Query 001328
Match_columns 1099
No_of_seqs 450 out of 3428
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 21:56:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0964 Structural maintenance 100.0 5E-117 1E-121 939.2 127.5 1085 1-1087 1-1090(1200)
2 COG1196 Smc Chromosome segrega 100.0 3E-104 6E-109 970.6 135.0 1034 1-1088 1-1062(1163)
3 KOG0996 Structural maintenance 100.0 3E-88 6.6E-93 737.6 114.1 1037 1-1094 84-1195(1293)
4 TIGR02169 SMC_prok_A chromosom 100.0 3.4E-85 7.3E-90 838.1 136.6 1042 2-1089 1-1071(1164)
5 KOG0933 Structural maintenance 100.0 1.6E-81 3.4E-86 672.4 113.2 1028 1-1084 1-1074(1174)
6 KOG0018 Structural maintenance 100.0 6.8E-76 1.5E-80 636.8 100.8 1012 1-1087 2-1046(1141)
7 TIGR02168 SMC_prok_B chromosom 100.0 2.9E-72 6.2E-77 723.1 127.1 1032 2-1088 1-1085(1179)
8 KOG0250 DNA repair protein RAD 100.0 2.8E-46 6.1E-51 411.7 101.6 573 2-654 41-637 (1074)
9 KOG0979 Structural maintenance 100.0 1.1E-40 2.4E-45 361.4 87.9 232 3-247 22-265 (1072)
10 TIGR00606 rad50 rad50. This fa 100.0 2.9E-37 6.3E-42 384.9 113.7 207 824-1044 950-1163(1311)
11 PRK02224 chromosome segregatio 100.0 3.5E-38 7.6E-43 385.4 101.3 155 1-170 1-166 (880)
12 PRK03918 chromosome segregatio 100.0 7.6E-35 1.6E-39 357.8 103.4 179 1-193 1-185 (880)
13 PRK04863 mukB cell division pr 100.0 3.4E-30 7.4E-35 311.5 106.1 278 2-291 6-416 (1486)
14 PRK01156 chromosome segregatio 100.0 2.7E-30 5.9E-35 315.2 103.6 173 1-189 1-185 (895)
15 COG0419 SbcC ATPase involved i 100.0 3.1E-27 6.7E-32 285.2 102.0 183 1-194 1-195 (908)
16 PRK10246 exonuclease subunit S 100.0 8.6E-24 1.9E-28 256.7 102.5 181 1-193 1-207 (1047)
17 TIGR00618 sbcc exonuclease Sbc 100.0 2.4E-23 5.3E-28 255.7 107.3 182 1-193 1-203 (1042)
18 TIGR02680 conserved hypothetic 100.0 5.6E-24 1.2E-28 262.9 100.7 268 2-277 3-323 (1353)
19 COG1196 Smc Chromosome segrega 100.0 1.4E-22 3.1E-27 250.3 104.2 755 171-1032 180-1031(1163)
20 KOG0962 DNA repair protein RAD 100.0 3.9E-22 8.4E-27 227.8 96.5 160 2-172 3-187 (1294)
21 TIGR02169 SMC_prok_A chromosom 100.0 2.8E-22 6.1E-27 257.8 108.2 314 699-1031 719-1039(1164)
22 TIGR02168 SMC_prok_B chromosom 100.0 4E-23 8.6E-28 267.1 99.5 562 180-769 168-764 (1179)
23 PHA02562 46 endonuclease subun 100.0 3.3E-26 7.1E-31 266.4 43.5 195 1-209 2-206 (562)
24 KOG0996 Structural maintenance 99.9 8.2E-18 1.8E-22 187.2 91.9 328 522-920 690-1039(1293)
25 PRK10869 recombination and rep 99.9 7.1E-24 1.5E-28 237.1 45.4 314 2-344 1-333 (553)
26 TIGR00634 recN DNA repair prot 99.9 7.2E-24 1.6E-28 241.0 44.8 189 2-212 1-203 (563)
27 KOG0933 Structural maintenance 99.9 2.2E-18 4.7E-23 188.1 81.0 82 948-1033 966-1049(1174)
28 PF12128 DUF3584: Protein of u 99.9 6.3E-17 1.4E-21 200.4 102.3 104 23-133 16-138 (1201)
29 PF13514 AAA_27: AAA domain 99.9 2.5E-18 5.4E-23 212.7 87.0 138 30-182 1-142 (1111)
30 KOG0964 Structural maintenance 99.9 5.1E-16 1.1E-20 169.0 89.2 320 179-498 172-491 (1200)
31 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.1E-22 2.4E-27 207.7 16.6 152 1-152 1-158 (251)
32 COG4717 Uncharacterized conser 99.9 3.9E-14 8.5E-19 153.5 81.6 152 1-167 1-158 (984)
33 TIGR03185 DNA_S_dndD DNA sulfu 99.9 1.5E-18 3.1E-23 201.8 49.8 166 1-171 1-187 (650)
34 KOG0161 Myosin class II heavy 99.9 4.7E-13 1E-17 163.4 95.5 55 117-171 733-789 (1930)
35 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.6E-21 3.5E-26 198.0 15.5 144 3-153 1-146 (247)
36 COG0497 RecN ATPase involved i 99.9 3.3E-18 7.1E-23 182.1 39.7 317 2-347 1-337 (557)
37 KOG0161 Myosin class II heavy 99.8 5.6E-12 1.2E-16 154.2 92.1 75 694-768 1320-1395(1930)
38 cd03272 ABC_SMC3_euk Eukaryoti 99.8 1.7E-20 3.7E-25 192.0 16.6 149 3-151 1-149 (243)
39 PF02463 SMC_N: RecF/RecN/SMC 99.8 2.9E-20 6.3E-25 187.0 13.3 137 2-143 1-141 (220)
40 COG4913 Uncharacterized protei 99.8 5.3E-12 1.1E-16 133.5 71.6 102 1-110 15-144 (1104)
41 KOG0018 Structural maintenance 99.8 7E-11 1.5E-15 132.0 83.6 168 171-339 168-335 (1141)
42 PRK14079 recF recombination pr 99.8 3.5E-18 7.7E-23 181.1 23.4 138 1-164 1-138 (349)
43 cd03241 ABC_RecN RecN ATPase i 99.8 6E-19 1.3E-23 182.1 14.2 137 3-161 1-147 (276)
44 cd03242 ABC_RecF RecF is a rec 99.8 1.9E-18 4.2E-23 177.7 16.3 138 3-164 1-139 (270)
45 PRK00064 recF recombination pr 99.8 1.2E-17 2.7E-22 178.2 21.7 139 1-164 1-141 (361)
46 TIGR00606 rad50 rad50. This fa 99.8 3.4E-11 7.3E-16 152.1 79.9 132 2-143 2-160 (1311)
47 COG3096 MukB Uncharacterized p 99.7 7.5E-10 1.6E-14 117.7 93.2 47 2-50 6-52 (1480)
48 PRK02224 chromosome segregatio 99.7 7.1E-09 1.5E-13 128.0 83.4 43 999-1044 718-761 (880)
49 cd03277 ABC_SMC5_euk Eukaryoti 99.7 2.8E-16 6.1E-21 153.9 10.7 108 2-156 2-110 (213)
50 TIGR00611 recf recF protein. A 99.7 8.8E-15 1.9E-19 155.5 22.8 151 1-174 1-154 (365)
51 KOG4674 Uncharacterized conser 99.6 8E-08 1.7E-12 116.2 87.5 64 863-926 1234-1297(1822)
52 KOG0250 DNA repair protein RAD 99.6 3.6E-08 7.7E-13 112.1 79.7 192 171-362 222-414 (1074)
53 cd03239 ABC_SMC_head The struc 99.6 1.2E-15 2.6E-20 144.6 8.1 81 3-85 1-82 (178)
54 PF13555 AAA_29: P-loop contai 99.6 8.5E-16 1.8E-20 111.3 5.0 49 3-53 1-51 (62)
55 COG1195 RecF Recombinational D 99.6 1.7E-13 3.6E-18 139.6 21.1 155 1-180 1-159 (363)
56 PRK04863 mukB cell division pr 99.6 5.2E-07 1.1E-11 111.9 83.5 121 171-291 301-423 (1486)
57 PRK04778 septation ring format 99.5 9.9E-09 2.1E-13 117.3 58.2 170 850-1030 354-526 (569)
58 PF12128 DUF3584: Protein of u 99.5 1E-06 2.3E-11 110.4 83.1 17 32-51 49-65 (1201)
59 cd03276 ABC_SMC6_euk Eukaryoti 99.5 3.6E-14 7.8E-19 137.7 8.3 78 3-86 1-79 (198)
60 PF13476 AAA_23: AAA domain; P 99.5 2E-14 4.3E-19 144.0 6.1 49 5-55 1-49 (202)
61 cd03279 ABC_sbcCD SbcCD and ot 99.5 9.4E-14 2E-18 137.8 8.0 81 1-86 1-86 (213)
62 cd03240 ABC_Rad50 The catalyti 99.5 1.8E-13 3.9E-18 133.8 9.7 89 3-102 1-91 (204)
63 PF06470 SMC_hinge: SMC protei 99.4 8E-13 1.7E-17 118.0 11.5 113 522-634 2-120 (120)
64 cd03274 ABC_SMC4_euk Eukaryoti 99.4 2.5E-13 5.3E-18 133.4 8.8 85 1-85 1-86 (212)
65 cd03278 ABC_SMC_barmotin Barmo 99.4 6.7E-13 1.4E-17 128.8 8.3 85 3-88 1-88 (197)
66 KOG4674 Uncharacterized conser 99.4 6.2E-06 1.3E-10 100.5 95.1 68 670-737 635-702 (1822)
67 PF10174 Cast: RIM-binding pro 99.4 3.1E-06 6.7E-11 97.0 66.6 27 977-1003 571-597 (775)
68 PF10174 Cast: RIM-binding pro 99.2 2.1E-05 4.6E-10 90.3 79.2 30 900-929 569-598 (775)
69 PF01576 Myosin_tail_1: Myosin 99.2 1.6E-12 3.4E-17 153.9 0.0 74 860-933 576-649 (859)
70 PF01576 Myosin_tail_1: Myosin 99.2 2.2E-12 4.7E-17 152.7 0.2 55 950-1011 802-856 (859)
71 PRK03918 chromosome segregatio 99.2 6E-05 1.3E-09 93.9 86.7 32 1013-1044 735-766 (880)
72 PF07888 CALCOCO1: Calcium bin 99.0 1.7E-05 3.6E-10 85.7 43.0 37 455-491 419-455 (546)
73 COG3950 Predicted ATP-binding 99.0 2.8E-10 6E-15 111.3 5.4 49 1-51 1-50 (440)
74 cd03227 ABC_Class2 ABC-type Cl 99.0 5.2E-10 1.1E-14 105.3 5.6 51 6-57 2-54 (162)
75 PF07888 CALCOCO1: Calcium bin 98.9 0.00015 3.4E-09 78.4 45.0 35 980-1014 422-456 (546)
76 KOG0979 Structural maintenance 98.9 0.00028 6.1E-09 80.2 68.2 68 145-212 141-216 (1072)
77 PRK01156 chromosome segregatio 98.9 0.00081 1.8E-08 83.5 81.9 17 95-111 66-82 (895)
78 PF11398 DUF2813: Protein of u 98.9 2.2E-09 4.7E-14 111.9 7.2 81 1-85 1-83 (373)
79 PF00261 Tropomyosin: Tropomyo 98.8 1.3E-05 2.8E-10 80.3 30.8 35 784-818 94-128 (237)
80 PF00261 Tropomyosin: Tropomyo 98.8 1.2E-05 2.7E-10 80.4 30.2 83 414-496 144-226 (237)
81 PF13166 AAA_13: AAA domain 98.8 8.9E-05 1.9E-09 89.7 43.7 40 10-50 1-41 (712)
82 COG5293 Predicted ATPase [Gene 98.7 0.00021 4.5E-09 73.1 34.5 30 22-51 22-62 (591)
83 COG1106 Predicted ATPases [Gen 98.7 1.3E-08 2.9E-13 105.2 4.9 48 2-51 1-48 (371)
84 COG3593 Predicted ATP-dependen 98.6 4.4E-08 9.6E-13 107.1 6.7 82 1-85 1-84 (581)
85 TIGR02680 conserved hypothetic 98.5 0.012 2.7E-07 75.0 86.9 124 640-769 706-831 (1353)
86 KOG0994 Extracellular matrix g 98.5 0.0054 1.2E-07 70.5 53.9 18 229-246 1200-1217(1758)
87 KOG0977 Nuclear envelope prote 98.5 0.0037 7.9E-08 68.2 38.6 166 173-338 38-214 (546)
88 PF04310 MukB: MukB N-terminal 98.5 1.5E-07 3.3E-12 85.1 4.7 48 2-51 6-53 (227)
89 COG4637 Predicted ATPase [Gene 98.5 7.2E-08 1.6E-12 93.9 2.8 46 1-49 1-46 (373)
90 PF00038 Filament: Intermediat 98.5 0.0039 8.5E-08 66.5 40.0 54 228-281 52-105 (312)
91 PF13175 AAA_15: AAA ATPase do 98.4 2E-07 4.4E-12 105.4 4.9 48 3-51 1-48 (415)
92 PRK04778 septation ring format 98.4 0.0099 2.1E-07 68.7 42.7 78 173-250 101-185 (569)
93 PF00038 Filament: Intermediat 98.3 0.0098 2.1E-07 63.5 40.4 51 876-926 199-249 (312)
94 KOG0994 Extracellular matrix g 98.2 0.023 5.1E-07 65.6 58.3 28 984-1011 1712-1739(1758)
95 COG4604 CeuD ABC-type enteroch 98.2 1E-06 2.2E-11 79.7 3.6 45 7-51 3-53 (252)
96 COG1120 FepC ABC-type cobalami 98.2 2.3E-06 5.1E-11 84.1 6.2 27 25-51 28-54 (258)
97 KOG0977 Nuclear envelope prote 98.1 0.027 5.8E-07 61.7 38.5 25 948-972 297-321 (546)
98 KOG1029 Endocytic adaptor prot 98.1 0.032 6.9E-07 61.8 36.4 13 29-41 56-68 (1118)
99 PRK11637 AmiB activator; Provi 98.1 0.0085 1.8E-07 66.8 32.3 78 670-751 46-123 (428)
100 COG3910 Predicted ATPase [Gene 98.1 3.1E-06 6.7E-11 76.0 3.4 30 22-51 34-63 (233)
101 COG4674 Uncharacterized ABC-ty 98.0 1.5E-06 3.2E-11 78.6 1.1 37 8-46 15-52 (249)
102 PRK11637 AmiB activator; Provi 98.0 0.011 2.4E-07 65.9 31.4 80 675-758 44-123 (428)
103 PF09726 Macoilin: Transmembra 98.0 0.018 3.8E-07 66.9 32.2 37 897-933 619-655 (697)
104 PF05557 MAD: Mitotic checkpoi 97.9 5.8E-05 1.2E-09 90.0 12.5 31 1014-1044 623-660 (722)
105 PF09726 Macoilin: Transmembra 97.9 0.012 2.6E-07 68.2 30.3 31 465-495 620-650 (697)
106 COG1122 CbiO ABC-type cobalt t 97.9 7.7E-06 1.7E-10 80.7 4.2 124 23-167 27-171 (235)
107 COG1126 GlnQ ABC-type polar am 97.9 8.9E-06 1.9E-10 75.6 4.2 44 6-49 3-52 (240)
108 COG1121 ZnuC ABC-type Mn/Zn tr 97.9 8.8E-06 1.9E-10 79.6 4.4 110 25-148 30-149 (254)
109 KOG4643 Uncharacterized coiled 97.9 0.079 1.7E-06 60.9 45.0 39 170-208 184-222 (1195)
110 COG3839 MalK ABC-type sugar tr 97.9 7.4E-06 1.6E-10 84.3 3.9 50 5-54 3-58 (338)
111 COG4559 ABC-type hemin transpo 97.9 1E-05 2.2E-10 74.6 4.3 28 23-50 24-52 (259)
112 PHA02562 46 endonuclease subun 97.9 0.0057 1.2E-07 72.0 28.4 14 153-166 113-126 (562)
113 PF06160 EzrA: Septation ring 97.9 0.088 1.9E-06 60.6 54.0 167 852-1029 352-521 (560)
114 COG1116 TauB ABC-type nitrate/ 97.9 1.1E-05 2.4E-10 77.6 4.5 30 25-54 29-58 (248)
115 COG4938 Uncharacterized conser 97.9 9E-06 1.9E-10 77.8 3.8 47 2-51 1-47 (374)
116 COG1579 Zn-ribbon protein, pos 97.9 0.011 2.3E-07 57.4 24.4 32 344-375 47-78 (239)
117 COG1340 Uncharacterized archae 97.9 0.034 7.4E-07 55.3 32.9 13 952-964 233-245 (294)
118 COG1124 DppF ABC-type dipeptid 97.8 2.1E-05 4.5E-10 74.9 5.0 111 23-148 30-151 (252)
119 KOG0946 ER-Golgi vesicle-tethe 97.8 0.032 6.9E-07 62.4 28.1 15 112-126 562-576 (970)
120 PF09730 BicD: Microtubule-ass 97.7 0.16 3.4E-06 58.4 63.9 65 948-1019 641-705 (717)
121 COG1579 Zn-ribbon protein, pos 97.7 0.023 5E-07 55.2 23.3 50 717-766 31-80 (239)
122 COG0411 LivG ABC-type branched 97.7 7.1E-06 1.5E-10 78.1 -0.6 27 25-51 30-56 (250)
123 KOG4673 Transcription factor T 97.6 0.17 3.6E-06 55.6 55.7 14 396-409 611-624 (961)
124 COG4133 CcmA ABC-type transpor 97.6 3.8E-05 8.2E-10 69.7 3.0 30 23-52 25-55 (209)
125 cd03238 ABC_UvrA The excision 97.6 4E-05 8.7E-10 72.4 3.1 23 23-45 18-41 (176)
126 COG1117 PstB ABC-type phosphat 97.6 5.4E-05 1.2E-09 70.1 3.7 25 25-49 33-57 (253)
127 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 7E-05 1.5E-09 68.8 4.5 26 23-48 23-49 (144)
128 KOG0976 Rho/Rac1-interacting s 97.6 0.21 4.6E-06 55.8 66.4 9 134-142 24-32 (1265)
129 TIGR03185 DNA_S_dndD DNA sulfu 97.6 0.33 7.2E-06 57.7 48.2 42 1003-1044 487-530 (650)
130 cd03264 ABC_drug_resistance_li 97.6 7.7E-05 1.7E-09 74.5 4.8 27 23-49 23-49 (211)
131 COG3638 ABC-type phosphate/pho 97.6 3.6E-05 7.9E-10 72.7 2.2 44 6-49 4-54 (258)
132 COG4555 NatA ABC-type Na+ tran 97.6 5.3E-05 1.2E-09 69.4 3.0 40 11-51 8-54 (245)
133 KOG0962 DNA repair protein RAD 97.5 0.42 9.1E-06 58.1 78.9 91 948-1047 1063-1153(1294)
134 PF06160 EzrA: Septation ring 97.5 0.3 6.5E-06 56.4 50.6 21 1014-1034 440-460 (560)
135 PF05667 DUF812: Protein of un 97.5 0.28 6E-06 56.0 33.9 11 981-991 560-570 (594)
136 KOG0946 ER-Golgi vesicle-tethe 97.5 0.21 4.6E-06 56.2 30.3 26 461-486 912-937 (970)
137 cd03262 ABC_HisP_GlnQ_permease 97.5 9.7E-05 2.1E-09 74.0 4.8 27 23-49 23-50 (213)
138 COG0410 LivF ABC-type branched 97.5 9.1E-05 2E-09 70.2 3.7 45 6-50 4-54 (237)
139 PF12718 Tropomyosin_1: Tropom 97.5 0.048 1E-06 49.2 20.7 61 870-930 78-138 (143)
140 COG1118 CysA ABC-type sulfate/ 97.5 9.1E-05 2E-09 73.0 3.7 30 25-54 28-57 (345)
141 cd03224 ABC_TM1139_LivF_branch 97.5 0.00011 2.4E-09 74.2 4.4 25 23-47 23-48 (222)
142 PF15070 GOLGA2L5: Putative go 97.5 0.37 7.9E-06 55.3 39.2 55 855-909 164-218 (617)
143 KOG0976 Rho/Rac1-interacting s 97.5 0.31 6.8E-06 54.5 68.6 11 1025-1035 662-672 (1265)
144 PF05667 DUF812: Protein of un 97.4 0.36 7.7E-06 55.1 36.4 23 747-769 396-418 (594)
145 TIGR01978 sufC FeS assembly AT 97.4 0.00012 2.6E-09 75.1 4.6 26 23-48 23-49 (243)
146 KOG0612 Rho-associated, coiled 97.4 0.48 1E-05 56.4 40.2 8 6-13 214-221 (1317)
147 cd03219 ABC_Mj1267_LivG_branch 97.4 0.00013 2.7E-09 74.6 4.5 27 23-49 23-50 (236)
148 cd03261 ABC_Org_Solvent_Resist 97.4 0.00013 2.7E-09 74.4 4.5 27 23-49 23-50 (235)
149 TIGR02315 ABC_phnC phosphonate 97.4 0.00012 2.6E-09 75.1 4.4 27 23-49 25-52 (243)
150 cd03215 ABC_Carb_Monos_II This 97.4 0.0001 2.2E-09 71.4 3.5 27 23-49 23-50 (182)
151 COG1119 ModF ABC-type molybden 97.4 0.00015 3.2E-09 69.4 4.4 42 6-47 32-79 (257)
152 cd03216 ABC_Carb_Monos_I This 97.4 0.00015 3.2E-09 68.5 4.5 26 23-48 23-49 (163)
153 cd03265 ABC_DrrA DrrA is the A 97.4 0.00015 3.2E-09 73.0 4.8 27 23-49 23-50 (220)
154 cd03269 ABC_putative_ATPase Th 97.4 0.00014 3.1E-09 72.5 4.6 27 23-49 23-50 (210)
155 COG4942 Membrane-bound metallo 97.4 0.24 5.3E-06 52.5 32.1 18 672-689 39-56 (420)
156 cd03268 ABC_BcrA_bacitracin_re 97.4 0.00015 3.3E-09 72.2 4.6 27 23-49 23-50 (208)
157 PRK13538 cytochrome c biogenes 97.4 0.00015 3.2E-09 71.8 4.5 27 23-49 24-51 (204)
158 cd03256 ABC_PhnC_transporter A 97.4 0.00015 3.3E-09 74.3 4.7 27 23-49 24-51 (241)
159 cd03230 ABC_DR_subfamily_A Thi 97.4 0.00017 3.7E-09 69.1 4.6 27 23-49 23-50 (173)
160 PF13304 AAA_21: AAA domain; P 97.4 3.7E-05 7.9E-10 82.5 0.0 24 27-50 1-24 (303)
161 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.4 0.00015 3.3E-09 72.9 4.4 27 23-49 27-54 (218)
162 cd03223 ABCD_peroxisomal_ALDP 97.4 0.0002 4.2E-09 67.9 4.9 27 23-49 24-51 (166)
163 PRK11247 ssuB aliphatic sulfon 97.4 0.00015 3.3E-09 74.1 4.4 27 23-49 35-62 (257)
164 COG4477 EzrA Negative regulato 97.4 0.29 6.3E-06 52.7 42.2 124 848-977 351-476 (570)
165 cd03296 ABC_CysA_sulfate_impor 97.4 0.00014 3.1E-09 74.2 4.1 25 25-49 28-52 (239)
166 TIGR02673 FtsE cell division A 97.4 0.00015 3.1E-09 72.8 4.1 27 23-49 25-52 (214)
167 cd03222 ABC_RNaseL_inhibitor T 97.4 0.00012 2.6E-09 69.3 3.2 27 23-49 22-49 (177)
168 cd03259 ABC_Carb_Solutes_like 97.4 0.00018 3.9E-09 72.0 4.7 27 23-49 23-50 (213)
169 TIGR01166 cbiO cobalt transpor 97.4 0.00011 2.5E-09 71.7 3.1 27 23-49 15-42 (190)
170 cd03260 ABC_PstB_phosphate_tra 97.4 0.00018 3.9E-09 72.8 4.6 27 23-49 23-50 (227)
171 COG2884 FtsE Predicted ATPase 97.4 0.00024 5.3E-09 64.6 4.7 51 26-84 29-87 (223)
172 PF00005 ABC_tran: ABC transpo 97.4 0.00012 2.6E-09 67.3 3.0 27 23-49 8-35 (137)
173 cd03293 ABC_NrtD_SsuB_transpor 97.4 0.00018 4E-09 72.3 4.5 27 23-49 27-54 (220)
174 COG4138 BtuD ABC-type cobalami 97.4 0.00016 3.4E-09 64.4 3.3 25 27-51 27-51 (248)
175 PRK13638 cbiO cobalt transport 97.3 0.00019 4.1E-09 74.7 4.7 27 23-49 24-51 (271)
176 TIGR01189 ccmA heme ABC export 97.3 0.00021 4.5E-09 70.5 4.6 27 23-49 23-50 (198)
177 cd03229 ABC_Class3 This class 97.3 0.00021 4.5E-09 68.9 4.6 27 23-49 23-50 (178)
178 cd00267 ABC_ATPase ABC (ATP-bi 97.3 0.00014 3E-09 68.5 3.2 27 23-49 22-49 (157)
179 KOG0995 Centromere-associated 97.3 0.35 7.7E-06 52.6 41.7 99 708-812 264-362 (581)
180 PRK11248 tauB taurine transpor 97.3 0.00019 4.2E-09 73.6 4.4 27 23-49 24-51 (255)
181 PRK14261 phosphate ABC transpo 97.3 0.00017 3.7E-09 74.3 4.1 27 23-49 29-56 (253)
182 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.3 0.00023 4.9E-09 72.7 4.8 27 23-49 26-53 (238)
183 TIGR02211 LolD_lipo_ex lipopro 97.3 0.00019 4.1E-09 72.3 4.2 27 23-49 28-55 (221)
184 cd03291 ABCC_CFTR1 The CFTR su 97.3 0.0002 4.3E-09 74.1 4.3 27 23-49 60-87 (282)
185 PRK13547 hmuV hemin importer A 97.3 0.00017 3.6E-09 74.6 3.8 27 23-49 24-51 (272)
186 COG1136 SalX ABC-type antimicr 97.3 0.00021 4.5E-09 69.0 4.1 29 23-51 28-57 (226)
187 PRK13540 cytochrome c biogenes 97.3 0.00021 4.6E-09 70.5 4.3 25 25-49 27-51 (200)
188 PRK14242 phosphate transporter 97.3 0.00019 4E-09 74.1 4.1 27 23-49 29-56 (253)
189 cd03257 ABC_NikE_OppD_transpor 97.3 0.00022 4.8E-09 72.4 4.5 27 23-49 28-55 (228)
190 COG1127 Ttg2A ABC-type transpo 97.3 0.00022 4.7E-09 67.8 4.0 47 5-51 8-60 (263)
191 cd03217 ABC_FeS_Assembly ABC-t 97.3 0.00025 5.5E-09 69.8 4.8 25 23-47 23-48 (200)
192 cd03283 ABC_MutS-like MutS-lik 97.3 0.00014 3E-09 70.9 2.8 24 23-46 22-46 (199)
193 cd03263 ABC_subfamily_A The AB 97.3 0.00014 3E-09 73.3 3.0 27 23-49 25-52 (220)
194 PF05557 MAD: Mitotic checkpoi 97.3 0.0029 6.3E-08 75.7 14.5 17 903-919 609-625 (722)
195 cd03228 ABCC_MRP_Like The MRP 97.3 0.0003 6.4E-09 67.3 5.0 27 23-49 25-52 (171)
196 PRK13539 cytochrome c biogenes 97.3 0.00022 4.8E-09 70.7 4.2 25 25-49 28-52 (207)
197 cd03218 ABC_YhbG The ABC trans 97.3 0.00026 5.7E-09 72.0 4.8 27 23-49 23-50 (232)
198 cd03226 ABC_cobalt_CbiO_domain 97.3 0.00014 3.1E-09 72.1 2.8 27 23-49 23-50 (205)
199 cd03298 ABC_ThiQ_thiamine_tran 97.3 0.00024 5.1E-09 71.0 4.4 27 23-49 21-48 (211)
200 cd03246 ABCC_Protease_Secretio 97.3 0.00029 6.4E-09 67.4 4.8 27 23-49 25-52 (173)
201 cd03292 ABC_FtsE_transporter F 97.3 0.00026 5.7E-09 70.9 4.7 27 23-49 24-51 (214)
202 cd03300 ABC_PotA_N PotA is an 97.3 0.00027 5.8E-09 71.7 4.8 27 23-49 23-50 (232)
203 PRK14241 phosphate transporter 97.3 0.00022 4.8E-09 73.7 4.2 27 23-49 27-54 (258)
204 COG1131 CcmA ABC-type multidru 97.3 0.00019 4.1E-09 74.7 3.8 28 23-50 28-56 (293)
205 KOG1029 Endocytic adaptor prot 97.3 0.48 1E-05 53.0 40.8 8 167-174 313-320 (1118)
206 PRK13536 nodulation factor exp 97.3 0.00022 4.7E-09 76.0 4.2 45 5-49 41-91 (340)
207 PRK14246 phosphate ABC transpo 97.3 0.0002 4.3E-09 73.6 3.8 26 23-48 33-59 (257)
208 cd03225 ABC_cobalt_CbiO_domain 97.3 0.0002 4.4E-09 71.5 3.7 27 23-49 24-51 (211)
209 cd03295 ABC_OpuCA_Osmoprotecti 97.3 0.00026 5.7E-09 72.4 4.6 27 23-49 24-51 (242)
210 PRK14273 phosphate ABC transpo 97.3 0.00025 5.4E-09 73.2 4.5 27 23-49 30-57 (254)
211 PRK15177 Vi polysaccharide exp 97.3 0.00016 3.6E-09 71.7 3.0 27 23-49 10-37 (213)
212 cd03301 ABC_MalK_N The N-termi 97.3 0.00028 6E-09 70.7 4.7 27 23-49 23-50 (213)
213 PRK14247 phosphate ABC transpo 97.3 0.00023 5.1E-09 73.2 4.2 27 23-49 26-53 (250)
214 PRK10253 iron-enterobactin tra 97.3 0.00023 5E-09 73.8 4.2 27 23-49 30-57 (265)
215 PF05911 DUF869: Plant protein 97.3 0.67 1.5E-05 54.3 65.5 10 533-542 344-353 (769)
216 PRK14267 phosphate ABC transpo 97.3 0.00025 5.4E-09 73.2 4.4 27 23-49 27-54 (253)
217 cd03248 ABCC_TAP TAP, the Tran 97.3 0.00028 6.1E-09 71.4 4.6 25 25-49 40-64 (226)
218 PRK14240 phosphate transporter 97.3 0.00026 5.6E-09 72.9 4.4 27 23-49 26-53 (250)
219 cd03258 ABC_MetN_methionine_tr 97.3 0.00025 5.3E-09 72.2 4.1 27 23-49 28-55 (233)
220 PRK14239 phosphate transporter 97.3 0.00025 5.4E-09 73.2 4.2 25 23-47 28-53 (252)
221 TIGR03410 urea_trans_UrtE urea 97.2 0.0003 6.5E-09 71.4 4.7 27 23-49 23-50 (230)
222 TIGR03864 PQQ_ABC_ATP ABC tran 97.2 0.00022 4.7E-09 72.6 3.7 26 23-48 24-50 (236)
223 PRK13548 hmuV hemin importer A 97.2 0.00023 5.1E-09 73.3 3.9 27 23-49 25-52 (258)
224 cd03231 ABC_CcmA_heme_exporter 97.2 0.00033 7.1E-09 69.1 4.8 27 23-49 23-50 (201)
225 COG3842 PotA ABC-type spermidi 97.2 0.00027 5.9E-09 73.5 4.3 42 5-46 5-52 (352)
226 TIGR00968 3a0106s01 sulfate AB 97.2 0.0003 6.4E-09 71.6 4.6 26 23-48 23-49 (237)
227 PRK10247 putative ABC transpor 97.2 0.00027 5.8E-09 71.2 4.2 27 23-49 30-57 (225)
228 COG0396 sufC Cysteine desulfur 97.2 0.0002 4.3E-09 67.6 2.9 38 26-70 31-69 (251)
229 TIGR03740 galliderm_ABC gallid 97.2 0.00032 6.8E-09 70.8 4.7 27 23-49 23-50 (223)
230 TIGR03005 ectoine_ehuA ectoine 97.2 0.00029 6.3E-09 72.6 4.5 27 23-49 23-50 (252)
231 PRK11831 putative ABC transpor 97.2 0.00021 4.6E-09 74.1 3.5 27 23-49 30-57 (269)
232 PRK09493 glnQ glutamine ABC tr 97.2 0.00028 6.1E-09 72.1 4.3 27 23-49 24-51 (240)
233 PRK03695 vitamin B12-transport 97.2 0.00018 3.9E-09 73.6 2.9 45 1-49 1-46 (248)
234 cd03214 ABC_Iron-Siderophores_ 97.2 0.00032 7E-09 67.7 4.4 25 23-47 22-47 (180)
235 PRK14275 phosphate ABC transpo 97.2 0.00025 5.4E-09 74.2 3.9 26 23-48 62-88 (286)
236 cd03235 ABC_Metallic_Cations A 97.2 0.00025 5.4E-09 70.9 3.8 27 23-49 22-49 (213)
237 PRK14262 phosphate ABC transpo 97.2 0.00028 6E-09 72.7 4.2 27 23-49 26-53 (250)
238 PRK14237 phosphate transporter 97.2 0.00028 6.1E-09 73.2 4.2 27 23-49 43-70 (267)
239 PRK09580 sufC cysteine desulfu 97.2 0.00031 6.7E-09 72.4 4.5 26 23-48 24-50 (248)
240 PRK11264 putative amino-acid A 97.2 0.00027 5.8E-09 72.9 4.0 27 23-49 26-53 (250)
241 cd03266 ABC_NatA_sodium_export 97.2 0.00027 5.8E-09 71.1 3.9 26 23-48 28-54 (218)
242 CHL00131 ycf16 sulfate ABC tra 97.2 0.0003 6.5E-09 72.6 4.3 25 23-47 30-55 (252)
243 TIGR00960 3a0501s02 Type II (G 97.2 0.00031 6.7E-09 70.5 4.3 27 23-49 26-53 (216)
244 cd03254 ABCC_Glucan_exporter_l 97.2 0.00033 7.2E-09 71.0 4.6 27 23-49 26-53 (229)
245 COG3840 ThiQ ABC-type thiamine 97.2 0.00022 4.8E-09 64.2 2.7 27 25-51 25-51 (231)
246 PRK10575 iron-hydroxamate tran 97.2 0.00026 5.7E-09 73.3 3.8 27 23-49 34-61 (265)
247 TIGR00972 3a0107s01c2 phosphat 97.2 0.00033 7.2E-09 71.9 4.5 27 23-49 24-51 (247)
248 cd03252 ABCC_Hemolysin The ABC 97.2 0.00037 8E-09 71.1 4.8 27 23-49 25-52 (237)
249 TIGR01288 nodI ATP-binding ABC 97.2 0.00031 6.8E-09 74.3 4.2 25 23-47 27-52 (303)
250 PRK09544 znuC high-affinity zi 97.2 0.00028 6.1E-09 72.1 3.7 25 25-49 30-54 (251)
251 PRK14250 phosphate ABC transpo 97.2 0.00031 6.7E-09 71.7 4.1 27 23-49 26-53 (241)
252 COG1125 OpuBA ABC-type proline 97.2 0.00029 6.2E-09 67.4 3.4 44 7-50 3-52 (309)
