT-- 586 (636)
T ss_dssp TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--
T ss_pred hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--
Confidence 99999999999999988876 78899999999954 5555 588899999999999999999999998766
Q ss_pred CCCCEEeecCCCCCCCC-----CCCCC------CCCeeecccCcCcc
Q 001326 778 SCLRRLCLRNCNMLQSL-----PELPL------GLRHLEASNCKRLQ 813 (1099)
Q Consensus 778 ~~L~~L~L~~c~~l~~l-----p~l~~------sL~~L~i~~c~~L~ 813 (1099)
++|+.|+|++|+....- |.... ..+..++.+|+.|+
T Consensus 587 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 587 PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 89999999998765321 11111 23445777888765
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-34 Score=362.95 Aligned_cols=417 Identities=22% Similarity=0.195 Sum_probs=277.8
Q ss_pred EeccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcC-CCCC-CCCCc
Q 001326 380 FLNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSL-PSNF-DLENL 457 (1099)
Q Consensus 380 ~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~l-p~~~-~l~~L 457 (1099)
.+|++.+....+.+..|.++++|++|++++|.. ...++.+.+...++|++|++++|.+..+ |..+ .+++|
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~--------~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT--------PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCC--------CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCC--------ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 467777777778888999999999999998853 2344444455567899999999999987 5556 89999
Q ss_pred eEEECCCCCccc-cccc--ccccCCccEEeccCCCCCCcCC--CCCCCCCccEEEeeCCCCCCccCccccCC--CCCCEE
Q 001326 458 IELDLPYSKVEQ-LWEG--EKEAFKLKSIDLHQSHNLTRIP--KQSEAPNLERINLWNCKNLLYIPSHIQNF--NNLSML 530 (1099)
Q Consensus 458 ~~L~L~~n~i~~-l~~~--~~~l~~L~~L~Ls~~~~l~~~~--~~~~l~~L~~L~L~~~~~l~~lp~~i~~l--~~L~~L 530 (1099)
++|+|++|.+.. ++.. +..+++|++|+|++|.+....+ .++.+++|++|+|++|......+..++.+ ++|+.|
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 999999999986 4544 7899999999999998776654 37899999999999998877778888777 788888
Q ss_pred EcCCCCCcccCCCCC-CCC------CCcEEEccCCcCCCCCCC-------------------------------------
Q 001326 531 SLRDCISLSCFPRNI-HFR------SPVKIDFSGCVNLTEFPH------------------------------------- 566 (1099)
Q Consensus 531 ~L~~~~~l~~lp~~~-~l~------~L~~L~l~~~~~l~~l~~------------------------------------- 566 (1099)
++++|......|..+ .+. .|+.|+++++......+.
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 888886666555443 222 378888887632111110
Q ss_pred ----CCCCccEEEecCcCCccc-CccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCC
Q 001326 567 ----ISGNVVELKLFNTPIEEV-PSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEP 641 (1099)
Q Consensus 567 ----~~~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~ 641 (1099)
...+++.|++++|.+..+ |..+..+++|+.|+|++|.+.+..+..+..+++|++|++++|......+..+..+++
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 024678888888888766 455778888888888888887777777888888888888888877777778888888
Q ss_pred CCEEEccCCCCcccCc-ccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCc----------------
Q 001326 642 LEKLALDRSGIKELPS-SIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPS---------------- 704 (1099)
Q Consensus 642 L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~---------------- 704 (1099)
|+.|++++|.+..++. .+.++++|+.|++++|...+. ..+++|+.|++++|.+..+|.
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~ 414 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCC
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccccccccccceeecccCccc
Confidence 8888888888876654 467788888888888765431 113333333333333332221
Q ss_pred ------cccCCCCCcEEEccCCCCCCCCC---CCCCCCCCEEeccCCCCccc------ccccCCCCCCCEEEccCCCCcc
Q 001326 705 ------SIADLNKLRELCLSGCRGFALPP---LSTLSSLRTLTLSGCGIIEI------SQDICCLSSLESLNLAENNFES 769 (1099)
Q Consensus 705 ------~~~~l~~L~~L~L~~~~~~~l~~---l~~l~~L~~L~Ls~~~l~~l------~~~~~~l~sL~~L~L~~n~l~~ 769 (1099)
.+..+++|+.|+|++|.+...+. +..+++|+.|++++|.+... +..+.++++|+.|+|++|+++.
T Consensus 415 ~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 494 (844)
T 3j0a_A 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494 (844)
T ss_dssp SSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTT
T ss_pred cCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccc
Confidence 13356666666666666544322 33345555555555555421 1224444555555555555544
Q ss_pred ccc-cccCCCCCCEEeecCCCCCCCCCC--CCCCCCeeecccCc
Q 001326 770 LPS-SISQLSCLRRLCLRNCNMLQSLPE--LPLGLRHLEASNCK 810 (1099)
Q Consensus 770 lp~-~l~~l~~L~~L~L~~c~~l~~lp~--l~~sL~~L~i~~c~ 810 (1099)
+|. .+..+++|+.|+|++|+ ++.+|. .+++|+.|+++++.
T Consensus 495 ~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 495 LPPGVFSHLTALRGLSLNSNR-LTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp CCTTSSSSCCSCSEEEEESCC-CSSCCCCCCCSCCCEEEEEEEC
T ss_pred cChhHccchhhhheeECCCCC-CCccChhhhhccccEEECCCCc
Confidence 332 23445555555555542 223321 22445555554443
No 14
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.5e-34 Score=383.57 Aligned_cols=305 Identities=20% Similarity=0.257 Sum_probs=242.0
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHH---HhccCceeEEEEeccccccCCCCHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNL---ISWEFEGRCFVSNVRVESENGHRLV 103 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~~~~~~~~~~ 103 (1099)
.|..++.||||++++++|.++|....+++++|+|+||||+||||||+++|++ ...+|...+|+..+.... .....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~ 196 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD--KSGLL 196 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC--HHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC--chHHH
Confidence 4566778999999999999999766678999999999999999999999986 456676666444443221 22334
Q ss_pred HHHHHHHHHHhcccccccCC----C-hhHHHHHHhcCC--eEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCCccc
Q 001326 104 YLRERVLSEIFEENIKIETP----C-LPEYIGERLRRM--KVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRDKWI 176 (1099)
Q Consensus 104 ~l~~~ll~~l~~~~~~~~~~----~-~~~~l~~~L~~k--r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v 176 (1099)
...+.++..+.......... + ....++..+.++ |+||||||||+.++|+.+ ++|++||||||++.+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHH
Confidence 44555666665543221111 1 455666666666 999999999999877664 689999999999999
Q ss_pred ccc-cCCCCcceEecCC-CCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhcCCCCHHHHHHHHH
Q 001326 177 LDN-FGVHSSNIYEVNG-LEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLGSFFHQKSKPDWEKALE 254 (1099)
Q Consensus 177 ~~~-~~~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~ 254 (1099)
+.. ++... .++++. |+++||++||...++.. .+.+.+.+++|+++|+|+||||+++|++|+.+. .+|+.+++
T Consensus 270 ~~~~~~~~~--~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~ 343 (1249)
T 3sfz_A 270 TDSVMGPKH--VVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLR 343 (1249)
T ss_dssp TTTCCSCBC--CEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHH
T ss_pred HHhhcCCce--EEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHH
Confidence 854 34444 799996 99999999999998543 234456799999999999999999999998765 57999999
Q ss_pred HHhcCCC-----------chhHHHHhhcccCCChhhhhHHhhhccccccc--hHhHHHHHhcCCCc-hhhhHHHHhhccc
Q 001326 255 KINRISD-----------PDIYDVLKISYNDLRPEEKSIFLDIACFVVGE--EKDFVTSILEDPNI-AHYGLSVLIERSL 320 (1099)
Q Consensus 255 ~l~~~~~-----------~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~~~~~l~~~~~-~~~~l~~L~~~sL 320 (1099)
++..... ..+..++.+||+.|++++|.||++||+||.++ +.+.+..+|..++. +...++.|++++|
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl 423 (1249)
T 3sfz_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSL 423 (1249)
T ss_dssp HHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccc
Confidence 9875432 34889999999999999999999999999886 55678899987766 7888999999999
Q ss_pred eEEecCCe---EEehHHHHHHHHHHHhhh
Q 001326 321 VTISKFNK---IEMHDLLQEMGREIVRQE 346 (1099)
Q Consensus 321 i~~~~~~~---~~mHdll~~~~~~i~~~~ 346 (1099)
++....+. |.||+++|+++++...++
T Consensus 424 ~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 424 LFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred eEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99886654 999999999999986655
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.8e-33 Score=340.83 Aligned_cols=419 Identities=18% Similarity=0.189 Sum_probs=295.4
Q ss_pred EeccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCC-C-CCCCc
Q 001326 380 FLNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSN-F-DLENL 457 (1099)
Q Consensus 380 ~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~-~-~l~~L 457 (1099)
.++++.+....+.+.+|.++++|++|++++|.++ .++.+.+....+|++|++++|.+..+|.. + .+++|
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRIN---------TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC---------EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcC---------ccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 4566666666677778888888888888888653 23333344456788888888888888765 3 78888
Q ss_pred eEEECCCCCcccc--cccccccCCccEEeccCCCCCCcCC--CCCCCCCccEEEeeCCCCCCccCccccCCCCCCEEEcC
Q 001326 458 IELDLPYSKVEQL--WEGEKEAFKLKSIDLHQSHNLTRIP--KQSEAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSLR 533 (1099)
Q Consensus 458 ~~L~L~~n~i~~l--~~~~~~l~~L~~L~Ls~~~~l~~~~--~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~ 533 (1099)
++|+|++|.++.+ +..+..+++|++|++++|.....+| .+..+++|++|++++|......|..++.+++|++|+++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 8888888888743 5667888888888888887666665 36888888888888888777778888888888888888
Q ss_pred CCCCcccCCCCC--CCCCCcEEEccCCcCCCC------CCCCCCCccEEEecCcCCc-----ccCccccCCCCCcEEEeC
Q 001326 534 DCISLSCFPRNI--HFRSPVKIDFSGCVNLTE------FPHISGNVVELKLFNTPIE-----EVPSSIESLPNLKILNLG 600 (1099)
Q Consensus 534 ~~~~l~~lp~~~--~l~~L~~L~l~~~~~l~~------l~~~~~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~ 600 (1099)
+|.. ..+|... .+++|+.|+++++..... +.....+++.|++.++.+. .++..+..+++|+.|+++
T Consensus 181 ~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 181 LSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp CSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred cCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 7643 3344333 477888888888653321 1233567788888877665 234445667788888888
Q ss_pred Cccccccc------ccccccCccccEEeccCCCCCCc-----cchhhcCCCCCCEEEccCCCCcccCccc-ccCCCCcEE
Q 001326 601 FCKRLKRV------STGICKLKYLRCLYLLDCSDLES-----FPEILEKMEPLEKLALDRSGIKELPSSI-ENLEGLKEL 668 (1099)
Q Consensus 601 ~~~~~~~l------~~~l~~l~~L~~L~L~~~~~~~~-----~~~~l~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L 668 (1099)
+|...+.. ...+..+++|+.|.+.++..... ++..+..+++|+.|++++|.+..+|..+ ..+++|+.|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE
Confidence 87654421 12345566777777776654321 2223344567888888888888888776 468888888
Q ss_pred EccCCCCCCcccc---cccCCCCCceeecCCCCCccCC---ccccCCCCCcEEEccCCCCCCCCC-CCCCCCCCEEeccC
Q 001326 669 QLMCCSKLGSLPE---SLGNLKSLVVLDANRSAILQLP---SSIADLNKLRELCLSGCRGFALPP-LSTLSSLRTLTLSG 741 (1099)
Q Consensus 669 ~L~~~~~l~~lp~---~l~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~Ls~ 741 (1099)
++++|...+..|. .++.+++|+.|++++|.+..++ ..+..+++|++|++++|.+..+|. +..+++|++|++++
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTT
T ss_pred EccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCC
Confidence 8888887766543 3667788888888888887765 347778888888888888777765 66778888888888
Q ss_pred CCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCCCCC--CCCCCCeeecccCcCcccC
Q 001326 742 CGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQSLPE--LPLGLRHLEASNCKRLQSF 815 (1099)
Q Consensus 742 ~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~--l~~sL~~L~i~~c~~L~~l 815 (1099)
|.+..+|..+ .++|+.|++++|+++.++ ..+++|++|+|++|+ ++.+|. .+++|+.|++++|. ++.+
T Consensus 420 N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~-l~~ip~~~~l~~L~~L~Ls~N~-l~~~ 488 (549)
T 2z81_A 420 TGIRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNK-LKTLPDASLFPVLLVMKISRNQ-LKSV 488 (549)
T ss_dssp SCCSCCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSSCCCGGGCTTCCEEECCSSC-CCCC
T ss_pred CCcccccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCc-cCcCCCcccCccCCEEecCCCc-cCCc
Confidence 8877766544 367888888888777654 467788888888864 456774 34678888887763 4443
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.3e-32 Score=340.29 Aligned_cols=425 Identities=22% Similarity=0.183 Sum_probs=291.3
Q ss_pred eccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCC-C-CCCCce
Q 001326 381 LNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSN-F-DLENLI 458 (1099)
Q Consensus 381 l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~ 458 (1099)
++++.+....++..+|.++++|++|++++|.+.+ ++...+....+|++|++++|.+..++.. + .+++|+
T Consensus 78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK---------IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC---------CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred EECCCCccCccChhhhccCCCCCEEECCCCccCc---------cChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence 4455554455566666677777777776665532 2222233345567777776666655433 2 566666
Q ss_pred EEECCCCCcccccccc---cccCCccEEeccCCCCCCcCCC---------------------------------------
Q 001326 459 ELDLPYSKVEQLWEGE---KEAFKLKSIDLHQSHNLTRIPK--------------------------------------- 496 (1099)
Q Consensus 459 ~L~L~~n~i~~l~~~~---~~l~~L~~L~Ls~~~~l~~~~~--------------------------------------- 496 (1099)
+|++++|.++.++... ..+++|+.|++++|.+....|.
T Consensus 149 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~ 228 (680)
T 1ziw_A 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228 (680)
T ss_dssp EEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred EEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence 6666666666554321 2345666666666654333221
Q ss_pred -------------CCCC--CCccEEEeeCCCCCCccCccccCCCCCCEEEcCCCCCcccCCCCC-CCCCCcEEEccCCcC
Q 001326 497 -------------QSEA--PNLERINLWNCKNLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNI-HFRSPVKIDFSGCVN 560 (1099)
Q Consensus 497 -------------~~~l--~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~~~~ 560 (1099)
+..+ ++|++|++++|......|..++.+++|++|++++|......|..+ .+.+|+.|+++++..
T Consensus 229 L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~ 308 (680)
T 1ziw_A 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308 (680)
T ss_dssp CTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBC
T ss_pred ccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhh
Confidence 1222 236666666655444445556666666666666665444444444 566666666655321
Q ss_pred CC-----CCC-------CCCCCccEEEecCcCCcccCc-cccCCCCCcEEEeCCccccc-ccc-ccccc--CccccEEec
Q 001326 561 LT-----EFP-------HISGNVVELKLFNTPIEEVPS-SIESLPNLKILNLGFCKRLK-RVS-TGICK--LKYLRCLYL 623 (1099)
Q Consensus 561 l~-----~l~-------~~~~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~-~l~-~~l~~--l~~L~~L~L 623 (1099)
-. .+| ....+|+.|++++|.+..++. .+..+++|++|++++|.... .++ ..+.. .++|+.|++
T Consensus 309 ~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L 388 (680)
T 1ziw_A 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388 (680)
T ss_dssp CC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred hcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence 11 122 123456777777777776543 46677777777777765322 122 12222 246778888
Q ss_pred cCCCCCCccchhhcCCCCCCEEEccCCCCc-ccC-cccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCc-
Q 001326 624 LDCSDLESFPEILEKMEPLEKLALDRSGIK-ELP-SSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAIL- 700 (1099)
Q Consensus 624 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~- 700 (1099)
++|...+..|..+..+++|+.|++++|.+. .+| ..+.++++|++|++++|...+..+..+..+++|+.|++++|.+.
T Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccc
Confidence 888777777888999999999999999997 465 57889999999999999988888888999999999999999876
Q ss_pred --cCCccccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCccccc---------ccCCCCCCCEEEccCCCC
Q 001326 701 --QLPSSIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQ---------DICCLSSLESLNLAENNF 767 (1099)
Q Consensus 701 --~lp~~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~---------~~~~l~sL~~L~L~~n~l 767 (1099)
.+|..+..+++|+.|++++|.+..+++ +..+++|++|++++|.+..++. .+..+++|+.|+|++|.+
T Consensus 469 ~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp TTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred cccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 568889999999999999999888876 7899999999999999987532 278899999999999999
Q ss_pred ccccc-cccCCCCCCEEeecCCCCCCCCCC----CCCCCCeeecccCcCcccCC
Q 001326 768 ESLPS-SISQLSCLRRLCLRNCNMLQSLPE----LPLGLRHLEASNCKRLQSFP 816 (1099)
Q Consensus 768 ~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~----l~~sL~~L~i~~c~~L~~l~ 816 (1099)
+.+|. .+.++++|+.|++++|+ ++.+|. ..++|+.|++++| .++.++
T Consensus 549 ~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~ 600 (680)
T 1ziw_A 549 DEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKN-LITSVE 600 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS-CCCBCC
T ss_pred CCCCHHHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCC-cCCccC
Confidence 99986 47899999999999864 556664 2378999999998 455554
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.4e-33 Score=352.10 Aligned_cols=453 Identities=18% Similarity=0.130 Sum_probs=333.7
Q ss_pred EeccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecC-CCCcC-CCCC-CCCC
Q 001326 380 FLNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHEC-PLKSL-PSNF-DLEN 456 (1099)
Q Consensus 380 ~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~-~l~~l-p~~~-~l~~ 456 (1099)
..|.+......++. -.++|+.|++++|.++ .+....+....+|++|++++| .+..+ |..+ ++++
T Consensus 8 ~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~---------~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~ 74 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ----VLNTTERLLLSFNYIR---------TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74 (844)
T ss_dssp EEEESCCCSSCCCS----SCTTCCEEEEESCCCC---------EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTT
T ss_pred EEEccCCCCCCCCC----CCCCcCEEECCCCcCC---------ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCC
Confidence 44555554445554 4579999999999863 233333445578999999999 45567 5555 8999
Q ss_pred ceEEECCCCCcccc-cccccccCCccEEeccCCCCCCcCCC---CCCCCCccEEEeeCCCCCCccC-ccccCCCCCCEEE
Q 001326 457 LIELDLPYSKVEQL-WEGEKEAFKLKSIDLHQSHNLTRIPK---QSEAPNLERINLWNCKNLLYIP-SHIQNFNNLSMLS 531 (1099)
Q Consensus 457 L~~L~L~~n~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~~~---~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~ 531 (1099)
|++|+|++|.+..+ |..+..+++|++|+|++|.+...+|. +..+++|++|+|++|......+ ..++++++|++|+
T Consensus 75 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154 (844)
T ss_dssp CCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred CCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence 99999999999987 77889999999999999987765554 7899999999999998766544 5799999999999
Q ss_pred cCCCCCcccCCCCC-CC--CCCcEEEccCCcCCCCCCCCCC---------CccEEEecCcCCcc-cCccc----------
Q 001326 532 LRDCISLSCFPRNI-HF--RSPVKIDFSGCVNLTEFPHISG---------NVVELKLFNTPIEE-VPSSI---------- 588 (1099)
Q Consensus 532 L~~~~~l~~lp~~~-~l--~~L~~L~l~~~~~l~~l~~~~~---------~L~~L~l~~~~i~~-lp~~i---------- 588 (1099)
|++|......+..+ .+ .+|+.|+++++......|...+ .++.|++++|.+.. +|..+
T Consensus 155 Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp EESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred CCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence 99987666666655 34 8999999999876555543322 38999999886541 22111
Q ss_pred --------------------------cC--CCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCC
Q 001326 589 --------------------------ES--LPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKME 640 (1099)
Q Consensus 589 --------------------------~~--l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~ 640 (1099)
.. .++|+.|++++|.+....+..+..+++|+.|++++|......+..+..++
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 314 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS
T ss_pred ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC
Confidence 11 26899999999998888888899999999999999998888888899999
Q ss_pred CCCEEEccCCCCccc-CcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccC
Q 001326 641 PLEKLALDRSGIKEL-PSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSG 719 (1099)
Q Consensus 641 ~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~ 719 (1099)
+|++|++++|.++.+ |..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+..++. +++|+.|++++
T Consensus 315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~ 390 (844)
T 3j0a_A 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSG 390 (844)
T ss_dssp SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEES
T ss_pred CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCC
Confidence 999999999999866 6788999999999999998877777788999999999999999887654 67778888877
Q ss_pred CCCCCCCCC-----------------------CCCCCCCEEeccCCCCcccccc--cCCCCCCCEEEccCCCCccc----
Q 001326 720 CRGFALPPL-----------------------STLSSLRTLTLSGCGIIEISQD--ICCLSSLESLNLAENNFESL---- 770 (1099)
Q Consensus 720 ~~~~~l~~l-----------------------~~l~~L~~L~Ls~~~l~~l~~~--~~~l~sL~~L~L~~n~l~~l---- 770 (1099)
|.+..+|.. ..+++|+.|+|++|.+..++.. +..+++|+.|+|++|.++.+
T Consensus 391 N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~ 470 (844)
T 3j0a_A 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470 (844)
T ss_dssp CCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSC
T ss_pred CCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccc
Confidence 776655542 2566677777777776654332 45567777777777766532
Q ss_pred --cccccCCCCCCEEeecCCCCCCCCCCC---CCCCCeeecccCcCcccCCC--CchhhHHhhHhHHhhhhcccCCCccc
Q 001326 771 --PSSISQLSCLRRLCLRNCNMLQSLPEL---PLGLRHLEASNCKRLQSFPE--SPSCIEELHASLVEKLSDQAHGSVSL 843 (1099)
Q Consensus 771 --p~~l~~l~~L~~L~L~~c~~l~~lp~l---~~sL~~L~i~~c~~L~~l~~--~~~~L~~L~~~~~~~L~~~~~~~~~~ 843 (1099)
|..+.++++|+.|+|++|......|.. .++|+.|+++++ +++.++. .+.+|+.|+++... ++... ...+
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~-l~~~~--~~~~ 546 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQ-LLAPN--PDVF 546 (844)
T ss_dssp CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEEC-CCCCC--SCCC
T ss_pred cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC-CCCccChhhhhccccEEECCCCc-CCCCC--hhHh
Confidence 234666777788888776444333332 367888888887 4555543 23455555554432 11111 1234
Q ss_pred CCCceEEEcC
Q 001326 844 TAPGMLKFDN 853 (1099)
Q Consensus 844 ~~l~~l~i~n 853 (1099)
..+..+++.+
T Consensus 547 ~~L~~l~l~~ 556 (844)
T 3j0a_A 547 VSLSVLDITH 556 (844)
T ss_dssp SSCCEEEEEE
T ss_pred CCcCEEEecC
Confidence 5667777765
No 18
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=5.8e-34 Score=344.65 Aligned_cols=277 Identities=19% Similarity=0.190 Sum_probs=213.7
Q ss_pred CccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHH--HHhccCce-eEEEEeccccccCCCCHHHHHHH
Q 001326 32 KGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFN--LISWEFEG-RCFVSNVRVESENGHRLVYLRER 108 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ 108 (1099)
+..|||+.++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+. ++|+. ++ ...+...+...
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs----~~~d~~~IL~~ 201 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LK----NCNSPETVLEM 201 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CC----CSSSHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eC----CCCCHHHHHHH
Confidence 34599999999999999742 3479999999999999999999997 57889997 55554 43 33455666666
Q ss_pred HHHHHhccccc---cc--------CCC-hhHHHHHHh---cCCeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCC
Q 001326 109 VLSEIFEENIK---IE--------TPC-LPEYIGERL---RRMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRD 173 (1099)
Q Consensus 109 ll~~l~~~~~~---~~--------~~~-~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~ 173 (1099)
++..+...... .. ..+ ....+++.| .+||+||||||||+.++|+.+ ++||+||||||+
T Consensus 202 Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd 274 (1221)
T 1vt4_I 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSC
T ss_pred HHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccC
Confidence 66543321110 00 001 344566655 689999999999999999876 279999999999
Q ss_pred cccccccCCCCcceEecC------CCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhcCCC--C
Q 001326 174 KWILDNFGVHSSNIYEVN------GLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLGSFFHQK--S 245 (1099)
Q Consensus 174 ~~v~~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~--~ 245 (1099)
+.++..+.... .|+|+ +|+.+||++||+++. +.. ..++..++ |+|+|||++++|+.|+++ +
T Consensus 275 ~~Va~~l~g~~--vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAAT--TTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHS--SCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCe--EEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 99886443332 46666 999999999999984 322 12333443 999999999999999876 6
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHhhcccCCChhh-hhHHhhhccccccch--HhHHHHHhcCCCc--hhhhHHHHhhccc
Q 001326 246 KPDWEKALEKINRISDPDIYDVLKISYNDLRPEE-KSIFLDIACFVVGEE--KDFVTSILEDPNI--AHYGLSVLIERSL 320 (1099)
Q Consensus 246 ~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~la~f~~~~~--~~~~~~~l~~~~~--~~~~l~~L~~~sL 320 (1099)
..+|+.. ....+..+|+.||+.|++++ |.||+++|+||.+.. .+.+..+|.+.|. +..+++.|+++||
T Consensus 344 ~eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSL 416 (1221)
T 1vt4_I 344 WDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416 (1221)
T ss_dssp HHHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSS
T ss_pred HHHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Confidence 7788753 35689999999999999999 999999999998764 4568889998864 6778999999999
Q ss_pred eEEec-CCeEEehHHHHHHH
Q 001326 321 VTISK-FNKIEMHDLLQEMG 339 (1099)
Q Consensus 321 i~~~~-~~~~~mHdll~~~~ 339 (1099)
|+... .++|+|||++++++
T Consensus 417 Lq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 417 VEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SSBCSSSSEEBCCCHHHHHH
T ss_pred EEEeCCCCEEEehHHHHHHh
Confidence 99863 56899999998844
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.1e-33 Score=347.77 Aligned_cols=380 Identities=16% Similarity=0.183 Sum_probs=316.4
Q ss_pred CCeeEEEeecCCCC-cCCCCC-CCCCceEEEC-CCCCcccc-ccc-----------------------------------
Q 001326 433 DGLRYLHWHECPLK-SLPSNF-DLENLIELDL-PYSKVEQL-WEG----------------------------------- 473 (1099)
Q Consensus 433 ~~Lr~L~l~~~~l~-~lp~~~-~l~~L~~L~L-~~n~i~~l-~~~----------------------------------- 473 (1099)
..+..|+++++.+. .+|+.+ ++++|++|+| ++|.+... +..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 56999999999987 778777 8999999999 77765432 100
Q ss_pred --------------c--cccCCccEEeccC--CCCCCcCCC-CCCCCCccEEEeeCCCCCC-----------------cc
Q 001326 474 --------------E--KEAFKLKSIDLHQ--SHNLTRIPK-QSEAPNLERINLWNCKNLL-----------------YI 517 (1099)
Q Consensus 474 --------------~--~~l~~L~~L~Ls~--~~~l~~~~~-~~~l~~L~~L~L~~~~~l~-----------------~l 517 (1099)
+ .....++.+.+.. |.+.. +|. +..+++|++|+|++|.... .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0 0111222222222 33333 565 7899999999999998766 39
Q ss_pred Ccccc--CCCCCCEEEcCCCCCcccCCCCC-CCCCCcEEEccCCcCCCC--CCC----------CCCCccEEEecCcCCc
Q 001326 518 PSHIQ--NFNNLSMLSLRDCISLSCFPRNI-HFRSPVKIDFSGCVNLTE--FPH----------ISGNVVELKLFNTPIE 582 (1099)
Q Consensus 518 p~~i~--~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~~~~l~~--l~~----------~~~~L~~L~l~~~~i~ 582 (1099)
|..++ ++++|++|+|++|.....+|..+ .+++|+.|+++++..++. +|. ...+|+.|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 99988 99999999999999899999877 899999999999875553 553 2348999999999999
Q ss_pred ccCc--cccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCC-CCEEEccCCCCcccCccc
Q 001326 583 EVPS--SIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEP-LEKLALDRSGIKELPSSI 659 (1099)
Q Consensus 583 ~lp~--~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~-L~~L~L~~~~l~~lp~~l 659 (1099)
.+|. .++.+++|+.|+|++|.+. .+| .++.+++|+.|++++|... .+|..+..+++ |+.|++++|.++.+|..+
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~ 638 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCC
T ss_pred ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhh
Confidence 9999 9999999999999999987 788 8999999999999999987 88888999999 999999999999999988
Q ss_pred ccCCC--CcEEEccCCCCCCccccc---cc--CCCCCceeecCCCCCccCCcccc-CCCCCcEEEccCCCCCCCCC--CC
Q 001326 660 ENLEG--LKELQLMCCSKLGSLPES---LG--NLKSLVVLDANRSAILQLPSSIA-DLNKLRELCLSGCRGFALPP--LS 729 (1099)
Q Consensus 660 ~~l~~--L~~L~L~~~~~l~~lp~~---l~--~l~~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~L~~~~~~~l~~--l~ 729 (1099)
..++. |+.|++++|.+.+.+|.. +. .+++|+.|++++|.+..+|..+. .+++|+.|+|++|.+..+|. +.
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~ 718 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSS
T ss_pred hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhc
Confidence 77654 999999999988766532 23 34589999999999999998765 89999999999999887776 22
Q ss_pred -------CCCCCCEEeccCCCCcccccccC--CCCCCCEEEccCCCCccccccccCCCCCCEEeecC------CCCCCCC
Q 001326 730 -------TLSSLRTLTLSGCGIIEISQDIC--CLSSLESLNLAENNFESLPSSISQLSCLRRLCLRN------CNMLQSL 794 (1099)
Q Consensus 730 -------~l~~L~~L~Ls~~~l~~l~~~~~--~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~------c~~l~~l 794 (1099)
++++|+.|+|++|.+..+|..+. .+++|+.|+|++|.++.+|..+..+++|+.|+|++ |.....+
T Consensus 719 ~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i 798 (876)
T 4ecn_A 719 PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798 (876)
T ss_dssp CTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred cccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccC
Confidence 23499999999999999999987 99999999999999999999999999999999987 6667778
Q ss_pred CCC---CCCCCeeecccCcCcccCCC
Q 001326 795 PEL---PLGLRHLEASNCKRLQSFPE 817 (1099)
Q Consensus 795 p~l---~~sL~~L~i~~c~~L~~l~~ 817 (1099)
|.. +++|+.|++++|.- ..+|.
T Consensus 799 p~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hHHHhcCCCCCEEECCCCCC-CccCH
Confidence 854 47899999999875 77776
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-32 Score=333.65 Aligned_cols=457 Identities=17% Similarity=0.151 Sum_probs=356.9
Q ss_pred ccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCC-C-CCCCceE
Q 001326 382 NLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSN-F-DLENLIE 459 (1099)
Q Consensus 382 ~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~ 459 (1099)
|.+......++...+ ++|+.|++++|.+++ ++...+...++|++|++++|.+..++.. + .+++|++
T Consensus 11 ~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 11 DGRSRSFTSIPSGLT---AAMKSLDLSFNKITY---------IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp ECTTSCCSSCCSCCC---TTCCEEECCSSCCCE---------ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ECCCCccccccccCC---CCccEEECcCCccCc---------cChhhhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence 344333344444332 689999999997632 2333334457799999999999998853 4 8999999
Q ss_pred EECCCCCccccccc-ccccCCccEEeccCCCCCC-cC-CCCCCCCCccEEEeeCCCCCCccC-ccccCCCCCCEEEcCCC
Q 001326 460 LDLPYSKVEQLWEG-EKEAFKLKSIDLHQSHNLT-RI-PKQSEAPNLERINLWNCKNLLYIP-SHIQNFNNLSMLSLRDC 535 (1099)
Q Consensus 460 L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~~~~l~-~~-~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~ 535 (1099)
|+|++|.++.++.. +..+++|++|++++|.+.. .. +.+..+++|++|++++|.....+| ..++++++|++|++++|
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 99999999988766 7999999999999998764 23 457999999999999998777776 57999999999999999
Q ss_pred CCcccCCCCC-CCCCCcEEEccCCcCCCCCCC----CCCCccEEEecCcCCcccC---c-cccCCCCCcEEEeCCccccc
Q 001326 536 ISLSCFPRNI-HFRSPVKIDFSGCVNLTEFPH----ISGNVVELKLFNTPIEEVP---S-SIESLPNLKILNLGFCKRLK 606 (1099)
Q Consensus 536 ~~l~~lp~~~-~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~~~i~~lp---~-~i~~l~~L~~L~L~~~~~~~ 606 (1099)
......|..+ .+++|+.|+++++.. ..+|. ...+|+.|++++|.+..++ . ....+++|+.|++++|.+.+
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred cccccChhhhhccccCceEecccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 8777777777 788999999988753 33332 3578999999999998763 2 23467899999999998765
Q ss_pred ccc----cccccCccccEEeccCCCCCCc------cchhhcCCCCCCEEEccCCCCccc------CcccccCCCCcEEEc
Q 001326 607 RVS----TGICKLKYLRCLYLLDCSDLES------FPEILEKMEPLEKLALDRSGIKEL------PSSIENLEGLKELQL 670 (1099)
Q Consensus 607 ~l~----~~l~~l~~L~~L~L~~~~~~~~------~~~~l~~l~~L~~L~L~~~~l~~l------p~~l~~l~~L~~L~L 670 (1099)
..+ ..+..+++|+.|++++|...+. ....+..+++|+.|++.++.+... +......++|+.|++
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 443 3456788999999999876442 123457788999999999876543 223445689999999
Q ss_pred cCCCCCCcccccc-cCCCCCceeecCCCCCccC----CccccCCCCCcEEEccCCCCCCCCC----CCCCCCCCEEeccC
Q 001326 671 MCCSKLGSLPESL-GNLKSLVVLDANRSAILQL----PSSIADLNKLRELCLSGCRGFALPP----LSTLSSLRTLTLSG 741 (1099)
Q Consensus 671 ~~~~~l~~lp~~l-~~l~~L~~L~l~~~~i~~l----p~~~~~l~~L~~L~L~~~~~~~l~~----l~~l~~L~~L~Ls~ 741 (1099)
++|.. +.+|..+ ..+++|+.|++++|.+... +..++.+++|+.|++++|.+..++. +..+++|++|++++
T Consensus 318 ~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 396 (549)
T 2z81_A 318 ENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396 (549)
T ss_dssp ESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTT
T ss_pred ccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCC
Confidence 99985 4677665 5799999999999999853 2347889999999999999987764 78899999999999
Q ss_pred CCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCCCCCCCCCCCeeecccCcCcccCCCC--c
Q 001326 742 CGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQSLPELPLGLRHLEASNCKRLQSFPES--P 819 (1099)
Q Consensus 742 ~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~i~~c~~L~~l~~~--~ 819 (1099)
|.+..+|..+..+++|++|++++|.++.+|..+ .++|+.|++++|+ ++.++...++|+.|++++| .++.+|.. .
T Consensus 397 N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~-l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l 472 (549)
T 2z81_A 397 NTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNN-LDSFSLFLPRLQELYISRN-KLKTLPDASLF 472 (549)
T ss_dssp CCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSSCCCGGGC
T ss_pred CCCccCChhhcccccccEEECCCCCcccccchh--cCCceEEECCCCC-hhhhcccCChhcEEECCCC-ccCcCCCcccC
Confidence 999999999999999999999999999888665 3699999999985 5556667789999999998 56777752 2
Q ss_pred hhhHHhhHhHHhhhhcccCC-CcccCCCceEEEcCCCCc
Q 001326 820 SCIEELHASLVEKLSDQAHG-SVSLTAPGMLKFDNCLKL 857 (1099)
Q Consensus 820 ~~L~~L~~~~~~~L~~~~~~-~~~~~~l~~l~i~nC~~L 857 (1099)
..|+.|+++.+ .++..... ...+++++.|++.+|+=.
T Consensus 473 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 473 PVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp TTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred ccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 45566666554 33333322 356778899999888743
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=335.42 Aligned_cols=401 Identities=21% Similarity=0.204 Sum_probs=329.6
Q ss_pred EeccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCC-C-CCCCc
Q 001326 380 FLNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSN-F-DLENL 457 (1099)
Q Consensus 380 ~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~-~-~l~~L 457 (1099)
.+|++.+....+...+|.++++|++|++++|.++ .++.+.+....+|++|++++|.+..+|.. + .+++|
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ---------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---------EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcCC---------ccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 4677777777888899999999999999998763 34444555567899999999999999873 3 89999
Q ss_pred eEEECCCCCccc--ccccccccCCccEEeccCCCCCCcCCC-CCCCCCc----cEEEeeCCCCCCccCccccCCCCCCEE
Q 001326 458 IELDLPYSKVEQ--LWEGEKEAFKLKSIDLHQSHNLTRIPK-QSEAPNL----ERINLWNCKNLLYIPSHIQNFNNLSML 530 (1099)
Q Consensus 458 ~~L~L~~n~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L----~~L~L~~~~~l~~lp~~i~~l~~L~~L 530 (1099)
++|++++|.++. +|..+..+++|++|++++|.+....+. +..+++| +.|++++|......|..+..+ +|++|
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L 205 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeE
Confidence 999999999986 688899999999999999986655443 5556666 788888887655555555544 67777
Q ss_pred EcCCCCC----------------------------------------------------------cccCCCCC-CCCCCc
Q 001326 531 SLRDCIS----------------------------------------------------------LSCFPRNI-HFRSPV 551 (1099)
Q Consensus 531 ~L~~~~~----------------------------------------------------------l~~lp~~~-~l~~L~ 551 (1099)
++++|.. ....|..+ .+++|+
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~ 285 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence 7776521 11223333 578999
Q ss_pred EEEccCCcCCCCCCCCCC--CccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCC
Q 001326 552 KIDFSGCVNLTEFPHISG--NVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDL 629 (1099)
Q Consensus 552 ~L~l~~~~~l~~l~~~~~--~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~ 629 (1099)
.|+++++. ++.+|.... +++.|++.++.+..+|. ..+++|+.|++++|......+. ..+++|++|++++|...
T Consensus 286 ~L~l~~~~-l~~l~~~~~~~~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~ 360 (570)
T 2z63_A 286 SFSLVSVT-IERVKDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLS 360 (570)
T ss_dssp EEEEESCE-ECSCCBCCSCCCCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCB
T ss_pred EEEecCcc-chhhhhhhccCCccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccC
Confidence 99999875 445654332 78999999999999987 5789999999999987776654 78999999999999876
Q ss_pred Ccc--chhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCccc-ccccCCCCCceeecCCCCCcc-CCcc
Q 001326 630 ESF--PEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLP-ESLGNLKSLVVLDANRSAILQ-LPSS 705 (1099)
Q Consensus 630 ~~~--~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~-lp~~ 705 (1099)
... +..+..+++|++|++++|.+..+|..+..+++|+.|++++|...+..| ..+.++++|+.|++++|.+.. .|..
T Consensus 361 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 440 (570)
T 2z63_A 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440 (570)
T ss_dssp EEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred ccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh
Confidence 543 788999999999999999999998889999999999999999877665 568899999999999999986 5678
Q ss_pred ccCCCCCcEEEccCCCCC--CCCC-CCCCCCCCEEeccCCCCccc-ccccCCCCCCCEEEccCCCCccccc-cccCCCCC
Q 001326 706 IADLNKLRELCLSGCRGF--ALPP-LSTLSSLRTLTLSGCGIIEI-SQDICCLSSLESLNLAENNFESLPS-SISQLSCL 780 (1099)
Q Consensus 706 ~~~l~~L~~L~L~~~~~~--~l~~-l~~l~~L~~L~Ls~~~l~~l-~~~~~~l~sL~~L~L~~n~l~~lp~-~l~~l~~L 780 (1099)
+..+++|+.|++++|.+. .+|. +..+++|++|++++|.+..+ |..+..+++|+.|++++|+++.+|. .+..+++|
T Consensus 441 ~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 899999999999999975 3554 88999999999999999986 7789999999999999999997764 57899999
Q ss_pred CEEeecCCCCCCCCC
Q 001326 781 RRLCLRNCNMLQSLP 795 (1099)
Q Consensus 781 ~~L~L~~c~~l~~lp 795 (1099)
+.|++++|+.....|
T Consensus 521 ~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 521 QKIWLHTNPWDCSCP 535 (570)
T ss_dssp CEEECCSSCBCCCTT
T ss_pred cEEEecCCcccCCCc
Confidence 999999998665554
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=338.74 Aligned_cols=413 Identities=16% Similarity=0.152 Sum_probs=326.7
Q ss_pred EeccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCCCCCCCceE
Q 001326 380 FLNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSNFDLENLIE 459 (1099)
Q Consensus 380 ~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~~~l~~L~~ 459 (1099)
.++++.+....+.+.+|.++++|++|++++|.+++ +....+...++|++|++++|.++.+|.. .+++|++
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~ 94 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQY---------LDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKH 94 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE---------EEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSE
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCC---------cChHHhhcccCCCEEecCCCceeecCcc-ccCCccE
Confidence 46777777777788889999999999999887632 2222333456799999999999999888 8999999
Q ss_pred EECCCCCccc--ccccccccCCccEEeccCCCCCCcCCCCCCCCCc--cEEEeeCCCC--CCccCccccCCC-CCCEEEc
Q 001326 460 LDLPYSKVEQ--LWEGEKEAFKLKSIDLHQSHNLTRIPKQSEAPNL--ERINLWNCKN--LLYIPSHIQNFN-NLSMLSL 532 (1099)
Q Consensus 460 L~L~~n~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L--~~L~L~~~~~--l~~lp~~i~~l~-~L~~L~L 532 (1099)
|+|++|.++. +|..+..+++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..+..+. +...+++
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 9999999986 46788899999999999987654 345666777 9999999887 667777777665 3445677
Q ss_pred CCCCCcccCCCCC--CCCCCcEEEccCCcC-------CCCCC--CCCCCccEEEecCcCCcc-----cCccccCCCCCcE
Q 001326 533 RDCISLSCFPRNI--HFRSPVKIDFSGCVN-------LTEFP--HISGNVVELKLFNTPIEE-----VPSSIESLPNLKI 596 (1099)
Q Consensus 533 ~~~~~l~~lp~~~--~l~~L~~L~l~~~~~-------l~~l~--~~~~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~ 596 (1099)
++|.....++... .+++|+.++++++.. ...+| ....+++.|++.++.+.. ++..+ ..++|++
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~-~~~~L~~ 251 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV-WHTTVWY 251 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH-HTSSCSE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh-hhCcccE
Confidence 7776666665544 688888888888641 11111 123468888888776652 22222 2469999
Q ss_pred EEeCCccccccccccc-----ccCccccEEeccCCCCCCccc-hhhcCC---CCCCEEEccCCCCcccCcccccCCCCcE
Q 001326 597 LNLGFCKRLKRVSTGI-----CKLKYLRCLYLLDCSDLESFP-EILEKM---EPLEKLALDRSGIKELPSSIENLEGLKE 667 (1099)
Q Consensus 597 L~L~~~~~~~~l~~~l-----~~l~~L~~L~L~~~~~~~~~~-~~l~~l---~~L~~L~L~~~~l~~lp~~l~~l~~L~~ 667 (1099)
|++++|.+.+.+|..+ .++++|+.+++++|.. .+| ..+..+ .+|+.|++++|.+..++. ...+++|++
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 328 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLH 328 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCE
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccE
Confidence 9999999988899888 8999999999999887 555 444444 689999999999876652 268899999
Q ss_pred EEccCCCCCCcccccccCCCCCceeecCCCCCcc---CCccccCCCCCcEEEccCCCCCC-CCC--CCCCCCCCEEeccC
Q 001326 668 LQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQ---LPSSIADLNKLRELCLSGCRGFA-LPP--LSTLSSLRTLTLSG 741 (1099)
Q Consensus 668 L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~L~~~~~~~-l~~--l~~l~~L~~L~Ls~ 741 (1099)
|++++|...+..|..++.+++|++|++++|.+.. +|..+..+++|++|++++|.+.. +|. +..+++|++|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 9999999999899999999999999999999985 45678999999999999999887 664 78899999999999
Q ss_pred CCCcc-cccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCCCCCC----CCCCCeeecccCcC
Q 001326 742 CGIIE-ISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQSLPEL----PLGLRHLEASNCKR 811 (1099)
Q Consensus 742 ~~l~~-l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l----~~sL~~L~i~~c~~ 811 (1099)
|.++. +|..+. ++|+.|++++|+++.+|..+..+++|+.|++++|+ ++.+|.. .++|+.|++++++-
T Consensus 409 N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 409 NILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp SCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCCC
Confidence 99974 555443 79999999999999999999999999999999975 5578753 46889999988863
No 23
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=336.03 Aligned_cols=327 Identities=19% Similarity=0.226 Sum_probs=242.9
Q ss_pred cCCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHH---hccCc-eeEEEEeccccccCCCC
Q 001326 26 SVSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLI---SWEFE-GRCFVSNVRVESENGHR 101 (1099)
Q Consensus 26 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~f~-~~~~~~~~~~~~~~~~~ 101 (1099)
..|..+..||||+.++++|.+++....++.++|+|+||||+||||||++++++. +.+|+ .++|+. +... +
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~-----~ 191 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQ-----D 191 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESC-----C
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCC-----c
Confidence 456677889999999999999998655678999999999999999999999854 67885 566665 3221 2
Q ss_pred HHHHHHHH---HHHHhcccc----cccCCC-hhHHHHHHhcC--CeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEe
Q 001326 102 LVYLRERV---LSEIFEENI----KIETPC-LPEYIGERLRR--MKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITT 171 (1099)
Q Consensus 102 ~~~l~~~l---l~~l~~~~~----~~~~~~-~~~~l~~~L~~--kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTT 171 (1099)
...+...+ ...+..... ...... ....+.+.+.+ +++||||||||+..+++.+ ++|++|||||
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTs 264 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTT 264 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEE
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEEC
Confidence 22233332 333321111 111111 45556666665 7899999999998776643 6789999999
Q ss_pred CCcccccccCCCCcceEec---CCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhcCCCCHHH
Q 001326 172 RDKWILDNFGVHSSNIYEV---NGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLGSFFHQKSKPD 248 (1099)
Q Consensus 172 R~~~v~~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~ 248 (1099)
|+..++..++ .. .|++ ++|+.+||++||...++.. .+...+.+++|+++|+|+|||++++|+.++.+. .+
T Consensus 265 R~~~~~~~~~-~~--~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~ 337 (591)
T 1z6t_A 265 RDKSVTDSVM-GP--KYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NR 337 (591)
T ss_dssp SCGGGGTTCC-SC--EEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TC
T ss_pred CCcHHHHhcC-CC--ceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hh
Confidence 9998876653 22 4555 5899999999999998642 223346789999999999999999999997753 47
Q ss_pred HHHHHHHHhcCC-----------CchhHHHHhhcccCCChhhhhHHhhhccccccc--hHhHHHHHhcCCCc-hhhhHHH
Q 001326 249 WEKALEKINRIS-----------DPDIYDVLKISYNDLRPEEKSIFLDIACFVVGE--EKDFVTSILEDPNI-AHYGLSV 314 (1099)
Q Consensus 249 w~~~l~~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~~~~~l~~~~~-~~~~l~~ 314 (1099)
|...++.+.... ...+..++..||+.|+++.|.||+++|+||.+. +.+.+..+|..... +...++.
T Consensus 338 w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~ 417 (591)
T 1z6t_A 338 WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQE 417 (591)
T ss_dssp HHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHH
Confidence 999999887543 136889999999999999999999999999875 44677888876644 6778999
Q ss_pred HhhccceEEecC---CeEEehHHHHHHHHHHHhhh-------------------cccCCCCcccccChHHHHHHHhcCCC
Q 001326 315 LIERSLVTISKF---NKIEMHDLLQEMGREIVRQE-------------------CIKEPGKRSRLWNHEEILHVIKKNKG 372 (1099)
Q Consensus 315 L~~~sLi~~~~~---~~~~mHdll~~~~~~i~~~~-------------------~~~~~~~~~~l~~~~~i~~vl~~~~~ 372 (1099)
|++++||....+ .+|.||+++|+++++....+ ....++....+|..+.+.|++..+..
T Consensus 418 L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~ 497 (591)
T 1z6t_A 418 FVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMH 497 (591)
T ss_dssp HHHTTSSEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCH
T ss_pred HHhCcCeEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCH
Confidence 999999987643 27999999999998872211 01223345566777788888776654
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=4e-31 Score=319.44 Aligned_cols=392 Identities=16% Similarity=0.122 Sum_probs=302.9
Q ss_pred cEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCC-CC-CCCCceEEECCCCCcccc-cccccccCC
Q 001326 403 RLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPS-NF-DLENLIELDLPYSKVEQL-WEGEKEAFK 479 (1099)
Q Consensus 403 r~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~ 479 (1099)
+.|++++|.++. +|..+. ++|++|++++|.+..++. .+ .+++|++|+|++|+++.+ |..+..+++
T Consensus 3 ~~l~ls~n~l~~---------ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 70 (520)
T 2z7x_B 3 FLVDRSKNGLIH---------VPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70 (520)
T ss_dssp CEEECTTSCCSS---------CCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTT
T ss_pred ceEecCCCCccc---------cccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccC
Confidence 678999887744 333332 789999999999999885 34 899999999999999988 678899999
Q ss_pred ccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCCCC-ccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCC--cEEEcc
Q 001326 480 LKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKNLL-YIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSP--VKIDFS 556 (1099)
Q Consensus 480 L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L--~~L~l~ 556 (1099)
|++|+|++|.+. .+|.. .+++|++|+|++|.... .+|..++++++|++|++++|..... ....+.+| +.|+++
T Consensus 71 L~~L~Ls~N~l~-~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 71 LEYLDLSHNKLV-KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS--SVLPIAHLNISKVLLV 146 (520)
T ss_dssp CCEEECCSSCCC-EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG--GGGGGTTSCEEEEEEE
T ss_pred CCEEecCCCcee-ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh--hccccccceeeEEEee
Confidence 999999999865 67766 89999999999998776 5789999999999999999864431 12256777 999999
Q ss_pred CCcC--CCCCCCCCCCcc----EEEecCcCCcc-cC-c------------------------------cccCCCCCcEEE
Q 001326 557 GCVN--LTEFPHISGNVV----ELKLFNTPIEE-VP-S------------------------------SIESLPNLKILN 598 (1099)
Q Consensus 557 ~~~~--l~~l~~~~~~L~----~L~l~~~~i~~-lp-~------------------------------~i~~l~~L~~L~ 598 (1099)
++.. ....|.....++ .+++.++.+.. ++ . .++.+++|+.|+
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~ 226 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEE
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcc
Confidence 9876 445555444432 33344443321 11 1 234444455555
Q ss_pred eCCcccccccccccc---cCccccEEeccCCCCCCccchhh-----cCCCCCCEEEccCCCCcccC-cccccC---CCCc
Q 001326 599 LGFCKRLKRVSTGIC---KLKYLRCLYLLDCSDLESFPEIL-----EKMEPLEKLALDRSGIKELP-SSIENL---EGLK 666 (1099)
Q Consensus 599 L~~~~~~~~l~~~l~---~l~~L~~L~L~~~~~~~~~~~~l-----~~l~~L~~L~L~~~~l~~lp-~~l~~l---~~L~ 666 (1099)
+++|.+.+..+..+. ..++|++|++++|...+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCS
T ss_pred ccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCcee
Confidence 544443332211111 13578888998888877888888 8999999999999999 788 555555 7899
Q ss_pred EEEccCCCCCCcccccccCCCCCceeecCCCCCcc-CCccccCCCCCcEEEccCCCCCCCCC----CCCCCCCCEEeccC
Q 001326 667 ELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQ-LPSSIADLNKLRELCLSGCRGFALPP----LSTLSSLRTLTLSG 741 (1099)
Q Consensus 667 ~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~L~~~~~~~l~~----l~~l~~L~~L~Ls~ 741 (1099)
.|++++|...... ....+++|++|++++|.+.. +|..+..+++|++|++++|.+..++. +..+++|++|++++
T Consensus 306 ~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 306 NFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383 (520)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred EEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC
Confidence 9999999865432 12688999999999999997 78899999999999999999886543 78999999999999
Q ss_pred CCCcc-cccc-cCCCCCCCEEEccCCCCc-cccccccCCCCCCEEeecCCCCCCCCCC---CCCCCCeeecccCcCcccC
Q 001326 742 CGIIE-ISQD-ICCLSSLESLNLAENNFE-SLPSSISQLSCLRRLCLRNCNMLQSLPE---LPLGLRHLEASNCKRLQSF 815 (1099)
Q Consensus 742 ~~l~~-l~~~-~~~l~sL~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~---l~~sL~~L~i~~c~~L~~l 815 (1099)
|.+.. +|.. +..+++|+.|++++|.++ .+|..+. ++|+.|++++|+ ++.+|. ..++|+.|++++| .++.+
T Consensus 384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l 459 (520)
T 2z7x_B 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSV 459 (520)
T ss_dssp SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred CcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCcc
Confidence 99997 8876 888999999999999996 5565543 799999999985 558885 3478999999998 56666
Q ss_pred CC
Q 001326 816 PE 817 (1099)
Q Consensus 816 ~~ 817 (1099)
|.
T Consensus 460 ~~ 461 (520)
T 2z7x_B 460 PD 461 (520)
T ss_dssp CT
T ss_pred CH
Confidence 65
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.3e-30 Score=309.97 Aligned_cols=345 Identities=18% Similarity=0.243 Sum_probs=242.9
Q ss_pred CCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCCCCCCCceEEECCCCCccccccccccc
Q 001326 398 KMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSNFDLENLIELDLPYSKVEQLWEGEKEA 477 (1099)
Q Consensus 398 ~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l 477 (1099)
.+++|+.|.+.++.+..+ + ++ ...++|++|++++|.+..+|....+++|++|++++|.+..++. +..+
T Consensus 44 ~l~~l~~L~l~~~~i~~l---------~-~~-~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l 111 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI---------D-GV-EYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANL 111 (466)
T ss_dssp HHHTCCEEECCSSCCCCC---------T-TG-GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred HhccccEEecCCCCCccC---------c-ch-hhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCC
Confidence 345788888877765322 2 22 2345688888888888887774478888888888888887766 7778
Q ss_pred CCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCCCCccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccC
Q 001326 478 FKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSG 557 (1099)
Q Consensus 478 ~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~ 557 (1099)
++|++|++++|.+. .++.+..+++|++|++++|... .++ .++.+++|++|+++++ ...++....+++|+.|+
T Consensus 112 ~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~--- 183 (466)
T 1o6v_A 112 TNLTGLTLFNNQIT-DIDPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGNQ--VTDLKPLANLTTLERLD--- 183 (466)
T ss_dssp TTCCEEECCSSCCC-CCGGGTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEEES--CCCCGGGTTCTTCCEEE---
T ss_pred CCCCEEECCCCCCC-CChHHcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecCCc--ccCchhhccCCCCCEEE---
Confidence 88888888887643 3445777888888888877643 333 4777788888877532 22222222344444444
Q ss_pred CcCCCCCCCCCCCccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhc
Q 001326 558 CVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILE 637 (1099)
Q Consensus 558 ~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~ 637 (1099)
+++|.+..++. +..+++|++|++++|.+.+..+ ++.+++|+.|++++|..... ..+.
T Consensus 184 ------------------l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~ 240 (466)
T 1o6v_A 184 ------------------ISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLA 240 (466)
T ss_dssp ------------------CCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred ------------------CcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhh
Confidence 44444444433 6677788888888887666544 66677888888887765542 3567
Q ss_pred CCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEc
Q 001326 638 KMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCL 717 (1099)
Q Consensus 638 ~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L 717 (1099)
.+++|+.|++++|.+..++. +..+++|+.|++++|...+..+ +..+++|+.|++++|.+..++. +..+++|+.|++
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L 316 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTL 316 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEEC
T ss_pred cCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEEC
Confidence 77888888888888877665 7778888888888887665433 6778888888888888777665 677888888888
Q ss_pred cCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCC
Q 001326 718 SGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNML 791 (1099)
Q Consensus 718 ~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l 791 (1099)
++|.+...+++..+++|++|++++|.+..++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|+..
T Consensus 317 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 317 YFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred cCCcCCCchhhccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCccc
Confidence 8888777777777888888888888877763 57778888888888888876654 777888888888886543
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.5e-30 Score=315.24 Aligned_cols=411 Identities=17% Similarity=0.091 Sum_probs=276.0
Q ss_pred EeccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCCCCCCCceE
Q 001326 380 FLNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSNFDLENLIE 459 (1099)
Q Consensus 380 ~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~~~l~~L~~ 459 (1099)
.++++.+....+.+.+|.++++|+.|++++|.++ .++.+.+...++|++|++++|.++.+|.. .+++|++
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~---------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~ 125 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIR---------SLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRH 125 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC---------EECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSE
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCCC---------cCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCE
Confidence 3455555555555666666666666666666542 22223333344566666666666666665 6666666
Q ss_pred EECCCCCccccc--ccccccCCccEEeccCCCCCCcCCCCCCCCCc--cEEEeeCCCC--CCccCccccCCC--CCCEEE
Q 001326 460 LDLPYSKVEQLW--EGEKEAFKLKSIDLHQSHNLTRIPKQSEAPNL--ERINLWNCKN--LLYIPSHIQNFN--NLSMLS 531 (1099)
Q Consensus 460 L~L~~n~i~~l~--~~~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L--~~L~L~~~~~--l~~lp~~i~~l~--~L~~L~ 531 (1099)
|+|++|.++.++ ..+..+++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..+..+. .| .++
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~ 202 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLV 202 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceE-EEE
Confidence 666666666543 455666666666666665432 233333444 6666666655 445555555443 22 334
Q ss_pred cCCCCCcccCCCCC--CCCCCcEEEccCCcC----CCCCC---CCCCCccEEEecCcCC-----cccCccccCCCCCcEE
Q 001326 532 LRDCISLSCFPRNI--HFRSPVKIDFSGCVN----LTEFP---HISGNVVELKLFNTPI-----EEVPSSIESLPNLKIL 597 (1099)
Q Consensus 532 L~~~~~l~~lp~~~--~l~~L~~L~l~~~~~----l~~l~---~~~~~L~~L~l~~~~i-----~~lp~~i~~l~~L~~L 597 (1099)
+++|.....++... .+.+|+.++++++.. +.... ....+++.|++.++.+ ..++..+ ..++|++|
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L 281 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYL 281 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEE
Confidence 45544433333222 455666666665420 00000 0112344455544333 2333333 23589999
Q ss_pred EeCCccccccccccc-----ccCccccEEeccCCCCCCccc-hhhc---CCCCCCEEEccCCCCcccCcccccCCCCcEE
Q 001326 598 NLGFCKRLKRVSTGI-----CKLKYLRCLYLLDCSDLESFP-EILE---KMEPLEKLALDRSGIKELPSSIENLEGLKEL 668 (1099)
Q Consensus 598 ~L~~~~~~~~l~~~l-----~~l~~L~~L~L~~~~~~~~~~-~~l~---~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L 668 (1099)
++++|.+.+.+|..+ .+++.|+.+++..+.. .+| ..+. ...+|+.|++++|.+..++. ...+++|+.|
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L 358 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFL 358 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEE
T ss_pred EEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEE
Confidence 999999888888877 6677777777777665 444 2222 23679999999998876542 2678999999
Q ss_pred EccCCCCCCcccccccCCCCCceeecCCCCCccCC---ccccCCCCCcEEEccCCCCCC-CCC--CCCCCCCCEEeccCC
Q 001326 669 QLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLP---SSIADLNKLRELCLSGCRGFA-LPP--LSTLSSLRTLTLSGC 742 (1099)
Q Consensus 669 ~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~L~~~~~~~-l~~--l~~l~~L~~L~Ls~~ 742 (1099)
++++|...+..|..++.+++|+.|++++|.+..++ ..+..+++|+.|++++|.+.. +|. +..+++|++|++++|
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 99999999989999999999999999999999765 568899999999999999876 664 788999999999999
Q ss_pred CCcc-cccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCCCCCC----CCCCCeeecccCc
Q 001326 743 GIIE-ISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQSLPEL----PLGLRHLEASNCK 810 (1099)
Q Consensus 743 ~l~~-l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l----~~sL~~L~i~~c~ 810 (1099)
.++. +|..+. ++|+.|+|++|+++.+|..+..+++|+.|++++|+ ++.+|.. +++|+.|++++++
T Consensus 439 ~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 439 MLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 9974 444443 79999999999999999988899999999999975 5577753 3678889998876
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=6.3e-30 Score=301.19 Aligned_cols=333 Identities=23% Similarity=0.259 Sum_probs=198.5
Q ss_pred eeEEEeecCCCCcCCCCCCCCCceEEECCCCCcccccccccccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCCC
Q 001326 435 LRYLHWHECPLKSLPSNFDLENLIELDLPYSKVEQLWEGEKEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKNL 514 (1099)
Q Consensus 435 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l 514 (1099)
+++|++++|.++.+|.. +++|++|++++|.++.+|.. +.+|++|++++|.+. .++.+ .++|++|++++|...
T Consensus 73 l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~-~l~~~--~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLK-ALSDL--PPLLEYLGVSNNQLE 144 (454)
T ss_dssp CSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-CCCSC--CTTCCEEECCSSCCS
T ss_pred CCEEEecCCccccCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccC-cccCC--CCCCCEEECcCCCCC
Confidence 46666666666666652 35666666666666665542 256666666665432 22222 145666666665433
Q ss_pred CccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCccccCCCCC
Q 001326 515 LYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNL 594 (1099)
Q Consensus 515 ~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L 594 (1099)
.+| .++++++|++|++++|. ++.+|....+++.|++++|.+..+| .++.+++|
T Consensus 145 -~lp-~~~~l~~L~~L~l~~N~------------------------l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L 197 (454)
T 1jl5_A 145 -KLP-ELQNSSFLKIIDVDNNS------------------------LKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFL 197 (454)
T ss_dssp -SCC-CCTTCTTCCEEECCSSC------------------------CSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTC
T ss_pred -CCc-ccCCCCCCCEEECCCCc------------------------CcccCCCcccccEEECcCCcCCcCc-cccCCCCC
Confidence 245 35666666666666552 3334444456777777777777776 47777888
Q ss_pred cEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCC
Q 001326 595 KILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCS 674 (1099)
Q Consensus 595 ~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~ 674 (1099)
+.|++++|.+.+ +|.. .++|++|++++|... .+|. +..+++|++|++++|.++.+|.. +++|+.|++++|.
T Consensus 198 ~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 198 TAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY 268 (454)
T ss_dssp CEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC
T ss_pred CEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc
Confidence 888888777654 3332 247778888777655 5553 77778888888888877777653 3677888888777
Q ss_pred CCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCC
Q 001326 675 KLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCL 754 (1099)
Q Consensus 675 ~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l 754 (1099)
..+ +|.. +++|+.|++++|.+..+|.. .++|+.|++++|.+..++.+ .++|++|++++|.+..+|.. +
T Consensus 269 l~~-l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~~~--~~~L~~L~Ls~N~l~~lp~~---~ 336 (454)
T 1jl5_A 269 LTD-LPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIELPAL---P 336 (454)
T ss_dssp CSC-CCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEECCC--CTTCCEEECCSSCCSCCCCC---C
T ss_pred ccc-cCcc---cCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCcccCC--cCcCCEEECCCCcccccccc---C
Confidence 554 4432 36778888888877765532 26778888888777665532 24778888888877776654 4
Q ss_pred CCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCCCCCCCCCCCeeecccCcCcccCCCCchhhHHhhHhH
Q 001326 755 SSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQSLPELPLGLRHLEASNCKRLQSFPESPSCIEELHASL 829 (1099)
Q Consensus 755 ~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~i~~c~~L~~l~~~~~~L~~L~~~~ 829 (1099)
++|+.|++++|.++.+|. .+++|+.|++++|+ +..+|..|.++..|.. +.....+|..+.+|+.|++++
T Consensus 337 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~--n~~~~~i~~~~~~L~~L~ls~ 405 (454)
T 1jl5_A 337 PRLERLIASFNHLAEVPE---LPQNLKQLHVEYNP-LREFPDIPESVEDLRM--NSHLAEVPELPQNLKQLHVET 405 (454)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSSCCCCCTTCCEEEC--CC-------------------
T ss_pred CcCCEEECCCCccccccc---hhhhccEEECCCCC-CCcCCCChHHHHhhhh--cccccccccccCcCCEEECCC
Confidence 778888888888777776 46778888887754 3444444445554432 233344444455555555554
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.5e-29 Score=300.22 Aligned_cols=132 Identities=23% Similarity=0.267 Sum_probs=72.7
Q ss_pred CCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccC-CccccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEec
Q 001326 663 EGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQL-PSSIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTL 739 (1099)
Q Consensus 663 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~L 739 (1099)
++|+.|++++|...+..|..++.+++|++|++++|.+..+ |..+..+++|++|+|++|.+..+++ +..+++|++|+|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 4555555555555555555555555555555555555544 3355555555555555555544432 455555666666
Q ss_pred cCCCCccc-ccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCCCCCC
Q 001326 740 SGCGIIEI-SQDICCLSSLESLNLAENNFESLPSS-ISQLSCLRRLCLRNCNMLQSL 794 (1099)
Q Consensus 740 s~~~l~~l-~~~~~~l~sL~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~~l~~l 794 (1099)
++|.+..+ |..+..+++|++|+|++|+++.+|.. +..+++|+.|+|++|+.....
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 66655544 34455566666666666666555532 345556666666655544333
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=9.8e-29 Score=301.12 Aligned_cols=395 Identities=15% Similarity=0.100 Sum_probs=295.3
Q ss_pred CCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCC-CC-CCCCceEEECCCCCcccc-ccccc
Q 001326 399 MPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPS-NF-DLENLIELDLPYSKVEQL-WEGEK 475 (1099)
Q Consensus 399 l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l-~~~~~ 475 (1099)
+...+.++++++.++.+ |.++ +++|++|++++|.+..+|. .+ .+++|++|+|++|.++.+ |..+.
T Consensus 30 ~~~~~~l~ls~~~L~~i---------p~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 97 (562)
T 3a79_B 30 NELESMVDYSNRNLTHV---------PKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL 97 (562)
T ss_dssp ---CCEEECTTSCCCSC---------CTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred cCCCcEEEcCCCCCccC---------CCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence 34459999999887543 3333 3689999999999999985 44 899999999999999988 56689
Q ss_pred ccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCCCC-ccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCC--cE
Q 001326 476 EAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKNLL-YIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSP--VK 552 (1099)
Q Consensus 476 ~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L--~~ 552 (1099)
.+++|++|+|++|.+. .+|.. .+++|++|++++|.... .+|..++++++|++|++++|..... ....+.+| +.
T Consensus 98 ~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~ 173 (562)
T 3a79_B 98 FNQDLEYLDVSHNRLQ-NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSC 173 (562)
T ss_dssp TCTTCCEEECTTSCCC-EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEE
T ss_pred CCCCCCEEECCCCcCC-ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeE
Confidence 9999999999999855 67766 89999999999998665 3568999999999999999854331 11245556 99
Q ss_pred EEccCCcC--CCCCCCCCCCcc----EEEecCcCCcc-cC-ccccCCCCCcEEEeCCc----------------------
Q 001326 553 IDFSGCVN--LTEFPHISGNVV----ELKLFNTPIEE-VP-SSIESLPNLKILNLGFC---------------------- 602 (1099)
Q Consensus 553 L~l~~~~~--l~~l~~~~~~L~----~L~l~~~~i~~-lp-~~i~~l~~L~~L~L~~~---------------------- 602 (1099)
|+++++.. ....|.....+. .+++++|.+.. ++ ..+..+++|+.|++++|
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 99998865 333343333221 33444444432 12 12344555666665554
Q ss_pred ------ccccc----cccccccCccccEEeccCCCCCCccchhh-----cCCCCCCEEEccCCCCcccCc-cccc---CC
Q 001326 603 ------KRLKR----VSTGICKLKYLRCLYLLDCSDLESFPEIL-----EKMEPLEKLALDRSGIKELPS-SIEN---LE 663 (1099)
Q Consensus 603 ------~~~~~----l~~~l~~l~~L~~L~L~~~~~~~~~~~~l-----~~l~~L~~L~L~~~~l~~lp~-~l~~---l~ 663 (1099)
...+. ++.. ...++|++|++++|...+.+|..+ ..++.|+.+++..+.+ .+|. ++.. ..
T Consensus 254 L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEM 331 (562)
T ss_dssp EEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTC
T ss_pred EEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccC
Confidence 22211 1111 123489999999999887888776 6777777777777777 6663 3332 37
Q ss_pred CCcEEEccCCCCCCcccccccCCCCCceeecCCCCCcc-CCccccCCCCCcEEEccCCCCCCCCC----CCCCCCCCEEe
Q 001326 664 GLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQ-LPSSIADLNKLRELCLSGCRGFALPP----LSTLSSLRTLT 738 (1099)
Q Consensus 664 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~L~~~~~~~l~~----l~~l~~L~~L~ 738 (1099)
+|+.|++++|...... ....+++|++|++++|.+.. .|..+..+++|+.|++++|.+..++. +..+++|++|+
T Consensus 332 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 332 NIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred cceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 8999999999865432 12688999999999999997 68899999999999999999887663 78999999999
Q ss_pred ccCCCCcc-cccc-cCCCCCCCEEEccCCCCc-cccccccCCCCCCEEeecCCCCCCCCCCC---CCCCCeeecccCcCc
Q 001326 739 LSGCGIIE-ISQD-ICCLSSLESLNLAENNFE-SLPSSISQLSCLRRLCLRNCNMLQSLPEL---PLGLRHLEASNCKRL 812 (1099)
Q Consensus 739 Ls~~~l~~-l~~~-~~~l~sL~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~sL~~L~i~~c~~L 812 (1099)
+++|.+.. +|.. +..+++|+.|++++|.++ .+|..+. ++|+.|++++| .++.+|.. .++|+.|++++|. +
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l 485 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-L 485 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-C
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-C
Confidence 99999997 8775 788999999999999997 4554443 79999999997 56688853 4789999999974 5
Q ss_pred ccCCC
Q 001326 813 QSFPE 817 (1099)
Q Consensus 813 ~~l~~ 817 (1099)
+.+|.
T Consensus 486 ~~l~~ 490 (562)
T 3a79_B 486 KSVPD 490 (562)
T ss_dssp CCCCT
T ss_pred CCCCH
Confidence 66665
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=7.5e-29 Score=294.70 Aligned_cols=342 Identities=18% Similarity=0.221 Sum_probs=277.5
Q ss_pred ccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCCCCCCCceEEE
Q 001326 382 NLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSNFDLENLIELD 461 (1099)
Q Consensus 382 ~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~ 461 (1099)
+++......++ .|..+++|+.|++++|.++..+ . .....+|++|++++|.+..++....+++|++|+
T Consensus 52 ~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~---------~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 118 (466)
T 1o6v_A 52 QADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT---------P--LKNLTKLVDILMNNNQIADITPLANLTNLTGLT 118 (466)
T ss_dssp ECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCG---------G--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred ecCCCCCccCc--chhhhcCCCEEECCCCccCCch---------h--hhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence 34444333444 3888999999999999875432 1 334567999999999999999855899999999
Q ss_pred CCCCCcccccccccccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCCCCccCccccCCCCCCEEEcCCCCCcccC
Q 001326 462 LPYSKVEQLWEGEKEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSLRDCISLSCF 541 (1099)
Q Consensus 462 L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~l 541 (1099)
+++|.++.++. +..+++|++|++++|.+ ..++.+..+++|++|++.++ ...++ .++++++|++|++++|. +..+
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~~--~~~~~-~~~~l~~L~~L~l~~n~-l~~~ 192 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFGNQ--VTDLK-PLANLTTLERLDISSNK-VSDI 192 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEEEE-CCCGGGTTCTTCSEEEEEES--CCCCG-GGTTCTTCCEEECCSSC-CCCC
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCCcc-CCChhhccCCcccEeecCCc--ccCch-hhccCCCCCEEECcCCc-CCCC
Confidence 99999999876 88999999999999974 44677899999999999753 23333 38999999999999985 3334
Q ss_pred CCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEE
Q 001326 542 PRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCL 621 (1099)
Q Consensus 542 p~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L 621 (1099)
+....+++|+.|+++ +|.+..++. ++.+++|+.|++++|.+... ..+..+++|+.|
T Consensus 193 ~~l~~l~~L~~L~l~---------------------~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 248 (466)
T 1o6v_A 193 SVLAKLTNLESLIAT---------------------NNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 248 (466)
T ss_dssp GGGGGCTTCSEEECC---------------------SSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred hhhccCCCCCEEEec---------------------CCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEE
Confidence 332245555555554 455555544 66788899999998876553 357788999999
Q ss_pred eccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCcc
Q 001326 622 YLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQ 701 (1099)
Q Consensus 622 ~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~ 701 (1099)
++++|......+ +..+++|+.|++++|.++.++. +..+++|+.|++++|...+..+ +..+++|+.|++++|.+..
T Consensus 249 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 249 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred ECCCCccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence 999988766544 8889999999999999998877 8889999999999998776544 7889999999999999998
Q ss_pred CCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCcccccc
Q 001326 702 LPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSS 773 (1099)
Q Consensus 702 lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~ 773 (1099)
++. +..+++|+.|++++|.+..++.+..+++|+.|++++|.+..+++ +..+++|+.|++++|.++.+|..
T Consensus 324 ~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 324 ISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBC
T ss_pred chh-hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchh
Confidence 765 78999999999999999888889999999999999999998766 88999999999999999988754
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=2.1e-29 Score=296.74 Aligned_cols=352 Identities=22% Similarity=0.278 Sum_probs=228.2
Q ss_pred CCeeEEEeecCCCCcCCCCC-CCCCceEEECCCCCcc-cccccccccCCc-------------cEEeccCCCCCCcCCCC
Q 001326 433 DGLRYLHWHECPLKSLPSNF-DLENLIELDLPYSKVE-QLWEGEKEAFKL-------------KSIDLHQSHNLTRIPKQ 497 (1099)
Q Consensus 433 ~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~-~l~~~~~~l~~L-------------~~L~Ls~~~~l~~~~~~ 497 (1099)
..|++|++++|.+..+|..+ ++++|++|++++|.+. .+|.++..+.+| ++|++++|. ++.+|.+
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC
Confidence 56999999999999999877 8999999999999887 678888877765 888888886 4445553
Q ss_pred CCCCCccEEEeeCCCCCCccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCC--CCCccEEE
Q 001326 498 SEAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHI--SGNVVELK 575 (1099)
Q Consensus 498 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~--~~~L~~L~ 575 (1099)
.++|++|++++|.... +|.. +++|++|++++| .+..+|.. .++|++|++++|. ++.+|.+ ..+|+.|+
T Consensus 90 --~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n-~l~~l~~~--~~~L~~L~L~~n~-l~~lp~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 --PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNN-NLKALSDL--PPLLEYLGVSNNQ-LEKLPELQNSSFLKIID 159 (454)
T ss_dssp --CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSS-CCSCCCSC--CTTCCEEECCSSC-CSSCCCCTTCTTCCEEE
T ss_pred --cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCC-ccCcccCC--CCCCCEEECcCCC-CCCCcccCCCCCCCEEE
Confidence 4688888888876544 6643 477888888887 34444432 2577888887763 4446532 23567788
Q ss_pred ecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCccc
Q 001326 576 LFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKEL 655 (1099)
Q Consensus 576 l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l 655 (1099)
+++|.+..+|..+ .+|++|++++|.+.+ +| .++.+++|+.|++++|...+ +|.. .++|+.|++++|.++.+
T Consensus 160 l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~l 230 (454)
T 1jl5_A 160 VDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILEEL 230 (454)
T ss_dssp CCSSCCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSSC
T ss_pred CCCCcCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCCcc
Confidence 8887777777543 477788888777655 45 57777888888887776554 3322 24778888888877777
Q ss_pred CcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCC
Q 001326 656 PSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLR 735 (1099)
Q Consensus 656 p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~ 735 (1099)
|. +..+++|+.|++++|...+ +|. .+++|+.|++++|.+..+|.. +++|+.|++++|.+..++.+. ++|+
T Consensus 231 p~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~--~~L~ 300 (454)
T 1jl5_A 231 PE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELP--PNLY 300 (454)
T ss_dssp CC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCC--TTCC
T ss_pred cc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcC--CcCC
Confidence 74 7777888888888776554 443 236778888888877777654 367788888888776655432 6788
Q ss_pred EEeccCCCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCCCCCCCCCCCeeecccCcCcccC
Q 001326 736 TLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQSLPELPLGLRHLEASNCKRLQSF 815 (1099)
Q Consensus 736 ~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~i~~c~~L~~l 815 (1099)
.|++++|.+..++.. .++|+.|++++|+++.+|.. +++|+.|++++| .++.+|..+++|+.|++++|. +..+
T Consensus 301 ~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~~N~-l~~l 372 (454)
T 1jl5_A 301 YLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHVEYNP-LREF 372 (454)
T ss_dssp EEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSSC
T ss_pred EEECcCCcCCcccCC---cCcCCEEECCCCcccccccc---CCcCCEEECCCC-ccccccchhhhccEEECCCCC-CCcC
Confidence 888888877765531 25788888888888877754 577888888876 455677777788888887764 4444
Q ss_pred CCCchhh
Q 001326 816 PESPSCI 822 (1099)
Q Consensus 816 ~~~~~~L 822 (1099)
|..|..+
T Consensus 373 ~~ip~~l 379 (454)
T 1jl5_A 373 PDIPESV 379 (454)
T ss_dssp CCCCTTC
T ss_pred CCChHHH
Confidence 4444433
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2.4e-28 Score=289.88 Aligned_cols=338 Identities=18% Similarity=0.159 Sum_probs=254.2
Q ss_pred CCCCeeEEEeecCCCCcCC-CCC-CCCCceEEECCCCCcc-cc-cccccccCCccEEeccCCCCCCcCCC-CCCCCCccE
Q 001326 431 LPDGLRYLHWHECPLKSLP-SNF-DLENLIELDLPYSKVE-QL-WEGEKEAFKLKSIDLHQSHNLTRIPK-QSEAPNLER 505 (1099)
Q Consensus 431 ~~~~Lr~L~l~~~~l~~lp-~~~-~l~~L~~L~L~~n~i~-~l-~~~~~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~ 505 (1099)
.+++|++|++++|.+..++ ..+ .+++|++|+|++|.+. .+ +..+..+++|++|+|++|.+....|. +..+++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 3456777777777777663 334 6777777777777665 34 34456677777777777766555443 567777777
Q ss_pred EEeeCCCCCCccCcc--ccCCCCCCEEEcCCCCCcccCCCC-C-CCCCCcEEEccCCcCCCCCCCCC-----CCccEEEe
Q 001326 506 INLWNCKNLLYIPSH--IQNFNNLSMLSLRDCISLSCFPRN-I-HFRSPVKIDFSGCVNLTEFPHIS-----GNVVELKL 576 (1099)
Q Consensus 506 L~L~~~~~l~~lp~~--i~~l~~L~~L~L~~~~~l~~lp~~-~-~l~~L~~L~l~~~~~l~~l~~~~-----~~L~~L~l 576 (1099)
|++++|......|.. ++.+++|++|++++|......|.. + .+++|++|+++++......+... .+++.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 777777655544443 677777777777776554444553 2 66777777777765443333322 35678888
Q ss_pred cCcCCcccCcc---------ccCCCCCcEEEeCCcccccccccccccC---ccccEEeccCCCCCCccc----------h
Q 001326 577 FNTPIEEVPSS---------IESLPNLKILNLGFCKRLKRVSTGICKL---KYLRCLYLLDCSDLESFP----------E 634 (1099)
Q Consensus 577 ~~~~i~~lp~~---------i~~l~~L~~L~L~~~~~~~~l~~~l~~l---~~L~~L~L~~~~~~~~~~----------~ 634 (1099)
+++.+..++.. +..+++|+.|++++|.+.+..|..+..+ ++|+.|++++|....... .
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 88888776643 3466899999999999888887776554 889999999886543211 1
Q ss_pred hhc--CCCCCCEEEccCCCCccc-CcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccC-CccccCCC
Q 001326 635 ILE--KMEPLEKLALDRSGIKEL-PSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQL-PSSIADLN 710 (1099)
Q Consensus 635 ~l~--~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~ 710 (1099)
.+. ..++|+.|++++|.+..+ |..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+..+ |..+..++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 122 246899999999999864 67789999999999999999988888999999999999999999977 56789999
Q ss_pred CCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCcccccc-cCCCCCCCEEEccCCCCc
Q 001326 711 KLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQD-ICCLSSLESLNLAENNFE 768 (1099)
Q Consensus 711 ~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~~-~~~l~sL~~L~L~~n~l~ 768 (1099)
+|++|+|++|.+..+++ +..+++|++|++++|.+..+|.. +..+++|+.|++++|.++
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 99999999999887744 88999999999999999998775 689999999999999987
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=3.8e-28 Score=301.14 Aligned_cols=421 Identities=22% Similarity=0.200 Sum_probs=276.7
Q ss_pred EeccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCC-C-CCCCc
Q 001326 380 FLNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSN-F-DLENL 457 (1099)
Q Consensus 380 ~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~-~-~l~~L 457 (1099)
.||++.+....+++.+|.++++|++|++++|.+ ..++.+.+....+|++|++++|.++.+|.. | .+++|
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i---------~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---------QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCC---------CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC---------CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 577888887888888888888888888888866 234555555567788888888888888864 3 78888
Q ss_pred eEEECCCCCccccccc-ccccCCccEEeccCCCCCC-cCCC-CCCCCCccEEEeeCCCCCCccCccccCCCCCC----EE
Q 001326 458 IELDLPYSKVEQLWEG-EKEAFKLKSIDLHQSHNLT-RIPK-QSEAPNLERINLWNCKNLLYIPSHIQNFNNLS----ML 530 (1099)
Q Consensus 458 ~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~~~~l~-~~~~-~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~----~L 530 (1099)
++|+|++|+++.++.. +..+++|++|++++|.+.. ..|. +..+++|++|++++|......+..+..+.+++ .+
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 206 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhh
Confidence 8888888888888764 6888888888888887644 2344 47788888888888876655566655544433 45
Q ss_pred EcCCCCCcccCCCCCCCCCCcEEEccCCc---------------------------CCCCC-------------------
Q 001326 531 SLRDCISLSCFPRNIHFRSPVKIDFSGCV---------------------------NLTEF------------------- 564 (1099)
Q Consensus 531 ~L~~~~~l~~lp~~~~l~~L~~L~l~~~~---------------------------~l~~l------------------- 564 (1099)
+++.|.....-+.......+..+++.++. ....+
T Consensus 207 ~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 207 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred hcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 55554322211111122222222222110 00000
Q ss_pred ---------------CCCCCCccEEEecCcCCcccCccccCCCCCcEEEeCCccccccc-------------------cc
Q 001326 565 ---------------PHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRV-------------------ST 610 (1099)
Q Consensus 565 ---------------~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l-------------------~~ 610 (1099)
.....+++.+.+.++.+..++. +.....|+.|++.+|.+.... +.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhhhcccccchhhhhhhhcccccccccccccccccc-cccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence 0001123333333333333322 333445555555555432211 11
Q ss_pred ccccCccccEEeccCCCCCC--ccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCccc-ccccCCC
Q 001326 611 GICKLKYLRCLYLLDCSDLE--SFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLP-ESLGNLK 687 (1099)
Q Consensus 611 ~l~~l~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~ 687 (1099)
....+++|+.|++++|.... ..+..+..+.+|+.|++..+....++..+..+++|+.+++.++......+ ..+..++
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 23356677777777766532 34455666777888888777777777777788888888888777655443 4467788
Q ss_pred CCceeecCCCCCccC-CccccCCCCCcEEEccCCCCCC--CC-CCCCCCCCCEEeccCCCCccc-ccccCCCCCCCEEEc
Q 001326 688 SLVVLDANRSAILQL-PSSIADLNKLRELCLSGCRGFA--LP-PLSTLSSLRTLTLSGCGIIEI-SQDICCLSSLESLNL 762 (1099)
Q Consensus 688 ~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~--l~-~l~~l~~L~~L~Ls~~~l~~l-~~~~~~l~sL~~L~L 762 (1099)
+++.++++.|.+... +..+..+++|+.|++++|.... .| .+..+++|++|+|++|.+..+ |..+.++++|++|+|
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 888888888888755 5567778888888888886332 33 277888888888888888876 455888888888888
Q ss_pred cCCCCcccc-ccccCCCCCCEEeecCCCCCCCCCC----CCCCCCeeecccCc
Q 001326 763 AENNFESLP-SSISQLSCLRRLCLRNCNMLQSLPE----LPLGLRHLEASNCK 810 (1099)
Q Consensus 763 ~~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~----l~~sL~~L~i~~c~ 810 (1099)
++|+++.++ ..+..+++|+.|+|++|+.....|+ ++++|+.|+++++|
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 888888775 4577888888888888766555553 33578888887764
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.9e-28 Score=278.14 Aligned_cols=299 Identities=20% Similarity=0.205 Sum_probs=182.0
Q ss_pred eeEEEeecCCCCcCCCCCCCCCceEEECCCCCcccccccccccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCCC
Q 001326 435 LRYLHWHECPLKSLPSNFDLENLIELDLPYSKVEQLWEGEKEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKNL 514 (1099)
Q Consensus 435 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l 514 (1099)
|+.|+++++.+..+|....+++|++|++++|.++.++. +..+++|++|++++|.+ ..++.+..+++|++|++++|...
T Consensus 46 L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~l~~n~i~ 123 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKI-TDISALQNLTNLRELYLNEDNIS 123 (347)
T ss_dssp CSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEECTTSCCC
T ss_pred ccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcc-cCchHHcCCCcCCEEECcCCccc
Confidence 44444445555555443355566666666666655544 55556666666665542 23444555566666666555432
Q ss_pred CccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCccccCCCCC
Q 001326 515 LYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNL 594 (1099)
Q Consensus 515 ~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L 594 (1099)
.++. +..+++|++|++++|.....++. +..+++|
T Consensus 124 -~~~~-~~~l~~L~~L~l~~n~~~~~~~~--------------------------------------------~~~l~~L 157 (347)
T 4fmz_A 124 -DISP-LANLTKMYSLNLGANHNLSDLSP--------------------------------------------LSNMTGL 157 (347)
T ss_dssp -CCGG-GTTCTTCCEEECTTCTTCCCCGG--------------------------------------------GTTCTTC
T ss_pred -Cchh-hccCCceeEEECCCCCCcccccc--------------------------------------------hhhCCCC
Confidence 2332 55666666666665533322221 3344444
Q ss_pred cEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCC
Q 001326 595 KILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCS 674 (1099)
Q Consensus 595 ~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~ 674 (1099)
++|++++|......+ +..+++|++|++++|...... . +..+++|+.|++++|.+..++. +..+++|+.|++++|.
T Consensus 158 ~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS-P-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK 232 (347)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCG-G-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred cEEEecCCCcCCchh--hccCCCCCEEEccCCcccccc-c-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc
Confidence 555555444333222 445555555555555443322 2 5566667777777776666554 6667777777777776
Q ss_pred CCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCccc-ccccCC
Q 001326 675 KLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEI-SQDICC 753 (1099)
Q Consensus 675 ~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l-~~~~~~ 753 (1099)
.....+ +..+++|++|++++|.+..+ ..+..+++|+.|++++|.+..++.+..+++|+.|++++|.+... +..+..
T Consensus 233 l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 309 (347)
T 4fmz_A 233 ITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309 (347)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred cCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence 554333 66777777777777777765 35677778888888888777777677788888888888888754 445777
Q ss_pred CCCCCEEEccCCCCccccccccCCCCCCEEeecCCCC
Q 001326 754 LSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNM 790 (1099)
Q Consensus 754 l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~ 790 (1099)
+++|+.|++++|.++.++. +..+++|+.|++++|+.
T Consensus 310 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 310 LTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred cccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 8888888888888887765 77788888888888753
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=9.3e-28 Score=273.96 Aligned_cols=301 Identities=22% Similarity=0.277 Sum_probs=241.3
Q ss_pred CCCCceEEECCCCCcccccccccccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCCCCccCccccCCCCCCEEEc
Q 001326 453 DLENLIELDLPYSKVEQLWEGEKEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSL 532 (1099)
Q Consensus 453 ~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 532 (1099)
.+++|+.|+++++.+..++ ++..+++|++|++++|.+. .++.+..+++|++|++++|... .++ .+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQIT-DISPLSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccch-hhhhcCCccEEEccCCccc-cchhhhcCCcCCEEEccCCccc-Cch-HHcCCCcCCEEEC
Confidence 5677777777777777664 3666777777777777533 3333666667777777666433 232 4566666666666
Q ss_pred CCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCccccCCCCCcEEEeCCccccccccccc
Q 001326 533 RDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGI 612 (1099)
Q Consensus 533 ~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l 612 (1099)
++| .+..++. +..+++|+.|++++|.....++. +
T Consensus 118 ~~n--------------------------------------------~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~ 151 (347)
T 4fmz_A 118 NED--------------------------------------------NISDISP-LANLTKMYSLNLGANHNLSDLSP-L 151 (347)
T ss_dssp TTS--------------------------------------------CCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-G
T ss_pred cCC--------------------------------------------cccCchh-hccCCceeEEECCCCCCcccccc-h
Confidence 554 3444444 77889999999999987766555 8
Q ss_pred ccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCcee
Q 001326 613 CKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVL 692 (1099)
Q Consensus 613 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 692 (1099)
..+++|++|++++|......+ +..+++|+.|++++|.+..++. +..+++|+.|++++|......+ +..+++|+.|
T Consensus 152 ~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L 226 (347)
T 4fmz_A 152 SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSL 226 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred hhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEE
Confidence 999999999999998765544 8899999999999999998887 8899999999999998776554 8899999999
Q ss_pred ecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCcc-cc
Q 001326 693 DANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFES-LP 771 (1099)
Q Consensus 693 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~-lp 771 (1099)
++++|.+..++. +..+++|++|++++|.+..++.+..+++|++|++++|.+..++ .+..+++|+.|++++|.++. .|
T Consensus 227 ~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 227 KIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp ECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGH
T ss_pred EccCCccCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcCh
Confidence 999999999877 8999999999999999998888999999999999999999884 57889999999999999984 45
Q ss_pred ccccCCCCCCEEeecCCCCCCCCC-CCCCCCCeeecccCc
Q 001326 772 SSISQLSCLRRLCLRNCNMLQSLP-ELPLGLRHLEASNCK 810 (1099)
Q Consensus 772 ~~l~~l~~L~~L~L~~c~~l~~lp-~l~~sL~~L~i~~c~ 810 (1099)
..+..+++|+.|++++|+.....| ..+++|+.|++++|+
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC-
T ss_pred hHhhccccCCEEEccCCccccccChhhhhccceeehhhhc
Confidence 678999999999999998555444 345788999998875
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.7e-27 Score=284.37 Aligned_cols=310 Identities=21% Similarity=0.201 Sum_probs=247.4
Q ss_pred eEEEeecCCCCcCCCCCCCCCceEEECCCCCccccc-ccccccCCccEEeccCCCCCCcCCC-CCCCCCccEEEeeCCCC
Q 001326 436 RYLHWHECPLKSLPSNFDLENLIELDLPYSKVEQLW-EGEKEAFKLKSIDLHQSHNLTRIPK-QSEAPNLERINLWNCKN 513 (1099)
Q Consensus 436 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L~L~~~~~ 513 (1099)
+.++.+++.++.+|..+ +++|++|+|++|+++.++ ..+..+++|++|+|++|.+....|. +..+++|++|+|++|..
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 45677777777777655 467888888888887774 4567777777777777765555443 56777777777777664
Q ss_pred CCccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCccc-CccccCCC
Q 001326 514 LLYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEV-PSSIESLP 592 (1099)
Q Consensus 514 l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~l-p~~i~~l~ 592 (1099)
....+..+.++++|++|+|++|. +..+ |..+..++
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~--------------------------------------------i~~~~~~~~~~l~ 128 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENK--------------------------------------------IVILLDYMFQDLY 128 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSC--------------------------------------------CCEECTTTTTTCT
T ss_pred CccCcccccCCCCCCEEECCCCc--------------------------------------------cccCChhHccccc
Confidence 43333446677777777776652 2222 33467778
Q ss_pred CCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCc-ccccCCCCcEEEcc
Q 001326 593 NLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPS-SIENLEGLKELQLM 671 (1099)
Q Consensus 593 ~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~ 671 (1099)
+|+.|++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.+..++. .+..+++|+.|+++
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence 88888888888877777788888999999999988777777788999999999999999987654 67889999999999
Q ss_pred CCCCCCcccccccCCCCCceeecCCCCCccCCc-cccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCccc-
Q 001326 672 CCSKLGSLPESLGNLKSLVVLDANRSAILQLPS-SIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEI- 747 (1099)
Q Consensus 672 ~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l- 747 (1099)
+|...+.+|.......+|+.|++++|.+..+|. .+..+++|+.|+|++|.+..++. +..+++|++|+|++|.+..+
T Consensus 209 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (477)
T 2id5_A 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288 (477)
T ss_dssp CCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC
T ss_pred CCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC
Confidence 999998888887777899999999999999884 68899999999999999887765 78899999999999999975
Q ss_pred ccccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCCC
Q 001326 748 SQDICCLSSLESLNLAENNFESLPS-SISQLSCLRRLCLRNCNM 790 (1099)
Q Consensus 748 ~~~~~~l~sL~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~ 790 (1099)
|..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+.
T Consensus 289 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp TTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred HHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 5678999999999999999998875 467899999999999864
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=7.7e-27 Score=270.79 Aligned_cols=300 Identities=16% Similarity=0.126 Sum_probs=150.1
Q ss_pred CCCCceEEECCCCCcccccccc-cccCCccEEeccCCCCCCcCC-CCCCCCCccEEEeeCCCCCCccCccccCCCCCCEE
Q 001326 453 DLENLIELDLPYSKVEQLWEGE-KEAFKLKSIDLHQSHNLTRIP-KQSEAPNLERINLWNCKNLLYIPSHIQNFNNLSML 530 (1099)
Q Consensus 453 ~l~~L~~L~L~~n~i~~l~~~~-~~l~~L~~L~Ls~~~~l~~~~-~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 530 (1099)
.+.+|+.|+++++.++.+|..+ ..+++|++|++++|.+....+ .+..+++|++|+|++|......|..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4555666666666666665543 556666666666665443333 35566666666666665544445556666666666
Q ss_pred EcCCCCCcccCCCCC--CCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccC-ccccCCCCCcEEEeCCcccccc
Q 001326 531 SLRDCISLSCFPRNI--HFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVP-SSIESLPNLKILNLGFCKRLKR 607 (1099)
Q Consensus 531 ~L~~~~~l~~lp~~~--~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~ 607 (1099)
++++|. +..+|..+ .+++|++|++++ |.+..++ ..+..+++|+.|++++|.+...
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~---------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSN---------------------NNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCS---------------------SCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCC---------------------CccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 666652 22222211 122222222211 2222222 2344555566666655554332
Q ss_pred cccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCC
Q 001326 608 VSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLK 687 (1099)
Q Consensus 608 l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~ 687 (1099)
.+..+++|+.|++++|.... +...++|+.|++++|.+..+|.. ..+
T Consensus 181 ---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~--------------------------~~~ 226 (390)
T 3o6n_A 181 ---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP--------------------------VNV 226 (390)
T ss_dssp ---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC--------------------------CCS
T ss_pred ---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeecccc--------------------------ccc
Confidence 13344455555554443221 12233444444444444444332 124
Q ss_pred CCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCC
Q 001326 688 SLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAEN 765 (1099)
Q Consensus 688 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n 765 (1099)
+|+.|++++|.+... ..+..+++|++|++++|.+...++ +..+++|++|++++|.+..+|..+..+++|+.|+|++|
T Consensus 227 ~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 227 ELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp SCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS
T ss_pred cccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC
Confidence 455555555555443 244555555555555555444322 45555666666666666555555555666666666666
Q ss_pred CCccccccccCCCCCCEEeecCCCCCCCCCCCCCCCCeeecccC
Q 001326 766 NFESLPSSISQLSCLRRLCLRNCNMLQSLPELPLGLRHLEASNC 809 (1099)
Q Consensus 766 ~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~i~~c 809 (1099)
.++.+|..+..+++|+.|++++|+....-...+++|+.|+++++
T Consensus 306 ~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 306 HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred cceecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCC
Confidence 66666655555666666666665432221233455555555554
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.4e-26 Score=272.95 Aligned_cols=307 Identities=18% Similarity=0.134 Sum_probs=193.6
Q ss_pred HhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCCCCCCCceEEECCCCCcccccccc
Q 001326 395 VFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSNFDLENLIELDLPYSKVEQLWEGE 474 (1099)
Q Consensus 395 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~ 474 (1099)
.+.++++|+.|++++|.+++. + ++ ...++|++|++++|.++.+| ...+++|++|++++|.++.++ +
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~---------~-~l-~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~ 102 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM---------T-GI-EKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--V 102 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC---------T-TG-GGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--C
T ss_pred ChhHcCCCCEEEccCCCcccC---------h-hh-cccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--c
Confidence 466788999999998876432 2 22 23467899999999888886 447888999999999888874 7
Q ss_pred cccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCCCCccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEE
Q 001326 475 KEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKID 554 (1099)
Q Consensus 475 ~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~ 554 (1099)
..+++|++|++++|.+.. +| +..+++|++|++++|.... ++ ++.+++|++|++++|..+..++ ...+++|+.|+
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ 176 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLD 176 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEE
T ss_pred CCCCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEE
Confidence 788888999998887544 44 7888888888888887544 33 7788888888888886655552 22455555555
Q ss_pred ccCCcCCCCCCCCCCCccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccch
Q 001326 555 FSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPE 634 (1099)
Q Consensus 555 l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~ 634 (1099)
+++ |.+..+| +..+++|+.|++++|.+.+. .++.+++|+.|++++|...+ +|
T Consensus 177 ls~---------------------n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip- 228 (457)
T 3bz5_A 177 CSF---------------------NKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID- 228 (457)
T ss_dssp CCS---------------------SCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-
T ss_pred CCC---------------------Cccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-
Confidence 555 4444444 44555555555555554442 24555555555555555444 33
Q ss_pred hhcCCCCCCEEEccCCCCcccCcccccCCCC----------cEEEccCCCCCCcccccccCCCCCceeecCCCCCc-cCC
Q 001326 635 ILEKMEPLEKLALDRSGIKELPSSIENLEGL----------KELQLMCCSKLGSLPESLGNLKSLVVLDANRSAIL-QLP 703 (1099)
Q Consensus 635 ~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L----------~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp 703 (1099)
+..+++|+.|++++|.++.+| +..+++| +.|++++|...+.+| ++.+++|+.|++++|... .+|
T Consensus 229 -~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred -ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 455555555555555555544 2333333 444455555555544 345566666666666432 222
Q ss_pred ccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccc
Q 001326 704 SSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESL 770 (1099)
Q Consensus 704 ~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~l 770 (1099)
. ..++|+.|+++ .+++|++|++++|.++.++ +..+++|+.|++++|+++.+
T Consensus 304 ~---~~~~L~~L~l~-----------~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 304 C---QAAGITELDLS-----------QNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp C---TTCCCSCCCCT-----------TCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBC
T ss_pred c---CCCcceEechh-----------hcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCc
Confidence 1 22333333333 3357777777777777653 66777777777777776653
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.3e-26 Score=269.00 Aligned_cols=300 Identities=15% Similarity=0.148 Sum_probs=176.2
Q ss_pred CeeEEEeecCCCCcCCCCC--CCCCceEEECCCCCcccccc-cccccCCccEEeccCCCCCCcCCC-CCCCCCccEEEee
Q 001326 434 GLRYLHWHECPLKSLPSNF--DLENLIELDLPYSKVEQLWE-GEKEAFKLKSIDLHQSHNLTRIPK-QSEAPNLERINLW 509 (1099)
Q Consensus 434 ~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L~L~ 509 (1099)
++++|+++++.+..+|..+ .+++|++|+|++|.++.++. .+..+++|++|++++|.+....|. +..+++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 4555555555555555543 45555555555555555543 445555555555555554444333 4555556666665
Q ss_pred CCCCCCccCcc-ccCCCCCCEEEcCCCCCcccCCCCC-CCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCcc
Q 001326 510 NCKNLLYIPSH-IQNFNNLSMLSLRDCISLSCFPRNI-HFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSS 587 (1099)
Q Consensus 510 ~~~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~ 587 (1099)
+|... .+|.. ++++++|++|++++|......|..+ .+++|+.|++++ |.+..++
T Consensus 126 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~~-- 181 (390)
T 3o6n_A 126 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS---------------------NRLTHVD-- 181 (390)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS---------------------SCCSBCC--
T ss_pred CCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC---------------------CcCCccc--
Confidence 55433 33333 3555666666666553332222222 334444444433 2233322
Q ss_pred ccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcE
Q 001326 588 IESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKE 667 (1099)
Q Consensus 588 i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~ 667 (1099)
+..+++|+.|++++|.+.. +...++|+.|++++|..... +. ..+++|+.|++++|.++.. ..+..+++|+.
T Consensus 182 ~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~ 252 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-AWLLNYPGLVE 252 (390)
T ss_dssp GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSE
T ss_pred cccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-HHHcCCCCccE
Confidence 3445666666666665432 23345677777777665433 22 2346888888888888776 46788888888
Q ss_pred EEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCC-CCCCCCCCEEeccCCCCcc
Q 001326 668 LQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPP-LSTLSSLRTLTLSGCGIIE 746 (1099)
Q Consensus 668 L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~ 746 (1099)
|++++|.+.+..|..+..+++|+.|++++|.+..+|..+..+++|++|++++|.+..+|. +..+++|++|++++|.+..
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred EECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce
Confidence 888888877777777888888888888888877776666666666666666666555443 4455566666666666655
Q ss_pred cccccCCCCCCCEEEccCCCCc
Q 001326 747 ISQDICCLSSLESLNLAENNFE 768 (1099)
Q Consensus 747 l~~~~~~l~sL~~L~L~~n~l~ 768 (1099)
++ +..+++|+.|++++|.+.
T Consensus 333 ~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 333 LK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CC--CCTTCCCSEEECCSSCEE
T ss_pred eC--chhhccCCEEEcCCCCcc
Confidence 53 445566666666666554
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=2.3e-26 Score=274.42 Aligned_cols=295 Identities=19% Similarity=0.234 Sum_probs=204.2
Q ss_pred CCCCeeEEEeecCCCCcCCC-CC-CCCCceEEECCCCCcccc-cccccccCCccEEeccCCCCCCcCCC-CCCCCCccEE
Q 001326 431 LPDGLRYLHWHECPLKSLPS-NF-DLENLIELDLPYSKVEQL-WEGEKEAFKLKSIDLHQSHNLTRIPK-QSEAPNLERI 506 (1099)
Q Consensus 431 ~~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L 506 (1099)
.+.+++.|++++|.+..++. .+ .+++|++|+|++|.++.+ |..+..+++|++|+|++|.+....+. +..+++|++|
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 35689999999999999864 44 899999999999999987 66789999999999999986554444 6899999999
Q ss_pred EeeCCCCCCccCccccCCCCCCEEEcCCCCCcccCCCCC-CCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccC
Q 001326 507 NLWNCKNLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNI-HFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVP 585 (1099)
Q Consensus 507 ~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp 585 (1099)
+|++|......|..+.++++|++|++++|......+..+ .+++ |+.|++++|.+..+|
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---------------------L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS---------------------LEQLTLEKCNLTSIP 168 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT---------------------CCEEEEESCCCSSCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC---------------------CCEEECCCCcCcccC
Confidence 999999877778889999999999999985433333322 3333 344444445555555
Q ss_pred c-cccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCc-ccccCC
Q 001326 586 S-SIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPS-SIENLE 663 (1099)
Q Consensus 586 ~-~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~ 663 (1099)
. .+..+++|+.|++++|.+....+..+..+++|+.|++++|...+.++.......+|+.|++++|.++.+|. .+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 3 36677777777777777766666667777777777777777766666655555567777777776666663 455666
Q ss_pred CCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccC-CccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCC
Q 001326 664 GLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQL-PSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGC 742 (1099)
Q Consensus 664 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~ 742 (1099)
+|+.|++++|.+.+..+..+..+++|+.|++++|.+..+ |.. +..+++|+.|+|++|
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------------------~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA----------------------FRGLNYLRVLNVSGN 306 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT----------------------BTTCTTCCEEECCSS
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH----------------------hcCcccCCEEECCCC
Confidence 666666666665544444455555555555555555443 333 445555666666666
Q ss_pred CCcccccc-cCCCCCCCEEEccCCCCc
Q 001326 743 GIIEISQD-ICCLSSLESLNLAENNFE 768 (1099)
Q Consensus 743 ~l~~l~~~-~~~l~sL~~L~L~~n~l~ 768 (1099)
.+..++.. +..+++|+.|+|++|.+.
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cCceeCHhHcCCCcccCEEEccCCCcc
Confidence 66555443 456666667777666655
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.3e-26 Score=281.68 Aligned_cols=304 Identities=16% Similarity=0.103 Sum_probs=159.6
Q ss_pred CCCCceEEECCCCCcccccccc-cccCCccEEeccCCCCCCcCC-CCCCCCCccEEEeeCCCCCCccCccccCCCCCCEE
Q 001326 453 DLENLIELDLPYSKVEQLWEGE-KEAFKLKSIDLHQSHNLTRIP-KQSEAPNLERINLWNCKNLLYIPSHIQNFNNLSML 530 (1099)
Q Consensus 453 ~l~~L~~L~L~~n~i~~l~~~~-~~l~~L~~L~Ls~~~~l~~~~-~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 530 (1099)
.+.+++.|++++|.+..+|..+ ..+++|++|+|++|.+....| .+..+++|++|+|++|......|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4566666666666666666553 556667777777666544444 35666777777777666555555556677777777
Q ss_pred EcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCccccCCCCCcEEEeCCccccccccc
Q 001326 531 SLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVST 610 (1099)
Q Consensus 531 ~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~ 610 (1099)
+|++|. +..+|..+ ++.+++|++|+|++|.+.+..|.
T Consensus 129 ~L~~n~-l~~l~~~~------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~ 165 (597)
T 3oja_B 129 VLERND-LSSLPRGI------------------------------------------FHNTPKLTTLSMSNNNLERIEDD 165 (597)
T ss_dssp ECCSSC-CCCCCTTT------------------------------------------TTTCTTCCEEECCSSCCCBCCTT
T ss_pred EeeCCC-CCCCCHHH------------------------------------------hccCCCCCEEEeeCCcCCCCChh
Confidence 776652 22222211 23334444444444443333333
Q ss_pred ccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCc
Q 001326 611 GICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLV 690 (1099)
Q Consensus 611 ~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 690 (1099)
.++.+++|++|++++|..... .+..+++|+.|++++|.++.++ ..++|+.|++++|......+ .+ .++|+
T Consensus 166 ~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~~~-~~--~~~L~ 235 (597)
T 3oja_B 166 TFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRG-PV--NVELT 235 (597)
T ss_dssp TTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEEEC-SC--CSCCC
T ss_pred hhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccccc----CCchhheeeccCCccccccc-cc--CCCCC
Confidence 344444444444444433222 1233444445555544443321 23345555555544332211 11 23455
Q ss_pred eeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCc
Q 001326 691 VLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFE 768 (1099)
Q Consensus 691 ~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~ 768 (1099)
.|++++|.+... ..+..+++|+.|+|++|.+...++ +..+++|+.|+|++|.+..+|..+..+++|+.|+|++|.++
T Consensus 236 ~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 236 ILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp EEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC
Confidence 555555555542 445555555566665555544422 55566666666666666666555555666666666666666
Q ss_pred cccccccCCCCCCEEeecCCCCCCCCCCCCCCCCeeecccCc
Q 001326 769 SLPSSISQLSCLRRLCLRNCNMLQSLPELPLGLRHLEASNCK 810 (1099)
Q Consensus 769 ~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~i~~c~ 810 (1099)
.+|..+..+++|+.|+|++|+....-+..+++|+.|++++|+
T Consensus 315 ~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 315 HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence 666666666666666666655433222344556666665553
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=2e-25 Score=276.61 Aligned_cols=400 Identities=21% Similarity=0.194 Sum_probs=296.7
Q ss_pred EeccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCC-C-CCCCc
Q 001326 380 FLNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSN-F-DLENL 457 (1099)
Q Consensus 380 ~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~-~-~l~~L 457 (1099)
.||++.+....+++.+|.++++|++|++++|.++ .++.+.+....+|++|++++|.++.+|.. + ++++|
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~---------~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ---------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---------EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC---------CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence 5788888888899999999999999999999763 45556666678899999999999999975 4 89999
Q ss_pred eEEECCCCCccc--ccccccccCCccEEeccCCCCCCcCCC-CC---------------------------CCCCccEEE
Q 001326 458 IELDLPYSKVEQ--LWEGEKEAFKLKSIDLHQSHNLTRIPK-QS---------------------------EAPNLERIN 507 (1099)
Q Consensus 458 ~~L~L~~n~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~~~~-~~---------------------------~l~~L~~L~ 507 (1099)
++|+|++|.++. +|..+..+++|++|++++|.+....+. +. ....++.++
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~ 230 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 230 (635)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred CeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhh
Confidence 999999999985 467778999999999999976543322 11 112233444
Q ss_pred eeCCCCCCc-cCccccCCCCCC---------------------------------------------------------E
Q 001326 508 LWNCKNLLY-IPSHIQNFNNLS---------------------------------------------------------M 529 (1099)
Q Consensus 508 L~~~~~l~~-lp~~i~~l~~L~---------------------------------------------------------~ 529 (1099)
+.++..... .+..+..+..++ .
T Consensus 231 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 310 (635)
T 4g8a_A 231 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSS 310 (635)
T ss_dssp EESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSE
T ss_pred hhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccc
Confidence 444321110 111122222222 2
Q ss_pred EEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCccccCCCCCcEEEeCCccccc--c
Q 001326 530 LSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLK--R 607 (1099)
Q Consensus 530 L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~--~ 607 (1099)
+.+.++. ...++......+++.|++.++..-...+.....++.+.+..+.+...+. ...+++|+.|++++|.+.. .
T Consensus 311 l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 311 FSLVSVT-IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp EEEESCE-EEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC-CCBCTTCCEEECCSSCCBEEEE
T ss_pred ccccccc-cccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc-cccccccccchhhccccccccc
Confidence 2222211 1111111133455666666554333333445567777777776665443 4468999999999998754 3
Q ss_pred cccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccC--cccccCCCCcEEEccCCCCCCcccccccC
Q 001326 608 VSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELP--SSIENLEGLKELQLMCCSKLGSLPESLGN 685 (1099)
Q Consensus 608 l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~L~~~~~l~~lp~~l~~ 685 (1099)
.+..+..+.+|+.|++..+.... .+..+..+++|+.+++..+.....+ ..+..+++++.++++.|......+..+..
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~ 467 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 467 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred cccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc
Confidence 45566788999999998877544 4456788999999999998766443 35688999999999999999888899999
Q ss_pred CCCCceeecCCCCCcc--CCccccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCccccc-ccCCCCCCCEE
Q 001326 686 LKSLVVLDANRSAILQ--LPSSIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQ-DICCLSSLESL 760 (1099)
Q Consensus 686 l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~-~~~~l~sL~~L 760 (1099)
+++|+.|++++|.... .|..+..+++|++|+|++|.+..+++ +.++++|++|+|++|++..++. .+..+++|+.|
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence 9999999999997553 57889999999999999999988765 8899999999999999998765 58999999999
Q ss_pred EccCCCCccc-cccccCC-CCCCEEeecCCCCC
Q 001326 761 NLAENNFESL-PSSISQL-SCLRRLCLRNCNML 791 (1099)
Q Consensus 761 ~L~~n~l~~l-p~~l~~l-~~L~~L~L~~c~~l 791 (1099)
+|++|+++.+ |..+..+ ++|+.|+|++|+..
T Consensus 548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp ECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9999999966 4567777 68999999998643
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.8e-26 Score=281.00 Aligned_cols=302 Identities=15% Similarity=0.127 Sum_probs=156.7
Q ss_pred CCeeEEEeecCCCCcCCCCC--CCCCceEEECCCCCcccccc-cccccCCccEEeccCCCCCCcCCC-CCCCCCccEEEe
Q 001326 433 DGLRYLHWHECPLKSLPSNF--DLENLIELDLPYSKVEQLWE-GEKEAFKLKSIDLHQSHNLTRIPK-QSEAPNLERINL 508 (1099)
Q Consensus 433 ~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L~L 508 (1099)
.+++.|++++|.+..+|..+ .+++|++|+|++|.++.++. .+..+++|++|+|++|.+....|. ++.+++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 35667777777777777654 56777777777777776654 556777777777777765555444 467777777777
Q ss_pred eCCCCCCccCccccCCCCCCEEEcCCCCCcccCCCCC-CCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCcc
Q 001326 509 WNCKNLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNI-HFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSS 587 (1099)
Q Consensus 509 ~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~ 587 (1099)
++|......+..++++++|++|+|++|......|..+ .+++|+.|+++++ .+..++
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N---------------------~l~~~~-- 187 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN---------------------RLTHVD-- 187 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS---------------------CCSBCC--
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC---------------------CCCCcC--
Confidence 7776443333335777777777777764333222222 3333333333332 222221
Q ss_pred ccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcE
Q 001326 588 IESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKE 667 (1099)
Q Consensus 588 i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~ 667 (1099)
++.+++|+.|++++|.+.+ +...++|+.|++++|......+. ..++|+.|++++|.++.. .++..+++|+.
T Consensus 188 ~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~ 258 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT-AWLLNYPGLVE 258 (597)
T ss_dssp GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC-GGGGGCTTCSE
T ss_pred hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC-hhhccCCCCCE
Confidence 2334455555555554322 22233444444444443221111 123455555555555542 34555555555
Q ss_pred EEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCC-CCCCCCCCEEeccCCCCcc
Q 001326 668 LQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPP-LSTLSSLRTLTLSGCGIIE 746 (1099)
Q Consensus 668 L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~ 746 (1099)
|++++|.+.+..|..++.+++|+.|++++|.+..+|..+..+++|+.|+|++|.+..+|. +..+++|+.|+|++|.+..
T Consensus 259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred EECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCC
Confidence 555555555555555555555555555555555554444444455555555444444332 3334444444444444444
Q ss_pred cccccCCCCCCCEEEccCCCCc
Q 001326 747 ISQDICCLSSLESLNLAENNFE 768 (1099)
Q Consensus 747 l~~~~~~l~sL~~L~L~~n~l~ 768 (1099)
++ +..+++|+.|+|++|.+.
T Consensus 339 ~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 339 LK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CC--CCTTCCCSEEECCSSCEE
T ss_pred cC--hhhcCCCCEEEeeCCCCC
Confidence 32 334444444444444443
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=6.8e-26 Score=267.05 Aligned_cols=159 Identities=20% Similarity=0.155 Sum_probs=78.5
Q ss_pred hcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEE
Q 001326 636 LEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLREL 715 (1099)
Q Consensus 636 l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 715 (1099)
+..+++|+.|++++|.++.+| +..+++|+.|++++|...+. .++.+++|+.|++++|.+..+| +..+++|+.|
T Consensus 166 ~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L 238 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYF 238 (457)
T ss_dssp CTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEE
T ss_pred cccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEE
Confidence 334445555555555555444 44455555555555544332 2445555555555555555554 4455555555
Q ss_pred EccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCc-cccccccCCCCCCEEeecCCCCCCCC
Q 001326 716 CLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFE-SLPSSISQLSCLRRLCLRNCNMLQSL 794 (1099)
Q Consensus 716 ~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~l 794 (1099)
++++|.+..++ ...+++|+.|++++| +|+.|++++|.+. .+| +..+++|+.|++++|+.++.+
T Consensus 239 ~l~~N~l~~~~-~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 239 DCSVNPLTELD-VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp ECCSSCCSCCC-CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred EeeCCcCCCcC-HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence 55555554443 344555555555443 2334444444432 333 234455555555555555555
Q ss_pred CCCCCCCCeeecccCcCcccCCC
Q 001326 795 PELPLGLRHLEASNCKRLQSFPE 817 (1099)
Q Consensus 795 p~l~~sL~~L~i~~c~~L~~l~~ 817 (1099)
|...++|+.|++++|++|+.+..
T Consensus 303 ~~~~~~L~~L~l~~~~~L~~L~L 325 (457)
T 3bz5_A 303 DCQAAGITELDLSQNPKLVYLYL 325 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEEC
T ss_pred ccCCCcceEechhhcccCCEEEC
Confidence 54444555555555555554443
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=4.2e-25 Score=249.98 Aligned_cols=285 Identities=21% Similarity=0.229 Sum_probs=166.0
Q ss_pred CeeEEEeecCCCCcCCCCCCCCCceEEECCCCCcccccccccccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCC
Q 001326 434 GLRYLHWHECPLKSLPSNFDLENLIELDLPYSKVEQLWEGEKEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKN 513 (1099)
Q Consensus 434 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~ 513 (1099)
+++.++++++.+..+|..+ .++|++|+|++|+++.++.. .+..+++|++|+|++|..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~----------------------~~~~l~~L~~L~L~~n~l 88 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDG----------------------DFKNLKNLHTLILINNKI 88 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTT----------------------TTTTCTTCCEEECCSSCC
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChh----------------------hhccCCCCCEEECCCCcC
Confidence 3566666666666666543 24555555555555544331 244555555555555554
Q ss_pred CCccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCccccCCCC
Q 001326 514 LLYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPN 593 (1099)
Q Consensus 514 l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~ 593 (1099)
....|..++++++|++|++++|. +..+|.. +. ++
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~-------------------------------------------~~--~~ 122 (330)
T 1xku_A 89 SKISPGAFAPLVKLERLYLSKNQ-LKELPEK-------------------------------------------MP--KT 122 (330)
T ss_dssp CCBCTTTTTTCTTCCEEECCSSC-CSBCCSS-------------------------------------------CC--TT
T ss_pred CeeCHHHhcCCCCCCEEECCCCc-CCccChh-------------------------------------------hc--cc
Confidence 44446666677777777776652 2222221 11 33
Q ss_pred CcEEEeCCcccccccccccccCccccEEeccCCCCCC--ccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEcc
Q 001326 594 LKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLE--SFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLM 671 (1099)
Q Consensus 594 L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~ 671 (1099)
|++|++++|.+....+..+.++++|+.|++++|.... ..+..+..+++|+.|++++|.++.+|..+. ++|+.|+++
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~ 200 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLD 200 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECT
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECC
Confidence 4444444444333333334444445555554444422 344556666666666666666666665543 667777777
Q ss_pred CCCCCCcccccccCCCCCceeecCCCCCccCCc-cccCCCCCcEEEccCCCCCCCCC-CCCCCCCCEEeccCCCCccccc
Q 001326 672 CCSKLGSLPESLGNLKSLVVLDANRSAILQLPS-SIADLNKLRELCLSGCRGFALPP-LSTLSSLRTLTLSGCGIIEISQ 749 (1099)
Q Consensus 672 ~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~l~~ 749 (1099)
+|...+..|..+..+++|+.|++++|.+..++. .+..+++|++|++++|.+..+|. +..+++|++|++++|.++.++.
T Consensus 201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp TSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccCh
Confidence 776666666667777777777777777765543 56667777777777777666654 6667777777777777776554
Q ss_pred c-cC------CCCCCCEEEccCCCCc---cccccccCCCCCCEEeecCCC
Q 001326 750 D-IC------CLSSLESLNLAENNFE---SLPSSISQLSCLRRLCLRNCN 789 (1099)
Q Consensus 750 ~-~~------~l~sL~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~c~ 789 (1099)
. +. ..++|+.|++++|.+. ..|..+..+++|+.++|++|+
T Consensus 281 ~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3 22 2467788888888775 234567777888888887763
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=2.2e-25 Score=252.41 Aligned_cols=284 Identities=19% Similarity=0.207 Sum_probs=169.3
Q ss_pred CceEEECCCCCcccccccccccCCccEEeccCCCCCCcCC-CCCCCCCccEEEeeCCCCCCccCccccCCCCCCEEEcCC
Q 001326 456 NLIELDLPYSKVEQLWEGEKEAFKLKSIDLHQSHNLTRIP-KQSEAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSLRD 534 (1099)
Q Consensus 456 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~~-~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~ 534 (1099)
+|+.++++++.++.+|..+. ++|++|++++|.+....| .+..+++|++|++++|......|..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 45566666666666655442 466666666665444433 356777777777777765555577778888888888877
Q ss_pred CCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCcc-ccCCCCCcEEEeCCcccccccccccc
Q 001326 535 CISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSS-IESLPNLKILNLGFCKRLKRVSTGIC 613 (1099)
Q Consensus 535 ~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~l~~~l~ 613 (1099)
|. +..+|..+. .+|+.|++++|.+..+|.. +..+++|+.|++++|.+..
T Consensus 112 n~-l~~l~~~~~----------------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~------- 161 (332)
T 2ft3_A 112 NH-LVEIPPNLP----------------------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN------- 161 (332)
T ss_dssp SC-CCSCCSSCC----------------------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG-------
T ss_pred Cc-CCccCcccc----------------------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc-------
Confidence 62 223332111 2333333334444444432 4455555555555554421
Q ss_pred cCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceee
Q 001326 614 KLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLD 693 (1099)
Q Consensus 614 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 693 (1099)
.+..+..+..+ +|+.|++++|.++.+|..+. ++|+.|++++|...+..+..+..+++|+.|+
T Consensus 162 ---------------~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 223 (332)
T 2ft3_A 162 ---------------SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223 (332)
T ss_dssp ---------------GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCB
T ss_pred ---------------CCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 11333444444 66666666666666665443 5677777777766666666667777777777
Q ss_pred cCCCCCccCCc-cccCCCCCcEEEccCCCCCCCCC-CCCCCCCCEEeccCCCCcccccc-cCC------CCCCCEEEccC
Q 001326 694 ANRSAILQLPS-SIADLNKLRELCLSGCRGFALPP-LSTLSSLRTLTLSGCGIIEISQD-ICC------LSSLESLNLAE 764 (1099)
Q Consensus 694 l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~l~~~-~~~------l~sL~~L~L~~ 764 (1099)
+++|.+..++. .+..+++|+.|++++|.+..+|. +..+++|+.|++++|.++.++.. +.. .++|+.|++++
T Consensus 224 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp CCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred CCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence 77777766543 56667777777777777666655 56667777777777777765543 222 46678888888
Q ss_pred CCCc---cccccccCCCCCCEEeecCCC
Q 001326 765 NNFE---SLPSSISQLSCLRRLCLRNCN 789 (1099)
Q Consensus 765 n~l~---~lp~~l~~l~~L~~L~L~~c~ 789 (1099)
|.+. ..|..+..+++|+.|++++|+
T Consensus 304 N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 304 NPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CcccccccCcccccccchhhhhhccccc
Confidence 8765 334567778888888887765
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=9.1e-24 Score=238.94 Aligned_cols=287 Identities=17% Similarity=0.212 Sum_probs=192.6
Q ss_pred CCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCC-C-CCCCceEEECCCCCcccc-cccc
Q 001326 398 KMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSN-F-DLENLIELDLPYSKVEQL-WEGE 474 (1099)
Q Consensus 398 ~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~l-~~~~ 474 (1099)
...+|+.++++++.++.+ |.. .++.|++|++++|.+..++.. + .+++|++|+|++|.++.+ |..+
T Consensus 29 c~c~l~~l~~~~~~l~~l---------p~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKV---------PKD---LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96 (330)
T ss_dssp CEEETTEEECTTSCCCSC---------CCS---CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred CcCCCeEEEecCCCcccc---------Ccc---CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh
Confidence 344899999988766433 322 346799999999999999874 4 899999999999999987 6778
Q ss_pred cccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCCCCccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEE
Q 001326 475 KEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKID 554 (1099)
Q Consensus 475 ~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~ 554 (1099)
..+++|++|++++|.+. .+|... .++|++|++++|......+..+.++++|++|++++|....
T Consensus 97 ~~l~~L~~L~Ls~n~l~-~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------- 159 (330)
T 1xku_A 97 APLVKLERLYLSKNQLK-ELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--------------- 159 (330)
T ss_dssp TTCTTCCEEECCSSCCS-BCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG---------------
T ss_pred cCCCCCCEEECCCCcCC-ccChhh-cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc---------------
Confidence 89999999999998744 444321 2677788887776555445556777777777776652110
Q ss_pred ccCCcCCCCCCCCCCCccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccch
Q 001326 555 FSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPE 634 (1099)
Q Consensus 555 l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~ 634 (1099)
....+..+..+++|+.|++++|.+.. +|..+
T Consensus 160 --------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~---------------------- 190 (330)
T 1xku_A 160 --------------------------SGIENGAFQGMKKLSYIRIADTNITT-IPQGL---------------------- 190 (330)
T ss_dssp --------------------------GGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC----------------------
T ss_pred --------------------------cCcChhhccCCCCcCEEECCCCcccc-CCccc----------------------
Confidence 01123345556666666666665432 22221
Q ss_pred hhcCCCCCCEEEccCCCCccc-CcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCc
Q 001326 635 ILEKMEPLEKLALDRSGIKEL-PSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLR 713 (1099)
Q Consensus 635 ~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 713 (1099)
.++|+.|++++|.++.+ |..+..+++|+.|++++|...+..+..+..+++|+.|++++|.+..+|..+..+++|+
T Consensus 191 ----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~ 266 (330)
T 1xku_A 191 ----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 266 (330)
T ss_dssp ----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCC
T ss_pred ----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcC
Confidence 14556666666665544 3455666666666666666555555566666777777777777777777777777777
Q ss_pred EEEccCCCCCCCCC--C------CCCCCCCEEeccCCCCcc---cccccCCCCCCCEEEccCCC
Q 001326 714 ELCLSGCRGFALPP--L------STLSSLRTLTLSGCGIIE---ISQDICCLSSLESLNLAENN 766 (1099)
Q Consensus 714 ~L~L~~~~~~~l~~--l------~~l~~L~~L~Ls~~~l~~---l~~~~~~l~sL~~L~L~~n~ 766 (1099)
+|++++|.+..++. + ...++|+.|++++|.+.. .|..+..+++|+.++|++|+
T Consensus 267 ~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred EEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 77777777666554 2 134788899999998873 34568889999999999884
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=2e-24 Score=241.92 Aligned_cols=247 Identities=23% Similarity=0.316 Sum_probs=223.4
Q ss_pred CCccEEEecCcCCc---ccCccccCCCCCcEEEeCC-cccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCE
Q 001326 569 GNVVELKLFNTPIE---EVPSSIESLPNLKILNLGF-CKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEK 644 (1099)
Q Consensus 569 ~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~-~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 644 (1099)
++++.|+++++.+. .+|..+..+++|++|++++ |.+.+.+|..++++++|++|++++|...+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 56888889888888 5899999999999999995 8888899999999999999999999998899999999999999
Q ss_pred EEccCCCCc-ccCcccccCCCCcEEEccCCCCCCcccccccCCC-CCceeecCCCCCc-cCCccccCCCCCcEEEccCCC
Q 001326 645 LALDRSGIK-ELPSSIENLEGLKELQLMCCSKLGSLPESLGNLK-SLVVLDANRSAIL-QLPSSIADLNKLRELCLSGCR 721 (1099)
Q Consensus 645 L~L~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~-~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~ 721 (1099)
|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.+. .+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999998 7899999999999999999999889999999998 9999999999998 6788898887 9999999999
Q ss_pred CCCCCC--CCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCc-cccccccCCCCCCEEeecCCCCCCCCCCC-
Q 001326 722 GFALPP--LSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFE-SLPSSISQLSCLRRLCLRNCNMLQSLPEL- 797 (1099)
Q Consensus 722 ~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l- 797 (1099)
+...++ +..+++|+.|++++|.+...+..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|+....+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 765443 88999999999999999976666889999999999999999 88999999999999999999887788864
Q ss_pred -CCCCCeeecccCcCcccCC
Q 001326 798 -PLGLRHLEASNCKRLQSFP 816 (1099)
Q Consensus 798 -~~sL~~L~i~~c~~L~~l~ 816 (1099)
+++|+.|++.+++.+...|
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTT
T ss_pred cccccChHHhcCCCCccCCC
Confidence 4678888888888776554
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.2e-24 Score=243.64 Aligned_cols=250 Identities=19% Similarity=0.238 Sum_probs=188.6
Q ss_pred CCccEEEeeCCCCCC--ccCccccCCCCCCEEEcCC-CCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEec
Q 001326 501 PNLERINLWNCKNLL--YIPSHIQNFNNLSMLSLRD-CISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLF 577 (1099)
Q Consensus 501 ~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~L~~-~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~ 577 (1099)
.+++.|+|++|.... .+|..++++++|++|++++ |...
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~--------------------------------------- 90 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV--------------------------------------- 90 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE---------------------------------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc---------------------------------------
Confidence 456667777766655 6777777777777777774 3211
Q ss_pred CcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCc-ccC
Q 001326 578 NTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIK-ELP 656 (1099)
Q Consensus 578 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp 656 (1099)
..+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|...+.+|..+..+++|++|++++|.++ .+|
T Consensus 91 ----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 91 ----GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp ----SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred ----ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence 134455666677777777777766667777777777777777777776677777777777777777777777 677
Q ss_pred cccccCC-CCcEEEccCCCCCCcccccccCCCCCceeecCCCCCc-cCCccccCCCCCcEEEccCCCCCC-CCCCCCCCC
Q 001326 657 SSIENLE-GLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAIL-QLPSSIADLNKLRELCLSGCRGFA-LPPLSTLSS 733 (1099)
Q Consensus 657 ~~l~~l~-~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~-l~~l~~l~~ 733 (1099)
..+..++ +|+.|++++|...+.+|..+..++ |+.|++++|.+. ..|..+..+++|+.|++++|.+.. .+.+..+++
T Consensus 167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 245 (313)
T 1ogq_A 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTT
T ss_pred HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCC
Confidence 7777776 788888888877777777777776 888888888777 346677788888888888887653 344778899
Q ss_pred CCEEeccCCCCc-ccccccCCCCCCCEEEccCCCCc-cccccccCCCCCCEEeecCCCCCCCCC
Q 001326 734 LRTLTLSGCGII-EISQDICCLSSLESLNLAENNFE-SLPSSISQLSCLRRLCLRNCNMLQSLP 795 (1099)
Q Consensus 734 L~~L~Ls~~~l~-~l~~~~~~l~sL~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp 795 (1099)
|++|++++|.+. .+|..+..+++|+.|+|++|+++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 246 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 999999999998 68888999999999999999998 67765 889999999999998766544
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=3.9e-23 Score=233.93 Aligned_cols=283 Identities=13% Similarity=0.136 Sum_probs=177.0
Q ss_pred CCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCC-CC-CCCCceEEECCCCCcccc-ccccccc
Q 001326 401 NLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPS-NF-DLENLIELDLPYSKVEQL-WEGEKEA 477 (1099)
Q Consensus 401 ~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l-~~~~~~l 477 (1099)
+|+.++++++.++.+ |..+ +++|++|++++|.+..++. .+ .+++|++|+|++|.++.+ |..+..+
T Consensus 34 ~l~~l~~~~~~l~~i---------p~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV---------PKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101 (332)
T ss_dssp ETTEEECCSSCCSSC---------CSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred cCCEEECCCCCcccc---------CCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence 577777777655332 2222 3567888888888777754 33 677888888888887776 5566777
Q ss_pred CCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCCCCccCccccCCCCCCEEEcCCCCCcc--cCCCCCCCCCCcEEEc
Q 001326 478 FKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSLRDCISLS--CFPRNIHFRSPVKIDF 555 (1099)
Q Consensus 478 ~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~--~lp~~~~l~~L~~L~l 555 (1099)
++|++|++++|.+. .+|.... ++|++|++++|......+..+.++++|++|++++|.... ..|..+...
T Consensus 102 ~~L~~L~L~~n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l------- 172 (332)
T 2ft3_A 102 RKLQKLYISKNHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL------- 172 (332)
T ss_dssp TTCCEEECCSSCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-------
T ss_pred CCCCEEECCCCcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-------
Confidence 88888888877644 3443222 677888887776554444557777778887777764321 222211111
Q ss_pred cCCcCCCCCCCCCCCccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchh
Q 001326 556 SGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEI 635 (1099)
Q Consensus 556 ~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~ 635 (1099)
+++.|++++|.+..+|..+. ++|+.|++++|.+....+..+..+++|+.|++++|......+..