253 PRK14255 phosphate ABC transpo 97.2 0.00034 7.4E-09 72.1 4.4 26 23-48 28-54 (252)
254 PRK13648 cbiO cobalt transport 97.2 0.0003 6.6E-09 73.1 4.0 27 23-49 32-59 (269)
255 PRK13644 cbiO cobalt transport 97.2 0.0003 6.5E-09 73.1 4.0 27 23-49 25-52 (274)
256 PRK14238 phosphate transporter 97.2 0.00033 7.1E-09 72.8 4.2 27 23-49 47-74 (271)
257 PRK11231 fecE iron-dicitrate t 97.2 0.00032 6.9E-09 72.4 4.0 27 23-49 25-52 (255)
258 PRK14274 phosphate ABC transpo 97.2 0.00035 7.6E-09 72.3 4.3 27 23-49 35-62 (259)
259 PRK10744 pstB phosphate transp 97.2 0.00031 6.8E-09 72.6 3.9 27 23-49 36-63 (260)
260 TIGR02982 heterocyst_DevA ABC 97.2 0.00038 8.3E-09 69.9 4.4 26 23-48 28-54 (220)
261 PRK11629 lolD lipoprotein tran 97.2 0.00022 4.9E-09 72.4 2.8 27 23-49 32-59 (233)
262 PRK14248 phosphate ABC transpo 97.2 0.00033 7.2E-09 72.8 3.9 27 23-49 44-71 (268)
263 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.2 0.00016 3.5E-09 72.6 1.5 25 23-47 45-70 (224)
264 TIGR03608 L_ocin_972_ABC putat 97.2 0.00025 5.4E-09 70.6 2.9 27 23-49 21-48 (206)
265 COG4619 ABC-type uncharacteriz 97.1 0.00032 7E-09 62.1 3.1 26 26-51 30-55 (223)
266 PRK14235 phosphate transporter 97.1 0.00036 7.8E-09 72.4 4.1 27 23-49 42-69 (267)
267 PRK14243 phosphate transporter 97.1 0.00037 8E-09 72.1 4.2 27 23-49 33-60 (264)
268 cd03243 ABC_MutS_homologs The 97.1 0.00027 5.9E-09 69.7 3.0 24 23-46 26-50 (202)
269 COG4152 ABC-type uncharacteriz 97.1 0.00029 6.3E-09 66.8 3.0 44 6-49 3-52 (300)
270 cd03233 ABC_PDR_domain1 The pl 97.1 0.00026 5.7E-09 69.7 2.9 27 23-49 30-57 (202)
271 cd03251 ABCC_MsbA MsbA is an e 97.1 0.00046 9.9E-09 70.3 4.8 27 23-49 25-52 (234)
272 cd03232 ABC_PDR_domain2 The pl 97.1 0.00025 5.5E-09 69.2 2.7 24 23-46 30-54 (192)
273 PRK14245 phosphate ABC transpo 97.1 0.00036 7.9E-09 71.7 4.0 25 25-49 29-53 (250)
274 PRK09984 phosphonate/organopho 97.1 0.00038 8.3E-09 72.1 4.2 27 23-49 27-54 (262)
275 PRK14244 phosphate ABC transpo 97.1 0.0004 8.7E-09 71.5 4.3 27 23-49 28-55 (251)
276 PRK14258 phosphate ABC transpo 97.1 0.00039 8.5E-09 71.9 4.2 27 23-49 30-57 (261)
277 TIGR03522 GldA_ABC_ATP gliding 97.1 0.00036 7.7E-09 73.7 3.9 26 23-48 25-51 (301)
278 cd03294 ABC_Pro_Gly_Bertaine T 97.1 0.00028 6E-09 73.2 3.0 27 23-49 47-74 (269)
279 TIGR03411 urea_trans_UrtD urea 97.1 0.00036 7.7E-09 71.5 3.8 27 23-49 25-52 (242)
280 PRK15056 manganese/iron transp 97.1 0.00038 8.2E-09 72.4 4.1 27 23-49 30-57 (272)
281 PRK14268 phosphate ABC transpo 97.1 0.00039 8.4E-09 71.8 4.1 26 23-48 35-61 (258)
282 PRK14259 phosphate ABC transpo 97.1 0.00035 7.6E-09 72.5 3.8 26 23-48 36-62 (269)
283 PRK10895 lipopolysaccharide AB 97.1 0.0004 8.8E-09 71.0 4.2 25 25-49 29-53 (241)
284 PRK14253 phosphate ABC transpo 97.1 0.00044 9.5E-09 71.2 4.4 27 23-49 26-53 (249)
285 PRK13543 cytochrome c biogenes 97.1 0.0004 8.7E-09 69.3 4.0 27 23-49 34-61 (214)
286 PRK13537 nodulation ABC transp 97.1 0.00042 9.1E-09 73.1 4.3 46 4-49 6-57 (306)
287 PRK11300 livG leucine/isoleuci 97.1 0.00038 8.2E-09 72.0 3.9 25 25-49 31-55 (255)
288 TIGR01184 ntrCD nitrate transp 97.1 0.00031 6.6E-09 71.0 3.1 27 23-49 8-35 (230)
289 PRK10584 putative ABC transpor 97.1 0.0003 6.6E-09 71.2 3.1 25 25-49 36-60 (228)
290 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00031 6.7E-09 58.9 2.5 24 23-46 12-36 (107)
291 TIGR02770 nickel_nikD nickel i 97.1 0.00031 6.8E-09 71.1 3.1 27 23-49 9-36 (230)
292 PRK10771 thiQ thiamine transpo 97.1 0.00049 1.1E-08 69.8 4.5 27 23-49 22-49 (232)
293 cd03290 ABCC_SUR1_N The SUR do 97.1 0.00031 6.8E-09 70.5 3.0 27 23-49 24-51 (218)
294 PRK09536 btuD corrinoid ABC tr 97.1 0.00036 7.9E-09 75.7 3.7 25 25-49 29-53 (402)
295 cd03247 ABCC_cytochrome_bd The 97.1 0.00055 1.2E-08 66.0 4.6 27 23-49 25-52 (178)
296 PRK10908 cell division protein 97.1 0.00042 9.2E-09 69.8 4.0 27 23-49 25-52 (222)
297 PRK14260 phosphate ABC transpo 97.1 0.00048 1E-08 71.2 4.5 27 23-49 30-57 (259)
298 PRK14256 phosphate ABC transpo 97.1 0.00048 1E-08 71.0 4.4 27 23-49 27-54 (252)
299 PRK13632 cbiO cobalt transport 97.1 0.00045 9.8E-09 71.8 4.2 27 23-49 32-59 (271)
300 TIGR02323 CP_lyasePhnK phospho 97.1 0.00046 1E-08 71.2 4.3 27 23-49 26-53 (253)
301 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.00034 7.4E-09 68.8 3.1 24 23-46 24-49 (200)
302 TIGR01188 drrA daunorubicin re 97.1 0.0003 6.6E-09 74.3 2.9 27 23-49 16-43 (302)
303 PRK13639 cbiO cobalt transport 97.1 0.00047 1E-08 71.8 4.2 27 23-49 25-52 (275)
304 PRK15112 antimicrobial peptide 97.1 0.00033 7.1E-09 72.7 3.1 27 23-49 36-63 (267)
305 PRK14236 phosphate transporter 97.1 0.00046 9.9E-09 71.8 4.1 27 23-49 48-75 (272)
306 PRK13647 cbiO cobalt transport 97.1 0.00048 1E-08 71.6 4.2 27 23-49 28-55 (274)
307 cd03369 ABCC_NFT1 Domain 2 of 97.1 0.00059 1.3E-08 67.9 4.7 27 23-49 31-58 (207)
308 cd03245 ABCC_bacteriocin_expor 97.1 0.00056 1.2E-08 68.9 4.6 25 25-49 30-54 (220)
309 cd03213 ABCG_EPDR ABCG transpo 97.1 0.00053 1.2E-08 67.0 4.3 24 26-49 36-59 (194)
310 PRK14265 phosphate ABC transpo 97.1 0.00049 1.1E-08 71.6 4.2 27 23-49 43-70 (274)
311 PRK14266 phosphate ABC transpo 97.1 0.00048 1E-08 70.9 4.1 28 23-50 26-54 (250)
312 cd03253 ABCC_ATM1_transporter 97.1 0.00058 1.3E-08 69.7 4.7 27 23-49 24-51 (236)
313 PRK14251 phosphate ABC transpo 97.1 0.00051 1.1E-08 70.8 4.3 27 23-49 27-54 (251)
314 KOG0995 Centromere-associated 97.1 0.68 1.5E-05 50.6 43.7 19 671-689 235-253 (581)
315 PRK11614 livF leucine/isoleuci 97.1 0.0005 1.1E-08 70.1 4.1 27 23-49 28-55 (237)
316 PF09730 BicD: Microtubule-ass 97.1 0.97 2.1E-05 52.3 74.0 33 787-819 666-698 (717)
317 PRK11000 maltose/maltodextrin 97.1 0.00041 9E-09 75.1 3.7 24 25-48 29-52 (369)
318 cd03244 ABCC_MRP_domain2 Domai 97.1 0.00062 1.4E-08 68.6 4.8 27 23-49 27-54 (221)
319 PRK14249 phosphate ABC transpo 97.1 0.00057 1.2E-08 70.3 4.6 27 23-49 27-54 (251)
320 TIGR03265 PhnT2 putative 2-ami 97.1 0.00049 1.1E-08 73.8 4.1 27 23-49 27-54 (353)
321 PRK11124 artP arginine transpo 97.1 0.00055 1.2E-08 70.1 4.4 26 23-48 25-51 (242)
322 PRK14252 phosphate ABC transpo 97.1 0.00052 1.1E-08 71.2 4.2 26 23-48 39-65 (265)
323 cd03299 ABC_ModC_like Archeal 97.0 0.00059 1.3E-08 69.3 4.5 27 23-49 22-49 (235)
324 KOG0612 Rho-associated, coiled 97.0 1.2 2.7E-05 53.2 42.1 10 559-568 310-319 (1317)
325 KOG0971 Microtubule-associated 97.0 0.94 2E-05 51.9 77.0 38 456-493 507-544 (1243)
326 cd03267 ABC_NatA_like Similar 97.0 0.00037 8E-09 70.8 2.9 27 23-49 44-71 (236)
327 PRK10636 putative ABC transpor 97.0 0.00046 9.9E-09 81.1 4.1 25 23-47 24-49 (638)
328 PRK14254 phosphate ABC transpo 97.0 0.00053 1.2E-08 71.6 4.1 27 23-49 62-89 (285)
329 PRK14271 phosphate ABC transpo 97.0 0.00048 1E-08 71.6 3.7 26 23-48 44-70 (276)
330 PRK13649 cbiO cobalt transport 97.0 0.00035 7.7E-09 73.2 2.8 27 23-49 30-57 (280)
331 PRK14270 phosphate ABC transpo 97.0 0.0006 1.3E-08 70.2 4.4 27 23-49 27-54 (251)
332 PRK13645 cbiO cobalt transport 97.0 0.00034 7.4E-09 73.5 2.7 27 23-49 34-61 (289)
333 PRK13637 cbiO cobalt transport 97.0 0.00035 7.5E-09 73.2 2.6 27 23-49 30-57 (287)
334 PRK14272 phosphate ABC transpo 97.0 0.00068 1.5E-08 70.0 4.7 45 5-49 4-54 (252)
335 TIGR02324 CP_lyasePhnL phospho 97.0 0.00041 9E-09 70.0 3.0 25 25-49 34-58 (224)
336 PRK14264 phosphate ABC transpo 97.0 0.00058 1.3E-08 72.2 4.2 25 25-49 71-95 (305)
337 cd03250 ABCC_MRP_domain1 Domai 97.0 0.00042 9E-09 68.7 2.9 27 23-49 28-55 (204)
338 TIGR03873 F420-0_ABC_ATP propo 97.0 0.00065 1.4E-08 70.1 4.4 25 25-49 27-51 (256)
339 PRK11650 ugpC glycerol-3-phosp 97.0 0.00059 1.3E-08 73.3 4.1 27 23-49 27-54 (356)
340 PRK11147 ABC transporter ATPas 97.0 0.00057 1.2E-08 80.6 4.3 25 23-47 26-51 (635)
341 PRK13640 cbiO cobalt transport 97.0 0.00041 8.8E-09 72.5 2.8 27 23-49 30-57 (282)
342 PRK09452 potA putrescine/sperm 97.0 0.00054 1.2E-08 73.9 3.8 27 23-49 37-64 (375)
343 PRK11432 fbpC ferric transport 97.0 0.00064 1.4E-08 72.8 4.2 25 23-47 29-54 (351)
344 PRK13541 cytochrome c biogenes 97.0 0.0005 1.1E-08 67.5 3.2 27 23-49 23-50 (195)
345 PRK10851 sulfate/thiosulfate t 97.0 0.00058 1.3E-08 73.3 3.9 25 25-49 28-52 (353)
346 cd03236 ABC_RNaseL_inhibitor_d 97.0 0.00052 1.1E-08 70.0 3.3 27 23-49 23-50 (255)
347 TIGR03258 PhnT 2-aminoethylpho 97.0 0.00061 1.3E-08 73.2 4.0 23 25-47 31-53 (362)
348 PRK14263 phosphate ABC transpo 97.0 0.00064 1.4E-08 70.1 4.0 27 23-49 31-58 (261)
349 PRK13633 cobalt transporter AT 97.0 0.00045 9.7E-09 72.2 2.9 27 23-49 33-60 (280)
350 PRK11153 metN DL-methionine tr 97.0 0.00061 1.3E-08 73.2 4.0 26 23-48 28-54 (343)
351 PRK13641 cbiO cobalt transport 97.0 0.00046 1E-08 72.3 3.0 27 23-49 30-57 (287)
352 TIGR02769 nickel_nikE nickel i 97.0 0.00073 1.6E-08 70.1 4.4 27 23-49 34-61 (265)
353 PRK10418 nikD nickel transport 97.0 0.00067 1.5E-08 69.9 4.1 27 23-49 26-53 (254)
354 PRK13546 teichoic acids export 97.0 0.00047 1E-08 70.9 2.9 24 26-49 51-74 (264)
355 PRK13650 cbiO cobalt transport 97.0 0.00066 1.4E-08 70.8 4.0 27 23-49 30-57 (279)
356 PRK13651 cobalt transporter AT 97.0 0.00049 1.1E-08 72.4 2.9 27 23-49 30-57 (305)
357 PRK13646 cbiO cobalt transport 96.9 0.00047 1E-08 72.2 2.8 27 23-49 30-57 (286)
358 PRK14269 phosphate ABC transpo 96.9 0.00059 1.3E-08 69.9 3.5 27 23-49 25-52 (246)
359 PRK13636 cbiO cobalt transport 96.9 0.00074 1.6E-08 70.6 4.2 27 23-49 29-56 (283)
360 cd03237 ABC_RNaseL_inhibitor_d 96.9 0.00057 1.2E-08 69.4 3.2 25 25-49 25-49 (246)
361 PRK10419 nikE nickel transport 96.9 0.00053 1.2E-08 71.1 3.0 26 23-48 35-61 (268)
362 PRK13635 cbiO cobalt transport 96.9 0.00075 1.6E-08 70.3 4.1 27 23-49 30-57 (279)
363 PRK10762 D-ribose transporter 96.9 0.00065 1.4E-08 78.0 3.9 45 6-50 5-55 (501)
364 TIGR01277 thiQ thiamine ABC tr 96.9 0.0009 1.9E-08 66.8 4.4 25 25-49 24-48 (213)
365 PRK09039 hypothetical protein; 96.9 0.11 2.4E-06 55.2 20.0 9 398-406 173-181 (343)
366 cd03289 ABCC_CFTR2 The CFTR su 96.9 0.00099 2.1E-08 68.7 4.6 27 23-49 27-54 (275)
367 cd03234 ABCG_White The White s 96.9 0.00063 1.4E-08 68.7 3.2 27 23-49 30-57 (226)
368 PF13514 AAA_27: AAA domain 96.9 2.4 5.2E-05 54.2 91.2 64 974-1044 939-1002(1111)
369 PRK13652 cbiO cobalt transport 96.9 0.00056 1.2E-08 71.3 2.8 27 23-49 27-54 (277)
370 PRK11281 hypothetical protein; 96.9 2 4.4E-05 53.2 41.3 36 733-768 144-179 (1113)
371 PRK11701 phnK phosphonate C-P 96.9 0.00091 2E-08 69.2 4.3 27 23-49 29-56 (258)
372 PRK10938 putative molybdenum t 96.9 0.00086 1.9E-08 76.9 4.5 25 25-49 29-53 (490)
373 PRK10619 histidine/lysine/argi 96.9 0.00076 1.7E-08 69.7 3.7 27 23-49 28-55 (257)
374 KOG0064 Peroxisomal long-chain 96.9 0.00063 1.4E-08 72.0 2.9 23 23-45 505-528 (728)
375 PRK15439 autoinducer 2 ABC tra 96.9 0.00077 1.7E-08 77.4 3.8 27 23-49 34-61 (510)
376 PRK13642 cbiO cobalt transport 96.9 0.00097 2.1E-08 69.5 4.3 27 23-49 30-57 (277)
377 KOG0980 Actin-binding protein 96.9 1.4 3E-05 50.7 34.4 252 645-911 307-561 (980)
378 PRK10636 putative ABC transpor 96.9 0.00082 1.8E-08 79.0 4.0 24 26-49 339-362 (638)
379 PRK13634 cbiO cobalt transport 96.8 0.00094 2E-08 70.1 4.1 27 23-49 30-57 (290)
380 TIGR03719 ABC_ABC_ChvD ATP-bin 96.8 0.00095 2.1E-08 77.5 4.5 26 23-48 28-54 (552)
381 PRK15064 ABC transporter ATP-b 96.8 0.0009 2E-08 77.5 4.2 27 23-49 24-51 (530)
382 COG4148 ModC ABC-type molybdat 96.8 0.0025 5.5E-08 62.0 6.4 92 24-131 23-119 (352)
383 PRK11147 ABC transporter ATPas 96.8 0.00087 1.9E-08 79.1 3.9 27 23-49 342-369 (635)
384 PRK10938 putative molybdenum t 96.8 0.00096 2.1E-08 76.5 4.0 23 25-47 286-308 (490)
385 PRK09700 D-allose transporter 96.8 0.00071 1.5E-08 77.9 2.9 27 23-49 286-313 (510)
386 PRK13631 cbiO cobalt transport 96.8 0.00078 1.7E-08 71.4 2.9 27 23-49 49-76 (320)
387 PRK11607 potG putrescine trans 96.8 0.00098 2.1E-08 72.1 3.7 25 25-49 45-69 (377)
388 KOG0971 Microtubule-associated 96.8 1.5 3.3E-05 50.3 68.3 13 951-963 1096-1108(1243)
389 cd03297 ABC_ModC_molybdenum_tr 96.8 0.00099 2.2E-08 66.6 3.5 27 23-49 21-47 (214)
390 PRK10078 ribose 1,5-bisphospho 96.8 0.00086 1.9E-08 65.1 2.9 25 26-50 3-27 (186)
391 TIGR01186 proV glycine betaine 96.8 0.00086 1.9E-08 71.8 3.0 25 25-49 19-43 (363)
392 PRK15064 ABC transporter ATP-b 96.8 0.0011 2.4E-08 76.6 4.2 44 6-49 320-369 (530)
393 COG4161 ArtP ABC-type arginine 96.7 0.0017 3.7E-08 57.0 4.1 44 5-49 2-52 (242)
394 PRK15093 antimicrobial peptide 96.7 0.0012 2.7E-08 70.4 3.9 27 23-49 30-57 (330)
395 TIGR02633 xylG D-xylose ABC tr 96.7 0.0013 2.8E-08 75.7 4.3 27 23-49 24-51 (500)
396 COG4167 SapF ABC-type antimicr 96.7 0.001 2.2E-08 59.8 2.6 27 25-51 38-65 (267)
397 PRK09700 D-allose transporter 96.7 0.0013 2.7E-08 75.9 4.1 27 23-49 28-55 (510)
398 PF08317 Spc7: Spc7 kinetochor 96.7 1.1 2.4E-05 47.6 31.6 63 165-227 70-144 (325)
399 TIGR03771 anch_rpt_ABC anchore 96.7 0.0011 2.4E-08 66.7 3.0 27 23-49 3-30 (223)
400 TIGR03269 met_CoM_red_A2 methy 96.7 0.0016 3.6E-08 75.2 4.8 27 23-49 23-50 (520)
401 COG4477 EzrA Negative regulato 96.7 1.3 2.8E-05 48.0 41.6 35 173-207 100-134 (570)
402 PRK11819 putative ABC transpor 96.7 0.0013 2.8E-08 76.4 3.9 27 23-49 347-374 (556)
403 PRK13643 cbiO cobalt transport 96.7 0.001 2.2E-08 69.7 2.7 24 26-49 33-56 (288)
404 PRK15439 autoinducer 2 ABC tra 96.7 0.0014 3.1E-08 75.2 4.1 42 6-49 269-313 (510)
405 TIGR03415 ABC_choXWV_ATP choli 96.7 0.001 2.2E-08 71.6 2.6 25 25-49 50-74 (382)
406 TIGR03719 ABC_ABC_ChvD ATP-bin 96.6 0.0016 3.4E-08 75.8 4.2 26 23-48 345-371 (552)
407 cd03288 ABCC_SUR2 The SUR doma 96.6 0.0011 2.4E-08 68.3 2.7 27 23-49 44-71 (257)
408 cd01130 VirB11-like_ATPase Typ 96.6 0.0015 3.3E-08 63.3 3.3 25 25-49 25-49 (186)
409 PRK11022 dppD dipeptide transp 96.6 0.0015 3.3E-08 69.5 3.5 27 23-49 30-57 (326)
410 PRK14257 phosphate ABC transpo 96.6 0.0012 2.6E-08 70.1 2.8 24 23-46 105-129 (329)
411 PRK13545 tagH teichoic acids e 96.6 0.0019 4E-08 71.2 4.2 26 23-48 47-73 (549)
412 PRK11288 araG L-arabinose tran 96.6 0.0015 3.3E-08 75.0 3.7 27 23-49 27-54 (501)
413 PRK11819 putative ABC transpor 96.6 0.002 4.3E-08 74.9 4.7 27 23-49 30-57 (556)
414 PRK13549 xylose transporter AT 96.6 0.0017 3.6E-08 74.8 4.0 27 23-49 28-55 (506)
415 PF08317 Spc7: Spc7 kinetochor 96.6 1.4 3E-05 47.0 29.6 12 121-132 16-27 (325)
416 cd01131 PilT Pilus retraction 96.6 0.0017 3.7E-08 63.5 3.3 25 25-49 1-25 (198)
417 TIGR02322 phosphon_PhnN phosph 96.6 0.0017 3.8E-08 62.8 3.4 26 26-51 2-27 (179)
418 cd03281 ABC_MSH5_euk MutS5 hom 96.5 0.0015 3.2E-08 64.6 2.7 21 26-46 30-50 (213)
419 KOG4673 Transcription factor T 96.5 1.8 4E-05 47.9 68.5 13 948-960 933-945 (961)
420 COG5185 HEC1 Protein involved 96.5 1.4 3E-05 46.4 40.0 59 711-769 303-361 (622)
421 TIGR00554 panK_bact pantothena 96.5 0.0018 4E-08 66.3 3.3 27 24-50 61-87 (290)
422 PRK10982 galactose/methyl gala 96.5 0.0014 3E-08 75.2 2.6 27 23-49 271-298 (491)
423 PRK09473 oppD oligopeptide tra 96.5 0.0018 3.9E-08 69.0 3.3 27 23-49 39-66 (330)
424 cd03270 ABC_UvrA_I The excisio 96.5 0.0021 4.5E-08 64.5 3.6 21 25-45 21-42 (226)
425 PRK09825 idnK D-gluconate kina 96.5 0.0023 4.9E-08 61.0 3.6 27 25-51 3-29 (176)
426 TIGR02314 ABC_MetN D-methionin 96.5 0.0017 3.7E-08 69.1 3.1 25 25-49 31-55 (343)
427 PLN03073 ABC transporter F fam 96.5 0.002 4.4E-08 76.0 4.0 43 4-46 176-224 (718)
428 TIGR02142 modC_ABC molybdenum 96.5 0.0017 3.7E-08 70.2 3.1 27 23-49 20-47 (354)
429 PF05622 HOOK: HOOK protein; 96.5 0.0015 3.1E-08 78.0 2.6 14 37-50 4-18 (713)
430 COG4598 HisP ABC-type histidin 96.5 0.0024 5.2E-08 57.4 3.3 29 25-53 32-60 (256)
431 PLN03073 ABC transporter F fam 96.5 0.0024 5.2E-08 75.4 4.3 27 23-49 532-559 (718)
432 COG4525 TauB ABC-type taurine 96.4 0.0028 6E-08 58.1 3.5 27 25-51 31-57 (259)
433 COG3845 ABC-type uncharacteriz 96.4 0.0038 8.2E-08 66.5 5.1 25 25-49 30-54 (501)
434 PF05483 SCP-1: Synaptonemal c 96.4 2.2 4.7E-05 47.7 88.0 15 157-171 82-96 (786)
435 COG0488 Uup ATPase components 96.4 0.0029 6.3E-08 70.9 4.5 28 25-52 348-375 (530)
436 cd02025 PanK Pantothenate kina 96.4 0.0022 4.7E-08 63.7 3.2 24 27-50 1-24 (220)
437 TIGR02633 xylG D-xylose ABC tr 96.4 0.0027 5.8E-08 73.1 4.3 25 25-49 286-310 (500)
438 PRK10762 D-ribose transporter 96.4 0.0025 5.5E-08 73.2 4.1 27 23-49 275-302 (501)
439 COG1101 PhnK ABC-type uncharac 96.4 0.0022 4.7E-08 59.9 2.7 26 24-49 31-56 (263)
440 PRK11144 modC molybdate transp 96.4 0.0022 4.8E-08 69.2 3.3 24 25-48 24-47 (352)
441 PRK13409 putative ATPase RIL; 96.4 0.0022 4.8E-08 74.1 3.4 29 23-51 96-125 (590)
442 PRK10070 glycine betaine trans 96.4 0.002 4.3E-08 70.0 2.8 24 26-49 55-78 (400)
443 TIGR03269 met_CoM_red_A2 methy 96.4 0.002 4.4E-08 74.4 2.8 27 23-49 307-334 (520)
444 TIGR00235 udk uridine kinase. 96.4 0.0026 5.6E-08 63.0 3.2 26 25-50 6-31 (207)
445 COG4586 ABC-type uncharacteriz 96.3 0.0018 3.9E-08 62.9 1.9 24 26-49 51-74 (325)
446 TIGR02524 dot_icm_DotB Dot/Icm 96.3 0.0024 5.2E-08 68.1 3.0 25 25-49 134-158 (358)
447 COG0488 Uup ATPase components 96.3 0.0035 7.5E-08 70.3 4.3 44 6-49 4-53 (530)
448 PRK11288 araG L-arabinose tran 96.3 0.0023 5E-08 73.5 2.9 24 26-49 280-303 (501)
449 PRK10982 galactose/methyl gala 96.3 0.0029 6.3E-08 72.5 3.7 27 23-49 21-48 (491)
450 KOG0062 ATPase component of AB 96.3 0.0031 6.7E-08 67.1 3.5 41 5-47 80-128 (582)
451 PRK13549 xylose transporter AT 96.3 0.0025 5.4E-08 73.3 3.1 27 23-49 285-312 (506)
452 PF03193 DUF258: Protein of un 96.3 0.0027 5.9E-08 58.0 2.7 25 23-47 33-57 (161)
453 PRK15134 microcin C ABC transp 96.3 0.0023 5E-08 74.1 2.8 25 25-49 35-59 (529)
454 PF15619 Lebercilin: Ciliary p 96.3 1.1 2.5E-05 42.8 26.6 43 721-763 65-107 (194)
455 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.3 0.81 1.8E-05 41.0 19.7 68 695-762 23-90 (132)
456 PRK15079 oligopeptide ABC tran 96.2 0.0027 5.8E-08 67.6 2.7 24 26-49 48-71 (331)
457 TIGR00634 recN DNA repair prot 96.2 3.5 7.7E-05 48.1 32.2 12 1075-1086 421-433 (563)
458 PRK14738 gmk guanylate kinase; 96.2 0.0035 7.5E-08 61.8 3.3 25 22-46 10-34 (206)
459 cd02023 UMPK Uridine monophosp 96.2 0.0037 8E-08 61.6 3.3 24 27-50 1-24 (198)
460 PF04849 HAP1_N: HAP1 N-termin 96.2 1.7 3.8E-05 44.1 27.7 10 150-159 35-44 (306)
461 TIGR01069 mutS2 MutS2 family p 96.2 0.75 1.6E-05 55.2 22.7 23 26-48 323-345 (771)
462 KOG0057 Mitochondrial Fe/S clu 96.2 0.003 6.6E-08 67.9 2.7 24 26-49 379-402 (591)
463 COG1137 YhbG ABC-type (unclass 96.1 0.0014 3.1E-08 60.3 0.1 39 6-44 5-49 (243)
464 PRK15134 microcin C ABC transp 96.1 0.0032 6.9E-08 72.9 3.0 25 25-49 312-336 (529)
465 TIGR03263 guanyl_kin guanylate 96.1 0.0038 8.3E-08 60.5 3.1 25 26-50 2-26 (180)
466 smart00534 MUTSac ATPase domai 96.1 0.0041 8.8E-08 60.2 3.2 21 27-47 1-21 (185)
467 PF05622 HOOK: HOOK protein; 96.1 0.0014 3E-08 78.1 0.0 16 151-166 107-122 (713)
468 COG1134 TagH ABC-type polysacc 96.1 0.0036 7.8E-08 60.3 2.7 26 26-51 54-79 (249)
469 cd03284 ABC_MutS1 MutS1 homolo 96.1 0.0037 7.9E-08 62.0 2.9 22 25-46 30-51 (216)
470 PRK13409 putative ATPase RIL; 96.1 0.0041 8.8E-08 72.0 3.7 24 26-49 366-389 (590)
471 KOG4643 Uncharacterized coiled 96.1 4.1 8.9E-05 47.8 65.2 45 331-375 180-224 (1195)
472 COG4107 PhnK ABC-type phosphon 96.1 0.0051 1.1E-07 54.9 3.3 27 25-51 32-58 (258)
473 smart00382 AAA ATPases associa 96.1 0.0043 9.4E-08 57.8 3.2 27 25-51 2-28 (148)
474 PLN03211 ABC transporter G-25; 96.1 0.0036 7.8E-08 73.5 3.1 26 23-48 91-117 (659)
475 cd00071 GMPK Guanosine monopho 96.1 0.0043 9.3E-08 56.3 2.9 23 27-49 1-23 (137)
476 COG2805 PilT Tfp pilus assembl 96.1 0.0043 9.3E-08 61.3 3.0 27 24-50 124-150 (353)
477 COG1129 MglA ABC-type sugar tr 96.0 0.0048 1E-07 67.2 3.5 45 6-50 9-59 (500)
478 PRK11308 dppF dipeptide transp 96.0 0.0042 9.2E-08 66.1 3.0 25 25-49 41-65 (327)
479 PRK11174 cysteine/glutathione 96.0 0.0056 1.2E-07 72.3 4.1 45 5-49 349-400 (588)
480 PRK09270 nucleoside triphospha 96.0 0.0051 1.1E-07 62.0 3.3 27 25-51 33-59 (229)
481 PF13245 AAA_19: Part of AAA d 96.0 0.0077 1.7E-07 47.5 3.5 25 25-49 10-35 (76)
482 COG4185 Uncharacterized protei 96.0 0.0019 4.2E-08 56.9 0.1 25 25-49 2-26 (187)
483 PRK10261 glutathione transport 96.0 0.0041 8.9E-08 73.2 2.8 34 10-45 336-370 (623)
484 PRK10416 signal recognition pa 96.0 0.0054 1.2E-07 64.4 3.4 26 24-49 113-138 (318)
485 PRK00409 recombination and DNA 96.0 1.2 2.7E-05 53.5 23.3 231 12-276 314-625 (782)
486 cd03282 ABC_MSH4_euk MutS4 hom 96.0 0.0059 1.3E-07 59.6 3.4 25 24-48 28-52 (204)
487 cd03271 ABC_UvrA_II The excisi 95.9 0.0072 1.6E-07 61.3 4.0 42 6-47 1-43 (261)
488 COG0194 Gmk Guanylate kinase [ 95.9 0.0057 1.2E-07 56.3 2.9 22 25-46 4-25 (191)
489 KOG0963 Transcription factor/C 95.9 3.8 8.2E-05 45.6 40.6 316 154-492 91-436 (629)
490 COG4988 CydD ABC-type transpor 95.9 0.0053 1.1E-07 67.2 3.1 23 23-45 345-367 (559)
491 COG4181 Predicted ABC-type tra 95.9 0.0044 9.5E-08 55.4 2.0 15 28-42 39-53 (228)
492 COG4136 ABC-type uncharacteriz 95.9 0.0076 1.6E-07 52.5 3.3 28 24-51 27-54 (213)
493 PRK11176 lipid transporter ATP 95.9 0.0084 1.8E-07 70.8 4.8 55 1-57 342-401 (582)
494 cd02019 NK Nucleoside/nucleoti 95.9 0.0085 1.8E-07 46.5 3.3 23 27-49 1-23 (69)
495 PF14915 CCDC144C: CCDC144C pr 95.9 2.3 4.9E-05 42.6 40.7 285 196-489 4-300 (305)
496 TIGR03238 dnd_assoc_3 dnd syst 95.8 0.0052 1.1E-07 66.2 2.6 20 24-43 31-50 (504)
497 PRK05480 uridine/cytidine kina 95.8 0.0065 1.4E-07 60.5 3.2 26 24-49 5-30 (209)
498 KOG0927 Predicted transporter 95.8 0.0064 1.4E-07 65.3 3.2 51 5-56 82-132 (614)
499 KOG0980 Actin-binding protein 95.8 5.1 0.00011 46.4 42.0 354 194-570 329-693 (980)
500 PRK11889 flhF flagellar biosyn 95.8 0.0072 1.6E-07 63.5 3.5 26 24-49 240-265 (436)
No 1
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.2e-117 Score=939.25 Aligned_cols=1085 Identities=47% Similarity=0.736 Sum_probs=981.3
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|||+.|.|.||+||.+.++++||+|..|+|||.|||||||++.||+|||.+.+.+++.....++||.|+++.+..|+|+|
T Consensus 1 MyIk~ViI~GFrSYrd~tvv~~fSph~NvIVGrNGSGKSNFF~AIrFVLSDey~hLk~E~R~gLlHEGsG~~V~sA~VEI 80 (1200)
T KOG0964|consen 1 MYIKQVIIKGFRSYRDETVVDPFSPHHNVIVGRNGSGKSNFFHAIRFVLSDEYSHLKREERQGLLHEGSGAMVMSASVEI 80 (1200)
T ss_pred CceEEeeeccchhhccccccCCCCCCcceEecCCCCCchhhHHHhhhhcccchhhcCHHHHhhhhhcCCCcceEEEEEEE
Confidence 99999999999999999999889999999999999999999999999999988999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCccEEEEEEeecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHHHHHH
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLK 160 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~~~le 160 (1099)
+|+|+++++|.++++|+|+|.++..++.|++|++.|+..+|..+|.+.||+++|||||++||+|.++..+++.+|+.+|.
T Consensus 81 vF~nsdnr~~~~k~Ev~lrRtVGlKKDeY~lD~k~Vtk~evvnLLESAGFSrsNPYyIV~QGkI~~La~akD~eRL~LLk 160 (1200)
T KOG0964|consen 81 VFDNSDNRLPRGKSEVSLRRTVGLKKDEYFLDNKMVTKGEVVNLLESAGFSRSNPYYIVPQGKINELANAKDSERLELLK 160 (1200)
T ss_pred EEeCcccccCCCCCeEEEEEeecccchhhhcccccccHHHHHHHHHhcCcccCCCceEeechhhHHhhcCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 161 EIGGTRVYEERRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARQKLL 240 (1099)
Q Consensus 161 e~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 240 (1099)
+++|+..|.++++++.+.|.+|..+...+...+..+++++..|+.+.+.+..|+++.+..+.++|..+..++.++..++.
T Consensus 161 eVaGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~ 240 (1200)
T KOG0964|consen 161 EVAGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELE 240 (1200)
T ss_pred HhcccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHhcch
Q 001328 241 EVDDTRTRFSDESAKMYNSLLDAQEKSKDSDKRFKDLMKEVQTLNKEKEAIEKRLTEAIKNQTAFELDVKDIQERISGNS 320 (1099)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1099)
.+.......-.........+......+..+...+..+...+..+..+.+.+..+...+.+....++-.+..++.++....
T Consensus 241 ~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~ 320 (1200)
T KOG0964|consen 241 RLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNE 320 (1200)
T ss_pred HHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhh
Confidence 99999999988888888999999999999999999999999999988888888888888888899999999999999888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHH
Q 001328 321 QARDDAKKQLRSLLEEIDDSSKELDKANTLYENKCIEEKKITKDIMEREKQLSILYQKQGRATQFSSKDARDKWLQKEID 400 (1099)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1099)
+........+..+..++.+...++..+.+.+..+..+...+...+..++.....+..+.++..++.+..++..|++.++.
T Consensus 321 q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~ 400 (1200)
T KOG0964|consen 321 QQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIE 400 (1200)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001328 401 DLERVHSSNLKQDQKLQEEIQRLKGDLKERDEYIESRKREIAYLESSISQSREGFNNHKTQRDKMQDERKSLWVKESELC 480 (1099)
Q Consensus 401 ~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1099)
.+..-+.........+..++..+..++......+..+...+.....+++.+......+..+++++......+|++-..++
T Consensus 401 ~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~ 480 (1200)
T KOG0964|consen 401 KLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLR 480 (1200)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhCCcchHHhHHHHHHHHHHcCCCccccccccccccchhhHHHHHHhhccCcceEEecCchH
Q 001328 481 AEIDKLKAEVEKAEKSLDHATPGDVRRGLNSIRRICREYKIDGVYGPIIELLDCDEKFFTAVEVTAGNSLFHVVVDNDET 560 (1099)
Q Consensus 481 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~aie~~l~~~l~~~vv~~~~~ 560 (1099)
..+..+...+......+...++.++..++..++.+....++.|++|+|++++.||+.|.+|++++.|+.++++||+++++
T Consensus 481 ~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndev 560 (1200)
T KOG0964|consen 481 SLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEV 560 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHH
Confidence 99999999999999999988899999999999999988888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEeCCCCCCCCCCCCCcccccccccccccCcchHHHHHHhccCeEEecChHHHHHHHHhcCCc
Q 001328 561 STKIIRHLNSLKGGRVTFIPLNRVKAPRVTYPKSNDVIPLLDRLEFSPNFKPAFAQVFARTVICRDLDVCTRVARTDGLD 640 (1099)
Q Consensus 561 a~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ 640 (1099)
|..++..+.+.+.|++||+|+++++++.+.+|..+.+.|+++.+.|+|.|.+++.+++|+++||.+++.|.+.++.+...
T Consensus 561 ATkIl~~~n~m~~GrVTF~PLNrl~~r~v~yp~~sdaiPli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln 640 (1200)
T KOG0964|consen 561 ATKILRKLNKMKGGRVTFMPLNRLKARDVEYPKDSDAIPLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRLAKKHELN 640 (1200)
T ss_pred HHHHHHHHHhccCCeeEEeecccCchhhccCCCCCCccchHHHhCcchhhHHHHHHHhCceEEeccHHHHHHHHHhcCCC
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcccCCcceecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHH
Q 001328 641 CITLEGDQVSKKGGMTGGFYDYRRSKLKFMNIIMRNTKTINAREEEVEKLISQ---LDQKITEHVTEQQKTDAKRAHDKS 717 (1099)
Q Consensus 641 ~vt~~g~~~~~~g~~~g~~~~~~~~~~~~~~~l~~l~~~~~~l~~~l~~~~~~---l~~~l~~~~~~~~~l~~~~~~l~~ 717 (1099)
|||++|+.++..|.|+||+.+...+.+.+...+...+.++.++...+..++.. ..+++.++...++.++..+.....
T Consensus 641 ~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~ 720 (1200)
T KOG0964|consen 641 CITLSGDQVSKKGVLTGGYEDQKRSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKR 720 (1200)
T ss_pred eEEeccceecccCCccccchhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999888888988888888888888888888883333 334444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhCCHHHHHHHhhhhHHHHHHHHH
Q 001328 718 ELEQLKQDIANANKQKQIISKALENKEKSLADVRTQLDQLEASMAMKQAEMNTDLIDHLSLDEKNLLSRLNPEITELKEK 797 (1099)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 797 (1099)
....+..++..+..+...++..+......+..+...+..+.+....+++++.......+.......+..+..++..+..+
T Consensus 721 ~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~k 800 (1200)
T KOG0964|consen 721 EHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVK 800 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHH
Confidence 55555556666666666666666667777777777788888888888888887777788888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 798 LITCRTDRIEYETRKAELETNLTTNLMRRKQELEALISSAENDVMLSEAESKKQELADAKSFVEDARQELKRVSDSIVQL 877 (1099)
Q Consensus 798 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 877 (1099)
+..+..+...+...+..++..+..++..+...+++.+.++........+.....++......+.....++..++..++..
T Consensus 801 l~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~ 880 (1200)
T KOG0964|consen 801 LRALREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKK 880 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999988776667777778888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhhccCCHHHHHHHHH
Q 001328 878 TKELNKIKDEKTKLKTLEDNYERKLQDDARELEQLLSRRNILLAKQEEYSKKIRELGPLSSDAFDTYKRKGVKELLKMLH 957 (1099)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 957 (1099)
...+.+....++.+..-....... ......++.+...+..+..+.+++...|..+|.+|.++|..|......++..+|.
T Consensus 881 ~a~~~~~~~~lE~~~~lek~~~~~-~~~dKe~Ek~~~rk~~Ll~KreE~~ekIr~lG~Lp~daf~ky~~~~~~el~kkL~ 959 (1200)
T KOG0964|consen 881 KAEIKEIKKELEKAKNLEKEKKDN-INFDKELEKLVRRKHMLLKKREECCEKIRELGVLPEDAFEKYQDKKSKELMKKLH 959 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHhccCCHHHHHHHHH
Confidence 887777777776665544433333 2233566666667777777888899999999999999999999989999999999
Q ss_pred HHHHHhccCccCcHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001328 958 RCNEQLQQFSHVNKKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQG 1037 (1099)
Q Consensus 958 ~l~~~l~~l~~vn~~a~ee~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~~~~~f~~in~~f~~~f~~lf~g 1037 (1099)
.+..+|..|++||.+|+++|..+.++.+.|..+.++|..+.+.|.+.|..|+.+..+.+..||.+|.++|.++|.+|+||
T Consensus 960 ~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eELd~s~~sI~eLi~vLdqrK~eai~~TFkqV~knFsevF~~LVp~ 1039 (1200)
T KOG0964|consen 960 RCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEELDRSKDSILELITVLDQRKYEAIDLTFKQVKKNFSEVFSRLVPG 1039 (1200)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeeccCCCCCC-CCCCC-CCCCCccCCccccccceEEEEecCCCcc
Q 001328 1038 GHGHLVMMKKKDGDHGD-DDDDD-GPRESDVEGRVEKYIGVKVKACTSVKMN 1087 (1099)
Q Consensus 1038 G~a~L~l~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~Gi~i~~~ppgk~~ 1087 (1099)
|.|.|+| ++.|.+..+ +|+.+ +..++.....+++|+||.|.|+|.||-+
T Consensus 1040 G~a~iim-~k~d~~~d~~e~d~~~~~~s~~~~~sv~~ytGIsI~VSFnskq~ 1090 (1200)
T KOG0964|consen 1040 GTALIIM-RKRDNANDHDEDDGDMDGESNEGKDSVEMYTGISIKVSFNSKQG 1090 (1200)
T ss_pred Cceeehh-hccccccccccccccccccccccccchhhccceeEEEEeecCcc
Confidence 9997777 555432211 12222 2222346778999999999999999876
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.7e-104 Score=970.59 Aligned_cols=1034 Identities=27% Similarity=0.439 Sum_probs=662.9
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc-cccccchhhhhhhhccCCCC--cceEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLRSEDRHALLHEGAGH--QVLSAF 77 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~~~~~~~~i~~g~~~--~~~~a~ 77 (1099)
|+|++|++.|||||++++.+ +|+||+|+||||||||||||+|||+||||+ +++.+|+++|.|+||+|++. |.+.|+
T Consensus 1 m~lk~i~l~gFKSF~~~~~i-~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~ 79 (1163)
T COG1196 1 MYLKRIELKGFKSFADPTEI-NFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSGNRKPANYAE 79 (1163)
T ss_pred CeeeEEEEECcccCCCCeee-ecCCCCeEEECCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCCCCCCCCceE
Confidence 99999999999999998888 899999999999999999999999999999 79999999999999999985 778899
Q ss_pred EEEEEeCCCCCCCCCCccEEEEEEe-ecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHH
Q 001328 78 VEIVFDNSDNRIPVDKEEVRLRRTI-GLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERL 156 (1099)
Q Consensus 78 v~~~f~~~~~~~~~~~~~~~i~R~~-~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~ 156 (1099)
|+++|+|+|+.+|+++.+|+|+|++ ++|.|.|||||.+|+.+||.++|.++|+++ ++|+||+||+|+.|++++|.+|+
T Consensus 80 V~l~fdN~d~~~~~~~~ei~v~Rri~r~g~S~Y~INg~~~~~~dI~~l~~~~gi~~-~~~~iV~QG~V~~i~~~kp~err 158 (1163)
T COG1196 80 VELTFDNSDNTLPLEYEEISVTRRIYRDGESEYYINGEKVRLKDIQDLLADSGIGK-ESYSIVSQGKVEEIINAKPEERR 158 (1163)
T ss_pred EEEEEeCCCCcCCcccceEEEEEEEEEcCCcEEEECCcEeeHHHHHHHHHhcCCCC-CCCceeecccHHHHHcCCHHHHH
Confidence 9999999999999999999999999 666789999999999999999999999998 45599999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 157 DLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDAR 236 (1099)
Q Consensus 157 ~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 236 (1099)
.+|++++|+..|+.++.++...+..+..++.++.+.+.++..++++|+.+.+.+.+|..+..++..++......+|....
T Consensus 159 ~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~ 238 (1163)
T COG1196 159 KLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELR 238 (1163)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 001328 237 QKLLEVDDTRTRFSDESAKMYNSLLDAQEKSKDSDKRFKDLMKEVQTLNKEKEAIEKRLTEAIKNQTAFELDVKDIQERI 316 (1099)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1099)
.++..+...+..+...+..+...+......+..+...+..+...+....... ..+...+..++.++..+..++
T Consensus 239 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~-------~~~~~~~~~le~~~~~~~~~~ 311 (1163)
T COG1196 239 KELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL-------LELKEEIEELEGEISLLRERL 311 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 9888888888888766666666666666666555555555555544443333 333334444444444444444
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcccccccCCHHHHH
Q 001328 317 SGNSQARDDAKKQLRSLLEEIDDSSKELDKANTLYENKCIEEKKITKDIMEREKQLS----ILYQKQGRATQFSSKDARD 392 (1099)
Q Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 392 (1099)
.............+..+...+......+.........+......+.......+.... ........+ ...+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~------~~~~ 385 (1163)
T COG1196 312 EELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEAL------REEL 385 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------HHHH
Confidence 444444444444444444444433333333322222222222222222222211111 010000011 1222
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHH
Q 001328 393 KWLQKEIDDLERVHSSNLKQDQKLQEEIQRLKGDL-------KERDEYIESRKREIAYLESSISQSREGFNNHKTQRDKM 465 (1099)
Q Consensus 393 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~-------~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 465 (1099)
..+..+......++..++.++..+...+..+.... ..+...+......+..+...+..+...+..+...+..+
T Consensus 386 ~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 465 (1163)
T COG1196 386 AELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKEL 465 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333333333333333333333333333 33333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcchHHhHHHHHHHHHHcCCCccccccccccccchhhHHHHHHh
Q 001328 466 QDERKSLWVKESELCAEIDKLKAEVEKAEKSLDHATPGDVRRGLNSIRRICREYKIDGVYGPIIELLDCDEKFFTAVEVT 545 (1099)
Q Consensus 466 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~aie~~ 545 (1099)
...+..+...+..+...+..+...+..+...... ..+...+..+.... ++|++|++++++.|+++|.+||+++
T Consensus 466 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~-~~Gv~G~v~~li~v~~~y~~Aie~a 538 (1163)
T COG1196 466 ERELAELQEELQRLEKELSSLEARLDRLEAEQRA------SQGVRAVLEALESG-LPGVYGPVAELIKVKEKYETALEAA 538 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhHHHHHHHHhcc-CCCccchHHHhcCcChHHHHHHHHH
Confidence 3333333333333333333333333333322221 11111222222333 7899999999999999999999999
Q ss_pred hccCcceEEecCchHHHHHHHHHhhcCCCeeEEEeCCCCCCCCCCCCC-cccccccc-cccccCcchHHHHHHhccCeEE
Q 001328 546 AGNSLFHVVVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKAPRVTYPK-SNDVIPLL-DRLEFSPNFKPAFAQVFARTVI 623 (1099)
Q Consensus 546 l~~~l~~~vv~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~ 623 (1099)
+|+.++++||+++.+|..|+.+++..+.|++||+|++.+.+.....+. .+|+.|++ ++|.+||.|.+++.++||+++|
T Consensus 539 lG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~~~g~~~~a~dli~~d~~~~~~~~~~l~~t~I 618 (1163)
T COG1196 539 LGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLV 618 (1163)
T ss_pred cccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhccccccccccccchhHHHHHHhcCCHHHHHHHHHHhCCeEE
Confidence 999999999999999999999999999999999999999865543222 56777664 9999999999999999999999
Q ss_pred ecChHHHHHHHHh--cCCcEEecCCCcccCCcceecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 624 CRDLDVCTRVART--DGLDCITLEGDQVSKKGGMTGGFYDYRRSKLKFMNIIMRNTKTINAREEEVEKLISQLDQKITEH 701 (1099)
Q Consensus 624 ~~~~~~a~~~~~~--~~~~~vt~~g~~~~~~g~~~g~~~~~~~~~~~~~~~l~~l~~~~~~l~~~l~~~~~~l~~~l~~~ 701 (1099)
|++++.|..+... +++++||++|+++.++|+++||+.....+ +....++..+..++..+...+.. +...+..+
T Consensus 619 v~~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~----~~~~~~~~ 693 (1163)
T COG1196 619 VDDLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRNKRSS-LAQKRELKELEEELAELEAQLEK----LEEELKSL 693 (1163)
T ss_pred ecCHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCCccccch-hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 9999999999886 48899999999999999999996554444 33333555666666666666655 33444444
Q ss_pred HHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 001328 702 VTEQQKTDAKRAHDKSELEQ-------LKQDIANANKQKQIISKALENKEKSLADVRTQLDQLEASMAMKQAEMNTDLID 774 (1099)
Q Consensus 702 ~~~~~~l~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~ 774 (1099)
...+..+...+..+...... +..++..+......+..++..+...+..+...+..+...+..+...+......
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 773 (1163)
T COG1196 694 KNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEA 773 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443 33333333344444444444444444443333333433333333333321111
Q ss_pred hCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hhhhhHHHHHHH
Q 001328 775 HLSLDEKNLLSRLNPEITELKEKLITCRTDRIEYETRKAELETNLTTNLMRRKQELEALISSAEND--VMLSEAESKKQE 852 (1099)
Q Consensus 775 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~ 852 (1099)
. ......+..+..........+..+...+.....++..+..++ ..+......+...+..+... .+...+..+...
T Consensus 774 ~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~ 850 (1163)
T COG1196 774 L--AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALEREL-ESLEQRRERLEQEIEELEEEIEELEEKLDELEEE 850 (1163)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 111222233222222233333333333333333333333333 22333333333333333222 011112222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001328 853 LADAKSFVEDARQELKRVSDSIVQLTKELNKIKDEKTKLKTLEDNYERKLQDDARELEQLLSRRNILLAKQEEYSKKIRE 932 (1099)
Q Consensus 853 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 932 (1099)
+..+...+..+..++......+..+...+...+.....+..++..+...+..+...+..+......+......+...+..
T Consensus 851 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 930 (1163)
T COG1196 851 LEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPE 930 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333333333333333333333333333333333333333333333322222222222222222222222222
Q ss_pred cCCCChhhhhhhccCCHHHHHHHHHHHHHHhccCccCcHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001328 933 LGPLSSDAFDTYKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDQRK 1012 (1099)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~vn~~a~ee~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~ 1012 (1099)
...... +.+...-...++..+..++.++..+|+||+.|+++|+.+.++|.++..+++|+..++..|.+.|.+++..+
T Consensus 931 ~~~~~~---~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~ 1007 (1163)
T COG1196 931 LEEELE---EEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007 (1163)
T ss_pred HHhhhc---cccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111000 00001111278999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCceEEEEEeeccCCCCCCCCCCCCCCCCccCCccccccceEEEEecCCCccc
Q 001328 1013 DESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHGDDDDDDGPRESDVEGRVEKYIGVKVKACTSVKMNS 1088 (1099)
Q Consensus 1013 ~~~~~~~f~~in~~f~~~f~~lf~gG~a~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~i~~~ppgk~~~ 1088 (1099)
...|+++|+.||.+|+.+|+.|||||.|+|+| ++||+ +++ +||+|.|+||||+++
T Consensus 1008 ~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l--------~~~dd-----------~l~--~Giei~a~ppgK~~~ 1062 (1163)
T COG1196 1008 RERFKETFDKINENFSEIFKELFGGGTAELEL--------TEPDD-----------PLT--AGIEISARPPGKKLQ 1062 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEe--------CCCCc-----------hhh--cCcEEEEECCCCCcc
Confidence 99999999999999999999999999999999 67666 244 899999999999987
No 3
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3e-88 Score=737.60 Aligned_cols=1037 Identities=21% Similarity=0.316 Sum_probs=630.9
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCc-ceEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQ-VLSAFVE 79 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~-~~~a~v~ 79 (1099)
|+|..|.+.|||||+|.++++||++.+|+|||||||||||++||+.||||..++.+|..+.+++||++.+.| .-+|+|+
T Consensus 84 L~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~kiR~~klS~LIh~S~~~~~l~SCsV~ 163 (1293)
T KOG0996|consen 84 LMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASKIRSKKLSALIHKSDGHPNLQSCSVE 163 (1293)
T ss_pred eeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhHHhHHHHHHHHhccCCCCCCcceeEE
Confidence 578999999999999999999999999999999999999999999999999999999999999999988754 4569999
Q ss_pred EEE----eCCCCCC-CCCCccEEEEEEe-ecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCH-
Q 001328 80 IVF----DNSDNRI-PVDKEEVRLRRTI-GLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKD- 152 (1099)
Q Consensus 80 ~~f----~~~~~~~-~~~~~~~~i~R~~-~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~- 152 (1099)
|.| |-+++.| .++++++.|+|.. +.+.|.|+|||++.+.++|..+|...|++..+..|+|-||.|..|+-|+|
T Consensus 164 vhFq~iiD~~~~~~E~vp~s~~~ItRtA~~~NsSkY~Ingk~as~~~V~~lLk~~gIDleHNRFLILQGEVE~IA~MKPk 243 (1293)
T KOG0996|consen 164 VHFQKIIDKPGGTYEVVPDSEFTITRTAFRDNSSKYYINGKEASFKDVTKLLKSHGIDLEHNRFLILQGEVEQIAMMKPK 243 (1293)
T ss_pred EeeeeeeccCCCceeecCCCeeEEEehhhhCCCceEeECCccccHHHHHHHHHhcCCCCccceeeeehhhHHHHHhcCCC
Confidence 999 4566666 4789999999999 67789999999999999999999999999999999999999999999999
Q ss_pred ------HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 153 ------SERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYT 226 (1099)
Q Consensus 153 ------~~~~~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 226 (1099)
...++||+++.|+.+|..-+++...++..+...+......+.-.......|+.....+-.|.....++..+...
T Consensus 244 ~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~ 323 (1293)
T KOG0996|consen 244 AQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNK 323 (1293)
T ss_pred CCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999888888888888899999998888888888777777766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 227 IYDKELHDARQKLLEVDDTRTRFSDESAKMYNSLL--------DAQEKSKDSDKRFKDLMKEVQTLNKEKEAIEKRLTEA 298 (1099)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (1099)
.....+......+....+.+..+...+........ ..+.....+......+...+..+..+...++.+-...
T Consensus 324 ~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~ 403 (1293)
T KOG0996|consen 324 LCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKR 403 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555444433333222 1111111222222222223333333333333333333
Q ss_pred HHHHHHhHhhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001328 299 IKNQTAFELDVKDIQERISGNSQARDDAKKQLRSLLEEIDDSSKELDKANTLYENKCIEEKKITKDIMEREKQLSILYQK 378 (1099)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 378 (1099)
.+.+..+.+.+..+...++.....+..++...+.....+..++.++..+.... ...+..+......
T Consensus 404 ~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~--------------~~~~~~l~e~~~~ 469 (1293)
T KOG0996|consen 404 EEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELL--------------EKEERELDEILDS 469 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 33444444444444444333333333333333333333333333333333333 3333333222222
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 001328 379 QGRATQFSSKDARDKWLQKEIDDLERVHSSNLKQDQKLQEEIQRLKGDLKERDEYIESRKREI-------AYLESSISQS 451 (1099)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~-------~~l~~~~~~~ 451 (1099)
+..-.... .+.+..++.++..+..++.....++.-.+.++.-+..........++.+...+ ......+..+
T Consensus 470 l~~~t~~~--~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~ 547 (1293)
T KOG0996|consen 470 LKQETEGI--REEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDL 547 (1293)
T ss_pred Hhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111111 22233333333334444444444443333333333333333333333333332 2333333333
Q ss_pred HhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcchHHhHHHHHHHHHHcCCCccccccccc
Q 001328 452 REGFNNHKTQRDKMQDERKSLWVKESELCAEIDKLKAEVEKAEKSLDHATPGDVRRGLNSIRRICREYKIDGVYGPIIEL 531 (1099)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 531 (1099)
...+...+.++.+....+..+..+...+...+..++..+..+...+.. ...-...+.++.+......++|++|.++|+
T Consensus 548 k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~--~~s~~kVl~al~r~kesG~i~Gf~GRLGDL 625 (1293)
T KOG0996|consen 548 KEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSS--SRSRNKVLDALMRLKESGRIPGFYGRLGDL 625 (1293)
T ss_pred HHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHcCCCCccccccccc
Confidence 333333444444444444444444455555555555555555444431 112334445555555555689999999999
Q ss_pred cccchhhHHHHHHhhccCcceEEecCchHHHHHHHHHhhcCCCeeEEEeCCCCCC--CCC-CCCCccccccccccccc-C
Q 001328 532 LDCDEKFFTAVEVTAGNSLFHVVVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKA--PRV-TYPKSNDVIPLLDRLEF-S 607 (1099)
Q Consensus 532 i~~~~~~~~aie~~l~~~l~~~vv~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~i~~-~ 607 (1099)
..+|+.|..||.+ +++.+.++||++.++|+.|+.+|+..+.||+||++|+.+.. ... +...+.+++.+.|+|.+ +
T Consensus 626 g~Id~kYDvAIsT-ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~~~d 704 (1293)
T KOG0996|consen 626 GAIDEKYDVAIST-ACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAPITTPENVPRLFDLVKCKD 704 (1293)
T ss_pred cccchHHHHHHHH-hccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCCCCCCCCcchHhhhhccCC
Confidence 9999999999998 67889999999999999999999999999999999998872 222 23344677888999999 6
Q ss_pred cchHHHHHHhccCeEEecChHHHHHHHHh-c-CCcEEecCCCcccCCcceecccccccchhHHH--------HHHHHHHH
Q 001328 608 PNFKPAFAQVFARTVICRDLDVCTRVART-D-GLDCITLEGDQVSKKGGMTGGFYDYRRSKLKF--------MNIIMRNT 677 (1099)
Q Consensus 608 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~-~-~~~~vt~~g~~~~~~g~~~g~~~~~~~~~~~~--------~~~l~~l~ 677 (1099)
+.+.+++++++++|+||++++.|.+++.. . ++++||++|.++.++|+|+||+.....+.... ......++
T Consensus 705 ~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le 784 (1293)
T KOG0996|consen 705 EKFRPAFYFALRDTLVADNLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLE 784 (1293)
T ss_pred HHHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCceEEEEecceeecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHH
Confidence 99999999999999999999999999975 3 37899999999999999999865322221100 11222333
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001328 678 KTINAREEEVEKLISQ---LDQKITEHVTEQQKTDAKRAHDKSELEQLKQDIANANKQKQIISKALENK---EKSLADVR 751 (1099)
Q Consensus 678 ~~~~~l~~~l~~~~~~---l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~ 751 (1099)
.++............. ++..+..++..+..+..++..+......+...++.+..++..++...... ...+..++
T Consensus 785 ~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~ 864 (1293)
T KOG0996|consen 785 RALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELE 864 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHH
Confidence 3333333333321110 33334444444444444444444444444333344444443333321111 01112222
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhCCHHHHHHHhhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001328 752 TQLDQLEASMAMKQAEMNTDLIDHLSLDEKNLLSRLNPEITE--------LKEKLITCRTDRIEYETRKAELETNLT--- 820 (1099)
Q Consensus 752 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~l~~~~~~~~~~~~~~~~l~~~l~--- 820 (1099)
..+..++.++.+++..-. . .+++..++..+.. .+.+++.+..++..+...+..+...+.