T Consensus 173 --------------~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 173 --------------KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp --------------CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred --------------ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 34555555566666666543 67777777777777666667777777777777777766666666
Q ss_pred hcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccC------CCCCceeecCCCCCc--cC-Cccc
Q 001326 636 LEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGN------LKSLVVLDANRSAIL--QL-PSSI 706 (1099)
Q Consensus 636 l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~------l~~L~~L~l~~~~i~--~l-p~~~ 706 (1099)
+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+....+..+.. ..+|+.|++++|.+. .+ |..+
T Consensus 237 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred hhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccc
Confidence 77777777777777777777777777777777777777665544443432 234555555555544 22 3334
Q ss_pred cCCCCCcEEEccCC
Q 001326 707 ADLNKLRELCLSGC 720 (1099)
Q Consensus 707 ~~l~~L~~L~L~~~ 720 (1099)
..+++|+.|++++|
T Consensus 317 ~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 317 RCVTDRLAIQFGNY 330 (332)
T ss_dssp TTBCCSTTEEC---
T ss_pred cccchhhhhhcccc
Confidence 44444444444444
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=2e-26 Score=273.79 Aligned_cols=358 Identities=17% Similarity=0.129 Sum_probs=236.5
Q ss_pred CCeeEEEeecCCCCcCCCC--C-CCCCceEEECCCCCcc-----cccccccccCCccEEeccCCCCCCcCC-CC-CCCC-
Q 001326 433 DGLRYLHWHECPLKSLPSN--F-DLENLIELDLPYSKVE-----QLWEGEKEAFKLKSIDLHQSHNLTRIP-KQ-SEAP- 501 (1099)
Q Consensus 433 ~~Lr~L~l~~~~l~~lp~~--~-~l~~L~~L~L~~n~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~~-~~-~~l~- 501 (1099)
++|++|+++++.+...+.. + .+++|++|+|++|.+. .++..+..+++|++|++++|.+....+ .+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4566666666666544321 2 4666777777777665 345555666777777777765432211 11 1222
Q ss_pred ---CccEEEeeCCCCCC----ccCccccCCCCCCEEEcCCCCCcccCCCCC------CCCCCcEEEccCCcCCCCCCCCC
Q 001326 502 ---NLERINLWNCKNLL----YIPSHIQNFNNLSMLSLRDCISLSCFPRNI------HFRSPVKIDFSGCVNLTEFPHIS 568 (1099)
Q Consensus 502 ---~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~------~l~~L~~L~l~~~~~l~~l~~~~ 568 (1099)
+|++|+|++|.... .++..+..+++|++|++++|......+..+ ...+|++|++++
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~----------- 151 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY----------- 151 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT-----------
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCC-----------
Confidence 57777777776542 456677777788888887764322111111 122344444444
Q ss_pred CCccEEEecCcCCc-----ccCccccCCCCCcEEEeCCcccccccccccc-----cCccccEEeccCCCCCCc----cch
Q 001326 569 GNVVELKLFNTPIE-----EVPSSIESLPNLKILNLGFCKRLKRVSTGIC-----KLKYLRCLYLLDCSDLES----FPE 634 (1099)
Q Consensus 569 ~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~-----~l~~L~~L~L~~~~~~~~----~~~ 634 (1099)
|.+. .++..+..+++|++|++++|.+....+..+. ..++|++|++++|..... ++.
T Consensus 152 ----------n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 152 ----------CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp ----------SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 4443 3455566778889999988886654444333 256889999988877653 567
Q ss_pred hhcCCCCCCEEEccCCCCccc------CcccccCCCCcEEEccCCCCCCc----ccccccCCCCCceeecCCCCCccC--
Q 001326 635 ILEKMEPLEKLALDRSGIKEL------PSSIENLEGLKELQLMCCSKLGS----LPESLGNLKSLVVLDANRSAILQL-- 702 (1099)
Q Consensus 635 ~l~~l~~L~~L~L~~~~l~~l------p~~l~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~l~~~~i~~l-- 702 (1099)
.+..+++|++|++++|.++.. +.....+++|++|++++|..... ++..+..+++|++|++++|.+...
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 778888999999999887642 22233578899999999876653 667777888999999999987632
Q ss_pred ---Cccc-cCCCCCcEEEccCCCCCCCC------CCCCCCCCCEEeccCCCCccc-c----cccCC-CCCCCEEEccCCC
Q 001326 703 ---PSSI-ADLNKLRELCLSGCRGFALP------PLSTLSSLRTLTLSGCGIIEI-S----QDICC-LSSLESLNLAENN 766 (1099)
Q Consensus 703 ---p~~~-~~l~~L~~L~L~~~~~~~l~------~l~~l~~L~~L~Ls~~~l~~l-~----~~~~~-l~sL~~L~L~~n~ 766 (1099)
...+ ...++|++|++++|.+.... .+..+++|++|++++|.+... + ..+.. .++|++|++++|.
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 2222 23468999999999865432 145678999999999988752 2 22332 6799999999999
Q ss_pred Cc-----cccccccCCCCCCEEeecCCCCCCC--------CCCCCCCCCeeecccCcC
Q 001326 767 FE-----SLPSSISQLSCLRRLCLRNCNMLQS--------LPELPLGLRHLEASNCKR 811 (1099)
Q Consensus 767 l~-----~lp~~l~~l~~L~~L~L~~c~~l~~--------lp~l~~sL~~L~i~~c~~ 811 (1099)
++ .+|..+..+++|++|++++|+.-.. +|...+.|+.|.+.++..
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 98 6788888899999999999865432 444456788888877643
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=3.9e-22 Score=241.73 Aligned_cols=98 Identities=30% Similarity=0.348 Sum_probs=51.9
Q ss_pred CCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCC
Q 001326 687 KSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENN 766 (1099)
Q Consensus 687 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~ 766 (1099)
++|+.|++++|.+..+|.. +++|+.|++++|.+..+| ..+++|+.|+|++|.+..+|. .+++|+.|+|++|+
T Consensus 201 ~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 201 SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp TTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred chhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCC
Confidence 3444444444444444432 244555555555554444 344555555555555555554 34556666666666
Q ss_pred CccccccccCCCCCCEEeecCCCCCC
Q 001326 767 FESLPSSISQLSCLRRLCLRNCNMLQ 792 (1099)
Q Consensus 767 l~~lp~~l~~l~~L~~L~L~~c~~l~ 792 (1099)
++.+|..+..+++|+.|+|++|+...
T Consensus 273 L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 273 LTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCcCCHHHhhccccCEEEecCCCCCC
Confidence 66666556666666666666655443
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=3.9e-23 Score=232.86 Aligned_cols=210 Identities=30% Similarity=0.451 Sum_probs=143.4
Q ss_pred CCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEcc
Q 001326 592 PNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLM 671 (1099)
Q Consensus 592 ~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~ 671 (1099)
++++.|++++|.+. .+|..+.++++|++|++++|... .+|..+..+++|++|++++|.++.+|..+.++++|+.|+++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 44555555555443 44444555555555555555544 55555666666666666666666666667777777777777
Q ss_pred CCCCCCcccccccC---------CCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCC-CCCCCCCCEEeccC
Q 001326 672 CCSKLGSLPESLGN---------LKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPP-LSTLSSLRTLTLSG 741 (1099)
Q Consensus 672 ~~~~l~~lp~~l~~---------l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~Ls~ 741 (1099)
+|...+.+|..+.. +++|++|++++|.+..+|..+..+++|++|+|++|.+..+|+ +..+++|++|++++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 77666666665543 777777777777777777777777777777777777776654 66777788888887
Q ss_pred CCCc-ccccccCCCCCCCEEEccCCCCc-cccccccCCCCCCEEeecCCCCCCCCCCCCCCCCe
Q 001326 742 CGII-EISQDICCLSSLESLNLAENNFE-SLPSSISQLSCLRRLCLRNCNMLQSLPELPLGLRH 803 (1099)
Q Consensus 742 ~~l~-~l~~~~~~l~sL~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~ 803 (1099)
|.+. .+|..+..+++|+.|+|++|++. .+|..+..+++|+.|+|++|+.++.+|+.+.+|..
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 7766 46667777888888888887654 67777778888888888888888888765544333
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=9.8e-23 Score=229.61 Aligned_cols=231 Identities=26% Similarity=0.367 Sum_probs=131.7
Q ss_pred CeeEEEeecCCCCcCCCCC-CCCCceEEECCCCCcccccccccccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCC
Q 001326 434 GLRYLHWHECPLKSLPSNF-DLENLIELDLPYSKVEQLWEGEKEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCK 512 (1099)
Q Consensus 434 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~ 512 (1099)
+++.|++++|.+..+|..+ .+++|++|+|++|.++.+|..+..+++|++|+|++|.+.
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--------------------- 140 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--------------------- 140 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC---------------------
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc---------------------
Confidence 3555555555555555544 455555555555555555555555555555555555433
Q ss_pred CCCccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCccccCCC
Q 001326 513 NLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLP 592 (1099)
Q Consensus 513 ~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~ 592 (1099)
.+|..++++++|++|++++|...+.+|..+.- ..+.+ ......+|+.|++++|.+..+|..++.++
T Consensus 141 ---~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~-----~~~~~------~~~~l~~L~~L~L~~n~l~~lp~~l~~l~ 206 (328)
T 4fcg_A 141 ---ALPASIASLNRLRELSIRACPELTELPEPLAS-----TDASG------EHQGLVNLQSLRLEWTGIRSLPASIANLQ 206 (328)
T ss_dssp ---CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE-----EC-CC------CEEESTTCCEEEEEEECCCCCCGGGGGCT
T ss_pred ---cCcHHHhcCcCCCEEECCCCCCccccChhHhh-----ccchh------hhccCCCCCEEECcCCCcCcchHhhcCCC
Confidence 33444444444444444444444444332200 00000 00011233444444455666666677777
Q ss_pred CCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCC-cccCcccccCCCCcEEEcc
Q 001326 593 NLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGI-KELPSSIENLEGLKELQLM 671 (1099)
Q Consensus 593 ~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l-~~lp~~l~~l~~L~~L~L~ 671 (1099)
+|++|++++|.+.+ +|..+..+++|++|++++|...+.+|..+..+++|+.|++++|.+ ..+|..+.++++|+.|+++
T Consensus 207 ~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 207 NLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp TCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred CCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 77777777776553 455566777777777777777776776677777777777776544 3566667777777777777
Q ss_pred CCCCCCcccccccCCCCCceeecCCCCCc
Q 001326 672 CCSKLGSLPESLGNLKSLVVLDANRSAIL 700 (1099)
Q Consensus 672 ~~~~l~~lp~~l~~l~~L~~L~l~~~~i~ 700 (1099)
+|..++.+|..++++++|+.+++..+.+.
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 77777777777777777776666655444
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=1.1e-21 Score=237.94 Aligned_cols=124 Identities=24% Similarity=0.276 Sum_probs=86.6
Q ss_pred CCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccC
Q 001326 640 EPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSG 719 (1099)
Q Consensus 640 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~ 719 (1099)
++|+.|++++|.++.+|.. +++|+.|++++|.+. .+|. .+++|+.|++++|.++.+| ..+++|+.|+|++
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSG 250 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCS
T ss_pred CCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCC
Confidence 4444445555555444432 245555555555433 2332 2356777777777777776 4567888888888
Q ss_pred CCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCc-ccccccc
Q 001326 720 CRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFE-SLPSSIS 775 (1099)
Q Consensus 720 ~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~-~lp~~l~ 775 (1099)
|.+..+|. .+++|+.|+|++|.+..+|..+..+++|+.|+|++|.++ ..|..+.
T Consensus 251 N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 251 NRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 88887777 678999999999999999999999999999999999988 3444443
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=8.3e-25 Score=259.87 Aligned_cols=342 Identities=19% Similarity=0.143 Sum_probs=190.6
Q ss_pred CeeEEEeecCCCC-----cCCCCC-CCCCceEEECCCCCcccc-cccc-cccC----CccEEeccCCCCCC----cCCC-
Q 001326 434 GLRYLHWHECPLK-----SLPSNF-DLENLIELDLPYSKVEQL-WEGE-KEAF----KLKSIDLHQSHNLT----RIPK- 496 (1099)
Q Consensus 434 ~Lr~L~l~~~~l~-----~lp~~~-~l~~L~~L~L~~n~i~~l-~~~~-~~l~----~L~~L~Ls~~~~l~----~~~~- 496 (1099)
+|++|++++|.+. .++..+ .+++|++|+|++|.+... +..+ ..+. +|++|++++|.+.. .++.
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 4555555555554 223333 455666666666655431 1111 2222 46666666665332 1122
Q ss_pred CCCCCCccEEEeeCCCCCCccCccc-----cCCCCCCEEEcCCCCCccc----CCCCC-CCCCCcEEEccCCcCCCCCCC
Q 001326 497 QSEAPNLERINLWNCKNLLYIPSHI-----QNFNNLSMLSLRDCISLSC----FPRNI-HFRSPVKIDFSGCVNLTEFPH 566 (1099)
Q Consensus 497 ~~~l~~L~~L~L~~~~~l~~lp~~i-----~~l~~L~~L~L~~~~~l~~----lp~~~-~l~~L~~L~l~~~~~l~~l~~ 566 (1099)
+..+++|++|++++|......+..+ ...++|++|++++|..... ++..+ .+++|+.|+++++. ++..
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~-- 185 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEA-- 185 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHH--
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchH--
Confidence 4556666666666655332222221 1244566666666633221 11111 23444444444432 1100
Q ss_pred CCCCccEEEecCcCCcccCcccc-CCCCCcEEEeCCcccccc----cccccccCccccEEeccCCCCCCcc-----chhh
Q 001326 567 ISGNVVELKLFNTPIEEVPSSIE-SLPNLKILNLGFCKRLKR----VSTGICKLKYLRCLYLLDCSDLESF-----PEIL 636 (1099)
Q Consensus 567 ~~~~L~~L~l~~~~i~~lp~~i~-~l~~L~~L~L~~~~~~~~----l~~~l~~l~~L~~L~L~~~~~~~~~-----~~~l 636 (1099)
....+...+. ..++|+.|++++|.+... ++..+..+++|++|++++|...... +..+
T Consensus 186 -------------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 252 (461)
T 1z7x_W 186 -------------GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252 (461)
T ss_dssp -------------HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred -------------HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence 0001111111 244667777777665542 4555666677777777776543321 2222
Q ss_pred cCCCCCCEEEccCCCCcc-----cCcccccCCCCcEEEccCCCCCCccccccc-----CCCCCceeecCCCCCcc-----
Q 001326 637 EKMEPLEKLALDRSGIKE-----LPSSIENLEGLKELQLMCCSKLGSLPESLG-----NLKSLVVLDANRSAILQ----- 701 (1099)
Q Consensus 637 ~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~-----~l~~L~~L~l~~~~i~~----- 701 (1099)
..+++|++|++++|.++. ++..+..+++|++|++++|......+..+. ..++|+.|++++|.++.
T Consensus 253 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 332 (461)
T 1z7x_W 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH 332 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH
Confidence 356777777777777775 566677777888888887765443222222 23578888888887764
Q ss_pred CCccccCCCCCcEEEccCCCCCCCCC------CC-CCCCCCEEeccCCCCc-----ccccccCCCCCCCEEEccCCCCcc
Q 001326 702 LPSSIADLNKLRELCLSGCRGFALPP------LS-TLSSLRTLTLSGCGII-----EISQDICCLSSLESLNLAENNFES 769 (1099)
Q Consensus 702 lp~~~~~l~~L~~L~L~~~~~~~l~~------l~-~l~~L~~L~Ls~~~l~-----~l~~~~~~l~sL~~L~L~~n~l~~ 769 (1099)
++..+..+++|++|++++|.+..... +. ..++|++|++++|.++ .++..+..+++|++|++++|+++.
T Consensus 333 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 333 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 35566777888888888887543211 11 2678999999999888 477778888999999999998873
Q ss_pred c-----cccc-cCCCCCCEEeecCCCCC
Q 001326 770 L-----PSSI-SQLSCLRRLCLRNCNML 791 (1099)
Q Consensus 770 l-----p~~l-~~l~~L~~L~L~~c~~l 791 (1099)
. ...+ ...++|+.|.+.++..-
T Consensus 413 ~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 413 AGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HHHHHHHHHhccCCcchhheeecccccC
Confidence 2 1222 23457888888776543
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=2.9e-22 Score=228.83 Aligned_cols=270 Identities=19% Similarity=0.209 Sum_probs=149.5
Q ss_pred eEEEeecCCCCcCCCCCCCCCceEEECCCCCcccccc-cccccCCccEEeccCCCCCCcCCC-CCCCCCccEEEeeCCCC
Q 001326 436 RYLHWHECPLKSLPSNFDLENLIELDLPYSKVEQLWE-GEKEAFKLKSIDLHQSHNLTRIPK-QSEAPNLERINLWNCKN 513 (1099)
Q Consensus 436 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L~L~~~~~ 513 (1099)
...+.+++.++.+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.+....+. +..+++|++|++++|..
T Consensus 34 ~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp SEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 346667777777776543 467777777777776655 456666666666666654444333 45556666666665543
Q ss_pred CCccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCc--cccCC
Q 001326 514 LLYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPS--SIESL 591 (1099)
Q Consensus 514 l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~--~i~~l 591 (1099)
....+..++++++|++|++++| .+..+|. .+..+
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n--------------------------------------------~l~~l~~~~~~~~l 148 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGN--------------------------------------------PYKTLGETSLFSHL 148 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTC--------------------------------------------CCSSSCSSCSCTTC
T ss_pred CcCCHhHhCCCccCCEEECCCC--------------------------------------------CCcccCchhhhccC
Confidence 3222222555555555555543 2223332 34556
Q ss_pred CCCcEEEeCCccccc-ccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCccc-ccCCCCcEEE
Q 001326 592 PNLKILNLGFCKRLK-RVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSI-ENLEGLKELQ 669 (1099)
Q Consensus 592 ~~L~~L~L~~~~~~~-~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L~ 669 (1099)
++|++|++++|.... ..+..+.++++|++|++++|......|..+..+++|++|++++|.++.+|..+ ..+++|+.|+
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEE
T ss_pred CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEE
Confidence 666666666653222 22334455555555555555444444444444444444444444444333322 1233333333
Q ss_pred ccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCc----
Q 001326 670 LMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGII---- 745 (1099)
Q Consensus 670 L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~---- 745 (1099)
+++|. +..++.. .++.....+.++.++++++.+.
T Consensus 229 L~~n~------------------------l~~~~~~------------------~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 229 LRDTD------------------------LDTFHFS------------------ELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp EESCB------------------------CTTCCCC------------------------CCCCCCEEEEESCBCCHHHH
T ss_pred CCCCc------------------------ccccccc------------------ccccccccchhhccccccccccCcch
Confidence 33333 2222100 0011223445666666666555
Q ss_pred -ccccccCCCCCCCEEEccCCCCccccccc-cCCCCCCEEeecCCCCCC
Q 001326 746 -EISQDICCLSSLESLNLAENNFESLPSSI-SQLSCLRRLCLRNCNMLQ 792 (1099)
Q Consensus 746 -~l~~~~~~l~sL~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~c~~l~ 792 (1099)
.+|..+..+++|+.|++++|+++.+|..+ ..+++|+.|++++|+...
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 47777888999999999999999888774 788999999999986443
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=7.7e-22 Score=225.30 Aligned_cols=203 Identities=12% Similarity=0.114 Sum_probs=162.1
Q ss_pred CCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCC-CC-CCCCceEEECCCCCccccc-cccc
Q 001326 399 MPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPS-NF-DLENLIELDLPYSKVEQLW-EGEK 475 (1099)
Q Consensus 399 l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~-~~~~ 475 (1099)
++.....+.+++.++.+ |.+ .+++|++|++++|.++.+|. .+ .+++|++|+|++|.++.++ ..+.
T Consensus 30 C~~~~~c~~~~~~l~~i---------P~~---~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSI---------PSG---LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97 (353)
T ss_dssp ECTTSEEECCSTTCSSC---------CTT---CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCCCeEeeCCCCCcccc---------ccc---ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC
Confidence 44555677777765433 332 23579999999999999997 34 8999999999999999885 4588
Q ss_pred ccCCccEEeccCCCCCCcCCC-CCCCCCccEEEeeCCCCCCccCc--cccCCCCCCEEEcCCCCCcccCCCCCCCCCCcE
Q 001326 476 EAFKLKSIDLHQSHNLTRIPK-QSEAPNLERINLWNCKNLLYIPS--HIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVK 552 (1099)
Q Consensus 476 ~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~ 552 (1099)
.+++|++|++++|.+....+. +..+++|++|++++|... .+|. .+.++++|++|++++|..+..++
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~---------- 166 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQ---------- 166 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEEC----------
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccC----------
Confidence 999999999999986654444 789999999999998754 5555 78889999999988763222221
Q ss_pred EEccCCcCCCCCCCCCCCccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCcc
Q 001326 553 IDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESF 632 (1099)
Q Consensus 553 L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~ 632 (1099)
+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|......
T Consensus 167 --------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 167 --------------------------------RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp --------------------------------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred --------------------------------HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence 234778899999999999999888999999999999999999875444
Q ss_pred chhhcCCCCCCEEEccCCCCcccC
Q 001326 633 PEILEKMEPLEKLALDRSGIKELP 656 (1099)
Q Consensus 633 ~~~l~~l~~L~~L~L~~~~l~~lp 656 (1099)
...+..+++|+.|++++|.++.++
T Consensus 215 ~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 215 EIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp HHHHHHTTTEEEEEEESCBCTTCC
T ss_pred hhhhhhcccccEEECCCCcccccc
Confidence 445567999999999999998664
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=1.1e-23 Score=258.76 Aligned_cols=392 Identities=16% Similarity=0.146 Sum_probs=255.0
Q ss_pred hHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCC-----------ccCCCCeeEEEeecCCCCcCC-CCC-C-C-CCc
Q 001326 393 SLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGL-----------ECLPDGLRYLHWHECPLKSLP-SNF-D-L-ENL 457 (1099)
Q Consensus 393 ~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~-----------~~~~~~Lr~L~l~~~~l~~lp-~~~-~-l-~~L 457 (1099)
...+..+++|+.|++.++..-. ....++... ....++|++|++++|.+.... ..+ . + .+|
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L 140 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAA-----MFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDL 140 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGG-----GGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGC
T ss_pred HHHHHhCCCCeEEEecCCcchh-----hcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccC
Confidence 4556677888888886642100 000011111 112456888888887654321 111 2 2 348
Q ss_pred eEEECCCCC-cc--cccccccccCCccEEeccCCCCCCc----CCC-CCCCCCccEEEeeCCCCC----CccCccccCCC
Q 001326 458 IELDLPYSK-VE--QLWEGEKEAFKLKSIDLHQSHNLTR----IPK-QSEAPNLERINLWNCKNL----LYIPSHIQNFN 525 (1099)
Q Consensus 458 ~~L~L~~n~-i~--~l~~~~~~l~~L~~L~Ls~~~~l~~----~~~-~~~l~~L~~L~L~~~~~l----~~lp~~i~~l~ 525 (1099)
++|+|++|. +. .++.....+++|++|+|++|..... ++. ...+++|++|++++|... ..++..+.+++
T Consensus 141 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~ 220 (592)
T 3ogk_B 141 ETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220 (592)
T ss_dssp CEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred cEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence 888887775 22 2333335678888888888864322 111 245678888888877654 24455566788
Q ss_pred CCCEEEcCCCCCcccCCCCC-CCCCCcEEEccCCcCCCC---CC---CCCCCccEEEecCcCCcccCccccCCCCCcEEE
Q 001326 526 NLSMLSLRDCISLSCFPRNI-HFRSPVKIDFSGCVNLTE---FP---HISGNVVELKLFNTPIEEVPSSIESLPNLKILN 598 (1099)
Q Consensus 526 ~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~~~~l~~---l~---~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 598 (1099)
+|++|++++|. +..+|..+ .+++|+.|+++++..... .+ ....+++.|.+.++....+|..+..+++|++|+
T Consensus 221 ~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 221 SLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299 (592)
T ss_dssp TCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE
T ss_pred CCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe
Confidence 88888888864 33355444 677888888875433211 11 123467888888877778888888889999999
Q ss_pred eCCcccccccc-cccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccC-----------CCCc--ccCcccccCCC
Q 001326 599 LGFCKRLKRVS-TGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDR-----------SGIK--ELPSSIENLEG 664 (1099)
Q Consensus 599 L~~~~~~~~l~-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~-----------~~l~--~lp~~l~~l~~ 664 (1099)
+++|.+..... ..+..+++|++|++.++-....++.....+++|++|++++ +.++ .++.....+++
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE 379 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc
Confidence 99988544333 3467888999999985444444555567788899999983 4554 23344566889
Q ss_pred CcEEEccCCCCCCcccccccC-CCCCceeecC----CCCCccCC------ccccCCCCCcEEEccCCCC--CC--CCC-C
Q 001326 665 LKELQLMCCSKLGSLPESLGN-LKSLVVLDAN----RSAILQLP------SSIADLNKLRELCLSGCRG--FA--LPP-L 728 (1099)
Q Consensus 665 L~~L~L~~~~~l~~lp~~l~~-l~~L~~L~l~----~~~i~~lp------~~~~~l~~L~~L~L~~~~~--~~--l~~-l 728 (1099)
|++|++..+...+..+..+.. +++|+.|+++ .+.++..| ..+.++++|+.|+++.|.. .. +.. .
T Consensus 380 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~ 459 (592)
T 3ogk_B 380 LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459 (592)
T ss_dssp CSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred CeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH
Confidence 999999777666655555554 8889999886 55666543 3366788999999977653 11 111 2
Q ss_pred CCCCCCCEEeccCCCCcc--cccccCCCCCCCEEEccCCCCc--cccccccCCCCCCEEeecCCCC
Q 001326 729 STLSSLRTLTLSGCGIIE--ISQDICCLSSLESLNLAENNFE--SLPSSISQLSCLRRLCLRNCNM 790 (1099)
Q Consensus 729 ~~l~~L~~L~Ls~~~l~~--l~~~~~~l~sL~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c~~ 790 (1099)
..+++|++|+|++|.++. ++..+..+++|++|+|++|.++ .++..+..+++|+.|+|++|+.
T Consensus 460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 346789999999888874 5555678889999999999876 3555566788899999999873
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=6.1e-22 Score=221.36 Aligned_cols=245 Identities=22% Similarity=0.269 Sum_probs=122.2
Q ss_pred eEEEeecCCCCcCCCCCCCCCceEEECCCCCccccccc-ccccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCCC
Q 001326 436 RYLHWHECPLKSLPSNFDLENLIELDLPYSKVEQLWEG-EKEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKNL 514 (1099)
Q Consensus 436 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l 514 (1099)
+.++++++.++.+|..+ +++|++|+|++|+++.+|.. +..+++|++|++++|.+...
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--------------------- 67 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK--------------------- 67 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE---------------------
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc---------------------
Confidence 35666666677776644 25666666666666665544 24555555555555532211
Q ss_pred CccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCccccCCCCC
Q 001326 515 LYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNL 594 (1099)
Q Consensus 515 ~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L 594 (1099)
...+..+..+++|++|++++| .+..+|..+..+++|
T Consensus 68 ~~~~~~~~~~~~L~~L~Ls~n--------------------------------------------~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 68 GCCSQSDFGTTSLKYLDLSFN--------------------------------------------GVITMSSNFLGLEQL 103 (306)
T ss_dssp EEEEHHHHSCSCCCEEECCSC--------------------------------------------SEEEEEEEEETCTTC
T ss_pred cCcccccccccccCEEECCCC--------------------------------------------ccccChhhcCCCCCC
Confidence 111333444555555555543 222333334445555
Q ss_pred cEEEeCCcccccccc-cccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcc--cCcccccCCCCcEEEcc
Q 001326 595 KILNLGFCKRLKRVS-TGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKE--LPSSIENLEGLKELQLM 671 (1099)
Q Consensus 595 ~~L~L~~~~~~~~l~-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~L~ 671 (1099)
++|++++|.+....+ ..+..+++|++|++++|......+..+..+++|++|++++|.+.. +|..+..+++|+.|+++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 555555554433322 234444555555555544444444445555555555555555543 44455555555555555
Q ss_pred CCCCCCcccccccCCCCCceeecCCCCCccCCc-cccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcc-ccc
Q 001326 672 CCSKLGSLPESLGNLKSLVVLDANRSAILQLPS-SIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIE-ISQ 749 (1099)
Q Consensus 672 ~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~-l~~ 749 (1099)
+|.+.+..|..+..+++|+.|++++|.+..++. . +..+++|+.|++++|.+.. .+.
T Consensus 184 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------------------~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP----------------------YKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG----------------------GTTCTTCCEEECTTSCCCBCSSS
T ss_pred CCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh----------------------ccCcccCCEeECCCCCCcccCHH
Confidence 555444444444444444444444444444332 2 3444555555555555554 233
Q ss_pred ccCCC-CCCCEEEccCCCCc
Q 001326 750 DICCL-SSLESLNLAENNFE 768 (1099)
Q Consensus 750 ~~~~l-~sL~~L~L~~n~l~ 768 (1099)
.+..+ ++|+.|+|++|.++
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEE
T ss_pred HHHhhhccCCEEEccCCCee
Confidence 44554 36666666666554
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.2e-20 Score=222.06 Aligned_cols=220 Identities=27% Similarity=0.314 Sum_probs=122.7
Q ss_pred CCccEEEecCcCCcccC-ccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEc
Q 001326 569 GNVVELKLFNTPIEEVP-SSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLAL 647 (1099)
Q Consensus 569 ~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L 647 (1099)
.+++.|++++|.+..++ ..+..+++|++|+|++|.+....+..+.++++|++|+|++|......+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34555555556666554 44566666666666666655555555666666666666666555444445666666666666
Q ss_pred cCCCCcccCc-ccccCCCCcEEEccCCCCCCcccc-cccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCC
Q 001326 648 DRSGIKELPS-SIENLEGLKELQLMCCSKLGSLPE-SLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFAL 725 (1099)
Q Consensus 648 ~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l 725 (1099)
++|.++.++. .+.++++|+.|++++|..++.++. .+.++++|+.|++++|.+..+|. +..+++|+.|+|++|.+..+
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCcc
Confidence 6666665544 455566666666666555544443 35555556666666655555552 45555555555555555444
Q ss_pred CC--CCCCCCCCEEeccCCCCcccc-cccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCC
Q 001326 726 PP--LSTLSSLRTLTLSGCGIIEIS-QDICCLSSLESLNLAENNFESLPSS-ISQLSCLRRLCLRNCN 789 (1099)
Q Consensus 726 ~~--l~~l~~L~~L~Ls~~~l~~l~-~~~~~l~sL~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~ 789 (1099)
++ +..+++|+.|++++|.+..++ ..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 32 455555555555555555432 2355555555555555555544432 3445555555555543
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.3e-20 Score=221.86 Aligned_cols=237 Identities=22% Similarity=0.246 Sum_probs=207.8
Q ss_pred ccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCC
Q 001326 571 VVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRS 650 (1099)
Q Consensus 571 L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~ 650 (1099)
...++..+..+..+|..+. ++++.|+|++|.+....+..+.++++|++|+|++|......+..|..+++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3466777788889998765 78999999999998888889999999999999999988888889999999999999999
Q ss_pred CCcccCc-ccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCC-CCccCCc-cccCCCCCcEEEccCCCCCCCCC
Q 001326 651 GIKELPS-SIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRS-AILQLPS-SIADLNKLRELCLSGCRGFALPP 727 (1099)
Q Consensus 651 ~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~-~i~~lp~-~~~~l~~L~~L~L~~~~~~~l~~ 727 (1099)
.++.+|. .+..+++|+.|++++|.+....+..+..+++|+.|++++| .+..++. .+.++++|++|++++|.+..+|.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 9998886 5899999999999999988777778999999999999984 5556654 68899999999999999999999
Q ss_pred CCCCCCCCEEeccCCCCccc-ccccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCCCCCCCCC-C---CCCC
Q 001326 728 LSTLSSLRTLTLSGCGIIEI-SQDICCLSSLESLNLAENNFESL-PSSISQLSCLRRLCLRNCNMLQSLPE-L---PLGL 801 (1099)
Q Consensus 728 l~~l~~L~~L~Ls~~~l~~l-~~~~~~l~sL~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~-l---~~sL 801 (1099)
+..+++|++|+|++|.+..+ |..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+ ++.+|. . .++|
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHL 281 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCC
Confidence 99999999999999999986 56799999999999999999966 4578899999999999975 445553 2 3678
Q ss_pred CeeecccCc
Q 001326 802 RHLEASNCK 810 (1099)
Q Consensus 802 ~~L~i~~c~ 810 (1099)
+.|++++++
T Consensus 282 ~~L~L~~Np 290 (440)
T 3zyj_A 282 ERIHLHHNP 290 (440)
T ss_dssp CEEECCSSC
T ss_pred CEEEcCCCC
Confidence 888888765
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.3e-20 Score=222.65 Aligned_cols=235 Identities=25% Similarity=0.244 Sum_probs=146.1
Q ss_pred EEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCC
Q 001326 573 ELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGI 652 (1099)
Q Consensus 573 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l 652 (1099)
.++..+..+..+|..+. ++|+.|+|++|.+....+..+.++++|+.|+|++|......+..+..+++|++|+|++|.+
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 34444455555554432 4566666666666555555666666666666666665555555666666666666666666
Q ss_pred cccCcc-cccCCCCcEEEccCCCCCCcccccccCCCCCceeecCC-CCCccCCc-cccCCCCCcEEEccCCCCCCCCCCC
Q 001326 653 KELPSS-IENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANR-SAILQLPS-SIADLNKLRELCLSGCRGFALPPLS 729 (1099)
Q Consensus 653 ~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~-~~i~~lp~-~~~~l~~L~~L~L~~~~~~~l~~l~ 729 (1099)
+.+|.. +..+++|++|++++|.+....+..+..+++|+.|++++ +.+..++. .+..+++|+.|+|++|.+..+|.+.
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 215 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLT 215 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCT
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccccc
Confidence 655543 55666666666666665544445566666666666666 33444443 4666777777777777777777777
Q ss_pred CCCCCCEEeccCCCCccc-ccccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCCCCCCCCC-C---CCCCCe
Q 001326 730 TLSSLRTLTLSGCGIIEI-SQDICCLSSLESLNLAENNFESL-PSSISQLSCLRRLCLRNCNMLQSLPE-L---PLGLRH 803 (1099)
Q Consensus 730 ~l~~L~~L~Ls~~~l~~l-~~~~~~l~sL~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~-l---~~sL~~ 803 (1099)
.+++|++|+|++|.+..+ |..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+ +..+|. . .++|+.
T Consensus 216 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCE
T ss_pred ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCE
Confidence 777777777777777764 44577777777777777777744 4456667777777777763 344442 2 356666
Q ss_pred eecccCc
Q 001326 804 LEASNCK 810 (1099)
Q Consensus 804 L~i~~c~ 810 (1099)
|++++++
T Consensus 295 L~L~~Np 301 (452)
T 3zyi_A 295 LHLHHNP 301 (452)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 6666654
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=6.4e-21 Score=213.05 Aligned_cols=218 Identities=23% Similarity=0.225 Sum_probs=104.9
Q ss_pred CCcEEEeCCcccccccccccccCccccEEeccCCCCCC--ccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEc
Q 001326 593 NLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLE--SFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQL 670 (1099)
Q Consensus 593 ~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L 670 (1099)
+|+.|++++|.+....+..+.++++|++|++++|.... ..+..+..+++|++|++++|.+..+|..+..+++|++|++
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence 44444444444332222223444444444444443321 1133344445555555555555555555555555555555
Q ss_pred cCCCCCCccc-ccccCCCCCceeecCCCCCccC-CccccCCCCCcEEEccCCCCCC--CCC-CCCCCCCCEEeccCCCCc
Q 001326 671 MCCSKLGSLP-ESLGNLKSLVVLDANRSAILQL-PSSIADLNKLRELCLSGCRGFA--LPP-LSTLSSLRTLTLSGCGII 745 (1099)
Q Consensus 671 ~~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~--l~~-l~~l~~L~~L~Ls~~~l~ 745 (1099)
++|...+..+ ..+..+++|+.|++++|.+... +..+..+++|++|++++|.+.. .|. +..+++|++|++++|.+.
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence 5554433322 3344555555555555555432 3344555555555555555432 222 455555555555555555
Q ss_pred cc-ccccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCCCCCCCCC----CCCCCCeeecccCc
Q 001326 746 EI-SQDICCLSSLESLNLAENNFESLPS-SISQLSCLRRLCLRNCNMLQSLPE----LPLGLRHLEASNCK 810 (1099)
Q Consensus 746 ~l-~~~~~~l~sL~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~----l~~sL~~L~i~~c~ 810 (1099)
.+ |..+..+++|+.|+|++|.++.++. .+..+++|+.|++++|+.....|. .+++|+.|++++++
T Consensus 189 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 44 3345555556666666655554443 345555666666665544443332 22355666665554
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.3e-20 Score=222.71 Aligned_cols=158 Identities=27% Similarity=0.264 Sum_probs=93.8
Q ss_pred ccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccch-hhcCCCCCCEEEccCCCCcccCcccccCCCCc
Q 001326 588 IESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPE-ILEKMEPLEKLALDRSGIKELPSSIENLEGLK 666 (1099)
Q Consensus 588 i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~ 666 (1099)
+..+++|++|+|++|.+....+..+.++++|+.|++++|...+.++. .+..+++|+.|++++|.++.+|. +..+++|+
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 221 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLE 221 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCC
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-cccccccc
Confidence 34445555555555554443344455566666666666555555443 46777777888888777777753 66667777
Q ss_pred EEEccCCCCCCcccccccCCCCCceeecCCCCCccC-CccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCc
Q 001326 667 ELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQL-PSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGII 745 (1099)
Q Consensus 667 ~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~ 745 (1099)
.|++++|.+.+..|..+.++++|+.|++++|.+..+ +..+ ..+++|+.|+|++|.+.
T Consensus 222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------------------~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF----------------------DGLASLVELNLAHNNLS 279 (452)
T ss_dssp EEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT----------------------TTCTTCCEEECCSSCCS
T ss_pred EEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh----------------------cCCCCCCEEECCCCcCC
Confidence 777777766666666666666666666666665544 2333 44455555555555555
Q ss_pred ccccc-cCCCCCCCEEEccCCCCc
Q 001326 746 EISQD-ICCLSSLESLNLAENNFE 768 (1099)
Q Consensus 746 ~l~~~-~~~l~sL~~L~L~~n~l~ 768 (1099)
.++.. +..+++|+.|+|++|.+.
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccChHHhccccCCCEEEccCCCcC
Confidence 54433 455666666666666544
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=1.4e-20 Score=208.06 Aligned_cols=218 Identities=23% Similarity=0.284 Sum_probs=174.2
Q ss_pred cEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCC
Q 001326 572 VELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSG 651 (1099)
Q Consensus 572 ~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 651 (1099)
..++.+++.+..+|..+ .++|+.|++++|.+....+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 45566667777777544 4678888888887776666677888888888888887766667778888888888888886
Q ss_pred -Cccc-CcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCc-cccCCCCCcEEEccCCCCCCCCC-
Q 001326 652 -IKEL-PSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPS-SIADLNKLRELCLSGCRGFALPP- 727 (1099)
Q Consensus 652 -l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~l~~- 727 (1099)
++.+ |..+..+++|++|++++|...+..|..+..+++|++|++++|.+..++. .+..+++|++|++++|.+..++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 7766 5677888888888888888877777778888888888888888887765 47788888999998888877765
Q ss_pred -CCCCCCCCEEeccCCCCccc-ccccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCCCC
Q 001326 728 -LSTLSSLRTLTLSGCGIIEI-SQDICCLSSLESLNLAENNFESLPS-SISQLSCLRRLCLRNCNML 791 (1099)
Q Consensus 728 -l~~l~~L~~L~Ls~~~l~~l-~~~~~~l~sL~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l 791 (1099)
+..+++|++|++++|.+..+ |..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|+..
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 77888999999999988875 6678888999999999999887774 4788899999999887644
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=1.5e-22 Score=227.26 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=87.3
Q ss_pred CCCCEEEccCCCCcccCc-ccccCCCCcEEEccCCCCCCcccccc-cCCCCCceeecCCCCCccCCccccCCCCCcEEEc
Q 001326 640 EPLEKLALDRSGIKELPS-SIENLEGLKELQLMCCSKLGSLPESL-GNLKSLVVLDANRSAILQLPSSIADLNKLRELCL 717 (1099)
Q Consensus 640 ~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L 717 (1099)
++|+.|++++|.++.++. .+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+..++.. ..+++|++|++
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~L 198 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDL 198 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEEC
Confidence 445555555555554432 44455555555555555444444333 2455555555555555554322 23556666666
Q ss_pred cCCCCCCCCC-CCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCc--cccccccCCCCCCEEeecCCCCCC
Q 001326 718 SGCRGFALPP-LSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFE--SLPSSISQLSCLRRLCLRNCNMLQ 792 (1099)
Q Consensus 718 ~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c~~l~ 792 (1099)
++|.+..+++ +..+++|+.|++++|.+..+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+.++
T Consensus 199 s~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 199 SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 6665555443 55566666666666666666666666777777777777766 556666667777777776554443
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=5.2e-21 Score=214.71 Aligned_cols=262 Identities=19% Similarity=0.199 Sum_probs=189.0
Q ss_pred CccEEEecCcCCcccC-ccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEcc
Q 001326 570 NVVELKLFNTPIEEVP-SSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALD 648 (1099)
Q Consensus 570 ~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 648 (1099)
+++.|++++|.+..++ ..+..+++|++|++++|.+.+..+ +..+++|++|++++|...+. ...++|+.|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEECC
Confidence 4566666677777765 467888888888888888766554 77888888888888765432 234788888888
Q ss_pred CCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCC-ccc-cCCCCCcEEEccCCCCCCCC
Q 001326 649 RSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLP-SSI-ADLNKLRELCLSGCRGFALP 726 (1099)
Q Consensus 649 ~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~~-~~l~~L~~L~L~~~~~~~l~ 726 (1099)
+|.++.++.. .+++|+.|++++|...+..+..+..+++|+.|++++|.+..++ ..+ ..+++|++|++++|.+..++
T Consensus 108 ~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp SSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence 8888876643 4678888888888887777777888888888888888888653 334 46788888888888888777
Q ss_pred CCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCC-CCCCCCCCCCCeee
Q 001326 727 PLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNML-QSLPELPLGLRHLE 805 (1099)
Q Consensus 727 ~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l-~~lp~l~~sL~~L~ 805 (1099)
....+++|++|++++|.+..+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+.. ..+|..+
T Consensus 186 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~------- 258 (317)
T 3o53_A 186 GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF------- 258 (317)
T ss_dssp CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHH-------
T ss_pred cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHH-------
Confidence 77778888888888888888877788888888888888888888888888888888888887654 2222211
Q ss_pred cccCcCcccCCCCchhhHHhhHhHHhhhhcccCCCcccCCCceEEEcCCCCcc
Q 001326 806 ASNCKRLQSFPESPSCIEELHASLVEKLSDQAHGSVSLTAPGMLKFDNCLKLN 858 (1099)
Q Consensus 806 i~~c~~L~~l~~~~~~L~~L~~~~~~~L~~~~~~~~~~~~l~~l~i~nC~~L~ 858 (1099)
...+.++.|++..+..++......+..+......-..|..+.
T Consensus 259 -----------~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 259 -----------SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp -----------HTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCT
T ss_pred -----------hccccceEEECCCchhccCCchhccCCCceecccceeeccCC
Confidence 122456666666666666554443444433333334466664
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=2e-20 Score=206.62 Aligned_cols=208 Identities=25% Similarity=0.300 Sum_probs=182.3
Q ss_pred CCCCCC-CCCCccEEEecCcCCcccCc-cccCCCCCcEEEeCCcccccccccccccCccccEEeccCCC-CCCccchhhc
Q 001326 561 LTEFPH-ISGNVVELKLFNTPIEEVPS-SIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCS-DLESFPEILE 637 (1099)
Q Consensus 561 l~~l~~-~~~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~-~~~~~~~~l~ 637 (1099)
++.+|. ...+++.|+++++.+..++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|. .....+..+.
T Consensus 23 l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 23 LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp CSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred cccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 444543 34578888888899998874 58899999999999999888778899999999999999998 4444478899
Q ss_pred CCCCCCEEEccCCCCccc-CcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCc-cccCCCCCcEE
Q 001326 638 KMEPLEKLALDRSGIKEL-PSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPS-SIADLNKLREL 715 (1099)
Q Consensus 638 ~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L 715 (1099)
.+++|++|++++|.++.+ |..+.++++|++|++++|...+..+..+..+++|+.|++++|.+..+|. .+..+++|+.|
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEE
Confidence 999999999999999977 5678899999999999999887777779999999999999999998876 58899999999
Q ss_pred EccCCCCCCCCC--CCCCCCCCEEeccCCCCcccccc-cCCCCCCCEEEccCCCCc
Q 001326 716 CLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQD-ICCLSSLESLNLAENNFE 768 (1099)
Q Consensus 716 ~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~~-~~~l~sL~~L~L~~n~l~ 768 (1099)
++++|.+...++ +..+++|+.|++++|.+..++.. +..+++|+.|++++|.+.
T Consensus 183 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 999999877633 88899999999999999987754 899999999999999887
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=9.7e-22 Score=220.15 Aligned_cols=243 Identities=20% Similarity=0.186 Sum_probs=191.9
Q ss_pred ccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCc--ccCcccc-------CC
Q 001326 521 IQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIE--EVPSSIE-------SL 591 (1099)
Q Consensus 521 i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~--~lp~~i~-------~l 591 (1099)
++..++|++|++++|.. .+|..+ ...++.|+++++.+. .+|..+. .+
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~----------------------~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l 94 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQF----------------------TDIIKSLSLKRLTVRAARIPSRILFGALRVLGI 94 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHH----------------------HHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTT
T ss_pred EccCCCceeEeeccccc--ccHHHH----------------------HHHHhhcccccccccCCCcCHHHHHHHHHhcCc
Confidence 34556777777777644 444322 112445555555554 3555454 68
Q ss_pred CCCcEEEeCCccccccccccc--ccCccccEEeccCCCCCCccchhhcCC-----CCCCEEEccCCCCcccC-cccccCC
Q 001326 592 PNLKILNLGFCKRLKRVSTGI--CKLKYLRCLYLLDCSDLESFPEILEKM-----EPLEKLALDRSGIKELP-SSIENLE 663 (1099)
Q Consensus 592 ~~L~~L~L~~~~~~~~l~~~l--~~l~~L~~L~L~~~~~~~~~~~~l~~l-----~~L~~L~L~~~~l~~lp-~~l~~l~ 663 (1099)
++|++|++++|.+.+.+|..+ ..+++|++|++++|...+. |..+..+ ++|++|++++|.++.++ ..+..++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 999999999999888888876 8899999999999987776 7767666 89999999999999877 6889999
Q ss_pred CCcEEEccCCCCCCc--ccccc--cCCCCCceeecCCCCCccCC----ccccCCCCCcEEEccCCCCCCCC---CCCCCC
Q 001326 664 GLKELQLMCCSKLGS--LPESL--GNLKSLVVLDANRSAILQLP----SSIADLNKLRELCLSGCRGFALP---PLSTLS 732 (1099)
Q Consensus 664 ~L~~L~L~~~~~l~~--lp~~l--~~l~~L~~L~l~~~~i~~lp----~~~~~l~~L~~L~L~~~~~~~l~---~l~~l~ 732 (1099)
+|+.|++++|...+. ++..+ ..+++|++|++++|.+..++ ..+..+++|+.|++++|.+...+ .+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 999999999987765 34444 88999999999999998543 23467899999999999987754 356689
Q ss_pred CCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCC
Q 001326 733 SLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNML 791 (1099)
Q Consensus 733 ~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l 791 (1099)
+|++|++++|.++.+|..+. ++|++|+|++|+++.+|. +..+++|+.|++++|+..
T Consensus 254 ~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 254 QLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred CCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 99999999999999988776 899999999999998886 889999999999998643
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=6.2e-22 Score=221.71 Aligned_cols=151 Identities=25% Similarity=0.233 Sum_probs=76.6
Q ss_pred CCCcEEEeCCcccccccccccccCccccEEeccCCCCCCc--cchhh--cCCCCCCEEEccCCCCcccCc----ccccCC
Q 001326 592 PNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLES--FPEIL--EKMEPLEKLALDRSGIKELPS----SIENLE 663 (1099)
Q Consensus 592 ~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~--~~~~l--~~l~~L~~L~L~~~~l~~lp~----~l~~l~ 663 (1099)
++|++|++++|.+.+..+..++.+++|++|++++|...+. ++..+ ..+++|++|++++|.++.++. .+.+++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 4555555555554444444555555555555555554332 22233 556666666666666663322 123456
Q ss_pred CCcEEEccCCCCCCccc-ccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCC
Q 001326 664 GLKELQLMCCSKLGSLP-ESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGC 742 (1099)
Q Consensus 664 ~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~ 742 (1099)
+|+.|++++|.+.+..| ..+..+++|+.|++++|.++.+|..+. ++|++|++++|.+..+|.+..+++|++|++++|
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEeccCC
Confidence 66666666666555443 234445556666666665555555443 445555555444444444444444444444444
Q ss_pred CC
Q 001326 743 GI 744 (1099)
Q Consensus 743 ~l 744 (1099)
.+
T Consensus 307 ~l 308 (312)
T 1wwl_A 307 PF 308 (312)
T ss_dssp TT
T ss_pred CC
Confidence 33
No 72
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=3.7e-22 Score=245.04 Aligned_cols=383 Identities=16% Similarity=0.098 Sum_probs=266.8
Q ss_pred hcCCCCCcEEEeeCCCCCCCcccCceeecCCCCcc-CCCCeeEEEeecCCC-C--cCCCCC-CCCCceEEECCCCCccc-
Q 001326 396 FEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLEC-LPDGLRYLHWHECPL-K--SLPSNF-DLENLIELDLPYSKVEQ- 469 (1099)
Q Consensus 396 f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~l-~--~lp~~~-~l~~L~~L~L~~n~i~~- 469 (1099)
+..+++|+.|+++++.++.. ....+.. .+.+|++|++++|.. . .++... .+++|++|+|++|.+..
T Consensus 108 ~~~~~~L~~L~L~~~~i~~~--------~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~ 179 (592)
T 3ogk_B 108 SNNLRQLKSVHFRRMIVSDL--------DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK 179 (592)
T ss_dssp HHHCTTCCEEEEESCBCCHH--------HHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECC
T ss_pred HhhCCCCCeEEeeccEecHH--------HHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCc
Confidence 44789999999998765321 0111111 223599999998862 1 122222 67899999999998753
Q ss_pred ----ccccccccCCccEEeccCCCCCC----cCCC-CCCCCCccEEEeeCCCCCCccCccccCCCCCCEEEcCCCCCc--
Q 001326 470 ----LWEGEKEAFKLKSIDLHQSHNLT----RIPK-QSEAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSLRDCISL-- 538 (1099)
Q Consensus 470 ----l~~~~~~l~~L~~L~Ls~~~~l~----~~~~-~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l-- 538 (1099)
++.....+++|++|++++|.... .++. +..+++|++|++++|.. ..+|..+..+++|++|+++.+...
T Consensus 180 ~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 180 DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp CSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTT
T ss_pred chhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccc
Confidence 23344678999999999987641 2222 35789999999999864 457788999999999999864332
Q ss_pred -ccCCCCC-CCCCCcEEEccCCcCCCCCCC---CCCCccEEEecCcCCcc--cCccccCCCCCcEEEeCCcccccccccc
Q 001326 539 -SCFPRNI-HFRSPVKIDFSGCVNLTEFPH---ISGNVVELKLFNTPIEE--VPSSIESLPNLKILNLGFCKRLKRVSTG 611 (1099)
Q Consensus 539 -~~lp~~~-~l~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~l~~~ 611 (1099)
...+..+ .+.+|+.++++++. ...+|. ...+|+.|++++|.+.. ++..+..+++|+.|+++++-....++..
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~ 337 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL 337 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH
T ss_pred hHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHH
Confidence 1222222 67889999998752 333443 34578999999988653 3344688999999999955433444555
Q ss_pred cccCccccEEeccC----------CCCCCc--cchhhcCCCCCCEEEccCCCCcc-cCcccc-cCCCCcEEEccC---CC
Q 001326 612 ICKLKYLRCLYLLD----------CSDLES--FPEILEKMEPLEKLALDRSGIKE-LPSSIE-NLEGLKELQLMC---CS 674 (1099)
Q Consensus 612 l~~l~~L~~L~L~~----------~~~~~~--~~~~l~~l~~L~~L~L~~~~l~~-lp~~l~-~l~~L~~L~L~~---~~ 674 (1099)
...+++|++|++++ |..... ++.....+++|++|+++.+.++. .+..+. .+++|+.|++++ |.
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 57789999999995 555442 33445678999999998888873 334454 489999999984 33
Q ss_pred CCCc------ccccccCCCCCceeecCCCC--Ccc-CCc-cccCCCCCcEEEccCCCCCC--CCC-CCCCCCCCEEeccC
Q 001326 675 KLGS------LPESLGNLKSLVVLDANRSA--ILQ-LPS-SIADLNKLRELCLSGCRGFA--LPP-LSTLSSLRTLTLSG 741 (1099)
Q Consensus 675 ~l~~------lp~~l~~l~~L~~L~l~~~~--i~~-lp~-~~~~l~~L~~L~L~~~~~~~--l~~-l~~l~~L~~L~Ls~ 741 (1099)
..+. ++..+.++++|+.|+++.|. ++. .+. ....+++|+.|+|++|.+.. ++. +..+++|++|+|++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence 4443 33446779999999997654 331 222 23458999999999998653 232 57789999999999
Q ss_pred CCCcc--cccccCCCCCCCEEEccCCCCcc--ccccccCCCCCCEEeecCC
Q 001326 742 CGIIE--ISQDICCLSSLESLNLAENNFES--LPSSISQLSCLRRLCLRNC 788 (1099)
Q Consensus 742 ~~l~~--l~~~~~~l~sL~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~c 788 (1099)
|.++. ++..+..+++|++|+|++|+++. +......+|.|....+..+
T Consensus 498 n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 99874 45556678999999999999873 2333456787777766654
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=3.2e-20 Score=220.58 Aligned_cols=213 Identities=19% Similarity=0.196 Sum_probs=176.9
Q ss_pred CccEEEecCcCCcccC-ccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEcc
Q 001326 570 NVVELKLFNTPIEEVP-SSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALD 648 (1099)
Q Consensus 570 ~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 648 (1099)
+++.|++++|.+..++ ..+..+++|++|+|++|.+.+..| +..+++|++|++++|...+.. ..++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 5677777777787775 578889999999999988776655 888899999999988654322 33889999999
Q ss_pred CCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccC-Ccccc-CCCCCcEEEccCCCCCCCC
Q 001326 649 RSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQL-PSSIA-DLNKLRELCLSGCRGFALP 726 (1099)
Q Consensus 649 ~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~-~l~~L~~L~L~~~~~~~l~ 726 (1099)
+|.++.++.. .+++|+.|++++|.+.+..|..++.+++|+.|++++|.+... |..+. .+++|+.|+|++|.+..++
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 9998877653 568899999999998888888888899999999999988864 55554 7899999999999988888
Q ss_pred CCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCC
Q 001326 727 PLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNML 791 (1099)
Q Consensus 727 ~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l 791 (1099)
+...+++|+.|+|++|.++.+|+.+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+..
T Consensus 186 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 186 GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 87788999999999999998888888889999999999999988888888899999999887654
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=2.1e-20 Score=222.17 Aligned_cols=167 Identities=15% Similarity=0.116 Sum_probs=113.4
Q ss_pred ccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCccc-CcccccCCCCcEEEccCCCCCCccccccc-CCCCCceee
Q 001326 616 KYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKEL-PSSIENLEGLKELQLMCCSKLGSLPESLG-NLKSLVVLD 693 (1099)
Q Consensus 616 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~ 693 (1099)
++|+.|++++|......+. .+++|+.|++++|.++.+ |..+.++++|+.|++++|.+.+..|..+. .+++|+.|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 3444444444443333222 235566666666666544 33556666666666666666665555554 567777777
Q ss_pred cCCCCCccCCccccCCCCCcEEEccCCCCCCCCC-CCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCc--cc
Q 001326 694 ANRSAILQLPSSIADLNKLRELCLSGCRGFALPP-LSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFE--SL 770 (1099)
Q Consensus 694 l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~--~l 770 (1099)
+++|.+..+|.. ..+++|+.|+|++|.+..+|+ +..+++|+.|++++|.+..+|..+..+++|+.|++++|.+. .+
T Consensus 176 Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 176 LQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred cCCCcccccccc-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence 777776666432 347777777777777766654 66778888888888888888888888899999999999888 77
Q ss_pred cccccCCCCCCEEeec
Q 001326 771 PSSISQLSCLRRLCLR 786 (1099)
Q Consensus 771 p~~l~~l~~L~~L~L~ 786 (1099)
|..+..++.|+.|+++
T Consensus 255 ~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 255 RDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCCcEEecc
Confidence 7888888888888886
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=2.1e-19 Score=197.46 Aligned_cols=212 Identities=22% Similarity=0.241 Sum_probs=156.5
Q ss_pred CcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccC-
Q 001326 578 NTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELP- 656 (1099)
Q Consensus 578 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp- 656 (1099)
+..+..+|..+. ++|++|++++|.+....+..+.++++|++|++++|......+..+..+++|++|++++|.++.++
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 344555555442 46777777777666555556677777777777777665555566777777888888887777665
Q ss_pred cccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCcc--CCccccCCCCCcEEEccCCCCCCCCC--CCCCC
Q 001326 657 SSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQ--LPSSIADLNKLRELCLSGCRGFALPP--LSTLS 732 (1099)
Q Consensus 657 ~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~l~~--l~~l~ 732 (1099)
..+.++++|++|++++|...+..+..+..+++|++|++++|.+.. +|..+..+++|++|++++|.+..++. +..++
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 457777888888888877766666567788888888888888875 57788888888888888888776653 44444
Q ss_pred CCC----EEeccCCCCcccccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCCC
Q 001326 733 SLR----TLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSS-ISQLSCLRRLCLRNCNML 791 (1099)
Q Consensus 733 ~L~----~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~~l 791 (1099)
+|+ .|++++|.+..++.......+|+.|++++|.++.+|.. +..+++|+.|++++|+..
T Consensus 174 ~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 454 88999999998887766667899999999999988765 577999999999998644
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=3.4e-22 Score=245.49 Aligned_cols=397 Identities=16% Similarity=0.121 Sum_probs=243.0
Q ss_pred hHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCC-----------CccCCCCeeEEEeecCCCCcCC-CCC--CCCCce
Q 001326 393 SLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDG-----------LECLPDGLRYLHWHECPLKSLP-SNF--DLENLI 458 (1099)
Q Consensus 393 ~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~-----------~~~~~~~Lr~L~l~~~~l~~lp-~~~--~l~~L~ 458 (1099)
...+.++++|+.|++.++..-. .....+.. +....++|++|++++|.+.... ..+ .+++|+
T Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~-----~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~ 133 (594)
T 2p1m_B 59 ATVIRRFPKVRSVELKGKPHFA-----DFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFK 133 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCGGG-----GGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCC
T ss_pred HHHHhhCCCceEEeccCCCchh-----hcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCc
Confidence 3567788899999998764200 00000111 1123457888998888765321 112 477888
Q ss_pred EEECCCC-Cccc--ccccccccCCccEEeccCCCCCCc----CCCC-CCCCCccEEEeeCCC-CC--CccCccccCCCCC
Q 001326 459 ELDLPYS-KVEQ--LWEGEKEAFKLKSIDLHQSHNLTR----IPKQ-SEAPNLERINLWNCK-NL--LYIPSHIQNFNNL 527 (1099)
Q Consensus 459 ~L~L~~n-~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~----~~~~-~~l~~L~~L~L~~~~-~l--~~lp~~i~~l~~L 527 (1099)
+|+|++| .+.. ++.....+++|++|+|++|.+... ++.+ ..+++|++|++++|. .. ..++..+.++++|
T Consensus 134 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L 213 (594)
T 2p1m_B 134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213 (594)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTC
T ss_pred EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCC
Confidence 8888888 5553 445456788889999888873321 2222 467788888888875 11 1122223457888
Q ss_pred CEEEcCCCCCcccCCCCC-CCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCccccCCCCCcEE-EeCCcccc
Q 001326 528 SMLSLRDCISLSCFPRNI-HFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKIL-NLGFCKRL 605 (1099)
Q Consensus 528 ~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L-~L~~~~~~ 605 (1099)
++|++++|..+..+|..+ .+++|+.|+++++.. .+..+.+..++..+.++++|+.| .+.+.. .
T Consensus 214 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~--------------~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~ 278 (594)
T 2p1m_B 214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA--------------EVRPDVYSGLSVALSGCKELRCLSGFWDAV-P 278 (594)
T ss_dssp CEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC--------------CCCHHHHHHHHHHHHTCTTCCEEECCBTCC-G
T ss_pred cEEecCCCCcHHHHHHHHhcCCcceEcccccccC--------------ccchhhHHHHHHHHhcCCCcccccCCcccc-h
Confidence 888888886666555544 677788887766542 01223444555567777888877 333322 2
Q ss_pred cccccccccCccccEEeccCCCCCCc-cchhhcCCCCCCEEEccCCCCc--ccCcccccCCCCcEEEccCC--------C
Q 001326 606 KRVSTGICKLKYLRCLYLLDCSDLES-FPEILEKMEPLEKLALDRSGIK--ELPSSIENLEGLKELQLMCC--------S 674 (1099)
Q Consensus 606 ~~l~~~l~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~L~~~--------~ 674 (1099)
..++..+..+++|++|++++|..... +...+..+++|+.|++++| +. .++.....+++|++|++.+| .
T Consensus 279 ~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~ 357 (594)
T 2p1m_B 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357 (594)
T ss_dssp GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence 34454455677888888888773322 2334567888888888877 33 23333345788888888442 2
Q ss_pred CCC-c-ccccccCCCCCceeecCCCCCccC-Cccc-cCCCCCcEEEcc-----CCC-CCCCCC-------CCCCCCCCEE
Q 001326 675 KLG-S-LPESLGNLKSLVVLDANRSAILQL-PSSI-ADLNKLRELCLS-----GCR-GFALPP-------LSTLSSLRTL 737 (1099)
Q Consensus 675 ~l~-~-lp~~l~~l~~L~~L~l~~~~i~~l-p~~~-~~l~~L~~L~L~-----~~~-~~~l~~-------l~~l~~L~~L 737 (1099)
..+ . +......+++|+.|.+..+.++.. +..+ ..+++|+.|+++ +|. +...|. +..+++|+.|
T Consensus 358 ~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L 437 (594)
T 2p1m_B 358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEE
T ss_pred CCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEE
Confidence 221 1 111123477888887777776632 2223 357888888888 333 332222 4567889999
Q ss_pred eccCCCCcc-cccccC-CCCCCCEEEccCCCCcc--ccccccCCCCCCEEeecCCCCCCC----CCCCCCCCCeeecccC
Q 001326 738 TLSGCGIIE-ISQDIC-CLSSLESLNLAENNFES--LPSSISQLSCLRRLCLRNCNMLQS----LPELPLGLRHLEASNC 809 (1099)
Q Consensus 738 ~Ls~~~l~~-l~~~~~-~l~sL~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~c~~l~~----lp~l~~sL~~L~i~~c 809 (1099)
++++ .++. .+..+. .+++|+.|+|++|.++. ++.....+++|+.|+|++|+.... +....++|+.|++++|
T Consensus 438 ~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 438 SLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp ECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred eecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 9977 5543 223333 37889999999998862 232236688999999999886221 1123478999999998
Q ss_pred cC
Q 001326 810 KR 811 (1099)
Q Consensus 810 ~~ 811 (1099)
+.
T Consensus 517 ~~ 518 (594)
T 2p1m_B 517 SV 518 (594)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1.9e-18 Score=190.77 Aligned_cols=196 Identities=24% Similarity=0.263 Sum_probs=122.2
Q ss_pred cCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEE
Q 001326 589 ESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKEL 668 (1099)
Q Consensus 589 ~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L 668 (1099)
.++++|+.++++++.+. .+|..+. ++++.|++++|......+..+..+++|+.|++++|.++.++.. ..+++|+.|
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 34444555555544432 2333222 3455555555555444455555666666666666666655443 556666666
Q ss_pred EccCCCCCCcccccccCCCCCceeecCCCCCccCC-ccccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCc
Q 001326 669 QLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLP-SSIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGII 745 (1099)
Q Consensus 669 ~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~ 745 (1099)
++++|.+. .+|..+..+++|+.|++++|.++.+| ..+..+++|++|+|++|.+..+++ +..+++|+.|++++|.+.
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 66666543 45555566666666666666666665 356666777777777777666655 566777777777777777
Q ss_pred ccccc-cCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCC
Q 001326 746 EISQD-ICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCN 789 (1099)
Q Consensus 746 ~l~~~-~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 789 (1099)
.+|.. +..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 77665 466778888888888888777777777777777777765
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=3.1e-18 Score=189.05 Aligned_cols=195 Identities=19% Similarity=0.157 Sum_probs=172.1
Q ss_pred CccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccC
Q 001326 570 NVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDR 649 (1099)
Q Consensus 570 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 649 (1099)
+++.+++.++.+..+|..+. ++|+.|++++|.+....+..+..+++|+.|++++|..... +. ...+++|+.|++++
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSH 86 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCS
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCC
Confidence 45667777778888887664 6889999999998887788889999999999999876553 33 27899999999999
Q ss_pred CCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCc-cccCCCCCcEEEccCCCCCCCCC-
Q 001326 650 SGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPS-SIADLNKLRELCLSGCRGFALPP- 727 (1099)
Q Consensus 650 ~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~l~~- 727 (1099)
|.++.+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..+|. .+..+++|+.|+|++|.+..+|.
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 166 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence 9999999999999999999999999888777889999999999999999998876 46789999999999999998887
Q ss_pred -CCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCc
Q 001326 728 -LSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFE 768 (1099)
Q Consensus 728 -l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~ 768 (1099)
+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|.+.
T Consensus 167 ~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 167 LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred HhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 67899999999999999999999999999999999999876
No 79
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=5.2e-21 Score=234.96 Aligned_cols=360 Identities=17% Similarity=0.142 Sum_probs=213.1
Q ss_pred CCeeEEEeecCCC-Cc---CCCCC-------------CCCCceEEECCCCCcccc-cccc-cccCCccEEeccCCCCCCc
Q 001326 433 DGLRYLHWHECPL-KS---LPSNF-------------DLENLIELDLPYSKVEQL-WEGE-KEAFKLKSIDLHQSHNLTR 493 (1099)
Q Consensus 433 ~~Lr~L~l~~~~l-~~---lp~~~-------------~l~~L~~L~L~~n~i~~l-~~~~-~~l~~L~~L~Ls~~~~l~~ 493 (1099)
++|+.|++++++. .. .|..+ .+++|++|+|++|.+... +..+ ..+++|++|+|++|.....