T Consensus 865 ~~ie~l~kE~e~~qe~~~---------K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~ 934 (1293)
T KOG0996|consen 865 EQIEELKKEVEELQEKAA---------K-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSD 934 (1293)
T ss_pred HHHHHHHHHHHHHHHhhh---------H-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCc
Confidence 222222222222211000 0 1122222222221 122222222233333323222222221
Q ss_pred ---HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 821 ---TNLMRRKQELEALISSAENDVMLSEAESKKQELADAKSFVEDARQELKRVSDSIVQLTKELNKIKDEKTKLKTLEDN 897 (1099)
Q Consensus 821 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1099)
......+..++..+...... ++.+...+..+.....++...+.+....+.++...+..+...+..+.....+
T Consensus 935 ~~i~k~q~~l~~le~~~~~~e~e-----~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~ 1009 (1293)
T KOG0996|consen 935 RNIAKAQKKLSELEREIEDTEKE-----LDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENE 1009 (1293)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222333333333322221 3333333333333333333333333333444444444444444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh-h----------hhhhhccC-CHHHHHHHHHHHHHHhcc
Q 001328 898 YERKLQDDARELEQLLSRRNILLAKQEEYSKKIRELGPLSS-D----------AFDTYKRK-GVKELLKMLHRCNEQLQQ 965 (1099)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~----------~~~~~~~~-~~~~l~~~l~~l~~~l~~ 965 (1099)
+....-.+...++........+...+......+..+...+. + ..+..+.. ....+...+.-+..++..
T Consensus 1010 lk~~rId~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~tE~~~~~~~~~~~~Eeleae~~~~~i~e~i~~lE~~~~~ 1089 (1293)
T KOG0996|consen 1010 LKAERIDIENKLEAINGELNEIESKIKQPEKELKKLSLCNMTETRPQIELDVESPEELEAEMLEDNINEKIALLEKRVEE 1089 (1293)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHhhhhhHHHhhCccccccchhhccccccccCChHHHHhhhcHhhHHHHHHHHHHHHHH
Confidence 33311113333444443333443333333333332211111 0 00111111 112244467888899999
Q ss_pred CccCcHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEEe
Q 001328 966 FSHVNKKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMM 1045 (1099)
Q Consensus 966 l~~vn~~a~ee~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~~~~~f~~in~~f~~~f~~lf~gG~a~L~l~ 1045 (1099)
++.||..++.+|..-...|..-...++......++..+.+..|.+.....|+.+|..|..+.+++|++++.||+|+|+|
T Consensus 1090 l~~vd~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLkemYQmIT~GGdAeLEl- 1168 (1293)
T KOG0996|consen 1090 LREVDLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQMITLGGDAELEL- 1168 (1293)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEe-
Confidence 9999999999999988888887778888888888889999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCCCCCCccCCccccccceEEEEecCCCccceeeeee
Q 001328 1046 KKKDGDHGDDDDDDGPRESDVEGRVEKYIGVKVKACTSVKMNSFAFIKI 1094 (1099)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~i~~~ppgk~~~~~~~~~ 1094 (1099)
+|+.||++ -||.++|+|| |-||++|-|
T Consensus 1169 ----VDslDPFs----------------eGV~FSVrPp--KKSWK~I~N 1195 (1293)
T KOG0996|consen 1169 ----VDSLDPFS----------------EGVMFSVRPP--KKSWKNISN 1195 (1293)
T ss_pred ----eccCCCcc----------------cCceEEeeCc--hhhhhhccc
Confidence 99999998 9999999999 669999865
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=3.4e-85 Score=838.06 Aligned_cols=1042 Identities=22% Similarity=0.371 Sum_probs=657.8
Q ss_pred eeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc-cccccchhhhhhhhccCCC-CcceEEEEE
Q 001328 2 HIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLRSEDRHALLHEGAG-HQVLSAFVE 79 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~~~~~~~~i~~g~~-~~~~~a~v~ 79 (1099)
||++|.|.||+||.+.+.+ +|+||+|+|+||||||||||+|||.||||+ +++.+|+..+.++||.|.. .+...|+|.
T Consensus 1 ~i~~l~l~nf~s~~~~~~i-~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~~~~~i~~~~~~~~~~~~~v~ 79 (1164)
T TIGR02169 1 YIERIELENFKSFGKKKVI-PFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNEAYVT 79 (1164)
T ss_pred CeeEEEEeCeeeECCeeEE-eecCCeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhhHHHhhcccccCCCCceEEEE
Confidence 6899999999999987778 699999999999999999999999999999 5667788889999998543 356789999
Q ss_pred EEEeCCCCCCCCCCccEEEEEEee---cCC-CeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHH
Q 001328 80 IVFDNSDNRIPVDKEEVRLRRTIG---LKK-DEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSER 155 (1099)
Q Consensus 80 ~~f~~~~~~~~~~~~~~~i~R~~~---~~~-~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~ 155 (1099)
++|.++++.+| +++.|.|++. .|. +.|++||.+++..++.+++..+|+++. .|.++.||++..|+.++|.+|
T Consensus 80 ~~f~~~~~~~~---~~~~i~r~~~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~~~-~~~~~~qg~~~~~~~~~~~~r 155 (1164)
T TIGR02169 80 VTFKNDDGKFP---DELEVVRRLKVTDDGKYSYYYLNGQRVRLSEIHDFLAAAGIYPE-GYNVVLQGDVTDFISMSPVER 155 (1164)
T ss_pred EEEEcCCCCCC---CcEEEEEEEEEcCCCCcceEEECCccccHHHHHHHHHHcCCCcC-cceEEecchHHHHHCCCHHHH
Confidence 99998876654 5677877752 444 789999999999999999999999874 467889999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 156 LDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDA 235 (1099)
Q Consensus 156 ~~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 235 (1099)
+.+|++++|+..|..++.++...+..+.+.+.++...+..+..++..+..+.+...+|..+...+..+.+......+..+
T Consensus 156 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~ 235 (1164)
T TIGR02169 156 RKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEAL 235 (1164)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888777777777777
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 001328 236 RQKLLEVDDTRTRFSDESAKMYNSLLDAQEKSKDSDKRFKDLMKEVQTLN-KEKEAIEKRLTEAIKNQTAFELDVKDIQE 314 (1099)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (1099)
...+..+...+..+...+..+...+..+...+..+...+..+...+..+. ..+..++.++..+...+..+...+..+..
T Consensus 236 ~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (1164)
T TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKER 315 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777666666666665533 34444555555555555555555555555
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC-CHHHHHH
Q 001328 315 RISGNSQARDDAKKQLRSLLEEIDDSSKELDKANTLYENKCIEEKKITKDIMEREKQLSILYQKQGRATQFS-SKDARDK 393 (1099)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 393 (1099)
.+..+......+...+..+..++..+...+..+...+..+...+..+...+..+...+..+......+.... .....+.
T Consensus 316 ~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 395 (1164)
T TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555444444444444444444444444444444444333333222220000 0022222
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Q 001328 394 WLQKEIDDLERVHSSNLKQDQKLQEEIQRLKGDLKERDEYIESRKREIAYLESSISQSREGFNNHKTQRDKMQDERKSLW 473 (1099)
Q Consensus 394 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1099)
.+..++..+..++..+...+..+...+..++..+..+...+..+...+..+...+..+...+..+...+..+...+..+.
T Consensus 396 ~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~ 475 (1164)
T TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhCCcchHHhHHHHHHHHHHcCCCccccccccccccchhhHHHHHHhhccCcceE
Q 001328 474 VKESELCAEIDKLKAEVEKAEKSLDHATPGDVRRGLNSIRRICREYKIDGVYGPIIELLDCDEKFFTAVEVTAGNSLFHV 553 (1099)
Q Consensus 474 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~aie~~l~~~l~~~ 553 (1099)
..+..+...+..+...+..+...........+. ...++.++. ..++|++|+++++|.|++.|..||++++|+.++++
T Consensus 476 ~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~--~~~i~~~~~-~~~~g~~g~l~dli~v~~~y~~Aie~~lg~~l~~i 552 (1164)
T TIGR02169 476 EEYDRVEKELSKLQRELAEAEAQARASEERVRG--GRAVEEVLK-ASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNV 552 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--hHHHHHHHh-cCCCCceecHHHhcCcCHHHHHHHHHHhhhhhCCE
Confidence 455555555554544444443332210000010 022333332 23578999999999999999999999999999999
Q ss_pred EecCchHHHHHHHHHhhcCCCeeEEEeCCCCCCCC--CCCCCccccc-ccccccccCcchHHHHHHhccCeEEecChHHH
Q 001328 554 VVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKAPR--VTYPKSNDVI-PLLDRLEFSPNFKPAFAQVFARTVICRDLDVC 630 (1099)
Q Consensus 554 vv~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~a 630 (1099)
||++..+|..|+.+|+..+.|++||+|++.+++.. ...+.++++. ++.++|.+++.+.+++.++||++++|++++.|
T Consensus 553 vv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~lg~~~v~~~l~~a 632 (1164)
T TIGR02169 553 VVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAA 632 (1164)
T ss_pred EECCHHHHHHHHHHHHhcCCCCeeeccHhhcCCCCCCcccccCCCchHHHHHHccCcHHHHHHHHHHCCCeEEEcCHHHH
Confidence 99999999999999999999999999999876422 1222223443 35689999999999999999999999999999
Q ss_pred HHHHHhcCCcEEecCCCcccCCcceecccccccc-hhHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 001328 631 TRVARTDGLDCITLEGDQVSKKGGMTGGFYDYRR-SKLKF--MNIIMRNTKTINAREEEVEKLISQ---LDQKITEHVTE 704 (1099)
Q Consensus 631 ~~~~~~~~~~~vt~~g~~~~~~g~~~g~~~~~~~-~~~~~--~~~l~~l~~~~~~l~~~l~~~~~~---l~~~l~~~~~~ 704 (1099)
..++. +++|||++|++++++|.|+||+..... ..+.. ...+..+..++..+...+..+... +...+..+...
T Consensus 633 ~~~~~--~~~~vTldG~~~~~~G~~tgG~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~ 710 (1164)
T TIGR02169 633 RRLMG--KYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE 710 (1164)
T ss_pred HHHhc--CCcEEEeCceeEcCCcCccCCCCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99885 778999999999999999999732111 22222 344445555555555544442211 33333334444
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh--
Q 001328 705 QQKTDAKRAHDKSELEQLKQDIANANKQKQIIS-------KALENKEKSLADVRTQLDQLEASMAMKQAEMNTDLIDH-- 775 (1099)
Q Consensus 705 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~-- 775 (1099)
+..+...+..+...+..+...+..+..++..+. ..+..+...+..+...+..+...+..+...+.......
T Consensus 711 ~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~el~~l~~~i~~l~~~i~~l~~el~~l~~~~~~ 790 (1164)
T TIGR02169 711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333333333333333333333333333333 33333333333333333333333333333322110000
Q ss_pred -CCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 001328 776 -LSLDEKNLLSRLNPEITELKEKLITCRTDRIEYETRKAELETNLTTNLMRRKQELEALISSAENDVMLSEAESKKQELA 854 (1099)
Q Consensus 776 -~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 854 (1099)
........+..+...+..+...+..+...+..+...+..+...+ ..+...+..+...+ ..+...+.
T Consensus 791 ~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~-~~l~~~~~~l~~~~------------~~~~~~~~ 857 (1164)
T TIGR02169 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI-QELQEQRIDLKEQI------------KSIEKEIE 857 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH------------HHHHHHHH
Confidence 00001112233333333333333333333333333333333322 22222222222222 22222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001328 855 DAKSFVEDARQELKRVSDSIVQLTKELNKIKDEKTKLKTLEDNYERKLQDDARELEQLLSRRNILLAKQEEYSKKIRELG 934 (1099)
Q Consensus 855 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 934 (1099)
.+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+......+...+..+...+..+.
T Consensus 858 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 937 (1164)
T TIGR02169 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE 937 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333321
Q ss_pred CCChhhhhhhc--cCCHHHHHHHHHHHHHHhccCccCcHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001328 935 PLSSDAFDTYK--RKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDQRK 1012 (1099)
Q Consensus 935 ~~~~~~~~~~~--~~~~~~l~~~l~~l~~~l~~l~~vn~~a~ee~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~ 1012 (1099)
....... .+. ..+...+..++..+..+|..+|+||+.|+++|+.+..+|.++..+++|+...++.|...|..|+..+
T Consensus 938 ~~~~~~~-~~~~~~~~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~ 1016 (1164)
T TIGR02169 938 DPKGEDE-EIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016 (1164)
T ss_pred hhhhhhh-hcccccCCHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110000 010 1256789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCceEEEEEeeccCCCCCCCCCCCCCCCCccCCccccccceEEEEecCCCccce
Q 001328 1013 DESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHGDDDDDDGPRESDVEGRVEKYIGVKVKACTSVKMNSF 1089 (1099)
Q Consensus 1013 ~~~~~~~f~~in~~f~~~f~~lf~gG~a~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~i~~~ppgk~~~~ 1089 (1099)
...|..+|..|+.+|..+|+.|| ||.|.|.| .+|++ +++ +||.|.|+|||+...+
T Consensus 1017 ~~~f~~~f~~~~~~f~~~~~~l~-~~~~~l~~--------~~~~~-----------~~~--~~~~~~~~~~~~~~~~ 1071 (1164)
T TIGR02169 1017 REVFMEAFEAINENFNEIFAELS-GGTGELIL--------ENPDD-----------PFA--GGLELSAKPKGKPVQR 1071 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEe--------cCCCC-----------ccc--CCeEEEEEcCCCCCCc
Confidence 99999999999999999999999 99999999 44443 233 9999999999997654
No 5
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.6e-81 Score=672.38 Aligned_cols=1028 Identities=22% Similarity=0.348 Sum_probs=650.8
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc-cccccchhhhhhhhccCCCCcceEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLRSEDRHALLHEGAGHQVLSAFVE 79 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~~~~~~~~i~~g~~~~~~~a~v~ 79 (1099)
|+|+.|.|.|||||+-+|++.+|+|.+|+|+|-||||||||||+|.||||- +....|.+.+.|+||.+...+...|.|+
T Consensus 1 M~IkeiiLDGFKSYa~rTvI~~fDp~FNAITGlNGSGKSNILDsICFvLGI~nl~~VRA~nlqeLIyk~GQAGiTkAsVs 80 (1174)
T KOG0933|consen 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDSICFVLGITNLSQVRASNLQELIYKNGQAGITKASVS 80 (1174)
T ss_pred CchhhhhhcchhcceeeeeccCCCcccchhhcCCCCCchHHHHHHHHHHccchHHHHHHHHHHHHHHhcCcccceeEEEE
Confidence 999999999999999999998899999999999999999999999999999 8888999999999999887778899999
Q ss_pred EEEeCCCCCC-CCC---CccEEEEEEe-ecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHH
Q 001328 80 IVFDNSDNRI-PVD---KEEVRLRRTI-GLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSE 154 (1099)
Q Consensus 80 ~~f~~~~~~~-~~~---~~~~~i~R~~-~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~ 154 (1099)
|+|||++..- |++ .++|+|+|.+ -.|.+.|+|||+.+....+.+||.+.|+.++||.|+|+||+|..+++|+|.+
T Consensus 81 VvFdNtdk~~SP~G~E~h~EIsVtRqIv~gG~~KylINGh~a~~~~vq~lF~SVqLNvNNP~FLIMQGrITkVLNMKp~E 160 (1174)
T KOG0933|consen 81 VVFDNTDKARSPLGYEHHDEISVTRQIVVGGTNKYLINGHLAQNSKVQDLFCSVQLNVNNPHFLIMQGRITKVLNMKPSE 160 (1174)
T ss_pred EEecCCCcccCCCCcccCCeeEEEEEEEecCceeEEEcCeeCchhHHHHHHHHhcccCCCCceEEecccchhhhcCCcHH
Confidence 9999999764 543 4589999999 5667889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 155 RLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVVK-YLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELH 233 (1099)
Q Consensus 155 ~~~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 233 (1099)
.+.++++++|+..|..+++.+.+.+..-..++.++...+. ++.-.+..|+.+...+-+|......+..+.......++-
T Consensus 161 ILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~ 240 (1174)
T KOG0933|consen 161 ILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRICIAYEYL 240 (1174)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986 888999999999988888886666665555444444544
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Q 001328 234 DARQKLLEVDDTRTRFSDESAKMYNSLLDAQEKSKDSDKRFKDLMKEVQ-TLNKEKEAIEKRLTEAIKNQTAFELDVKDI 312 (1099)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 312 (1099)
........+...+......+..+...+......+..++.++..+..+.. ++......|..++..+...+.+....+...
T Consensus 241 ~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~ 320 (1174)
T KOG0933|consen 241 QAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLK 320 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555555555555554333 234455667777777777777777777777
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHH
Q 001328 313 QERISGNSQARDDAKKQLRSLLEEIDDSSKELDKANTLYENKCIEEKKITKDIMEREKQLSILYQKQGRATQFSSKDARD 392 (1099)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (1099)
...+.......+.+...+......+......+......+..+.+........+...+..++.+..-...-.. .-
T Consensus 321 ~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~------~e 394 (1174)
T KOG0933|consen 321 KETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNED------EE 394 (1174)
T ss_pred HHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc------ch
Confidence 777777777777777777777777777777777777777777777777777777777777766655444322 11
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHH---HHH
Q 001328 393 KWLQKEIDDLERVHSSNLKQDQKLQEEIQRLKGDLKERDEYIESRKREIAYLESSISQSREGFNNHKTQRDKMQ---DER 469 (1099)
Q Consensus 393 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~ 469 (1099)
..+..++......+......+....-.++.+..++...+.+..............+..+..+.+.++.++..+. ...
T Consensus 395 ~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~ 474 (1174)
T KOG0933|consen 395 KTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQE 474 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchH
Confidence 22233333333333333333333333333333332222222222222222222222222222211211211111 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcchHHhHHHHHHHHHHcCCCcccccccccccc-chhhHHHHHHhhcc
Q 001328 470 KSLWVKESELCAEIDKLKAEVEKAEKSLDHATPGDVRRGLNSIRRICREYKIDGVYGPIIELLDC-DEKFFTAVEVTAGN 548 (1099)
Q Consensus 470 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~~aie~~l~~ 548 (1099)
..+.+....+...+..+...+..+...+. .++-.|... . .......+.|.|+.+|.| +..|.+|++.++|+
T Consensus 475 e~l~q~~~~l~~~~~~lk~~~~~l~a~~~-~~~f~Y~dP---~----~nfdrs~V~G~Va~Li~vkd~~~~tAle~~aGg 546 (1174)
T KOG0933|consen 475 EALKQRRAKLHEDIGRLKDELDRLLARLA-NYEFTYQDP---E----PNFDRSKVKGLVAKLIKVKDRSYATALETTAGG 546 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccCCC---C----ccchHHHHHHHHHHHheeCcchHHHHHHHHhcC
Confidence 11222222233333333333333333322 111111100 0 000013477889999998 56789999999999
Q ss_pred CcceEEecCchHHHHHHHHHhhcCCCeeEEEeCCCCCCCCCCC--------CCcccccccccccccCcchHHHHHHhccC
Q 001328 549 SLFHVVVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKAPRVTY--------PKSNDVIPLLDRLEFSPNFKPAFAQVFAR 620 (1099)
Q Consensus 549 ~l~~~vv~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 620 (1099)
.++++||++..+++.+++- ..-..|+|++|++.+....++. ..+.++...+++|.|++.+.+++.++||+
T Consensus 547 rLynvVv~te~tgkqLLq~--g~l~rRvTiIPLnKI~s~~~s~~v~~~ak~v~~~~v~~al~Li~yd~~l~~amefvFG~ 624 (1174)
T KOG0933|consen 547 RLYNVVVDTEDTGKQLLQR--GNLRRRVTIIPLNKIQSFVLSPNVLQAAKNVGNDNVELALSLIGYDDELKKAMEFVFGS 624 (1174)
T ss_pred cceeEEeechHHHHHHhhc--ccccceeEEEechhhhhccCCHhHHHHHHHhcCchHHHHHHHhcCCHHHHHHHHHHhCc
Confidence 9999999999999988762 2334689999999988765542 12344445569999999999999999999
Q ss_pred eEEecChHHHHHHHHhcCCc--EEecCCCcccCCcceecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 001328 621 TVICRDLDVCTRVARTDGLD--CITLEGDQVSKKGGMTGGFYDYRRSKLKFMNIIMRNTKTINAREEEVEKLISQ----- 693 (1099)
Q Consensus 621 ~~~~~~~~~a~~~~~~~~~~--~vt~~g~~~~~~g~~~g~~~~~~~~~~~~~~~l~~l~~~~~~l~~~l~~~~~~----- 693 (1099)
++||++.+.|..++..+.++ .||++|+++.|.|.++||+.+...+++.....+...+.++...+.++..+...
T Consensus 625 tlVc~~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le 704 (1174)
T KOG0933|consen 625 TLVCDSLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSLE 704 (1174)
T ss_pred eEEecCHHHHHHhhcccccccceeeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876554 49999999999999999998877777766666666666666666666662222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 694 -LDQKITEHVTEQQKTDAKRAHDKS-----ELEQLKQDIANANKQKQIISKALENKEKSLADVRTQLDQLEASMAMKQAE 767 (1099)
Q Consensus 694 -l~~~l~~~~~~~~~l~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~ 767 (1099)
.......+..++.-....+.-+.. ....+..++..+...+..++.++......+......+..++..+.++...
T Consensus 705 ~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~ 784 (1174)
T KOG0933|consen 705 AQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKAN 784 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 111222222222222222222211 11222233344444444444444444444444444444444444444333
Q ss_pred hchhhhhhCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 001328 768 MNTDLIDHLSLDEKNLLSRLNPEITELKEKLITCRTDRIEYETRKAELETNLTTNLMRRKQELEALISSAENDVMLSEAE 847 (1099)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 847 (1099)
.+ .++..+..++..+...+++..............+..+. +.+...+...+..+...... +.
T Consensus 785 re------------~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~-e~l~~e~~~~k~~l~~~~~~-----~~ 846 (1174)
T KOG0933|consen 785 RE------------RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEH-EELEKEISSLKQQLEQLEKQ-----IS 846 (1174)
T ss_pred hH------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-----HH
Confidence 22 34445555555444444444444443333333333322 22222222222222211111 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 848 SKKQELADAKSFVEDARQELKRVSDSIVQLTKELNKIKDEKTKLKTLEDNYERKLQDDARELEQLLSRRNILLAKQEEYS 927 (1099)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1099)
.+..++..+...+............++......+.....++..+.........+.....-.+..+......+...-....
T Consensus 847 ~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~ 926 (1174)
T KOG0933|consen 847 SLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANAR 926 (1174)
T ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHH
Confidence 22222222222222222222222222222222222222111111111111111111111122222222222222222222
Q ss_pred HHHHh----cCCCChhh--hh------hhccCCHHHHHHHHHHHHHHhccC-ccCcHHHHHHHHhHHHHHHHHHHHHHHH
Q 001328 928 KKIRE----LGPLSSDA--FD------TYKRKGVKELLKMLHRCNEQLQQF-SHVNKKALDQYVNFTEQREELQRRQAEL 994 (1099)
Q Consensus 928 ~~l~~----~~~~~~~~--~~------~~~~~~~~~l~~~l~~l~~~l~~l-~~vn~~a~ee~~~~~~~~~~l~~q~~dl 994 (1099)
..+.. +.|++++. |+ +|...+......++..|+.....+ ..||+.+..-++....++..+...++.+
T Consensus 927 k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~I 1006 (1174)
T KOG0933|consen 927 KEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEII 1006 (1174)
T ss_pred HHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 23333221 11 122356777888888888888877 4699999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEEeeccCCCCCCCCCCCCCCCCccCCcccccc
Q 001328 995 DAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHGDDDDDDGPRESDVEGRVEKYI 1074 (1099)
Q Consensus 995 ~~~~~~l~~~i~~l~~~~~~~~~~~f~~in~~f~~~f~~lf~gG~a~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1099)
+.....|.+.|..+|....+.+..+|..||..|..||..|.||..|.|+. |... .+. .
T Consensus 1007 e~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs~LLPga~AkL~P----------peg~----------~~~--d 1064 (1174)
T KOG0933|consen 1007 EKDKSKIKKTIEKLDEKKREELNKAWEKVNKDFGSIFSTLLPGAMAKLEP----------PEGK----------TVL--D 1064 (1174)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCccccccC----------CCCC----------ccc--c
Confidence 99999999999999999999999999999999999999999999999977 1111 123 7
Q ss_pred ceEEEEecCC
Q 001328 1075 GVKVKACTSV 1084 (1099)
Q Consensus 1075 Gi~i~~~ppg 1084 (1099)
|.+|.|.+.|
T Consensus 1065 GLEvkV~~G~ 1074 (1174)
T KOG0933|consen 1065 GLEVKVKFGG 1074 (1174)
T ss_pred ceEEEEEeCc
Confidence 9999999864
No 6
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.8e-76 Score=636.83 Aligned_cols=1012 Identities=20% Similarity=0.295 Sum_probs=628.1
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|+|..|+|.|||||.+.++++||. .+|+|+|||||||||+||||.||||..++++|+....|+|| |.+ ..|-|++
T Consensus 2 g~L~~lEieNFKSYkGh~~iGPF~-~FTaIIGPNGSGKSNlMDAISFVLGekss~LR~~~lkdLIy-g~~---i~~~v~l 76 (1141)
T KOG0018|consen 2 GRLLTLEIENFKSYKGHQVIGPFD-RFTAIIGPNGSGKSNLMDAISFVLGEKSSHLRVSHLKDLIY-GKP---IRKPVTL 76 (1141)
T ss_pred CceeeeehhccccccCceeecCch-hceeeeCCCCCchHHHHHHHHHHhcCCCcccccchHHHHhc-CCc---cCCchhh
Confidence 689999999999999999999888 79999999999999999999999999999999999999999 443 2455667
Q ss_pred EEeCCCCCCCCCCccEEEEEEeecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHHHHHH
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLK 160 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~~~le 160 (1099)
.|.-+ +|....++|.+..|.++|.|||..|+..++...+...||-.....|++.||.|..+...+|.++-.+|+
T Consensus 77 ~Y~~~------dg~~~~F~R~I~~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQGdVE~IA~k~PkElt~LFE 150 (1141)
T KOG0018|consen 77 KYEEG------DGETRRFTRAINGGTSEYMIDNEIVTREEYLEELEKINILVKARNFLVFQGDVEKIAGKNPKELTALFE 150 (1141)
T ss_pred eeecC------CchhhhhhhhhcCCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEEecChHHHHhccCHHHHHHHHH
Confidence 77655 345568899888889999999999999999999999999877778999999999999999999999999
Q ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 161 EIGGTRVYEERRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARQKLL 240 (1099)
Q Consensus 161 e~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 240 (1099)
+++|...|+..+++....+................+..+....+.+...+..|..+..+........+..++..++..+.
T Consensus 151 EISgSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~ 230 (1141)
T KOG0018|consen 151 EISGSIELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIE 230 (1141)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHh
Confidence 99999999999888888888888877777777778888888888888888888888888877777666677777777777
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHhcch
Q 001328 241 EVDDTRTRFSDESAKMYNSLLDAQEKSKDSDKRFKDLMKEVQTLNKEKEAIEKRLTEAIKNQTAFELDVKDIQERISGNS 320 (1099)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1099)
.+...+..+...+..+....+.....+.....+......++......+...+..+.. ...+-...........++....
T Consensus 231 k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~ 309 (1141)
T KOG0018|consen 231 KANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIE 309 (1141)
T ss_pred hhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhh
Confidence 777777777766666666666666666555555555555555555555544444443 2122222222222223333332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcccccccCCHHHHHHHHH
Q 001328 321 QARDDAKKQLRSLLEEIDDSSKELDKANTLYENKCIEEKKITK----DIMEREKQLSILYQKQGRATQFSSKDARDKWLQ 396 (1099)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1099)
..+...+.........++.++.++..+.........++..... .+.-....+.+...-.. .+... ..
T Consensus 310 k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~--------ea~~~-~~ 380 (1141)
T KOG0018|consen 310 KDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKE--------EACKE-AL 380 (1141)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHH--------HHhhh-hH
Confidence 2232222233323333333222222222222222222211111 00000001100000000 00000 02
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHH
Q 001328 397 KEIDDLERVHSSNLKQDQKLQEEIQRLKGDLKERDEYIESRKREIAYLESSISQSREGFNNHKTQRDKMQDERKSLWVKE 476 (1099)
Q Consensus 397 ~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1099)
.++.-++.....-+..+.........++.....+..++.........+...+..+......+...+..+...+.....+.
T Consensus 381 ~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~ 460 (1141)
T KOG0018|consen 381 EELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEP 460 (1141)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhH
Confidence 22222333333333333333333333444444444444444444444444444444444444444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh-CCcchHHhHHHHHHHHHHcCCCccccccccccccc-hhhHHHHHHhhccCcceEE
Q 001328 477 SELCAEIDKLKAEVEKAEKSLDHA-TPGDVRRGLNSIRRICREYKIDGVYGPIIELLDCD-EKFFTAVEVTAGNSLFHVV 554 (1099)
Q Consensus 477 ~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~aie~~l~~~l~~~v 554 (1099)
..+..++.....++..+....... -......++..++.| +||++|.++|++... ..|..|+.+++|...+.|+
T Consensus 461 ~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr~-----fPgv~GrviDLc~pt~kkyeiAvt~~Lgk~~daIi 535 (1141)
T KOG0018|consen 461 YELNEELVEVLDQLLDASADRHEGSRRSRKQEAVEALKRL-----FPGVYGRVIDLCQPTQKKYEIAVTVVLGKNMDAII 535 (1141)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHh-----CCCccchhhhcccccHHHHHHHHHHHHhcccceEE
Confidence 555555555555544443333211 111133444555555 499999999999986 7899999999999999999
Q ss_pred ecCchHHHHHHHHHhhcCCCeeEEEeCCCCCCCCCC--CCCcccccccccccccCcchHHHHHHhccCeEEecChHHHHH
Q 001328 555 VDNDETSTKIIRHLNSLKGGRVTFIPLNRVKAPRVT--YPKSNDVIPLLDRLEFSPNFKPAFAQVFARTVICRDLDVCTR 632 (1099)
Q Consensus 555 v~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~a~~ 632 (1099)
|++..+|..||.|++..+.+..||+|++.+...++. ++.+.|+.-+.|.|.|+|.+..++.++||+++||++++.|..
T Consensus 536 Vdte~ta~~CI~ylKeqr~~~~TFlPld~i~v~~~~e~lr~~~g~rlv~Dvi~ye~e~eka~~~a~gn~Lvcds~e~Ar~ 615 (1141)
T KOG0018|consen 536 VDTEATARDCIQYLKEQRLEPMTFLPLDSIRVKPVNEKLRELGGVRLVIDVINYEPEYEKAVQFACGNALVCDSVEDARD 615 (1141)
T ss_pred eccHHHHHHHHHHHHHhccCCccccchhhhhcCcccccccCcCCeEEEEEecCCCHHHHHHHHHHhccceecCCHHHHHH
Confidence 999999999999999999999999999998876654 455567666779999999999999999999999999999999
Q ss_pred HHHh--cCCcEEecCCCcccCCcceecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q 001328 633 VART--DGLDCITLEGDQVSKKGGMTGGFYDYRRSKLKFMNIIMRNTKTINAREEEVEKLISQ------LDQKITEHVTE 704 (1099)
Q Consensus 633 ~~~~--~~~~~vt~~g~~~~~~g~~~g~~~~~~~~~~~~~~~l~~l~~~~~~l~~~l~~~~~~------l~~~l~~~~~~ 704 (1099)
+++. .++++||+||.++..+|.|+||+.+. . +. ...+..|...-..+..++..+... ....+..++..
T Consensus 616 l~y~~~~r~k~valdGtl~~ksGlmsGG~s~~--~-wd-ek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~ 691 (1141)
T KOG0018|consen 616 LAYGGEIRFKVVALDGTLIHKSGLMSGGSSGA--K-WD-EKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMR 691 (1141)
T ss_pred hhhcccccceEEEeeeeEEeccceecCCccCC--C-cC-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9985 45789999999999999999998751 1 21 223444444444444444443322 33344444444
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhCCHHHHHHH
Q 001328 705 QQKTDAKRAHDKSELEQLKQDIANANKQKQIISKALENKEKSLADVRTQLDQLEASMAMKQAEMNTDLIDHLSLDEKNLL 784 (1099)
Q Consensus 705 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 784 (1099)
+.....++..+...+.....++......+......+..+...+...+..+..++.++..+...+-..++..+... +
T Consensus 692 ~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~----i 767 (1141)
T KOG0018|consen 692 LKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVR----I 767 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCee----e
Confidence 444444444444445555555555555555555555566666666666666666666666666555454433322 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 001328 785 SRLNPEITELKEKLITCRTDRIEYETRKAELETNLT----TNLMRRKQELEALISSAENDVMLSEAESKKQELADAKSFV 860 (1099)
Q Consensus 785 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1099)
...++... .++....+.+++.++..+..++. .....++..++..+..++.. ++.+...-..+...+
T Consensus 768 r~Yee~~~-----~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~-----~~~~~~~e~~~~k~i 837 (1141)
T KOG0018|consen 768 REYEEREL-----QQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKE-----IEGLKKDEEAAEKII 837 (1141)
T ss_pred ehHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHh-----HHhhHHHHHHHHHHH
Confidence 12111111 22233334444444554544442 12222333333333322222 222222212222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhc-----
Q 001328 861 EDARQELKRVSDSIVQLTKELNKIKDEKTKLKTLEDNYERKLQDDARELEQLLSRRNILLAKQEEYSK--KIREL----- 933 (1099)
Q Consensus 861 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~----- 933 (1099)
.++ .++.. .. .+.....+.++.........+..++..+...+..++..+.++..++..+-. ++.++
T Consensus 838 ~e~-~~~e~-----k~-k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~ 910 (1141)
T KOG0018|consen 838 AEI-EELEK-----KN-KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKLEDIEVPLS 910 (1141)
T ss_pred hhH-HHHHH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhcccccccc
Confidence 211 11110 00 111222222222222222223333333322222222222222222222111 11111
Q ss_pred CCCChhhh----hhhcc-CCHHHHHHHHHHHHHHhccCccCcHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001328 934 GPLSSDAF----DTYKR-KGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVL 1008 (1099)
Q Consensus 934 ~~~~~~~~----~~~~~-~~~~~l~~~l~~l~~~l~~l~~vn~~a~ee~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l 1008 (1099)
+..++++. -.|+. +.--.|+.+|++.+..|+.+ .+|++|++.|+.+. +.......+...+..+.+.+....+
T Consensus 911 ~gs~~d~~~~ieidy~~L~~~y~L~~kl~e~~~~l~~~-~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F~~V 987 (1141)
T KOG0018|consen 911 SGSMDDIVIGIEIDYSGLPREYKLQQKLEEKQSVLNRI-APNLKALERLDEVR--FQEINEEFEAARKEAKKAKNAFNKV 987 (1141)
T ss_pred CCCccccceecccccccccHHHHHHHHHHHHHHHHHHh-CcchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111110 01222 11123999999999999999 99999999999987 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CceEEEEEeeccCCCCCCCCCCCCCCCCccCCccccccceEEEEecCCCcc
Q 001328 1009 DQRKDESIERTFKGVARHFREVFSELVQ-GGHGHLVMMKKKDGDHGDDDDDDGPRESDVEGRVEKYIGVKVKACTSVKMN 1087 (1099)
Q Consensus 1009 ~~~~~~~~~~~f~~in~~f~~~f~~lf~-gG~a~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~i~~~ppgk~~ 1087 (1099)
.++...+|+.+|+.|+.++..||+.|++ -|.|+|.+ .++|+ |+. .||.+.+.|||||-
T Consensus 988 K~~R~~~F~~~F~~va~~Id~IYK~Ltnt~g~AyL~~--------en~~E---Pyl----------~GIky~~~pP~KRF 1046 (1141)
T KOG0018|consen 988 KKKRYERFMACFEHVADNIDRIYKELTNTEGQAYLGL--------ENPEE---PYL----------DGIKYHCMPPGKRF 1046 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeecC--------CCCCc---chh----------cCccccccCCcccc
Confidence 9999999999999999999999999985 48999988 44443 555 89999999999983
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=100.00 E-value=2.9e-72 Score=723.10 Aligned_cols=1032 Identities=23% Similarity=0.367 Sum_probs=570.4
Q ss_pred eeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc-cccccchhhhhhhhccCCC--CcceEEEE
Q 001328 2 HIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLRSEDRHALLHEGAG--HQVLSAFV 78 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~~~~~~~~i~~g~~--~~~~~a~v 78 (1099)
+|++|.|.||+||.+.+.+ +|+||+|+|+|||||||||||+||.||||+ ++..+|+.++.++||.|.. ++...|+|
T Consensus 1 ~i~~l~~~nf~s~~~~~~i-~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~~~~~~~v 79 (1179)
T TIGR02168 1 RLKKLELAGFKSFADPTTI-NFDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRKPLSLAEV 79 (1179)
T ss_pred CeeEEEEeCccccCCCeeE-EecCCcEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccCCCCeeEE
Confidence 6899999999999988778 699999999999999999999999999999 5677888889999999885 35568999
Q ss_pred EEEEeCCCCCCCC-CCccEEEEEEee-cCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHH
Q 001328 79 EIVFDNSDNRIPV-DKEEVRLRRTIG-LKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERL 156 (1099)
Q Consensus 79 ~~~f~~~~~~~~~-~~~~~~i~R~~~-~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~ 156 (1099)
+++|.++++.+|. ++..++|.|.+. .|.+.|++||.+++..++..+|..+|++.. .|+|++||+|..|+.++|.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~-~~~~~~q~~~~~~~~~~~~~~~ 158 (1179)
T TIGR02168 80 ELVFDNSDGLLPGADYSEISITRRLYRDGESEYFINGQPCRLKDIQDLFLDTGLGKR-SYSIIEQGKISEIIEAKPEERR 158 (1179)
T ss_pred EEEEecCCCCCCCCCCCeEEEEEEEeeCCCceeeECCCcccHHHHHHHHhccCCCcc-cchheecccHHHHHcCCHHHHH
Confidence 9999987776663 678899999994 467889999999999999999999999974 4789999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 157 DLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDAR 236 (1099)
Q Consensus 157 ~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 236 (1099)
.+|++++|+..|..++..+ ..++.++.+.+.++..++.+|..+.+.+..|..+..++..++......++..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~t-------~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~ 231 (1179)
T TIGR02168 159 AIFEEAAGISKYKERRKET-------ERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLV 231 (1179)
T ss_pred HHHHHHccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998765554 455666667777777777777777777777777777777766666555566555
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 001328 237 QKLLEVDDTRTRFSDESAKMYNSLLDAQEKSKDSDKRFKDLMKEVQTLNKEKEAIEKRLTEAIKNQTAFELDVKDIQERI 316 (1099)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1099)
..+..+...+..+...+......+..+...+..+...+..+...+..+...+..+...+..+...+..+..++..+...+
T Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~ 311 (1179)
T TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66666665555555555555555555555555555454444444444444444444444444444444444444444444
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHH
Q 001328 317 SGNSQARDDAKKQLRSLLEEIDDSSKELDKANTLYENKCIEEKKITKDIMEREKQLSILYQKQGRATQFSSKDARDKWLQ 396 (1099)
Q Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1099)
..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+......+ ......+.
T Consensus 312 ~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~l~ 385 (1179)
T TIGR02168 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL------EEQLETLR 385 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 444444444444444444444444433333333333333333333333333333322222221111 11112222
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHH
Q 001328 397 KEIDDLERVHSSNLKQDQKLQEEIQRLKGDLKERDEYIESR-----KREIAYLESSISQSREGFNNHKTQRDKMQDERKS 471 (1099)
Q Consensus 397 ~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1099)
.++..+...+..+...+..+...+..+...+..+...+..+ ...+..+...+..+...+..+...+..+...+..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 465 (1179)
T TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE 465 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222222222222222222222222222 2222333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh------hhCCcchHHhHHHHHHHHH-HcCCCccccccccccccchhhHHHHHH
Q 001328 472 LWVKESELCAEIDKLKAEVEKAEKSLD------HATPGDVRRGLNSIRRICR-EYKIDGVYGPIIELLDCDEKFFTAVEV 544 (1099)
Q Consensus 472 ~~~~~~~~~~~l~~l~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~~~aie~ 544 (1099)
+...+..+...+..+...+..+..... .... ..... +..+.. ..+++|++|.+.+++.+++.|..++..
T Consensus 466 l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~-~~~~~---v~~~i~v~~~~~~~~g~~~~li~~~~~~~~a~~~ 541 (1179)
T TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLERLQENLE-GFSEG---VKALLKNQSGLSGILGVLSELISVDEGYEAAIEA 541 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhH---HHHHHhcccccCCCccchhceeeeChhHHHHHHH
Confidence 333333333333333322222211100 0000 01111 222221 122467888999999998999999999
Q ss_pred hhccCcceEEecCchHHHHHHHHHhhcCCCeeEEEeCCCCCCCCCC------CCCccc-ccccccccccCcchHHHHHHh
Q 001328 545 TAGNSLFHVVVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKAPRVT------YPKSND-VIPLLDRLEFSPNFKPAFAQV 617 (1099)
Q Consensus 545 ~l~~~l~~~vv~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~~~~~------~~~~~~-~~~~~~~i~~~~~~~~~~~~~ 617 (1099)
.+|+.+..+||++...|..++.+++....|+++|+|++.+..+... .+...+ +..+.+++.+++.+..++...
T Consensus 542 ~~g~~~~~ivv~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~ 621 (1179)
T TIGR02168 542 ALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYL 621 (1179)
T ss_pred HHHHHhcCeEECCHHHHHHHHHHhcccCCCcEEEeeccccccccccccchhhccccCchhHHHHHHhcccHhHHHHHHHH
Confidence 9998888899999999999999999889999999999887654221 111112 222236677777788877778
Q ss_pred ccCeEEecChHHHHHHHHh--cCCcEEecCCCcccCCcceecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 618 FARTVICRDLDVCTRVART--DGLDCITLEGDQVSKKGGMTGGFYDYRRSKLKFMNIIMRNTKTINAREEEVEKLISQLD 695 (1099)
Q Consensus 618 l~~~~~~~~~~~a~~~~~~--~~~~~vt~~g~~~~~~g~~~g~~~~~~~~~~~~~~~l~~l~~~~~~l~~~l~~~~~~l~ 695 (1099)
+|.+.+|.+++.|...... ....+|+++|.++..+|.++|+.......+..+..++..+...+..+...+.. +.
T Consensus 622 ~~~~~ivt~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~~~~~~~~~~~~~~l~~e~~~l~~~~~~l~~~l~~----~~ 697 (1179)
T TIGR02168 622 LGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAE----LE 697 (1179)
T ss_pred hCCceEeCCHHHHHHHHHHcCCCceEEecCCEEEcCCceEecCccccccchhhHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 8888889999999888765 35678999998777777665554222233344445555556556555555555 33
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001328 696 QKITEHVTEQQKTDAKRAHDKSELEQLK-------QDIANANKQKQIISKALENKEKSLADVRTQLDQLEASMAMKQAEM 768 (1099)
Q Consensus 696 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~ 768 (1099)
..+..+...+..+...+..+...+..+. ..+..+...+..+...+..+...+..+..++..+...+..+...+
T Consensus 698 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 777 (1179)
T TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333 333333333333333333333333333333333333222222222
Q ss_pred chhhhhhCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hhhhhH
Q 001328 769 NTDLIDHLSLDEKNLLSRLNPEITELKEKLITCRTDRIEYETRKAELETNLTTNLMRRKQELEALISSAEND--VMLSEA 846 (1099)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~--~~~~~~ 846 (1099)
...... +. .....+..+...+..+...+..+......+...+..+...+ ..+...+..+..++..+... .+...+
T Consensus 778 ~~l~~~-~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~l~~~~~~l~~~~~~~~~~l~~~~~~~ 854 (1179)
T TIGR02168 778 AEAEAE-IE-ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL-ESLERRIAATERRLEDLEEQIEELSEDI 854 (1179)
T ss_pred HHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110000 00 00111122222222222222222222222222222222222 11222222222222222111 001112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 847 ESKKQELADAKSFVEDARQELKRVSDSIVQLTKELNKIKDEKTKLKTLEDNYERKLQDDARELEQLLSRRNILLAKQEEY 926 (1099)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1099)
..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+..++..+......+...+..+
T Consensus 855 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l 934 (1179)
T TIGR02168 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934 (1179)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHhc-C------CCChhhhhhhccCCHHHHHHHHHHHHHHhccCccCcHHHHHHHHhHH----HHHHHHHHHHHHHH
Q 001328 927 SKKIREL-G------PLSSDAFDTYKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFT----EQREELQRRQAELD 995 (1099)
Q Consensus 927 ~~~l~~~-~------~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~vn~~a~ee~~~~~----~~~~~l~~q~~dl~ 995 (1099)
...+.+. . ..+........ . .+..++..++.+|..+|+ |+++|..+. ++|.++..|++||.
T Consensus 935 ~~~l~e~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~~i~~lg~----aiee~~~~~~~a~er~~~l~~q~~dL~ 1006 (1179)
T TIGR02168 935 EVRIDNLQERLSEEYSLTLEEAEALE--N--KIEDDEEEARRRLKRLEN----KIKELGPVNLAAIEEYEELKERYDFLT 1006 (1179)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHhhc--c--ccccCHHHHHHHHHHHHH----HHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3333321 0 11110000000 0 023455666666666666 777777666 78888888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhc----CCceEEEEEeeccCCCCCCCCCCCCCCCCccCC
Q 001328 996 AGDEKIKELISVLDQRKDESI---ERTFKGVARHFREVFSELV----QGGHGHLVMMKKKDGDHGDDDDDDGPRESDVEG 1068 (1099)
Q Consensus 996 ~~~~~l~~~i~~l~~~~~~~~---~~~f~~in~~f~~~f~~lf----~gG~a~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1099)
.++..|...|.+++..+...| ..+|..||.+|+.+|+.|| +||.|+|.| .|+++
T Consensus 1007 ~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~~~~~~~~~~~--------~~~~~----------- 1067 (1179)
T TIGR02168 1007 AQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKLFGGGEAELRL--------TDPED----------- 1067 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe--------CCCCc-----------
Confidence 888888888888888888888 8888888888888777776 599999999 44333
Q ss_pred ccccccceEEEEecCCCccc
Q 001328 1069 RVEKYIGVKVKACTSVKMNS 1088 (1099)
Q Consensus 1069 ~~~~~~Gi~i~~~ppgk~~~ 1088 (1099)
+++ .||.|+|.|||+++.
T Consensus 1068 ~~~--~~~~~~~~~~~~~~~ 1085 (1179)
T TIGR02168 1068 LLE--AGIEIFAQPPGKKNQ 1085 (1179)
T ss_pred ccc--cCceEEEeCCCCccc
Confidence 223 999999999998754
No 8
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=100.00 E-value=2.8e-46 Score=411.70 Aligned_cols=573 Identities=19% Similarity=0.301 Sum_probs=345.7
Q ss_pred eeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccc-cchhhhhhhhccCCCCcceEEEEEE
Q 001328 2 HIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQN-LRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~-~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
+|.+|+|.||+|+.... | .|+|.+|+|+||||||||.||.||..+||+.++. =||+++.|+|..|+. +|.|.|
T Consensus 41 ~I~sI~L~NFMCHsnL~-I-eFg~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK~G~~----~A~IsI 114 (1074)
T KOG0250|consen 41 KIESIHLTNFMCHSNLL-I-EFGPRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIKDGCS----SAKISI 114 (1074)
T ss_pred eEEEEEEeeecccccce-e-ccCCCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHhCCCc----ceEEEE
Confidence 58999999999999884 5 3999999999999999999999999999995444 489999999999997 899999
Q ss_pred EEeCCCCC-CC--CCCccEEEEEEeecCCCeEEe----CCeec--CHHHHHHHHHHcCCCCCCCceeecCchHhHhh-cC
Q 001328 81 VFDNSDNR-IP--VDKEEVRLRRTIGLKKDEYFL----DGKHI--TKTEVMNLLESAGFSRSNPYYVVQQGKIASLT-LM 150 (1099)
Q Consensus 81 ~f~~~~~~-~~--~~~~~~~i~R~~~~~~~~~~i----n~~~~--~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~-~~ 150 (1099)
++.|+|.. |+ ++|+.|+|.|+++..+|.|++ +|+.| +..|+..++..+||...||++|++|..-.+|+ ++
T Consensus 115 tL~N~G~~Afk~eiyG~~IiIER~I~~~~S~~~~~~~~~grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~~~ 194 (1074)
T KOG0250|consen 115 TLSNSGLDAFKPEIYGNSIIIERTIRRSSSTYYLLRSANGRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLANS 194 (1074)
T ss_pred EEecCCcccCChhhcCCeeEEEEeeccccchHHHHhhccCccccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHhcC
Confidence 99998854 54 789999999999777776654 56666 77899999999999999999999999999866 78
Q ss_pred CHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 151 KDSERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDK 230 (1099)
Q Consensus 151 ~~~~~~~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 230 (1099)
+|.+.+.+|..++.+.....-.......+..+...+......+..+..++...+......+....+...+..+.....+.
T Consensus 195 ~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~ 274 (1074)
T KOG0250|consen 195 NPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWA 274 (1074)
T ss_pred ChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988888777777777777777777777777777777777777777776666666666666666555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Q 001328 231 ELHDARQKLLEVDDTRTRFSDESAKMYNSLLDAQEKSKDSDKRFKDLMKEVQTLNKEKEAIEKRLTEAIKNQTAFELDVK 310 (1099)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 310 (1099)
.+.....++..+...+...+.....+...+......+..+...+...+.++..+. ........++
T Consensus 275 ~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~--------------~e~~~~d~Ei- 339 (1074)
T KOG0250|consen 275 WVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELK--------------DEVDAQDEEI- 339 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH--------------HhhhhhhHHH-
Confidence 5555555555555544444433333333332222222222222222222221111 1111111111
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHH
Q 001328 311 DIQERISGNSQARDDAKKQLRSLLEEIDDSSKELDKANTLYENKCIEEKKITKDIMEREKQLSILYQKQGRATQFSSKDA 390 (1099)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1099)
..+.+.+..+..+..+++..+......+..+......+...+..++.+..
T Consensus 340 -------------~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~----------------- 389 (1074)
T KOG0250|consen 340 -------------EEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTN----------------- 389 (1074)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 11111111122222222222222222222222222222222221111110
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHH
Q 001328 391 RDKWLQKEIDDLERVHSSNLKQDQKLQEEIQRLKGDLKERDEYIESRKREIAYLESSISQSREGFNNHKTQRDKMQDERK 470 (1099)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1099)
..+..++.+.+.++..+..++..++..+..+..++..+...+..... +.........
T Consensus 390 ----------------~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~e-------e~~~i~~~i~ 446 (1074)
T KOG0250|consen 390 ----------------NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEE-------EKEHIEGEIL 446 (1074)
T ss_pred ----------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHH
Confidence 22222222333333333333333333333333333333332222222 2222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcchHHhHHHHHHHHHHcCCCcccccccccccc-chhhHHHHHHhhccC
Q 001328 471 SLWVKESELCAEIDKLKAEVEKAEKSLDHATPGDVRRGLNSIRRICREYKIDGVYGPIIELLDC-DEKFFTAVEVTAGNS 549 (1099)
Q Consensus 471 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~~aie~~l~~~ 549 (1099)
.+...+......+..+..-..+.. ..+++.++..+.++.+-..... ..+.||++..+.+ +++|..+|+.++|+.
T Consensus 447 ~l~k~i~~~~~~l~~lk~~k~dkv----s~FG~~m~~lL~~I~r~~~~f~-~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~ 521 (1074)
T KOG0250|consen 447 QLRKKIENISEELKDLKKTKTDKV----SAFGPNMPQLLRAIERRKRRFQ-TPPKGPLGKYVTLKEPKWALAIERCLGNL 521 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhcccchh----hhcchhhHHHHHHHHHHHhcCC-CCCCCCccceeEecCcHHHHHHHHHHHHh
Confidence 333333333333333322211111 2344556666555544332222 4578899999886 678999999999999
Q ss_pred cceEEecCchHHHHHHHHHhhcCCC--eeEEEe--CCCCCCCCCCCCCccccccccccccc-CcchHHHHHHhcc--CeE
Q 001328 550 LFHVVVDNDETSTKIIRHLNSLKGG--RVTFIP--LNRVKAPRVTYPKSNDVIPLLDRLEF-SPNFKPAFAQVFA--RTV 622 (1099)
Q Consensus 550 l~~~vv~~~~~a~~~~~~l~~~~~~--~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~--~~~ 622 (1099)
+.+++|.+..++..+-.+++..+.+ +++++. ......+... .+...++++.+.+.+ +|.+.+++-...| .++
T Consensus 522 lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~~-~p~~~~pTil~~le~ddp~V~N~LID~s~iE~~l 600 (1074)
T KOG0250|consen 522 LNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSFTPFDYSVGR-NPGYEFPTILDALEFDDPEVLNVLIDKSGIEQVL 600 (1074)
T ss_pred hhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecCCcccccccc-CCCCCCCceeeeeecCChHHHHHhhhhccceeEE
Confidence 9999999999999888888876554 344442 2221111111 111225677788888 6777777777644 678
Q ss_pred EecChHHHHHHHHh-----cCCcEEecCCCcccCCcc
Q 001328 623 ICRDLDVCTRVART-----DGLDCITLEGDQVSKKGG 654 (1099)
Q Consensus 623 ~~~~~~~a~~~~~~-----~~~~~vt~~g~~~~~~g~ 654 (1099)
++.|-..|..+... +-..++|++|..++.+|.
T Consensus 601 LiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~ 637 (1074)
T KOG0250|consen 601 LIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGP 637 (1074)
T ss_pred EecchHHHHHHHhcCCCCccceeeeccCccccccCCC
Confidence 88886666666542 234688999998877765
No 9
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=1.1e-40 Score=361.39 Aligned_cols=232 Identities=21% Similarity=0.321 Sum_probs=171.6
Q ss_pred eeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhccccccc-chhhhhhhhccCCCCcceEEEEEEE
Q 001328 3 IKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNL-RSEDRHALLHEGAGHQVLSAFVEIV 81 (1099)
Q Consensus 3 i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~-~~~~~~~~i~~g~~~~~~~a~v~~~ 81 (1099)
|-+|.+.||.+|....+. |+|.+|.|+||||||||||+-||..+|||.|..+ |+.+..++|..|.. .++|+|+
T Consensus 22 IvrI~l~NF~Ty~~~e~~--pgpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G~~----~g~IEI~ 95 (1072)
T KOG0979|consen 22 IVRIELHNFLTYDHTEFL--PGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRGED----EGYIEIE 95 (1072)
T ss_pred eEEEEEeeeeeeeeeeec--CCCceeeEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhcCCc----cceEEEE
Confidence 789999999999766555 8899999999999999999999999999988887 56677789999997 7899999
Q ss_pred EeCCCCCCCCCCccEEEEEEe-ecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHHHHHH
Q 001328 82 FDNSDNRIPVDKEEVRLRRTI-GLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLK 160 (1099)
Q Consensus 82 f~~~~~~~~~~~~~~~i~R~~-~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~~~le 160 (1099)
+.+.+ ..++|+|.+ ..+.|.|+|||..++.++|.++...+++..+|++.|++|.+|.+|+.++|-+++.--+
T Consensus 96 l~~~~-------e~~~ItR~I~~~k~S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTe 168 (1072)
T KOG0979|consen 96 LKDKD-------ETLTITRLISRDKESKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETE 168 (1072)
T ss_pred EecCC-------CceEEEEEEeecCCcceeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHHH
Confidence 97764 456999999 5567999999999999999999999999999999999999999999999999987777
Q ss_pred HhcChH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 161 EIGGTR---VYEERRRESLKI-------MQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDK 230 (1099)
Q Consensus 161 e~~g~~---~~~~~~~e~~~~-------l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 230 (1099)
.+.|.. .|...+.+.... +......+..+.+.++.+...++.+.+.......+.-+.....++.|.....
T Consensus 169 kAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ 248 (1072)
T KOG0979|consen 169 KAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDR 248 (1072)
T ss_pred HhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhH
Confidence 777755 344433333333 3334444455555555555555555544444444444444444555544444
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001328 231 ELHDARQKLLEVDDTRT 247 (1099)
Q Consensus 231 ~~~~~~~~l~~~~~~~~ 247 (1099)
++..+......+...+.
T Consensus 249 ey~~~k~~~~r~k~~~r 265 (1072)
T KOG0979|consen 249 EYNAYKQAKDRAKKELR 265 (1072)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444333333
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.9e-37 Score=384.85 Aligned_cols=207 Identities=13% Similarity=0.153 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q 001328 824 MRRKQELEALISSAENDVMLSEAESKKQELADAKSFVEDARQELKRVSDSIVQLTKELNKIKDEKTKLKTLEDNY--ERK 901 (1099)
Q Consensus 824 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 901 (1099)
...+..+...+..+........+..+..++..+...+..+..++..+...+..+...+..+......+..++..+ ...
T Consensus 950 ~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~ 1029 (1311)
T TIGR00606 950 VKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENE 1029 (1311)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666665555556677777777777777777777777777777777777777777777777777655 666
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCChhhhhhhccCCHHHHHHHHHHHHHHhccCccCcHHHHHH
Q 001328 902 LQDDARELEQLLSR-----RNILLAKQEEYSKKIRELGPLSSDAFDTYKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQ 976 (1099)
Q Consensus 902 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~vn~~a~ee 976 (1099)
+..+..++..+..+ ...+......+...+..+........+ ....++.++..++.+|.. .+
T Consensus 1030 l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g-----~~k~le~qi~~l~~eL~e---------~~ 1095 (1311)
T TIGR00606 1030 LKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALG-----RQKGYEKEIKHFKKELRE---------PQ 1095 (1311)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcc---------hH
Confidence 66666666666554 345555566666666655444433333 677888888888888854 35
Q ss_pred HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEE
Q 001328 977 YVNFTEQREELQRRQAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVM 1044 (1099)
Q Consensus 977 ~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~~~~~f~~in~~f~~~f~~lf~gG~a~L~l 1044 (1099)
|..+..+|....-+......++.+|..+...||..+...+...+..||..+.++|+..|.|-.+.=+.
T Consensus 1096 yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~w~~~~~~~~~~~i~ 1163 (1311)
T TIGR00606 1096 FRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEINKIIRDLWRSTYRGQDIEYIE 1163 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999998666555
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=100.00 E-value=3.5e-38 Score=385.45 Aligned_cols=155 Identities=21% Similarity=0.282 Sum_probs=116.7
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|+|++|.|.||+||.+..+ +|+||+|+|+||||||||||++||.|+|+|.... + ..+.++|+.|++ .++|++
T Consensus 1 M~i~~l~l~nf~~~~~~~~--~f~~g~~~i~G~Ng~GKStil~ai~~~l~g~~~~-~-~~~~~~~~~~~~----~~~v~~ 72 (880)
T PRK02224 1 MRFDRVRLENFKCYADADL--RLEDGVTVIHGVNGSGKSSLLEACFFALYGSKAL-D-DTLDDVITIGAE----EAEIEL 72 (880)
T ss_pred CeEEEEEEECcccccceEE--ecCCCeEEEECCCCCCHHHHHHHHHHHhCCCccc-c-ccHHHHHhCCCC----cEEEEE
Confidence 9999999999999988754 4999999999999999999999999999983321 2 345678888775 689999
Q ss_pred EEeCCCCCCCCCCccEEEEEEee-cCC----CeEE-eCCee--cCHHHHHHHHH-HcCCC--CCCCceeecCchHhHhhc
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTIG-LKK----DEYF-LDGKH--ITKTEVMNLLE-SAGFS--RSNPYYVVQQGKIASLTL 149 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~~-~~~----~~~~-in~~~--~~~~~~~~l~~-~~g~~--~~~~~~~i~qg~i~~~~~ 149 (1099)
+|.+.++ .+.|.|.++ .|. ..|+ .++.. -...++...+. .+|++ .+...++++||.+..|+.
T Consensus 73 ~f~~~~~-------~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~llg~~~~~f~~~~~i~Qge~~~~l~ 145 (880)
T PRK02224 73 WFEHAGG-------EYHIERRVRLSGDRATTAKCVLETPEGTIDGARDVREEVTELLRMDAEAFVNCAYVRQGEVNKLIN 145 (880)
T ss_pred EEEECCE-------EEEEEEEEecCCCCcccceeEEeCCCccccChHHHHHHHHHHHCCCHHHhcceeEeeccChHHHHc
Confidence 9987644 458888873 221 2333 23322 13334433333 35655 334457899999999999
Q ss_pred CCHHHHHHHHHHhcChHHHHH
Q 001328 150 MKDSERLDLLKEIGGTRVYEE 170 (1099)
Q Consensus 150 ~~~~~~~~~lee~~g~~~~~~ 170 (1099)
++|.+|+.+|.+++|+..|..