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 5689999998762 11 12111 345566666666555421 1222 1355555555555532222
Q ss_pred --CCCC-CCCCCccEEEeeCCCCCCcc----CccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCC
Q 001326 494 --IPKQ-SEAPNLERINLWNCKNLLYI----PSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPH 566 (1099)
Q Consensus 494 --~~~~-~~l~~L~~L~L~~~~~l~~l----p~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~ 566 (1099)
++.+ ..+++|++|+|++|...... +.....+++|++|++++|. ..+... .+..+..
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~---------------~l~~l~~ 208 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFS---------------ALERLVT 208 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHH---------------HHHHHHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHH---------------HHHHHHH
Confidence 2222 24555555555555422211 1122244455555555543 001000 0000001
Q ss_pred CCCCccEEEecCc-CCcccCccccCCCCCcEEEeCCccc------ccccccccccCccccEE-eccCCCCCCccchhhcC
Q 001326 567 ISGNVVELKLFNT-PIEEVPSSIESLPNLKILNLGFCKR------LKRVSTGICKLKYLRCL-YLLDCSDLESFPEILEK 638 (1099)
Q Consensus 567 ~~~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~L~~~~~------~~~l~~~l~~l~~L~~L-~L~~~~~~~~~~~~l~~ 638 (1099)
...+|+.|++.++ .+..+|..+..+++|+.|+++.+.. ...++..+.++++|+.| .+.+. ....++..+..
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~ 287 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSV 287 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHHHHh
Confidence 1234555555554 4445677788899999999877642 22344567889999999 44432 23456666678
Q ss_pred CCCCCEEEccCCCCcc--cCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCC---------CCCcc--CCcc
Q 001326 639 MEPLEKLALDRSGIKE--LPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANR---------SAILQ--LPSS 705 (1099)
Q Consensus 639 l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~---------~~i~~--lp~~ 705 (1099)
+++|++|++++|.++. ++..+..+++|++|++++|-....++.....+++|++|++.+ +.++. +...
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 8999999999998763 344467899999999999822223333445689999999944 33332 1222
Q ss_pred ccCCCCCcEEEccCCCCCCCC--CC-CCCCCCCEEecc--C----CCCcccc------cccCCCCCCCEEEccCCCCc-c
Q 001326 706 IADLNKLRELCLSGCRGFALP--PL-STLSSLRTLTLS--G----CGIIEIS------QDICCLSSLESLNLAENNFE-S 769 (1099)
Q Consensus 706 ~~~l~~L~~L~L~~~~~~~l~--~l-~~l~~L~~L~Ls--~----~~l~~l~------~~~~~l~sL~~L~L~~n~l~-~ 769 (1099)
...+++|+.|.+..+.+.... .+ ..+++|+.|+++ + +.++..| ..+..+++|+.|+|++ +++ .
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 345899999988777654321 12 257899999999 3 4555332 2356789999999987 555 2
Q ss_pred ccccccC-CCCCCEEeecCCCCCCCCC----CCCCCCCeeecccCcC
Q 001326 770 LPSSISQ-LSCLRRLCLRNCNMLQSLP----ELPLGLRHLEASNCKR 811 (1099)
Q Consensus 770 lp~~l~~-l~~L~~L~L~~c~~l~~lp----~l~~sL~~L~i~~c~~ 811 (1099)
.+..+.. +++|+.|+|++|......+ ...++|+.|++++|+.
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 2334444 8999999999987432211 2357999999999985
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=4.9e-18 Score=185.78 Aligned_cols=195 Identities=24% Similarity=0.277 Sum_probs=117.1
Q ss_pred ccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCC
Q 001326 571 VVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRS 650 (1099)
Q Consensus 571 L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~ 650 (1099)
.+.++++++.++.+|..+. ++|+.|++++|.+....+..+..+++|++|++++|......+..+..
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~------------ 83 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE------------ 83 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS------------
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC------------
Confidence 4456666666666665443 45666666666554443344445555555555444443333333344
Q ss_pred CCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCc-cccCCCCCcEEEccCCCCCCCCC--
Q 001326 651 GIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPS-SIADLNKLRELCLSGCRGFALPP-- 727 (1099)
Q Consensus 651 ~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~l~~-- 727 (1099)
+++|++|++++|......+..+..+++|++|++++|.+..++. .+..+++|++|+|++|.+..++.
T Consensus 84 -----------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 152 (270)
T 2o6q_A 84 -----------LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152 (270)
T ss_dssp -----------CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred -----------CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence 4555555555554444333444555556666666655555543 34566666666666666665554
Q ss_pred CCCCCCCCEEeccCCCCcccccc-cCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCC
Q 001326 728 LSTLSSLRTLTLSGCGIIEISQD-ICCLSSLESLNLAENNFESLPSS-ISQLSCLRRLCLRNCNM 790 (1099)
Q Consensus 728 l~~l~~L~~L~Ls~~~l~~l~~~-~~~l~sL~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~~ 790 (1099)
+..+++|++|++++|.+..++.. +..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+.
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 56677777777777777776654 67778888888888888777653 66788888888888753
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1.2e-18 Score=187.07 Aligned_cols=206 Identities=18% Similarity=0.249 Sum_probs=120.7
Q ss_pred CCCCCCCCCCccEEEecCcCCcccCc-cccCCCCCcEEEeCCcc-cccccccccccCccccEEeccC-CCCCCccchhhc
Q 001326 561 LTEFPHISGNVVELKLFNTPIEEVPS-SIESLPNLKILNLGFCK-RLKRVSTGICKLKYLRCLYLLD-CSDLESFPEILE 637 (1099)
Q Consensus 561 l~~l~~~~~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~-~~~~l~~~l~~l~~L~~L~L~~-~~~~~~~~~~l~ 637 (1099)
++.+|....+++.|++++|.+..+|. .+..+++|++|++++|. +....+..+.++++|++|++++ |......+..+.
T Consensus 23 l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 23 IQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp CSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred ccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 55555544456666666666666665 45666666666666665 3333333455555555555555 333322233445
Q ss_pred CCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCC-CCccCCc-cccCCCCCc-E
Q 001326 638 KMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRS-AILQLPS-SIADLNKLR-E 714 (1099)
Q Consensus 638 ~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~-~i~~lp~-~~~~l~~L~-~ 714 (1099)
.+++|++|++++|.++.+|. +..+++|+ .|+.|++++| .+..+|. .+..+++|+ .
T Consensus 103 ~l~~L~~L~l~~n~l~~lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~ 160 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKMFPD-LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLCNETLT 160 (239)
T ss_dssp CCTTCCEEEEEEECCCSCCC-CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEE
T ss_pred CCCCCCEEeCCCCCCccccc-cccccccc---------------------cccEEECCCCcchhhcCcccccchhcceeE
Confidence 55555555555555555444 44444444 0005555555 4554443 355556666 6
Q ss_pred EEccCCCCCCCCC-CCCCCCCCEEeccCCC-Cccccc-ccCCC-CCCCEEEccCCCCccccccccCCCCCCEEeecCCCC
Q 001326 715 LCLSGCRGFALPP-LSTLSSLRTLTLSGCG-IIEISQ-DICCL-SSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNM 790 (1099)
Q Consensus 715 L~L~~~~~~~l~~-l~~l~~L~~L~Ls~~~-l~~l~~-~~~~l-~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~ 790 (1099)
|++++|.+..+|. ....++|++|++++|. +..++. .+..+ ++|+.|++++|+++.+|.. .+++|+.|++++|..
T Consensus 161 L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 161 LKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp EECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred EEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 6666666555544 1222677888888884 777654 47777 8899999999888888865 788899999888754
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=2.1e-18 Score=189.49 Aligned_cols=208 Identities=23% Similarity=0.269 Sum_probs=178.4
Q ss_pred CCCCCC-CCCCccEEEecCcCCcccCc-cccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcC
Q 001326 561 LTEFPH-ISGNVVELKLFNTPIEEVPS-SIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEK 638 (1099)
Q Consensus 561 l~~l~~-~~~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~ 638 (1099)
++.+|. ...+++.|++++|.+..++. .+..+++|++|++++|.+....+..+..+++|++|++++|......+..+..
T Consensus 19 l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 19 FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp CSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 344554 34568888888899998876 7889999999999999888777778999999999999999988887888999
Q ss_pred CCCCCEEEccCCCCcccCc-ccccCCCCcEEEccCCCCCC-cccccccCCCCCceeecCCCCCccCC-ccccCCCCCc--
Q 001326 639 MEPLEKLALDRSGIKELPS-SIENLEGLKELQLMCCSKLG-SLPESLGNLKSLVVLDANRSAILQLP-SSIADLNKLR-- 713 (1099)
Q Consensus 639 l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~-- 713 (1099)
+++|++|++++|.+..++. .+..+++|++|++++|.... .+|..+..+++|++|++++|.+..++ ..+..+++|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 9999999999999998766 68899999999999999876 46889999999999999999999875 4566666666
Q ss_pred --EEEccCCCCCCCCC-CCCCCCCCEEeccCCCCcccccc-cCCCCCCCEEEccCCCCc
Q 001326 714 --ELCLSGCRGFALPP-LSTLSSLRTLTLSGCGIIEISQD-ICCLSSLESLNLAENNFE 768 (1099)
Q Consensus 714 --~L~L~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~l~~~-~~~l~sL~~L~L~~n~l~ 768 (1099)
.|++++|.+..+++ .....+|++|++++|.+..+|.. +..+++|+.|+|++|.+.
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 89999999887765 44556899999999999998876 688999999999999876
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=3.5e-18 Score=190.59 Aligned_cols=195 Identities=25% Similarity=0.329 Sum_probs=146.4
Q ss_pred CCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEE
Q 001326 590 SLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQ 669 (1099)
Q Consensus 590 ~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 669 (1099)
.+++|+.|++++|.+.. ++ .+..+++|++|++++|......+ +..+++|++|++++|.++.++ .+..+++|+.|+
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 45566666666665433 33 46666677777777665544333 777777888888887777765 477788888888
Q ss_pred ccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCccccc
Q 001326 670 LMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQ 749 (1099)
Q Consensus 670 L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~ 749 (1099)
+++|...+ ++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.+..++++..+++|+.|++++|.+..++.
T Consensus 114 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 114 LTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp CTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh
Confidence 88887655 333 7788888888888888887765 77888888888888888887778888899999999998887765
Q ss_pred ccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCCCC
Q 001326 750 DICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQSLP 795 (1099)
Q Consensus 750 ~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp 795 (1099)
+..+++|+.|++++|.++.++ .+..+++|+.|++++|+. ...|
T Consensus 191 -l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i-~~~~ 233 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI-TNQP 233 (308)
T ss_dssp -GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE-ECCC
T ss_pred -hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee-ecCC
Confidence 778889999999999998887 478899999999998753 4444
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.4e-17 Score=182.04 Aligned_cols=189 Identities=24% Similarity=0.288 Sum_probs=155.1
Q ss_pred ccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCc-ccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCC
Q 001326 618 LRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPS-SIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANR 696 (1099)
Q Consensus 618 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~ 696 (1099)
++.++++++... .+|..+. ++|+.|++++|.++.++. .+.++++|++|++++|.+....+..+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 445555554433 3443332 578888888888887775 678889999999999887766566678999999999999
Q ss_pred CCCccCCc-cccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCcccccc-cCCCCCCCEEEccCCCCccccc
Q 001326 697 SAILQLPS-SIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQD-ICCLSSLESLNLAENNFESLPS 772 (1099)
Q Consensus 697 ~~i~~lp~-~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~~-~~~l~sL~~L~L~~n~l~~lp~ 772 (1099)
|.+..+|. .+..+++|++|++++|.+..+++ +..+++|++|++++|.+..++.. +..+++|+.|+|++|.++.+|.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 99998875 56889999999999999988876 78999999999999999998876 7899999999999999998876
Q ss_pred -cccCCCCCCEEeecCCCCCCCCCC----CCCCCCeeecccCc
Q 001326 773 -SISQLSCLRRLCLRNCNMLQSLPE----LPLGLRHLEASNCK 810 (1099)
Q Consensus 773 -~l~~l~~L~~L~L~~c~~l~~lp~----l~~sL~~L~i~~c~ 810 (1099)
.+..+++|+.|+|++|+ ++.+|. ..++|+.|++++++
T Consensus 175 ~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence 47889999999999985 455653 24689999999886
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=5.7e-18 Score=188.86 Aligned_cols=189 Identities=20% Similarity=0.308 Sum_probs=111.3
Q ss_pred ccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCcee
Q 001326 613 CKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVL 692 (1099)
Q Consensus 613 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 692 (1099)
..+++|++|++++|.... ++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|...+ ++ .+..+++|+.|
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEE
Confidence 345566666666654433 23 35556666666666666666655 6666666666666665433 22 45566666666
Q ss_pred ecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccc
Q 001326 693 DANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPS 772 (1099)
Q Consensus 693 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~ 772 (1099)
++++|.+..++. +..+++|++|++++|.+..++++..+++|+.|++++|.+..++. +..+++|+.|++++|.++.++.
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh
Confidence 666666665543 56666666666666666655556666666666666666665554 5666666666666666665553
Q ss_pred cccCCCCCCEEeecCCCCCCCCCC--CCCCCCeeecccCc
Q 001326 773 SISQLSCLRRLCLRNCNMLQSLPE--LPLGLRHLEASNCK 810 (1099)
Q Consensus 773 ~l~~l~~L~~L~L~~c~~l~~lp~--l~~sL~~L~i~~c~ 810 (1099)
+..+++|+.|++++|+. ..++. ..++|+.|++++|+
T Consensus 191 -l~~l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -GGGCTTCCEEECTTSCC-CBCGGGTTCTTCCEEEEEEEE
T ss_pred -hcCCCCCCEEEccCCcc-CccccccCCCCCCEEEccCCe
Confidence 55666666666666533 23331 23456666666554
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=4.1e-18 Score=182.73 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=141.9
Q ss_pred cccEEeccCCCCCCccchhhcCCCCCCEEEccCCC-CcccCc-ccccCCCCcEEEccC-CCCCCcccccccCCCCCceee
Q 001326 617 YLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSG-IKELPS-SIENLEGLKELQLMC-CSKLGSLPESLGNLKSLVVLD 693 (1099)
Q Consensus 617 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~-l~~lp~-~l~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~ 693 (1099)
+|++|++++|......+..+..+++|++|++++|. ++.++. .+.++++|++|++++ |......+..+.++++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 34444444444333333445556666666666664 655554 456677777777776 444444445677778888888
Q ss_pred cCCCCCccCCccccCCCCCc---EEEccCC-CCCCCCC--CCCCCCCC-EEeccCCCCcccccccCCCCCCCEEEccCC-
Q 001326 694 ANRSAILQLPSSIADLNKLR---ELCLSGC-RGFALPP--LSTLSSLR-TLTLSGCGIIEISQDICCLSSLESLNLAEN- 765 (1099)
Q Consensus 694 l~~~~i~~lp~~~~~l~~L~---~L~L~~~-~~~~l~~--l~~l~~L~-~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n- 765 (1099)
+++|.+..+|. +..+++|+ .|++++| .+..+++ +..+++|+ +|++++|.+..+|......++|+.|++++|
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK 190 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence 88888888776 77778887 9999999 8888776 88999999 999999999998887555589999999999
Q ss_pred CCcccc-ccccCC-CCCCEEeecCCCCCCCCCC-CCCCCCeeecccCcCc
Q 001326 766 NFESLP-SSISQL-SCLRRLCLRNCNMLQSLPE-LPLGLRHLEASNCKRL 812 (1099)
Q Consensus 766 ~l~~lp-~~l~~l-~~L~~L~L~~c~~l~~lp~-l~~sL~~L~i~~c~~L 812 (1099)
.++.+| ..+..+ ++|+.|++++|+ ++.+|. .+++|+.|++.++..|
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC---
T ss_pred CcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCccCC
Confidence 499886 457888 999999999965 556764 5789999999988654
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=7e-18 Score=188.57 Aligned_cols=198 Identities=20% Similarity=0.136 Sum_probs=160.4
Q ss_pred CCCCcEEEeCCccccccccccc--ccCccccEEeccCCCCCCccc----hhhcCCCCCCEEEccCCCCcccC-cccccCC
Q 001326 591 LPNLKILNLGFCKRLKRVSTGI--CKLKYLRCLYLLDCSDLESFP----EILEKMEPLEKLALDRSGIKELP-SSIENLE 663 (1099)
Q Consensus 591 l~~L~~L~L~~~~~~~~l~~~l--~~l~~L~~L~L~~~~~~~~~~----~~l~~l~~L~~L~L~~~~l~~lp-~~l~~l~ 663 (1099)
+++|++|++++|.+.+..|..+ ..+++|++|++++|......+ ..+..+++|++|++++|.+..++ ..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4668899999888888888777 888899999999988776544 34557889999999999998765 5778899
Q ss_pred CCcEEEccCCCCCCc--cc--ccccCCCCCceeecCCCCCccCCc----cccCCCCCcEEEccCCCCCCC-CC-CCCC--
Q 001326 664 GLKELQLMCCSKLGS--LP--ESLGNLKSLVVLDANRSAILQLPS----SIADLNKLRELCLSGCRGFAL-PP-LSTL-- 731 (1099)
Q Consensus 664 ~L~~L~L~~~~~l~~--lp--~~l~~l~~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~L~~~~~~~l-~~-l~~l-- 731 (1099)
+|++|++++|...+. ++ ..++.+++|++|++++|.++.++. .+..+++|++|+|++|.+... |. +..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 999999999987642 22 234688999999999999987655 257789999999999998776 32 4444
Q ss_pred -CCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCC
Q 001326 732 -SSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNML 791 (1099)
Q Consensus 732 -~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l 791 (1099)
++|++|++++|.+..+|..+. ++|+.|+|++|+++.+|. +..+++|+.|++++|+..
T Consensus 250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 799999999999999888764 899999999999998875 678899999999998653
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=1.8e-17 Score=181.37 Aligned_cols=205 Identities=21% Similarity=0.235 Sum_probs=149.2
Q ss_pred cCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcc-cccCCCCcE
Q 001326 589 ESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSS-IENLEGLKE 667 (1099)
Q Consensus 589 ~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~ 667 (1099)
..+++|+.|++++|.+.. + ..+..+++|++|++++|.... + ..+..+++|++|++++|.++.++.. +.++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 345556666666655332 1 235566666666666665443 2 3566777777777777777766554 577788888
Q ss_pred EEccCCCCCCcccccccCCCCCceeecCCCCCccCCc-cccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCC
Q 001326 668 LQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPS-SIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGI 744 (1099)
Q Consensus 668 L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l 744 (1099)
|++++|...+..+..+..+++|++|++++|.+..+|. .+..+++|+.|++++|.+..+++ +..+++|++|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 8888887776666667788888888888888887765 35778888888888888877776 67888999999999998
Q ss_pred cccccc-cCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCCCCCCCCCCCe
Q 001326 745 IEISQD-ICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQSLPELPLGLRH 803 (1099)
Q Consensus 745 ~~l~~~-~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~ 803 (1099)
..++.. +..+++|+.|++++|.+. ..+++|+.|+++.|.....+|..+.++..
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 886655 688999999999999765 34667888888888887788876655544
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=6.1e-17 Score=184.17 Aligned_cols=236 Identities=25% Similarity=0.301 Sum_probs=168.3
Q ss_pred eEEEeecCCCCcCCCCCCCCCceEEECCCCCccccccc-ccccCCccEEeccCCCCCCcCCC--CCCCCCccEEEee-CC
Q 001326 436 RYLHWHECPLKSLPSNFDLENLIELDLPYSKVEQLWEG-EKEAFKLKSIDLHQSHNLTRIPK--QSEAPNLERINLW-NC 511 (1099)
Q Consensus 436 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~~~--~~~l~~L~~L~L~-~~ 511 (1099)
+.++.+++.++++|..+ ++++++|+|++|+|+.+|.+ +.++++|++|+|++|.+...+|. |.++++|+++... +|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 46778888899999876 57899999999999999875 68899999999999988777665 6788888765544 44
Q ss_pred CCCCccCccccCCCCCCEEEcCCCCCcccCCCCC--CCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCcccc
Q 001326 512 KNLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNI--HFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIE 589 (1099)
Q Consensus 512 ~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~ 589 (1099)
......|..|..+++|++|++++|. +..+|... ....+..+++.++..+..++.. .+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~-------------------~f~ 150 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-------------------SFV 150 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTT-------------------SST
T ss_pred cccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhcccccccccccc-------------------chh
Confidence 4444446678999999999999874 44444433 4455666666665555443321 122
Q ss_pred CC-CCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccc-hhhcCCCCCCEEEccCCCCcccCcccccCCCCcE
Q 001326 590 SL-PNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFP-EILEKMEPLEKLALDRSGIKELPSSIENLEGLKE 667 (1099)
Q Consensus 590 ~l-~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~ 667 (1099)
.+ ..++.|++++|.+. .++.......+|++|.+.++...+.+| ..|..+++|+.|++++|+++.+|.. .+.+|+.
T Consensus 151 ~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~ 227 (350)
T 4ay9_X 151 GLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKK 227 (350)
T ss_dssp TSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCE
T ss_pred hcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchH
Confidence 32 34666777766654 344444455667777777666666666 4578888999999999999988864 4778888
Q ss_pred EEccCCCCCCcccccccCCCCCceeecCC
Q 001326 668 LQLMCCSKLGSLPESLGNLKSLVVLDANR 696 (1099)
Q Consensus 668 L~L~~~~~l~~lp~~l~~l~~L~~L~l~~ 696 (1099)
|.+.++..++.+|. +..+++|+.+++.+
T Consensus 228 L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 228 LRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp EECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred hhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 88888887777774 66777777777654
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=4.7e-17 Score=178.08 Aligned_cols=216 Identities=19% Similarity=0.189 Sum_probs=166.6
Q ss_pred CCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccC
Q 001326 593 NLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMC 672 (1099)
Q Consensus 593 ~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~ 672 (1099)
++..+++..+..... ..+..+++|+.|++.+|.... + ..+..+++|++|++++|.++.++ .+..+++|++|++++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC
Confidence 344445555443332 235678889999999887543 2 34788999999999999988865 688899999999999
Q ss_pred CCCCCcccccccCCCCCceeecCCCCCccCCcc-ccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCccccc
Q 001326 673 CSKLGSLPESLGNLKSLVVLDANRSAILQLPSS-IADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQ 749 (1099)
Q Consensus 673 ~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~ 749 (1099)
|...+..+..+..+++|++|++++|.+..++.. +..+++|++|++++|.+..+++ +..+++|+.|++++|.+..++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 988877777788999999999999999887654 7889999999999999888776 6788999999999999988766
Q ss_pred c-cCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCCCCCCCCCCCCCCeeecccCcCcccCCC
Q 001326 750 D-ICCLSSLESLNLAENNFESLPSS-ISQLSCLRRLCLRNCNMLQSLPELPLGLRHLEASNCKRLQSFPE 817 (1099)
Q Consensus 750 ~-~~~l~sL~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~i~~c~~L~~l~~ 817 (1099)
. +..+++|+.|++++|.++.+|.. +..+++|+.|++++|+..... ++|+.|+++.+..-..+|.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~----~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC----PGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT----TTTHHHHHHHHHTGGGBBC
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC----cHHHHHHHHHHhCCCcccC
Confidence 5 68889999999999999877654 678999999999998655433 3556666655544444443
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=2.4e-18 Score=194.92 Aligned_cols=196 Identities=16% Similarity=0.122 Sum_probs=97.4
Q ss_pred ceEEECCCCCccccccccccc--CCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCCCCc-cCccccCCCCCCEEEcC
Q 001326 457 LIELDLPYSKVEQLWEGEKEA--FKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKNLLY-IPSHIQNFNNLSMLSLR 533 (1099)
Q Consensus 457 L~~L~L~~n~i~~l~~~~~~l--~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~L~ 533 (1099)
++.|+++++.+. +..+..+ .+++.|++++|.+....+.+..+++|++|++++|..... ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 455666665554 2333444 566777777666555555555566666666666653333 55555666666666666
Q ss_pred CCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCccccCCCCCcEEEeCCcc-ccc-ccccc
Q 001326 534 DCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCK-RLK-RVSTG 611 (1099)
Q Consensus 534 ~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~-~~~-~l~~~ 611 (1099)
+|.... ..|..+..+++|++|++++|. +.. .++..
T Consensus 127 ~~~l~~-------------------------------------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~ 163 (336)
T 2ast_B 127 GLRLSD-------------------------------------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163 (336)
T ss_dssp TCBCCH-------------------------------------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred CcccCH-------------------------------------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHH
Confidence 542111 122234445555555555552 222 13333
Q ss_pred cccCccccEEeccCC-CCCCc-cchhhcCCC-CCCEEEccCCC--C--cccCcccccCCCCcEEEccCCC-CCCcccccc
Q 001326 612 ICKLKYLRCLYLLDC-SDLES-FPEILEKME-PLEKLALDRSG--I--KELPSSIENLEGLKELQLMCCS-KLGSLPESL 683 (1099)
Q Consensus 612 l~~l~~L~~L~L~~~-~~~~~-~~~~l~~l~-~L~~L~L~~~~--l--~~lp~~l~~l~~L~~L~L~~~~-~l~~lp~~l 683 (1099)
+..+++|++|++++| ..... ++..+..++ +|++|++++|. + ..+|..+..+++|+.|++++|. .....+..+
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence 444555555555555 22221 344444555 55555555552 2 2344444455555555555555 233334444
Q ss_pred cCCCCCceeecCCC
Q 001326 684 GNLKSLVVLDANRS 697 (1099)
Q Consensus 684 ~~l~~L~~L~l~~~ 697 (1099)
..+++|+.|++++|
T Consensus 244 ~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 244 FQLNYLQHLSLSRC 257 (336)
T ss_dssp GGCTTCCEEECTTC
T ss_pred hCCCCCCEeeCCCC
Confidence 44445555555444
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=1.3e-18 Score=201.23 Aligned_cols=127 Identities=22% Similarity=0.206 Sum_probs=57.9
Q ss_pred CCCcEEEccCCCCC-Cccc---ccccCCCCCceeecCCCCCc------cCCccccCCCCCcEEEccCCCCC-----CCCC
Q 001326 663 EGLKELQLMCCSKL-GSLP---ESLGNLKSLVVLDANRSAIL------QLPSSIADLNKLRELCLSGCRGF-----ALPP 727 (1099)
Q Consensus 663 ~~L~~L~L~~~~~l-~~lp---~~l~~l~~L~~L~l~~~~i~------~lp~~~~~l~~L~~L~L~~~~~~-----~l~~ 727 (1099)
++|++|++++|.+. ..++ ..+..+++|+.|++++|.+. -.|..+..+++|+.|+|++|.+. .++.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 44445555444443 2222 23334444444454444444 11224444445555555554431 1221
Q ss_pred -CCCCCCCCEEeccCCCCcc-----ccccc--CCCCCCCEEEccCCCCcc-----ccccc-cCCCCCCEEeecCCC
Q 001326 728 -LSTLSSLRTLTLSGCGIIE-----ISQDI--CCLSSLESLNLAENNFES-----LPSSI-SQLSCLRRLCLRNCN 789 (1099)
Q Consensus 728 -l~~l~~L~~L~Ls~~~l~~-----l~~~~--~~l~sL~~L~L~~n~l~~-----lp~~l-~~l~~L~~L~L~~c~ 789 (1099)
+..+++|++|+|++|.+.. ++..+ +.+++|+.|+|++|.++. +|..+ .++++|+.|++++|+
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 3444555555555555542 23333 225555555555555554 55444 335555555555554
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=7e-19 Score=203.40 Aligned_cols=233 Identities=16% Similarity=0.106 Sum_probs=188.7
Q ss_pred CcCCcccCccccCCCCCcEEEeCCcccccccc----cccccCccccEEeccCCCCC---Cccchh-------hcCCCCCC
Q 001326 578 NTPIEEVPSSIESLPNLKILNLGFCKRLKRVS----TGICKLKYLRCLYLLDCSDL---ESFPEI-------LEKMEPLE 643 (1099)
Q Consensus 578 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~----~~l~~l~~L~~L~L~~~~~~---~~~~~~-------l~~l~~L~ 643 (1099)
...+..++..+..+++|+.|+|++|.+....+ ..+..+++|++|++++|... +.+|.. +..+++|+
T Consensus 18 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 18 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp SHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 34555677778889999999999998876643 44778999999999997443 234443 47899999
Q ss_pred EEEccCCCCcc-----cCcccccCCCCcEEEccCCCCCCccc----ccccCC---------CCCceeecCCCCCc--cCC
Q 001326 644 KLALDRSGIKE-----LPSSIENLEGLKELQLMCCSKLGSLP----ESLGNL---------KSLVVLDANRSAIL--QLP 703 (1099)
Q Consensus 644 ~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~~~~l~~lp----~~l~~l---------~~L~~L~l~~~~i~--~lp 703 (1099)
+|+|++|.++. +|..+..+++|++|++++|.+....+ ..+..+ ++|++|++++|.+. .++
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 99999999986 78889999999999999999764333 334444 89999999999997 344
Q ss_pred ---ccccCCCCCcEEEccCCCCC------CCC-CCCCCCCCCEEeccCCCCc-----ccccccCCCCCCCEEEccCCCCc
Q 001326 704 ---SSIADLNKLRELCLSGCRGF------ALP-PLSTLSSLRTLTLSGCGII-----EISQDICCLSSLESLNLAENNFE 768 (1099)
Q Consensus 704 ---~~~~~l~~L~~L~L~~~~~~------~l~-~l~~l~~L~~L~Ls~~~l~-----~l~~~~~~l~sL~~L~L~~n~l~ 768 (1099)
..+..+++|++|++++|.+. ..+ .+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.++
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 46778999999999999976 344 6788999999999999994 47888899999999999999998
Q ss_pred c-----cccccc--CCCCCCEEeecCCCCCC----CCCCC----CCCCCeeecccCc
Q 001326 769 S-----LPSSIS--QLSCLRRLCLRNCNMLQ----SLPEL----PLGLRHLEASNCK 810 (1099)
Q Consensus 769 ~-----lp~~l~--~l~~L~~L~L~~c~~l~----~lp~l----~~sL~~L~i~~c~ 810 (1099)
. +|..+. .+++|+.|+|++|..-. .+|.. +++|+.|++++|+
T Consensus 258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred hhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 4 467774 49999999999987655 36642 4889999999886
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=183.31 Aligned_cols=153 Identities=23% Similarity=0.224 Sum_probs=78.3
Q ss_pred CCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCc--cc--hhhcCCCCCCEEEccCCCCcccCcc----ccc
Q 001326 590 SLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLES--FP--EILEKMEPLEKLALDRSGIKELPSS----IEN 661 (1099)
Q Consensus 590 ~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~--~~--~~l~~l~~L~~L~L~~~~l~~lp~~----l~~ 661 (1099)
.+++|++|++++|.+....+..++.+++|++|++++|...+. ++ ..+..+++|++|++++|.++.++.. +..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 344555555555554444444455555555555555543321 11 1224556666666666666544432 345
Q ss_pred CCCCcEEEccCCCCCCcccccccCC---CCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEe
Q 001326 662 LEGLKELQLMCCSKLGSLPESLGNL---KSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLT 738 (1099)
Q Consensus 662 l~~L~~L~L~~~~~l~~lp~~l~~l---~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~ 738 (1099)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.++.+|..+. ++|+.|+|++|.+..+|.+..+++|+.|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLT 300 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence 5666666666666555555544444 466666666666665555442 45555555555544444444444444444
Q ss_pred ccCCCC
Q 001326 739 LSGCGI 744 (1099)
Q Consensus 739 Ls~~~l 744 (1099)
+++|.+
T Consensus 301 L~~N~l 306 (310)
T 4glp_A 301 LDGNPF 306 (310)
T ss_dssp CSSTTT
T ss_pred CcCCCC
Confidence 444443
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=2.8e-18 Score=194.38 Aligned_cols=226 Identities=16% Similarity=0.172 Sum_probs=149.2
Q ss_pred CccEEEecCcCCcccCccccCCCCCcEEEeCCcccccc-cccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEcc
Q 001326 570 NVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKR-VSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALD 648 (1099)
Q Consensus 570 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~-l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 648 (1099)
+++.|++.++.+...+..+..+++|++|++++|.+... ++..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 45555666666666666667788888888888876654 66677788888888888887666677777888888888888
Q ss_pred CC-CCc--ccCcccccCCCCcEEEccCC-CCCCc-ccccccCCC-CCceeecCCCC--C--ccCCccccCCCCCcEEEcc
Q 001326 649 RS-GIK--ELPSSIENLEGLKELQLMCC-SKLGS-LPESLGNLK-SLVVLDANRSA--I--LQLPSSIADLNKLRELCLS 718 (1099)
Q Consensus 649 ~~-~l~--~lp~~l~~l~~L~~L~L~~~-~~l~~-lp~~l~~l~-~L~~L~l~~~~--i--~~lp~~~~~l~~L~~L~L~ 718 (1099)
+| .++ .++..+.++++|++|++++| ..... ++..+..++ +|++|++++|. + ..+|..+..+++|+.|+++
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 88 566 36666777888888888888 54432 566677777 88888888874 3 3456666777788888887
Q ss_pred CCCC-C--CCCCCCCCCCCCEEeccCCC-Ccc-cccccCCCCCCCEEEccCCCCccccccccCC-CCCCEEeecCCCCCC
Q 001326 719 GCRG-F--ALPPLSTLSSLRTLTLSGCG-IIE-ISQDICCLSSLESLNLAENNFESLPSSISQL-SCLRRLCLRNCNMLQ 792 (1099)
Q Consensus 719 ~~~~-~--~l~~l~~l~~L~~L~Ls~~~-l~~-l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l-~~L~~L~L~~c~~l~ 792 (1099)
+|.. . .++.+..+++|++|++++|. +.. ....+..+++|+.|++++| ++. ..+..+ .+|+.|++++|+...
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCC
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCcc
Confidence 7773 2 23346666777777777774 221 1123556777777777777 321 112222 124445566655555
Q ss_pred CCCCCC
Q 001326 793 SLPELP 798 (1099)
Q Consensus 793 ~lp~l~ 798 (1099)
..|...
T Consensus 308 ~~~~~~ 313 (336)
T 2ast_B 308 IARPTI 313 (336)
T ss_dssp TTCSSC
T ss_pred ccCCcc
Confidence 555443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=1.5e-16 Score=180.85 Aligned_cols=224 Identities=21% Similarity=0.254 Sum_probs=122.8
Q ss_pred CCCCCCC-CCCCccEEEecCcCCcccCc-cccCCCCCcEEEeCCccccccccc-ccccCccccEEeccC-CCCCCccchh
Q 001326 560 NLTEFPH-ISGNVVELKLFNTPIEEVPS-SIESLPNLKILNLGFCKRLKRVST-GICKLKYLRCLYLLD-CSDLESFPEI 635 (1099)
Q Consensus 560 ~l~~l~~-~~~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~l~~-~l~~l~~L~~L~L~~-~~~~~~~~~~ 635 (1099)
.++++|. +..+++.|+|++|.++.+|. .+.++++|++|+|++|.+.+.+|. .+.++++|+++.+.+ |......|..
T Consensus 20 ~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 20 KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp TCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 4555554 33456666666666666654 355666666666666665554443 345555555433332 3333333445
Q ss_pred hcCCCCCCEEEccCCCCcccCc-ccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCC-CCCc
Q 001326 636 LEKMEPLEKLALDRSGIKELPS-SIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADL-NKLR 713 (1099)
Q Consensus 636 l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l-~~L~ 713 (1099)
|..+++|++|++++|.+..+|. .+....++..|++.++..+..++. ..+..+ ..|+
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~----------------------~~f~~~~~~l~ 157 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER----------------------NSFVGLSFESV 157 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT----------------------TSSTTSBSSCE
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc----------------------cchhhcchhhh
Confidence 5555555555555555554443 222334444455444433333322 122222 2355
Q ss_pred EEEccCCCCCCCCC-CCCCCCCCEEeccC-CCCcccccc-cCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCC
Q 001326 714 ELCLSGCRGFALPP-LSTLSSLRTLTLSG-CGIIEISQD-ICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNM 790 (1099)
Q Consensus 714 ~L~L~~~~~~~l~~-l~~l~~L~~L~Ls~-~~l~~l~~~-~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~ 790 (1099)
.|++++|.+..++. .....+|++|++++ |.+..+|.. +..+++|+.|+|++|+|+.+|.. .+.+|+.|.+.+|+.
T Consensus 158 ~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYN 235 (350)
T ss_dssp EEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTT
T ss_pred hhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCC
Confidence 55555555554443 23345566666654 455566654 57777888888888888877753 366777777777777
Q ss_pred CCCCCCC--CCCCCeeecc
Q 001326 791 LQSLPEL--PLGLRHLEAS 807 (1099)
Q Consensus 791 l~~lp~l--~~sL~~L~i~ 807 (1099)
++.+|.+ +++|+.+++.
T Consensus 236 l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 236 LKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp CCCCCCTTTCCSCCEEECS
T ss_pred cCcCCCchhCcChhhCcCC
Confidence 8877742 3566666654
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=7.1e-16 Score=166.55 Aligned_cols=173 Identities=23% Similarity=0.289 Sum_probs=107.7
Q ss_pred ccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCC
Q 001326 571 VVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRS 650 (1099)
Q Consensus 571 L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~ 650 (1099)
.+.++++++.+..+|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4566677777777776554 56777777777766655555566666666666665555544444555555555555555
Q ss_pred CCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCcc-ccCCCCCcEEEccCCCCCCCCC--
Q 001326 651 GIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSS-IADLNKLRELCLSGCRGFALPP-- 727 (1099)
Q Consensus 651 ~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~l~~-- 727 (1099)
.++.+| +..+..+++|++|++++|.+..+|.. +..+++|++|+|++|.+..+++
T Consensus 94 ~l~~~~-----------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 150 (251)
T 3m19_A 94 QLASLP-----------------------LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150 (251)
T ss_dssp CCCCCC-----------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cccccC-----------------------hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence 554443 34445555555555555555555443 4556666666666666665554
Q ss_pred CCCCCCCCEEeccCCCCccccc-ccCCCCCCCEEEccCCCCc
Q 001326 728 LSTLSSLRTLTLSGCGIIEISQ-DICCLSSLESLNLAENNFE 768 (1099)
Q Consensus 728 l~~l~~L~~L~Ls~~~l~~l~~-~~~~l~sL~~L~L~~n~l~ 768 (1099)
+..+++|++|+|++|.+..++. .+..+++|+.|+|++|.+.
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 5667777777777777776655 4677788888888888776
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=3.2e-16 Score=187.46 Aligned_cols=161 Identities=21% Similarity=0.223 Sum_probs=83.6
Q ss_pred ccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecC
Q 001326 616 KYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDAN 695 (1099)
Q Consensus 616 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~ 695 (1099)
++|+.|++++|... .+| ..+++|+.|++++|.++.+|. +.+ +|+.|++++|.+.+ +|. .+++|+.|+++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINAD 148 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCC
Confidence 34444444444333 233 234455555555555555554 332 55555555554443 333 34555555555
Q ss_pred CCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCC-------CEEEccCCCCc
Q 001326 696 RSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSL-------ESLNLAENNFE 768 (1099)
Q Consensus 696 ~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL-------~~L~L~~n~l~ 768 (1099)
+|.++.+|. .+++|+.|+|++|.+..+|.+. ++|+.|+|++|.++.+|. +.. +| +.|+|++|.|+
T Consensus 149 ~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 149 NNQLTMLPE---LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC
T ss_pred CCccCcCCC---cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce
Confidence 555555554 3455556666655555555532 556666666666655555 332 44 66666666666
Q ss_pred cccccccCCCCCCEEeecCCCCCCCCC
Q 001326 769 SLPSSISQLSCLRRLCLRNCNMLQSLP 795 (1099)
Q Consensus 769 ~lp~~l~~l~~L~~L~L~~c~~l~~lp 795 (1099)
.+|..+..+++|+.|+|++|+....+|
T Consensus 221 ~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 221 HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 666655556666666666655444433
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=4.4e-18 Score=194.64 Aligned_cols=133 Identities=14% Similarity=0.088 Sum_probs=60.6
Q ss_pred CCCCEEEccCCCCc-----ccCcccccCC-CCcEEEccCCCCCCccccc----ccCC-CCCceeecCCCCCcc-----CC
Q 001326 640 EPLEKLALDRSGIK-----ELPSSIENLE-GLKELQLMCCSKLGSLPES----LGNL-KSLVVLDANRSAILQ-----LP 703 (1099)
Q Consensus 640 ~~L~~L~L~~~~l~-----~lp~~l~~l~-~L~~L~L~~~~~l~~lp~~----l~~l-~~L~~L~l~~~~i~~-----lp 703 (1099)
++|++|++++|.++ .++..+..++ +|++|++++|.+....+.. +..+ ++|++|++++|.+.. ++
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~ 217 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA 217 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH
Confidence 35555555555554 2333333443 5555555555544433322 2223 355555555555554 33
Q ss_pred ccccC-CCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCc--------cccccc
Q 001326 704 SSIAD-LNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFE--------SLPSSI 774 (1099)
Q Consensus 704 ~~~~~-l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~--------~lp~~l 774 (1099)
..+.. .++|++|+|++|.+...+. ..+...+..+++|+.|+|++|.+. .++..+
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~l~~~~~-----------------~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~ 280 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNCLHGPSL-----------------ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF 280 (362)
T ss_dssp HHHHHSCTTCCEEECCSSCCCCCCH-----------------HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS
T ss_pred HHHhcCCCCceEEECcCCCCCcHHH-----------------HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh
Confidence 33333 2244444444444333221 001122344555555555555422 233445
Q ss_pred cCCCCCCEEeecCCC
Q 001326 775 SQLSCLRRLCLRNCN 789 (1099)
Q Consensus 775 ~~l~~L~~L~L~~c~ 789 (1099)
..+++|+.|++++|+
T Consensus 281 ~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 281 PNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEEEECTTSCB
T ss_pred ccCCceEEEecCCCc
Confidence 556666666666654
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=4.1e-16 Score=186.55 Aligned_cols=186 Identities=22% Similarity=0.246 Sum_probs=144.1
Q ss_pred CccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccC
Q 001326 570 NVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDR 649 (1099)
Q Consensus 570 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 649 (1099)
+++.|+++++.+..+|..+. ++|++|+|++|.+. .+| ..+++|+.|++++|.... +|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 45566666667777776553 67888888877765 455 446778888888876655 555 544 888888888
Q ss_pred CCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCC
Q 001326 650 SGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLS 729 (1099)
Q Consensus 650 ~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~ 729 (1099)
|.++.+|. .+++|+.|++++|.+.+ +|. .+++|+.|++++|.++.+|. +. ++|+.|+|++|.+..+|.+.
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~~~ 199 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPAVP 199 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCCCC
T ss_pred CcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhhHH
Confidence 88888887 67888999998888665 555 56889999999999888888 55 89999999999988888743
Q ss_pred CCCCC-------CEEeccCCCCcccccccCCCCCCCEEEccCCCCc-cccccccCC
Q 001326 730 TLSSL-------RTLTLSGCGIIEISQDICCLSSLESLNLAENNFE-SLPSSISQL 777 (1099)
Q Consensus 730 ~l~~L-------~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~-~lp~~l~~l 777 (1099)
. +| +.|+|++|.++.+|..+..+++|+.|+|++|.++ .+|..+..+
T Consensus 200 ~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 200 V--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred H--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 3 77 9999999999999998888999999999999998 566665554
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=5.5e-16 Score=171.17 Aligned_cols=170 Identities=24% Similarity=0.281 Sum_probs=124.6
Q ss_pred ccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCcee
Q 001326 613 CKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVL 692 (1099)
Q Consensus 613 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 692 (1099)
..+++|+.|++++|..... + .+..+++|+.|++++|.++.++. +..+++|+.|++++|.... ++ .+..+++|+.|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 3455666666666544332 2 35667777777777777776665 6777777777777776544 33 37777778888
Q ss_pred ecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccc
Q 001326 693 DANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPS 772 (1099)
Q Consensus 693 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~ 772 (1099)
++++|.+..+ ..+..+++|+.|++++|.+..++.+..+++|+.|++++|.+..++. +..+++|+.|++++|.++.+|.
T Consensus 118 ~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~ 195 (291)
T 1h6t_A 118 SLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA 195 (291)
T ss_dssp ECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred ECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh
Confidence 8888777776 3567788888888888887777777888888888888888887765 7888888888888888888874
Q ss_pred cccCCCCCCEEeecCCCC
Q 001326 773 SISQLSCLRRLCLRNCNM 790 (1099)
Q Consensus 773 ~l~~l~~L~~L~L~~c~~ 790 (1099)
+..+++|+.|++++|+.
T Consensus 196 -l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 196 -LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp -GTTCTTCSEEEEEEEEE
T ss_pred -hccCCCCCEEECcCCcc
Confidence 78888888888888753
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=2.5e-15 Score=162.27 Aligned_cols=173 Identities=23% Similarity=0.288 Sum_probs=143.0
Q ss_pred cccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCc-ccccCCCCcEEEccCCCCCCcccccccCCCCCceeecC
Q 001326 617 YLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPS-SIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDAN 695 (1099)
Q Consensus 617 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~ 695 (1099)
..+.++++++.. ..+|..+. ++|+.|++++|.++.++. .+.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l-~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSL-DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCC-SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCc-cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 344555554433 23443332 578888888888876654 57888889999999988888777788999999999999
Q ss_pred CCCCccCCc-cccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCccccc-ccCCCCCCCEEEccCCCCcccc
Q 001326 696 RSAILQLPS-SIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQ-DICCLSSLESLNLAENNFESLP 771 (1099)
Q Consensus 696 ~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~-~~~~l~sL~~L~L~~n~l~~lp 771 (1099)
+|.+..+|. .+..+++|++|+|++|.+..+++ +..+++|++|+|++|.+..++. .+..+++|+.|+|++|.++.+|
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 999998864 67899999999999999988887 7889999999999999999887 5899999999999999999887
Q ss_pred c-cccCCCCCCEEeecCCCCCC
Q 001326 772 S-SISQLSCLRRLCLRNCNMLQ 792 (1099)
Q Consensus 772 ~-~l~~l~~L~~L~L~~c~~l~ 792 (1099)
. .+..+++|+.|+|++|+...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCT
T ss_pred HHHHhCCCCCCEEEeeCCceeC
Confidence 5 68889999999999987543
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=5.4e-17 Score=185.59 Aligned_cols=237 Identities=15% Similarity=0.071 Sum_probs=175.5
Q ss_pred EEecCcCCccc-CccccCCCCCcEEEeCCcccccccc----cccccCc-cccEEeccCCCCCCccchhhcCC-----CCC
Q 001326 574 LKLFNTPIEEV-PSSIESLPNLKILNLGFCKRLKRVS----TGICKLK-YLRCLYLLDCSDLESFPEILEKM-----EPL 642 (1099)
Q Consensus 574 L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~l~----~~l~~l~-~L~~L~L~~~~~~~~~~~~l~~l-----~~L 642 (1099)
++++.+.+... |..+...++|++|++++|.+....+ ..+..++ +|++|++++|......+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 45666677644 4444555669999999998776665 6677888 89999999998777666655554 899
Q ss_pred CEEEccCCCCcccCcc-----cccC-CCCcEEEccCCCCCCcccccc----cC-CCCCceeecCCCCCcc-----CCccc
Q 001326 643 EKLALDRSGIKELPSS-----IENL-EGLKELQLMCCSKLGSLPESL----GN-LKSLVVLDANRSAILQ-----LPSSI 706 (1099)
Q Consensus 643 ~~L~L~~~~l~~lp~~-----l~~l-~~L~~L~L~~~~~l~~lp~~l----~~-l~~L~~L~l~~~~i~~-----lp~~~ 706 (1099)
++|++++|.++..+.. +..+ ++|++|++++|.+....+..+ .. .++|++|++++|.+.. ++..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 9999999998855432 4555 899999999999766555443 34 3699999999999883 34555
Q ss_pred cCCC-CCcEEEccCCCCCCCCC------CCCC-CCCCEEeccCCCCcc-----cccccCC-CCCCCEEEccCCCCcccc-
Q 001326 707 ADLN-KLRELCLSGCRGFALPP------LSTL-SSLRTLTLSGCGIIE-----ISQDICC-LSSLESLNLAENNFESLP- 771 (1099)
Q Consensus 707 ~~l~-~L~~L~L~~~~~~~l~~------l~~l-~~L~~L~Ls~~~l~~-----l~~~~~~-l~sL~~L~L~~n~l~~lp- 771 (1099)
..++ +|++|+|++|.+..... +..+ ++|++|+|++|.+.. ++..+.. .++|++|+|++|.++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 6666 99999999998765543 3445 599999999999986 6666655 469999999999998543
Q ss_pred ----ccccCCCCCCEEeecCCCC-------CCCCCC---CCCCCCeeecccCc
Q 001326 772 ----SSISQLSCLRRLCLRNCNM-------LQSLPE---LPLGLRHLEASNCK 810 (1099)
Q Consensus 772 ----~~l~~l~~L~~L~L~~c~~-------l~~lp~---l~~sL~~L~i~~c~ 810 (1099)
..+..+++|+.|++++|.. +..++. ..++|+.|++++++
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 4467889999999999861 111222 23567778887765
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=1.1e-15 Score=168.69 Aligned_cols=174 Identities=25% Similarity=0.292 Sum_probs=143.4
Q ss_pred cCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEE
Q 001326 589 ESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKEL 668 (1099)
Q Consensus 589 ~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L 668 (1099)
..+++|+.|++++|.+... + .+..+++|+.|++++|......+ +..+++|+.|++++|.++.+|. +..+++|+.|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 4567778888887765443 2 37777888888888877665443 7888888888888888888765 8888999999
Q ss_pred EccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccc
Q 001326 669 QLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEIS 748 (1099)
Q Consensus 669 ~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~ 748 (1099)
++++|...+. ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..++++..+++|+.|++++|.+..++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCCh
Confidence 9998876653 4578889999999999998887 678889999999999999888888999999999999999999887
Q ss_pred cccCCCCCCCEEEccCCCCcccc
Q 001326 749 QDICCLSSLESLNLAENNFESLP 771 (1099)
Q Consensus 749 ~~~~~l~sL~~L~L~~n~l~~lp 771 (1099)
. +..+++|+.|++++|.++..|
T Consensus 195 ~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 195 A-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp G-GTTCTTCSEEEEEEEEEECCC
T ss_pred h-hccCCCCCEEECcCCcccCCc
Confidence 5 889999999999999887665
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=6.8e-16 Score=186.84 Aligned_cols=169 Identities=24% Similarity=0.283 Sum_probs=94.1
Q ss_pred cCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceee
Q 001326 614 KLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLD 693 (1099)
Q Consensus 614 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 693 (1099)
.+++|+.|++++|.... ++ .+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.+.. +| .+..+++|+.|+
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 44445555555444322 22 34555555555555555555544 5555555555555554433 22 455555666666
Q ss_pred cCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCcccccc
Q 001326 694 ANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSS 773 (1099)
Q Consensus 694 l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~ 773 (1099)
+++|.+..++ .+..+++|+.|+|++|.+..++.+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.++.+| .
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~ 192 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-A 192 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-G
T ss_pred ecCCCCCCCc-cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-H
Confidence 6666555543 355566666666666665555555566666666666666665544 556666666666666666554 4
Q ss_pred ccCCCCCCEEeecCCCC
Q 001326 774 ISQLSCLRRLCLRNCNM 790 (1099)
Q Consensus 774 l~~l~~L~~L~L~~c~~ 790 (1099)
+..+++|+.|+|++|+.
T Consensus 193 l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQEC 209 (605)
T ss_dssp GTTCTTCSEEECCSEEE
T ss_pred HccCCCCCEEEccCCcC
Confidence 55666666666666543
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=1.5e-15 Score=164.94 Aligned_cols=167 Identities=22% Similarity=0.215 Sum_probs=124.5
Q ss_pred CccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeec
Q 001326 615 LKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDA 694 (1099)
Q Consensus 615 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l 694 (1099)
+.++..+.++++.... ++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 4445555555554433 22 4566777888888888887777 57778888888888887655443 778888888888
Q ss_pred CCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccccc
Q 001326 695 NRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSI 774 (1099)
Q Consensus 695 ~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l 774 (1099)
++|.+..+|.... ++|+.|++++|.+..++.+..+++|+.|++++|.+..++ .+..+++|+.|++++|.++.+ ..+
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l 168 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGL 168 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTS
T ss_pred CCCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHh
Confidence 8888887765433 788888888888877777888888888888888888775 577788888888888888877 567
Q ss_pred cCCCCCCEEeecCCCC
Q 001326 775 SQLSCLRRLCLRNCNM 790 (1099)
Q Consensus 775 ~~l~~L~~L~L~~c~~ 790 (1099)
..+++|+.|++++|+.
T Consensus 169 ~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTCCCCCEEEEEEEEE
T ss_pred ccCCCCCEEeCCCCcc
Confidence 7888888888888653
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=4.9e-15 Score=179.35 Aligned_cols=175 Identities=26% Similarity=0.307 Sum_probs=139.1
Q ss_pred ccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcE
Q 001326 588 IESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKE 667 (1099)
Q Consensus 588 i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~ 667 (1099)
+..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|......+ +..+++|+.|+|++|.+..+| .+..+++|+.
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 3456777778887776543 33 47778888888888877655444 778888888888888888776 5788888888
Q ss_pred EEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCccc
Q 001326 668 LQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEI 747 (1099)
Q Consensus 668 L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l 747 (1099)
|+|++|.+.. + ..+..+++|+.|++++|.+..+ ..+..+++|+.|+|++|.+..++++..+++|+.|+|++|.+..+
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC
T ss_pred EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC
Confidence 8888887665 3 3578888888888888888887 67888899999999999888877788889999999999988887
Q ss_pred ccccCCCCCCCEEEccCCCCcccc
Q 001326 748 SQDICCLSSLESLNLAENNFESLP 771 (1099)
Q Consensus 748 ~~~~~~l~sL~~L~L~~n~l~~lp 771 (1099)
+ .+..+++|+.|+|++|.+...|
T Consensus 191 ~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 191 R-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp G-GGTTCTTCSEEECCSEEEECCC
T ss_pred h-HHccCCCCCEEEccCCcCcCCc
Confidence 5 5888899999999999887665
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=4.5e-17 Score=196.04 Aligned_cols=203 Identities=19% Similarity=0.137 Sum_probs=128.1
Q ss_pred CccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEE-cc
Q 001326 570 NVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLA-LD 648 (1099)
Q Consensus 570 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~-L~ 648 (1099)
+++.|++++|.++.+|..++.+++|+.|++++|.....++..+ ..+...+..|..++.+++|+.|+ ++
T Consensus 350 ~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp TSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred cceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcccCcchh
Confidence 4455666666666666666666666666665543111111000 00012233344444445555554 33
Q ss_pred CCCCcccCc------cccc--CCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCC
Q 001326 649 RSGIKELPS------SIEN--LEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGC 720 (1099)
Q Consensus 649 ~~~l~~lp~------~l~~--l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~ 720 (1099)
.|.+..++. .+.. ...|+.|++++|.+.+ +|. ++.+++|+.|++++|.+..+|..++.+++|+.|+|++|
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred hcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC
Confidence 332222211 0110 1357788888876554 565 77888888888888888888888888888888888888
Q ss_pred CCCCCCCCCCCCCCCEEeccCCCCccc--ccccCCCCCCCEEEccCCCCccccccc----cCCCCCCEEee
Q 001326 721 RGFALPPLSTLSSLRTLTLSGCGIIEI--SQDICCLSSLESLNLAENNFESLPSSI----SQLSCLRRLCL 785 (1099)
Q Consensus 721 ~~~~l~~l~~l~~L~~L~Ls~~~l~~l--~~~~~~l~sL~~L~L~~n~l~~lp~~l----~~l~~L~~L~L 785 (1099)
.+..+|.++.+++|+.|+|++|.+..+ |..+..+++|+.|+|++|.++.+|..+ ..+|+|+.|++
T Consensus 497 ~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 497 ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 887777788888888888888888876 777888888888888888888776543 33777777753
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=4.4e-15 Score=153.78 Aligned_cols=57 Identities=26% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCCCCCEEeccCCC-CcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCC
Q 001326 730 TLSSLRTLTLSGCG-IIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNC 788 (1099)
Q Consensus 730 ~l~~L~~L~Ls~~~-l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c 788 (1099)
.+++|++|++++|. +..++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|
T Consensus 134 ~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC
T ss_pred hCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc
Confidence 33444444444443 33333 3344444444444444444444 4444455555555544
No 110
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.57 E-value=3.2e-14 Score=161.86 Aligned_cols=292 Identities=15% Similarity=0.097 Sum_probs=171.0
Q ss_pred cCCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccc--cCCCCHH
Q 001326 26 SVSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVES--ENGHRLV 103 (1099)
Q Consensus 26 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~--~~~~~~~ 103 (1099)
.++..++.||||++++++|.+++..+ +++.|+|++|+|||||+++++++.. .+|+. ..... .......
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITRE 75 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCHH
Confidence 45567788999999999999998642 6899999999999999999998752 45554 22111 0111334
Q ss_pred HHHHHHHHHHhc----------------ccccccCCC---hhHHHHHHhcC-CeEEEEEeCCCChh--------H-HHHH
Q 001326 104 YLRERVLSEIFE----------------ENIKIETPC---LPEYIGERLRR-MKVLIVLDDVNKVG--------Q-LKYL 154 (1099)
Q Consensus 104 ~l~~~ll~~l~~----------------~~~~~~~~~---~~~~l~~~L~~-kr~LlVLDdv~~~~--------~-~~~l 154 (1099)
.+.+.+...+.. ......... ....+.+.... ++++|||||++... + +..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 444444443221 000000011 23334333332 38999999997633 2 2323
Q ss_pred hcCCCCCCCCCeEEEEeCCccccccc----C----C--CCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHH
Q 001326 155 AGGIDRFGPGSRIIITTRDKWILDNF----G----V--HSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVL 224 (1099)
Q Consensus 155 ~~~~~~~~~gsrIiiTTR~~~v~~~~----~----~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~ 224 (1099)
...... .++.++|+|++........ . . .....+++.+|+.+|+.+++...+....... -.+.+.+++
T Consensus 156 ~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEEAV 232 (350)
T ss_dssp HHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHH
T ss_pred HHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Confidence 221111 2577899999875431110 0 1 1112799999999999999987542211111 124678899
Q ss_pred HHhCCCchHHHHHhhhcCC-CCHHHHHHHHHHHhcCCCchhHHHHhhcccCC---ChhhhhHHhhhccccccchHhHHHH
Q 001326 225 KYANGNPLALTVLGSFFHQ-KSKPDWEKALEKINRISDPDIYDVLKISYNDL---RPEEKSIFLDIACFVVGEEKDFVTS 300 (1099)
Q Consensus 225 ~~~~GlPLal~~lg~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~la~f~~~~~~~~~~~ 300 (1099)
..++|+|+++..++..+.. .+...+. ..+.. .+...+.-.+..+ ++..+.++..+|+ . ......+..
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~l~~~~~~~~~~l~~la~-g-~~~~~~l~~ 303 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTLE----VAKGLIMGELEELRRRSPRYVDILRAIAL-G-YNRWSLIRD 303 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHT-T-CCSHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHH---HHHHH----HHHHHHHHHHHHHHhCChhHHHHHHHHHh-C-CCCHHHHHH
Confidence 9999999999998875432 2222221 11110 0111111111222 7889999999998 2 234444544
Q ss_pred Hhc-CC-Cc----hhhhHHHHhhccceEEecCCeEEe-hHHHHHHHH
Q 001326 301 ILE-DP-NI----AHYGLSVLIERSLVTISKFNKIEM-HDLLQEMGR 340 (1099)
Q Consensus 301 ~l~-~~-~~----~~~~l~~L~~~sLi~~~~~~~~~m-Hdll~~~~~ 340 (1099)
.+. .. +. ...+++.|.+.++|... .+.|.+ |++++++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 304 YLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 431 11 22 45679999999999887 566654 778877643
No 111
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=2.3e-14 Score=163.53 Aligned_cols=292 Identities=17% Similarity=0.073 Sum_probs=168.4
Q ss_pred cCCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccc-cCCCCHHH
Q 001326 26 SVSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVES-ENGHRLVY 104 (1099)
Q Consensus 26 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~ 104 (1099)
.+...++.||||++++++|.+ +.. +++.|+|++|+|||||++++.++.... .+|+. ..... ........
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYKD 76 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHHH
Confidence 445567889999999999999 753 599999999999999999999987532 45554 32210 00112233
Q ss_pred HHHHHHHHHhc-------------cc-----c----ccc----CCChhHHHHHHhcC---CeEEEEEeCCCChh-----H
Q 001326 105 LRERVLSEIFE-------------EN-----I----KIE----TPCLPEYIGERLRR---MKVLIVLDDVNKVG-----Q 150 (1099)
Q Consensus 105 l~~~ll~~l~~-------------~~-----~----~~~----~~~~~~~l~~~L~~---kr~LlVLDdv~~~~-----~ 150 (1099)
+...+...+.. .. . ... .......+.+.+.. ++++|||||++... +
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 33333332211 00 0 000 01122233333321 49999999996532 2
Q ss_pred HHHHhcCCCCCCCCCeEEEEeCCccccccc--------CCC-C-cceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHH
Q 001326 151 LKYLAGGIDRFGPGSRIIITTRDKWILDNF--------GVH-S-SNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALS 220 (1099)
Q Consensus 151 ~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~--------~~~-~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~ 220 (1099)
+..+........++.++|+|+|........ ... . ...+++.+|+.+|+.+++...+.......+..
T Consensus 157 ~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~---- 232 (357)
T 2fna_A 157 LLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY---- 232 (357)
T ss_dssp CHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----
T ss_pred HHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----
Confidence 222211111112467899999976432110 011 1 12799999999999999987542111111111
Q ss_pred HHHHHHhCCCchHHHHHhhhcCC-CCHHHHHHH-HHHHhcCCCchhHHHHh-hcc--cCCChhhhhHHhhhccccccchH
Q 001326 221 KCVLKYANGNPLALTVLGSFFHQ-KSKPDWEKA-LEKINRISDPDIYDVLK-ISY--NDLRPEEKSIFLDIACFVVGEEK 295 (1099)
Q Consensus 221 ~~i~~~~~GlPLal~~lg~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~l~-~sy--~~L~~~~k~~fl~la~f~~~~~~ 295 (1099)
.+|+..++|+|+++..++..+.. .+...|... .+... ..+...+. +.+ ..+++.++.++..+|+ .. ..
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g~--~~ 305 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK-CG--KW 305 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-CB--CH
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc-CC--CH
Confidence 78999999999999999876532 233333221 11111 01111111 111 1688999999999998 22 44
Q ss_pred hHHHHH----hcC-CCc--hhhhHHHHhhccceEEecCCeEE-ehHHHHHHH
Q 001326 296 DFVTSI----LED-PNI--AHYGLSVLIERSLVTISKFNKIE-MHDLLQEMG 339 (1099)
Q Consensus 296 ~~~~~~----l~~-~~~--~~~~l~~L~~~sLi~~~~~~~~~-mHdll~~~~ 339 (1099)
..+... ... ... ....++.|.+.++|... .+.|. -|++++++.
T Consensus 306 ~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 306 SDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHhh
Confidence 444432 220 111 45679999999999887 45565 578888753
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=2.9e-14 Score=151.33 Aligned_cols=148 Identities=22% Similarity=0.226 Sum_probs=126.0
Q ss_pred CCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCc-cccCCCCCcEEEccCC
Q 001326 642 LEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPS-SIADLNKLRELCLSGC 720 (1099)
Q Consensus 642 L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~ 720 (1099)
.+.++++++.++.+|..+. ++|+.|++++|.+.+..|..+..+++|+.|++++|.+..+|. .+..+++|+.|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4567888888888887654 889999999998888888888899999999999999988875 4688999999999999
Q ss_pred CCCCCCC--CCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCCCC
Q 001326 721 RGFALPP--LSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPS-SISQLSCLRRLCLRNCNML 791 (1099)
Q Consensus 721 ~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l 791 (1099)
.+..+++ +..+++|++|++++|.+..+|..+..+++|+.|+|++|+++.+|. .+..+++|+.|++++|+..
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9888776 678899999999999999999888899999999999999998874 4778899999999987643
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=1.9e-14 Score=150.52 Aligned_cols=177 Identities=20% Similarity=0.227 Sum_probs=97.6
Q ss_pred cEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCC
Q 001326 572 VELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSG 651 (1099)
Q Consensus 572 ~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 651 (1099)
+.++..++.+..+|..+ .++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 35566667777777544 3577777777776655444445556666666666555444433444555555555555555
Q ss_pred CcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCcc-ccCCCCCcEEEccCCCCCCCCC--C
Q 001326 652 IKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSS-IADLNKLRELCLSGCRGFALPP--L 728 (1099)
Q Consensus 652 l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~l~~--l 728 (1099)
++.+|. ..+..+++|++|++++|.+..++.. +..+++|+.|++++|.+..++. +
T Consensus 88 l~~~~~-----------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 144 (208)
T 2o6s_A 88 LQSLPN-----------------------GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144 (208)
T ss_dssp CCCCCT-----------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCccCH-----------------------hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh
Confidence 554443 3334444444444444444444332 3445555555555555444443 4
Q ss_pred CCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCc-cccccccCCCC
Q 001326 729 STLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFE-SLPSSISQLSC 779 (1099)
Q Consensus 729 ~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~-~lp~~l~~l~~ 779 (1099)
..+++|+.|++++|.+. +.+++|+.|+++.|+++ .+|..++.++.
T Consensus 145 ~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 55556666666666432 33456666777766666 66666665544
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=2e-14 Score=148.81 Aligned_cols=151 Identities=17% Similarity=0.221 Sum_probs=71.3
Q ss_pred CCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcc-cCcccccCCCCcEE
Q 001326 590 SLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKE-LPSSIENLEGLKEL 668 (1099)
Q Consensus 590 ~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L 668 (1099)
.+++|+.|++++|.+. .+| .+..+++|++|++++|.. ..+ ..+..+++|++|++++|.++. .|..+..+++|+.|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3445555555555433 223 344444555555554421 111 234444555555555554442 34444444445555
Q ss_pred EccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCC-CCCCCCCCCCCCCCEEeccCCCCccc
Q 001326 669 QLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCR-GFALPPLSTLSSLRTLTLSGCGIIEI 747 (1099)
Q Consensus 669 ~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~-~~~l~~l~~l~~L~~L~Ls~~~l~~l 747 (1099)
++++|...+..|..+ ..+++|++|++++|. +..++.+..+++|+.|++++|.+..+
T Consensus 118 ~Ls~n~i~~~~~~~l-----------------------~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 118 DISHSAHDDSILTKI-----------------------NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp ECCSSBCBGGGHHHH-----------------------TTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCC
T ss_pred EecCCccCcHhHHHH-----------------------hhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcCh
Confidence 554444444444444 444444444454444 44444445555555555555555554
Q ss_pred ccccCCCCCCCEEEccCCCCc
Q 001326 748 SQDICCLSSLESLNLAENNFE 768 (1099)
Q Consensus 748 ~~~~~~l~sL~~L~L~~n~l~ 768 (1099)
+ .+..+++|+.|++++|++.