T Consensus 146 ~~p~~R~~ii~~l~~l~~~e~ 166 (880)
T PRK02224 146 ATPSDRQDMIDDLLQLGKLEE 166 (880)
T ss_pred CCHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999988754
No 12
>PRK03918 chromosome segregation protein; Provisional
Probab=100.00 E-value=7.6e-35 Score=357.79 Aligned_cols=179 Identities=19% Similarity=0.325 Sum_probs=133.4
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc-cccccchhhhhhhhccCCCCcceEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLRSEDRHALLHEGAGHQVLSAFVE 79 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~~~~~~~~i~~g~~~~~~~a~v~ 79 (1099)
|+|.+|.|.||+||.+.+ + .|+||+|+|+||||||||||++||.|+||| .+...++....++++.|.+ .|+|.
T Consensus 1 m~i~~l~i~nf~~~~~~~-i-~f~~g~~~i~G~nG~GKStil~ai~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~v~ 74 (880)
T PRK03918 1 MKIEELKIKNFRSHKSSV-V-EFDDGINLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDFTRIGGS----GTEIE 74 (880)
T ss_pred CeeEEEEEeCccCccCce-E-ecCCCcEEEEcCCCCCHHHHHHHHHHHhcCCCCCCccccChhhcccCCCC----CEEEE
Confidence 999999999999998865 4 499999999999999999999999999997 3444444445678888775 68999
Q ss_pred EEEeCCCCCCCCCCccEEEEEEeecCCCeEEe-CCe---ecCHHHHHHHHHH-cCCCCCCCceeecCchHhHhhcCCHHH
Q 001328 80 IVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFL-DGK---HITKTEVMNLLES-AGFSRSNPYYVVQQGKIASLTLMKDSE 154 (1099)
Q Consensus 80 ~~f~~~~~~~~~~~~~~~i~R~~~~~~~~~~i-n~~---~~~~~~~~~l~~~-~g~~~~~~~~~i~qg~i~~~~~~~~~~ 154 (1099)
++|..+| ..++|.|.+..+.+.+++ +|. ....+++...+.. +|.+.+...++++||++..|+. .|.+
T Consensus 75 ~~f~~~~-------~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~~~Qg~~~~~~~-~~~~ 146 (880)
T PRK03918 75 LKFEKNG-------RKYRIVRSFNRGESYLKYLDGSEVLEEGDSSVREWVERLIPYHVFLNAIYIRQGEIDAILE-SDES 146 (880)
T ss_pred EEEEECC-------eEEEEEEEEcCCceEEEECCCCeeecccHHHHHHHHHHhcCHHHhceeEEEeccchHHHhc-CcHH
Confidence 9997654 455899998655444444 443 2345566665553 3333333456789999999986 7999
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 155 RLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVV 193 (1099)
Q Consensus 155 ~~~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~ 193 (1099)
|+.+|+.++|+..|......+..........+..+...+
T Consensus 147 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (880)
T PRK03918 147 REKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFI 185 (880)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998776666665555555544444444
No 13
>PRK04863 mukB cell division protein MukB; Provisional
Probab=100.00 E-value=3.4e-30 Score=311.45 Aligned_cols=278 Identities=14% Similarity=0.169 Sum_probs=163.2
Q ss_pred eeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccc--hhh---------hhhhhccCCC
Q 001328 2 HIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLR--SED---------RHALLHEGAG 70 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~--~~~---------~~~~i~~g~~ 70 (1099)
+|++|.|.||++|.+.++. |++|+++|+|||||||||+|+||.++|++..+.+. +.. -.++....
T Consensus 6 ki~~l~l~N~~~~~~~~~~--f~~~~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~~~~~~~~~~~r~l~~~l-- 81 (1486)
T PRK04863 6 KFRSLTLVNWNGFFARTFD--LDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKL-- 81 (1486)
T ss_pred eeeEEEEecccCccceEEE--ecCCeEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcccccccccccccchhccc--
Confidence 6899999999999988655 99999999999999999999999999976333221 110 00111001
Q ss_pred CcceEEEEEEEEeCCCCCCCCCCccEEEEEEeecC-----C-CeEEeCC--------------------eecCHHHHHHH
Q 001328 71 HQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLK-----K-DEYFLDG--------------------KHITKTEVMNL 124 (1099)
Q Consensus 71 ~~~~~a~v~~~f~~~~~~~~~~~~~~~i~R~~~~~-----~-~~~~in~--------------------~~~~~~~~~~l 124 (1099)
....|++.+.|.++.+.+ -.+.|.+....+ . ..|++.| .|.+..++...
T Consensus 82 -~~~~~Y~~lef~d~~~~~----~~~GV~l~~~a~~~~~~~~~~F~i~~~~~~v~~~d~l~~~~~~~~~~~~ti~Elk~~ 156 (1486)
T PRK04863 82 -KAGVCYAALDVVNSRGQR----VLVGVRLQQVAGRDRKVDIKPFAIQGLPDSVQPTDLLTETVNERQARVLTLNELKDK 156 (1486)
T ss_pred -CCCceEEEEEEEeCCceE----EEEEEEEEeecCCCCCcCceeEEEecCccccChHHHHHHhhcccccccCCHHHHHHH
Confidence 123577888886653321 223333322111 1 1233322 13334444444
Q ss_pred HHH-cCCCC--CCC---c--eeecCchHhHhh------------------------------------------------
Q 001328 125 LES-AGFSR--SNP---Y--YVVQQGKIASLT------------------------------------------------ 148 (1099)
Q Consensus 125 ~~~-~g~~~--~~~---~--~~i~qg~i~~~~------------------------------------------------ 148 (1099)
+.. .|... +.. | .++.||.+..++
T Consensus 157 i~e~~Gl~~~qF~ri~~Y~~~Ll~qG~f~~~L~a~~dR~kF~kLf~taiy~~i~~~i~~fl~~yll~e~~~v~~~i~~m~ 236 (1486)
T PRK04863 157 AAALEGVQFKQFNSITDYHSLMFDLGIIPRRLRSSSDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDME 236 (1486)
T ss_pred HHHhcCCceeeeccHHHHHHHHHHCCCchhhhhccchHHHHHHHHHHHHHhhHHHhHHHHHHHHcCCCChhhhHHHHHHH
Confidence 432 22221 111 0 122333332110
Q ss_pred --------------------------------------cCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 149 --------------------------------------LMKDSERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQII 190 (1099)
Q Consensus 149 --------------------------------------~~~~~~~~~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~ 190 (1099)
-..|.+|+.+|++++| |+.++.++.+.+..+..++.++.
T Consensus 237 ~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEAag---~r~rk~eA~kkLe~tE~nL~rI~ 313 (1486)
T PRK04863 237 AALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEALE---LRRELYTSRRQLAAEQYRLVEMA 313 (1486)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1335678888888854 66899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001328 191 QVVKYLDERLKELDEEKEELRKYQQLDKQRKS--LEYTIYDKELHDARQKLLEVDDTRTRFSDESAKMYNSLLDAQEKSK 268 (1099)
Q Consensus 191 ~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 268 (1099)
+.+.++..++.+|+.+.+.+..|..+..+... .++..+...+..+...+......+......+..+..++..++..+.
T Consensus 314 diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLe 393 (1486)
T PRK04863 314 RELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVD 393 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888775222 2333334444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001328 269 DSDKRFKDLMKEVQTLNKEKEAI 291 (1099)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l 291 (1099)
.+...+..+...+..+...+..+
T Consensus 394 eLqeqLaelqqel~elQ~el~q~ 416 (1486)
T PRK04863 394 ELKSQLADYQQALDVQQTRAIQY 416 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333333333333333
No 14
>PRK01156 chromosome segregation protein; Provisional
Probab=100.00 E-value=2.7e-30 Score=315.15 Aligned_cols=173 Identities=25% Similarity=0.321 Sum_probs=134.0
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|+|++|.|.||+||.+.+ + .|+||+|+|+||||||||||++||.|||||..+ +....++++.|.+ .|+|++
T Consensus 1 M~i~~l~l~NF~s~~~~~-i-~f~~gi~~I~G~NGsGKSsileAI~~aL~g~~~---~~~~~~~i~~~~~----~~~V~l 71 (895)
T PRK01156 1 MIIKRIRLKNFLSHDDSE-I-EFDTGINIITGKNGAGKSSIVDAIRFALFTDKR---TEKIEDMIKKGKN----NLEVEL 71 (895)
T ss_pred CeEEEEEEeCccCCCCce-E-ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc---cccHHHHhhCCCC----eEEEEE
Confidence 999999999999998765 4 499999999999999999999999999998432 3345688888875 799999
Q ss_pred EEeCCCCCCCCCCccEEEEEEee-cCC-----CeEEeCCeecC--HHHHHHHHH--HcCCCC--CCCceeecCchHhHhh
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTIG-LKK-----DEYFLDGKHIT--KTEVMNLLE--SAGFSR--SNPYYVVQQGKIASLT 148 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~~-~~~-----~~~~in~~~~~--~~~~~~l~~--~~g~~~--~~~~~~i~qg~i~~~~ 148 (1099)
+|.++| ..+.|.|.+. .+. ..|++||.+++ ..++..++. .+|++. +....+++||.+..|+
T Consensus 72 ~f~~~g-------~~y~i~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~il~~~~~~f~~~i~~~Qg~~~~l~ 144 (895)
T PRK01156 72 EFRIGG-------HVYQIRRSIERRGKGSRREAYIKKDGSIIAEGFDDTTKYIEKNILGISKDVFLNSIFVGQGEMDSLI 144 (895)
T ss_pred EEEECC-------EEEEEEEEEecCCCCCCceEEEecCCeeccccHHHHHHHHHHHHcCCCHHHhceeEEEeccchHHHH
Confidence 997653 4568999983 221 23667998765 457777764 467662 2335678999999999
Q ss_pred cCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 149 LMKDSERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQI 189 (1099)
Q Consensus 149 ~~~~~~~~~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~ 189 (1099)
.++|.+|+.+|+.++|+..|....+.+...+......+..+
T Consensus 145 ~~~~~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~ei~~l 185 (895)
T PRK01156 145 SGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNI 185 (895)
T ss_pred hCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876655555554444444333
No 15
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.1e-27 Score=285.25 Aligned_cols=183 Identities=23% Similarity=0.366 Sum_probs=137.9
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|+|.+|.|.||+||.+.++...|++|+|+|+||||||||||||||.|+|+|.....+..+..++++.|.. .++|++
T Consensus 1 M~i~~L~L~Nf~S~~~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~~~~~~~~i~~g~~----~~~V~l 76 (908)
T COG0419 1 MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLGAFSLDDLIRAGEK----SASVEL 76 (908)
T ss_pred CCCeeeehcccccccccceeecCCCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCccchhhhHHHhcCCc----cEEEEE
Confidence 9999999999999997665434889999999999999999999999999995554444566788998887 589999
Q ss_pred EEeCCCCCCCCCCccEEEEEEeecCCC-------eEEeCCeec--CHHHHHHHHH-HcCCC--CCCCceeecCchHhHhh
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTIGLKKD-------EYFLDGKHI--TKTEVMNLLE-SAGFS--RSNPYYVVQQGKIASLT 148 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~~~~~~-------~~~in~~~~--~~~~~~~l~~-~~g~~--~~~~~~~i~qg~i~~~~ 148 (1099)
+|.+.|. .+.|.|.++.+.+ .-..+|..+ ...++...+. .+|++ .+....+++||.+..|+
T Consensus 77 ~F~~~g~-------~Y~i~R~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl 149 (908)
T COG0419 77 EFEVNGK-------KYRIEREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQGEFDAFL 149 (908)
T ss_pred EEEECCE-------EEEEEeeeccccCCCccchhhcccCcchhhhhhhhHHHHHHHHhCCCHHHHhHHheeccHhHHHHH
Confidence 9996554 4488888733222 122355443 3336666555 66776 34456789999999999
Q ss_pred cCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 149 LMKDSERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVVK 194 (1099)
Q Consensus 149 ~~~~~~~~~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 194 (1099)
.++|.+|..++.+++|+..|......+.............+...+.
T Consensus 150 ~~~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 150 KSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hcCcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877666555555555554444444443
No 16
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=100.00 E-value=8.6e-24 Score=256.69 Aligned_cols=181 Identities=20% Similarity=0.308 Sum_probs=127.5
Q ss_pred CeeeEEEEecccccccccccccCC------CCcEEEEcCCCCChhHHHHHHHHHhcccccccc--hhhhhhhhccCCCCc
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFS------PQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLR--SEDRHALLHEGAGHQ 72 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~------~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~--~~~~~~~i~~g~~~~ 72 (1099)
|+|.+|.|.||+||.+.+.+ +|. .|+++|+||||||||||||||.|+|||....+. +..+.++++.|+.
T Consensus 1 Mk~~~l~~~nf~s~~~~~~i-df~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~~~-- 77 (1047)
T PRK10246 1 MKILSLRLKNLNSLKGEWKI-DFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDTA-- 77 (1047)
T ss_pred CcceEEEeecceeEcCCceE-EEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCCCc--
Confidence 99999999999999987777 474 689999999999999999999999999333332 2345677777765
Q ss_pred ceEEEEEEEEeCCCCCCCCCCccEEEEEEe----e--cCC-----C-eEEe-CCeec--CHHHHHHHHH-HcCCC--CCC
Q 001328 73 VLSAFVEIVFDNSDNRIPVDKEEVRLRRTI----G--LKK-----D-EYFL-DGKHI--TKTEVMNLLE-SAGFS--RSN 134 (1099)
Q Consensus 73 ~~~a~v~~~f~~~~~~~~~~~~~~~i~R~~----~--~~~-----~-~~~i-n~~~~--~~~~~~~l~~-~~g~~--~~~ 134 (1099)
.|+|+++|..++..| .|.|.. + .|. . .|.+ +|..+ ...++...+. .+|++ .+.
T Consensus 78 --~~~v~~~F~~~~~~y-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~i~~llgl~~~~F~ 148 (1047)
T PRK10246 78 --ECLAEVEFEVKGEAY-------RAFWSQNRARNQPDGNLQAPRVELARCADGKILADKVKDKLELTATLTGLDYGRFT 148 (1047)
T ss_pred --ceEEEEEEEECCeEE-------EEEeehhhcccCCCCccccccceeeEcCCCCeeccCchHHHHHHHHHhCCCHHHhh
Confidence 689999997765544 454432 1 111 1 1222 33322 2345544333 45665 445
Q ss_pred CceeecCchHhHhhcCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 135 PYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVV 193 (1099)
Q Consensus 135 ~~~~i~qg~i~~~~~~~~~~~~~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~ 193 (1099)
..++++||.+..|+.++|.+|..+|+.++|+..|..-...+..+.......+..+...+
T Consensus 149 ~~v~l~QG~f~~fl~a~~~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l 207 (1047)
T PRK10246 149 RSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQA 207 (1047)
T ss_pred hheeeccccHHHHHhCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999997555555555555554444444444
No 17
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.4e-23 Score=255.74 Aligned_cols=182 Identities=18% Similarity=0.235 Sum_probs=126.3
Q ss_pred CeeeEEEEecccccccccccccCCC--CcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCC-CCcceEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSP--QVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGA-GHQVLSAF 77 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~--~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~-~~~~~~a~ 77 (1099)
|+|.+|+|.||+||.+.+.| +|++ |+++|+||||||||||||||.|||||.++.... .+.++++. ..+...|+
T Consensus 1 M~~~~L~l~nf~s~~~~~~i-dF~~~~gl~~I~G~nGaGKSTildAI~~aL~G~~~~~~~---~~~~~~~~~~~~~~~~~ 76 (1042)
T TIGR00618 1 MKPLRLTLKNFGSYKGTHTI-DFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRRSE---VIRSLNSLYAAPSEAAF 76 (1042)
T ss_pred CeeeEEEEeCeeccCCCcee-eecCCCCeEEEECCCCCCHHHHHHHHHHHhcCCCCCCCc---cccccchhhcCCCCCeE
Confidence 99999999999999998778 5987 999999999999999999999999994332211 12222221 12334789
Q ss_pred EEEEEeCCCCCCCCCCccEEEEEEe------ecCCCeEE---e----CCeec--CHHHHHHHHH-HcCCCC--CCCceee
Q 001328 78 VEIVFDNSDNRIPVDKEEVRLRRTI------GLKKDEYF---L----DGKHI--TKTEVMNLLE-SAGFSR--SNPYYVV 139 (1099)
Q Consensus 78 v~~~f~~~~~~~~~~~~~~~i~R~~------~~~~~~~~---i----n~~~~--~~~~~~~l~~-~~g~~~--~~~~~~i 139 (1099)
|+++|...|..| .|.|.+ +.|...+. + +|..+ ...++...+. .+|++. +...+++
T Consensus 77 v~l~F~~~g~~y-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~llGld~~~F~~~~~l 149 (1042)
T TIGR00618 77 AELEFSLGTKIY-------RVHRTLRCTRSHRKTEQPEQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFTRVVLL 149 (1042)
T ss_pred EEEEEEECCEEE-------EEEEeeeeeccCCCCcchhhhhhhhcCCCCcccccchHHHHHHHHHHhCCCHHHHhhheee
Confidence 999997665444 444443 11221111 1 22222 3457777655 678873 3345789
Q ss_pred cCchHhHhhcCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 140 QQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVV 193 (1099)
Q Consensus 140 ~qg~i~~~~~~~~~~~~~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~ 193 (1099)
+||++..|+.++|.+|..+|++++|+..|..-...+..........+..+...+
T Consensus 150 ~Qg~~~~fl~a~~~eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (1042)
T TIGR00618 150 PQGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRS 203 (1042)
T ss_pred cccchHHHHhCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998765555555555554444444444
No 18
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=100.00 E-value=5.6e-24 Score=262.95 Aligned_cols=268 Identities=15% Similarity=0.141 Sum_probs=167.1
Q ss_pred eeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc-ccc-------ccchhhhhhhhccCC-C--
Q 001328 2 HIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD-IFQ-------NLRSEDRHALLHEGA-G-- 70 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~-------~~~~~~~~~~i~~g~-~-- 70 (1099)
++.++-|.||..|.+.++. |++|+++|+|||||||||+||||.|+|+. +.+ ..+..+|.++++.|+ .
T Consensus 3 ~~~R~gliN~~~~~~~~~~--f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~~~~~rln~~~~~~r~~~~~l~~g~~~~~ 80 (1353)
T TIGR02680 3 RPHRAGLVNLWYYDEQEFW--FRDGRLLLRGNNGAGKSKVLELLLPFLLDGKLRPSRLEPDGDSRKRMAWNLLLGGVNHD 80 (1353)
T ss_pred eeeeEEEEEeccccceEEe--cCCCeEEEECCCCCcHHHHHHHHHHHHhcCCCCccccCCCCCccccHHHHHcCCCCCCC
Confidence 5789999999999876654 99999999999999999999998877766 333 235667889999887 2
Q ss_pred CcceEEEEEEEEeCCCCC--CCCCCccEEEEEE-------e--e----cCCCeEEe--CCeecCHHHHHHHHHHcCCCCC
Q 001328 71 HQVLSAFVEIVFDNSDNR--IPVDKEEVRLRRT-------I--G----LKKDEYFL--DGKHITKTEVMNLLESAGFSRS 133 (1099)
Q Consensus 71 ~~~~~a~v~~~f~~~~~~--~~~~~~~~~i~R~-------~--~----~~~~~~~i--n~~~~~~~~~~~l~~~~g~~~~ 133 (1099)
.+.++++|++.|+++++. |..-|-.+...+. + . -+.+.|.+ +|.|++...+...+...|.-..
T Consensus 81 ~~~~y~~~e~~~~~~~~~~~~~tiG~~l~a~~~~~~~~~~ff~~~~rri~~d~~l~~~~~~plt~~~l~~~l~~~~~~~~ 160 (1353)
T TIGR02680 81 ERVGYLWLEFGRVEDDGNEHYLTIGAGLRASASRGTADAWFFTTDARRIGYDLWLLSPAGIPLTRDRLKEALGDGGEVFD 160 (1353)
T ss_pred CcceeEEEEeeccCCCCCceEEEeeeeEEeecCCCCCceEEEEeCCcccCCCceeecCCCccCCHHHHHHHhCCCCeEEe
Confidence 256788888888875432 2111111111111 1 0 11222332 4667777777776653331000
Q ss_pred C--Cc------eeec---CchHhHhh-------------cCCHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 134 N--PY------YVVQ---QGKIASLT-------------LMKDSERLDLLKEI-GGTRVYEERRRESLKIMQDTGNKRQQ 188 (1099)
Q Consensus 134 ~--~~------~~i~---qg~i~~~~-------------~~~~~~~~~~lee~-~g~~~~~~~~~e~~~~l~~~~~~~~~ 188 (1099)
. .| .+++ .+++..++ .++|.....++.+. .+.+. .-...|.+...++.+
T Consensus 161 ~~~~Yr~~v~~~lfG~~~~~ry~~l~~~l~~lr~P~Ls~~~~~~~l~~~l~~~l~~l~~------~~i~~l~e~~~~~~~ 234 (1353)
T TIGR02680 161 TATDYRRAVDEELFGFLGEERYAALLDLLIQLRQPQLSKKPDEGVLSDALTEALPPLDD------DELTDVADALEQLDE 234 (1353)
T ss_pred cHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHHH
Confidence 0 01 0011 11222211 23344555555553 23222 234556777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001328 189 IIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARQKLLEVDDTRTRFSDESAKMYNSLLDAQEKSK 268 (1099)
Q Consensus 189 ~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 268 (1099)
+...+..+...+..|......+..|...........+......+..+..++..+...+......+..++..+..+..++.
T Consensus 235 ~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~ 314 (1353)
T TIGR02680 235 YRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREAD 314 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888776666666776667777777777777777777666666666665665555555
Q ss_pred HHHHHHHHH
Q 001328 269 DSDKRFKDL 277 (1099)
Q Consensus 269 ~~~~~~~~~ 277 (1099)
.++.++..+
T Consensus 315 ~l~~~~~~l 323 (1353)
T TIGR02680 315 ALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHh
Confidence 555555444
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.98 E-value=1.4e-22 Score=250.31 Aligned_cols=755 Identities=18% Similarity=0.277 Sum_probs=404.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001328 171 RRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARQKLLEVDDTRTRFS 250 (1099)
Q Consensus 171 ~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 250 (1099)
+.+.+...+......+..+...+..+..+................+...+...++.....++..+...+..+...+..+.
T Consensus 180 ~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 259 (1163)
T COG1196 180 KLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQ 259 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888999999999999999999999999998888898889999998888899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHhcchhhHHHHHHHH
Q 001328 251 DESAKMYNSLLDAQEKSKDSDKRFKDLMKEVQTLNKEKEAIEKRLTEAIKNQTAFELDVKDIQERISGNSQARDDAKKQL 330 (1099)
Q Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1099)
..+......+..+...+..+...+..+...+..+...+..++.++..+...+..+..........+......+......+
T Consensus 260 ~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1163)
T COG1196 260 EELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889898888888888888877777777777888888877777777777776666666666666555555555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHH
Q 001328 331 RSLLEEIDDSSKELDKANTLYENKCIEEK----KITKDIMEREKQLSILYQKQGRATQFSSKDARDKWLQKEIDDLERVH 406 (1099)
Q Consensus 331 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 406 (1099)
.........+......+............ .....+..+...+..+....... ...+..++.++..+...+
T Consensus 340 ~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~l~~~i~~l~~~~ 413 (1163)
T COG1196 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEI------RNELEELKREIESLEERL 413 (1163)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 54422222222222222222222221111 22333333333333333333322 333444455555555555
Q ss_pred HHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 407 SSNLKQDQKLQEEIQRLKGDLKERDEYIESRKREIAYLESSISQSREGFNNHKTQRDKMQDERKSLWVKESELCAEIDKL 486 (1099)
Q Consensus 407 ~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 486 (1099)
..+...+..+..++..+..+...+...+......+..+...+..+...+.++...+..+......+...+......+..+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 493 (1163)
T COG1196 414 ERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRL 493 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555444444
Q ss_pred HHHHHH------H----HH-------hhhh--hCCcchHHhHHHH-------------------HHHHHH----------
Q 001328 487 KAEVEK------A----EK-------SLDH--ATPGDVRRGLNSI-------------------RRICRE---------- 518 (1099)
Q Consensus 487 ~~~~~~------~----~~-------~~~~--~~~~~~~~~l~~~-------------------~~~~~~---------- 518 (1099)
...... . .. .+.. .....|..++..+ -.++..
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~Gv~G~v~~li~v~~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflp 573 (1163)
T COG1196 494 EAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLP 573 (1163)
T ss_pred HHHhhhhhhHHHHHHHHhccCCCccchHHHhcCcChHHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCc
Confidence 332221 0 00 0000 0111122222221 000100
Q ss_pred -------cC-----CCccccccccccccchhhHHHHHHhhccCcceEEecCchHHHHHHHHHhhcCCCeeEEEeCCCCCC
Q 001328 519 -------YK-----IDGVYGPIIELLDCDEKFFTAVEVTAGNSLFHVVVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKA 586 (1099)
Q Consensus 519 -------~~-----~~~~~~~l~~~i~~~~~~~~aie~~l~~~l~~~vv~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~ 586 (1099)
.. .+|++|++.+++.+|+.|..++..++|.. +||++...|..+..... . +..+++++.
T Consensus 574 l~~i~~~~~~~~~~~~g~~~~a~dli~~d~~~~~~~~~~l~~t---~Iv~~l~~A~~l~~~~~--~--~~riVTl~G--- 643 (1163)
T COG1196 574 LDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDT---LVVDDLEQARRLARKLR--I--KYRIVTLDG--- 643 (1163)
T ss_pred hhhhccccccccccccchhHHHHHHhcCCHHHHHHHHHHhCCe---EEecCHHHHHHHHHhcC--C--CceEEecCC---
Confidence 00 14556677799999999999999999877 89999999876644321 1 111222211
Q ss_pred CCCCCCCcccccccccccccCcchHHHHHHhccCeEEecChHHHHHHHHhcCCcEEecCCCcccCCcceecccccccchh
Q 001328 587 PRVTYPKSNDVIPLLDRLEFSPNFKPAFAQVFARTVICRDLDVCTRVARTDGLDCITLEGDQVSKKGGMTGGFYDYRRSK 666 (1099)
Q Consensus 587 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~vt~~g~~~~~~g~~~g~~~~~~~~~ 666 (1099)
.++.+.|.+.++...-.++..... ..
T Consensus 644 -----------------------------------------------------~~~~~~G~~tGG~~~~~~~~~~~~-~l 669 (1163)
T COG1196 644 -----------------------------------------------------DLVEPSGSITGGSRNKRSSLAQKR-EL 669 (1163)
T ss_pred -----------------------------------------------------cEEeCCeeeecCCccccchhhHHH-HH
Confidence 123333433333111111100111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 001328 667 LKFMNIIMRNTKTINAREEEVEKLISQ---LDQKITEHVTEQQKTDAKRAHDKSELEQLKQDIANANKQKQIISK----- 738 (1099)
Q Consensus 667 ~~~~~~l~~l~~~~~~l~~~l~~~~~~---l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----- 738 (1099)
..+..++..+...+..+...+..+... +...+..+...+..+..++..+...+..+..+...+...+..+..
T Consensus 670 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 749 (1163)
T COG1196 670 KELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEEL 749 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333333333333333333332211 333333333333333333333333333333333333333333333
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 739 --ALENKEKSLADVRTQLDQLEASMAMKQAEMNTDLIDHLSLDEKNLLSRLNPEITELKEKLITCRTDRIEYETRKAELE 816 (1099)
Q Consensus 739 --~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 816 (1099)
.+..+..++..+...+..+......+...+..... ........+..+..++..++..+..+..++.........+.
T Consensus 750 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1163)
T COG1196 750 EEELEELQERLEELEEELESLEEALAKLKEEIEELEE--KRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE 827 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333222222221100 00011122333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 817 TNLTTNLMRRKQELEALISSAENDVMLSEAESKKQELADAKSFVEDARQELKRVSDSIVQLTKELNKIKDEKTKLKTLED 896 (1099)
Q Consensus 817 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (1099)
.++ ..+..++..+...+..+... +..++..+..+...+..+...+..+...+..+......+...+..+...+.
T Consensus 828 ~ei-~~l~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~ 901 (1163)
T COG1196 828 QEI-EELEEEIEELEEKLDELEEE-----LEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELA 901 (1163)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 33333333333333333222 444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHhcCCCChhhhhhhccCCHHHHH
Q 001328 897 NYERKLQDDARELEQLLSRRN-----------------------ILLAKQEEYSKKIRELGPLSSDAFDTYKRKGVKELL 953 (1099)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 953 (1099)
++...+..+...+..+..... .++..+..+...+..+++++..+++.|..
T Consensus 902 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~------- 974 (1163)
T COG1196 902 ELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEE------- 974 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHH-------
Confidence 444443333333333322222 33445555555555666666555444332
Q ss_pred HHHHHHHHHhccCccCcHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 954 KMLHRCNEQLQQFSHVNKKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFS 1032 (1099)
Q Consensus 954 ~~l~~l~~~l~~l~~vn~~a~ee~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~~~~~f~~in~~f~~~f~ 1032 (1099)
+.+.|+.+..++.++......|...+..++..+...+..++..++..|..| |..+|+
T Consensus 975 -------------------~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~i---f~~L~~ 1031 (1163)
T COG1196 975 -------------------VEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEI---FKELFG 1031 (1163)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCC
Confidence 566799999999999999999999999999999999999999999999999 999998
No 20
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.98 E-value=3.9e-22 Score=227.77 Aligned_cols=160 Identities=20% Similarity=0.332 Sum_probs=113.1
Q ss_pred eeeEEEEeccccccc--ccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc-cccccchhhhhhhhccCCC--CcceEE
Q 001328 2 HIKQVIIEGFKSYRE--QIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLRSEDRHALLHEGAG--HQVLSA 76 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~~--~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~~~~~~~~i~~g~~--~~~~~a 76 (1099)
.|.++.|.|.+||++ ...+. |..++|+||||||||||||+.++.|+..| .|++.+| ..|||...- -.-..|
T Consensus 3 ~i~klsI~GIRSf~~~d~~~i~-F~sPlTLIvG~NG~GKTTiIEcLKyatTG~lPpnsk~---~~FiHdpkIage~ev~A 78 (1294)
T KOG0962|consen 3 SIDKLSIRGIRSFDDKDRNTIE-FFSPLTLIVGANGTGKTTIIECLKYATTGELPPNSKG---GSFIHDPKVAGETEVRA 78 (1294)
T ss_pred hhHhhHhhcccccCCcccceee-ecCCeeeEecCCCCCchhHHHHHHHHhcCcCCCCCcC---CCCCCCccccchhhhhh
Confidence 367889999999984 45663 66669999999999999999999999988 7777766 267776653 134468
Q ss_pred EEEEEEeCCCCCCCCCCccEEEEEEee--c--CCC--------eE-EeCCeec----CHHHHHH-HHHHcCCC--CCCCc
Q 001328 77 FVEIVFDNSDNRIPVDKEEVRLRRTIG--L--KKD--------EY-FLDGKHI----TKTEVMN-LLESAGFS--RSNPY 136 (1099)
Q Consensus 77 ~v~~~f~~~~~~~~~~~~~~~i~R~~~--~--~~~--------~~-~in~~~~----~~~~~~~-l~~~~g~~--~~~~~ 136 (1099)
.|.+.|.+. .|..+++.|++. . ... -+ +..|..+ +-.++.. +...+|++ ..+.+
T Consensus 79 qvkL~f~~~------~G~~~~~~R~~qlt~k~~~~~~ktles~~~~~~~g~k~tlS~r~~d~d~~~~~~lGVskAIl~~V 152 (1294)
T KOG0962|consen 79 QVKLAFTDV------NGETMICTRTIQLTQKRTKMEFKTLESVIWAINDGDRVTLSGRSADLDAEMPLHLGVSKAILENV 152 (1294)
T ss_pred eeeeeeecC------CCcEEEeehhhHHHHHHHHHHHHHHhhhheeeecCccccccchhhhhhHHHHHhcCCcHHHHhhh
Confidence 999999877 456678888882 1 111 12 2233332 3335554 44488988 33445
Q ss_pred eeecCchHhHhhcCCHHHHHHHHHHhcChHHHHHHH
Q 001328 137 YVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERR 172 (1099)
Q Consensus 137 ~~i~qg~i~~~~~~~~~~~~~~lee~~g~~~~~~~~ 172 (1099)
.|+-|.. +-++...|..+..-|+++++..+|-...
T Consensus 153 IFcHQEd-S~WPLsEp~~LKkkfD~IF~~tky~KAl 187 (1294)
T KOG0962|consen 153 IFCHQED-STWPLSEPKNLKKKFDDIFSATKYTKAL 187 (1294)
T ss_pred heecccC-CCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 5555554 5577788999999999999988876553
No 21
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.97 E-value=2.8e-22 Score=257.78 Aligned_cols=314 Identities=16% Similarity=0.246 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh---hhh
Q 001328 699 TEHVTEQQKTDAKRAHDKSELEQLKQDIANANKQKQIISKALENKEKSLADVRTQLDQLEASMAMKQAEMNTDL---IDH 775 (1099)
Q Consensus 699 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~---~~~ 775 (1099)
..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+.... ...
T Consensus 719 ~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~el~~l~~~i~~l~~~i~~l~~el~~l~~~~~~~~~~~~~~ 798 (1164)
T TIGR02169 719 GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQA 798 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444444444444444444433333333222211000 000
Q ss_pred CCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 001328 776 LSLDEKNLLSRLNPEITELKEKLITCRTDRIEYETRKAELETNLTTNLMRRKQELEALISSAENDVMLSEAESKKQELAD 855 (1099)
Q Consensus 776 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 855 (1099)
........+..+...+..+...+..+...+..+...+..+...+ ..+...+..+...+..+... +..+...+..
T Consensus 799 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~-~~l~~~~~~~~~~~~~l~~~-----~~~~~~~~~~ 872 (1164)
T TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR-IDLKEQIKSIEKEIENLNGK-----KEELEEELEE 872 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 01123344555555556666666666555555555555555554 44444444444444433322 3333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001328 856 AKSFVEDARQELKRVSDSIVQLTKELNKIKDEKTKLKTLEDNYERKLQDDARELEQLLSRRNILLAKQEEYSKKIRELGP 935 (1099)
Q Consensus 856 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 935 (1099)
+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+......+....... .++..
T Consensus 873 ~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~ 948 (1164)
T TIGR02169 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED----EEIPE 948 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----hhccc
Confidence 33444444444443333333333333333333333333333333333333333322222222211111000 00000
Q ss_pred CChhhhhhhccCCHHHHHHHHHHHHH----HhccCccCcHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001328 936 LSSDAFDTYKRKGVKELLKMLHRCNE----QLQQFSHVNKKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDQR 1011 (1099)
Q Consensus 936 ~~~~~~~~~~~~~~~~l~~~l~~l~~----~l~~l~~vn~~a~ee~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~ 1011 (1099)
.... ...+. ..+..+..++..+.. .+..| ..+.++|..+..++.++......+...+..|+..+......
T Consensus 949 ~~~~-~~~l~-~~l~~l~~~i~~l~~vN~~Ai~~~----~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~ 1022 (1164)
T TIGR02169 949 EELS-LEDVQ-AELQRVEEEIRALEPVNMLAIQEY----EEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFME 1022 (1164)
T ss_pred ccCC-HHHHH-HHHHHHHHHHHHcCCCChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000 123344444443321 11111 12678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001328 1012 KDESIERTFKGVARHFREVF 1031 (1099)
Q Consensus 1012 ~~~~~~~~f~~in~~f~~~f 1031 (1099)
++..+...|..| |..+|
T Consensus 1023 ~f~~~~~~f~~~---~~~l~ 1039 (1164)
T TIGR02169 1023 AFEAINENFNEI---FAELS 1039 (1164)
T ss_pred HHHHHHHHHHHH---HHHHh
Confidence 999999999999 99997
No 22
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.97 E-value=4e-23 Score=267.11 Aligned_cols=562 Identities=17% Similarity=0.227 Sum_probs=292.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 001328 180 QDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARQKLLEVDDTRTRFSDESAKMYNS 259 (1099)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 259 (1099)
......+......+..+...+..+..+...+..-......+..+...+...+..-...++..+...+..+...+..+...
T Consensus 168 ~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 247 (1179)
T TIGR02168 168 SKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEE 247 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556666666666665555444333222222222222111222222233444455555555555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Q 001328 260 LLDAQEKSKDSDKRFKDLMKEVQTLNKEKEAIEKRLTEAIKNQTAFELDVKDIQERISGNSQARDDAKKQLRSLLEEIDD 339 (1099)
Q Consensus 260 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (1099)
+......+..+...+..+...+..+...+..+...+..+...+..+...+..+..++......+..+...+..+..++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 327 (1179)
T TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEE 327 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666555555566666666666666666666666666655555555555555555555555
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001328 340 SSKELDKANTLYENKCIEEKKITKDIMEREKQLSILYQKQGRATQFSSKDARDKWLQKEIDDLERVHSSNLKQDQKLQEE 419 (1099)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 419 (1099)
+...+..+...+..+...+..+...+..+...+.........+ ...+..+...+..+..++..+...+..+...
T Consensus 328 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 401 (1179)
T TIGR02168 328 LESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL------ESRLEELEEQLETLRSKVAQLELQIASLNNE 401 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555444332222 2233444444455555555555555555555
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 420 IQRLKGDLKERDEYIESRKREIAYLESSI-----SQSREGFNNHKTQRDKMQDERKSLWVKESELCAEIDKLKAEVEKAE 494 (1099)
Q Consensus 420 ~~~l~~~~~~l~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 494 (1099)
+..+...+..+...+..+...+..+...+ ..+...+..+...+..+...+..+...+..+...+..+...+..+.
T Consensus 402 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 481 (1179)
T TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555554444 2223333333333333333333333333444444444444444443
Q ss_pred HhhhhhCCcchHHhHHHHHHHHHHcCCCccccccccccccchhhHHHHHHhhccCcceEEecCchHHHHHHHHHhhcCCC
Q 001328 495 KSLDHATPGDVRRGLNSIRRICREYKIDGVYGPIIELLDCDEKFFTAVEVTAGNSLFHVVVDNDETSTKIIRHLNSLKGG 574 (1099)
Q Consensus 495 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~aie~~l~~~l~~~vv~~~~~a~~~~~~l~~~~~~ 574 (1099)
..+.. +. .....+..+... ..+++|++.+++.+++.|. .++|.....++++ ..... ++..+ ..+
T Consensus 482 ~~~~~-l~----~~~~~l~~~~~~--~~~~~~~v~~~i~v~~~~~----~~~g~~~~li~~~-~~~~~-a~~~~---~g~ 545 (1179)
T TIGR02168 482 RELAQ-LQ----ARLDSLERLQEN--LEGFSEGVKALLKNQSGLS----GILGVLSELISVD-EGYEA-AIEAA---LGG 545 (1179)
T ss_pred HHHHH-HH----HHHHHHHHHHHH--hccchhHHHHHHhcccccC----CCccchhceeeeC-hhHHH-HHHHH---HHH
Confidence 33221 11 011112222211 2466778888888877652 2456555556553 22222 22221 123
Q ss_pred eeEEEeCCCCCC---CCCCCCCc-cccccc--ccccccC---cchHHHHHHhccCeEEecChHH---HHHHHH--hcC-C
Q 001328 575 RVTFIPLNRVKA---PRVTYPKS-NDVIPL--LDRLEFS---PNFKPAFAQVFARTVICRDLDV---CTRVAR--TDG-L 639 (1099)
Q Consensus 575 ~~~~~~l~~~~~---~~~~~~~~-~~~~~~--~~~i~~~---~~~~~~~~~~l~~~~~~~~~~~---a~~~~~--~~~-~ 639 (1099)
+++++..+.... .....+.. .|..++ .+.+..+ ..+.+.+..++|.+.++.++.. +..... .++ .
T Consensus 546 ~~~~ivv~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~ 625 (1179)
T TIGR02168 546 RLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGV 625 (1179)
T ss_pred HhcCeEECCHHHHHHHHHHhcccCCCcEEEeeccccccccccccchhhccccCchhHHHHHHhcccHhHHHHHHHHhCCc
Confidence 444332221110 00001110 111111 1333221 1233445555666655555543 222211 233 3
Q ss_pred cEEe-------------cCCCcccCCcce--ecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 640 DCIT-------------LEGDQVSKKGGM--TGGFYDYRRSKLKFMNIIMRNTKTINAREEEVEKLISQLDQKITEHVTE 704 (1099)
Q Consensus 640 ~~vt-------------~~g~~~~~~g~~--~g~~~~~~~~~~~~~~~l~~l~~~~~~l~~~l~~~~~~l~~~l~~~~~~ 704 (1099)
.+|| ++|++++++|.+ +||......+ ....++..+..++..+...+.. +...+..+...
T Consensus 626 ~ivt~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~~~~~~--~~~~~~~~l~~e~~~l~~~~~~----l~~~l~~~~~~ 699 (1179)
T TIGR02168 626 LVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSA--KTNSSILERRREIEELEEKIEE----LEEKIAELEKA 699 (1179)
T ss_pred eEeCCHHHHHHHHHHcCCCceEEecCCEEEcCCceEecCcc--ccccchhhHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 7888 699999998844 3554322222 2445667777777777777777 77778888888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001328 705 QQKTDAKRAHDKSELEQLKQDIANANKQKQIISKALENKEKSLADVRTQLDQLEASMAMKQAEMN 769 (1099)
Q Consensus 705 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~ 769 (1099)
+..+...+..+...+..+...+..+...+..+...+..+...+..+..++..+...+..+...+.
T Consensus 700 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~ 764 (1179)
T TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887777777777777777777777777777766666666665555544
No 23
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.96 E-value=3.3e-26 Score=266.44 Aligned_cols=195 Identities=17% Similarity=0.311 Sum_probs=144.1
Q ss_pred CeeeEEEEecccccccc-cccccCC-CCcEEEEcCCCCChhHHHHHHHHHhcc-cccccchhhhhhhhccCCCCcceEEE
Q 001328 1 MHIKQVIIEGFKSYREQ-IATEPFS-PQVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLRSEDRHALLHEGAGHQVLSAF 77 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~-~~~~~f~-~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~~~~~~~~i~~g~~~~~~~a~ 77 (1099)
|+|++|+|.||+||++. +.+ +|+ +|+|+|+||||+|||||++||.|+||| +++..+. .+++.... ...+.
T Consensus 2 ~~~~~l~l~nf~s~~~~~~~i-~f~~~g~~~i~G~NG~GKStll~aI~~~l~G~~~~~~~~---~~~~~~~~---~~~~~ 74 (562)
T PHA02562 2 LKFKKIRYKNILSVGNQPIEI-QLDKVKKTLITGKNGAGKSTMLEALTFALFGKPFRDIKK---GQLINSIN---KKDLL 74 (562)
T ss_pred ceEEEEEEEcccccCCCceEE-EEcCCCEEEEECCCCCCHHHHHHHHHHHHcCCCcCcCCH---HHhhccCC---CCcEE
Confidence 89999999999999985 456 588 599999999999999999999999988 4433322 24443222 12588
Q ss_pred EEEEEeCCCCCCCCCCccEEEEEEeecCCCeEEeCCeec----CHHHHHHHHH-HcCCCC--CCCceeecCchHhHhhcC
Q 001328 78 VEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHI----TKTEVMNLLE-SAGFSR--SNPYYVVQQGKIASLTLM 150 (1099)
Q Consensus 78 v~~~f~~~~~~~~~~~~~~~i~R~~~~~~~~~~in~~~~----~~~~~~~l~~-~~g~~~--~~~~~~i~qg~i~~~~~~ 150 (1099)
|+++|+..+ ..+.|.|.+..+...+++||.++ ...++...+. .+|++. +....+++||.+..|+.+
T Consensus 75 v~l~f~~~~-------~~y~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~f~~~v~l~q~~f~~f~~~ 147 (562)
T PHA02562 75 VELWFEYGE-------KEYYIKRGIKPNVFEIYCNGKLLDESASSKDFQKYFEQMLGMNYKSFKQIVVLGTAGYVPFMQL 147 (562)
T ss_pred EEEEEEECC-------EEEEEEEeccCCeEEEecCCEEEeccccHHHHHHHHHHHHCCCHHHHhHHheeccCchhhHhcC
Confidence 999997653 45689998865556677899875 4567877777 467663 222467899999999999
Q ss_pred CHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 151 KDSERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEE 209 (1099)
Q Consensus 151 ~~~~~~~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 209 (1099)
+|.+|+.+|+.++|+..|..-.......+......+..+...+..+..++..+......
T Consensus 148 ~~~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~ 206 (562)
T PHA02562 148 SAPARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEE 206 (562)
T ss_pred ChHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999987655555666666666666666666665555555444333
No 24
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=8.2e-18 Score=187.18 Aligned_cols=328 Identities=17% Similarity=0.247 Sum_probs=151.4
Q ss_pred Cccccccccccccc-hhhHHHHHHhhccCcceEEecCchHHHHHHHHHhhcCCCeeEEEeCCCCCCCCCCCCCccccccc
Q 001328 522 DGVYGPIIELLDCD-EKFFTAVEVTAGNSLFHVVVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKAPRVTYPKSNDVIPL 600 (1099)
Q Consensus 522 ~~~~~~l~~~i~~~-~~~~~aie~~l~~~l~~~vv~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 600 (1099)
|...+.+.|++.|. +.+..|+..+++.. +||++.+.|.++ .|-+. +|..++++
T Consensus 690 penvPRLfDLv~~~d~~~r~aFYfaLrdt---LV~d~LeQAtRi-aygk~---rr~RVvTL------------------- 743 (1293)
T KOG0996|consen 690 PENVPRLFDLVKCKDEKFRPAFYFALRDT---LVADNLEQATRI-AYGKD---RRWRVVTL------------------- 743 (1293)
T ss_pred CCCcchHhhhhccCCHHHHHHHHHHHhhh---hhhcCHHHHHHH-hhcCC---CceEEEEe-------------------
Confidence 34455688999985 78899999888876 788888777643 22211 11111111
Q ss_pred ccccccCcchHHHHHHhccCeEEecChHHHHHHHHhcCCcEEecCCCcccCCcceecccccc--------cchhHHHHHH
Q 001328 601 LDRLEFSPNFKPAFAQVFARTVICRDLDVCTRVARTDGLDCITLEGDQVSKKGGMTGGFYDY--------RRSKLKFMNI 672 (1099)
Q Consensus 601 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~vt~~g~~~~~~g~~~g~~~~~--------~~~~~~~~~~ 672 (1099)
...++...|.+.++|+.+.||.... ..+...+.+.
T Consensus 744 -------------------------------------~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~ 786 (1293)
T KOG0996|consen 744 -------------------------------------DGSLIEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERA 786 (1293)
T ss_pred -------------------------------------cceeecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHH
Confidence 1235556676666655555552211 1133334444
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 001328 673 IMRNTKTINAREEEV-------EKLISQ---LDQKITEHVTEQQKTDAKRAHDKSELEQLKQDIANAN---KQKQIISKA 739 (1099)
Q Consensus 673 l~~l~~~~~~l~~~l-------~~~~~~---l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~ 739 (1099)
+..+......+..++ ..++.. +...+..+...++.+...+..+...+..++....... ..+..++..
T Consensus 787 l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ 866 (1293)
T KOG0996|consen 787 LSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQ 866 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHH
Confidence 444433333333332 221111 3333333333333333333333333333333221111 112222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 740 LENKEKSLADVRTQLDQLEASMAMKQAEMNTDLIDHLSLDEKNLLSRLNPEITELKEKLITCRTDRIEYETRKAELETNL 819 (1099)
Q Consensus 740 ~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l 819 (1099)
+..+..++..+...-.. +.++..++..+.......+... ...+..+...++.+...+..+...+......+..++..+
T Consensus 867 ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~q-k~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l 944 (1293)
T KOG0996|consen 867 IEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQ-KDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKL 944 (1293)
T ss_pred HHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHh-HHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHH
Confidence 34444444444321111 3555555555554433222222 244555555566666666655555555555555666555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 820 TTNLMRRKQELEALISSAENDVMLSEAESKKQELADAKSFVEDARQELKRVSDSIVQLTKELNKIKDEKTKLKTLEDNYE 899 (1099)
Q Consensus 820 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (1099)
.++...+..++..+..+... +..+.....++..++.+..+.+.++..++..+...++........+....-++.
T Consensus 945 -~~le~~~~~~e~e~~~L~e~-----~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~ 1018 (1293)
T KOG0996|consen 945 -SELEREIEDTEKELDDLTEE-----LKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIE 1018 (1293)
T ss_pred -HHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 55566666666666665544 333333333344444444444444444444444444444444444444333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001328 900 RKLQDDARELEQLLSRRNILL 920 (1099)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~ 920 (1099)
..++.....+.........+.
T Consensus 1019 ~K~e~~~~~l~e~~~~~~~~~ 1039 (1293)
T KOG0996|consen 1019 NKLEAINGELNEIESKIKQPE 1039 (1293)
T ss_pred HHHHHHHHHHHHHHhhhhhHH
Confidence 444444444444444433333
No 25
>PRK10869 recombination and repair protein; Provisional
Probab=99.95 E-value=7.1e-24 Score=237.10 Aligned_cols=314 Identities=16% Similarity=0.183 Sum_probs=203.0
Q ss_pred eeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEEE
Q 001328 2 HIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEIV 81 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~~ 81 (1099)
+|.+|.|.||+.|...+ + +|+||+|+|+||||||||+|++||.|+||+.+. .++|+.|.+ .|.|+++
T Consensus 1 ML~~L~I~nf~~i~~~~-i-~f~~glnvitGetGaGKS~ildAi~~llG~r~~-------~~~ir~g~~----~a~Ve~~ 67 (553)
T PRK10869 1 MLAQLTISNFAIVRELE-I-DFQSGMTVITGETGAGKSIAIDALGLCLGGRAE-------ASMVRPGAT----RADLCAR 67 (553)
T ss_pred CccEEEEcccccceeeE-E-ecCCCcEEEECCCCCChHHHHHHHHHHhCCCcc-------cccccCCCC----cEEEEEE
Confidence 47899999999996655 4 499999999999999999999999999997332 267888876 7999999
Q ss_pred EeCCCCCC--------CC-CCccEEEEEEe-ecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCC
Q 001328 82 FDNSDNRI--------PV-DKEEVRLRRTI-GLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMK 151 (1099)
Q Consensus 82 f~~~~~~~--------~~-~~~~~~i~R~~-~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~ 151 (1099)
|+.++... .+ ++.++.|+|.+ ..|.+.|+|||++++...+.++...+ +.+.+|+. ....++
T Consensus 68 F~~~~~~~~~~~l~~~~~~~~~~~~i~R~i~~~g~s~~~INg~~v~~~~l~~l~~~l-------i~ihgQ~~--~~~ll~ 138 (553)
T PRK10869 68 FSLKDTPAALRWLEDNQLEDGNECLLRRVISSDGRSRGFINGTPVPLSQLRELGQLL-------IQIHGQHA--HQLLLK 138 (553)
T ss_pred EecCCChHHHHHHHhcCCCCCCeEEEEEEEecCCcceEEECCeeccHHHHHHHHHhh-------hheeCcCh--HHHhcC
Confidence 98755321 11 34578999998 56789999999999999999996543 44566664 445589
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 001328 152 DSERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRK-------YQQLDKQRKSLE 224 (1099)
Q Consensus 152 ~~~~~~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-------~~~l~~~~~~~~ 224 (1099)
|..++.+|++++|...+......+...+..+...+..+.........+++-++-+.+.++. +.++..++..+.
T Consensus 139 ~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~ 218 (553)
T PRK10869 139 PEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLA 218 (553)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 9999999999999888888888888888888888888888888888888888887777766 444555555443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-h-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 225 YTIYDKELHDARQKLLEVDDTRTR-F-SDESAKMYNSLLDAQEKSKDSDKRFKDLMKEVQTLNKEKEAIEKRLTEAIKNQ 302 (1099)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 302 (1099)
... .+...+..+...+.. - ..-+..+...+ ..-..+......+..+...+..+...++.+...+..+...+
T Consensus 219 n~e------~i~~~~~~~~~~L~~~~~~~~~~~l~~~~-~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 291 (553)
T PRK10869 219 NSG------QLLTTSQNALQLLADGEEVNILSQLYSAK-QLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRL 291 (553)
T ss_pred HHH------HHHHHHHHHHHHhcCCCcccHHHHHHHHH-HHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 321 111111111111111 0 00011111111 11111122333444444445555555555555555444444
Q ss_pred HHhHhhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 001328 303 TAFELDVKDIQERISGNSQARDDAKKQLRSLLEEIDDSSKEL 344 (1099)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 344 (1099)
.--..++..++.++..+.....++...+..+-.....+..++
T Consensus 292 ~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL 333 (553)
T PRK10869 292 DLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQ 333 (553)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 444455566666665555555555444444444444443333
No 26
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.95 E-value=7.2e-24 Score=240.97 Aligned_cols=189 Identities=21% Similarity=0.289 Sum_probs=157.4
Q ss_pred eeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEEE
Q 001328 2 HIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEIV 81 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~~ 81 (1099)
+|.+|.|.||++|....+. |+||+|+|+||||||||+|++||.|++|+.. ..++|+.|+. .|.|+++
T Consensus 1 Ml~~l~i~nf~~~~~~~i~--f~~g~~vitG~nGaGKS~ll~al~~~~g~~~-------~~~~i~~~~~----~~~v~~~ 67 (563)
T TIGR00634 1 MLTELRINNFALIRVLTVE--FERGLTVLTGETGAGKSMIIDALSLLGGQRA-------GASRVRSGEN----RAVVEGR 67 (563)
T ss_pred CceEEEEcceeeeeeeEEe--cCCCeEEEECCCCCCHHHHHHHHHHHhCcCc-------hHHHhcCCCC----eEEEEEE
Confidence 4889999999999776554 9999999999999999999999999998842 2367888876 7899999
Q ss_pred EeCCCCC-----------CCCC--CccEEEEEEe-ecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHh
Q 001328 82 FDNSDNR-----------IPVD--KEEVRLRRTI-GLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASL 147 (1099)
Q Consensus 82 f~~~~~~-----------~~~~--~~~~~i~R~~-~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~ 147 (1099)
|++++.. ++.+ ++++.|+|.+ ..|.+.|+|||++|+...+.+++. +++..+|+...+
T Consensus 68 f~~~~~~~~~~~~l~~~~~~~~~~~~~~ii~R~i~~~grs~~~iNg~~v~~~~l~~l~~---------~li~i~gQ~~~~ 138 (563)
T TIGR00634 68 FTTESLDDADYPALQAIELEEEDEDGEVILRRSISRDGRSRAYLNGKPVSASSLLEFTS---------ELLDLHGQHDQQ 138 (563)
T ss_pred EccCCCchHHHHHHHhcCCCcCCCCCeEEEEEEEcCCCceEEEECCEEccHHHHHHHhc---------CeEEEECchHHH
Confidence 9875532 1212 3578899999 567899999999999999999952 445567777888
Q ss_pred hcCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 148 TLMKDSERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRK 212 (1099)
Q Consensus 148 ~~~~~~~~~~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 212 (1099)
..++|..++.+|++++|+..+......+...+......+.++......+..+++.++.+.+.++.
T Consensus 139 ~l~~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 139 LLFRPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred HhcCHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999888888888888888888888888888888888888888887777766
No 27
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.2e-18 Score=188.07 Aligned_cols=82 Identities=12% Similarity=0.268 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHHhccCccCc--HHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 948 GVKELLKMLHRCNEQLQQFSHVN--KKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDQRKDESIERTFKGVAR 1025 (1099)
Q Consensus 948 ~~~~l~~~l~~l~~~l~~l~~vn--~~a~ee~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~~~~~f~~in~ 1025 (1099)
.+..|+.....+.+.+.. ..++ ..+.+.|.++..+...+.....-+...+..|++.-.+--..+...++..|..|
T Consensus 966 ~l~~Lq~k~~~l~k~vn~-~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~I-- 1042 (1174)
T KOG0933|consen 966 ELKKLQEKKEKLEKTVNP-KNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVNKDFGSI-- 1042 (1174)
T ss_pred HHHHhhHHHHHHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--
Confidence 678888899999888754 2233 36888899999999999999999999999999999988889999999999999
Q ss_pred HHHHHHHh
Q 001328 1026 HFREVFSE 1033 (1099)
Q Consensus 1026 ~f~~~f~~ 1033 (1099)
|+.+.|-
T Consensus 1043 -Fs~LLPg 1049 (1174)
T KOG0933|consen 1043 -FSTLLPG 1049 (1174)
T ss_pred -HHHhCCC
Confidence 9999553
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.94 E-value=6.3e-17 Score=200.37 Aligned_cols=104 Identities=20% Similarity=0.295 Sum_probs=65.2
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchh-----hhhhhhccCCCCcceEEEEEEEEeCCCCC-C----C--
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSE-----DRHALLHEGAGHQVLSAFVEIVFDNSDNR-I----P-- 90 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~-----~~~~~i~~g~~~~~~~a~v~~~f~~~~~~-~----~-- 90 (1099)
++ |.|-|+|.||+|||||+.+|.+.+|..|..+.+. ++.+|.++.+. .+|..++...+|. + .
T Consensus 16 lD-G~t~i~GTNG~GKTTlLRlip~FYGa~p~rlv~k~~~rksF~~yYLP~~n-----SyIIYEY~R~~G~~~~vvl~~~ 89 (1201)
T PF12128_consen 16 LD-GHTHICGTNGVGKTTLLRLIPFFYGADPSRLVPKTSGRKSFDDYYLPYSN-----SYIIYEYQREDGQLCCVVLSRK 89 (1201)
T ss_pred cC-CceeeecCCCCcHHHHHHHHHHhcCCCccccCCccchhhhHHHHcCCCCC-----ceEEEeeeccCCceeEEEEeec
Confidence 44 7888999999999999999999998866654322 35566665554 4555555555442 1 0
Q ss_pred CCCccEEEEEEeecC-CCeEEeCCe------ecCHHHHHHHHHHcCCCCC
Q 001328 91 VDKEEVRLRRTIGLK-KDEYFLDGK------HITKTEVMNLLESAGFSRS 133 (1099)
Q Consensus 91 ~~~~~~~i~R~~~~~-~~~~~in~~------~~~~~~~~~l~~~~g~~~~ 133 (1099)
.+|..| -.|-+..+ ...|||+.. +.+..++..-+...|+..+
T Consensus 90 s~g~~V-~YRFId~~y~~e~fi~~~~~~~~~~~~~~e~~r~~~~~gv~~S 138 (1201)
T PF12128_consen 90 SDGRGV-QYRFIDAPYQRELFIDENNGDLVQALSMWELIRELRRKGVQVS 138 (1201)
T ss_pred CCCCce-eeeeccCccchhhcccccCccccccccHHHHHHHHHhCCCeee
Confidence 112122 24545333 566777543 3466677777777777753
No 29
>PF13514 AAA_27: AAA domain
Probab=99.94 E-value=2.5e-18 Score=212.74 Aligned_cols=138 Identities=16% Similarity=0.177 Sum_probs=91.0
Q ss_pred EEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEEEEeCCCCCCCCCCccEEEEEEeecCCCeE
Q 001328 30 VVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEY 109 (1099)
Q Consensus 30 I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~~f~~~~~~~~~~~~~~~i~R~~~~~~~~~ 109 (1099)
|+|||.+||||++.||+.+|||.|...+. +++|...+..++ + .+.+. +|..+.|.|..+.+++-+
T Consensus 1 IyGpNEAGKST~l~fI~~lLFGfp~r~~~----~f~~p~~~~r~G-g----~L~~~------~g~~~~i~R~k~~~~tl~ 65 (1111)
T PF13514_consen 1 IYGPNEAGKSTLLAFIRDLLFGFPTRSPY----NFYHPKNGLRYG-G----RLEDP------DGGELEIERRKGRKGTLL 65 (1111)
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCCc----ccCCCCCCCCce-e----EEEec------CCceEEEeecCCCCCceE
Confidence 79999999999999999999996654332 466655543222 2 22222 456779999987777888
Q ss_pred EeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHh-hcCCHH--HHHHHHHHh-cChHHHHHHHHHHHHHHHHH
Q 001328 110 FLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASL-TLMKDS--ERLDLLKEI-GGTRVYEERRRESLKIMQDT 182 (1099)
Q Consensus 110 ~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~-~~~~~~--~~~~~lee~-~g~~~~~~~~~e~~~~l~~~ 182 (1099)
..+|.|++...+..+|.++.-..+...|-|++..+..+ -.+... +.-.+|..+ +|+..+........+....+
T Consensus 66 ~~~g~~~~e~~L~~~Lgg~dr~~f~~iF~~d~~~L~~gG~~l~~~~gdlg~~Lf~agaG~~~l~~~~~~L~~ea~~L 142 (1111)
T PF13514_consen 66 DPDGQPLPEDWLAALLGGLDRETFEAIFSFDHEELREGGESLLEAEGDLGQLLFSAGAGLGSLSQVLKQLDKEADEL 142 (1111)
T ss_pred CCCCCCCCHHHHHHHHcCCCHHHHHHHHcCCHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHHHHHHh
Confidence 89999999999998887555445556677777776666 333322 355555554 56665554444444444433
No 30
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.1e-16 Score=168.99 Aligned_cols=320 Identities=14% Similarity=0.148 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 001328 179 MQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARQKLLEVDDTRTRFSDESAKMYN 258 (1099)
Q Consensus 179 l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 258 (1099)
..+....+.+....-..+..-+..++.....++.-.+-...+..++......++.-+..++..+...+..+.......-.
T Consensus 172 reeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e 251 (1200)
T KOG0964|consen 172 REESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPE 251 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccch
Confidence 33333444444444445555555555555555554444455555555555556666677777777777777655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Q 001328 259 SLLDAQEKSKDSDKRFKDLMKEVQTLNKEKEAIEKRLTEAIKNQTAFELDVKDIQERISGNSQARDDAKKQLRSLLEEID 338 (1099)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (1099)
.-......+...+..+..+..++.++...+..+..+...+.......-.....+.-++..++.++..-.+........++
T Consensus 252 ~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~ 331 (1200)
T KOG0964|consen 252 ESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQ 331 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHH
Confidence 55555555555555555555555555555555555444444444444444444444445555555444444445555556
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001328 339 DSSKELDKANTLYENKCIEEKKITKDIMEREKQLSILYQKQGRATQFSSKDARDKWLQKEIDDLERVHSSNLKQDQKLQE 418 (1099)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 418 (1099)
.+...+.+...++..+......+..+-..+...+..+......+.....+..+......+-.-+..++..+..-+.....
T Consensus 332 ~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke 411 (1200)
T KOG0964|consen 332 KVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKE 411 (1200)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 66666666666667777777777776667777777666665555444444444444444445566677777777776666
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001328 419 EIQRLKGDLKERDEYIESRKREIAYLESSISQSREGFNNHKTQRDKMQDERKSLWVKESELCAEIDKLKAEVEKAEKSLD 498 (1099)
Q Consensus 419 ~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 498 (1099)
....++.++..++..+...-.++..+...+.+....+..+......+...+..+......+..+-..++..+.++...+.
T Consensus 412 ~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~ 491 (1200)
T KOG0964|consen 412 QENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLS 491 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777777777777776666666666666666666666666666666666666666665554443
No 31
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.89 E-value=1.1e-22 Score=207.69 Aligned_cols=152 Identities=35% Similarity=0.622 Sum_probs=126.4
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc-cccccchhhhhhhhccCCCCcceEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLRSEDRHALLHEGAGHQVLSAFVE 79 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~~~~~~~~i~~g~~~~~~~a~v~ 79 (1099)
|+|++|.|.||++|.+.+++.+|+||+|+|+||||||||||++||.|+||+ ..+..+.....++|+.+.......++|.