T Consensus 175 ~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp T-TGGGCSSCCEEEECBC---
T ss_pred H-HhccCCCCCEEEeeCcccC
Confidence 4 4455566666666666543
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=5.7e-14 Score=148.03 Aligned_cols=145 Identities=23% Similarity=0.343 Sum_probs=107.8
Q ss_pred CEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccC-CccccCCCCCcEEEccCCC
Q 001326 643 EKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQL-PSSIADLNKLRELCLSGCR 721 (1099)
Q Consensus 643 ~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~ 721 (1099)
+.++++++.++.+|..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+..+ |..+.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456666777777776553 5677777777776665556677777777777777777765 5677777788888888887
Q ss_pred CCCCCC--CCCCCCCCEEeccCCCCcccc-cccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCC
Q 001326 722 GFALPP--LSTLSSLRTLTLSGCGIIEIS-QDICCLSSLESLNLAENNFESLPS-SISQLSCLRRLCLRNCN 789 (1099)
Q Consensus 722 ~~~l~~--l~~l~~L~~L~Ls~~~l~~l~-~~~~~l~sL~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~ 789 (1099)
+..+|. +..+++|++|+|++|.+..++ ..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 777766 677888888888888888754 457788888888888888887765 47778888888888875
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=6.5e-14 Score=146.35 Aligned_cols=167 Identities=22% Similarity=0.254 Sum_probs=92.8
Q ss_pred EEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCcc-ccCCCCCcEEEccCCCC
Q 001326 644 KLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSS-IADLNKLRELCLSGCRG 722 (1099)
Q Consensus 644 ~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~ 722 (1099)
.++++++.++.+|..+ .++|+.|++++|...+..+..+..+++|++|++++|.+..+|.. +..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 4444555555555433 24555666666555544444455566666666666666555442 45566666666666665
Q ss_pred CCCCC--CCCCCCCCEEeccCCCCcccccc-cCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCCCCCCCCCC
Q 001326 723 FALPP--LSTLSSLRTLTLSGCGIIEISQD-ICCLSSLESLNLAENNFESLPSS-ISQLSCLRRLCLRNCNMLQSLPELP 798 (1099)
Q Consensus 723 ~~l~~--l~~l~~L~~L~Ls~~~l~~l~~~-~~~l~sL~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~l~ 798 (1099)
..+++ +..+++|++|++++|.+..++.. +..+++|+.|++++|.++.+|.. +..+++|+.|++++|+.....
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~---- 164 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC---- 164 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT----
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC----
Confidence 55554 45666666666666666655544 45666666666666666655543 455666666666666433322
Q ss_pred CCCCeeecccCcCcccCC
Q 001326 799 LGLRHLEASNCKRLQSFP 816 (1099)
Q Consensus 799 ~sL~~L~i~~c~~L~~l~ 816 (1099)
++|+.|+++.+..-..+|
T Consensus 165 ~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 165 PGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp TTTHHHHHHHHHCTTTBB
T ss_pred CCHHHHHHHHHhCCceee
Confidence 244555554444333333
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=1.3e-14 Score=157.60 Aligned_cols=172 Identities=20% Similarity=0.188 Sum_probs=120.3
Q ss_pred CCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEc
Q 001326 591 LPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQL 670 (1099)
Q Consensus 591 l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L 670 (1099)
+.++..++++++.+... + .+..+++|+.|++++|... .++ .+..+++|+.|++++|.++.++. +..+++|+.|++
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 33444455555443322 2 3455566666666665433 233 46667777777777777777666 777777777777
Q ss_pred cCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccc
Q 001326 671 MCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQD 750 (1099)
Q Consensus 671 ~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~ 750 (1099)
++|...+ +|. +.. ++|+.|++++|.+..++ .+..+++|+.|++++|.+..++.+..+++|+.|++++|.+..+ ..
T Consensus 93 ~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-~~ 167 (263)
T 1xeu_A 93 NRNRLKN-LNG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-GG 167 (263)
T ss_dssp CSSCCSC-CTT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-TT
T ss_pred CCCccCC-cCc-ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch-HH
Confidence 7776544 332 222 77888888888887765 4778888888888888888887788888899999999988877 66
Q ss_pred cCCCCCCCEEEccCCCCccccc
Q 001326 751 ICCLSSLESLNLAENNFESLPS 772 (1099)
Q Consensus 751 ~~~l~sL~~L~L~~n~l~~lp~ 772 (1099)
+..+++|+.|++++|.++..|.
T Consensus 168 l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp STTCCCCCEEEEEEEEEECCCE
T ss_pred hccCCCCCEEeCCCCcccCCcc
Confidence 8888999999999998876664
No 118
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.52 E-value=9.3e-14 Score=161.87 Aligned_cols=281 Identities=15% Similarity=0.061 Sum_probs=166.7
Q ss_pred CCCCCccccchhhHHHHHHhh-cC--CC--CCEEEEEE--EcCCCCcHHHHHHHHHHHHhcc-----Cce-eEEEEeccc
Q 001326 28 SSDFKGLVGLSSRIEKLISLL-CV--GF--PDFRIVGI--WGMAGIGKTTLAGAIFNLISWE-----FEG-RCFVSNVRV 94 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~-----f~~-~~~~~~~~~ 94 (1099)
...++.++||+.+++++.+++ .. .. ...+.+.| +|++|+||||||++++++.... +.. .+|+. ..
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 95 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-AF- 95 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-GG-
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-CC-
Confidence 345678999999999999988 41 11 23445556 9999999999999999977553 232 34443 21
Q ss_pred cccCCCCHHHHHHHHHHHHhcccccccC-CC-hhHHHHHHhc--CCeEEEEEeCCCCh--------hHHHHHhcCCCCC-
Q 001326 95 ESENGHRLVYLRERVLSEIFEENIKIET-PC-LPEYIGERLR--RMKVLIVLDDVNKV--------GQLKYLAGGIDRF- 161 (1099)
Q Consensus 95 ~~~~~~~~~~l~~~ll~~l~~~~~~~~~-~~-~~~~l~~~L~--~kr~LlVLDdv~~~--------~~~~~l~~~~~~~- 161 (1099)
.......+..+++.++......... .. ....+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 96 ---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~ 172 (412)
T 1w5s_A 96 ---NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP 172 (412)
T ss_dssp ---GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC
T ss_pred ---CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc
Confidence 2345667888888877443221111 11 3445555554 67999999999753 3333333222111
Q ss_pred --C--CCCeEEEEeCCccccccc--------C-CCCcceEecCCCCHHHHHHHHhhhh---cCCCCCChhHHHHHHHHHH
Q 001326 162 --G--PGSRIIITTRDKWILDNF--------G-VHSSNIYEVNGLEYDEARELFCNYA---FKENHCPDDLLALSKCVLK 225 (1099)
Q Consensus 162 --~--~gsrIiiTTR~~~v~~~~--------~-~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~ 225 (1099)
+ ....||+|||...+.... . ... .+++++++.++++++|...+ +...... .+....+++
T Consensus 173 ~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~--~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~ 247 (412)
T 1w5s_A 173 SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGF--KLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISD 247 (412)
T ss_dssp CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSE--EEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHH
T ss_pred cCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCC--eeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHH
Confidence 1 334478888766532111 1 122 49999999999999997654 3221122 356778899
Q ss_pred HhC------CCchHHHHHhhhc------CC---CCHHHHHHHHHHHhcCCCchhHHHHhhcccCCChhhhhHHhhhcccc
Q 001326 226 YAN------GNPLALTVLGSFF------HQ---KSKPDWEKALEKINRISDPDIYDVLKISYNDLRPEEKSIFLDIACFV 290 (1099)
Q Consensus 226 ~~~------GlPLal~~lg~~L------~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~ 290 (1099)
+++ |.|..+..++... .+ -+...+..++..... ...+.-++..|++.++.++..+|.+.
T Consensus 248 ~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~ 321 (412)
T 1w5s_A 248 VYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEAT 321 (412)
T ss_dssp HHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999 9997655443321 11 123334444332110 23455678899999999999999764
Q ss_pred c-c---chHhH-------HH-HHhcCCCc----hhhhHHHHhhccceEEe
Q 001326 291 V-G---EEKDF-------VT-SILEDPNI----AHYGLSVLIERSLVTIS 324 (1099)
Q Consensus 291 ~-~---~~~~~-------~~-~~l~~~~~----~~~~l~~L~~~sLi~~~ 324 (1099)
. + ..... +. ........ ....++.|.+.++|...
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 322 LGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 2 1 11211 22 22221111 34568999999999875
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=1e-13 Score=146.06 Aligned_cols=144 Identities=20% Similarity=0.239 Sum_probs=92.6
Q ss_pred EEEccCCCCcccCcccccCCCCcEEEccCCCCCCccc-ccccCCCCCceeecCCCCCccCCc-cccCCCCCcEEEccCCC
Q 001326 644 KLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLP-ESLGNLKSLVVLDANRSAILQLPS-SIADLNKLRELCLSGCR 721 (1099)
Q Consensus 644 ~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~ 721 (1099)
.+++++|.++.+|..+. +.++.|++++|.+.+..+ ..+..+++|+.|++++|.+..++. .+..+++|++|+|++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 55566666666655442 344566666665554433 335666666666666666665543 56666666666666666
Q ss_pred CCCCCC--CCCCCCCCEEeccCCCCccc-ccccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCC
Q 001326 722 GFALPP--LSTLSSLRTLTLSGCGIIEI-SQDICCLSSLESLNLAENNFESL-PSSISQLSCLRRLCLRNCN 789 (1099)
Q Consensus 722 ~~~l~~--l~~l~~L~~L~Ls~~~l~~l-~~~~~~l~sL~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~ 789 (1099)
+..+++ +..+++|++|+|++|.+..+ |..+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 666555 66677777777777777765 44567777777777777777765 5667777777777777764
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=3.3e-16 Score=188.47 Aligned_cols=119 Identities=26% Similarity=0.271 Sum_probs=101.9
Q ss_pred CCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCC
Q 001326 641 PLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGC 720 (1099)
Q Consensus 641 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~ 720 (1099)
.|+.|++++|.++.+|. ++.+++|+.|++++|.+. .+|..++.+++|+.|++++|.++.+| .++.+++|+.|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 58899999999998887 889999999999998866 77888999999999999999999888 8889999999999999
Q ss_pred CCCCC--CC-CCCCCCCCEEeccCCCCccccccc----CCCCCCCEEEc
Q 001326 721 RGFAL--PP-LSTLSSLRTLTLSGCGIIEISQDI----CCLSSLESLNL 762 (1099)
Q Consensus 721 ~~~~l--~~-l~~l~~L~~L~Ls~~~l~~l~~~~----~~l~sL~~L~L 762 (1099)
.+..+ |. +..+++|+.|+|++|.+..+|+.. ..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 98877 33 788999999999999998877653 33789998874
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=1.7e-13 Score=144.43 Aligned_cols=148 Identities=18% Similarity=0.204 Sum_probs=99.4
Q ss_pred cEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCC
Q 001326 572 VELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSG 651 (1099)
Q Consensus 572 ~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 651 (1099)
+.++.+++.+..+|..+. ++|+.|++++|.+....+..+..+++|+.|++++|......|..|..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456777778888887654 678888888888776666667777777777777777766667777777777777777777
Q ss_pred CcccCcc-cccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCc-cccCCCCCcEEEccCCC
Q 001326 652 IKELPSS-IENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPS-SIADLNKLRELCLSGCR 721 (1099)
Q Consensus 652 l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~ 721 (1099)
++.+|.. +.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+..++. .+..+++|+.|+|++|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 7777654 3566677777777666666555566666666666666666655543 24444444444444443
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=6.3e-14 Score=159.92 Aligned_cols=177 Identities=19% Similarity=0.181 Sum_probs=106.5
Q ss_pred cEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccc-cCccccEEeccCCCCCCccchhhcCCCCCCEEEccCC
Q 001326 572 VELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGIC-KLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRS 650 (1099)
Q Consensus 572 ~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~-~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~ 650 (1099)
+.++++++.+..+|..+. +.++.|+|++|.+....+..+. .+++|+.|+|++|......+..|..+++|+.|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456677777777776553 4577788888776665555555 6666777777666665555556666666666666666
Q ss_pred CCcccCc-ccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCC
Q 001326 651 GIKELPS-SIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLS 729 (1099)
Q Consensus 651 ~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~ 729 (1099)
.++.++. .+.++++|+.|+|++|.+....|..+..+++|+.|++++|.+..+|..+.. .+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~------------------~~~ 160 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK------------------DGN 160 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---------------------
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc------------------Ccc
Confidence 6665544 355566666666666665555555555555555555555555555443210 013
Q ss_pred CCCCCCEEeccCCCCccccc-ccCCCCC--CCEEEccCCCCc
Q 001326 730 TLSSLRTLTLSGCGIIEISQ-DICCLSS--LESLNLAENNFE 768 (1099)
Q Consensus 730 ~l~~L~~L~Ls~~~l~~l~~-~~~~l~s--L~~L~L~~n~l~ 768 (1099)
.+++|+.|+|++|.+..+|. .+..+++ |+.|+|++|.+.
T Consensus 161 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 45666666666666666553 2445554 367777777665
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=3.9e-13 Score=141.57 Aligned_cols=146 Identities=18% Similarity=0.169 Sum_probs=77.3
Q ss_pred cEEEecCcCCcccCccccCCCCCcEEEeCCcccccccc-cccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCC
Q 001326 572 VELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVS-TGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRS 650 (1099)
Q Consensus 572 ~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~ 650 (1099)
+.++++++.++.+|..+. ..++.|++++|.+....+ ..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 467777777777776553 345778888777655533 23555666666666655554444445555555555555555
Q ss_pred CCcccCcc-cccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccC-CccccCCCCCcEEEccC
Q 001326 651 GIKELPSS-IENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQL-PSSIADLNKLRELCLSG 719 (1099)
Q Consensus 651 ~l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~ 719 (1099)
.++.++.. +.++++|++|++++|.+.+..|..+..+++|+.|++++|.+..+ |..+..+++|+.|+|++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 55544432 44455555555555544444444444444444444444444433 33333333333333333
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=5.4e-13 Score=141.49 Aligned_cols=148 Identities=23% Similarity=0.202 Sum_probs=93.8
Q ss_pred cEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCC
Q 001326 572 VELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSG 651 (1099)
Q Consensus 572 ~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 651 (1099)
+.++.+++.+..+|..+. ++|+.|+|++|.+.+..|.. +..+++|+.|+|++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~------------------------~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGV------------------------FDSLINLKELYLGSNQ 75 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTT------------------------TTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHH------------------------hhCccCCcEEECCCCC
Confidence 456666666677766443 56666666666555544444 4445555555555555
Q ss_pred CcccCc-ccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCC--C
Q 001326 652 IKELPS-SIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPP--L 728 (1099)
Q Consensus 652 l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~--l 728 (1099)
++.+|. .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..+|..+..+++|+.|+|++|.+..++. +
T Consensus 76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 555543 2355566666666666555444455666777777777777777777777777777777777777766664 6
Q ss_pred CCCCCCCEEeccCCCCc
Q 001326 729 STLSSLRTLTLSGCGII 745 (1099)
Q Consensus 729 ~~l~~L~~L~Ls~~~l~ 745 (1099)
..+++|+.|++++|.+.
T Consensus 156 ~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCTTCCEEECTTSCBC
T ss_pred hCCCCCCEEEeeCCCcc
Confidence 67778888888887765
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=3e-13 Score=154.22 Aligned_cols=149 Identities=22% Similarity=0.246 Sum_probs=83.1
Q ss_pred EEEccCCCCcccCcccccCCCCcEEEccCCCCCCccccccc-CCCCCceeecCCCCCccCC-ccccCCCCCcEEEccCCC
Q 001326 644 KLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLG-NLKSLVVLDANRSAILQLP-SSIADLNKLRELCLSGCR 721 (1099)
Q Consensus 644 ~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~ 721 (1099)
.++++++.++.+|..+. +.++.|+|++|.+.+..+..+. .+++|+.|++++|.+..++ ..+..+++|++|+|++|.
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 45555555555554332 2355555555555444444444 5556666666666655554 345556666666666666
Q ss_pred CCCCCC--CCCCCCCCEEeccCCCCccc-ccccCCCCCCCEEEccCCCCccccccc----cCCCCCCEEeecCCCCCCCC
Q 001326 722 GFALPP--LSTLSSLRTLTLSGCGIIEI-SQDICCLSSLESLNLAENNFESLPSSI----SQLSCLRRLCLRNCNMLQSL 794 (1099)
Q Consensus 722 ~~~l~~--l~~l~~L~~L~Ls~~~l~~l-~~~~~~l~sL~~L~L~~n~l~~lp~~l----~~l~~L~~L~L~~c~~l~~l 794 (1099)
+..+++ +..+++|+.|+|++|.+..+ +..+..+++|+.|+|++|.++.+|..+ ..+++|+.|+|++|+ ++.+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCcc
Confidence 555544 55666666666666666654 334666666666666666666666543 346666666666643 3344
Q ss_pred C
Q 001326 795 P 795 (1099)
Q Consensus 795 p 795 (1099)
|
T Consensus 179 ~ 179 (361)
T 2xot_A 179 P 179 (361)
T ss_dssp C
T ss_pred C
Confidence 4
No 126
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=1.1e-11 Score=142.77 Aligned_cols=273 Identities=15% Similarity=0.106 Sum_probs=171.8
Q ss_pred CCccccchhhHHHHHHhhcC--CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc------C-c-eeEEEEeccccccCCC
Q 001326 31 FKGLVGLSSRIEKLISLLCV--GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE------F-E-GRCFVSNVRVESENGH 100 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f-~-~~~~~~~~~~~~~~~~ 100 (1099)
++.++||+.+++++..++.. .....+.+.|+|++|+||||+|+++++.+... + . ..+|+. .. ...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~----~~~ 93 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CR----EVG 93 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HH----HHC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-Cc----cCC
Confidence 47899999999999988753 23445689999999999999999999976443 1 2 234443 21 223
Q ss_pred -CHHHHHHHHHHHHhcccccccCC--C-hhHHHHHHhcCCeEEEEEeCCCChhH-------HHHHhcCCCCCCCCCeEEE
Q 001326 101 -RLVYLRERVLSEIFEENIKIETP--C-LPEYIGERLRRMKVLIVLDDVNKVGQ-------LKYLAGGIDRFGPGSRIII 169 (1099)
Q Consensus 101 -~~~~l~~~ll~~l~~~~~~~~~~--~-~~~~l~~~L~~kr~LlVLDdv~~~~~-------~~~l~~~~~~~~~gsrIii 169 (1099)
....+..+++.++.......... . ....+.+.+..++.+|||||++.... +..+.... .+.+||+
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~ 169 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIM 169 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEE
Confidence 56677777777775432221111 1 45666777777666999999975432 33443332 6788999
Q ss_pred EeCCccccccc------CCCCcceEecCCCCHHHHHHHHhhhhc---CCCCCChhHHHHHHHHHHHhC---CCch-HHHH
Q 001326 170 TTRDKWILDNF------GVHSSNIYEVNGLEYDEARELFCNYAF---KENHCPDDLLALSKCVLKYAN---GNPL-ALTV 236 (1099)
Q Consensus 170 TTR~~~v~~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---GlPL-al~~ 236 (1099)
||+........ .... .+++++++.++..+++...+. ......+ +..+.++++++ |.|. |+..
T Consensus 170 ~t~~~~~~~~l~~~l~sr~~~--~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~ 244 (384)
T 2qby_B 170 ISNDINVRDYMEPRVLSSLGP--SVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNL 244 (384)
T ss_dssp ECSSTTTTTTSCHHHHHTCCC--EEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCC--eEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHH
Confidence 99876321111 1122 799999999999999998753 2222222 34556777777 8887 4333
Q ss_pred Hhhhc--C----CCCHHHHHHHHHHHhcCCCchhHHHHhhcccCCChhhhhHHhhhccccc-cchHhHHHHHhcCCC---
Q 001326 237 LGSFF--H----QKSKPDWEKALEKINRISDPDIYDVLKISYNDLRPEEKSIFLDIACFVV-GEEKDFVTSILEDPN--- 306 (1099)
Q Consensus 237 lg~~L--~----~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~-~~~~~~~~~~l~~~~--- 306 (1099)
+-... . .-+.+.+..++++... ..+..+++.|+++++..+..++.... +...+....+....|
T Consensus 245 l~~a~~~a~~~~~i~~~~v~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~ 317 (384)
T 2qby_B 245 LFRAAQLASGGGIIRKEHVDKAIVDYEQ-------ERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKP 317 (384)
T ss_dssp HHHHHHHTTSSSCCCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhcCCCccCHHHHHHHHHHHhc-------chHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCC
Confidence 32221 1 2366778777776532 34556778899999988888877222 211112222222211
Q ss_pred c----hhhhHHHHhhccceEEe
Q 001326 307 I----AHYGLSVLIERSLVTIS 324 (1099)
Q Consensus 307 ~----~~~~l~~L~~~sLi~~~ 324 (1099)
. ....++.|.++++|...
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 1 34568889999999875
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=3.6e-13 Score=135.38 Aligned_cols=131 Identities=22% Similarity=0.310 Sum_probs=68.0
Q ss_pred CCCCCEEEccCCCCc--ccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCcc-CCccccCCCCCcEE
Q 001326 639 MEPLEKLALDRSGIK--ELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQ-LPSSIADLNKLREL 715 (1099)
Q Consensus 639 l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L 715 (1099)
.++|+.|++++|.++ .+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.. +|..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 355666666666665 5666566666666666666654433 445555666666666665555 44444445555555
Q ss_pred EccCCCCCCCC---CCCCCCCCCEEeccCCCCccccc----ccCCCCCCCEEEccCCCCcccc
Q 001326 716 CLSGCRGFALP---PLSTLSSLRTLTLSGCGIIEISQ----DICCLSSLESLNLAENNFESLP 771 (1099)
Q Consensus 716 ~L~~~~~~~l~---~l~~l~~L~~L~Ls~~~l~~l~~----~~~~l~sL~~L~L~~n~l~~lp 771 (1099)
++++|.+..++ .+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+..+|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 55555544432 23344444444444444444433 3444444444444444444433
No 128
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.39 E-value=9.4e-12 Score=143.47 Aligned_cols=309 Identities=13% Similarity=0.054 Sum_probs=183.8
Q ss_pred CCCCCccccchhhHHHHHHhhcCC--CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC-----ce-eEEEEeccccccCC
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVG--FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF-----EG-RCFVSNVRVESENG 99 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~~-~~~~~~~~~~~~~~ 99 (1099)
...++.++||+.+++++..++... ....+.+.|+|++|+||||+|+++++.....+ .. .+|+. . . ..
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-~---~-~~ 89 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-A---R-HR 89 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-T---T-TS
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-C---C-cC
Confidence 345588999999999999998532 34567889999999999999999999774431 22 23332 2 1 34
Q ss_pred CCHHHHHHHHHHHHhcccccccC-CC-hhHHHHHHh--cCCeEEEEEeCCCChhH-------HHHHhcCCCCC--CCCCe
Q 001326 100 HRLVYLRERVLSEIFEENIKIET-PC-LPEYIGERL--RRMKVLIVLDDVNKVGQ-------LKYLAGGIDRF--GPGSR 166 (1099)
Q Consensus 100 ~~~~~l~~~ll~~l~~~~~~~~~-~~-~~~~l~~~L--~~kr~LlVLDdv~~~~~-------~~~l~~~~~~~--~~gsr 166 (1099)
.+...+...++.++......... .. ....+.+.+ .+++.+|||||++.... +..+....... ..+..
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~ 169 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVS 169 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CE
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEE
Confidence 45667777787777443221111 11 344555555 35689999999986532 22222211111 34567
Q ss_pred EEEEeCCccccccc-----CCCCcceEecCCCCHHHHHHHHhhhhc---CCCCCChhHHHHHHHHHHHhC---CCch-HH
Q 001326 167 IIITTRDKWILDNF-----GVHSSNIYEVNGLEYDEARELFCNYAF---KENHCPDDLLALSKCVLKYAN---GNPL-AL 234 (1099)
Q Consensus 167 IiiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---GlPL-al 234 (1099)
+|+||+........ ..-....+.+++++.++..+++...+. ......+ +..+.++++++ |.|- ++
T Consensus 170 ~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~ 246 (387)
T 2v1u_A 170 LVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRAL 246 (387)
T ss_dssp EEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHH
T ss_pred EEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHH
Confidence 88888766322111 111112689999999999999988753 2222222 34566777777 9994 33
Q ss_pred HHHhhhcC-----C---CCHHHHHHHHHHHhcCCCchhHHHHhhcccCCChhhhhHHhhhccccccch---Hh----HHH
Q 001326 235 TVLGSFFH-----Q---KSKPDWEKALEKINRISDPDIYDVLKISYNDLRPEEKSIFLDIACFVVGEE---KD----FVT 299 (1099)
Q Consensus 235 ~~lg~~L~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~---~~----~~~ 299 (1099)
.++..... + -+.+.+..++.... ...+.-++..|+++++..++.++....+.. .. ...
T Consensus 247 ~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 247 DLLRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 33222211 1 25566777766542 234555678899999999888885544321 11 112
Q ss_pred HHhcCCCc-------hhhhHHHHhhccceEEec-----CCeEEehHHHHHHHHHHHhhhcccCCCCcccccChHHHHHHH
Q 001326 300 SILEDPNI-------AHYGLSVLIERSLVTISK-----FNKIEMHDLLQEMGREIVRQECIKEPGKRSRLWNHEEILHVI 367 (1099)
Q Consensus 300 ~~l~~~~~-------~~~~l~~L~~~sLi~~~~-----~~~~~mHdll~~~~~~i~~~~~~~~~~~~~~l~~~~~i~~vl 367 (1099)
.+....|. ....++.|...+++.... .+++ ...+..|+++++..++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~----------------------~~~~l~~~~~~i~~~l 377 (387)
T 2v1u_A 320 ELTSTLGLEHVTLRRVSGIISELDMLGIVKSRVVSRGRYGKT----------------------REVSLDADRLAVENAL 377 (387)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEEEECGGGCEE----------------------EEEEECSCHHHHHHHH
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEEeecCCCCCce----------------------eEEEecCCHHHHHHHH
Confidence 22211111 345678888999988742 1111 1234667888888888
Q ss_pred hcCCCc
Q 001326 368 KKNKGT 373 (1099)
Q Consensus 368 ~~~~~~ 373 (1099)
.++...
T Consensus 378 ~~~~~~ 383 (387)
T 2v1u_A 378 SEDPFV 383 (387)
T ss_dssp HHSTTG
T ss_pred hccHhh
Confidence 776543
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=5.6e-13 Score=134.01 Aligned_cols=131 Identities=23% Similarity=0.193 Sum_probs=76.3
Q ss_pred CCCCCcEEEeCCcccc-cccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcc-cCcccccCCCCcE
Q 001326 590 SLPNLKILNLGFCKRL-KRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKE-LPSSIENLEGLKE 667 (1099)
Q Consensus 590 ~l~~L~~L~L~~~~~~-~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~ 667 (1099)
..++|+.|++++|.+. +.+|..+..+++|+.|++++|..... ..+..+++|++|++++|.++. +|..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467778888877765 46666667777777777777664443 555666666666666666665 5555555666666
Q ss_pred EEccCCCCCCcc-cccccCCCCCceeecCCCCCccCCc----cccCCCCCcEEEccCCCC
Q 001326 668 LQLMCCSKLGSL-PESLGNLKSLVVLDANRSAILQLPS----SIADLNKLRELCLSGCRG 722 (1099)
Q Consensus 668 L~L~~~~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~L~~~~~ 722 (1099)
|++++|.+.+.. +..+..+++|+.|++++|.+..+|. .+..+++|+.|++++|..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 666666543321 1445555555555555555555543 444444444444444443
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=7e-12 Score=144.43 Aligned_cols=313 Identities=15% Similarity=0.078 Sum_probs=177.1
Q ss_pred CCCCCccccchhhHHHHHHhhcCC--CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc---eeEEEEeccccccCCCCH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVG--FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE---GRCFVSNVRVESENGHRL 102 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~~~~~~~~~~ 102 (1099)
...++.++||+.+++++.+++... ....+.+.|+|++|+||||||+++++.+...+. ..+|+. .. .....
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~----~~~~~ 90 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TR----QIDTP 90 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HH----HHCSH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CC----CCCCH
Confidence 345688999999999999998742 344678899999999999999999998765532 234443 21 12234
Q ss_pred HHHHHHHHHHHhcccccccC-CC-hhHHHHHHhc--CCeEEEEEeCCCCh------hHHHHHhcCCCC-CCCCCeEEEEe
Q 001326 103 VYLRERVLSEIFEENIKIET-PC-LPEYIGERLR--RMKVLIVLDDVNKV------GQLKYLAGGIDR-FGPGSRIIITT 171 (1099)
Q Consensus 103 ~~l~~~ll~~l~~~~~~~~~-~~-~~~~l~~~L~--~kr~LlVLDdv~~~------~~~~~l~~~~~~-~~~gsrIiiTT 171 (1099)
..+...++.++......... .. ....+.+.+. +++.+|||||++.. +.+..+...... ...+..+|+||
T Consensus 91 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 91 YRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEE
Confidence 44455554443221111110 11 2344444443 45899999999643 334444322211 13355678888
Q ss_pred CCcccccccCC-----CCcceEecCCCCHHHHHHHHhhhhc---CCCCCChhHHHHHHHHHHHhC---CCchHH-HHHhh
Q 001326 172 RDKWILDNFGV-----HSSNIYEVNGLEYDEARELFCNYAF---KENHCPDDLLALSKCVLKYAN---GNPLAL-TVLGS 239 (1099)
Q Consensus 172 R~~~v~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---GlPLal-~~lg~ 239 (1099)
++......... -....+.+++++.++..+++...+. ...... .+..+.++++++ |.|..+ .++..
T Consensus 171 ~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~ 247 (386)
T 2qby_A 171 NDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRV 247 (386)
T ss_dssp SCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 86643322210 1112799999999999999987643 112222 245566777777 999844 33322
Q ss_pred hc-----CC---CCHHHHHHHHHHHhcCCCchhHHHHhhcccCCChhhhhHHhhhccccc-cch---H-------hHHHH
Q 001326 240 FF-----HQ---KSKPDWEKALEKINRISDPDIYDVLKISYNDLRPEEKSIFLDIACFVV-GEE---K-------DFVTS 300 (1099)
Q Consensus 240 ~L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~-~~~---~-------~~~~~ 300 (1099)
.. .+ -+.+.++.++.... ...+.-.+..+++.++.++..+|.... +.. . ..+..
T Consensus 248 a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 248 SGEIAERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 21 11 24556666665543 234556678899999999988886433 211 2 11222
Q ss_pred HhcCCCc----hhhhHHHHhhccceEEecCCeEEehHHHHHHHHHHHhhhcccCCCCcccccChHHHHHHHhc-CCC
Q 001326 301 ILEDPNI----AHYGLSVLIERSLVTISKFNKIEMHDLLQEMGREIVRQECIKEPGKRSRLWNHEEILHVIKK-NKG 372 (1099)
Q Consensus 301 ~l~~~~~----~~~~l~~L~~~sLi~~~~~~~~~mHdll~~~~~~i~~~~~~~~~~~~~~l~~~~~i~~vl~~-~~~ 372 (1099)
.+..... ....++.|.+.++|.....++ ..-......+..|+++++..++.+ ...
T Consensus 321 ~~g~~~~~~~~~~~~l~~L~~~gli~~~~~~~-----------------~~~g~y~~~~l~~~~~~v~~~l~~~~~~ 380 (386)
T 2qby_A 321 KLGVEAVTQRRVSDIINELDMVGILTAKVVNR-----------------GRYGKTKEIGLAVDKNIIVRSLIESDSR 380 (386)
T ss_dssp HHTCCCCCHHHHHHHHHHHHHHTSEEEEECCC-----------------TTSCCCEEEEESSCSHHHHHHHHHHC--
T ss_pred hcCCCCCCHHHHHHHHHHHHhCCCEEEEeecC-----------------CCCCCeEEEEeCCCHHHHHHHHhcCChh
Confidence 2221111 345688899999997642100 000011123455778888888876 543
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=1.1e-13 Score=171.99 Aligned_cols=113 Identities=22% Similarity=0.229 Sum_probs=53.9
Q ss_pred cchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCC
Q 001326 632 FPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNK 711 (1099)
Q Consensus 632 ~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 711 (1099)
.+..+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|.+. .+|..++++++|+.|+|++|.+..+|..++.+++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 344455555566666666555555555555555555555555443 4444455555555555555555555554444444
Q ss_pred CcEEEccCCCCCCCCC-CCCCCCCCEEeccCCCCc
Q 001326 712 LRELCLSGCRGFALPP-LSTLSSLRTLTLSGCGII 745 (1099)
Q Consensus 712 L~~L~L~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~ 745 (1099)
|++|+|++|.+..+|. +..+++|+.|+|++|.+.
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 4444444444443332 334444444444444443
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=2.7e-13 Score=168.49 Aligned_cols=162 Identities=20% Similarity=0.166 Sum_probs=116.8
Q ss_pred EEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCC
Q 001326 644 KLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGF 723 (1099)
Q Consensus 644 ~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~ 723 (1099)
.+++..|.+...|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|.+.
T Consensus 205 ~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 205 EDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS
T ss_pred CccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC
Confidence 344555666667788899999999999999876 7777788999999999999999999999999999999999999998
Q ss_pred CCCC-CCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCc-cccccccCCC-CCCEEeecCCCCCCCCCCCCCC
Q 001326 724 ALPP-LSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFE-SLPSSISQLS-CLRRLCLRNCNMLQSLPELPLG 800 (1099)
Q Consensus 724 ~l~~-l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~c~~l~~lp~l~~s 800 (1099)
.+|. +..+++|++|+|++|.+..+|..+..+++|+.|+|++|.|+ .+|..+..+. .+..|+|++|.....+| ..
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p---~~ 360 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP---HE 360 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CC
T ss_pred ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc---cc
Confidence 8876 88999999999999999999999999999999999999998 4555554332 12246788877665555 46
Q ss_pred CCeeecccC
Q 001326 801 LRHLEASNC 809 (1099)
Q Consensus 801 L~~L~i~~c 809 (1099)
|+.|+++++
T Consensus 361 l~~l~l~~n 369 (727)
T 4b8c_D 361 RRFIEINTD 369 (727)
T ss_dssp ---------
T ss_pred cceeEeecc
Confidence 777777766
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=7.6e-13 Score=130.09 Aligned_cols=103 Identities=26% Similarity=0.291 Sum_probs=53.1
Q ss_pred ccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCC-CCC-CCCCCCCCEEeccCCCCcccc--cccCCCCCCC
Q 001326 683 LGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFA-LPP-LSTLSSLRTLTLSGCGIIEIS--QDICCLSSLE 758 (1099)
Q Consensus 683 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~-l~~-l~~l~~L~~L~Ls~~~l~~l~--~~~~~l~sL~ 758 (1099)
+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+.. +|. +..+++|++|++++|.+..++ ..+..+++|+
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 33333444444444433333 333444444444444444433 222 223455555555555555543 4566666677
Q ss_pred EEEccCCCCccccc----cccCCCCCCEEeec
Q 001326 759 SLNLAENNFESLPS----SISQLSCLRRLCLR 786 (1099)
Q Consensus 759 ~L~L~~n~l~~lp~----~l~~l~~L~~L~L~ 786 (1099)
+|++++|.++.+|. .+..+++|+.|+++
T Consensus 117 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777776666554 45666777776665
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=2.2e-12 Score=126.78 Aligned_cols=81 Identities=20% Similarity=0.177 Sum_probs=34.9
Q ss_pred CCCcEEEeCCcccc-cccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcc-cCcccccCCCCcEEE
Q 001326 592 PNLKILNLGFCKRL-KRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKE-LPSSIENLEGLKELQ 669 (1099)
Q Consensus 592 ~~L~~L~L~~~~~~-~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~ 669 (1099)
++|+.|++++|.+. +.+|..+..+++|+.|++++|..... ..+..+++|++|++++|.++. +|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555444 34444444444444444444433322 333444444444444444443 333333344444444
Q ss_pred ccCCC
Q 001326 670 LMCCS 674 (1099)
Q Consensus 670 L~~~~ 674 (1099)
+++|.
T Consensus 95 ls~N~ 99 (149)
T 2je0_A 95 LSGNK 99 (149)
T ss_dssp CTTSC
T ss_pred CCCCc
Confidence 44443
No 135
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.29 E-value=9.3e-11 Score=135.19 Aligned_cols=303 Identities=14% Similarity=0.077 Sum_probs=174.8
Q ss_pred CCCCccccchhhHHHHHHhhcC----CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC-ceeEEEEeccccccCCCCHH
Q 001326 29 SDFKGLVGLSSRIEKLISLLCV----GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF-EGRCFVSNVRVESENGHRLV 103 (1099)
Q Consensus 29 ~~~~~~vGr~~~~~~l~~~l~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~ 103 (1099)
..++.++||+.+++++..++.. ..+..+.+.|+|++|+||||+|+++++...... ...+++. . . ......
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~-~---~-~~~~~~ 88 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN-G---F-IYRNFT 88 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE-T---T-TCCSHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe-C---c-cCCCHH
Confidence 3457899999999999998864 222344889999999999999999999876542 2234443 1 1 334456
Q ss_pred HHHHHHHHHHhcccccccC-CC-hhHHHHHHhc--CCeEEEEEeCCCCh--hHHHHHhcCCCCCC----CCCeEEEEeCC
Q 001326 104 YLRERVLSEIFEENIKIET-PC-LPEYIGERLR--RMKVLIVLDDVNKV--GQLKYLAGGIDRFG----PGSRIIITTRD 173 (1099)
Q Consensus 104 ~l~~~ll~~l~~~~~~~~~-~~-~~~~l~~~L~--~kr~LlVLDdv~~~--~~~~~l~~~~~~~~----~gsrIiiTTR~ 173 (1099)
.+...++..+......... .. ....+.+.+. +++.+|||||++.. ..+..+........ .+..||+||++
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 6777776665432111111 11 3334444443 56899999999764 44555544433211 36678888877
Q ss_pred cccccccC-----CCCcceEecCCCCHHHHHHHHhhhhcC---CCCCChhHHHHHHHHHHHh---------CCCchHHHH
Q 001326 174 KWILDNFG-----VHSSNIYEVNGLEYDEARELFCNYAFK---ENHCPDDLLALSKCVLKYA---------NGNPLALTV 236 (1099)
Q Consensus 174 ~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~---~~~~~~~~~~~~~~i~~~~---------~GlPLal~~ 236 (1099)
........ .-....+.+++++.++..+++...+.. .... -.+..+.+++++ .|.|..+..
T Consensus 169 ~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~ 245 (389)
T 1fnn_A 169 DAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY---SEDILQMIADITGAQTPLDTNRGDARLAID 245 (389)
T ss_dssp THHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS---CHHHHHHHHHHHSBSSTTCTTSCCHHHHHH
T ss_pred chHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 64322211 001116999999999999999887532 2212 235667788888 798765443
Q ss_pred Hhhh-cC-----C---CCHHHHHHHHHHHhcCCCchhHHHHhhcccCCChhhhhHHhhhcccc---cc--chHhHHH---
Q 001326 237 LGSF-FH-----Q---KSKPDWEKALEKINRISDPDIYDVLKISYNDLRPEEKSIFLDIACFV---VG--EEKDFVT--- 299 (1099)
Q Consensus 237 lg~~-L~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~---~~--~~~~~~~--- 299 (1099)
+... .. + -+.+....++.... ...+.. .+..|+++++.++..++.+. .+ .....+.
T Consensus 246 ~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~---~~~~~~----~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~ 318 (389)
T 1fnn_A 246 ILYRSAYAAQQNGRKHIAPEDVRKSSKEVL---FGISEE----VLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESY 318 (389)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHHS---CCCCHH----HHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHh---hhhHHH----HHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHH
Confidence 3222 11 1 12333333433332 222222 34668888888888888654 22 2222221
Q ss_pred -HHhcC---CCc----hhhhHHHHhhccceEEecC-------Ce---E----EehHHHHHHHHHHHhhh
Q 001326 300 -SILED---PNI----AHYGLSVLIERSLVTISKF-------NK---I----EMHDLLQEMGREIVRQE 346 (1099)
Q Consensus 300 -~~l~~---~~~----~~~~l~~L~~~sLi~~~~~-------~~---~----~mHdll~~~~~~i~~~~ 346 (1099)
.+... ... ....++.|.++++|..... ++ + ..|++++.+...+..++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 319 KIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 11111 111 3456889999999988543 22 1 14566666555555443
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.29 E-value=2.6e-12 Score=144.57 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=69.1
Q ss_pred CCCCceeecCCCCCccCCc-cccCCCCCcEEEccCCCCCCCCC--CCCCCCCC-EEeccCCCCccccc-ccCCCCCCCEE
Q 001326 686 LKSLVVLDANRSAILQLPS-SIADLNKLRELCLSGCRGFALPP--LSTLSSLR-TLTLSGCGIIEISQ-DICCLSSLESL 760 (1099)
Q Consensus 686 l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~-~L~Ls~~~l~~l~~-~~~~l~sL~~L 760 (1099)
+++|+.+++++|.+..+|. .|.++++|+.|+|.+| +..++. |.++++|+ .|++.+ .+..++. .|.++++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 6777777777777777754 5677777777777776 555544 67777777 777777 6666653 47777888888
Q ss_pred EccCCCCccccc-cccCCCCCCEEe
Q 001326 761 NLAENNFESLPS-SISQLSCLRRLC 784 (1099)
Q Consensus 761 ~L~~n~l~~lp~-~l~~l~~L~~L~ 784 (1099)
++++|+++.++. .+.++++|+.|+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 887777777764 566777777765
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=3.5e-12 Score=129.18 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=25.7
Q ss_pred CCCCCEEeccCCCCccccc--ccCCCCCCCEEEccCCCCcccccc----ccCCCCCCEEeecCC
Q 001326 731 LSSLRTLTLSGCGIIEISQ--DICCLSSLESLNLAENNFESLPSS----ISQLSCLRRLCLRNC 788 (1099)
Q Consensus 731 l~~L~~L~Ls~~~l~~l~~--~~~~l~sL~~L~L~~n~l~~lp~~----l~~l~~L~~L~L~~c 788 (1099)
+++|++|++++|.+..+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 3344444444444444333 344444444444444444444432 444444444444443
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=2.5e-11 Score=124.78 Aligned_cols=123 Identities=28% Similarity=0.368 Sum_probs=61.1
Q ss_pred CEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccc-cccCCCCCceeecCCCCCccC-CccccCCCCCcEEEccCC
Q 001326 643 EKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPE-SLGNLKSLVVLDANRSAILQL-PSSIADLNKLRELCLSGC 720 (1099)
Q Consensus 643 ~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~ 720 (1099)
+.++++++.++.+|..+.. +|+.|++++|.+.+..+. .+..+++|++|++++|.+..+ |..+..+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----------- 77 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA----------- 77 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC-----------
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc-----------
Confidence 4566666666666654432 555555555554433332 244555555555555555444 3344444
Q ss_pred CCCCCCCCCCCCCCCEEeccCCCCcccccc-cCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCC
Q 001326 721 RGFALPPLSTLSSLRTLTLSGCGIIEISQD-ICCLSSLESLNLAENNFESL-PSSISQLSCLRRLCLRNCN 789 (1099)
Q Consensus 721 ~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~-~~~l~sL~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~ 789 (1099)
++|++|+|++|.+..++.. +..+++|++|+|++|+++.+ |..+..+++|+.|+|++|+
T Consensus 78 -----------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 78 -----------SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp -----------TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred -----------ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 4444444444444443332 44455555555555555533 3445555555555555544
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=3.4e-12 Score=129.34 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=91.4
Q ss_pred hcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccc-cCCCCCcE
Q 001326 636 LEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSI-ADLNKLRE 714 (1099)
Q Consensus 636 l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~ 714 (1099)
+..+.+|+.|++++|.++.+|......++|+.|++++|.+.+. ..+..+++|+.|++++|.+..+|..+ ..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3445566666666666666654333333777777777765543 45667777777777777777766443 77777777
Q ss_pred EEccCCCCCCCCC---CCCCCCCCEEeccCCCCcccccc----cCCCCCCCEEEccCCCCcc
Q 001326 715 LCLSGCRGFALPP---LSTLSSLRTLTLSGCGIIEISQD----ICCLSSLESLNLAENNFES 769 (1099)
Q Consensus 715 L~L~~~~~~~l~~---l~~l~~L~~L~Ls~~~l~~l~~~----~~~l~sL~~L~L~~n~l~~ 769 (1099)
|++++|.+..+|. +..+++|+.|++++|.+..+|.. +..+++|+.|++++|.+..
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 7777777766654 66778888888888888877764 7778888888888887653
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=3.8e-11 Score=123.35 Aligned_cols=127 Identities=22% Similarity=0.185 Sum_probs=81.1
Q ss_pred cEEEecCcCCcccCccccCCCCCcEEEeCCccccccccc-ccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCC
Q 001326 572 VELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVST-GICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRS 650 (1099)
Q Consensus 572 ~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~ 650 (1099)
+.++++++.++.+|..+.. +|+.|++++|.+....+. .+..+++|++|++++|...+..|..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777778888776543 788888888776554443 3666777777777777666666666666666666666666
Q ss_pred CCcccCcc-cccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCc
Q 001326 651 GIKELPSS-IENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAIL 700 (1099)
Q Consensus 651 ~l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~ 700 (1099)
.++.++.. +.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 66655432 555666666666666655555555555555555555555443
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=5.4e-11 Score=122.26 Aligned_cols=101 Identities=25% Similarity=0.289 Sum_probs=54.1
Q ss_pred CceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCccccc-ccCCCCCCCEEEccCC
Q 001326 689 LVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQ-DICCLSSLESLNLAEN 765 (1099)
Q Consensus 689 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~-~~~~l~sL~~L~L~~n 765 (1099)
|+.|++++|.+..+|..+..+++|+.|+|++|.+..+++ +.++++|++|+|++|.+..++. .+..+++|+.|+|++|
T Consensus 33 l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence 344444444444444444444445555555554444433 4555555555555555555443 3556666666666666
Q ss_pred CCcccccc-ccCCCCCCEEeecCCC
Q 001326 766 NFESLPSS-ISQLSCLRRLCLRNCN 789 (1099)
Q Consensus 766 ~l~~lp~~-l~~l~~L~~L~L~~c~ 789 (1099)
.++.+|.. +..+++|+.|+|++|+
T Consensus 113 ~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 113 DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCeeChhhhhcCccccEEEeCCCC
Confidence 66655543 5556666666666654
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.23 E-value=6.9e-11 Score=121.41 Aligned_cols=123 Identities=30% Similarity=0.406 Sum_probs=108.1
Q ss_pred CEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCC-ccccCCCCCcEEEccCCC
Q 001326 643 EKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLP-SSIADLNKLRELCLSGCR 721 (1099)
Q Consensus 643 ~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~ 721 (1099)
+.++++++.++.+|..+. ++|+.|++++|.+. .+|..+..+++|+.|++++|.+..++ ..+.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 578999999999997654 68999999999865 67788999999999999999999886 468899999999999999
Q ss_pred CCCCCC--CCCCCCCCEEeccCCCCcccccc-cCCCCCCCEEEccCCCCc
Q 001326 722 GFALPP--LSTLSSLRTLTLSGCGIIEISQD-ICCLSSLESLNLAENNFE 768 (1099)
Q Consensus 722 ~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~~-~~~l~sL~~L~L~~n~l~ 768 (1099)
+..+++ +..+++|+.|+|++|.+..+|.. +..+++|+.|+|++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 888876 88899999999999999988875 788999999999999875
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.21 E-value=1.2e-10 Score=118.04 Aligned_cols=125 Identities=20% Similarity=0.349 Sum_probs=69.1
Q ss_pred CEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCC
Q 001326 643 EKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRG 722 (1099)
Q Consensus 643 ~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~ 722 (1099)
+.+++++++++.+|..+. ++|+.|++++|...+..+..+..+++|++|++++|.+..+|...
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------------- 71 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV---------------- 71 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT----------------
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH----------------
Confidence 456666666666664332 45666666665544433334455555555555555554443321
Q ss_pred CCCCCCCCCCCCCEEeccCCCCcccccc-cCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCC
Q 001326 723 FALPPLSTLSSLRTLTLSGCGIIEISQD-ICCLSSLESLNLAENNFESLPSS-ISQLSCLRRLCLRNCNM 790 (1099)
Q Consensus 723 ~~l~~l~~l~~L~~L~Ls~~~l~~l~~~-~~~l~sL~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~~ 790 (1099)
+..+++|++|++++|.+..++.. +..+++|+.|++++|.++.+|.. +..+++|+.|++++|+.
T Consensus 72 -----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 72 -----FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp -----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -----ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 34455555555555555554443 45566666666666666666544 35566666666666643
No 144
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.18 E-value=1.6e-10 Score=123.71 Aligned_cols=200 Identities=15% Similarity=0.116 Sum_probs=117.7
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRE 107 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 107 (1099)
|...+.++||+..++.+..++..+. ..+.+.|+|++|+||||+|+++++.+...+.... .. ....... .
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~-~~--------~~~~~~~-~ 87 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-TP--------CGVCDNC-R 87 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS-SC--------CSCSHHH-H
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-CC--------CcccHHH-H
Confidence 4455789999999999999986432 2347889999999999999999987754431100 00 0000000 0
Q ss_pred HHHHHHhccccccc-CC-Ch---hHHHHHH-----hcCCeEEEEEeCCCC--hhHHHHHhcCCCCCCCCCeEEEEeCCcc
Q 001326 108 RVLSEIFEENIKIE-TP-CL---PEYIGER-----LRRMKVLIVLDDVNK--VGQLKYLAGGIDRFGPGSRIIITTRDKW 175 (1099)
Q Consensus 108 ~ll~~l~~~~~~~~-~~-~~---~~~l~~~-----L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~~~ 175 (1099)
.+.......-.... .. .. ...+.+. ..+++.+||+||++. ...++.+...+.....+.++|+||+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp HHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred HHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 00000000000000 00 01 1111111 135679999999965 3455555544433356778888887654
Q ss_pred cccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhh
Q 001326 176 ILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLGSF 240 (1099)
Q Consensus 176 v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~ 240 (1099)
.....-......+++++++.+|..+++...+....... -.+..+.++++++|.|..+..+...
T Consensus 168 ~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 168 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 32210011123799999999999999988775432211 1255678999999999988766543
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=3.4e-13 Score=139.64 Aligned_cols=129 Identities=25% Similarity=0.300 Sum_probs=78.5
Q ss_pred ccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCC
Q 001326 654 ELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSS 733 (1099)
Q Consensus 654 ~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~ 733 (1099)
.+|..+..+++|+.|++++|...+ +| .+..+++|+.|++++|.+..+|..+..+++|+.|++++|.+..+|.+..+++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~ 116 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVN 116 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCC
Confidence 344455555555555555554333 34 4555555666666666666666555555666666666666665555566667
Q ss_pred CCEEeccCCCCccccc--ccCCCCCCCEEEccCCCCccccc-----------cccCCCCCCEEe
Q 001326 734 LRTLTLSGCGIIEISQ--DICCLSSLESLNLAENNFESLPS-----------SISQLSCLRRLC 784 (1099)
Q Consensus 734 L~~L~Ls~~~l~~l~~--~~~~l~sL~~L~L~~n~l~~lp~-----------~l~~l~~L~~L~ 784 (1099)
|+.|++++|.+..++. .+..+++|++|++++|.+...+. .+..+++|+.|+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 7777777777776554 56777777777777777653321 156677777765
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=4e-10 Score=114.03 Aligned_cols=101 Identities=24% Similarity=0.227 Sum_probs=51.5
Q ss_pred cEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCC
Q 001326 572 VELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSG 651 (1099)
Q Consensus 572 ~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 651 (1099)
+.++++++.+..+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 45666666777766543 2566777777666554433444555555555555554443333334444455555555544
Q ss_pred CcccCcc-cccCCCCcEEEccCCC
Q 001326 652 IKELPSS-IENLEGLKELQLMCCS 674 (1099)
Q Consensus 652 l~~lp~~-l~~l~~L~~L~L~~~~ 674 (1099)
++.+|.. +..+++|+.|++++|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQ 111 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHHHhhCCcccCEEECcCCc
Confidence 4444332 2334444444444443
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=3.8e-13 Score=139.29 Aligned_cols=132 Identities=22% Similarity=0.251 Sum_probs=88.7
Q ss_pred cchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCC
Q 001326 632 FPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNK 711 (1099)
Q Consensus 632 ~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 711 (1099)
+|..+..+++|++|++++|.++.+| .+..+++|+.|++++|... .+|..+..+++|+.|++++|.+..+| .+..+++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVN 116 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCC
Confidence 3446666666777777776666666 6666777777777776544 45555566667777777777776665 4666777
Q ss_pred CcEEEccCCCCCCCCC---CCCCCCCCEEeccCCCCcccccc-----------cCCCCCCCEEEccCCCCc
Q 001326 712 LRELCLSGCRGFALPP---LSTLSSLRTLTLSGCGIIEISQD-----------ICCLSSLESLNLAENNFE 768 (1099)
Q Consensus 712 L~~L~L~~~~~~~l~~---l~~l~~L~~L~Ls~~~l~~l~~~-----------~~~l~sL~~L~L~~n~l~ 768 (1099)
|+.|++++|.+..++. +..+++|++|++++|.+...++. +..+++|+.|+ +|.++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7777777777665543 66778888888888877653222 67788888886 55443
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=1.1e-10 Score=131.23 Aligned_cols=255 Identities=12% Similarity=-0.001 Sum_probs=149.1
Q ss_pred CCCeeEEEeecCCCC--cCCCCCCCCCceEEECCCCCccccccc-ccc--------cCCccEEeccCCCCCCcCCC--CC
Q 001326 432 PDGLRYLHWHECPLK--SLPSNFDLENLIELDLPYSKVEQLWEG-EKE--------AFKLKSIDLHQSHNLTRIPK--QS 498 (1099)
Q Consensus 432 ~~~Lr~L~l~~~~l~--~lp~~~~l~~L~~L~L~~n~i~~l~~~-~~~--------l~~L~~L~Ls~~~~l~~~~~--~~ 498 (1099)
..+|+.|++++|.+. ..+... ++.+..+.+..+ .+|.. +.. +.+|+.|+|.+ .++.+++ |.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~-~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT-YPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS-SGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCcccc-cccccccccccc---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhh
Confidence 567888888888877 333221 222445555555 33332 345 78888888887 3445554 68
Q ss_pred CCCCccEEEeeCCCCCCccCccccCCCCCCEEEcCCCCC---cccCCCCC--CCCCCc-EEEccCCcCCCCCCCCCCCcc
Q 001326 499 EAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSLRDCIS---LSCFPRNI--HFRSPV-KIDFSGCVNLTEFPHISGNVV 572 (1099)
Q Consensus 499 ~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~---l~~lp~~~--~l~~L~-~L~l~~~~~l~~l~~~~~~L~ 572 (1099)
++++|+.|++.+|......+..|..+.++..+.+..... ...+.... .+..|+ .+.+...
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~-------------- 187 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM-------------- 187 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT--------------
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC--------------
Confidence 888888888888776655566677766666665543110 11111100 222222 2222111
Q ss_pred EEEecCcCCcccCccc----cCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEcc
Q 001326 573 ELKLFNTPIEEVPSSI----ESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALD 648 (1099)
Q Consensus 573 ~L~l~~~~i~~lp~~i----~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 648 (1099)
..++..+ ....++..+.+.+.-...........+++|+.|++.+|.....-...|..+.+|+.|++.
T Consensus 188 ---------~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 188 ---------GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp ---------CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ---------CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 1122111 124455555555432111111111236677777777766555555667778888888887
Q ss_pred CCCCcccCc-ccccCCCCc-EEEccCCCCCCcccccccCCCCCceeecCCCCCccCCc-cccCCCCCcEEEc
Q 001326 649 RSGIKELPS-SIENLEGLK-ELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPS-SIADLNKLRELCL 717 (1099)
Q Consensus 649 ~~~l~~lp~-~l~~l~~L~-~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L 717 (1099)
+| ++.++. .|.++++|+ .|.+.+ .....-+..|.++++|+.++++.+.+..++. .|.++++|+.|+.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 76 666654 567788888 888877 4444445678888888888888888887754 7788888888763
No 149
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.09 E-value=9.3e-10 Score=115.78 Aligned_cols=188 Identities=13% Similarity=0.089 Sum_probs=115.4
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC-ceeEEEEeccccccCCCCHHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF-EGRCFVSNVRVESENGHRLVYL 105 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l 105 (1099)
.|.....++|++..++++.+++.... .+.+.|+|++|+|||++|+++++.+.... .......+. + ...+...+
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~---~-~~~~~~~~ 85 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA---S-DERGIDVV 85 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET---T-CTTCHHHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc---c-cccChHHH
Confidence 34556789999999999999997542 23388999999999999999998764332 222222111 1 22233222
Q ss_pred HHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCccccc-ccCC
Q 001326 106 RERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDKWILD-NFGV 182 (1099)
Q Consensus 106 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~-~~~~ 182 (1099)
... +........ ...+++.+||+||++.. ...+.+...+.....+.++|+||+...... ...
T Consensus 86 ~~~-~~~~~~~~~-------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~- 150 (226)
T 2chg_A 86 RHK-IKEFARTAP-------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ- 150 (226)
T ss_dssp HHH-HHHHHTSCC-------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-
T ss_pred HHH-HHHHhcccC-------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHH-
Confidence 222 111111100 01257889999999754 334444443333456778898887654221 111
Q ss_pred CCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001326 183 HSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVL 237 (1099)
Q Consensus 183 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 237 (1099)
.....+++++++.++..+++...+......- -.+..+.+++.++|.|..+..+
T Consensus 151 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCceeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 1112789999999999999988774322111 1245667889999999865443
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.05 E-value=1.3e-08 Score=117.36 Aligned_cols=66 Identities=11% Similarity=0.040 Sum_probs=40.7
Q ss_pred eeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCCC--CCCCceEEECC
Q 001326 387 REIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSNF--DLENLIELDLP 463 (1099)
Q Consensus 387 ~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~ 463 (1099)
....+...+|.++.+|+.+.+..+ ...+....+..+.+|+.+++..+ ++.++... .+.+|+.+.++
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~----------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST----------VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT----------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC----------ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 456788899999999999888532 23445555555566666666533 45554433 45555555444
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.00 E-value=2.4e-08 Score=114.58 Aligned_cols=80 Identities=9% Similarity=0.059 Sum_probs=40.2
Q ss_pred cccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCccccc-ccCCCCCCCEEEccCCCCccccc-cccCCC-C
Q 001326 705 SIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQ-DICCLSSLESLNLAENNFESLPS-SISQLS-C 779 (1099)
Q Consensus 705 ~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~-~~~~l~sL~~L~L~~n~l~~lp~-~l~~l~-~ 779 (1099)
.|.++++|+.+.|.+ .+..++. +.++++|+.+.|..+ +..++. .|.++ +|+.|++.+|.+..++. .+.+++ +
T Consensus 295 aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~ 371 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDD 371 (401)
T ss_dssp TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTT
T ss_pred HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCC
Confidence 344444455554442 2333322 555556666666333 444433 35556 66666666666555442 344443 5
Q ss_pred CCEEeecC
Q 001326 780 LRRLCLRN 787 (1099)
Q Consensus 780 L~~L~L~~ 787 (1099)
++.|.+..
T Consensus 372 l~~l~vp~ 379 (401)
T 4fdw_A 372 ITVIRVPA 379 (401)
T ss_dssp CCEEEECG
T ss_pred ccEEEeCH
Confidence 56666554
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=1.7e-08 Score=115.90 Aligned_cols=210 Identities=16% Similarity=0.102 Sum_probs=91.9
Q ss_pred CeeEEEeecCCCCcCCCCC-CCCCceEEECCCCCcccccc-cccccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCC
Q 001326 434 GLRYLHWHECPLKSLPSNF-DLENLIELDLPYSKVEQLWE-GEKEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNC 511 (1099)
Q Consensus 434 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~ 511 (1099)
+|+.+.+..+ ++.++... .-.+|+.+.+.. .++.+.. .+..+.+|+.+++++|.........-...+|+.+.|..+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~ 213 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT 213 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc
Confidence 3555554433 44444332 223455555553 4444442 234555555555555442222222122455666666532
Q ss_pred CCCCcc-CccccCCCCCCEEEcCCCCCcccCCCCC-CCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccC-ccc
Q 001326 512 KNLLYI-PSHIQNFNNLSMLSLRDCISLSCFPRNI-HFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVP-SSI 588 (1099)
Q Consensus 512 ~~l~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp-~~i 588 (1099)
+..+ ...|.++++|+.+.+..+ +..++... .-.+ |+.+.+. +.+..++ ..|
T Consensus 214 --l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~---------------------L~~i~lp-~~i~~I~~~aF 267 (401)
T 4fdw_A 214 --LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESG---------------------ITTVKLP-NGVTNIASRAF 267 (401)
T ss_dssp --CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCC---------------------CSEEEEE-TTCCEECTTTT
T ss_pred --hheehhhHhhCCCCCCEEecCCC--ccCccccccccCC---------------------ccEEEeC-CCccEEChhHh
Confidence 2222 335566666666666542 22222211 1122 2333331 2233332 335
Q ss_pred cCCCCCcEEEeCCcccc-----cccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccC-cccccC
Q 001326 589 ESLPNLKILNLGFCKRL-----KRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELP-SSIENL 662 (1099)
Q Consensus 589 ~~l~~L~~L~L~~~~~~-----~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~~l~~l 662 (1099)
..+++|+.+++.++... ...+..|.++++|+.+.+.+ .....-...|.++.+|+.+.|..+ ++.++ ..|.++
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~ 345 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT 345 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS
T ss_pred hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC
Confidence 56666666666655432 12233455555555555542 122222234444555555555332 33332 233444
Q ss_pred CCCcEEEccCCC
Q 001326 663 EGLKELQLMCCS 674 (1099)
Q Consensus 663 ~~L~~L~L~~~~ 674 (1099)
+|+.+.+.+|.
T Consensus 346 -~L~~l~l~~n~ 356 (401)
T 4fdw_A 346 -GIKEVKVEGTT 356 (401)
T ss_dssp -CCCEEEECCSS
T ss_pred -CCCEEEEcCCC
Confidence 45555544443
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=2.4e-09 Score=107.72 Aligned_cols=98 Identities=21% Similarity=0.376 Sum_probs=73.7
Q ss_pred ceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCcccccc-cCCCCCCCEEEccCCC
Q 001326 690 VVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQD-ICCLSSLESLNLAENN 766 (1099)
Q Consensus 690 ~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~~-~~~l~sL~~L~L~~n~ 766 (1099)
+.++++++.+..+|..+. ++|+.|+|++|.+..+++ +..+++|++|+|++|.+..+|.. +..+++|+.|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 566777777777776553 677777777777776654 67778888888888888877765 5778888888888888
Q ss_pred Ccccccc-ccCCCCCCEEeecCCC
Q 001326 767 FESLPSS-ISQLSCLRRLCLRNCN 789 (1099)
Q Consensus 767 l~~lp~~-l~~l~~L~~L~L~~c~ 789 (1099)
++.+|.. +..+++|+.|+|++|+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 8877765 7778888888888864
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=2.8e-09 Score=106.87 Aligned_cols=100 Identities=22% Similarity=0.331 Sum_probs=75.6
Q ss_pred CceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCcccccc-cCCCCCCCEEEccCC
Q 001326 689 LVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQD-ICCLSSLESLNLAEN 765 (1099)
Q Consensus 689 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~~-~~~l~sL~~L~L~~n 765 (1099)
.+.++++++.+..+|..+ .++|+.|+|++|.+..+++ +..+++|++|+|++|.+..++.. +..+++|+.|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456777777777777655 3777888888887777654 67788888888888888877765 577888888888888
Q ss_pred CCcccccc-ccCCCCCCEEeecCCCC
Q 001326 766 NFESLPSS-ISQLSCLRRLCLRNCNM 790 (1099)
Q Consensus 766 ~l~~lp~~-l~~l~~L~~L~L~~c~~ 790 (1099)
+++.+|.. +..+++|+.|+|++|+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 88877754 77788888888888753
No 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.95 E-value=5.1e-09 Score=117.13 Aligned_cols=188 Identities=15% Similarity=0.197 Sum_probs=114.0
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc-Cce-eEEEEeccccccCCCCHHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE-FEG-RCFVSNVRVESENGHRLVYL 105 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~~l 105 (1099)
|...+.++|++..++.+.+++..+. .+.+.|+|++|+||||+|+++++.+... +.. .+++. . + ...+...+
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~---~-~~~~~~~i 89 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN-A---S-DDRGIDVV 89 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC-T---T-SCCSHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec-C---c-cccChHHH
Confidence 4455789999999999999987543 2238899999999999999999976432 221 22221 1 1 22233222
Q ss_pred HHHHHHHHhcccccccCCChhHHHHHHh-cCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCccc-ccccC
Q 001326 106 RERVLSEIFEENIKIETPCLPEYIGERL-RRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDKWI-LDNFG 181 (1099)
Q Consensus 106 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v-~~~~~ 181 (1099)
++++..+..... .+ .+++.+||+||++.. ...+.+...+....+++++|+||+...- .....
T Consensus 90 -~~~~~~~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~ 155 (323)
T 1sxj_B 90 -RNQIKHFAQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ 155 (323)
T ss_dssp -HTHHHHHHHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -HHHHHHHHhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH
Confidence 222222221100 11 346889999999764 3333343333333466788888876432 11111
Q ss_pred CCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH-HHHHhh
Q 001326 182 VHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLA-LTVLGS 239 (1099)
Q Consensus 182 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa-l~~lg~ 239 (1099)
.....+++.+++.++..+++...+......- -.+....++++++|.|.. +..+..
T Consensus 156 -sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 156 -SQCAILRYSKLSDEDVLKRLLQIIKLEDVKY--TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp -TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -hhceEEeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1122799999999999999988764322111 124567889999999954 444433
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.92 E-value=5.4e-09 Score=105.19 Aligned_cols=107 Identities=19% Similarity=0.234 Sum_probs=64.5
Q ss_pred CEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCC
Q 001326 643 EKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRG 722 (1099)
Q Consensus 643 ~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~ 722 (1099)
+.++++++.++.+|..+. ++|+.|++++|.+.+..|..+..+++|+.|++++|.+..+|...
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~---------------- 76 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV---------------- 76 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----------------
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhH----------------
Confidence 466677777766666543 55666666655555444444545555555544444444443321
Q ss_pred CCCCCCCCCCCCCEEeccCCCCcccccc-cCCCCCCCEEEccCCCCccccc
Q 001326 723 FALPPLSTLSSLRTLTLSGCGIIEISQD-ICCLSSLESLNLAENNFESLPS 772 (1099)
Q Consensus 723 ~~l~~l~~l~~L~~L~Ls~~~l~~l~~~-~~~l~sL~~L~L~~n~l~~lp~ 772 (1099)
+..+++|+.|+|++|.+..+|.. +..+++|+.|+|++|.+...+.
T Consensus 77 -----~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 77 -----FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp -----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred -----hCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 45566667777777777766655 6777788888888887775554
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.90 E-value=6.6e-09 Score=104.13 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=62.6
Q ss_pred CCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCC
Q 001326 642 LEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCR 721 (1099)
Q Consensus 642 L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~ 721 (1099)
.+.+++++|.++.+|..+. ++|+.|++++|.+.+..|..+..+++|++|++++|.+..+|...
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--------------- 73 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV--------------- 73 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT---------------
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhh---------------
Confidence 3566677777766665442 55555555555555444444444444444444444444443221
Q ss_pred CCCCCCCCCCCCCCEEeccCCCCcccccc-cCCCCCCCEEEccCCCCccc
Q 001326 722 GFALPPLSTLSSLRTLTLSGCGIIEISQD-ICCLSSLESLNLAENNFESL 770 (1099)
Q Consensus 722 ~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~-~~~l~sL~~L~L~~n~l~~l 770 (1099)
+..+++|++|+|++|.+..++.. +..+++|+.|+|++|.+...
T Consensus 74 ------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 74 ------FDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp ------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ------ccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 45666677777777777766654 67777888888888876633
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.83 E-value=2.4e-07 Score=106.53 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=23.3
Q ss_pred CCCCceEEECCCCCccccccc-ccccCCccEEeccCCCCCCcCCC--CCCCCCccEEEe
Q 001326 453 DLENLIELDLPYSKVEQLWEG-EKEAFKLKSIDLHQSHNLTRIPK--QSEAPNLERINL 508 (1099)
Q Consensus 453 ~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~~~--~~~l~~L~~L~L 508 (1099)
.+.+|+.+.|+. .++.+.+. +.++.+|+.+++..+ ++.+++ +..+.+|+.+.+
T Consensus 69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~ 124 (394)
T 4fs7_A 69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILL 124 (394)
T ss_dssp TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcc
Confidence 344555555542 24444332 344555555555433 222322 344445544443
No 159
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.78 E-value=1.5e-07 Score=105.25 Aligned_cols=259 Identities=13% Similarity=0.048 Sum_probs=146.9
Q ss_pred CCCCCCccccchhhHHHHHHhhcCC---CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVG---FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLV 103 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 103 (1099)
.|...+.++|++..++++..++... ....+.|.|+|++|+|||++|+++++.....| .++. .. ......
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~----~~~~~~ 78 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GP----AIEKPG 78 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TT----TCCSHH
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-cc----ccCChH
Confidence 3446678999999999988887521 12345788999999999999999999775332 2221 11 111111
Q ss_pred HHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCC------------------CCC
Q 001326 104 YLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDR------------------FGP 163 (1099)
Q Consensus 104 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~------------------~~~ 163 (1099)
.+ ... +... ..+..+|+|||++... ..+.+...+.. ..+
T Consensus 79 ~l----~~~----------------l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 79 DL----AAI----------------LANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp HH----HHH----------------HTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred HH----HHH----------------HHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 11 111 1110 1345689999997653 22333211110 013
Q ss_pred CCeEEEEeCCcccc-cccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhcC
Q 001326 164 GSRIIITTRDKWIL-DNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLGSFFH 242 (1099)
Q Consensus 164 gsrIiiTTR~~~v~-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~ 242 (1099)
+.++|.||...... ...-..-..++.+.+++.+|..+++...+...... --.+....+++++.|.|-.+..+...+.
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 45677776644321 11100001279999999999999998877543221 1135667889999999988766544332
Q ss_pred C---------CCHHHHHHHHHHHhcCCCchhHHHHhhcccCCChhhhhHHhhhccccccc--hHhHHHHHhcCCCc-hhh
Q 001326 243 Q---------KSKPDWEKALEKINRISDPDIYDVLKISYNDLRPEEKSIFLDIACFVVGE--EKDFVTSILEDPNI-AHY 310 (1099)
Q Consensus 243 ~---------~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~~~~~l~~~~~-~~~ 310 (1099)
. -+.+....++.. +...+..+++.++..+..++....+. ....+.+.+.-.-. ...
T Consensus 216 ~~a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~ 283 (324)
T 1hqc_A 216 DFAQVAGEEVITRERALEALAA------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEE 283 (324)
T ss_dssp TTSTTTSCSCCCHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHH------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHH
Confidence 1 123333333332 22345667888888887766554433 34445554422111 222
Q ss_pred hHHH-HhhccceEEecCCe
Q 001326 311 GLSV-LIERSLVTISKFNK 328 (1099)
Q Consensus 311 ~l~~-L~~~sLi~~~~~~~ 328 (1099)
.++. +++.++|.....++
T Consensus 284 ~l~~~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 284 VHEPYLIRQGLLKRTPRGR 302 (324)
T ss_dssp HTHHHHHHTTSEEEETTEE
T ss_pred HHhHHHHHhcchhcCCccc
Confidence 2333 77889998765444
No 160
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=3.3e-08 Score=110.68 Aligned_cols=188 Identities=17% Similarity=0.157 Sum_probs=112.8
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC-ceeEEEEeccccccCCCCHHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF-EGRCFVSNVRVESENGHRLVYL 105 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l 105 (1099)
.|...+.++|++..++.+..++..+. ...+.|+|++|+||||+|+++++.+.... ...+...+. + ...+...+
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~---~-~~~~~~~~ 93 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA---S-DERGINVI 93 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET---T-CHHHHHTT
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec---c-ccCchHHH
Confidence 34556789999999999999987542 23488999999999999999999764332 111111111 1 10011111
Q ss_pred HHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCcccc-cccCC
Q 001326 106 RERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDKWIL-DNFGV 182 (1099)
Q Consensus 106 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~~~~~ 182 (1099)
.. .+.+..... ....+++.++|+||++.. +..+.+...+.....+.++|+||...... ....
T Consensus 94 ~~-~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~- 158 (327)
T 1iqp_A 94 RE-KVKEFARTK-------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ- 158 (327)
T ss_dssp HH-HHHHHHHSC-------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-
T ss_pred HH-HHHHHHhhC-------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH-
Confidence 11 111111000 001256789999999754 34555554444445677888888765321 1110
Q ss_pred CCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001326 183 HSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVL 237 (1099)
Q Consensus 183 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 237 (1099)
.....+++.+++.++..+++...+...... --.+....+++.++|.|..+..+
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHH
Confidence 111278999999999999998876533221 11245677889999999865443
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.74 E-value=6.9e-10 Score=126.21 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=28.1
Q ss_pred CCCCCEEeccCCCCcc-----cccccCCCCCCCEEEccCCCCcc-----ccccccCCCCCCEEeecCCC
Q 001326 731 LSSLRTLTLSGCGIIE-----ISQDICCLSSLESLNLAENNFES-----LPSSISQLSCLRRLCLRNCN 789 (1099)
Q Consensus 731 l~~L~~L~Ls~~~l~~-----l~~~~~~l~sL~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~c~ 789 (1099)
+++|++|+|++|.+.. ++..+..+++|+.|+|++|.++. ++..+...++|++|+|++|+
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 3444444444444442 23334444555555555555542 23334445555555555553
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.62 E-value=7e-08 Score=109.08 Aligned_cols=98 Identities=28% Similarity=0.275 Sum_probs=63.6
Q ss_pred eeecCCC-CCccCCccccCCCCCcEEEccC-CCCCCCCC--CCCCCCCCEEeccCCCCccccc-ccCCCCCCCEEEccCC
Q 001326 691 VLDANRS-AILQLPSSIADLNKLRELCLSG-CRGFALPP--LSTLSSLRTLTLSGCGIIEISQ-DICCLSSLESLNLAEN 765 (1099)
Q Consensus 691 ~L~l~~~-~i~~lp~~~~~l~~L~~L~L~~-~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~-~~~~l~sL~~L~L~~n 765 (1099)
.++++++ .+..+|. +..+++|+.|+|++ |.+..+++ +..+++|+.|+|++|.+..++. .|..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455555 5666666 66666666666664 66666554 6667777777777777776554 4677777777777777
Q ss_pred CCccccccccCCCCCCEEeecCCC
Q 001326 766 NFESLPSSISQLSCLRRLCLRNCN 789 (1099)
Q Consensus 766 ~l~~lp~~l~~l~~L~~L~L~~c~ 789 (1099)
+|+.+|..+.....|+.|+|.+|+
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 777776554443337777777754
No 163
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.59 E-value=3.8e-08 Score=110.82 Aligned_cols=60 Identities=12% Similarity=0.219 Sum_probs=37.5
Q ss_pred CCCCCCEEeccCCCCcc-cccc---cCCCCCCCEEEccCCCCcc-----ccccccCCCCCCEEeecCCC
Q 001326 730 TLSSLRTLTLSGCGIIE-ISQD---ICCLSSLESLNLAENNFES-----LPSSISQLSCLRRLCLRNCN 789 (1099)
Q Consensus 730 ~l~~L~~L~Ls~~~l~~-l~~~---~~~l~sL~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~c~ 789 (1099)
.+|+|+.|+|++|.+.. .+.. ...+++|++|+|+.|.+.. ++..+..+++|+.|+|++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 46677777777777653 1111 1346777777777777663 44445567777777777764
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.59 E-value=3.9e-07 Score=101.52 Aligned_cols=184 Identities=13% Similarity=0.149 Sum_probs=110.9
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc-cCceeEEEEeccccccCCCCHHHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW-EFEGRCFVSNVRVESENGHRLVYLR 106 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~ 106 (1099)
|...+.++|++..++.+.+++..+ ....+.++|++|+|||++|+++++.+.. .+...+...+.. ...+...+.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~ 86 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS----DERGIDVVR 86 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT----STTCTTTSS
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc----cccChHHHH
Confidence 445577999999999999998643 2233889999999999999999997632 222111111111 111111000
Q ss_pred HHHHHHHhcccccccCCChhHHHHHHh-cCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCcc-cccccCC
Q 001326 107 ERVLSEIFEENIKIETPCLPEYIGERL-RRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDKW-ILDNFGV 182 (1099)
Q Consensus 107 ~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~~~ 182 (1099)
. .+...... ..+ .+++.++|+||++.. +..+.+...+....++.++|+||.... +.....
T Consensus 87 ~-~~~~~~~~--------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~- 150 (319)
T 2chq_A 87 H-KIKEFART--------------APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ- 150 (319)
T ss_dssp H-HHHHHHHS--------------CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH-
T ss_pred H-HHHHHHhc--------------CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH-
Confidence 0 01111000 001 256789999999754 345556655555556778888876553 222111
Q ss_pred CCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001326 183 HSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALT 235 (1099)
Q Consensus 183 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 235 (1099)
.....+++.+++.++..+++...+......- -.+....+++.++|.+..+.
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~ 201 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAI 201 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCCCB--CHHHHHHHHHTTTTCHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 1122799999999999999987764332211 12456678888999987554
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.58 E-value=5.1e-06 Score=95.39 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=53.2
Q ss_pred ccCCCCCceeecCCCCCccCC-ccccCCCCCcEEEccCCCCCCCC--CCCCCCCCCEEeccCCCCccccc-ccCCCCCCC
Q 001326 683 LGNLKSLVVLDANRSAILQLP-SSIADLNKLRELCLSGCRGFALP--PLSTLSSLRTLTLSGCGIIEISQ-DICCLSSLE 758 (1099)
Q Consensus 683 l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~Ls~~~l~~l~~-~~~~l~sL~ 758 (1099)
+.++++|+.+.+. +.+..++ ..|.++.+|+.+.|..+ +..+. .+.++.+|+.+.|..+ +..+.. .|.++++|+
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 4445555555553 2233332 34556666666666543 22332 2667777777777543 555544 477888888
Q ss_pred EEEccCCCCccccccccCCCCCCEEeecC
Q 001326 759 SLNLAENNFESLPSSISQLSCLRRLCLRN 787 (1099)
Q Consensus 759 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~ 787 (1099)
.+++.++... + ..+..+.+|+.+.+..
T Consensus 361 ~i~~~~~~~~-~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 361 NIEYSGSRSQ-W-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp EEEESSCHHH-H-HTCBCCCCC-------
T ss_pred EEEECCceee-h-hhhhccCCCCEEEeCC
Confidence 8888876432 1 3455666777776654
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.58 E-value=1.6e-08 Score=114.98 Aligned_cols=85 Identities=18% Similarity=0.080 Sum_probs=47.7
Q ss_pred CCCCcEEEccCCCCCC----cccccccCCCCCceeecCCCCCcc-----CCccccCCCCCcEEEccCCCCCCCCC-----
Q 001326 662 LEGLKELQLMCCSKLG----SLPESLGNLKSLVVLDANRSAILQ-----LPSSIADLNKLRELCLSGCRGFALPP----- 727 (1099)
Q Consensus 662 l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~L~~~~~~~l~~----- 727 (1099)
.++|++|+|++|.+.. .++..+..+++|++|++++|.+.. ++..+...++|++|+|++|.+.....
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 3455555555555432 233334455556666666665542 23445555667777777766543211
Q ss_pred -CCCCCCCCEEeccCCCCcc
Q 001326 728 -LSTLSSLRTLTLSGCGIIE 746 (1099)
Q Consensus 728 -l~~l~~L~~L~Ls~~~l~~ 746 (1099)
+...++|++|+|++|.+..
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCH
T ss_pred HHHhCCCCCEEeccCCCCCH
Confidence 3345778888888888774
No 167
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.55 E-value=4.2e-07 Score=103.78 Aligned_cols=197 Identities=13% Similarity=0.114 Sum_probs=112.3
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRE 107 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 107 (1099)
|...+.++|++..++.+...+..+. -.+.+.|+|++|+||||+|+++.+.+....... . ...+...-..
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~---------~~~~~~~~~~ 80 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-A---------TPCGVCDNCR 80 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-S---------SCCSSSHHHH
T ss_pred CCchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-C---------CCCcccHHHH
Confidence 4455779999999999999986432 234678999999999999999998765332100 0 0000000000
Q ss_pred HHHHH----Hhccc-ccccCCChhHHHHHHh-----cCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCcc
Q 001326 108 RVLSE----IFEEN-IKIETPCLPEYIGERL-----RRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDKW 175 (1099)
Q Consensus 108 ~ll~~----l~~~~-~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~ 175 (1099)
.+... +..-. ......+....+.+.+ .+++.+||+||++.. ...+.+...+.....+..+|++|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp HHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred HHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 00000 00000 0001111122233332 356789999999754 344555444333345667777776443
Q ss_pred -cccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 001326 176 -ILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLG 238 (1099)
Q Consensus 176 -v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 238 (1099)
+.... ......+++.+++.++..+++...+-...... -.+....++++++|.|..+..+.
T Consensus 161 ~l~~~l-~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~--~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 161 KLPVTI-LSRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp GSCHHH-HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hCcHHH-HhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHCCCCHHHHHHHH
Confidence 22211 11123799999999999999987663222111 12456778999999998775543
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.52 E-value=2.1e-07 Score=105.10 Aligned_cols=103 Identities=17% Similarity=0.099 Sum_probs=78.0
Q ss_pred EEEecCc-CCcccCccccCCCCCcEEEeCC-cccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCC
Q 001326 573 ELKLFNT-PIEEVPSSIESLPNLKILNLGF-CKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRS 650 (1099)
Q Consensus 573 ~L~l~~~-~i~~lp~~i~~l~~L~~L~L~~-~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~ 650 (1099)
.++.+++ .+..+|. +..+++|+.|+|++ |.+....+..|.++++|+.|+|++|...+..|..|..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3566666 7888888 88888999999986 7766666677888888888888888777777777888888888888888
Q ss_pred CCcccCcccccCCCCcEEEccCCCCC
Q 001326 651 GIKELPSSIENLEGLKELQLMCCSKL 676 (1099)
Q Consensus 651 ~l~~lp~~l~~l~~L~~L~L~~~~~l 676 (1099)
+++.+|..+.....|+.|+|.+|...
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 88877765443334777777777644
No 169
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.49 E-value=3.6e-06 Score=94.98 Aligned_cols=203 Identities=12% Similarity=0.092 Sum_probs=111.5
Q ss_pred ccchHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHhhcC----------CCCCEEEEEEEcCCCCcHHHHHHHHHH
Q 001326 8 GIKPIRMGFQEYQRLKEKSVSSDFKGLVGLSSRIEKLISLLCV----------GFPDFRIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 8 ~~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
+.++++.|.+++.. ..++...+.++|.+..++++.+.+.. .....+.|.|+|++|+|||++|+++++
T Consensus 63 ~~~~~~~i~~~i~~---~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 63 EPKMIELIMNEIMD---HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CHHHHHHHHHHTBC---CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHhhccc---CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 44455555555432 23445557899999999999888742 112356788999999999999999998
Q ss_pred HHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh---------
Q 001326 78 LISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--------- 148 (1099)
Q Consensus 78 ~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--------- 148 (1099)
..... ++..+.........+. ....+ ...+...-..++.+|+||+++..
T Consensus 140 ~~~~~----~~~i~~~~l~~~~~g~---~~~~~---------------~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 197 (357)
T 3d8b_A 140 QSGAT----FFSISASSLTSKWVGE---GEKMV---------------RALFAVARCQQPAVIFIDEIDSLLSQRGDGEH 197 (357)
T ss_dssp HTTCE----EEEEEGGGGCCSSTTH---HHHHH---------------HHHHHHHHHTCSEEEEEETHHHHTBC------
T ss_pred HcCCe----EEEEehHHhhccccch---HHHHH---------------HHHHHHHHhcCCeEEEEeCchhhhccCCCCcc
Confidence 76432 2222222211011110 00011 11111122356789999999533
Q ss_pred ----hHHHHHh----cCCCCCCCCCeEEEEeCCccccc-cc--CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHH
Q 001326 149 ----GQLKYLA----GGIDRFGPGSRIIITTRDKWILD-NF--GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLL 217 (1099)
Q Consensus 149 ----~~~~~l~----~~~~~~~~gsrIiiTTR~~~v~~-~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 217 (1099)
..+..+. +.......+..||.||....... .. .... .+.++..+.++..+++...+-.....- -.
T Consensus 198 ~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~--~i~i~~p~~~~r~~il~~~~~~~~~~l--~~ 273 (357)
T 3d8b_A 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVK--RLYIPLPEASARKQIVINLMSKEQCCL--SE 273 (357)
T ss_dssp CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCE--EEECCCCCHHHHHHHHHHHHHTSCBCC--CH
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCce--EEEeCCcCHHHHHHHHHHHHhhcCCCc--cH
Confidence 1122222 21111123445665665432221 11 1222 688999999999999987764322111 12
Q ss_pred HHHHHHHHHhCC-CchHHHHHhh
Q 001326 218 ALSKCVLKYANG-NPLALTVLGS 239 (1099)
Q Consensus 218 ~~~~~i~~~~~G-lPLal~~lg~ 239 (1099)
+....+++.+.| .+-.+..++.
T Consensus 274 ~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 274 EEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHH
Confidence 456678888888 4455665554
No 170
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.46 E-value=1.7e-05 Score=91.03 Aligned_cols=124 Identities=18% Similarity=0.256 Sum_probs=80.2
Q ss_pred cccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCccccc-ccCCCCCCC
Q 001326 682 SLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQ-DICCLSSLE 758 (1099)
Q Consensus 682 ~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~-~~~~l~sL~ 758 (1099)
.|.++.+|+.+.+..+...--...+.++++|+.+.+.. ....++. +.++.+|+.+.|..+ ++.+.. .|.++.+|+
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 45566667777665544333345677889999999864 3444444 788899999999764 666654 488899999
Q ss_pred EEEccCCCCcccc-ccccCCCCCCEEeecCCCCCCCCCCCCCCCCeeecccCcCcccCCCCc
Q 001326 759 SLNLAENNFESLP-SSISQLSCLRRLCLRNCNMLQSLPELPLGLRHLEASNCKRLQSFPESP 819 (1099)
Q Consensus 759 ~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~i~~c~~L~~l~~~~ 819 (1099)
.+.|.. +++.+. ..+.++++|+.+++.++... + =....|.+|+.+...+
T Consensus 338 ~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~--~---------~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 338 RIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ--W---------NAISTDSGLQNLPVAP 387 (394)
T ss_dssp EEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHH--H---------HTCBCCCCC-------
T ss_pred EEEECc-ccCEEhHhHhhCCCCCCEEEECCceee--h---------hhhhccCCCCEEEeCC
Confidence 999964 477775 46788999999998875321 1 0234566666665544
No 171
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.44 E-value=1.8e-07 Score=95.45 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=42.9
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
+...+.++||++.++++.+.+.. ...+.+.|+|++|+|||++|+++++.+..
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hccccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34557899999999999999864 33456789999999999999999997643
No 172
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1e-06 Score=96.19 Aligned_cols=168 Identities=11% Similarity=0.039 Sum_probs=99.2
Q ss_pred CccccchhhHHHHHHhhcC--CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC------c-eeEEEEeccccccCCCCH
Q 001326 32 KGLVGLSSRIEKLISLLCV--GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF------E-GRCFVSNVRVESENGHRL 102 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~-~~~~~~~~~~~~~~~~~~ 102 (1099)
+.+.||+++++++...|.. .......+.|+|++|+|||++|+++++++.... . ..+++. .. ...+.
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN-c~----~~~t~ 94 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID-AL----ELAGM 94 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE-TT----CCC--
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe-cc----ccCCH
Confidence 4499999999999887763 234567788999999999999999999875321 1 123332 11 33455
Q ss_pred HHHHHHHHHHHhcccccccCCC-hhHHHHHHh---cCCeEEEEEeCCCChhHHHHHhcCCCCC-CCCCe--EEEEeCCcc
Q 001326 103 VYLRERVLSEIFEENIKIETPC-LPEYIGERL---RRMKVLIVLDDVNKVGQLKYLAGGIDRF-GPGSR--IIITTRDKW 175 (1099)
Q Consensus 103 ~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~l~~~~~~~-~~gsr--IiiTTR~~~ 175 (1099)
..+...+..++.+......... ....+.+.+ .++++++|||+++...+-+.+...+.|. ...++ ||.++....
T Consensus 95 ~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 95 DALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 6777888888755432211111 222222222 4678999999998753222221111111 12333 333344332
Q ss_pred cc---------cccCCCCcceEecCCCCHHHHHHHHhhhhc
Q 001326 176 IL---------DNFGVHSSNIYEVNGLEYDEARELFCNYAF 207 (1099)
Q Consensus 176 v~---------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 207 (1099)
.. ..++ ...+..++.+.+|-.+++..++-
T Consensus 175 ~~~~~L~~~v~SR~~---~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 175 TIREQINIMPSLKAH---FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCHHHHHTCHHHHTT---EEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhcchhhhccCC---ceEEEeCCCCHHHHHHHHHHHHH
Confidence 21 1221 12689999999999999987763
No 173
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.44 E-value=4.6e-06 Score=90.39 Aligned_cols=201 Identities=15% Similarity=0.117 Sum_probs=106.5
Q ss_pred CCccccchhhHHHHHHh-------hc-CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCH
Q 001326 31 FKGLVGLSSRIEKLISL-------LC-VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRL 102 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~-------l~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~ 102 (1099)
...++|.+..++++... +. ......+.+.|+|++|+|||++|+++++.....| +.+. ..... .....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~-~~~~~-~g~~~ 106 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKIC-SPDKM-IGFSE 106 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEE-CGGGC-TTCCH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-CHHHh-cCCch
Confidence 35689998887776662 22 1244578889999999999999999999754332 1121 11100 00010
Q ss_pred HHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh------------hHHHHHhcCCC---CCCCCCeE
Q 001326 103 VYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV------------GQLKYLAGGID---RFGPGSRI 167 (1099)
Q Consensus 103 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~------------~~~~~l~~~~~---~~~~gsrI 167 (1099)
...... ....+......+..+|+|||++.. ..++.+..... ..+....|
T Consensus 107 ~~~~~~----------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 107 TAKCQA----------------MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp HHHHHH----------------HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred HHHHHH----------------HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 000000 112222333467889999998653 12233332222 12233456
Q ss_pred EEEeCCcccccccCC--CCcceEecCCCCH-HHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCC------CchHHHHHh
Q 001326 168 IITTRDKWILDNFGV--HSSNIYEVNGLEY-DEARELFCNYAFKENHCPDDLLALSKCVLKYANG------NPLALTVLG 238 (1099)
Q Consensus 168 iiTTR~~~v~~~~~~--~~~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G------lPLal~~lg 238 (1099)
|.||........... .-...+.+++++. ++..+++.... .. . .+....+++.+.| ++-++.++-
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~-~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NF-K---DKERTTIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CS-C---HHHHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CC-C---HHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 777776644332111 1012789999988 56566655431 11 1 2345667778877 334444433
Q ss_pred hhcCCCCHHHHHHHHHHHhcC
Q 001326 239 SFFHQKSKPDWEKALEKINRI 259 (1099)
Q Consensus 239 ~~L~~~~~~~w~~~l~~l~~~ 259 (1099)
..........++.+++.+.+.
T Consensus 244 ~a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 244 MSLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHTTSCGGGHHHHHHHHHHHT
T ss_pred HHhhhchHHHHHHHHHHHHHc
Confidence 332223445666766666544
No 174
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.44 E-value=1.6e-07 Score=105.70 Aligned_cols=176 Identities=16% Similarity=0.185 Sum_probs=81.7
Q ss_pred CCCCcEEEeCCccccc-c-------cccccccCccccEEeccCCCC---------CCccchhhcCCCCCCEEEccCCCCc
Q 001326 591 LPNLKILNLGFCKRLK-R-------VSTGICKLKYLRCLYLLDCSD---------LESFPEILEKMEPLEKLALDRSGIK 653 (1099)
Q Consensus 591 l~~L~~L~L~~~~~~~-~-------l~~~l~~l~~L~~L~L~~~~~---------~~~~~~~l~~l~~L~~L~L~~~~l~ 653 (1099)
...++.|.+..+...+ . +..++..+++|+.|.+.+... ...+...+..+|+|+.|.|++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3456677776554221 1 223345667777777755321 1123444555666666666655322
Q ss_pred ccCcccccCCCCcEEEccCCCCCCccccccc--CCCCCceeecCCC--C------CccCCccc--cCCCCCcEEEccCCC
Q 001326 654 ELPSSIENLEGLKELQLMCCSKLGSLPESLG--NLKSLVVLDANRS--A------ILQLPSSI--ADLNKLRELCLSGCR 721 (1099)
Q Consensus 654 ~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~--~l~~L~~L~l~~~--~------i~~lp~~~--~~l~~L~~L~L~~~~ 721 (1099)
.++. + .+++|+.|++..|.........+. .+++|+.|+|+.+ . +..+...+ ..+++|+.|+|.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 3333 2 255666666665554332222222 4555555555321 1 11111111 234555555555555
Q ss_pred CCC-----CCCCCCCCCCCEEeccCCCCcc-----cccccCCCCCCCEEEccCCCCc
Q 001326 722 GFA-----LPPLSTLSSLRTLTLSGCGIIE-----ISQDICCLSSLESLNLAENNFE 768 (1099)
Q Consensus 722 ~~~-----l~~l~~l~~L~~L~Ls~~~l~~-----l~~~~~~l~sL~~L~L~~n~l~ 768 (1099)
+.. +.....+++|++|+|+.|.+.. ++..+..+++|+.|+|++|.++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 321 0011234555555555555543 2223334455555555555444
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.43 E-value=1.9e-06 Score=102.26 Aligned_cols=193 Identities=15% Similarity=0.201 Sum_probs=105.3
Q ss_pred CCCCCCccccchhhHHHHHHhhcCC---------------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEe
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVG---------------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSN 91 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~---------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 91 (1099)
.|...+.++|++..++++.+++... .+..+.+.|+|++|+||||+|+++++... +. .+.+ +
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~i-n 109 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQ-N 109 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEE-C
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEE-e
Confidence 3455678999999999999998631 01346889999999999999999999873 21 1222 1
Q ss_pred ccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHH--HHhcCCeEEEEEeCCCChh-----HHHHHhcCCCCCCCC
Q 001326 92 VRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIG--ERLRRMKVLIVLDDVNKVG-----QLKYLAGGIDRFGPG 164 (1099)
Q Consensus 92 ~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~--~~L~~kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~g 164 (1099)
. + ..... .+....+........ .. ....... ....+++.+||||+++... .+..+..... ..+
T Consensus 110 ~---s-~~~~~-~~~~~~i~~~~~~~~-~~--~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~ 179 (516)
T 1sxj_A 110 A---S-DVRSK-TLLNAGVKNALDNMS-VV--GYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTS 179 (516)
T ss_dssp T---T-SCCCH-HHHHHTGGGGTTBCC-ST--TTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCS
T ss_pred C---C-CcchH-HHHHHHHHHHhcccc-HH--HHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcC
Confidence 1 1 11221 121211111111100 00 0000000 0123578899999996431 1222222111 123
Q ss_pred CeEEEEeCCccc--ccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCC-CChhHHHHHHHHHHHhCCCch-HHHHH
Q 001326 165 SRIIITTRDKWI--LDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENH-CPDDLLALSKCVLKYANGNPL-ALTVL 237 (1099)
Q Consensus 165 srIiiTTR~~~v--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPL-al~~l 237 (1099)
..||+++.+... ..... .....+++++++.++..+++...+..... ..+ +....|++.++|.+- ++..+
T Consensus 180 ~~iIli~~~~~~~~l~~l~-~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 180 TPLILICNERNLPKMRPFD-RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp SCEEEEESCTTSSTTGGGT-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred CCEEEEEcCCCCccchhhH-hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 456666554321 11111 11227899999999999998877653221 111 345678888999554 44444
No 176
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.43 E-value=5.5e-06 Score=92.95 Aligned_cols=264 Identities=14% Similarity=0.095 Sum_probs=147.0
Q ss_pred CCCCCCccccchhhHHHHHHhhcCC---CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVG---FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLV 103 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 103 (1099)
.|...+.++|++..++++..++... ......|.|+|++|+|||++|+++++.....|. .+ +.. ......
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~---~~-~~~----~~~~~~ 95 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIK---TT-AAP----MIEKSG 95 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE---EE-EGG----GCCSHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE---Ee-cch----hccchh
Confidence 3445678999999999999888632 233456789999999999999999987654431 11 111 111111
Q ss_pred HHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCC------------------CCC
Q 001326 104 YLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDR------------------FGP 163 (1099)
Q Consensus 104 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~------------------~~~ 163 (1099)
.+. ..+.+ ..+..+|+||+++... ....+...+.. ..+
T Consensus 96 ~~~--------------------~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 96 DLA--------------------AILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp HHH--------------------HHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred HHH--------------------HHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 111 11111 2356789999997542 22222211110 012
Q ss_pred CCeEEEEeCCccccc-cc--CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhh
Q 001326 164 GSRIIITTRDKWILD-NF--GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLGSF 240 (1099)
Q Consensus 164 gsrIiiTTR~~~v~~-~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~ 240 (1099)
+.++|.||....... .. ..+. .+.+++++.++..+++...+-.... .--.+..+.+++.+.|.|-.+..+...
T Consensus 154 ~~~~i~atn~~~~l~~~L~~R~~~--~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRDRFGM--QFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSE--EEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHhhcCE--EeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 356666665433211 11 1222 7999999999999999877643221 112345667888899999655433322
Q ss_pred c------CC---CCHHHHHHHHHHHhcCCCchhHHHHhhcccCCChhhhhHHhhhccccccc--hHhHHHHHhcCCCc-h
Q 001326 241 F------HQ---KSKPDWEKALEKINRISDPDIYDVLKISYNDLRPEEKSIFLDIACFVVGE--EKDFVTSILEDPNI-A 308 (1099)
Q Consensus 241 L------~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~~~~~l~~~~~-~ 308 (1099)
+ .+ -+.+....++.. +..+...++..+++.+..++-. .+. ....+.+.+....- .
T Consensus 230 ~~~~a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl 296 (338)
T 3pfi_A 230 VRDFADVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTI 296 (338)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHH
T ss_pred HHHHHHhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHH
Confidence 1 11 122333333322 2334455666666666666655 332 24455555432211 3
Q ss_pred hhhHH-HHhhccceEEecCCeEEehHHHHH
Q 001326 309 HYGLS-VLIERSLVTISKFNKIEMHDLLQE 337 (1099)
Q Consensus 309 ~~~l~-~L~~~sLi~~~~~~~~~mHdll~~ 337 (1099)
...++ .|++.++|.....+++.-..-+..
T Consensus 297 ~~~l~~~l~~~gli~~~~~g~~~t~~~~~~ 326 (338)
T 3pfi_A 297 EDVIEPYLLANGYIERTAKGRIASAKSYSA 326 (338)
T ss_dssp HHTTHHHHHHTTSEEEETTEEEECHHHHHH
T ss_pred HHHHhHHHHHcCceecCCCcccccHHHHHH
Confidence 33455 788999998886676654443333
No 177
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.42 E-value=1.4e-06 Score=95.36 Aligned_cols=183 Identities=18% Similarity=0.149 Sum_probs=103.3
Q ss_pred CCCCCCccccchhhHHHHHHhhcCC-----------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEecccc
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVG-----------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVE 95 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 95 (1099)
+....+.++|++..+++|.+.+... ....+.+.|+|++|+|||++|+++++.....|- .+ +....
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~---~v-~~~~~ 87 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI---RV-VGSEL 87 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE---EE-EGGGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EE-ehHHH
Confidence 3445678999999999998887421 123456889999999999999999998644321 22 11111
Q ss_pred ccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh----------------hHHHHHhcCCC
Q 001326 96 SENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV----------------GQLKYLAGGID 159 (1099)
Q Consensus 96 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~ 159 (1099)
.....+. . ... ....+......++.+|+|||++.. ..+..+.....
T Consensus 88 ~~~~~~~--~-~~~---------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 149 (285)
T 3h4m_A 88 VKKFIGE--G-ASL---------------VKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD 149 (285)
T ss_dssp CCCSTTH--H-HHH---------------HHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH
T ss_pred HHhccch--H-HHH---------------HHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh
Confidence 1011110 0 000 111222222346689999999653 11222222211
Q ss_pred --CCCCCCeEEEEeCCccccccc-----CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCC-c
Q 001326 160 --RFGPGSRIIITTRDKWILDNF-----GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGN-P 231 (1099)
Q Consensus 160 --~~~~gsrIiiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-P 231 (1099)
....+..||.||......... ..+. .+.++.++.++..+++...+.......+. ....++..+.|. |
T Consensus 150 ~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~--~i~~~~p~~~~r~~il~~~~~~~~~~~~~---~~~~l~~~~~g~~~ 224 (285)
T 3h4m_A 150 GFDARGDVKIIGATNRPDILDPAILRPGRFDR--IIEVPAPDEKGRLEILKIHTRKMNLAEDV---NLEEIAKMTEGCVG 224 (285)
T ss_dssp TTCSSSSEEEEEECSCGGGBCHHHHSTTSEEE--EEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHHCTTCCH
T ss_pred CCCCCCCEEEEEeCCCchhcCHHHcCCCcCCe--EEEECCCCHHHHHHHHHHHHhcCCCCCcC---CHHHHHHHcCCCCH
Confidence 112456777788755433210 1222 78999999999999998887543322211 134566666663 4
Q ss_pred hHHHH
Q 001326 232 LALTV 236 (1099)
Q Consensus 232 Lal~~ 236 (1099)
-.+..
T Consensus 225 ~~i~~ 229 (285)
T 3h4m_A 225 AELKA 229 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 34433
No 178
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=2.7e-06 Score=96.11 Aligned_cols=198 Identities=14% Similarity=0.125 Sum_probs=111.7
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc--CceeEEEEeccccccCCCCHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE--FEGRCFVSNVRVESENGHRLVY 104 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~ 104 (1099)
.|...+.++|++..++.+..++..+.. ..+.|+|++|+||||+|+++.+.+... +...+...+. + ...+...
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~---~-~~~~~~~ 105 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA---S-DERGISI 105 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS---S-SCCCHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc---c-cccchHH
Confidence 345567899999999999999875432 237899999999999999999875421 2212221111 1 2223333
Q ss_pred HHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCcc-cccccC
Q 001326 105 LRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDKW-ILDNFG 181 (1099)
Q Consensus 105 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~~ 181 (1099)
+.. ............ .. .......-.+++-+|++|+++.. ...+.+...+.......++|++|.... +.....
T Consensus 106 ~~~-~~~~~~~~~~~~-~~--~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 106 VRE-KVKNFARLTVSK-PS--KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp HTT-HHHHHHHSCCCC-CC--TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHH-HHHHHhhhcccc-cc--hhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 222 222221111000 00 00011111245679999999754 233344333322234567777775443 222111
Q ss_pred CCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001326 182 VHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVL 237 (1099)
Q Consensus 182 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 237 (1099)
.....+.+.+++.++..+.+...+......- -.+..+.|+++++|.|-.+..+
T Consensus 182 -sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 182 -SQCSKFRFKALDASNAIDRLRFISEQENVKC--DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp -HHSEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHTSSCHHHHHHH
T ss_pred -ccCceEEeCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 1112789999999999999988764322211 1356678999999999765443
No 179
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.36 E-value=5.3e-07 Score=95.80 Aligned_cols=175 Identities=15% Similarity=0.135 Sum_probs=98.8
Q ss_pred CCCccccch---hhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHH
Q 001326 30 DFKGLVGLS---SRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLR 106 (1099)
Q Consensus 30 ~~~~~vGr~---~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 106 (1099)
..+.++|.+ ..++.+..+.... ..+.+.|+|++|+||||+|+++++..........|+. ..... .. .
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~-~~--~---- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHA-SI--S---- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGG-GS--C----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHH-HH--H----
Confidence 446788743 5556666666432 4567889999999999999999997765533445553 21111 00 0
Q ss_pred HHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--H--HHHHhcCCCCC-CCCC-eEEEEeCCccc-c--
Q 001326 107 ERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--Q--LKYLAGGIDRF-GPGS-RIIITTRDKWI-L-- 177 (1099)
Q Consensus 107 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~--~~~l~~~~~~~-~~gs-rIiiTTR~~~v-~-- 177 (1099)
...+ +.+ .++.+||+||++... . .+.+...+... ..+. ++|+||+...- .
T Consensus 96 -------------------~~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 -------------------TALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -------------------GGGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -------------------HHHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0000 011 345789999996442 1 22222211110 1222 58888774321 0
Q ss_pred --cccC--CCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001326 178 --DNFG--VHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVL 237 (1099)
Q Consensus 178 --~~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 237 (1099)
.... ......+++++++.++..+++...+...... --.+....++++++|.+-.+..+
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ--LPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCHHHHHHH
Confidence 1100 0101279999999999999998876422211 11245667888899988766544
No 180
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.35 E-value=1.1e-05 Score=88.53 Aligned_cols=199 Identities=16% Similarity=0.071 Sum_probs=110.3
Q ss_pred HHHHHHHHhhcc-cCCCCCCccccchhhHHHHHHhhcCC----------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 14 MGFQEYQRLKEK-SVSSDFKGLVGLSSRIEKLISLLCVG----------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 14 ~i~~~v~~~l~~-~~~~~~~~~vGr~~~~~~l~~~l~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
++++.+.+.+.. .++...+.++|.+..++.+.+.+... ....+.|.|+|++|+||||+|+++++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp CHHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 456666666543 34445578999999999998877320 1124678899999999999999999976433
Q ss_pred CceeEEEEeccccccCC-CCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh------------
Q 001326 83 FEGRCFVSNVRVESENG-HRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG------------ 149 (1099)
Q Consensus 83 f~~~~~~~~~~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~------------ 149 (1099)
| +.+ +........ .......+. .+......++.+|+||+++...
T Consensus 82 ~---~~i-~~~~l~~~~~~~~~~~~~~-------------------~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 138 (297)
T 3b9p_A 82 F---LNI-SAASLTSKYVGDGEKLVRA-------------------LFAVARHMQPSIIFIDEVDSLLSERSSSEHEASR 138 (297)
T ss_dssp E---EEE-ESTTTSSSSCSCHHHHHHH-------------------HHHHHHHTCSEEEEEETGGGTSBCC-----CCSH
T ss_pred e---EEe-eHHHHhhcccchHHHHHHH-------------------HHHHHHHcCCcEEEeccHHHhccccccCcchHHH
Confidence 2 122 111111010 011111111 1112223467899999996431
Q ss_pred -HHHHHhc---CCCC--CCCCCeEEEEeCCcccccc-c--CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHH
Q 001326 150 -QLKYLAG---GIDR--FGPGSRIIITTRDKWILDN-F--GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALS 220 (1099)
Q Consensus 150 -~~~~l~~---~~~~--~~~gsrIiiTTR~~~v~~~-~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~ 220 (1099)
....+.. .... .+.+..||.||........ . ..+. .+.++..+.++..+++...+-.....-+ .+..
T Consensus 139 ~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~--~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~ 214 (297)
T 3b9p_A 139 RLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTK--RVYVSLPDEQTRELLLNRLLQKQGSPLD--TEAL 214 (297)
T ss_dssp HHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCE--EEECCCCCHHHHHHHHHHHHGGGSCCSC--HHHH
T ss_pred HHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCe--EEEeCCcCHHHHHHHHHHHHHhcCCCCC--HHHH
Confidence 1111211 1111 1234556667765432211 0 1223 6888888999988888777643222111 2345
Q ss_pred HHHHHHhCCCch-HHHHHhh
Q 001326 221 KCVLKYANGNPL-ALTVLGS 239 (1099)
Q Consensus 221 ~~i~~~~~GlPL-al~~lg~ 239 (1099)
..+++.+.|.+- ++..+..
T Consensus 215 ~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 215 RRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp HHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 678888999886 5555543
No 181
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.34 E-value=7.1e-06 Score=91.21 Aligned_cols=186 Identities=14% Similarity=0.094 Sum_probs=105.2
Q ss_pred CCCCCCccccchhhHHHHHHhhc----------CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccc
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLC----------VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVES 96 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 96 (1099)
+...-+.++|.+..+++|.+.+. ......+-|.++|++|+|||++|+++++.....| +..+.....
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~ 88 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLV 88 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHHh
Confidence 44455789999999999998872 1122245688999999999999999999865432 211111100
Q ss_pred cCCCC-HHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh-------------HHHHHhcCCC---
Q 001326 97 ENGHR-LVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG-------------QLKYLAGGID--- 159 (1099)
Q Consensus 97 ~~~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~--- 159 (1099)
....+ .... ....+...-..++.+|+||+++... ....+...+.
T Consensus 89 ~~~~g~~~~~-------------------~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 149 (322)
T 3eie_A 89 SKWMGESEKL-------------------VKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 149 (322)
T ss_dssp TTTGGGHHHH-------------------HHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG
T ss_pred hcccchHHHH-------------------HHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc
Confidence 00000 0000 1111222223566899999997431 1222222221
Q ss_pred CCCCCCeEEEEeCCcccccc-c--CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCC-chHHH
Q 001326 160 RFGPGSRIIITTRDKWILDN-F--GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGN-PLALT 235 (1099)
Q Consensus 160 ~~~~gsrIiiTTR~~~v~~~-~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~ 235 (1099)
....+..||.||.....+.. . ..+. .+.++..+.++..+++..++.+...... ......+++.+.|. +-.+.
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~~Rf~~--~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg~di~ 225 (322)
T 3eie_A 150 NDSQGVLVLGATNIPWQLDSAIRRRFER--RIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSGSDIA 225 (322)
T ss_dssp TSCCCEEEEEEESCGGGSCHHHHHHCCE--EEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCHHHHH
T ss_pred ccCCceEEEEecCChhhCCHHHHcccCe--EEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCHHHHH
Confidence 22345566667765433221 0 1233 6889999999999999988754332211 23455677788774 44454
Q ss_pred HHhh
Q 001326 236 VLGS 239 (1099)
Q Consensus 236 ~lg~ 239 (1099)
.+..
T Consensus 226 ~l~~ 229 (322)
T 3eie_A 226 VVVK 229 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.31 E-value=1.1e-05 Score=86.89 Aligned_cols=178 Identities=19% Similarity=0.137 Sum_probs=97.5
Q ss_pred CCCccccchhhHHHHHHhhcC----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCC
Q 001326 30 DFKGLVGLSSRIEKLISLLCV----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENG 99 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 99 (1099)
..+.++|.+..++++.+++.. +....+.|.|+|++|+|||++|+++++.....| +.+ +........
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~-~~~~~~~~~ 79 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAM-AGAEFVEVI 79 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEE-ETTTTSSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEe-chHHHHhhc
Confidence 456799999988888776531 112345678999999999999999999775432 222 221111010
Q ss_pred CCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh-----------------HHHHHhcCCCC--
Q 001326 100 HRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG-----------------QLKYLAGGIDR-- 160 (1099)
Q Consensus 100 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-----------------~~~~l~~~~~~-- 160 (1099)
.+. .... ....+.......+.+|+|||++... .+..+......
T Consensus 80 ~~~---~~~~---------------~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 80 GGL---GAAR---------------VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp TTH---HHHH---------------HHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred cCh---hHHH---------------HHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 110 0000 1112222223457899999997641 12233222111
Q ss_pred CCCCCeEEEEeCCccccc-cc----CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 001326 161 FGPGSRIIITTRDKWILD-NF----GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL 232 (1099)
Q Consensus 161 ~~~gsrIiiTTR~~~v~~-~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 232 (1099)
...+..||.||....... .. ..+. .+.++.++.++..+++..++....... ........+++.+.|.+-
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~--~i~i~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDR--HVFIDLPTLQERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCE--EEECCSCCHHHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCCH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCe--EEEeCCcCHHHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCCH
Confidence 123456666775543221 11 1223 788999999999999988764332221 112234677788888764
No 183
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=2.6e-06 Score=96.31 Aligned_cols=201 Identities=13% Similarity=0.069 Sum_probs=105.5
Q ss_pred CCCCCCccccchhhHHHHHHhh-cCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEec-------------
Q 001326 27 VSSDFKGLVGLSSRIEKLISLL-CVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNV------------- 92 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~------------- 92 (1099)
.|...+.++|.+..++.+..++ ..+. ... +.|+|+.|+||||+|+.++..+...-...+++...
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------C
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceee
Confidence 3455678999999999999988 5332 233 88999999999999999998653221111111000
Q ss_pred -------cccccCCCCH--HHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCC
Q 001326 93 -------RVESENGHRL--VYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRF 161 (1099)
Q Consensus 93 -------~~~~~~~~~~--~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~ 161 (1099)
-.......+. ....++++..+..... ... .. .+. .+.+++-++|||+++... ..+.+...+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~--~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-VDF--QD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp CEECSSEEEECCC----CCHHHHHHHHHHHTTTTC-----------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred eecccceEEecHhhcCCcchHHHHHHHHHHHHhcc-ccc--cc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 0000000000 0012222222211100 000 00 000 023466799999997643 233333332222
Q ss_pred CCCCeEEEEeCCcc-cccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 001326 162 GPGSRIIITTRDKW-ILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTV 236 (1099)
Q Consensus 162 ~~gsrIiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 236 (1099)
.++.++|++|.+.. +..... .....+++++++.++..+++...+-.....-+ ..+....|++.++|.+-.+..
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~-sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIK-SQCLLIRCPAPSDSEISTILSDVVTNERIQLE-TKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC-CSHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHH-hhceEEecCCcCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHcCCCHHHHHH
Confidence 45678887776543 222211 11137999999999999999877643221100 024567788899998865433
No 184
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.28 E-value=2.1e-06 Score=99.50 Aligned_cols=179 Identities=15% Similarity=0.175 Sum_probs=103.0
Q ss_pred CCccc-cchhhH--HHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCce--eEEEEeccccccCCCCHHHH
Q 001326 31 FKGLV-GLSSRI--EKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEG--RCFVSNVRVESENGHRLVYL 105 (1099)
Q Consensus 31 ~~~~v-Gr~~~~--~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l 105 (1099)
.+.|| |....+ ..+......... ...+.|+|++|+||||||+++++.+..++.. .+++. ...+
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-----------~~~~ 171 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKF 171 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-----------HHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHH
Confidence 34566 654443 334444433222 6678899999999999999999987655422 23332 1122
Q ss_pred HHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh----HHHHHhcCCCC-CCCCCeEEEEeCCccc----
Q 001326 106 RERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG----QLKYLAGGIDR-FGPGSRIIITTRDKWI---- 176 (1099)
Q Consensus 106 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gsrIiiTTR~~~v---- 176 (1099)
..++...+... ....+.+.++.+.-+|+|||++... ..+.+...+.. ...|..||+||....-
T Consensus 172 ~~~~~~~~~~~--------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 172 LNDLVDSMKEG--------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHHHHTT--------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHHHHcc--------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 33333333221 1233444455467799999996432 22333222211 2457789999876321
Q ss_pred -----ccccCCCCcceEecCCCCHHHHHHHHhhhhcCC--CCCChhHHHHHHHHHHHhCCCchHHH
Q 001326 177 -----LDNFGVHSSNIYEVNGLEYDEARELFCNYAFKE--NHCPDDLLALSKCVLKYANGNPLALT 235 (1099)
Q Consensus 177 -----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~--~~~~~~~~~~~~~i~~~~~GlPLal~ 235 (1099)
...+.. ..++.+++++.++..+++...+... ..+. +....|++.+.|.+-.+.
T Consensus 244 l~~~L~sR~~~--g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~----e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 244 FQDRLVSRFQM--GLVAKLEPPDEETRKSIARKMLEIEHGELPE----EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp CCHHHHHHHHS--SBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHCCSCHHHHH
T ss_pred HHHHHHhhccC--CeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHhcCCCHHHHH
Confidence 111211 1268999999999999998877421 1222 335567788888886543
No 185
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.26 E-value=1.1e-05 Score=90.88 Aligned_cols=186 Identities=14% Similarity=0.126 Sum_probs=102.4
Q ss_pred CCCCCCccccchhhHHHHHHhhcC----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccc
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCV----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVES 96 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 96 (1099)
+....+.++|.+..+++|.+.+.. .....+-|.|+|++|+|||+||+++++.....| +..+...
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~-- 119 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSD-- 119 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHH--
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHH--
Confidence 344557899999999999887631 112235578999999999999999999875332 2111110
Q ss_pred cCCCCHHHHHHHHHHHHhcccccccCCC-hhHHHHHHhcCCeEEEEEeCCCChh-------------HHHHHhcCC---C
Q 001326 97 ENGHRLVYLRERVLSEIFEENIKIETPC-LPEYIGERLRRMKVLIVLDDVNKVG-------------QLKYLAGGI---D 159 (1099)
Q Consensus 97 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~---~ 159 (1099)
+...... .... ....+...-..++.+|+||+++... ....+...+ .
T Consensus 120 ----------------l~~~~~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 120 ----------------LVSKWMG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp ----------------HHSCC----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC
T ss_pred ----------------Hhhhhcc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc
Confidence 0000000 0000 1111222223577899999997532 122222221 1
Q ss_pred CCCCCCeEEEEeCCccccc-cc--CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCC-chHHH
Q 001326 160 RFGPGSRIIITTRDKWILD-NF--GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGN-PLALT 235 (1099)
Q Consensus 160 ~~~~gsrIiiTTR~~~v~~-~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~ 235 (1099)
....+..||.||....... .. ..+. .+.++..+.++..+++..++........ ......|++.+.|. +-.|.
T Consensus 183 ~~~~~v~vI~atn~~~~ld~al~rRf~~--~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl~ 258 (355)
T 2qp9_X 183 NDSQGVLVLGATNIPWQLDSAIRRRFER--RIYIPLPDLAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDIA 258 (355)
T ss_dssp ---CCEEEEEEESCGGGSCHHHHHTCCE--EEECCCCCHHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHHH
T ss_pred ccCCCeEEEeecCCcccCCHHHHcccCE--EEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHHH
Confidence 1123455666665442211 11 2333 7889999999999999887754322111 23456677888884 43455
Q ss_pred HHhh
Q 001326 236 VLGS 239 (1099)
Q Consensus 236 ~lg~ 239 (1099)
.+..
T Consensus 259 ~l~~ 262 (355)
T 2qp9_X 259 VVVK 262 (355)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 186
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.26 E-value=0.00012 Score=83.29 Aligned_cols=287 Identities=10% Similarity=0.120 Sum_probs=142.9
Q ss_pred ccccCCccEEeccCCCCCCcCCC--CCCCCCccEEEeeCCCCCCccC-ccccCCCCCCEEEcCCCCCcccCCCCC-CCCC
Q 001326 474 EKEAFKLKSIDLHQSHNLTRIPK--QSEAPNLERINLWNCKNLLYIP-SHIQNFNNLSMLSLRDCISLSCFPRNI-HFRS 549 (1099)
Q Consensus 474 ~~~l~~L~~L~Ls~~~~l~~~~~--~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~ 549 (1099)
.....+|+.+.+... ++.+++ |.++.+|+.+.|..+ +..+. ..|.++ +|+.+.+.. .+..++... ...+
T Consensus 42 ~~~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTD 114 (379)
T ss_dssp GGGGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCC
T ss_pred cccccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc--eeeEeccceeccCC
Confidence 344567777777643 455554 678888888888643 34443 345554 566666643 233333332 3345
Q ss_pred CcEEEccCCcCCCCCCC---CCCCccEEEecCcCCcccC-ccccCCCCCcEEEeCCcccccccccccccCccccEEeccC
Q 001326 550 PVKIDFSGCVNLTEFPH---ISGNVVELKLFNTPIEEVP-SSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLD 625 (1099)
Q Consensus 550 L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~ 625 (1099)
|+.+.+... ++.+.. ...+++.+.+..+ +..+. ..+..+.+++.+.+..............
T Consensus 115 L~~i~lp~~--~~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~------------ 179 (379)
T 4h09_A 115 LDDFEFPGA--TTEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL------------ 179 (379)
T ss_dssp CSEEECCTT--CCEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE------------
T ss_pred cccccCCCc--cccccccccccceeeeeeccce-eeccccchhcccccccccccccccceeeccccee------------
Confidence 666655431 111111 0112222222211 11111 1223334444443332221110000000
Q ss_pred CCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccC-Cc
Q 001326 626 CSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQL-PS 704 (1099)
Q Consensus 626 ~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~ 704 (1099)
..........+.....+..+.+...........+....+|+.+.+..+ ....-...+.++.+|+.+.+..+ ++.+ ..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~ 257 (379)
T 4h09_A 180 YNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSF 257 (379)
T ss_dssp EETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTT
T ss_pred cccccceeccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcc
Confidence 000011112233334444444443332223334455666666666433 12222234566677777777654 4433 34
Q ss_pred cccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCcccccc-cCCCCCCCEEEccCCCCccccc-cccCCCCC
Q 001326 705 SIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQD-ICCLSSLESLNLAENNFESLPS-SISQLSCL 780 (1099)
Q Consensus 705 ~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~~-~~~l~sL~~L~L~~n~l~~lp~-~l~~l~~L 780 (1099)
.+.++.+|+.+.+..+ ...++. +.++++|+.+.+.++.+..++.. |.++.+|+.+.|.. +++.+.. .+.++++|
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTC
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCC
Confidence 5667777888877544 333332 67778888888888777776654 77888888888864 3666653 46667777
Q ss_pred CEEeec
Q 001326 781 RRLCLR 786 (1099)
Q Consensus 781 ~~L~L~ 786 (1099)
+.+.+.
T Consensus 336 ~~i~ip 341 (379)
T 4h09_A 336 STISYP 341 (379)
T ss_dssp CCCCCC
T ss_pred CEEEEC
Confidence 766664
No 187
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.24 E-value=3.6e-05 Score=85.31 Aligned_cols=187 Identities=13% Similarity=0.090 Sum_probs=103.6
Q ss_pred CCCCCCccccchhhHHHHHHhhcC----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccc
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCV----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVES 96 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 96 (1099)
+...-++++|.+..+++|.+.+.. .....+.|.++|++|+|||+||+++++..... .++..+.....
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~---~~~~i~~~~l~ 83 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS---TFFSISSSDLV 83 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC---EEEEEECCSSC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC---cEEEEEhHHHH
Confidence 334457899999999888877631 11234678899999999999999999986211 12221111111
Q ss_pred cCCC-CHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh-------------HHHHHhcC---CC
Q 001326 97 ENGH-RLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG-------------QLKYLAGG---ID 159 (1099)
Q Consensus 97 ~~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~---~~ 159 (1099)
.... ...... ...+...-..++.+|+||+++... ....+... ..
T Consensus 84 ~~~~g~~~~~~-------------------~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 144 (322)
T 1xwi_A 84 SKWLGESEKLV-------------------KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 144 (322)
T ss_dssp CSSCCSCHHHH-------------------HHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS
T ss_pred hhhhhHHHHHH-------------------HHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc
Confidence 0000 011111 111112223567899999997541 11222221 11
Q ss_pred CCCCCCeEEEEeCCccccc-cc--CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHH
Q 001326 160 RFGPGSRIIITTRDKWILD-NF--GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL-ALT 235 (1099)
Q Consensus 160 ~~~~gsrIiiTTR~~~v~~-~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~ 235 (1099)
....+..||.||....... .. ..+. .+.++..+.++..+++..++.+...... ......+++.+.|..- .+.
T Consensus 145 ~~~~~v~vI~atn~~~~ld~al~rRf~~--~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~ 220 (322)
T 1xwi_A 145 VDNDGILVLGATNIPWVLDSAIRRRFEK--RIYIPLPEPHARAAMFKLHLGTTQNSLT--EADFRELGRKTDGYSGADIS 220 (322)
T ss_dssp SCCTTEEEEEEESCTTTSCHHHHHTCCE--EEECCCCCHHHHHHHHHHHHTTCCBCCC--HHHHHHHHHTCTTCCHHHHH
T ss_pred ccCCCEEEEEecCCcccCCHHHHhhcCe--EEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHH
Confidence 1123445565665442221 11 2333 7899999999999999887643322111 2345678888888744 455
Q ss_pred HHhh
Q 001326 236 VLGS 239 (1099)
Q Consensus 236 ~lg~ 239 (1099)
.+..
T Consensus 221 ~l~~ 224 (322)
T 1xwi_A 221 IIVR 224 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 188
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.20 E-value=1.6e-05 Score=90.33 Aligned_cols=201 Identities=12% Similarity=0.079 Sum_probs=104.7
Q ss_pred CCccccchhhHHHH---HHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHH
Q 001326 31 FKGLVGLSSRIEKL---ISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRE 107 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l---~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 107 (1099)
.+.+||++..++.+ ...+..+....+.+.|+|++|+|||++|+++++.+...... +.+......+ ...+......
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIAGSEIFS-LEMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEEGGGGSC-SSSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-ccccchhhhh-cccchhHHHH
Confidence 56799999987764 44444333233678899999999999999999988643321 1222111111 2233333333
Q ss_pred HHHHHHhccc---------------------c---cc-cC-----CC-hhHHHHHHh-----cCC----eEEEEEeCCCC
Q 001326 108 RVLSEIFEEN---------------------I---KI-ET-----PC-LPEYIGERL-----RRM----KVLIVLDDVNK 147 (1099)
Q Consensus 108 ~ll~~l~~~~---------------------~---~~-~~-----~~-~~~~l~~~L-----~~k----r~LlVLDdv~~ 147 (1099)
+.+....... . .. .. .. ....+.+.. .++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 3333211100 0 00 00 00 111221111 133 35999999975
Q ss_pred h--hHHHHHhcCCCCCCCCCeEEEEeCC-c------------ccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCC
Q 001326 148 V--GQLKYLAGGIDRFGPGSRIIITTRD-K------------WILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHC 212 (1099)
Q Consensus 148 ~--~~~~~l~~~~~~~~~gsrIiiTTR~-~------------~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 212 (1099)
. +....+...+..... ..++++|.. . .+.... ......+.+++++.++..+++...+-.....
T Consensus 201 l~~~~~~~L~~~le~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l-~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDL-LDRLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp SBHHHHHHHHHHTTCTTC-CEEEEEESCSEEECBTSSCEEETTCCHHH-HTTEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred cChHHHHHHHHHhhCcCC-CeeeeecccceeeeeccCCCCcccCCHHH-HhhccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4 334444443333222 244444431 1 011111 0111258999999999999998876532221
Q ss_pred ChhHHHHHHHHHHHhC-CCchHHHHH
Q 001326 213 PDDLLALSKCVLKYAN-GNPLALTVL 237 (1099)
Q Consensus 213 ~~~~~~~~~~i~~~~~-GlPLal~~l 237 (1099)
--.+....+++++. |.|-.+..+
T Consensus 279 --~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 279 --MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp --BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred --CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 12245677888887 888655433
No 189
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.19 E-value=9.2e-06 Score=90.49 Aligned_cols=179 Identities=15% Similarity=0.066 Sum_probs=97.7
Q ss_pred CCCCccc-cchhh--HHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHH
Q 001326 29 SDFKGLV-GLSSR--IEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYL 105 (1099)
Q Consensus 29 ~~~~~~v-Gr~~~--~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 105 (1099)
...+.|| |.... ...+..+..........+.|+|++|+||||||+++++.....-...+++. . ..+
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~----------~~~ 76 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A----------DDF 76 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H----------HHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H----------HHH
Confidence 3456676 54333 33455555433334567889999999999999999997754322233442 1 122
Q ss_pred HHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh---H-HHHHhcCCCC-CCCCCeEEEEeCCccc----
Q 001326 106 RERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG---Q-LKYLAGGIDR-FGPGSRIIITTRDKWI---- 176 (1099)
Q Consensus 106 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gsrIiiTTR~~~v---- 176 (1099)
...+...+... ....+.+.+. +.-+|+|||++... . .+.+...+.. ...|.+||+||.....
T Consensus 77 ~~~~~~~~~~~--------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 77 AQAMVEHLKKG--------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHHHHT--------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT
T ss_pred HHHHHHHHHcC--------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHH
Confidence 23333333211 1222333333 36789999996543 1 2222222111 1346678888864321
Q ss_pred -----ccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 001326 177 -----LDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLA 233 (1099)
Q Consensus 177 -----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 233 (1099)
...+... .++++++ +.++..+++...+......-+ .+....+++++ |..-.
T Consensus 148 l~~~L~sR~~~~--~~i~l~~-~~~e~~~il~~~~~~~~~~l~--~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 148 VSDRLVSRFEGG--ILVEIEL-DNKTRFKIIKEKLKEFNLELR--KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp SCHHHHHHHHTS--EEEECCC-CHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHC-SSHHH
T ss_pred hhhHhhhcccCc--eEEEeCC-CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhC-CCHHH
Confidence 1111111 2789999 999999999888753222111 24456677777 76643
No 190
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.15 E-value=2e-05 Score=87.80 Aligned_cols=179 Identities=16% Similarity=0.178 Sum_probs=102.5
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRE 107 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 107 (1099)
|...+.++|.+..++.+.+++..+. -..++.+.|++|+|||++|+++.+.+... .+.+. . ...+...+..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-~-----~~~~~~~i~~ 91 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-G-----SDCKIDFVRG 91 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-T-----TTCCHHHHHT
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-c-----cccCHHHHHH
Confidence 4556789999999999999997432 33577788999999999999999877422 22222 1 2223322222
Q ss_pred HHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh---HHHHHhcCCCCCCCCCeEEEEeCCcccc-cccCCC
Q 001326 108 RVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG---QLKYLAGGIDRFGPGSRIIITTRDKWIL-DNFGVH 183 (1099)
Q Consensus 108 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~~~~~~ 183 (1099)
.+.+..... ...+++-+||+||++... ..+.|...+.....+.++|+||....-. .... .
T Consensus 92 -~~~~~~~~~--------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~-s 155 (324)
T 3u61_B 92 -PLTNFASAA--------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ-S 155 (324)
T ss_dssp -HHHHHHHBC--------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHH-H
T ss_pred -HHHHHHhhc--------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHH-h
Confidence 222211110 012477899999998764 3444443333223567888888765321 1110 1
Q ss_pred CcceEecCCCCHHHHHHHH-------hhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 001326 184 SSNIYEVNGLEYDEARELF-------CNYAFKENHCPDDLLALSKCVLKYANGNPLA 233 (1099)
Q Consensus 184 ~~~~~~l~~L~~~ea~~Lf-------~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 233 (1099)
...++++++++.++..+++ ...+......-+. .+....++++++|.+-.
T Consensus 156 R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD-MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC-HHHHHHHHHHTCSCTTH
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHhCCCCHHH
Confidence 1127999999988854332 2222111111000 14556677888887654
No 191
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.14 E-value=4.2e-05 Score=88.79 Aligned_cols=188 Identities=14% Similarity=0.158 Sum_probs=106.2
Q ss_pred CCCCCCccccchhhHHHHHHhhcC----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccc
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCV----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVES 96 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 96 (1099)
+....+.++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++++.... ..++..+.
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~---- 201 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISS---- 201 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECC----
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeH----
Confidence 334457899999999999887631 1123467889999999999999999997621 11222111
Q ss_pred cCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh-------------hHHHHHhcCCCCC--
Q 001326 97 ENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV-------------GQLKYLAGGIDRF-- 161 (1099)
Q Consensus 97 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~~-- 161 (1099)
..+ ....... ........+...-..++.+|+||+++.. .....+...+...
T Consensus 202 ---~~l-------~~~~~g~----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 267 (444)
T 2zan_A 202 ---SDL-------VSKWLGE----SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 267 (444)
T ss_dssp ---C--------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC
T ss_pred ---HHH-------Hhhhcch----HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc
Confidence 111 0100000 0111222232223356789999999754 1234455444332
Q ss_pred -CCCCeEEEEeCCcccccc-c--CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc-hHHHH
Q 001326 162 -GPGSRIIITTRDKWILDN-F--GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNP-LALTV 236 (1099)
Q Consensus 162 -~~gsrIiiTTR~~~v~~~-~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~ 236 (1099)
..+..||.||........ . ..+. .+.++..+.++..+++..++........ ......|++.+.|.. -.+..
T Consensus 268 ~~~~v~vI~atn~~~~ld~al~rRf~~--~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~ 343 (444)
T 2zan_A 268 DNDGILVLGATNIPWVLDSAIRRRFEK--RIYIPLPEAHARAAMFRLHLGSTQNSLT--EADFQELGRKTDGYSGADISI 343 (444)
T ss_dssp CCSSCEEEEEESCGGGSCHHHHTTCCE--EEECCCCCHHHHHHHHHHHHTTSCEECC--HHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCCEEEEecCCCccccCHHHHhhcce--EEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHH
Confidence 345666767755432211 1 2233 7889999999999999887743321111 234456778888854 34554
Q ss_pred Hhh
Q 001326 237 LGS 239 (1099)
Q Consensus 237 lg~ 239 (1099)
+..
T Consensus 344 l~~ 346 (444)
T 2zan_A 344 IVR 346 (444)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 192
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.13 E-value=3.7e-05 Score=84.42 Aligned_cols=178 Identities=20% Similarity=0.202 Sum_probs=101.5
Q ss_pred CCCCCCccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEecccc
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVE 95 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 95 (1099)
+....+.++|.+..++++.+++.. +-...+.|.|+|++|+|||++|+++++.....| +.+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~----- 81 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK----- 81 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC-----
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE-----
Confidence 334456799999999888887642 123346788999999999999999999764321 1111
Q ss_pred ccCCCCHHHHHHHHHHHHhcccccccCCC-hhHHHHHHhcCCeEEEEEeCCCChhH----------------HHHHhcCC
Q 001326 96 SENGHRLVYLRERVLSEIFEENIKIETPC-LPEYIGERLRRMKVLIVLDDVNKVGQ----------------LKYLAGGI 158 (1099)
Q Consensus 96 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LlVLDdv~~~~~----------------~~~l~~~~ 158 (1099)
... +........ .. ....+.......+.+|+||+++.... ...+...+
T Consensus 82 ------~~~----l~~~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l 146 (301)
T 3cf0_A 82 ------GPE----LLTMWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 146 (301)
T ss_dssp ------HHH----HHHHHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHH
T ss_pred ------hHH----HHhhhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHh
Confidence 011 122221111 11 23333444345679999999974311 12222211
Q ss_pred CC--CCCCCeEEEEeCCcccccc-c----CCCCcceEecCCCCHHHHHHHHhhhhcCCCCC-ChhHHHHHHHHHHHhCCC
Q 001326 159 DR--FGPGSRIIITTRDKWILDN-F----GVHSSNIYEVNGLEYDEARELFCNYAFKENHC-PDDLLALSKCVLKYANGN 230 (1099)
Q Consensus 159 ~~--~~~gsrIiiTTR~~~v~~~-~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~Gl 230 (1099)
.. ...+..||.||........ . ..+. .+.++..+.++-.+++..++-+.... ..++ ..++..+.|.
T Consensus 147 ~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~--~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~ 220 (301)
T 3cf0_A 147 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQ--LIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGF 220 (301)
T ss_dssp HSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCE--EEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSC
T ss_pred hcccCCCCEEEEEecCCccccChHHhcCCccce--EEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCC
Confidence 11 1234567777765432221 1 1233 78999999999999987776432211 1122 2345566776
Q ss_pred chH
Q 001326 231 PLA 233 (1099)
Q Consensus 231 PLa 233 (1099)
|-+
T Consensus 221 sg~ 223 (301)
T 3cf0_A 221 SGA 223 (301)
T ss_dssp CHH
T ss_pred CHH
Confidence 644
No 193
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.13 E-value=1.3e-05 Score=92.71 Aligned_cols=179 Identities=16% Similarity=0.230 Sum_probs=103.6
Q ss_pred CCCCCCccccchhhH---HHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHH
Q 001326 27 VSSDFKGLVGLSSRI---EKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLV 103 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~---~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 103 (1099)
.|...+.+||.+..+ +.+...+..+ ....+.|||++|+||||+|+.+++.....|.. +. . ...+..
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~-a-----~~~~~~ 89 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVER---IS-A-----VTSGVK 89 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE-T-----TTCCHH
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE-e-----ccCCHH
Confidence 455668899999888 6777777643 34678899999999999999999987544321 11 1 223333
Q ss_pred HHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCCCCCCeEEE-EeCCcc--ccc
Q 001326 104 YLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRFGPGSRIII-TTRDKW--ILD 178 (1099)
Q Consensus 104 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIii-TTR~~~--v~~ 178 (1099)
.+...+ ... ......+++.+|+||+++... +.+.|...+.. ....+|. ||.+.. +..
T Consensus 90 ~ir~~~-~~a---------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~ 151 (447)
T 3pvs_A 90 EIREAI-ERA---------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNS 151 (447)
T ss_dssp HHHHHH-HHH---------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCH
T ss_pred HHHHHH-HHH---------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCH
Confidence 322211 111 011124678899999997653 22333322211 1234443 444442 111
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHhhhhcCCC-----CCChhHHHHHHHHHHHhCCCchHHH
Q 001326 179 NFGVHSSNIYEVNGLEYDEARELFCNYAFKEN-----HCPDDLLALSKCVLKYANGNPLALT 235 (1099)
Q Consensus 179 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~GlPLal~ 235 (1099)
.. .....++.+++++.++..+++.+.+-... ....--.+..+.++++++|.+-.+.
T Consensus 152 aL-~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 152 AL-LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HH-HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred HH-hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 11 01122789999999999999987764311 1111223556678888999886543
No 194
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.11 E-value=3.9e-05 Score=87.69 Aligned_cols=184 Identities=15% Similarity=0.039 Sum_probs=100.2
Q ss_pred CCCCccccchhhHHHHHHhhcC----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccC
Q 001326 29 SDFKGLVGLSSRIEKLISLLCV----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESEN 98 (1099)
Q Consensus 29 ~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 98 (1099)
...+.++|.+..++++.+++.. .....+.|.|+|.+|+|||++|++++++.... ++..+.......
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~~ 187 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT----FFNISAASLTSK 187 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE----EEEECSCCC---
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc----EEEeeHHHhhcc
Confidence 3456899999999999988731 01124678899999999999999998875432 222222111100
Q ss_pred CC-CHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh-------------HHHHHhcCC----CC
Q 001326 99 GH-RLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG-------------QLKYLAGGI----DR 160 (1099)
Q Consensus 99 ~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~----~~ 160 (1099)
.. ..... ....+...-...+.+|+||+++... ....+...+ ..
T Consensus 188 ~~g~~~~~-------------------~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 188 YVGEGEKL-------------------VRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp ----CHHH-------------------HHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred ccchHHHH-------------------HHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence 00 00000 1111122223456799999997540 111221111 11
Q ss_pred CCCCCeEEEEeCCcccccc-c--CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHH
Q 001326 161 FGPGSRIIITTRDKWILDN-F--GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL-ALTV 236 (1099)
Q Consensus 161 ~~~gsrIiiTTR~~~v~~~-~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~ 236 (1099)
......||.||........ . .... .+.++..+.++..+++...+-.....- ..+....+++.+.|..- ++..
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~--~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g~~~~~l~~ 324 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIK--RVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDGYSGSDLTA 324 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCE--EEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcce--EEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHHH
Confidence 1223455656654332211 1 1222 688999999999999988774432211 12355678888888655 5555
Q ss_pred Hhh
Q 001326 237 LGS 239 (1099)
Q Consensus 237 lg~ 239 (1099)
+..
T Consensus 325 L~~ 327 (389)
T 3vfd_A 325 LAK 327 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 195
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.11 E-value=1.1e-05 Score=81.63 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=42.2
Q ss_pred CCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 29 SDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 29 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
...+.++|++.+++++.+.+.. ...+.+.|+|++|+||||+|+++++....
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457799999999999999864 23456689999999999999999997644
No 196
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.10 E-value=0.00052 Score=78.05 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=55.9
Q ss_pred hcCCCCCCEEEccCCCCcccC-cccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCC-ccccCCCCCc
Q 001326 636 LEKMEPLEKLALDRSGIKELP-SSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLP-SSIADLNKLR 713 (1099)
Q Consensus 636 l~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~ 713 (1099)
+..+..|+.+.+..+ ++.+. ..+.++.+|+.+.+..+ ....-...+.++.+|+.+.+.++.+..++ ..|.++.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 334444444444332 22222 23445555555555332 11112234556666666666666666553 3566677777
Q ss_pred EEEccCCCCCCCCC--CCCCCCCCEEeccCCCCcccc
Q 001326 714 ELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEIS 748 (1099)
Q Consensus 714 ~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~ 748 (1099)
.+.|..+ +..+.. +.++.+|+.+.+..+ +..+.
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~ 348 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIE 348 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEc
Confidence 7777543 333332 667777777777543 44443
No 197
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.08 E-value=1.2e-05 Score=89.02 Aligned_cols=149 Identities=13% Similarity=0.049 Sum_probs=87.0
Q ss_pred ccccchhhHHHHHHhhcC-------------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc----eeEEEEecccc
Q 001326 33 GLVGLSSRIEKLISLLCV-------------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE----GRCFVSNVRVE 95 (1099)
Q Consensus 33 ~~vGr~~~~~~l~~~l~~-------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~----~~~~~~~~~~~ 95 (1099)
.++|.+..++++.+++.. .......+.|+|++|+|||++|+++++.+..... ..+.+. ....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 599999999888876541 1233456889999999999999999987643221 122221 1111
Q ss_pred ccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh-----------hHHHHHhcCCCCCCCC
Q 001326 96 SENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV-----------GQLKYLAGGIDRFGPG 164 (1099)
Q Consensus 96 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~g 164 (1099)
.....+-. ... ....+... +.-+|+||+++.. .....|...+.....+
T Consensus 111 ~~~~~g~~--~~~----------------~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 111 VGQYIGHT--APK----------------TKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp CCSSTTCH--HHH----------------HHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred hhhccccc--HHH----------------HHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 10000000 000 11111111 2358999999733 3344444443333456
Q ss_pred CeEEEEeCCc----------ccccccCCCCcceEecCCCCHHHHHHHHhhhhc
Q 001326 165 SRIIITTRDK----------WILDNFGVHSSNIYEVNGLEYDEARELFCNYAF 207 (1099)
Q Consensus 165 srIiiTTR~~----------~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 207 (1099)
..||.||... .+...+ +. .+.+++++.++..+++...+-
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R~--~~--~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSRI--AH--HIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHHE--EE--EEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHhC--Ce--EEEcCCcCHHHHHHHHHHHHH
Confidence 6888888643 222222 22 799999999999999987764
No 198
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.0002 Score=80.18 Aligned_cols=176 Identities=21% Similarity=0.229 Sum_probs=101.6
Q ss_pred CCCCccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEecccccc
Q 001326 29 SDFKGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESE 97 (1099)
Q Consensus 29 ~~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 97 (1099)
...+++.|.++.+++|.+.+.. +-.-.+-|.++|++|.|||.||++++++....| +.........
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~s 220 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQ 220 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSC
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhc
Confidence 3446799999999999887652 223457788999999999999999999876543 2222211111
Q ss_pred CCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh----------------HHHHHhcCCCCC
Q 001326 98 NGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG----------------QLKYLAGGIDRF 161 (1099)
Q Consensus 98 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~ 161 (1099)
...+-. ...+++ .+...-...+++|++|+++... .+..++..++.+
T Consensus 221 k~vGes---e~~vr~---------------lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 221 KYIGEG---SRMVRE---------------LFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp SSTTHH---HHHHHH---------------HHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred cccchH---HHHHHH---------------HHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 111111 111111 1112223568999999996331 122233222211
Q ss_pred --CCCCeEEEEeCCcccccc----c-CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCC-hhHHHHHHHHHHHhCCCch
Q 001326 162 --GPGSRIIITTRDKWILDN----F-GVHSSNIYEVNGLEYDEARELFCNYAFKENHCP-DDLLALSKCVLKYANGNPL 232 (1099)
Q Consensus 162 --~~gsrIiiTTR~~~v~~~----~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPL 232 (1099)
..+..||.||-....+.. . ..+. .++++..+.++..++|..+.-+..... .++ .++++.+.|.--
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~--~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~SG 355 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDR--KIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCSG 355 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCC--EEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCCH
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCce--EEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCCH
Confidence 234456667754443221 1 2355 899999999999999988774432222 233 445666777553
No 199
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=0.00017 Score=80.63 Aligned_cols=184 Identities=15% Similarity=0.198 Sum_probs=104.5
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc-CceeEEEEeccccccCCCCHHHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE-FEGRCFVSNVRVESENGHRLVYLR 106 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~ 106 (1099)
|.....++|.+..++.+...+..+ +...+.++|++|+||||+|++++..+... +...+.-.+. + ...+...+.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~-~~~~~~~ir 94 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---S-DDRGIDVVR 94 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---T-SCCSHHHHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---c-ccccHHHHH
Confidence 444567899998889998888644 22238899999999999999999976432 2211111111 1 222333332
Q ss_pred HHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCcc-cccccCCC
Q 001326 107 ERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDKW-ILDNFGVH 183 (1099)
Q Consensus 107 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~~~~ 183 (1099)
+ .+..+..... ...+.+-++|+|+++.. ...+.|...+.......++|++|.... +..... .
T Consensus 95 ~-~i~~~~~~~~-------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~-s 159 (340)
T 1sxj_C 95 N-QIKDFASTRQ-------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL-S 159 (340)
T ss_dssp T-HHHHHHHBCC-------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-T
T ss_pred H-HHHHHHhhcc-------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH-h
Confidence 2 2222211100 01234678899999653 333334333222234567777765432 211111 1
Q ss_pred CcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 184 SSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 184 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
....+++.+++.++..+.+...+-.....- -.+..+.+++.++|.+--+
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~~i--~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEKLKL--SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTTCCB--CHHHHHHHHHHHTTCHHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 112689999999999888877653222111 1245667888999988743
No 200
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.84 E-value=0.00021 Score=79.64 Aligned_cols=174 Identities=14% Similarity=0.105 Sum_probs=98.7
Q ss_pred hhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCce---------------------eEEEEeccccc
Q 001326 38 SSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEG---------------------RCFVSNVRVES 96 (1099)
Q Consensus 38 ~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~---------------------~~~~~~~~~~~ 96 (1099)
+...+.+...+..+ .-.+.+.++|+.|+||||+|+++.+.+...... ..++. .....
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~-~~~~~ 85 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA-PEKGK 85 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC-CCTTC
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe-ccccC
Confidence 44556666666533 224568899999999999999999876433210 11111 00000
Q ss_pred cCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCc
Q 001326 97 ENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDK 174 (1099)
Q Consensus 97 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~ 174 (1099)
...++..+. ++...+... ...+++-++|+|+++.. +..+.|...+....++..+|++|.+.
T Consensus 86 -~~~~i~~ir-~l~~~~~~~---------------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 86 -NTLGVDAVR-EVTEKLNEH---------------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp -SSBCHHHHH-HHHHHTTSC---------------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred -CCCCHHHHH-HHHHHHhhc---------------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 111221111 111111000 01246778899999864 33445554444434566777777654
Q ss_pred c-cccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 001326 175 W-ILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLG 238 (1099)
Q Consensus 175 ~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 238 (1099)
+ +..... .....++++++++++..+++...+ .. . .+.+..+++.++|.|..+..+.
T Consensus 149 ~~l~~ti~-SRc~~~~~~~~~~~~~~~~L~~~~---~~-~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 149 ERLLATLR-SRCRLHYLAPPPEQYAVTWLSREV---TM-S---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp GGSCHHHH-TTSEEEECCCCCHHHHHHHHHHHC---CC-C---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred HhCcHHHh-hcceeeeCCCCCHHHHHHHHHHhc---CC-C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 3 333221 112379999999999999998775 11 1 2345678899999998665443
No 201
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.81 E-value=0.00039 Score=77.40 Aligned_cols=261 Identities=18% Similarity=0.126 Sum_probs=134.4
Q ss_pred CCCCCccccchhhHHHHHHhhcCC---CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVG---FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVY 104 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 104 (1099)
+..-+.++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...|. ... . . .......
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s-g-~---~~~~~~~ 92 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS-G-P---VLVKQGD 92 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE-T-T---TCCSHHH
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-c-h---HhcCHHH
Confidence 445567899988888877766432 223467899999999999999999998754332 111 0 0 0001111
Q ss_pred HHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCC--------C----------CC
Q 001326 105 LRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRF--------G----------PG 164 (1099)
Q Consensus 105 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~--------~----------~g 164 (1099)
+. .+...+. ++-++++|+++... ..+.+....... + +.
T Consensus 93 l~---------------------~~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 93 MA---------------------AILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp HH---------------------HHHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred HH---------------------HHHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 10 0111122 33466788886432 223222111000 0 11
Q ss_pred CeEE-EEeCCcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhc--
Q 001326 165 SRII-ITTRDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLGSFF-- 241 (1099)
Q Consensus 165 srIi-iTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L-- 241 (1099)
..++ .|++...+.......-...+.+++.+.++-.+++.+.+-..... ...+.+..|++.++|.|-.+..+...+
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIRLTKRVRD 228 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 2233 34444333211111111158899999999999998876322211 223567889999999997543332211
Q ss_pred ----CC---CCHHHHHHHHHHHhcCCCchhHHHHhhcccCCChhhhhHHhhhccccccc--hHhHHHHHhcCCCc-hhhh
Q 001326 242 ----HQ---KSKPDWEKALEKINRISDPDIYDVLKISYNDLRPEEKSIFLDIACFVVGE--EKDFVTSILEDPNI-AHYG 311 (1099)
Q Consensus 242 ----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~~~~~l~~~~~-~~~~ 311 (1099)
.+ -+.+.-+.+++.+. .....++...+..+..++-.+.+. ..+.+...+..... .+..
T Consensus 229 ~a~~~~~~~It~~~v~~al~~~~------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~ 296 (334)
T 1in4_A 229 MLTVVKADRINTDIVLKTMEVLN------------IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEV 296 (334)
T ss_dssp HHHHHTCSSBCHHHHHHHHHHHT------------CCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHhC------------CCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHH
Confidence 11 13333444444332 122345666556655544433332 22334443332211 1111
Q ss_pred HH-HHhhccceEEecCCeEEeh
Q 001326 312 LS-VLIERSLVTISKFNKIEMH 332 (1099)
Q Consensus 312 l~-~L~~~sLi~~~~~~~~~mH 332 (1099)
.+ .|...++|+....+++.-.
T Consensus 297 ~~~~l~~~g~i~~~~~gr~~~~ 318 (334)
T 1in4_A 297 YEPYLLQAGFLARTPRGRIVTE 318 (334)
T ss_dssp THHHHHHTTSEEEETTEEEECH
T ss_pred HHHHHHHcCCeecccccHHhhH
Confidence 22 7888999999877776543
No 202
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.79 E-value=4.5e-06 Score=84.53 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=30.4
Q ss_pred CCCCEEeccCCCCcc-----cccccCCCCCCCEEEc--cCCCCcc-----ccccccCCCCCCEEeecCC
Q 001326 732 SSLRTLTLSGCGIIE-----ISQDICCLSSLESLNL--AENNFES-----LPSSISQLSCLRRLCLRNC 788 (1099)
Q Consensus 732 ~~L~~L~Ls~~~l~~-----l~~~~~~l~sL~~L~L--~~n~l~~-----lp~~l~~l~~L~~L~L~~c 788 (1099)
++|++|+|++|.+.. +...+...++|++|+| ++|.+.. +...+...++|++|+|++|
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 445555555555552 3444555556666666 5565552 3344444556666666554
No 203
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.78 E-value=3e-05 Score=74.97 Aligned_cols=47 Identities=23% Similarity=0.166 Sum_probs=35.8
Q ss_pred ccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 33 GLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 33 ~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+++|++..++++.+.+..-.....-|.|+|.+|+|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999888775322222346799999999999999999854
No 204
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.73 E-value=0.00016 Score=84.50 Aligned_cols=180 Identities=15% Similarity=0.127 Sum_probs=99.2
Q ss_pred CCCccccchhhHHHHHHhhcCC-----------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccC
Q 001326 30 DFKGLVGLSSRIEKLISLLCVG-----------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESEN 98 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 98 (1099)
..+.++|.+..++++.+++... ....+-|.|+|.+|+|||++|+++++..... ++..+.......
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~----fv~vn~~~l~~~ 277 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSK 277 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE----EEEEEHHHHHTS
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC----EEEEEchHhhhh
Confidence 3457999999999998887531 2334568899999999999999999876332 222222111101
Q ss_pred CCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh-------------hHHHHHhcCCCC--CCC
Q 001326 99 GHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV-------------GQLKYLAGGIDR--FGP 163 (1099)
Q Consensus 99 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~--~~~ 163 (1099)
..+- .... ....+.....+++.+|+||+++.. .....|...+.. ...
T Consensus 278 ~~g~--~~~~----------------~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 278 LAGE--SESN----------------LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp CTTH--HHHH----------------HHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred hcch--hHHH----------------HHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 1100 0000 122233334466789999999421 111222221111 123
Q ss_pred CCeEEEEeCCccc-cccc----CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCCh-hHHHHHHHHHHHhCCC-chHHHH
Q 001326 164 GSRIIITTRDKWI-LDNF----GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPD-DLLALSKCVLKYANGN-PLALTV 236 (1099)
Q Consensus 164 gsrIiiTTR~~~v-~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~-~~~~~~~~i~~~~~Gl-PLal~~ 236 (1099)
+.+||.||..... -... .... .+.++..+.++-.+++..++.......+ .+ .+++..+.|. +-.+..
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~--~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDR--EVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAA 413 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCE--EEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCce--EEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHH
Confidence 4466666654422 1111 1233 6899999999999999888743222111 22 3455666664 434444
Q ss_pred H
Q 001326 237 L 237 (1099)
Q Consensus 237 l 237 (1099)
+
T Consensus 414 L 414 (489)
T 3hu3_A 414 L 414 (489)
T ss_dssp H
T ss_pred H
Confidence 4
No 205
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00017 Score=81.98 Aligned_cols=176 Identities=15% Similarity=0.147 Sum_probs=100.1
Q ss_pred CCCCCCccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEecccc
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVE 95 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 95 (1099)
|....+++.|.++.+++|.+.+.. +-.-.+-|.++|++|.|||.+|++++++....| +.......
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l 251 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQL 251 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhh
Confidence 344457899999999998876531 223467788999999999999999999876543 22222221
Q ss_pred ccCCCCHH-HHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh-------h---------HHHHHhcCC
Q 001326 96 SENGHRLV-YLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV-------G---------QLKYLAGGI 158 (1099)
Q Consensus 96 ~~~~~~~~-~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------~---------~~~~l~~~~ 158 (1099)
.....+-. ...+.+.. ..-...+++|++|+++.. . .+..++..+
T Consensus 252 ~~~~vGese~~ir~lF~-------------------~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~l 312 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFA-------------------LAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQL 312 (434)
T ss_dssp CSSCSSHHHHHHHHHHH-------------------HHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHH-------------------HHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHh
Confidence 11112211 11111111 111245789999998522 0 122233333
Q ss_pred CCC--CCCCeEEEEeCCccccccc-----CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCC-hhHHHHHHHHHHHhCCC
Q 001326 159 DRF--GPGSRIIITTRDKWILDNF-----GVHSSNIYEVNGLEYDEARELFCNYAFKENHCP-DDLLALSKCVLKYANGN 230 (1099)
Q Consensus 159 ~~~--~~gsrIiiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~Gl 230 (1099)
..+ ..+..||.||.....+... ..+. .++++..+.++..++|..++-+..... -++ ..+++.+.|.
T Consensus 313 dg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~--~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 313 DGFSSDDRVKVLAATNRVDVLDPALLRSGRLDR--KIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp TTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEE--EEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred hccCCCCCEEEEEeCCCchhcCHhHhcCCceeE--EEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 322 2344556677655433211 2344 789999999999999987764322211 123 3456667665
Q ss_pred c
Q 001326 231 P 231 (1099)
Q Consensus 231 P 231 (1099)
-
T Consensus 387 s 387 (434)
T 4b4t_M 387 N 387 (434)
T ss_dssp C
T ss_pred C
Confidence 4
No 206
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.71 E-value=1.8e-05 Score=80.01 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=8.4
Q ss_pred ccCCCCCcEEEeCCc
Q 001326 588 IESLPNLKILNLGFC 602 (1099)
Q Consensus 588 i~~l~~L~~L~L~~~ 602 (1099)
+...++|++|+|++|
T Consensus 32 l~~~~~L~~L~L~~n 46 (185)
T 1io0_A 32 QNNDPDLEEVNLNNI 46 (185)
T ss_dssp HTTCTTCCEEECTTC
T ss_pred HhcCCCCCEEEecCC
Confidence 444555666666555
No 207
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00038 Score=79.19 Aligned_cols=177 Identities=23% Similarity=0.259 Sum_probs=101.7
Q ss_pred CCCCCccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccc
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVES 96 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 96 (1099)
....+++.|.++.+++|.+.+.. +-.-.+-|.++|++|.|||+||+++++.....| +........
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~ 252 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIV 252 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTC
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhc
Confidence 33456789999999988887642 223457888999999999999999999876543 222222111
Q ss_pred cCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh----------------HHHHHhcCCCC
Q 001326 97 ENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG----------------QLKYLAGGIDR 160 (1099)
Q Consensus 97 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~ 160 (1099)
....+-. ...++ ......-...+.+|++|+++... .+..++..++.
T Consensus 253 sk~~Ges---e~~ir---------------~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 253 DKYIGES---ARIIR---------------EMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp CSSSSHH---HHHHH---------------HHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred cccchHH---HHHHH---------------HHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 1111111 01111 11112223578999999996321 12223322221
Q ss_pred --CCCCCeEEEEeCCccccccc----C-CCCcceEecCCCCHHHHHHHHhhhhcCCCCC-ChhHHHHHHHHHHHhCCCch
Q 001326 161 --FGPGSRIIITTRDKWILDNF----G-VHSSNIYEVNGLEYDEARELFCNYAFKENHC-PDDLLALSKCVLKYANGNPL 232 (1099)
Q Consensus 161 --~~~gsrIiiTTR~~~v~~~~----~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlPL 232 (1099)
...+..||.||-....+... | .+. .++++..+.++..++|..+..+.... ..++ ..+++.+.|.--
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRpGRfD~--~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~sG 388 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRPGRLDR--KVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFNG 388 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTSTTSEEE--EECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCCH
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCCCccce--eeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCCH
Confidence 12345677777655433221 1 244 78999999999999998877543222 1233 345666776543
No 208
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.69 E-value=3.2e-05 Score=79.48 Aligned_cols=61 Identities=20% Similarity=0.121 Sum_probs=40.9
Q ss_pred CCCccccchh----hHHHHHHhhcCCCCC--EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 30 DFKGLVGLSS----RIEKLISLLCVGFPD--FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 30 ~~~~~vGr~~----~~~~l~~~l~~~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
..+.|++.+. .++.+.+++...... .+.+.|+|.+|+||||||+++++....+....+|+.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4567887653 334455555432221 267889999999999999999998766544455553
No 209
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.68 E-value=2.3e-05 Score=84.65 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=85.9
Q ss_pred CCCCCccccchhhHHHHHHhhcC----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEecccccc
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCV----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESE 97 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 97 (1099)
....+.++|.+..++++.+.+.. +....+-|.|+|++|+|||++|+++++.....|-. + +.....
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~~~~- 81 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGSSFI- 81 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSCTTT-
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chHHHH-
Confidence 33457899999998888877641 11112347799999999999999999987543311 1 110000
Q ss_pred CCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh-----------------HHHHHhcCCCC
Q 001326 98 NGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG-----------------QLKYLAGGIDR 160 (1099)
Q Consensus 98 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-----------------~~~~l~~~~~~ 160 (1099)
.. .... ........+......++.+|+|||++... .+..+...+..
T Consensus 82 ~~-------------~~~~----~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 82 EM-------------FVGL----GASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp TS-------------CSSS----CSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred Hh-------------hcch----HHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 00 0000 00001122222223456899999996442 12223333322
Q ss_pred CC---CCCeEEEEeCCccccc-cc----CCCCcceEecCCCCHHHHHHHHhhhhc
Q 001326 161 FG---PGSRIIITTRDKWILD-NF----GVHSSNIYEVNGLEYDEARELFCNYAF 207 (1099)
Q Consensus 161 ~~---~gsrIiiTTR~~~v~~-~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 207 (1099)
.. ....||.||....... .. .... .+.++.++.++..+++...+-
T Consensus 145 ~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~--~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 145 FGSENAPVIVLAATNRPEILDPALMRPGRFDR--QVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp SSCSCSCCEEEECBSCCTTSCGGGGSSSSSCC--CCBCCCCCTTTHHHHHHHHTS
T ss_pred cccCCCCEEEEEecCCchhcCHhHcCCCCCCe--EEEecCcCHHHHHHHHHHHHh
Confidence 11 1245666776553222 11 1223 688889999998888877653
No 210
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.67 E-value=0.00028 Score=89.05 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=41.5
Q ss_pred CCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 29 SDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 29 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
...+.+|||+.+++++...+... ..+.+.++|.+|+||||+|+.+++++..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34467999999999999988643 2345689999999999999999998743
No 211
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.001 Score=75.40 Aligned_cols=174 Identities=16% Similarity=0.151 Sum_probs=99.3
Q ss_pred CCCCccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEecccccc
Q 001326 29 SDFKGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESE 97 (1099)
Q Consensus 29 ~~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 97 (1099)
...+++.|.++.+++|.+.+.. +-.-.+-|.++|++|.|||+||++++++....| +.........
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~s 281 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQ 281 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhc
Confidence 3446799999999999886531 224467788999999999999999999876543 2222211111
Q ss_pred CCCCHH-HHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh----------------HHHHHhcCCCC
Q 001326 98 NGHRLV-YLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG----------------QLKYLAGGIDR 160 (1099)
Q Consensus 98 ~~~~~~-~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~ 160 (1099)
...+-. ...+. .+...-...+++|++|+++... .+..++..+..
T Consensus 282 k~vGesek~ir~-------------------lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 342 (467)
T 4b4t_H 282 KYVGEGARMVRE-------------------LFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG 342 (467)
T ss_dssp CSSSHHHHHHHH-------------------HHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS
T ss_pred ccCCHHHHHHHH-------------------HHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc
Confidence 111111 11111 1122223568999999996331 11222222221
Q ss_pred C--CCCCeEEEEeCCcccccc----c-CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCC-hhHHHHHHHHHHHhCCCc
Q 001326 161 F--GPGSRIIITTRDKWILDN----F-GVHSSNIYEVNGLEYDEARELFCNYAFKENHCP-DDLLALSKCVLKYANGNP 231 (1099)
Q Consensus 161 ~--~~gsrIiiTTR~~~v~~~----~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlP 231 (1099)
. ..+..||.||-....+.. . ..+. .++++..+.++..++|..++-+..... -++ ..+++.+.|.-
T Consensus 343 ~~~~~~ViVIaATNrpd~LDpALlRpGRFD~--~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 343 FDPRGNIKVMFATNRPNTLDPALLRPGRIDR--KVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp SCCTTTEEEEEECSCTTSBCHHHHSTTTCCE--EECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred cCCCCcEEEEeCCCCcccCChhhhccccccE--EEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 1 223345566644433221 1 2354 799999999999999988774432221 123 34566677754
No 212
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=1.5e-05 Score=84.96 Aligned_cols=77 Identities=29% Similarity=0.322 Sum_probs=43.6
Q ss_pred cCCCCCcEEEccCCCCCCCCCCC----CCCCCCEEeccCCCCccccc--ccCCCCCCCEEEccCCCCc-ccc-------c
Q 001326 707 ADLNKLRELCLSGCRGFALPPLS----TLSSLRTLTLSGCGIIEISQ--DICCLSSLESLNLAENNFE-SLP-------S 772 (1099)
Q Consensus 707 ~~l~~L~~L~L~~~~~~~l~~l~----~l~~L~~L~Ls~~~l~~l~~--~~~~l~sL~~L~L~~n~l~-~lp-------~ 772 (1099)
.++++|+.|+|++|.+..++.+. .+++|+.|+|++|.+..+.. .+..+ +|++|+|++|.+. .+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 34666666666666665554332 56666666666666665421 12233 6777777777665 233 1
Q ss_pred cccCCCCCCEEe
Q 001326 773 SISQLSCLRRLC 784 (1099)
Q Consensus 773 ~l~~l~~L~~L~ 784 (1099)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245566666665
No 213
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.63 E-value=0.00064 Score=79.37 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=81.6
Q ss_pred CCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC------ceeEEEEeccccccCCCCHH
Q 001326 30 DFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF------EGRCFVSNVRVESENGHRLV 103 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 103 (1099)
..+.+|||+.+++++...+.... ..-+.|+|.+|+|||++|+.+++.+...+ ...++..+..
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------
Confidence 44679999999999999986422 23457999999999999999999874432 1122221110
Q ss_pred HHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCCcccccccCC-
Q 001326 104 YLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRDKWILDNFGV- 182 (1099)
Q Consensus 104 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~- 182 (1099)
... ...........+...-..++.+|++| ...+....|...+. ....++|.+|...........
T Consensus 246 -------~~~----~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 246 -------TKY----RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred -------ccc----cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcC
Confidence 000 00000112233333334567889999 22222223333332 123456655554431110000
Q ss_pred ----CCcceEecCCCCHHHHHHHHhhhh
Q 001326 183 ----HSSNIYEVNGLEYDEARELFCNYA 206 (1099)
Q Consensus 183 ----~~~~~~~l~~L~~~ea~~Lf~~~a 206 (1099)
..-..+.++.++.++..+++...+
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 111268999999999999998655
No 214
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.63 E-value=7.8e-05 Score=74.97 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=33.9
Q ss_pred CCcccc----chhhHHHHHHhhcC-CCCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 31 FKGLVG----LSSRIEKLISLLCV-GFPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 31 ~~~~vG----r~~~~~~l~~~l~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+.+++ ....++.+.+++.. ....-+.++|+|++|+||||||+++++.+.
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345554 33444455555432 112346889999999999999999999775
No 215
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.62 E-value=0.00067 Score=78.46 Aligned_cols=175 Identities=19% Similarity=0.164 Sum_probs=98.2
Q ss_pred CCCccccchhhHHHHHHhhcC----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCC
Q 001326 30 DFKGLVGLSSRIEKLISLLCV----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENG 99 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 99 (1099)
..++++|.+..++++.+.+.. +..-.+-|.|+|++|+|||+||++++++....| +..+........
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHH
Confidence 446799999988887776531 111123478999999999999999999765433 222222111011
Q ss_pred CCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh----------------hHHHHHhcCCCCC--
Q 001326 100 HRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV----------------GQLKYLAGGIDRF-- 161 (1099)
Q Consensus 100 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~-- 161 (1099)
.+.. .+- ....+.+.....+.+|+||+++.. ..+..+...+..+
T Consensus 90 ~g~~---~~~---------------~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 90 VGVG---AAR---------------VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp TTHH---HHH---------------HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred hccc---HHH---------------HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 1110 000 122233344467889999999542 1123333222111
Q ss_pred CCCCeEEEEeCCcccccc-c----CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 001326 162 GPGSRIIITTRDKWILDN-F----GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNP 231 (1099)
Q Consensus 162 ~~gsrIiiTTR~~~v~~~-~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 231 (1099)
..+..||.||.....+.. . ..+. .+.++..+.++-.+++..++-......+. + ...+++.+.|..
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~--~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~-l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDK--KIVVDPPDMLGRKKILEIHTRNKPLAEDV--N-LEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCE--EEECCCCCHHHHHHHHHHHHTTSCBCTTC--C-HHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCccee--EeecCCCCHHHHHHHHHHHHHhCCCcchh--h-HHHHHHhcCCCc
Confidence 235567777766544321 1 1233 78899999988888888776433222111 0 233677778877
No 216
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00042 Score=77.70 Aligned_cols=176 Identities=17% Similarity=0.206 Sum_probs=99.7
Q ss_pred CCCCCCccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEecccc
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVE 95 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 95 (1099)
+....+++.|.++.+++|.+.+.. +-.-.+-|.++|++|.|||.||++++++....| +.....+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l 252 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSEL 252 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGG
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHh
Confidence 334456789999999988887641 223457788999999999999999999876543 22222221
Q ss_pred ccCCCCHH-HHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh----------------HHHHHhcCC
Q 001326 96 SENGHRLV-YLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG----------------QLKYLAGGI 158 (1099)
Q Consensus 96 ~~~~~~~~-~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~ 158 (1099)
.....+-. ...+.+ +...-...+.+|++|+++... .+..++...
T Consensus 253 ~sk~vGesek~ir~l-------------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~l 313 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQI-------------------FKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL 313 (437)
T ss_dssp CCSSSSHHHHHHHHH-------------------HHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHH-------------------HHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHh
Confidence 11111111 111111 111223567899999986321 122232222
Q ss_pred CCC--CCCCeEEEEeCCcccccc-c----CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCC-hhHHHHHHHHHHHhCCC
Q 001326 159 DRF--GPGSRIIITTRDKWILDN-F----GVHSSNIYEVNGLEYDEARELFCNYAFKENHCP-DDLLALSKCVLKYANGN 230 (1099)
Q Consensus 159 ~~~--~~gsrIiiTTR~~~v~~~-~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~Gl 230 (1099)
+.. ..+..||.||-....+.. . ..+. .++++..+.++..++|..++-+..... -++ ..+++.+.|.
T Consensus 314 Dg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~--~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 314 DGFDDRGDVKVIMATNKIETLDPALIRPGRIDR--KILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp HHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEE--EECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred hCcCCCCCEEEEEeCCChhhcCHHHhcCCceeE--EEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 211 234456667755443322 1 1233 688999999999999988774432222 133 3455666665
Q ss_pred c
Q 001326 231 P 231 (1099)
Q Consensus 231 P 231 (1099)
-
T Consensus 388 S 388 (437)
T 4b4t_I 388 S 388 (437)
T ss_dssp C
T ss_pred C
Confidence 4
No 217
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.59 E-value=0.00013 Score=80.47 Aligned_cols=50 Identities=22% Similarity=0.209 Sum_probs=39.4
Q ss_pred CccccchhhHHHHHHhhcCC------C-CCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 32 KGLVGLSSRIEKLISLLCVG------F-PDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
+.++|.+..++.+...+... . .....+.++|.+|+||||+|+++++....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 35889999998888877532 1 11357899999999999999999997644
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.54 E-value=0.00057 Score=85.39 Aligned_cols=155 Identities=13% Similarity=0.147 Sum_probs=86.7
Q ss_pred CCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc------CceeEEEEeccccc---cCCC
Q 001326 30 DFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE------FEGRCFVSNVRVES---ENGH 100 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~~~~~~~---~~~~ 100 (1099)
..+.++||+.+++++.+.+... ...-+.|+|.+|+||||+|+.+++++... ....+|..+..... ....
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g 261 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccc
Confidence 3457999999999999998643 23456799999999999999999976432 12233332211100 0000
Q ss_pred CHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh----------hHHHHHhcCCCCCCCCCeEEEE
Q 001326 101 RLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV----------GQLKYLAGGIDRFGPGSRIIIT 170 (1099)
Q Consensus 101 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------~~~~~l~~~~~~~~~gsrIiiT 170 (1099)
...... ...+...-..++.+|++||++.. .+...+....-. ..+.++|.+
T Consensus 262 ~~e~~l-------------------~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~a 321 (758)
T 1r6b_X 262 DFEKRF-------------------KALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGS 321 (758)
T ss_dssp CHHHHH-------------------HHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEE
T ss_pred hHHHHH-------------------HHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEE
Confidence 111111 11122222345789999999754 122233322221 234566666
Q ss_pred eCCcccccccCC-----CCcceEecCCCCHHHHHHHHhhhh
Q 001326 171 TRDKWILDNFGV-----HSSNIYEVNGLEYDEARELFCNYA 206 (1099)
Q Consensus 171 TR~~~v~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 206 (1099)
|........... ..-..+.++.++.++..+++...+
T Consensus 322 t~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp ECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred eCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 654332111100 011268999999999998887544
No 219
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.49 E-value=3.6e-05 Score=75.95 Aligned_cols=85 Identities=16% Similarity=0.224 Sum_probs=46.9
Q ss_pred CCceEEECCCCCcccc-cccccccCCccEEeccCCCCCCcC--CCCCCC----CCccEEEeeCCCCCCc-cCccccCCCC
Q 001326 455 ENLIELDLPYSKVEQL-WEGEKEAFKLKSIDLHQSHNLTRI--PKQSEA----PNLERINLWNCKNLLY-IPSHIQNFNN 526 (1099)
Q Consensus 455 ~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~--~~~~~l----~~L~~L~L~~~~~l~~-lp~~i~~l~~ 526 (1099)
.+|+.||++++.|+.. ...+..+++|++|+|++|..++.- ..++.+ ++|++|+|++|..++. --..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4566666666665421 133456677777777777644331 112332 3577777777764432 2234556666
Q ss_pred CCEEEcCCCCCcc
Q 001326 527 LSMLSLRDCISLS 539 (1099)
Q Consensus 527 L~~L~L~~~~~l~ 539 (1099)
|++|+|++|+.++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 7777776665444
No 220
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.49 E-value=9.9e-05 Score=72.77 Aligned_cols=96 Identities=14% Similarity=0.159 Sum_probs=58.6
Q ss_pred ccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCcc-chhhcCC----CCCCEEEccCCC-Ccc-c
Q 001326 583 EVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESF-PEILEKM----EPLEKLALDRSG-IKE-L 655 (1099)
Q Consensus 583 ~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~-~~~l~~l----~~L~~L~L~~~~-l~~-l 655 (1099)
.+|.....-.+|+.||+++|.+....-..+.++++|++|+|++|...+.. -..+..+ ++|++|+|++|. ++. -
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 34443323346788888888766555555677788888888888755432 2334443 367777777763 552 1
Q ss_pred CcccccCCCCcEEEccCCCCCCc
Q 001326 656 PSSIENLEGLKELQLMCCSKLGS 678 (1099)
Q Consensus 656 p~~l~~l~~L~~L~L~~~~~l~~ 678 (1099)
-..+..+++|++|++++|+..+.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 12355677788888877775543
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.48 E-value=0.0016 Score=69.47 Aligned_cols=155 Identities=18% Similarity=0.117 Sum_probs=83.9
Q ss_pred CCCCCccccchhhHHHHHHhhcC--C--------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEecccccc
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCV--G--------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESE 97 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 97 (1099)
....+.++|.+..++++.+.+.. . ..-.+-|.|+|++|+||||+|+++++.....| +.+. ......
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~ 83 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVE 83 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTT
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHH
Confidence 34557899999888877665431 0 11234578999999999999999999764332 2221 111110
Q ss_pred CCCCHHHHHHHHHHHHhcccccccCCC-hhHHHHHHhcCCeEEEEEeCCCCh----------------hHHHHHhcCCCC
Q 001326 98 NGHRLVYLRERVLSEIFEENIKIETPC-LPEYIGERLRRMKVLIVLDDVNKV----------------GQLKYLAGGIDR 160 (1099)
Q Consensus 98 ~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~ 160 (1099)
...+ .... ....+.......+.++++|+++.. ..+..+...+..
T Consensus 84 ~~~~-------------------~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (257)
T 1lv7_A 84 MFVG-------------------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG 144 (257)
T ss_dssp SCCC-------------------CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHT
T ss_pred Hhhh-------------------hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhC
Confidence 0000 0000 112222333345679999998321 112222221111
Q ss_pred --CCCCCeEEEEeCCccccc-cc----CCCCcceEecCCCCHHHHHHHHhhhhc
Q 001326 161 --FGPGSRIIITTRDKWILD-NF----GVHSSNIYEVNGLEYDEARELFCNYAF 207 (1099)
Q Consensus 161 --~~~gsrIiiTTR~~~v~~-~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 207 (1099)
...+..||.||....... .. ..+. .+.++..+.++-.+++..++-
T Consensus 145 ~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~--~i~i~~P~~~~r~~il~~~~~ 196 (257)
T 1lv7_A 145 FEGNEGIIVIAATNRPDVLDPALLRPGRFDR--QVVVGLPDVRGREQILKVHMR 196 (257)
T ss_dssp CCSSSCEEEEEEESCTTTSCGGGGSTTSSCE--EEECCCCCHHHHHHHHHHHHT
T ss_pred cccCCCEEEEEeeCCchhCCHHHcCCCcCCe--EEEeCCCCHHHHHHHHHHHHh
Confidence 123446666775543221 11 1233 688888899888888877653
No 222
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.44 E-value=0.00034 Score=77.03 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=38.8
Q ss_pred CccccchhhHHHHHHhhcC------------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 32 KGLVGLSSRIEKLISLLCV------------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
+.++|.+..++.+...+.. .......+.|+|.+|+|||++|+++++....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4689999999888877643 0112356779999999999999999998743
No 223
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.42 E-value=0.00013 Score=78.61 Aligned_cols=50 Identities=24% Similarity=0.230 Sum_probs=34.7
Q ss_pred CCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 31 FKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+.++|.+..++++.+.+..-......|.|+|.+|+|||++|+++++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 35689999999888776643112224677999999999999999998654
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.40 E-value=0.0026 Score=79.25 Aligned_cols=150 Identities=15% Similarity=0.124 Sum_probs=82.7
Q ss_pred CCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC------ceeEEEEeccccccCCCCHH
Q 001326 30 DFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF------EGRCFVSNVRVESENGHRLV 103 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 103 (1099)
..+.+|||+.+++++...+.... ..-+.++|.+|+|||++|+.+++.+.... ...++..+.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------
Confidence 34679999999999999986432 23467999999999999999999864321 112221111
Q ss_pred HHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCCcccccccCCC
Q 001326 104 YLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRDKWILDNFGVH 183 (1099)
Q Consensus 104 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~ 183 (1099)
...............+......++.+|++| ........+...+. ....++|.||...........+
T Consensus 245 ----------g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 ----------GTKYRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred ----------cccccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 000000001113333444444677899999 22222233333332 2235666666544311100000
Q ss_pred -----CcceEecCCCCHHHHHHHHhhhh
Q 001326 184 -----SSNIYEVNGLEYDEARELFCNYA 206 (1099)
Q Consensus 184 -----~~~~~~l~~L~~~ea~~Lf~~~a 206 (1099)
.-..+.++.++.++..+++...+
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11268999999999999998554
No 225
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0013 Score=74.74 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=42.2
Q ss_pred CCCccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 30 DFKGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
..+++.|.++.+++|.+.+.. +-.-.+-|.++|++|.|||++|+++++.....
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 346789999999988887641 23345778899999999999999999987544
No 226
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.28 E-value=5.1e-05 Score=73.05 Aligned_cols=49 Identities=18% Similarity=0.012 Sum_probs=34.4
Q ss_pred CccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 32 KGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
-.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+++++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3589999999888887753111223467999999999999999988643
No 227
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.26 E-value=0.00085 Score=82.13 Aligned_cols=175 Identities=16% Similarity=0.154 Sum_probs=97.4
Q ss_pred CCccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCC
Q 001326 31 FKGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENG 99 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 99 (1099)
.+++.|.++.+++|.+.+.. +-.-.+-|.++|++|+|||+||++++++....| +..+..+.....
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~----~~v~~~~l~sk~ 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKL 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE----EEEEHHHHHSSC
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE----EEEEhHHhhccc
Confidence 35789999999888887641 123357788999999999999999999765432 222211111011
Q ss_pred CCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh-------------HHHHHhcCCCCC--CCC
Q 001326 100 HRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG-------------QLKYLAGGIDRF--GPG 164 (1099)
Q Consensus 100 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~--~~g 164 (1099)
.+-. +.. +...+....+..+.+|+||+++... ....|....... ..+
T Consensus 279 ~ges---e~~---------------lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 279 AGES---ESN---------------LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp TTHH---HHH---------------HHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred chHH---HHH---------------HHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 1100 000 1222333345678999999985321 122222221111 123
Q ss_pred CeEEEEeCCccccc-cc----CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCC-hhHHHHHHHHHHHhCCCchH
Q 001326 165 SRIIITTRDKWILD-NF----GVHSSNIYEVNGLEYDEARELFCNYAFKENHCP-DDLLALSKCVLKYANGNPLA 233 (1099)
Q Consensus 165 srIiiTTR~~~v~~-~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLa 233 (1099)
..||.||....... .. ..+. .++++..+.++-.+++..+.-+..... .+ ...+++.+.|.--|
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~--~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsga 409 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDR--EVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGA 409 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCE--EEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCHH
T ss_pred EEEEEecCChhhcCHHHhCCcccce--EEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCHH
Confidence 34555554433221 11 2344 789999999999999987764322211 12 23466667776533
No 228
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.26 E-value=0.0003 Score=77.15 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 32 KGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+.++|++..+.++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 468999999998888776322223456799999999999999999854
No 229
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.24 E-value=0.00024 Score=75.53 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=30.3
Q ss_pred ccccEEeccCCCCCC--ccchhhcCCCCCCEEEccCCCCcccCcccccCC--CCcEEEccCCCCCCcc
Q 001326 616 KYLRCLYLLDCSDLE--SFPEILEKMEPLEKLALDRSGIKELPSSIENLE--GLKELQLMCCSKLGSL 679 (1099)
Q Consensus 616 ~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~--~L~~L~L~~~~~l~~l 679 (1099)
++|+.|+|++|.... .++..+..+++|+.|+|++|.++.+ ..+..+. +|++|++++|+..+.+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCcccc
Confidence 334444444433333 2334445555666666666655544 2233333 5666666666655433
No 230
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.21 E-value=0.00072 Score=73.66 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=25.5
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
...+.+.++|++|+|||+||+++++.....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345688899999999999999999988544
No 231
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.20 E-value=0.0024 Score=75.80 Aligned_cols=49 Identities=29% Similarity=0.353 Sum_probs=36.1
Q ss_pred cccchhhHHHHHHhhcC----CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 34 LVGLSSRIEKLISLLCV----GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 34 ~vGr~~~~~~l~~~l~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
.+|.+...+.+.+.+.. ......++.++|++|+||||||+.++......
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 78888777766554321 11234588999999999999999999987543
No 232
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.19 E-value=0.0014 Score=71.57 Aligned_cols=146 Identities=10% Similarity=0.036 Sum_probs=86.1
Q ss_pred cchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHh---ccCceeEEEEeccccccCCCCHHHHHHHHHHH
Q 001326 36 GLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLIS---WEFEGRCFVSNVRVESENGHRLVYLRERVLSE 112 (1099)
Q Consensus 36 Gr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 112 (1099)
|-++.++.+...+..+. .....++|++|+||||+|+++.+... .......++. . +....++..+.+ +...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~---~~~~~~id~ir~-li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-P---EGENIGIDDIRT-IKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-C---SSSCBCHHHHHH-HHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-C---CcCCCCHHHHHH-HHHH
Confidence 44566777888776443 67888999999999999999987531 1122223332 1 101334444332 3333
Q ss_pred HhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCc-ccccccCCCCcceEe
Q 001326 113 IFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDK-WILDNFGVHSSNIYE 189 (1099)
Q Consensus 113 l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~ 189 (1099)
.... + ..+++-++|+|+++.. +..+.|...+....+.+.+|++|.+. .+..... .. +++
T Consensus 74 ~~~~-p--------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~-SR--~~~ 135 (305)
T 2gno_A 74 LNYS-P--------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIK-SR--VFR 135 (305)
T ss_dssp HTSC-C--------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHH-TT--SEE
T ss_pred Hhhc-c--------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHH-ce--eEe
Confidence 2211 0 1245668899999754 34455554443334567777766544 3333321 12 799
Q ss_pred cCCCCHHHHHHHHhhhh
Q 001326 190 VNGLEYDEARELFCNYA 206 (1099)
Q Consensus 190 l~~L~~~ea~~Lf~~~a 206 (1099)
++++++++..+.+...+
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998776
No 233
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.19 E-value=0.0046 Score=65.67 Aligned_cols=54 Identities=26% Similarity=0.246 Sum_probs=37.5
Q ss_pred CCCCCCccccchhhHHHHHHhhcC--C--------CCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCV--G--------FPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+....++++|.+...+++.++... . -.-.+-+.|+|++|+||||||++++....
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 344456789988777766655421 0 00012288999999999999999998765
No 234
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.17 E-value=0.0045 Score=66.79 Aligned_cols=54 Identities=26% Similarity=0.246 Sum_probs=38.2
Q ss_pred CCCCCCccccchhhHHHHHHhhcC--C--------CCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCV--G--------FPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+....++++|.+..++++.++... . -.-.+-|.|+|++|+||||||++++....
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 334456799999887777665431 0 00112288999999999999999998765
No 235
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.07 E-value=0.00037 Score=67.34 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=27.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
-..++|+|..|+||||||+.++......-...+|+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 357899999999999999999997754311245554
No 236
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.06 E-value=0.0086 Score=69.59 Aligned_cols=50 Identities=32% Similarity=0.216 Sum_probs=38.0
Q ss_pred CCccccchhhHHHHHHhhc---CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 31 FKGLVGLSSRIEKLISLLC---VGFPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+.++|.+..++.+..++. .+....+-+.++|++|+|||++|+++++.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 3679999998876655443 3322335678999999999999999998765
No 237
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.97 E-value=0.0007 Score=75.37 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=40.0
Q ss_pred CCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 30 DFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
..+.++|++..++.+...+..+ +-+.++|.+|+|||++|+++.+.....
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred hccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3467999999999888877643 357799999999999999999977544
No 238
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.95 E-value=0.0024 Score=79.52 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=81.7
Q ss_pred CccccchhhHHHHHHhhcCCC-------CCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHH
Q 001326 32 KGLVGLSSRIEKLISLLCVGF-------PDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVY 104 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 104 (1099)
..++|.+..++.+...+.... .....+.++|++|+|||++|+++++.....-...+.+ +..+.. ......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~~~-~~~~~~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSEYM-EKHSTS- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGGGC-SSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echhcc-cccccc-
Confidence 458999998888877775211 1234688999999999999999999764332223333 232222 111110
Q ss_pred HHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCC-----------CCCCCeEEEEe
Q 001326 105 LRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDR-----------FGPGSRIIITT 171 (1099)
Q Consensus 105 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~-----------~~~gsrIiiTT 171 (1099)
.......+++ ...-+|+||+++... ....|...+.. .....+||+||
T Consensus 568 -----------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -----------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp --------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -----------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 0001222221 233488999997542 22222221111 12356888888
Q ss_pred CCcc-----------------cccccCCCCcceEecCCCCHHHHHHHHhhhh
Q 001326 172 RDKW-----------------ILDNFGVHSSNIYEVNGLEYDEARELFCNYA 206 (1099)
Q Consensus 172 R~~~-----------------v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 206 (1099)
.... +... .+. ++.+.+++.++..+++...+
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~R--l~~--~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINR--IDE--IIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTT--SSE--EEECC--CHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhh--CCe--EEecCCCCHHHHHHHHHHHH
Confidence 7311 1111 223 78899999988888776544
No 239
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.95 E-value=0.015 Score=62.38 Aligned_cols=152 Identities=17% Similarity=0.087 Sum_probs=80.0
Q ss_pred CCccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCC
Q 001326 31 FKGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENG 99 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 99 (1099)
-+++.|.++..++|.+.+.. +-.-.+-++|+|++|.||||||++++...... .+++. ..... ..
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~-~~ 83 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELL-NM 83 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTC-SS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHH-hh
Confidence 45688888887777765420 10111228999999999999999999876432 23332 11111 00
Q ss_pred CCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh-------------HHHHHhcCCCC--CCCC
Q 001326 100 HRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG-------------QLKYLAGGIDR--FGPG 164 (1099)
Q Consensus 100 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~--~~~g 164 (1099)
......+ .+..+ ....-...+.++++|+++... ....+...+.. ....
T Consensus 84 -~~~~~~~-~i~~v---------------f~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 84 -YVGESER-AVRQV---------------FQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp -TTHHHHH-HHHHH---------------HHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred -hhhHHHH-HHHHH---------------HHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 1111111 11111 111112356789999986421 11112111111 1123
Q ss_pred CeEEEEeCCccccccc-----CCCCcceEecCCCCHHHHHHHHhhhh
Q 001326 165 SRIIITTRDKWILDNF-----GVHSSNIYEVNGLEYDEARELFCNYA 206 (1099)
Q Consensus 165 srIiiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 206 (1099)
.-++.+|....+.... ..+. .+.++..+.++-.+++..+.
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~--~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDK--TLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCE--EEECCSCCHHHHHHHHHHHT
T ss_pred EEEEeecCChhhCCHhhcCcccCCe--EEEeCCcCHHHHHHHHHHHH
Confidence 3455667666554322 2344 78899999999999998765
No 240
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.92 E-value=0.0018 Score=80.63 Aligned_cols=153 Identities=15% Similarity=0.184 Sum_probs=85.8
Q ss_pred CCCccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccC
Q 001326 30 DFKGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESEN 98 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 98 (1099)
..+.++|.+..++++.+++.. +-.....|.|+|.+|+||||||+++.......| +.+. .......
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~ 277 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSK 277 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhh
Confidence 346799999999998888752 223345788999999999999999998764432 2221 1111100
Q ss_pred CCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh----------------hHHHHHhcCCCCCC
Q 001326 99 GHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV----------------GQLKYLAGGIDRFG 162 (1099)
Q Consensus 99 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~~ 162 (1099)
..+ ...+. ....+.......+.++++|+++.. .++-.+...... .
T Consensus 278 ~~g--~~~~~----------------l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~ 338 (806)
T 1ypw_A 278 LAG--ESESN----------------LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-R 338 (806)
T ss_dssp STT--HHHHH----------------HHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-T
T ss_pred hhh--hHHHH----------------HHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-c
Confidence 011 00000 112222233345789999998421 112222222221 2
Q ss_pred CCCeEEEEeCCccccc-cc----CCCCcceEecCCCCHHHHHHHHhhhhc
Q 001326 163 PGSRIIITTRDKWILD-NF----GVHSSNIYEVNGLEYDEARELFCNYAF 207 (1099)
Q Consensus 163 ~gsrIiiTTR~~~v~~-~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 207 (1099)
.+..+|.||....... .. ..+. .+.+...+.++..+++..++-
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~--~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDR--EVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCE--EECCCCCCHHHHHHHHHHTTT
T ss_pred ccEEEecccCCchhcCHHHhccccccc--ccccCCCCHHHHHHHHHHHHh
Confidence 3445666665543221 11 1222 578888899998888877653
No 241
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.83 E-value=0.011 Score=68.58 Aligned_cols=173 Identities=17% Similarity=0.113 Sum_probs=92.7
Q ss_pred CCCCCccccchhhHHHHHHhhcC--C--------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEecccccc
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCV--G--------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESE 97 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 97 (1099)
....++++|.+..++++.+.... . ..-.+-|.|+|++|+||||||++++...... .+.+. ......
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~~ 102 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVE 102 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGTS
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHHH
Confidence 34457899999888877766431 1 0112238899999999999999999876422 22332 111110
Q ss_pred CCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhc----CCeEEEEEeCCCCh----------------hHHHHHhcC
Q 001326 98 NGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLR----RMKVLIVLDDVNKV----------------GQLKYLAGG 157 (1099)
Q Consensus 98 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~----~kr~LlVLDdv~~~----------------~~~~~l~~~ 157 (1099)
...+. ....+....+ ..+.++++|+++.. ..+..+...
T Consensus 103 ~~~g~----------------------~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~ 160 (499)
T 2dhr_A 103 MFVGV----------------------GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE 160 (499)
T ss_dssp SCTTH----------------------HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHH
T ss_pred hhhhh----------------------HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHH
Confidence 10110 1111222222 23579999999532 112333332
Q ss_pred CCCC--CCCCeEEEEeCCccccccc-----CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCC
Q 001326 158 IDRF--GPGSRIIITTRDKWILDNF-----GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGN 230 (1099)
Q Consensus 158 ~~~~--~~gsrIiiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 230 (1099)
+..+ ..+..|+.||.....+... ..+. .+.++..+.++-.+++..++-+.....+. ....++..+.|.
T Consensus 161 Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr--~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~ 235 (499)
T 2dhr_A 161 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDR--QIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGF 235 (499)
T ss_dssp GGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCC--EEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSC
T ss_pred hcccccCccEEEEEecCChhhcCcccccccccce--EEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCC
Confidence 2211 2234555566655443311 1233 78999999999999998776332221111 123355566665
Q ss_pred c
Q 001326 231 P 231 (1099)
Q Consensus 231 P 231 (1099)
.
T Consensus 236 ~ 236 (499)
T 2dhr_A 236 V 236 (499)
T ss_dssp C
T ss_pred C
Confidence 5
No 242
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.52 E-value=0.006 Score=66.72 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=38.4
Q ss_pred CCCccccch----hhHHHHHHhhcCCCC-CEEEEEEEcCCCCcHHHHHHHHHHHHh-ccCceeEEE
Q 001326 30 DFKGLVGLS----SRIEKLISLLCVGFP-DFRIVGIWGMAGIGKTTLAGAIFNLIS-WEFEGRCFV 89 (1099)
Q Consensus 30 ~~~~~vGr~----~~~~~l~~~l~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~ 89 (1099)
..+.|++.+ ..++.+.+++....+ ..+.+.|+|.+|+|||+||+++++... .+...+.|+
T Consensus 122 tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 122 HLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp CGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 335666543 233445555543221 246788999999999999999999776 543344555
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.15 E-value=0.0053 Score=76.55 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHhhcCC-------CCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 32 KGLVGLSSRIEKLISLLCVG-------FPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+.++|.+..++.+...+... ......+.++|++|+|||++|+++.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 35889998888877766421 11234788999999999999999999873
No 244
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.11 E-value=0.011 Score=61.08 Aligned_cols=33 Identities=24% Similarity=0.111 Sum_probs=25.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
-.+++|+|.+|+||||+|..+.. . .-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 35889999999999999999987 2 223566664
No 245
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.99 E-value=0.012 Score=64.53 Aligned_cols=71 Identities=23% Similarity=0.188 Sum_probs=45.3
Q ss_pred ccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHH
Q 001326 35 VGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEI 113 (1099)
Q Consensus 35 vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 113 (1099)
.|...-+..|-.++. +-..-.++.|.|.+|+||||+|..++..+..+-..++|+. -.-...++..+++...
T Consensus 27 ~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS-------lEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS-------LEMSAEQLALRALSDL 97 (338)
T ss_dssp CSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE-------SSSCHHHHHHHHHHHH
T ss_pred CcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-------CCCCHHHHHHHHHHHh
Confidence 333333344444443 2222358889999999999999999886654434566664 4455677777776654
No 246
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.74 E-value=0.06 Score=58.39 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=33.3
Q ss_pred hhhHHHHHHhhcCC------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 38 SSRIEKLISLLCVG------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 38 ~~~~~~l~~~l~~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
+.-.++|.+.+... .....+|+|+|.+|+||||++..++..+..+
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 33445666666532 1346899999999999999999999877544
No 247
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.70 E-value=0.013 Score=71.85 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=79.2
Q ss_pred CccccchhhHHHHHHhhcCC-----------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCC
Q 001326 32 KGLVGLSSRIEKLISLLCVG-----------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGH 100 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 100 (1099)
+.+.|.++..++|.+.+... ....+-|.++|++|.|||.+|++++++.... |+. + +
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~-v---~---- 543 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS-I---K---- 543 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEE-C---C----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-----eEE-e---c----
Confidence 46788888888888776521 1224567899999999999999999986533 222 1 1
Q ss_pred CHHHHHHHHHHHHhcccccccCCC-hhHHHHHHhcCCeEEEEEeCCCChh----------------HHHHHhcCCCCCCC
Q 001326 101 RLVYLRERVLSEIFEENIKIETPC-LPEYIGERLRRMKVLIVLDDVNKVG----------------QLKYLAGGIDRFGP 163 (1099)
Q Consensus 101 ~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~~ 163 (1099)
..++....... ... ....+...-+..+.+|+||+++..- ....|+..+.....
T Consensus 544 ---------~~~l~s~~vGe-se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 544 ---------GPELLTMWFGE-SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp ---------HHHHHTTTCSS-CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred ---------cchhhccccch-HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 11122111111 111 2222222224568999999986321 12333332222222
Q ss_pred --CCeEEEEeCCccccc-cc----CCCCcceEecCCCCHHHHHHHHhhhhcC
Q 001326 164 --GSRIIITTRDKWILD-NF----GVHSSNIYEVNGLEYDEARELFCNYAFK 208 (1099)
Q Consensus 164 --gsrIiiTTR~~~v~~-~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 208 (1099)
+.-||-||-....+. .. ..+. .+.++..+.++-.++|..+.-+
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~--~i~v~lPd~~~R~~il~~~l~~ 663 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQ--LIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCC--EEEC-----CHHHHTTTTTSSC
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceE--EEEECCcCHHHHHHHHHHHhcC
Confidence 222333443333222 11 2355 7889888888888888777643
No 248
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.63 E-value=0.0083 Score=64.74 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=21.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
-+++.|+|++|+||||||.++...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 356789999999999999999876
No 249
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.60 E-value=0.0047 Score=63.63 Aligned_cols=110 Identities=16% Similarity=-0.033 Sum_probs=57.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccc--cccCCC-hhHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENI--KIETPC-LPEYIGE 131 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~--~~~~~~-~~~~l~~ 131 (1099)
-.++.|+|..|+||||+|..+..+...+-..+.++..... .. +.. ++.+.+..... ...... +.+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d---~r-~~~----~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID---TR-SIR----NIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---GG-GCS----SCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC---ch-HHH----HHHHhcCCCccccccCCHHHHHHHHHH
Confidence 4688899999999999999998887655444444421110 00 110 11111111100 111111 2333333
Q ss_pred HhcCC-eEEEEEeCCCC--hhHHHHHhcCCCCCCCCCeEEEEeCCcc
Q 001326 132 RLRRM-KVLIVLDDVNK--VGQLKYLAGGIDRFGPGSRIIITTRDKW 175 (1099)
Q Consensus 132 ~L~~k-r~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~~~ 175 (1099)
.+.+. .-+||+|.+.. .++++.+.... ..|-.||+|.++..
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~---~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILA---ENGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHH---HTTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHH---hCCCeEEEEecccc
Confidence 33333 45999999864 34444443211 12678999998654
No 250
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.55 E-value=0.02 Score=57.12 Aligned_cols=115 Identities=17% Similarity=0.010 Sum_probs=59.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHh--ccc--ccc-------cCC
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIF--EEN--IKI-------ETP 123 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~--~~~--~~~-------~~~ 123 (1099)
...|-|++-.|.||||.|-.+.-+...+--.+.++.-.... ...+-..+.+.+--++. ... +.. ...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~--~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT--WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS--SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC--CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 34566777777999999999988766554445555422211 12233333333300000 000 000 000
Q ss_pred C-hhHHHHHHhcC-CeEEEEEeCCC--------ChhHHHHHhcCCCCCCCCCeEEEEeCCc
Q 001326 124 C-LPEYIGERLRR-MKVLIVLDDVN--------KVGQLKYLAGGIDRFGPGSRIIITTRDK 174 (1099)
Q Consensus 124 ~-~~~~l~~~L~~-kr~LlVLDdv~--------~~~~~~~l~~~~~~~~~gsrIiiTTR~~ 174 (1099)
. .....++.+.. +-=|||||++. +.+++-.+... ......||||+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCC
Confidence 1 23344455543 44599999983 22333333322 24567899999986
No 251
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.53 E-value=0.033 Score=61.01 Aligned_cols=92 Identities=16% Similarity=0.045 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEE
Q 001326 10 KPIRMGFQEYQRLKEKSVSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFV 89 (1099)
Q Consensus 10 ~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 89 (1099)
.-+.+++.++.+.+.... ....|...-+..|-.++ .+-..-.++.|.|.+|+||||+|..++..+..+-..++|+
T Consensus 28 ~~~~~~~~~~~~~~~~~~----~~~~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~ 102 (315)
T 3bh0_A 28 GSIDEALVTVYEEIESAD----GNITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 102 (315)
T ss_dssp CCCHHHHHHHHHHHHTCS----SSCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEE
T ss_pred ccHHHHHHHHHHHHHhcc----CCCCCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 356677777776665431 11223332233333444 2223335888999999999999999987654443567777
Q ss_pred EeccccccCCCCHHHHHHHHHHHH
Q 001326 90 SNVRVESENGHRLVYLRERVLSEI 113 (1099)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~ll~~l 113 (1099)
. -.....++..+++...
T Consensus 103 s-------lE~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 103 S-------LEMGKKENIKRLIVTA 119 (315)
T ss_dssp E-------SSSCHHHHHHHHHHHH
T ss_pred E-------CCCCHHHHHHHHHHHH
Confidence 5 3456667777776553
No 252
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.53 E-value=0.011 Score=74.45 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=38.0
Q ss_pred ccccchhhHHHHHHhhcCC------C-CCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 33 GLVGLSSRIEKLISLLCVG------F-PDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 33 ~~vGr~~~~~~l~~~l~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.++|.+..++.+...+... . .....+.|+|.+|+|||++|+++.+....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5799999888887776521 1 12357889999999999999999997643
No 253
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.52 E-value=0.015 Score=60.47 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=26.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
.+++|.|.+|+|||||++.+.......-..+.|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 58899999999999999999875543323445553
No 254
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.48 E-value=0.023 Score=62.27 Aligned_cols=78 Identities=17% Similarity=0.113 Sum_probs=46.6
Q ss_pred CccchHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHhhcCC------------CCCEEEEEEEcCCCCcHHHHHHH
Q 001326 7 PGIKPIRMGFQEYQRLKEKSVSSDFKGLVGLSSRIEKLISLLCVG------------FPDFRIVGIWGMAGIGKTTLAGA 74 (1099)
Q Consensus 7 ~~~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~~------------~~~~~vv~I~G~gGiGKTtLA~~ 74 (1099)
-..+.++++++.+.++......... =++.-.++|.+.+... ....++|+|+|.+|+||||++..
T Consensus 49 v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 49 MGMKMVLKVSNLVRKKTKRDTSFEN----IKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCCHHH----HHHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhchhHHH----HHHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHH
Confidence 3445677777777665533211111 1122234555555422 13468999999999999999999
Q ss_pred HHHHHhccCceeEEE
Q 001326 75 IFNLISWEFEGRCFV 89 (1099)
Q Consensus 75 v~~~~~~~f~~~~~~ 89 (1099)
++..+..+ ...+.+
T Consensus 125 LA~~l~~~-g~kVll 138 (320)
T 1zu4_A 125 MANYYAEL-GYKVLI 138 (320)
T ss_dssp HHHHHHHT-TCCEEE
T ss_pred HHHHHHHC-CCeEEE
Confidence 98876544 333444
No 255
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.22 E-value=0.019 Score=58.86 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=30.6
Q ss_pred hHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 40 RIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 40 ~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
-+++|.+.+....+...+|+|.|..|.|||||++.+...+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34455555543234568999999999999999999988765
No 256
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.20 E-value=0.04 Score=60.48 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=44.9
Q ss_pred ccchHHHHHHHHHHhhcccC---CCCCCccccchhhHHHHHHhhcCCC-----------CCEEEEEEEcCCCCcHHHHHH
Q 001326 8 GIKPIRMGFQEYQRLKEKSV---SSDFKGLVGLSSRIEKLISLLCVGF-----------PDFRIVGIWGMAGIGKTTLAG 73 (1099)
Q Consensus 8 ~~~~i~~i~~~v~~~l~~~~---~~~~~~~vGr~~~~~~l~~~l~~~~-----------~~~~vv~I~G~gGiGKTtLA~ 73 (1099)
..+.+++|++.+.++..... ...+.. .-++.-.++|.+.+.... ....+++|+|+.|+||||+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~ 147 (328)
T 3e70_C 69 ALEVVDALREKIKQKLVGKKVRIGTDKGK-IIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIA 147 (328)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEECC---CH-HHHHHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcccCCccCHHH-HHHHHHHHHHHHHhCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHH
Confidence 34567777777777664321 111111 112223455666654321 346899999999999999999
Q ss_pred HHHHHHhcc
Q 001326 74 AIFNLISWE 82 (1099)
Q Consensus 74 ~v~~~~~~~ 82 (1099)
.+...++..
T Consensus 148 ~Lag~l~~~ 156 (328)
T 3e70_C 148 KLANWLKNH 156 (328)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 998866543
No 257
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.11 E-value=0.037 Score=61.51 Aligned_cols=109 Identities=13% Similarity=0.144 Sum_probs=66.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCcee-EEEEeccccccCCCCHHHHHHHHHHHHhccc-ccccCCChhHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGR-CFVSNVRVESENGHRLVYLRERVLSEIFEEN-IKIETPCLPEYIGERL 133 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~-~~~~~~~~~~~l~~~L 133 (1099)
.+++|+|+.|.||||+.+.+...+....... +.+.+..+.. ..... ...... ...........+...|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~-~~~~~---------~~v~q~~~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV-HESKK---------CLVNQREVHRDTLGFSEALRSAL 193 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC-CCCSS---------SEEEEEEBTTTBSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh-hhccc---------cceeeeeeccccCCHHHHHHHHh
Confidence 4999999999999999999988765432223 3332211110 00000 000000 0011122566888999
Q ss_pred cCCeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCCcccc
Q 001326 134 RRMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRDKWIL 177 (1099)
Q Consensus 134 ~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~ 177 (1099)
...+=+|++|++.+.+.++.+.... ..|..|++||.+...+
T Consensus 194 ~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 9999999999999877766544331 3466788888876554
No 258
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.06 E-value=0.013 Score=58.81 Aligned_cols=16 Identities=19% Similarity=0.027 Sum_probs=8.8
Q ss_pred cCCCCCCCEEEccCCC
Q 001326 751 ICCLSSLESLNLAENN 766 (1099)
Q Consensus 751 ~~~l~sL~~L~L~~n~ 766 (1099)
+..-++|+.|+++.|.
T Consensus 153 L~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 153 IEENESLLRVGISFAS 168 (197)
T ss_dssp HHHCSSCCEEECCCCC
T ss_pred HHhCCCcCeEeccCCC
Confidence 4444566666665553
No 259
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.05 E-value=0.016 Score=65.16 Aligned_cols=48 Identities=21% Similarity=0.148 Sum_probs=37.7
Q ss_pred ccccchhhHHHHHHhhc-------------CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 33 GLVGLSSRIEKLISLLC-------------VGFPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 33 ~~vGr~~~~~~l~~~l~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.++|.+..++.+...+. ......+.|.++|++|+|||++|+++++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 37999999988888772 1112345688999999999999999999874
No 260
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.03 E-value=0.021 Score=60.57 Aligned_cols=110 Identities=13% Similarity=0.134 Sum_probs=62.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcc-cccccCCChhHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEE-NIKIETPCLPEYIGERL 133 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~~~~~~~~~~~~l~~~L 133 (1099)
-.+++|+|+.|.||||+++.+...+...+...+++....... ....... +... ............+.+.|
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~-~~~~~~~--------~v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY-VFKHKKS--------IVNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCS-CCCCSSS--------EEEEEEBTTTBSCHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCccee-ecCCcce--------eeeHHHhCCCHHHHHHHHHHHH
Confidence 468999999999999999999886654434455443211000 0000000 0000 00001112455666677
Q ss_pred cCCeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCCccc
Q 001326 134 RRMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRDKWI 176 (1099)
Q Consensus 134 ~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v 176 (1099)
..++=+|++|+..+.+....+... ...|.-|++||.+...
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSH
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcchH
Confidence 667778999999766655444332 1346778888877654
No 261
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.96 E-value=0.043 Score=59.54 Aligned_cols=79 Identities=16% Similarity=0.107 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHhhcCCC---------CCEEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 8 GIKPIRMGFQEYQRLKEKSVSSDFKGLVGLSSRIEKLISLLCVGF---------PDFRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 8 ~~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~~~---------~~~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
..+.++++++.+.++.........+.+ +....++|.+.+.... ....+++|+|..|+||||+++.++..
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 46 GPKITVRIVERLREDIMSGKLKSGSEI--KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCSHHHH--HHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCHHHH--HHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 345677777777665533211111111 1223344555554221 23579999999999999999999886
Q ss_pred HhccCceeEEE
Q 001326 79 ISWEFEGRCFV 89 (1099)
Q Consensus 79 ~~~~f~~~~~~ 89 (1099)
++.. ...+++
T Consensus 124 l~~~-~g~V~l 133 (302)
T 3b9q_A 124 LKNE-GTKVLM 133 (302)
T ss_dssp HHHT-TCCEEE
T ss_pred HHHc-CCeEEE
Confidence 6543 334444
No 262
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.95 E-value=0.011 Score=58.67 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+|.|.|++|+||||+|+++.+++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4788999999999999999998764
No 263
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.93 E-value=0.0038 Score=62.62 Aligned_cols=109 Identities=15% Similarity=0.056 Sum_probs=51.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcC
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRR 135 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 135 (1099)
+++.|+|..|+||||+|..+..+...+-..+.++..... ...+...+...+ .+......... ...+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d---~r~~~~~i~s~~--g~~~~~~~~~~---~~~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKID---SRYHSTMIVSHS--GNGVEAHVIER---PEEMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC--------CCCEECC------CEECEEESS---GGGGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccc---cccCcccEEecC--CCceeeEEECC---HHHHHHHhcC
Confidence 477899999999999997777655333222333321100 011100000000 00000001111 1122233344
Q ss_pred CeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCcc
Q 001326 136 MKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDKW 175 (1099)
Q Consensus 136 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~ 175 (1099)
+.-+|++|.+... ++++.+....+ .|..|++|.++..
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~---~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLD---RGIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEEESBC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHH---CCCCEEEEeeccc
Confidence 5679999998654 34444332221 2778999888543
No 264
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.87 E-value=0.046 Score=59.12 Aligned_cols=83 Identities=14% Similarity=0.008 Sum_probs=47.6
Q ss_pred CccchHHHHHHHHHHhhcccC--CCCCCccccchhhHHHHHHhhcCCCCC-------EEEEEEEcCCCCcHHHHHHHHHH
Q 001326 7 PGIKPIRMGFQEYQRLKEKSV--SSDFKGLVGLSSRIEKLISLLCVGFPD-------FRIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 7 ~~~~~i~~i~~~v~~~l~~~~--~~~~~~~vGr~~~~~~l~~~l~~~~~~-------~~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
-..+.++++++.+.++..... +...+.-.=+....+++...+.....+ .++++++|.+|+||||++..++.
T Consensus 41 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 41 VNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344567777777766543221 111110000223345566666432222 67999999999999999999988
Q ss_pred HHhccCceeEEE
Q 001326 78 LISWEFEGRCFV 89 (1099)
Q Consensus 78 ~~~~~f~~~~~~ 89 (1099)
.+..+-..+.++
T Consensus 121 ~~~~~g~~v~l~ 132 (297)
T 1j8m_F 121 FYKKKGFKVGLV 132 (297)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHHCCCeEEEE
Confidence 765443333443
No 265
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.85 E-value=0.093 Score=59.57 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=25.3
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
...+|.++|.+|+||||++.+++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999998876554
No 266
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.84 E-value=0.02 Score=62.68 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=34.7
Q ss_pred ccchhhHHHHHHhhc--CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 35 VGLSSRIEKLISLLC--VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 35 vGr~~~~~~l~~~l~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
|+.+.-.+++.+.+. ...+....|+|+|++|+||||+|+.++..+...|
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 444555555555553 2334566789999999999999999998765544
No 267
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.83 E-value=0.034 Score=56.49 Aligned_cols=44 Identities=30% Similarity=0.370 Sum_probs=33.1
Q ss_pred chhhHHHHHHhhcC-CCCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 37 LSSRIEKLISLLCV-GFPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 37 r~~~~~~l~~~l~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
|++.++++.+.+.. ......+|+|.|..|.||||+|+.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44566666666543 234567999999999999999999988664
No 268
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.78 E-value=0.026 Score=56.63 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=27.6
Q ss_pred cCCCCCcEEEeCCc-ccccc----cccccccCccccEEeccCCCCCC----ccchhhcCCCCCCEEEccCCCCc
Q 001326 589 ESLPNLKILNLGFC-KRLKR----VSTGICKLKYLRCLYLLDCSDLE----SFPEILEKMEPLEKLALDRSGIK 653 (1099)
Q Consensus 589 ~~l~~L~~L~L~~~-~~~~~----l~~~l~~l~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~L~~~~l~ 653 (1099)
.+-+.|+.|+|+++ .+... +...+..-+.|+.|+|++|.... .+.+.+..-+.|+.|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455666666654 32211 22223333445555554444332 22233333444444444444443
No 269
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.76 E-value=0.038 Score=51.62 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=33.8
Q ss_pred EEeccCCCCc--ccccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCC
Q 001326 736 TLTLSGCGII--EISQDICCLSSLESLNLAENNFESLPSS-ISQLSCLRRLCLRNCN 789 (1099)
Q Consensus 736 ~L~Ls~~~l~--~l~~~~~~l~sL~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~ 789 (1099)
.++.+++.++ .+|..+ .++|+.|+|++|+|+.+|.. +..+++|+.|+|++|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5566666666 566543 34677777777777777644 4567777777777764
No 270
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.73 E-value=0.085 Score=58.34 Aligned_cols=50 Identities=28% Similarity=0.199 Sum_probs=36.1
Q ss_pred HHHHHHhhc-CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 41 IEKLISLLC-VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 41 ~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
...|-..|. .+-+.-+++.|+|.+|+||||||..+.......-..++|+.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 455666665 33334479999999999999999999987654434466775
No 271
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.68 E-value=0.018 Score=56.74 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998764
No 272
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.63 E-value=0.057 Score=59.84 Aligned_cols=79 Identities=16% Similarity=0.107 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHhhcCCC---------CCEEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 8 GIKPIRMGFQEYQRLKEKSVSSDFKGLVGLSSRIEKLISLLCVGF---------PDFRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 8 ~~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~~~---------~~~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
..+.++++++.+.++.........+.+ +..-.++|.+.+.... ....+++|+|..|+||||+++.++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 103 GPKITVRIVERLREDIMSGKLKSGSEI--KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCSHHHH--HHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCHHHH--HHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 345667777777665533221111111 1223344555554321 23579999999999999999999887
Q ss_pred HhccCceeEEE
Q 001326 79 ISWEFEGRCFV 89 (1099)
Q Consensus 79 ~~~~f~~~~~~ 89 (1099)
++.. ...+.+
T Consensus 181 l~~~-~G~V~l 190 (359)
T 2og2_A 181 LKNE-GTKVLM 190 (359)
T ss_dssp HHHT-TCCEEE
T ss_pred cccc-CCEEEE
Confidence 6543 334444
No 273
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.58 E-value=0.044 Score=59.48 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=27.6
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
...+|+|+|.+|+||||+++.++...+.. ...+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 35699999999999999999998866543 3344443
No 274
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.58 E-value=0.1 Score=59.56 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHHhhcccCC----CCCCccccchhhHHHHHHhhcCC-------CCCEEEEEEEcCCCCcHHHHHHHHH
Q 001326 8 GIKPIRMGFQEYQRLKEKSVS----SDFKGLVGLSSRIEKLISLLCVG-------FPDFRIVGIWGMAGIGKTTLAGAIF 76 (1099)
Q Consensus 8 ~~~~i~~i~~~v~~~l~~~~~----~~~~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~ 76 (1099)
..+.++++++.+.++...... .....++ ..-.+++.+++... ....++|.++|.+|+||||+|..++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 44 ALPVVREFINRVKEKAVGHEVNKSLTPGQEFV--KIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp CHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTH--HHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccccccCChHHHHH--HHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 345677777777665533211 1111121 23345666666532 1346899999999999999999999
Q ss_pred HHHhcc
Q 001326 77 NLISWE 82 (1099)
Q Consensus 77 ~~~~~~ 82 (1099)
..+..+
T Consensus 122 ~~l~~~ 127 (433)
T 2xxa_A 122 KFLREK 127 (433)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 877655
No 275
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.57 E-value=0.037 Score=59.65 Aligned_cols=31 Identities=23% Similarity=0.125 Sum_probs=26.1
Q ss_pred CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 51 GFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 51 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
......+|+|.|..|+||||||+.+...+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3456789999999999999999999886643
No 276
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.54 E-value=0.019 Score=58.36 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.++|+|+|+.|+||||+|+.+...+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35889999999999999999998774
No 277
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.50 E-value=0.019 Score=57.41 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+.|.|+|++|+||||+|+.+.+++.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999998763
No 278
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.43 E-value=0.033 Score=64.80 Aligned_cols=58 Identities=22% Similarity=0.188 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 12 IRMGFQEYQRLKEKSVSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 12 i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+.+.++.+.+.+. +.+||.+..++.+...+..+ .-|.|+|++|+|||+||+++++...
T Consensus 9 ~~~~~~~l~~~l~-------~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 9 LAERISRLSSSLE-------KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHHHHHHHHHHHH-------TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4444555554443 46999999998888777543 3677999999999999999998763
No 279
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.42 E-value=0.058 Score=58.32 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.9
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
..++++|+|.+|+||||++..+...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999998765
No 280
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.35 E-value=0.02 Score=56.47 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
.+|+|.|++|+||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37899999999999999999 54
No 281
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.14 E-value=0.026 Score=55.37 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.++|+|.|+.|+||||+|+.+..++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 282
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.11 E-value=0.031 Score=63.16 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=36.7
Q ss_pred ccccchhhHHHHHHhhc----------------------------CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 33 GLVGLSSRIEKLISLLC----------------------------VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 33 ~~vGr~~~~~~l~~~l~----------------------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.++|.+..++.+...+. ........+.++|++|+|||++|+++++....
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58899888888876661 00112346789999999999999999997743
No 283
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.08 E-value=0.043 Score=55.07 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=23.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.+|.|.|++|+||||+|+.+.+++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998754
No 284
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.02 E-value=0.047 Score=55.37 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=24.2
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.-.+|+|+|+.|.||||+|+.+...+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999998775
No 285
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.02 E-value=0.11 Score=59.27 Aligned_cols=28 Identities=36% Similarity=0.605 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccCc
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISWEFE 84 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 84 (1099)
.++|+|.+|+||||||..+......++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~ 180 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHG 180 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccC
Confidence 5789999999999999999887655443
No 286
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.00 E-value=0.1 Score=57.44 Aligned_cols=26 Identities=27% Similarity=0.156 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
+.++|+|.+|+|||||++.+.+.+..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhh
Confidence 47889999999999999999886643
No 287
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.97 E-value=0.072 Score=61.07 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=47.6
Q ss_pred ccchHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHhhcCC-------CCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 8 GIKPIRMGFQEYQRLKEKSVSSDFKGLVGLSSRIEKLISLLCVG-------FPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 8 ~~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
..+.+++|++.+.++...........+. ..-.+.|.+.|... -..-.+++|+|..|+||||+++.+...++
T Consensus 241 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 241 GVETTRKIITNLTEGASRKQLRDAEALY--GLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCBGGGHH--HHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCHHHHH--HHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 3456777777776655432222222221 22233455555321 12357999999999999999999998765
Q ss_pred ccCceeEEEE
Q 001326 81 WEFEGRCFVS 90 (1099)
Q Consensus 81 ~~f~~~~~~~ 90 (1099)
.. .+.+++.
T Consensus 319 ~~-~G~V~l~ 327 (503)
T 2yhs_A 319 QQ-GKSVMLA 327 (503)
T ss_dssp HT-TCCEEEE
T ss_pred hc-CCeEEEe
Confidence 43 3455553
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.91 E-value=0.033 Score=55.27 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
.+|.|.|++|+||||+|+++.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999988
No 289
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.87 E-value=0.1 Score=59.27 Aligned_cols=73 Identities=21% Similarity=0.071 Sum_probs=43.1
Q ss_pred ccchHHHHHHHHHHhhcccCCCCCCccccc----hhhHHHHHHhhcCCC-------CCEEEEEEEcCCCCcHHHHHHHHH
Q 001326 8 GIKPIRMGFQEYQRLKEKSVSSDFKGLVGL----SSRIEKLISLLCVGF-------PDFRIVGIWGMAGIGKTTLAGAIF 76 (1099)
Q Consensus 8 ~~~~i~~i~~~v~~~l~~~~~~~~~~~vGr----~~~~~~l~~~l~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~ 76 (1099)
..+.++++++.+.++...... ...+-.. ..-.++|.++|..+. ...++|+++|.+|+||||++..++
T Consensus 41 ~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~v~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 41 NVKLVFSLTAKIKERLNKEKP--PSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHSCC--CTTCCHHHHHHHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcccc--cccCChHHHHHHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 344566666666665533211 1111111 122344555554321 236899999999999999999998
Q ss_pred HHHhcc
Q 001326 77 NLISWE 82 (1099)
Q Consensus 77 ~~~~~~ 82 (1099)
..++.+
T Consensus 119 ~~l~~~ 124 (433)
T 3kl4_A 119 YFYKKR 124 (433)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 866554
No 290
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.86 E-value=0.022 Score=56.83 Aligned_cols=29 Identities=34% Similarity=0.422 Sum_probs=24.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFE 84 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 84 (1099)
|.|.|+|++|+|||||++++..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 45789999999999999999887655543
No 291
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.76 E-value=0.057 Score=53.98 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=24.4
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
...+|.|.|++|+||||+|+.+...+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3478899999999999999999997754
No 292
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.73 E-value=0.056 Score=54.95 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+|.|.|++|+||||.|+.+.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999875
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.73 E-value=0.04 Score=55.39 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=22.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
..+|.|.|++|+||||+|+.+..++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4688999999999999999999876
No 294
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.72 E-value=0.027 Score=62.85 Aligned_cols=52 Identities=23% Similarity=0.197 Sum_probs=36.6
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
++...+.++|.+..++.+........ ..-|.|+|.+|+|||++|+++++...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34455679999886655443332211 12378999999999999999998654
No 295
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.72 E-value=0.028 Score=55.39 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+|+|+|+.|+||||+|+.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998754
No 296
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.71 E-value=0.027 Score=56.08 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+.|.|+|++|+||||+|+.+.+++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999876
No 297
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.71 E-value=0.14 Score=57.02 Aligned_cols=53 Identities=34% Similarity=0.245 Sum_probs=36.0
Q ss_pred hhhHHHHHHhhc-CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 38 SSRIEKLISLLC-VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 38 ~~~~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
..-+..|-.+|. .+-..-+++.|+|.+|+||||||..+.......-..++|+.
T Consensus 56 ~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 56 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 333455555664 22223357889999999999999999876654444577775
No 298
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.65 E-value=0.1 Score=59.87 Aligned_cols=51 Identities=18% Similarity=-0.058 Sum_probs=35.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSE 112 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 112 (1099)
-.++.|.|.+|+||||+|..++..+..+-..++|+. -.-+..++..+++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS-------lEms~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS-------LEMGKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC-------SSSCTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE-------CCCCHHHHHHHHHHH
Confidence 358889999999999999999887654434566664 334445666666554
No 299
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.61 E-value=0.05 Score=53.13 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=24.9
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
..++++|.|..|+|||||+.++...++.+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35689999999999999999999887654
No 300
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.61 E-value=0.036 Score=55.67 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=21.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
-.+++|+|+.|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999875
No 301
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.60 E-value=0.15 Score=54.84 Aligned_cols=34 Identities=9% Similarity=-0.049 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc--CceeEEEE
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISWE--FEGRCFVS 90 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~ 90 (1099)
++-|+|.+|+||||||.++......+ -..++|++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 68999999999999999998766544 24567775
No 302
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.56 E-value=0.042 Score=58.07 Aligned_cols=25 Identities=28% Similarity=0.208 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
++|.|.|++|+||||||++++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 303
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.53 E-value=0.038 Score=56.05 Aligned_cols=25 Identities=28% Similarity=0.619 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5889999999999999999997753
No 304
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.50 E-value=0.038 Score=54.61 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.|.|.|++|+||||+|+.+..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 305
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.43 E-value=0.044 Score=54.89 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=23.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.+|.|.|++|+||||+|+.+.+++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999997753
No 306
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.41 E-value=0.05 Score=53.72 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
-.+|+|+|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998865
No 307
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.39 E-value=0.039 Score=56.04 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+|+|.|+.|+||||+|+.+...+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 308
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.38 E-value=0.054 Score=56.83 Aligned_cols=27 Identities=19% Similarity=-0.016 Sum_probs=23.6
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.....|+|.|++|+||||+|+.+.+++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345788999999999999999998865
No 309
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.38 E-value=0.25 Score=54.70 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=32.4
Q ss_pred HHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc------cCceeEEEE
Q 001326 44 LISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW------EFEGRCFVS 90 (1099)
Q Consensus 44 l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~ 90 (1099)
|-.+|..+-+.-.++.|+|.+|+||||+|..++..... .-..++|+.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 34444333344579999999999999999999876422 224567775
No 310
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.37 E-value=0.15 Score=59.04 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=29.5
Q ss_pred HHHHHhhcCC-------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 42 EKLISLLCVG-------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 42 ~~l~~~l~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
++|.+++... ....++|+|+|.+|+||||++.++...+..+
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4555666532 1347899999999999999999998866544
No 311
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.36 E-value=0.056 Score=60.60 Aligned_cols=109 Identities=13% Similarity=0.164 Sum_probs=62.2
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeE-EEEeccccccCCCCHHHHHHHHHHHHhcc-cccccCCChhHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRC-FVSNVRVESENGHRLVYLRERVLSEIFEE-NIKIETPCLPEYIGE 131 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~~~~~~~~~~~~l~~ 131 (1099)
.-.+++|+|..|.||||+++.+...+.......+ ++....+.. ..... .+... ............+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~-~~~~~---------~~v~Q~~~g~~~~~~~~~l~~ 204 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV-FKHKK---------SIVNQREVGEDTKSFADALRA 204 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSC-CCCSS---------SEEEEEEBTTTBSCSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhh-hccCc---------eEEEeeecCCCHHHHHHHHHH
Confidence 3468999999999999999999887654323444 332110000 00000 00000 000011124667778
Q ss_pred HhcCCeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCCcc
Q 001326 132 RLRRMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRDKW 175 (1099)
Q Consensus 132 ~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~ 175 (1099)
.++..+=+|++|++.+.+.+....... ..|..|+.|+-+..
T Consensus 205 ~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 205 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred HhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 888788899999998777655433321 34666777776554
No 312
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.33 E-value=0.04 Score=54.85 Aligned_cols=25 Identities=12% Similarity=0.403 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999988654
No 313
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.30 E-value=0.12 Score=48.22 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=36.4
Q ss_pred EEEeecCCCC--cCCCCCCCCCceEEECCCCCcccccccc-cccCCccEEeccCCC
Q 001326 437 YLHWHECPLK--SLPSNFDLENLIELDLPYSKVEQLWEGE-KEAFKLKSIDLHQSH 489 (1099)
Q Consensus 437 ~L~l~~~~l~--~lp~~~~l~~L~~L~L~~n~i~~l~~~~-~~l~~L~~L~Ls~~~ 489 (1099)
.++.+++.++ .+|..+ +.+|++|+|++|+|+.++.+. ..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5667777777 777553 356778888888888777654 566777777777765
No 314
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.25 E-value=0.22 Score=57.42 Aligned_cols=53 Identities=19% Similarity=0.009 Sum_probs=37.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhcc-CceeEEEEeccccccCCCCHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWE-FEGRCFVSNVRVESENGHRLVYLRERVLSEIF 114 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 114 (1099)
-.++.|.|.+|+||||+|..++..+... -..++|+. -..+..++..+++....
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s-------lE~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS-------LEMPAAQLTLRMMCSEA 253 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE-------SSSCHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE-------CCCCHHHHHHHHHHHHc
Confidence 3588899999999999999998866532 33566664 34556677777665543
No 315
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.24 E-value=0.04 Score=54.96 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+|+|.|++|+||||+|+.+..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 316
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.23 E-value=0.067 Score=60.82 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHHhhcC------------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 32 KGLVGLSSRIEKLISLLCV------------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
++++|.+...+.+...+.. .....+-|.++|++|+||||+|++++..+...|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 4689988888777665521 011245688999999999999999999875443
No 317
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.21 E-value=0.057 Score=54.11 Aligned_cols=42 Identities=21% Similarity=0.204 Sum_probs=30.9
Q ss_pred hhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 39 SRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 39 ~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.-+..+..++.. -+..+.+.|+|++|+||||+|.++++.+..
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345556666642 233446889999999999999999998754
No 318
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.20 E-value=0.054 Score=53.03 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 319
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.18 E-value=0.2 Score=57.98 Aligned_cols=50 Identities=20% Similarity=0.139 Sum_probs=35.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcc-CceeEEEEeccccccCCCCHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWE-FEGRCFVSNVRVESENGHRLVYLRERVLSE 112 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 112 (1099)
.++.|.|.+|+||||+|..++..+... -..++|+. ......++...++..
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s-------~E~s~~~l~~r~~~~ 254 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS-------LEMSAQQLVMRMLCA 254 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE-------SSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-------CCCCHHHHHHHHHHH
Confidence 588899999999999999998876542 23466664 334456666666543
No 320
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.12 E-value=0.11 Score=57.01 Aligned_cols=101 Identities=17% Similarity=0.136 Sum_probs=60.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhccccc-c--cCCChhHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIK-I--ETPCLPEYIGER 132 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~--~~~~~~~~l~~~ 132 (1099)
.+++|+|..|.|||||++.+...+... ...+.+....+.. .. .. ..... . ........+...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~-~~-~~------------~~~i~~~~ggg~~~r~~la~a 236 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIV-FK-HH------------KNYTQLFFGGNITSADCLKSC 236 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCC-CS-SC------------SSEEEEECBTTBCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccc-cc-cc------------hhEEEEEeCCChhHHHHHHHH
Confidence 488999999999999999998866432 4556665432211 00 00 00000 0 112256677788
Q ss_pred hcCCeEEEEEeCCCChhHHHHHhcCCCCCCCCC-eEEEEeCCcc
Q 001326 133 LRRMKVLIVLDDVNKVGQLKYLAGGIDRFGPGS-RIIITTRDKW 175 (1099)
Q Consensus 133 L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs-rIiiTTR~~~ 175 (1099)
|..++=+|++|++...+.++.+... ..|. -+|+||....
T Consensus 237 L~~~p~ilildE~~~~e~~~~l~~~----~~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 237 LRMRPDRIILGELRSSEAYDFYNVL----CSGHKGTLTTLHAGS 276 (330)
T ss_dssp TTSCCSEEEECCCCSTHHHHHHHHH----HTTCCCEEEEEECSS
T ss_pred hhhCCCEEEEcCCChHHHHHHHHHH----hcCCCEEEEEEcccH
Confidence 8888889999999876555544322 1232 3666665443
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.10 E-value=0.058 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+|+|.|++|+||||+|+.+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 679999999999999999998865
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.08 E-value=0.083 Score=53.87 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=24.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
.+|+|.|++|+||||+|+.+.+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5789999999999999999999876543
No 323
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.08 E-value=0.054 Score=54.90 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=23.2
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
...+|+|.|+.|.||||+|+.+...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999999876
No 324
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.06 E-value=0.057 Score=53.89 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
..|+|.|++|+||||+|+.+.++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999875
No 325
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.06 E-value=0.04 Score=54.22 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
++|+|.|+.|+||||+|+.+.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 326
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.04 E-value=0.062 Score=54.56 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.8
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
....+|+|.|+.|+||||+|+.+.++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999999864
No 327
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.98 E-value=0.056 Score=53.96 Aligned_cols=24 Identities=33% Similarity=0.241 Sum_probs=21.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
...|+|+|+.|+||||+|+.+.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999986
No 328
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.94 E-value=0.041 Score=55.11 Aligned_cols=29 Identities=34% Similarity=0.422 Sum_probs=24.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFE 84 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 84 (1099)
++++|.|+.|+|||||++.+.......|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 47899999999999999999987654443
No 329
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.91 E-value=0.046 Score=55.84 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
-++|+|+|+.|+|||||++.+......
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 468999999999999999999987643
No 330
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.90 E-value=0.11 Score=57.50 Aligned_cols=51 Identities=25% Similarity=0.189 Sum_probs=35.6
Q ss_pred hHHHHHHhhc-CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 40 RIEKLISLLC-VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 40 ~~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
-...|-.+|. .+-..-+++.|+|.+|+||||||..+.......-..++|+.
T Consensus 45 G~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 45 GSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3445555664 23233468999999999999999999876654444567775
No 331
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.89 E-value=0.06 Score=53.94 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
.+++|.|+.|.||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 332
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.87 E-value=0.053 Score=54.59 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=23.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
..+|+|.|++|+||||+|+.+.++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998763
No 333
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.80 E-value=0.061 Score=54.49 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=23.4
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
+...+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999885
No 334
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.79 E-value=0.061 Score=56.80 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=24.1
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
....+|+|.|+.|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567899999999999999999988654
No 335
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.78 E-value=0.096 Score=57.05 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=33.4
Q ss_pred cccchhhHHHHHHhhcCC--CCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 34 LVGLSSRIEKLISLLCVG--FPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 34 ~vGr~~~~~~l~~~l~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+|-...+..+...+... .....+|||.|..|+||||+|+.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345455555544444322 34577999999999999999999988665
No 336
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.78 E-value=0.065 Score=54.33 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=23.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
..+|+|.|++|+||||+|+.+.+++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998763
No 337
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.75 E-value=0.058 Score=54.46 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+|+|.|++|+||||+|+.+.+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998764
No 338
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.74 E-value=0.041 Score=54.76 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+|.|.|+.|+||||+|+.+.+++.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999988654
No 339
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.73 E-value=0.067 Score=53.64 Aligned_cols=26 Identities=27% Similarity=0.265 Sum_probs=23.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
..+|+|.|+.|+||||+|+.+.+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998753
No 340
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.70 E-value=0.16 Score=56.68 Aligned_cols=41 Identities=27% Similarity=0.269 Sum_probs=30.4
Q ss_pred HHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 42 EKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 42 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
.++...+........+|+|+|.+|+|||||+.++...+...
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34444444334567899999999999999999998766443
No 341
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.67 E-value=0.048 Score=55.47 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=23.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.++|+|+|++|+||||+++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46889999999999999999988763
No 342
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.62 E-value=0.086 Score=53.93 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=24.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
..+|+|.|+.|+||||+|+.+.+++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999987544
No 343
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.58 E-value=0.068 Score=55.30 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+|+|+|+.|+||||+|+.+...+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 344
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.53 E-value=0.081 Score=54.14 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=24.6
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
...++|.|.|++|+||||.|+.+.+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567999999999999999999999875
No 345
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.51 E-value=0.073 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999774
No 346
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.50 E-value=0.15 Score=56.00 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=27.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhcc------CceeEEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWE------FEGRCFVS 90 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~ 90 (1099)
-.++.|+|.+|+||||+|..+....... -..++|+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3588999999999999999998765322 23567775
No 347
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.50 E-value=0.086 Score=52.93 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.4
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
...+|+|+|+.|.||||+|+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998864
No 348
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.46 E-value=0.064 Score=54.48 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
+|+|+|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 349
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.45 E-value=0.23 Score=50.24 Aligned_cols=110 Identities=15% Similarity=-0.015 Sum_probs=54.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhc
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLR 134 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 134 (1099)
-++..++|..|.||||.|.....+...+-..++.+.... . ..++... +.+.+............ ..+.+.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~--d-~R~ge~~----i~s~~g~~~~a~~~~~~-~~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI--D-NRYSEED----VVSHNGLKVKAVPVSAS-KDIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEECSSG-GGGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc--C-CcchHHH----HHhhcCCeeEEeecCCH-HHHHHHHh
Confidence 468889999999999999998887655444344432111 1 1222222 22322111111100001 12222333
Q ss_pred CCeEEEEEeCCCC--hhHHHHHhcCCCCCCCCCeEEEEeCCcc
Q 001326 135 RMKVLIVLDDVNK--VGQLKYLAGGIDRFGPGSRIIITTRDKW 175 (1099)
Q Consensus 135 ~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~~~ 175 (1099)
++--+|++|.+.- .++++.+.... ..|-.||+|.++..
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEecccc
Confidence 3334999999853 34554443211 23679999999654
No 350
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.39 E-value=0.2 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.274 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
++.|+|.+|.|||++|.+....
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6679999999999999886543
No 351
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.38 E-value=0.064 Score=53.87 Aligned_cols=27 Identities=15% Similarity=0.404 Sum_probs=23.5
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.-++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999998654
No 352
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.37 E-value=0.063 Score=55.32 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
..|+|.|++|+||||+|+.+.+++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4788999999999999999998764
No 353
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.32 E-value=0.071 Score=54.26 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 354
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.31 E-value=0.072 Score=54.05 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+++|.|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998864
No 355
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=92.29 E-value=0.98 Score=49.85 Aligned_cols=156 Identities=12% Similarity=-0.038 Sum_probs=92.8
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHh-ccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLIS-WEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGER 132 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 132 (1099)
-.++..++|..|.||++.|+++.+.+. ..|+....+. + . ...++..+...+-. .-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~---~-~~~~~~~l~~~~~~-------------------~p 72 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-I---D-PNTDWNAIFSLCQA-------------------MS 72 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-C---C-TTCCHHHHHHHHHH-------------------HH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-e---c-CCCCHHHHHHHhcC-------------------cC
Confidence 356888999999999999999988664 3343221111 1 1 22334333322211 11
Q ss_pred hcCCeEEEEEeCCCC-h--hHHHHHhcCCCCCCCCCeEEEEeCC-------cccccccCCCCcceEecCCCCHHHHHHHH
Q 001326 133 LRRMKVLIVLDDVNK-V--GQLKYLAGGIDRFGPGSRIIITTRD-------KWILDNFGVHSSNIYEVNGLEYDEARELF 202 (1099)
Q Consensus 133 L~~kr~LlVLDdv~~-~--~~~~~l~~~~~~~~~gsrIiiTTR~-------~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf 202 (1099)
+-+.+-++|+|+++. . +..+.|...+....+++.+|++|.. ..+..... ....+++..+++.++..+.+
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~-sr~~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALA-NRSVQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHT-TTCEEEEECCCCTTHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHH-hCceEEEeeCCCHHHHHHHH
Confidence 335566788899865 3 4555555544444567777776643 12333321 11237899999999998888
Q ss_pred hhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 001326 203 CNYAFKENHCPDDLLALSKCVLKYANGNPLALTV 236 (1099)
Q Consensus 203 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 236 (1099)
...+-.... .--.+.+..+++.++|...++..
T Consensus 152 ~~~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 152 AARAKQLNL--ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHTTC--EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHcCC--CCCHHHHHHHHHHhchHHHHHHH
Confidence 777633221 11124566788889998876644
No 356
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.27 E-value=0.084 Score=52.34 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.++|+|..|+|||||++.+...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988654
No 357
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.24 E-value=0.12 Score=56.39 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=25.1
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
++.+||+|+|=|||||||.|..+.--+...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~ 75 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 75 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC
Confidence 467999999999999999999988765544
No 358
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.21 E-value=0.082 Score=56.11 Aligned_cols=26 Identities=23% Similarity=0.565 Sum_probs=23.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
..+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36889999999999999999998754
No 359
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.21 E-value=0.15 Score=58.10 Aligned_cols=41 Identities=29% Similarity=0.349 Sum_probs=30.3
Q ss_pred HHHHHhhcCC-------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 42 EKLISLLCVG-------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 42 ~~l~~~l~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
++|.+++..+ ....++|+|+|.+|+||||+|.++......+
T Consensus 79 ~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 79 EELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp HHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4566666432 1235799999999999999999998876544
No 360
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.18 E-value=0.079 Score=54.08 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=24.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
..+|+|.|+.|+||||+|+.+.+++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999876543
No 361
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.16 E-value=0.17 Score=52.94 Aligned_cols=35 Identities=23% Similarity=0.131 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
.++.|.|.+|+||||+|..++......-..++|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 58899999999999999988775544434566664
No 362
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.16 E-value=0.083 Score=53.78 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=23.3
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
....+|+|+|+.|.||||+|+.+...+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999998753
No 363
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.16 E-value=0.12 Score=55.69 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=23.1
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
...+|.|.|++|+||||+|+++..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45788999999999999999998865
No 364
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.16 E-value=0.078 Score=53.88 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+|+|+|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998865
No 365
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.11 E-value=0.087 Score=63.38 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=40.7
Q ss_pred CCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 30 DFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
..+.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred ccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 3356999998888888887644 4889999999999999999999765443
No 366
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.09 E-value=0.084 Score=55.48 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
..+|+|+|+.|+||||+++.+.+++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 367
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.05 E-value=0.093 Score=53.58 Aligned_cols=27 Identities=37% Similarity=0.426 Sum_probs=23.7
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
...+|+|.|..|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988654
No 368
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.98 E-value=0.072 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIF 76 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~ 76 (1099)
-.+++|+|..|.|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3689999999999999999643
No 369
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.98 E-value=0.073 Score=55.90 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+|+|+|+.|.||||+++.+...+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998764
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.89 E-value=0.095 Score=52.71 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999997743
No 371
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.82 E-value=0.097 Score=53.66 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.|+|.|++|+||||+|+.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 372
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.77 E-value=0.086 Score=55.63 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
-.+|+|.|+.|.||||+++.+..++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998763
No 373
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.74 E-value=0.11 Score=51.42 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=23.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
-.+|+|.|+.|.||||+|+.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36789999999999999999998764
No 374
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.59 E-value=0.15 Score=52.40 Aligned_cols=45 Identities=29% Similarity=0.150 Sum_probs=32.3
Q ss_pred cchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 36 GLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 36 Gr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
+.++..+++...+. ....++|+|+|.+|+|||||+.++.......
T Consensus 13 ~~~~~~~~~~~~~~--~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 13 ENKRLAEKNREALR--ESGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHH--HHTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred hcHHHHHHHHHhhc--ccCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 33444555555543 2356899999999999999999998876444
No 375
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.58 E-value=0.083 Score=54.73 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
..|+|.|++|+||||+|+.+.+++
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999999865
No 376
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.58 E-value=0.37 Score=54.53 Aligned_cols=29 Identities=28% Similarity=0.244 Sum_probs=25.0
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
..++|+|+|.+|+||||++..++..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999876554
No 377
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.56 E-value=0.12 Score=52.90 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=23.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
..+|.|.|+.|+||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998764
No 378
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.46 E-value=0.11 Score=52.64 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+|+|.|+.|+||||+|+.+..++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988764
No 379
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.43 E-value=0.08 Score=53.55 Aligned_cols=25 Identities=40% Similarity=0.476 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
++++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999988654
No 380
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.41 E-value=0.1 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.|+|.|++|+||||+|+.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 381
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.39 E-value=0.36 Score=53.14 Aligned_cols=26 Identities=31% Similarity=0.097 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
+-++|.|.+|+|||+|++.+.+.+..
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhh
Confidence 45689999999999999999987653
No 382
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.32 E-value=0.074 Score=54.41 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
+|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 383
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.32 E-value=0.11 Score=56.63 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+|+|.|+.|+||||||+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 384
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.30 E-value=0.097 Score=53.98 Aligned_cols=25 Identities=28% Similarity=0.107 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
..|.|.|++|+||||+|+.+.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5688999999999999999998764
No 385
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.29 E-value=0.18 Score=52.09 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.7
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.-.+++|+|..|+|||||++.+....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999998744
No 386
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.27 E-value=0.32 Score=52.55 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCc-eeEEEE
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFE-GRCFVS 90 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~ 90 (1099)
.+++|.|.+|+|||||++.++..+...-. .+.|+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 58899999999999999999887654422 344553
No 387
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.21 E-value=0.25 Score=50.83 Aligned_cols=40 Identities=23% Similarity=0.202 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 41 IEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 41 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
.+++...+. ......|+|+|.+|+|||||+..+.......
T Consensus 26 a~~~r~~~~--~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 26 ADKNRKLLN--KHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHH--HTTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHH--hCCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 344555443 2356788899999999999999998865433
No 388
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.16 E-value=0.14 Score=54.10 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=23.8
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
...+|.|.|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999998754
No 389
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.14 E-value=0.12 Score=55.57 Aligned_cols=25 Identities=28% Similarity=0.603 Sum_probs=22.2
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999983
No 390
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.14 E-value=0.12 Score=54.14 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.0
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
...+|+|.|..|.||||||+.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44789999999999999999998754
No 391
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.12 E-value=0.27 Score=51.45 Aligned_cols=35 Identities=31% Similarity=0.216 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh-ccCceeEEEE
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS-WEFEGRCFVS 90 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~ 90 (1099)
.+++|+|+.|+|||||++.+..... ..-...+|+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5899999999999999999985322 2223455553
No 392
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.11 E-value=0.47 Score=55.87 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=27.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
-.+++|.|..|+|||||++.++......-..++|+.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 358999999999999999999886554322344553
No 393
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.11 E-value=0.44 Score=54.12 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=34.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc-cCceeEEEEeccccccCCCCHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISW-EFEGRCFVSNVRVESENGHRLVYLRERVLS 111 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 111 (1099)
+-++|.|.+|+|||+|+..+.+.+.. +-+.++|. .+.+ ....+..+.+++..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGE---R~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGE---RTREGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESC---CHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCC---cchHHHHHHHHhhh
Confidence 46789999999999999999887643 33445554 3333 23344455555554
No 394
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.10 E-value=0.11 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+|+|.|+.|+||||+|+.+.+++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999876
No 395
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.02 E-value=0.13 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+|+|.|++|.||||+|+.+...+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998763
No 396
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.01 E-value=0.14 Score=55.73 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=25.1
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
....+|+|.|..|.||||||+.+...+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45689999999999999999999886643
No 397
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.01 E-value=0.32 Score=53.33 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=26.6
Q ss_pred HHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 43 KLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 43 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.|-.+|..+-+.-.++.|+|.+|+||||+|..++...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444443222334789999999999999999998753
No 398
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.00 E-value=0.28 Score=54.41 Aligned_cols=51 Identities=31% Similarity=0.284 Sum_probs=35.7
Q ss_pred hHHHHHHhhc-CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 40 RIEKLISLLC-VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 40 ~~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
-...|-.+|. .+-+.-+++.|+|.+|+||||||..+......+-..++|+.
T Consensus 47 G~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 47 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3445555564 22233468899999999999999999886654444577775
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.96 E-value=0.14 Score=52.63 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=21.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 400
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.82 E-value=0.12 Score=53.00 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
..|.|.|++|+||||+|+.+.+++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999876
No 401
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.79 E-value=0.15 Score=49.41 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=23.2
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.-.+++|.|..|.|||||++.+...+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999865
No 402
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.78 E-value=0.13 Score=53.39 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
..|.|.|+.|+||||+|+.+.+++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998764
No 403
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.78 E-value=0.1 Score=56.82 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.++|.|+|+.|+||||||..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 36899999999999999999998653
No 404
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.76 E-value=0.13 Score=52.43 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+++|+|+.|+|||||++.+.....
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999988653
No 405
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.72 E-value=0.14 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.|+|.|++|+||||+|+.+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999876
No 406
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.68 E-value=0.12 Score=56.01 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
++|.|+|+.|+||||||+.+..++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5889999999999999999998653
No 407
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.66 E-value=0.2 Score=52.16 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=27.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhc------cCceeEEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISW------EFEGRCFVS 90 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~ 90 (1099)
-.+++|+|.+|+||||||+.+...+.. .-..++|+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 358999999999999999999875322 134567775
No 408
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.60 E-value=0.14 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.|+|.|++|+||||+|+.+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 409
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.57 E-value=0.19 Score=49.42 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.++++|.|..|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 468999999999999999999987654
No 410
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.47 E-value=0.18 Score=56.22 Aligned_cols=29 Identities=38% Similarity=0.405 Sum_probs=24.4
Q ss_pred CCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 52 FPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 52 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
-+..++++|+|+.|.|||||++.+.....
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34456999999999999999999998653
No 411
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.41 E-value=0.14 Score=51.20 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+++|+|..|+|||||++.++....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988653
No 412
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.40 E-value=0.23 Score=56.58 Aligned_cols=52 Identities=25% Similarity=0.213 Sum_probs=35.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc-cCceeEEEEeccccccCCCCHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISW-EFEGRCFVSNVRVESENGHRLVYLRERVLS 111 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 111 (1099)
+-++|.|.+|+|||+|+..+.+.+.. +-+.++|. .+.+ .......+.+++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGE---R~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGE---RTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESC---CSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-Eccc---CcHHHHHHHHhhhc
Confidence 46789999999999999999987643 34555555 3433 33345555555544
No 413
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.29 E-value=0.13 Score=52.88 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998855
No 414
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.21 E-value=0.82 Score=53.54 Aligned_cols=53 Identities=6% Similarity=-0.157 Sum_probs=38.6
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhcc-CceeEEEEeccccccCCCCHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWE-FEGRCFVSNVRVESENGHRLVYLRERVLSEIF 114 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 114 (1099)
-.++.|.|.+|+||||+|..++..+..+ -..++|+. -.....++...++....
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s-------~E~s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM-------LEESVEETAEDLIGLHN 295 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE-------SSSCHHHHHHHHHHHHT
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe-------ccCCHHHHHHHHHHHHc
Confidence 3578899999999999999998877654 34567765 34456677777665543
No 415
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.20 E-value=0.46 Score=50.80 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+++|+|.+|+||||||..+...+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5889999999999999999987554
No 416
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.16 E-value=0.31 Score=49.68 Aligned_cols=27 Identities=19% Similarity=-0.005 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
-.|.+.|.||+||||+|..+......+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 347789999999999999998876554
No 417
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.09 E-value=0.17 Score=54.43 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
++|+|.|+.|+||||||..++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 588999999999999999999865
No 418
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.08 E-value=0.25 Score=51.81 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=26.2
Q ss_pred HHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 44 LISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 44 l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+..++....+....|.++|++|.|||++|.++++..
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 334443322335578899999999999999999853
No 419
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.91 E-value=0.17 Score=51.89 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=23.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
-.+++|+|+.|+|||||++.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35899999999999999999998764
No 420
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.84 E-value=0.3 Score=51.61 Aligned_cols=27 Identities=41% Similarity=0.446 Sum_probs=23.9
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
...++.+.|.||+||||++..+...+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999988665
No 421
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.72 E-value=0.097 Score=56.43 Aligned_cols=27 Identities=19% Similarity=0.382 Sum_probs=20.5
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
...+|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988654
No 422
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.66 E-value=0.28 Score=53.31 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=27.8
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEE
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFV 89 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 89 (1099)
...++|+|+|-||+||||+|..++..+..+-..++.+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 3568899999999999999999988765543334444
No 423
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.64 E-value=0.11 Score=50.97 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
++++|+|..|.|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999886654
No 424
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.61 E-value=0.19 Score=52.33 Aligned_cols=27 Identities=30% Similarity=0.185 Sum_probs=23.7
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
....+|+|.|+.|.||||+++.+..++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999999865
No 425
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.57 E-value=0.27 Score=57.00 Aligned_cols=48 Identities=6% Similarity=-0.117 Sum_probs=33.7
Q ss_pred cccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 34 LVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 34 ~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.+.|.+..+.+.+..........+|.+.|+.|.||||+|+++..++..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 444444455566655221223468889999999999999999998864
No 426
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.56 E-value=0.47 Score=56.29 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=23.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
+++.|.|.+|.||||++.++...+...-
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g 232 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG 232 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 5788999999999999999988665443
No 427
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.44 E-value=0.32 Score=51.69 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=26.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEE
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFV 89 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 89 (1099)
++|+|.|-||+||||+|..+...+..+-..+..+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5788899999999999999998776543334444
No 428
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.33 E-value=0.21 Score=53.56 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=23.2
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
..++|.|.|+.|+||||||..++++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999874
No 429
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.33 E-value=0.32 Score=52.51 Aligned_cols=36 Identities=25% Similarity=0.221 Sum_probs=27.6
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
..++++|+|.+|+||||++..++..+... ...+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 35799999999999999999999876544 2344443
No 430
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.23 E-value=0.21 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
.+|.|.|++|+||||+|+.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999884
No 431
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.19 E-value=0.23 Score=54.02 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=24.6
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
....+|||.|..|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988765
No 432
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=89.05 E-value=0.48 Score=53.47 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=48.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccCc---eeEEEEeccccccCCCCHHHHHHHHHHHHhcccc----cccCCC-hhH-
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISWEFE---GRCFVSNVRVESENGHRLVYLRERVLSEIFEENI----KIETPC-LPE- 127 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~----~~~~~~-~~~- 127 (1099)
-++|.|.+|+|||+|+..+.+....+.+ ..+.+..+.+ ....+..+.+.+...-..+.. ...+.. ..+
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGe---R~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGI---TFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEE---CHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecC---CcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 4689999999999999999886554222 2333333433 233444555554443111110 111211 111
Q ss_pred -------HHHHHh---cCCeEEEEEeCCCCh
Q 001326 128 -------YIGERL---RRMKVLIVLDDVNKV 148 (1099)
Q Consensus 128 -------~l~~~L---~~kr~LlVLDdv~~~ 148 (1099)
.+.+++ .++.+||++||+...
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~ 260 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMTNY 260 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 223333 378999999999543
No 433
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.05 E-value=0.14 Score=53.07 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=16.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHH-HHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIF-NLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~-~~~ 79 (1099)
.+++|+|+.|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 654
No 434
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.93 E-value=0.27 Score=50.91 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.7
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.-.+|+|.|+.|+||||+++.+.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468899999999999999999998765
No 435
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.82 E-value=0.21 Score=49.68 Aligned_cols=24 Identities=29% Similarity=0.169 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+.|.|.|..|+||||||.++..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 567899999999999999998863
No 436
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.76 E-value=0.52 Score=49.18 Aligned_cols=36 Identities=31% Similarity=0.188 Sum_probs=25.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHH-HhccCceeEEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNL-ISWEFEGRCFVS 90 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~-~~~~f~~~~~~~ 90 (1099)
-.++.|.|.+|+||||+|..++.. ....-..++|+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 358889999999999999987654 333334455654
No 437
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.61 E-value=0.56 Score=51.79 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=25.3
Q ss_pred CCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 52 FPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 52 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
..+..+|+|+|.+|+||||++..+......
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 346789999999999999999999876543
No 438
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.55 E-value=0.23 Score=51.69 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.6
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+. .+++|+|..|.|||||++.+..-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 789999999999999999998643
No 439
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.51 E-value=0.32 Score=53.54 Aligned_cols=38 Identities=32% Similarity=0.350 Sum_probs=28.1
Q ss_pred HHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 44 LISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 44 l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
+.+-+...-....+++|+|.+|+|||||.+.+...+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 33334333345689999999999999999999876543
No 440
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=88.50 E-value=0.25 Score=49.93 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.+|+|.|+.|.||||+|+.+.+++.-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 58999999999999999999998753
No 441
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.50 E-value=0.21 Score=62.03 Aligned_cols=53 Identities=30% Similarity=0.325 Sum_probs=40.6
Q ss_pred CCccccchhhHHHHHHhhcCC-----------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 31 FKGLVGLSSRIEKLISLLCVG-----------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
.+.++|.+...+++.+.+... -...+.+.++|++|+||||||++++......|
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 356889998888888877521 12345688999999999999999999875443
No 442
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.48 E-value=0.19 Score=51.12 Aligned_cols=23 Identities=48% Similarity=0.229 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
.+++|+|..|.|||||++.+...
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999864
No 443
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.33 E-value=0.24 Score=51.52 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
.+++|+|+.|.|||||++.+..-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999753
No 444
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.29 E-value=0.2 Score=57.02 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=23.1
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
...+|.|+|++|.||||+|+++..+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998865
No 445
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.28 E-value=0.39 Score=51.67 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
++|+|.|-||+||||+|..++..+..+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 688889999999999999998876544
No 446
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.22 E-value=0.39 Score=56.23 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=25.5
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
...+|.++|++|.||||+|+++...+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 356899999999999999999998775544
No 447
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.19 E-value=0.21 Score=51.52 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
.+++|+|..|.|||||++.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999753
No 448
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.01 E-value=0.34 Score=48.43 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.8
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
..-.|+|+|..|+|||||++.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567899999999999999999874
No 449
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.97 E-value=0.25 Score=51.73 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=25.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEE
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFV 89 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 89 (1099)
.+++|+|..|.|||||++.+...+... +.+++
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~ 58 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK--GSIQF 58 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEE
Confidence 489999999999999999998765543 45554
No 450
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.91 E-value=0.3 Score=54.46 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998764
No 451
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.89 E-value=0.45 Score=62.77 Aligned_cols=50 Identities=32% Similarity=0.296 Sum_probs=34.1
Q ss_pred HHHHHHhhc-CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 41 IEKLISLLC-VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 41 ~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
..+|-.++. .+-..-.+|.|.|.+|+||||||.++......+-..+.|+.
T Consensus 717 ~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 717 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 344445553 22223458889999999999999999887655444566664
No 452
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.87 E-value=0.28 Score=51.23 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
...|+|.|..|+||||+|+.+.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36789999999999999999998764
No 453
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.83 E-value=0.38 Score=64.34 Aligned_cols=37 Identities=32% Similarity=0.331 Sum_probs=29.9
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
.-+.|.|+|++|+|||+||.++......+-..+.|+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4568899999999999999999887665545567774
No 454
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.70 E-value=0.53 Score=47.65 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=25.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFE 84 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 84 (1099)
+.|+|-|.-|+||||+++.+.+.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999998865544
No 455
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.67 E-value=0.46 Score=47.30 Aligned_cols=25 Identities=24% Similarity=0.068 Sum_probs=21.4
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
....|+|+|.+|+|||||+.++...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457789999999999999999874
No 456
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.66 E-value=0.28 Score=51.09 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+++|+|..|.|||||++.+...+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998643
No 457
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.64 E-value=0.37 Score=46.74 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5688999999999999999976
No 458
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.63 E-value=0.29 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
.+++|+|..|.|||||++.+...
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 459
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.51 E-value=0.28 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
.+++|+|+.|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999965
No 460
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.50 E-value=0.3 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999874
No 461
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.49 E-value=0.34 Score=46.41 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
+-|+|+|.+|+|||||+.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999763
No 462
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.41 E-value=0.54 Score=52.06 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.8
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+.-.++.|+|..|+|||||++.++..+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998865
No 463
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.38 E-value=0.56 Score=47.76 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=24.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
..|.|.|+.|+||||+++.+.+.+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 578899999999999999999987654
No 464
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.35 E-value=0.3 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
.+++|+|..|.|||||++.++..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 465
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.28 E-value=0.34 Score=49.72 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
-.+||.|++|+||||+|+.+.+++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999999876
No 466
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.27 E-value=0.27 Score=51.29 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
.+++|+|..|.|||||++.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 467
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.25 E-value=0.29 Score=51.73 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
.+++|+|+.|.|||||++.+..-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999764
No 468
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.22 E-value=0.23 Score=50.68 Aligned_cols=23 Identities=43% Similarity=0.590 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
.+++|+|..|.|||||++.++..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999763
No 469
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.13 E-value=0.3 Score=51.74 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+++|+|..|.|||||++.+..-+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999997644
No 470
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.12 E-value=0.3 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
.+++|+|..|.|||||++.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999975
No 471
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.11 E-value=0.27 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
.+++|+|..|.|||||++.+...
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 58999999999999999999763
No 472
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=87.11 E-value=0.48 Score=47.76 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=26.0
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 56 RIVGIW-GMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 56 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
++|+|+ +-||+||||+|..+...+..+-..+..++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 578887 77999999999999887665433344443
No 473
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.08 E-value=0.28 Score=51.80 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
.+++|+|..|.|||||++.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999965
No 474
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=87.08 E-value=0.58 Score=48.73 Aligned_cols=36 Identities=22% Similarity=0.122 Sum_probs=26.6
Q ss_pred CEEEEEEE-cCCCCcHHHHHHHHHHHHhcc-CceeEEE
Q 001326 54 DFRIVGIW-GMAGIGKTTLAGAIFNLISWE-FEGRCFV 89 (1099)
Q Consensus 54 ~~~vv~I~-G~gGiGKTtLA~~v~~~~~~~-f~~~~~~ 89 (1099)
..++|+|+ +-||+||||+|..+...+..+ -..++.+
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 35778877 568999999999999987765 3334444
No 475
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.03 E-value=0.45 Score=55.94 Aligned_cols=27 Identities=33% Similarity=0.245 Sum_probs=24.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
-.+|+|+|+.|.|||||++.+...+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 368999999999999999999998754
No 476
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.03 E-value=0.28 Score=50.71 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+++|+|..|.|||||++.+...+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998744
No 477
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=87.02 E-value=1.5 Score=60.93 Aligned_cols=151 Identities=10% Similarity=-0.011 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHh----
Q 001326 58 VGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERL---- 133 (1099)
Q Consensus 58 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L---- 133 (1099)
|.++|++|+|||++|+.+.......--..+-.. ...+...+++.+-..+......... .
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~~~~~~~~infs-------a~ts~~~~~~~i~~~~~~~~~~~g~----------~~~P~ 1332 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNSSLYDVVGINFS-------KDTTTEHILSALHRHTNYVTTSKGL----------TLLPK 1332 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCSSCEEEEEECC-------TTCCHHHHHHHHHHHBCCEEETTTE----------EEEEB
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCCceEEEEee-------cCCCHHHHHHHHHHHhhhccccCCc----------cccCC
Q ss_pred -cCCeEEEEEeCCCChh-----------HHHHHhcCCCCCCCCCeEEEEeCCcccccccCCC----------------Cc
Q 001326 134 -RRMKVLIVLDDVNKVG-----------QLKYLAGGIDRFGPGSRIIITTRDKWILDNFGVH----------------SS 185 (1099)
Q Consensus 134 -~~kr~LlVLDdv~~~~-----------~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~----------------~~ 185 (1099)
.+|+.++.+||++-.. -+..+...-.+......-.++-.+-.+...++.. .
T Consensus 1333 ~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~- 1411 (2695)
T 4akg_A 1333 SDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAA- 1411 (2695)
T ss_dssp SSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEE-
T ss_pred CCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheee-
Q ss_pred ceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHh
Q 001326 186 NIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYA 227 (1099)
Q Consensus 186 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~ 227 (1099)
++.++.++.++-.++|.......-...++...++..+++.+
T Consensus 1412 -vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1412 -ILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp -EEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred -EEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 478
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.94 E-value=0.29 Score=51.30 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
.+++|+|..|.|||||++.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999965
No 479
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.92 E-value=0.31 Score=48.33 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
-|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367999999999999999876
No 480
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.86 E-value=0.33 Score=52.33 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=22.9
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.-.+++|+|+.|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34689999999999999999998765
No 481
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.78 E-value=0.29 Score=51.47 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
.+++|+|..|.|||||++.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999975
No 482
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.72 E-value=0.3 Score=50.02 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+|+|.|+.|+||||+|+.+..++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999998865
No 483
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=86.69 E-value=1.2 Score=45.55 Aligned_cols=108 Identities=11% Similarity=0.002 Sum_probs=52.6
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhc
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLR 134 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 134 (1099)
-.+..++|.-|.||||-|.....+...+-..++.+.... . .+++ ..+...+- +.......... .+ +.+..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~--D-~Ryg-~~i~sr~G--~~~~a~~i~~~--~d-i~~~~- 88 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK--D-TRYS-SSFCTHDR--NTMEALPACLL--RD-VAQEA- 88 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT--C-CCC--------------CEEEEESSG--GG-GHHHH-
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC--C-ccch-HHHHhhcC--CeeEEEecCCH--HH-HHHHh-
Confidence 468889999999999888877766544433333332111 1 3334 33333331 11111111111 11 22222
Q ss_pred CCeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCCc
Q 001326 135 RMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRDK 174 (1099)
Q Consensus 135 ~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~ 174 (1099)
++--+|++|++.-...+.++...+.. .|-.||+|.++.
T Consensus 89 ~~~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~~ 126 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALDG 126 (234)
T ss_dssp TTCSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCSB
T ss_pred ccCCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEeccc
Confidence 33349999998433224443333222 577999999984
No 484
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.46 E-value=0.49 Score=45.63 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=20.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
.--|+|+|.+|+|||||+.++...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345679999999999999999873
No 485
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.45 E-value=0.35 Score=51.10 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+++|+|..|.|||||++.+...+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 489999999999999999997643
No 486
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.45 E-value=0.36 Score=46.35 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
-|+++|.+|+|||||+.++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4779999999999999999763
No 487
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.44 E-value=0.43 Score=47.21 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
...|+|+|.+|+|||||...+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45788999999999999999986
No 488
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=86.42 E-value=1.2 Score=55.77 Aligned_cols=22 Identities=23% Similarity=-0.109 Sum_probs=20.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIF 76 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~ 76 (1099)
-.+++|+|+.|.||||+.+.+.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999984
No 489
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.37 E-value=0.32 Score=51.74 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
.+++|+|..|.|||||++.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999965
No 490
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=86.24 E-value=0.82 Score=53.80 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=23.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
..+|.+.|++|+||||+|+.+..++..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 578999999999999999999987643
No 491
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.19 E-value=0.33 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
.+++|+|..|.|||||++.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999975
No 492
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.13 E-value=0.33 Score=51.82 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+++|+|..|.|||||++.++..+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999997643
No 493
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.08 E-value=0.33 Score=51.01 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+++|+|..|.|||||++.++..+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998643
No 494
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.07 E-value=0.4 Score=47.61 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
--|+|+|.+|+|||||+.++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35679999999999999999863
No 495
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=86.04 E-value=0.6 Score=54.13 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=24.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
..+|.++|++|+||||+|+++.......|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 46788999999999999999998765544
No 496
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.04 E-value=0.39 Score=47.47 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+.+|+|..|.|||||+.+++--+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999998754
No 497
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=85.99 E-value=0.58 Score=46.14 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.0
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
...-|+|+|.+|+|||||..++...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4456789999999999999998753
No 498
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=85.91 E-value=0.65 Score=51.99 Aligned_cols=39 Identities=15% Similarity=0.058 Sum_probs=29.1
Q ss_pred CCCEEEEEEEc-CCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 52 FPDFRIVGIWG-MAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 52 ~~~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
....++|+|+| -||+||||+|..++..+..+-..++.++
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34678999985 9999999999999887655433345443
No 499
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=85.67 E-value=0.54 Score=48.13 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=24.7
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
....|.|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3578899999999999999999998765
No 500
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=85.59 E-value=0.49 Score=48.57 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=23.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
..+|+|.|+.|+||||+|+.+.+++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46999999999999999999999874
Done!