T Consensus 1 m~i~~~~~~~f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~ 80 (251)
T cd03273 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVT 80 (251)
T ss_pred CEeeEEEEeCccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEE
Confidence 999999999999999998753599999999999999999999999999998 4567777777788876544345578999
Q ss_pred EEEeCCCCCC-CC---CCccEEEEEEeecC-CCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCH
Q 001328 80 IVFDNSDNRI-PV---DKEEVRLRRTIGLK-KDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKD 152 (1099)
Q Consensus 80 ~~f~~~~~~~-~~---~~~~~~i~R~~~~~-~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~ 152 (1099)
++|+|++... |. ....++|.|.+..+ ...|++|++.+...++.++|..+|++.+++.++|.||+|..++++.+
T Consensus 81 ~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~ 158 (251)
T cd03273 81 IVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGG 158 (251)
T ss_pred EEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHH
Confidence 9999986542 22 24478999998543 45677898888889999999999998777889999999999998743
No 32
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=3.9e-14 Score=153.48 Aligned_cols=152 Identities=20% Similarity=0.277 Sum_probs=98.6
Q ss_pred CeeeEEEEecccccccccccccCCCC-cEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQ-VNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVE 79 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~-~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~ 79 (1099)
|+|.+|+|+||+.|.+.++. |.+. +++|+|||.+|||||+..|.-+|+|.|...+... +....+++.| +.
T Consensus 1 MrI~sl~I~gYGKFs~r~~d--f~~s~f~vI~G~NEAGKSTl~sFI~smlFGfP~~sk~~~----~eP~~Gg~yG-G~-- 71 (984)
T COG4717 1 MRIQSLEIVGYGKFSERHFD--FGESKFQVIYGENEAGKSTLFSFIHSMLFGFPTSSKYPR----LEPKQGGQYG-GR-- 71 (984)
T ss_pred CceeEEEeeeccchhhhhhh--ccCCceEEEecCccccHHHHHHHHHHHHcCCCCCCCCCC----CCcccCCCcc-cE--
Confidence 99999999999999999987 7764 9999999999999999999999999665433322 2222222111 11
Q ss_pred EEEeCCCCCCCCCCccEEEEEEeecC---CCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHH
Q 001328 80 IVFDNSDNRIPVDKEEVRLRRTIGLK---KDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERL 156 (1099)
Q Consensus 80 ~~f~~~~~~~~~~~~~~~i~R~~~~~---~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~ 156 (1099)
++..++ .|..+.|.|..++. ...|+.||..-....+..+|.+..-..+...|-++-..+..|-..+.+...
T Consensus 72 L~~~~~------~~~~~~IER~kgsa~gdvkvylpdG~v~~~~~L~k~lg~iDR~tye~IfSFDv~gLQeih~ln~k~i~ 145 (984)
T COG4717 72 LVAIDR------EGGAYRIERNKGSAIGDVKVYLPDGNVGSKTLLSKLLGSIDRNTYEAIFSFDVDGLQEIHELNSKGIL 145 (984)
T ss_pred EEEecC------CCceEEEEeccCcccCCceEECCCCCccchHHHHHHHhhhhHHHHHHHHhcchhhhHHHHHhhHhhHH
Confidence 223333 45677999988542 456888998777777777776554332223333343444455555555544
Q ss_pred HH--HHHhcChHH
Q 001328 157 DL--LKEIGGTRV 167 (1099)
Q Consensus 157 ~~--lee~~g~~~ 167 (1099)
.+ +...+|..-
T Consensus 146 ~~LL~sgt~G~~~ 158 (984)
T COG4717 146 GYLLFSGTSGSPA 158 (984)
T ss_pred HHHHHhccCCCcc
Confidence 44 333455443
No 33
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.89 E-value=1.5e-18 Score=201.82 Aligned_cols=166 Identities=19% Similarity=0.241 Sum_probs=107.8
Q ss_pred CeeeEEEEecccccccccccccCC----CCcEEEEcCCCCChhHHHHHHHHHhccc--ccccchh-hhh----hhhccCC
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFS----PQVNCVVGANGSGKTNFFHAIRFVLSDI--FQNLRSE-DRH----ALLHEGA 69 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~----~~~~~I~G~NGsGKS~i~~ai~~~Lg~~--~~~~~~~-~~~----~~i~~g~ 69 (1099)
|+|++|.|.||++|.+.+.+ +|+ +++++|+|||||||||+++||+|||+|. .+..++. +.. ++++.+.
T Consensus 1 M~i~~l~l~nf~~~~~~~~~-~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~LyG~~~~~~~~~~~~y~~~l~~~~n~~~ 79 (650)
T TIGR03185 1 MIILQLTLENFGPYRGRQTF-DLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYGKRALCSGRGNKSYEQYLRGLINRQA 79 (650)
T ss_pred CcccEEEEeceEEEcCCcee-eeecCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccccccCCccCcHHHHHHHHhcccC
Confidence 99999999999999987665 465 3589999999999999999999999882 2233332 222 3333322
Q ss_pred CCcceEEEEEEEEeCCCCCCCCCCccEEEEEEeec----CCCeE--EeCCeec--CHHHHHHHHHHcCCCCCCCceeecC
Q 001328 70 GHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGL----KKDEY--FLDGKHI--TKTEVMNLLESAGFSRSNPYYVVQQ 141 (1099)
Q Consensus 70 ~~~~~~a~v~~~f~~~~~~~~~~~~~~~i~R~~~~----~~~~~--~in~~~~--~~~~~~~l~~~~g~~~~~~~~~i~q 141 (1099)
.+...|+|+++|.+.++. ....++|+|.+.. .+..+ +.+|.+. ......+++..+.......|||+..
T Consensus 80 -~~~~~~~V~l~f~~~~~~---~~~~y~i~R~w~~~~k~~~~~l~v~~~~~~~~~~~~~~~~~i~~ilp~~~~~~FfFDG 155 (650)
T TIGR03185 80 -GKTNPASITLTFSVVEGG---KRHEYTLVRSWHINNKDVKEKLTVYKDDEEDDSLNDIWDEFINELLPLELADLFFFDG 155 (650)
T ss_pred -CCCCCeEEEEEEEEccCC---ceEEEEEEEEecCCCCCCCCcEEEEECCcccchhhHHHHHHHHHhCCHhHHHHhcccH
Confidence 234578999999764321 1235689998721 12232 4466332 1223444555432222345888888
Q ss_pred chHhHhhcC--CHHHHHHHHHHhcChHHHHHH
Q 001328 142 GKIASLTLM--KDSERLDLLKEIGGTRVYEER 171 (1099)
Q Consensus 142 g~i~~~~~~--~~~~~~~~lee~~g~~~~~~~ 171 (1099)
.+|..|+.. .+..+...+..+.|+..|..-
T Consensus 156 E~I~~la~~~~~~~~l~~Ai~~LlGl~~~~~L 187 (650)
T TIGR03185 156 EKIEALANPDRLASLLKEAIEVLLGLDLIDRL 187 (650)
T ss_pred HHHHHHhccccchHHHHHHHHHHhCcHHHHHH
Confidence 889988863 233367788888999886543
No 34
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.88 E-value=4.7e-13 Score=163.35 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHcCCC-CCCCceeecCchHhHhhcCCHHHHHHHHHHh-cChHHHHHH
Q 001328 117 TKTEVMNLLESAGFS-RSNPYYVVQQGKIASLTLMKDSERLDLLKEI-GGTRVYEER 171 (1099)
Q Consensus 117 ~~~~~~~l~~~~g~~-~~~~~~~i~qg~i~~~~~~~~~~~~~~lee~-~g~~~~~~~ 171 (1099)
...-+.++..+.++. ......||..|-+..+-++++.....++-.+ +-+..|-.+
T Consensus 733 ~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r 789 (1930)
T KOG0161|consen 733 CEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLAR 789 (1930)
T ss_pred HHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555444432 2234566777888888887777666665544 445555444
No 35
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=1.6e-21 Score=197.96 Aligned_cols=144 Identities=30% Similarity=0.470 Sum_probs=123.7
Q ss_pred eeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCC--CcceEEEEEE
Q 001328 3 IKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAG--HQVLSAFVEI 80 (1099)
Q Consensus 3 i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~--~~~~~a~v~~ 80 (1099)
|++|+|.||++|.+.+.+ .|.+++++|+||||||||||++||.|+|++.++.+|.....++|+.|.. .+...+.|.+
T Consensus 1 i~~i~l~nf~~~~~~~~~-~~~~~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~ 79 (247)
T cd03275 1 LKRLELENFKSYKGRHVI-GPFDRFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTA 79 (247)
T ss_pred CcEEEEECccccCCCeee-cCCCCeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEE
Confidence 689999999999988777 4788899999999999999999999999986677787777889988764 2456899999
Q ss_pred EEeCCCCCCCCCCccEEEEEEeecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHH
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDS 153 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~ 153 (1099)
+|.+.++ ..+.++|.+..+.+.|++||+++...++.+++..+|++.+.+++++.||++..+..++|.
T Consensus 80 ~f~~~~~------~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~ 146 (247)
T cd03275 80 VYEDDDG------EEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPP 146 (247)
T ss_pred EEEcCCC------cEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCc
Confidence 9987643 345677777777788999999999999999999999997777888999999999999984
No 36
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.86 E-value=3.3e-18 Score=182.07 Aligned_cols=317 Identities=19% Similarity=0.255 Sum_probs=196.2
Q ss_pred eeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEEE
Q 001328 2 HIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEIV 81 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~~ 81 (1099)
+|.+|.|.||.-+..-+.. |++|+|||+|..|+|||-|+|||.+|||+.+.. ++|+.|.. .+.|+..
T Consensus 1 ML~~LsIknfaiIe~L~le--F~~GltVlTGETGAGKSIiidAl~lllG~ra~~-------~~VR~G~~----~a~v~a~ 67 (557)
T COG0497 1 MLLELSIKNFAIIEELELE--FEKGLTVLTGETGAGKSIIIDALGLLLGGRADA-------SLVRHGAK----RAEVEAI 67 (557)
T ss_pred CCcEEeeeheeeeeeeeee--ccCCceEEecCCCCcHhHHHHHHHHHhCCCCCc-------chhcCCCc----eeEEEEE
Confidence 4778999999999887765 999999999999999999999999999995432 78888887 7899999
Q ss_pred EeCCCCC----C---CCCC-ccEEEEEEe-ecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCH
Q 001328 82 FDNSDNR----I---PVDK-EEVRLRRTI-GLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKD 152 (1099)
Q Consensus 82 f~~~~~~----~---~~~~-~~~~i~R~~-~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~ 152 (1099)
|+.+... + .++. +++.++|.+ ..|.|.|||||++|+...+.++-..+ .-|-+|+ .....++|
T Consensus 68 F~~~~~~~~~~L~e~gie~~~~iilrR~i~~~GrSr~~INg~~Vs~~~L~~l~~~L-------i~IHGQh--~~q~Ll~~ 138 (557)
T COG0497 68 FDLDNPPARAWLEENGIEDDEEVILRRVISADGRSRAFINGQPVSLAQLKELGQLL-------IDIHGQH--EHQSLLKP 138 (557)
T ss_pred ecCCchHHHHHHHHcCCCCcCcEEEEEEEcCCCceeEEECCEEeeHHHHHHHHHhh-------heeeccc--hHHHhcCh
Confidence 9876111 1 1222 288888888 55679999999999999988885433 2244444 56667899
Q ss_pred HHHHHHHHHhcChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 001328 153 SERLDLLKEIGGTRVYEE-RRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRK-------YQQLDKQRKSLE 224 (1099)
Q Consensus 153 ~~~~~~lee~~g~~~~~~-~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-------~~~l~~~~~~~~ 224 (1099)
...+.+|+.++|...... ........+......+..+.....+...+.+-|+-+.++++. +..+..++..+.
T Consensus 139 ~~~r~lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLs 218 (557)
T COG0497 139 ELQRQLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLS 218 (557)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Confidence 999999999988776442 356666667777777777777766777777777766666655 444444444332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-h--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 225 YTIYDKELHDARQKLLEVDDTRTR-F--SDESAKMYNSLLDAQEKSKDSDKRFKDLMKEVQTLNKEKEAIEKRLTEAIKN 301 (1099)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 301 (1099)
.. ..+...+......+.. - ...+..+...... -..+......+..+...+.+....+.....++..+-..
T Consensus 219 n~------ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~-l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~ 291 (557)
T COG0497 219 NS------EKLAEAIQNALELLSGEDDTVSALSLLGRALEA-LEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDE 291 (557)
T ss_pred hH------HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH-HHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 21 1111111111111110 0 0001111111111 11122233344444444554444555555555555555
Q ss_pred HHHhHhhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 302 QTAFELDVKDIQERISGNSQARDDAKKQLRSLLEEIDDSSKELDKA 347 (1099)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 347 (1099)
+..-..++.....++..+..-..++...+..+-.-...+..++..+
T Consensus 292 le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L 337 (557)
T COG0497 292 LEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQL 337 (557)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 5444455666666666666555555555555555444444444443
No 37
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.85 E-value=5.6e-12 Score=154.20 Aligned_cols=75 Identities=12% Similarity=0.215 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 001328 694 LDQKITEHVTEQQKTDAKRAHDKSELEQLKQDIANANKQKQIISKALENKEKS-LADVRTQLDQLEASMAMKQAEM 768 (1099)
Q Consensus 694 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~l~~~l~~~~~~~ 768 (1099)
+...+..++.+...+..++..-...+..+...+..+..+.............. .+.++.....+...+..++..+
T Consensus 1320 l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~ 1395 (1930)
T KOG0161|consen 1320 LENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQI 1395 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44555555555555555555555555555555555555544444444433332 3333333333334444444333
No 38
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=1.7e-20 Score=191.98 Aligned_cols=149 Identities=76% Similarity=1.169 Sum_probs=128.4
Q ss_pred eeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEEEE
Q 001328 3 IKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEIVF 82 (1099)
Q Consensus 3 i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~~f 82 (1099)
|++|+|.|||+|.+...+.+|+|++++|+||||||||||++||.|+||...+.++...+.++|+.|.+.....++|+++|
T Consensus 1 i~~i~~~nfksy~~~~~~~~~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~ 80 (243)
T cd03272 1 IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIF 80 (243)
T ss_pred CcEEEEeCccCcccCcccccCCCCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEE
Confidence 68999999999999887656999999999999999999999999999984333676667799999887666789999999
Q ss_pred eCCCCCCCCCCccEEEEEEeecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCC
Q 001328 83 DNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMK 151 (1099)
Q Consensus 83 ~~~~~~~~~~~~~~~i~R~~~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~ 151 (1099)
++.+..+++...++.++|.++.....|++++..++..++..++..+|+...++++++.||.+..++.+.
T Consensus 81 ~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~ 149 (243)
T cd03272 81 DNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMK 149 (243)
T ss_pred EcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhcc
Confidence 998887776777899999997767789999998999999999999999876777888999988887664
No 39
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.83 E-value=2.9e-20 Score=186.99 Aligned_cols=137 Identities=35% Similarity=0.630 Sum_probs=108.8
Q ss_pred eeeEEEEecccccc-cccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc-cccccchhhhhhhhcc-CCCCcceEEEE
Q 001328 2 HIKQVIIEGFKSYR-EQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLRSEDRHALLHE-GAGHQVLSAFV 78 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~-~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~~~~~~~~i~~-g~~~~~~~a~v 78 (1099)
||++|+|.||++|. ....+ +|+|++|+|+||||||||||++||.||||+ ..+.+|.....++|+. +.......|.|
T Consensus 1 ~I~~l~i~nFr~~~~~~~~~-~~~~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V 79 (220)
T PF02463_consen 1 MIKSLEIENFRNFKGKNAEL-SFSPGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEV 79 (220)
T ss_dssp EEEEEEEESBTTC-SCEEEE-ETTSSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEE
T ss_pred CccEEEEcCceEEecCeEEE-ecCCCCEEEEcCCCCCHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
Confidence 69999999999997 44455 699999999999999999999999999998 6667888888999988 44445668999
Q ss_pred EEEEeCCCCCCCCCCccEEEEEEeec-CCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCch
Q 001328 79 EIVFDNSDNRIPVDKEEVRLRRTIGL-KKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGK 143 (1099)
Q Consensus 79 ~~~f~~~~~~~~~~~~~~~i~R~~~~-~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~ 143 (1099)
++.|++.+...+.....+.|.|.+.. +.+.|++|+++++.+++..++...++... ..++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~----~lSgGE 141 (220)
T PF02463_consen 80 ELIFDNSDEEFELDKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE----FLSGGE 141 (220)
T ss_dssp EEEEECTTEESSSSSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT----GS-HHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccc
Confidence 99999998777778888999999854 56799999999999999999998877753 455665
No 40
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.82 E-value=5.3e-12 Score=133.53 Aligned_cols=102 Identities=17% Similarity=0.289 Sum_probs=66.5
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc-------ccc--ccchhhhhhhhccC---
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD-------IFQ--NLRSEDRHALLHEG--- 68 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~-------~~~--~~~~~~~~~~i~~g--- 68 (1099)
++|.+|.+.||++|. +.++ |+..+-.+++|..||||||++|||.-||-+ ++. +.+..++..+|...
T Consensus 15 FRL~~iqliNWGTF~-T~~~-~~T~~G~LvTG~~GSGKSTLIDAITavLlP~~kl~~N~AA~A~t~~RSL~tYi~G~~ra 92 (1104)
T COG4913 15 FRLSRIQLINWGTFH-TVDI-PVTREGILVTGGSGSGKSTLIDAITAVLLPQGKLRFNSAAQANTPRRSLVTYIRGAWRA 92 (1104)
T ss_pred eeeeEEEEeeccccc-eeee-eEeccceEEecCCCCCchhHHHHHHHHhcccchhhcccccccCCchhHHHHHHHHHHhh
Confidence 478999999999997 4445 566666899999999999999999999854 111 11222333444321
Q ss_pred -------CC------CcceEEEEEEEEeCCCCCCCCCCccEEEEEEe---ecCCCeEE
Q 001328 69 -------AG------HQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTI---GLKKDEYF 110 (1099)
Q Consensus 69 -------~~------~~~~~a~v~~~f~~~~~~~~~~~~~~~i~R~~---~~~~~~~~ 110 (1099)
.- +...+.-|.++|.|+ .+.++++.-.+ .+..+.||
T Consensus 93 q~~~~~~~~~~~~LR~~a~YSlv~~~~~NG------~~~~~TL~~iF~LK~S~~~~~~ 144 (1104)
T COG4913 93 QEDPLQDQIVSTYLRPRATYSLVGLTYSNG------EGVEHTLVAIFYLKSSDISSYY 144 (1104)
T ss_pred ccCccccceeeeeeccccceEEEEEEeecC------CCeeEEEEEEEEeeccCCCcee
Confidence 00 123467788899885 45566777766 33344554
No 41
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=7e-11 Score=132.01 Aligned_cols=168 Identities=11% Similarity=0.136 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001328 171 RRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARQKLLEVDDTRTRFS 250 (1099)
Q Consensus 171 ~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 250 (1099)
....+.........++..+..............+.......++......+..++.......+.....++......+..+.
T Consensus 168 E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~ 247 (1141)
T KOG0018|consen 168 EMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLK 247 (1141)
T ss_pred HHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHH
Confidence 34445555666666677777777666666666666656666666666777777777777777777788888877777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHhcchhhHHHHHHHH
Q 001328 251 DESAKMYNSLLDAQEKSKDSDKRFKDLMKEVQTLNKEKEAIEKRLTEAIKNQTAFELDVKDIQERISGNSQARDDAKKQL 330 (1099)
Q Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1099)
.........+..........-..+......+...+..+.. ..++-.+..........+...+..+...+.........+
T Consensus 248 ~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~i 326 (1141)
T KOG0018|consen 248 ERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETI 326 (1141)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHH
Confidence 7776666666666655555555666655555555555554 333333333333333333333333333333333333333
Q ss_pred HHHHHHHHH
Q 001328 331 RSLLEEIDD 339 (1099)
Q Consensus 331 ~~l~~~~~~ 339 (1099)
..++.++..
T Consensus 327 e~~ek~l~a 335 (1141)
T KOG0018|consen 327 ERLEKELKA 335 (1141)
T ss_pred HHHHHHHHH
Confidence 333333333
No 42
>PRK14079 recF recombination protein F; Provisional
Probab=99.81 E-value=3.5e-18 Score=181.07 Aligned_cols=138 Identities=25% Similarity=0.358 Sum_probs=108.5
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|+|.+|+|.||++|.+.++. |+||+|+|+||||||||||++||.|++|++ .|.....++|+.|.+ .++|.+
T Consensus 1 M~i~~l~l~nfRn~~~~~l~--f~~g~nvi~G~NGsGKT~lLeAI~~~~~gs---~r~~~~~~lI~~g~~----~~~v~~ 71 (349)
T PRK14079 1 MRLLSLRQLNYRNLAPPTLA--FPPGVTAVVGENAAGKTNLLEAIYLALTGE---LPNGRLADLVRFGEG----EAWVHA 71 (349)
T ss_pred CEEEEEEEeccCCcccceEE--eCCCeEEEECCCCCCHHHHHHHHHHHhcCC---CCCCcHHhheecCCC----cEEEEE
Confidence 99999999999999988754 999999999999999999999999999873 344566789998886 577888
Q ss_pred EEeCCCCCCCCCCccEEEEEEeecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHHHHHH
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLK 160 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~~~le 160 (1099)
.|...++ ...+...+..+++.|+|||++++..++..++ +..+|.|++.. ++..+|..||.+|+
T Consensus 72 ~~~~~~~-------~~~~~~~~~~~~~~~~ing~~~~~~~l~~~~---------~~v~~~p~d~~-li~~~p~~RR~fLD 134 (349)
T PRK14079 72 EVETGGG-------LSRLEVGLGPGRRELKLDGVRVSLRELARLP---------GAVLIRPEDLE-LVLGPPEGRRAYLD 134 (349)
T ss_pred EEEeCCC-------eEEEEEEEEcCceEEEECCeecCHHHHHhhh---------cEEEEecCchH-hhhCCHHHHHHHHH
Confidence 8865432 1234444444567899999999888777764 34556788754 44569999999999
Q ss_pred HhcC
Q 001328 161 EIGG 164 (1099)
Q Consensus 161 e~~g 164 (1099)
.+.+
T Consensus 135 ~~l~ 138 (349)
T PRK14079 135 RLLS 138 (349)
T ss_pred HHHH
Confidence 8764
No 43
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=6e-19 Score=182.08 Aligned_cols=137 Identities=27% Similarity=0.422 Sum_probs=111.1
Q ss_pred eeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEEEE
Q 001328 3 IKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEIVF 82 (1099)
Q Consensus 3 i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~~f 82 (1099)
|.+|+|.||++|.... + +|+||+|+|+||||||||||++||.|++|+.. ..++++.|.. .+.|+++|
T Consensus 1 l~~l~i~nf~~~~~~~-i-~~~~~~~~i~G~nGsGKS~il~ai~~~~~~~~-------~~~~~~~~~~----~~~v~~~~ 67 (276)
T cd03241 1 LLELSIKNFALIEELE-L-DFEEGLTVLTGETGAGKSILLDALSLLLGGRA-------SADLIRSGAE----KAVVEGVF 67 (276)
T ss_pred CcEEEEeCccceeeeE-E-EeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCC-------hHHHhhCCCC----eEEEEEEE
Confidence 5789999999997655 4 49999999999999999999999999998841 2377877776 67899999
Q ss_pred eCCCCCC---------CCCCccEEEEEEe-ecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCH
Q 001328 83 DNSDNRI---------PVDKEEVRLRRTI-GLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKD 152 (1099)
Q Consensus 83 ~~~~~~~---------~~~~~~~~i~R~~-~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~ 152 (1099)
.+.+... ..++.++.|+|.+ ..+.+.|+|||++++.+++..++ .+++..+|++..+..++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~i~R~i~~~~~s~~~Ing~~vsl~~l~~i~---------~~li~i~gq~~~~~l~~~ 138 (276)
T cd03241 68 DISDEEEAKALLLELGIEDDDDLIIRREISRKGRSRYFINGQSVTLKLLRELG---------SLLVDIHGQHDHQNLLNP 138 (276)
T ss_pred ecCCchHHHHHHHHcCCCCCCeEEEEEEEecCCceEEEECCEEECHHHHHHHH---------HhheEEECcHHHHHhcCh
Confidence 8766432 1234689999999 56689999999999999998885 245556777777777899
Q ss_pred HHHHHHHHH
Q 001328 153 SERLDLLKE 161 (1099)
Q Consensus 153 ~~~~~~lee 161 (1099)
..++.+|++
T Consensus 139 ~~~~~lLD~ 147 (276)
T cd03241 139 ERQLDLLDG 147 (276)
T ss_pred HHhHhhhhC
Confidence 888888877
No 44
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.9e-18 Score=177.67 Aligned_cols=138 Identities=25% Similarity=0.347 Sum_probs=107.6
Q ss_pred eeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEEEE
Q 001328 3 IKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEIVF 82 (1099)
Q Consensus 3 i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~~f 82 (1099)
|.+|.|.||++|.+.+ + +|+||+|+|+||||||||||++||.|++|+.. .+.....++|+.|++ .+.|+++|
T Consensus 1 l~~l~i~nfr~~~~~~-~-~~~~~~~~i~G~NGsGKS~ll~Ai~~~~~~~~--~r~~~~~~~i~~~~~----~~~v~~~f 72 (270)
T cd03242 1 LKSLELRNFRNYAELE-L-EFEPGVTVLVGENAQGKTNLLEAISLLATGKS--HRTSRDKELIRWGAE----EAKISAVL 72 (270)
T ss_pred CcEEEEeCCcCcceeE-E-ecCCCeEEEECCCCCCHHHHHHHHHHhccCCC--CCCCCHHHHHhcCCC----CEEEEEEE
Confidence 5789999999998765 4 49999999999999999999999999998732 233345688988876 68899999
Q ss_pred eCCCCCCCCCCccEEEEEEe-ecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHHHHHHH
Q 001328 83 DNSDNRIPVDKEEVRLRRTI-GLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKE 161 (1099)
Q Consensus 83 ~~~~~~~~~~~~~~~i~R~~-~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~~~lee 161 (1099)
++.+. .+.|.|.+ ..+++.|++||.+++. +.++...+ ..+..|+....++..+|..|+.+|+.
T Consensus 73 ~~~~~-------~~~i~~~~~~~~~~~~~ing~~~~~--l~~l~~~l-------~~i~~~~~~~~l~~~~p~~rr~~lD~ 136 (270)
T cd03242 73 ERQGG-------ELALELTIRSGGGRKARLNGIKVRR--LSDLLGVL-------NAVWFAPEDLELVKGSPADRRRFLDR 136 (270)
T ss_pred EeCCC-------eEEEEEEEEcCCceEEEECCeeccC--HHHHhCcC-------cEEEEecchhhhhcCCHHHHHHHHHH
Confidence 87643 35788887 4567889999999865 33332211 33445566667888999999999999
Q ss_pred hcC
Q 001328 162 IGG 164 (1099)
Q Consensus 162 ~~g 164 (1099)
+.+
T Consensus 137 ~~~ 139 (270)
T cd03242 137 LLG 139 (270)
T ss_pred HHH
Confidence 877
No 45
>PRK00064 recF recombination protein F; Reviewed
Probab=99.78 E-value=1.2e-17 Score=178.17 Aligned_cols=139 Identities=26% Similarity=0.332 Sum_probs=110.0
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|+|.+|.|.||++|.+..+. |+||+|+|+||||||||||++||.+++++. ..|.....++|+.|.+ .+.|.+
T Consensus 1 M~i~~l~i~nfr~~~~~~l~--~~~~~~~i~G~NgsGKT~lleai~~l~~~~--s~r~~~~~~li~~g~~----~~~v~~ 72 (361)
T PRK00064 1 MYLTRLSLTDFRNYEELDLE--LSPGVNVLVGENGQGKTNLLEAIYLLAPGR--SHRTARDKELIRFGAE----AAVIHG 72 (361)
T ss_pred CEEEEEEEeCCCcccceEEE--ecCCeEEEECCCCCCHHHHHHHHHHhCCCC--CccCCChhHHHhcCCC----cEEEEE
Confidence 99999999999999876654 999999999999999999999999988762 2344556788998876 688999
Q ss_pred EEeCCCCCCCCCCccEEEEEEee-cCCCeEEeCCeec-CHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHHHH
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTIG-LKKDEYFLDGKHI-TKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDL 158 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~~-~~~~~~~in~~~~-~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~~~ 158 (1099)
+|++.+ ..+.|.|.+. .+.+.|++||+++ +..++..++.. ++..++-..++..+|..||.+
T Consensus 73 ~~~~~~-------~~~~i~~~~~~~~~~~~~ing~~~~~~~~l~~~~~~----------v~~~p~~~~l~~~~p~~RR~f 135 (361)
T PRK00064 73 RVEKGG-------RELPLGLEIDKKGGRKVRINGEPQRKLAELAGLLNV----------VLFTPEDLRLVKGGPSERRRF 135 (361)
T ss_pred EEEeCC-------cEEEEEEEEEcCCceEEEECCccccCHHHHhhhccE----------EEEccchhhhhcCCHHHHHHH
Confidence 997543 3457777774 4557899999999 77777777532 222333357888999999999
Q ss_pred HHHhcC
Q 001328 159 LKEIGG 164 (1099)
Q Consensus 159 lee~~g 164 (1099)
|+.+++
T Consensus 136 LD~~~~ 141 (361)
T PRK00064 136 LDRLLF 141 (361)
T ss_pred HHHHHh
Confidence 999866
No 46
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=3.4e-11 Score=152.12 Aligned_cols=132 Identities=19% Similarity=0.356 Sum_probs=89.2
Q ss_pred eeeEEEEecccccc----cccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc-cccccchhhhhhhhccCCC--Ccce
Q 001328 2 HIKQVIIEGFKSYR----EQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLRSEDRHALLHEGAG--HQVL 74 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~----~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~~~~~~~~i~~g~~--~~~~ 74 (1099)
+|++|.|.||+||. +.+.+ +|++|+|+|+||||||||||++||.|+|+| .++..+|. .+||.+.. .+..
T Consensus 2 ~~~kl~i~g~rSf~~~~~~~~~I-~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~---~~i~~~~~~~~~~~ 77 (1311)
T TIGR00606 2 KFLKMSILGVRSFGIEDKDKQII-DFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGN---TFVHDPKVAQETDV 77 (1311)
T ss_pred ccceeeeeceecCCCccccceee-ecccceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCc---eEecCCCcCccHhh
Confidence 58899999999996 46778 599999999999999999999999999998 44433442 34544321 2345
Q ss_pred EEEEEEEEeCCCCCCCCCCccEEEEEEee--cC-C----------CeEEeCCeecC----HHHHHH-HHHHcCCC--CCC
Q 001328 75 SAFVEIVFDNSDNRIPVDKEEVRLRRTIG--LK-K----------DEYFLDGKHIT----KTEVMN-LLESAGFS--RSN 134 (1099)
Q Consensus 75 ~a~v~~~f~~~~~~~~~~~~~~~i~R~~~--~~-~----------~~~~in~~~~~----~~~~~~-l~~~~g~~--~~~ 134 (1099)
.|+|.++|.+. +|..+.|.|.+. .+ + ..|+.||..++ ..++.. +...+|++ .+.
T Consensus 78 ~a~V~l~F~~~------~g~~~~v~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~~~~f~ 151 (1311)
T TIGR00606 78 RAQIRLQFRDV------NGEECAVVRSMVCTQKTKKTEFKTLEGVITRYKHGEKVSLSSKCAEIDREMISHLGVSKAVLN 151 (1311)
T ss_pred hheeEEEEEcC------CCCEEEEEeeeeeeeccCcccchhhhhhheecCCCceeeccccHHHHHHHHHHHhCCCHHHHh
Confidence 78999999643 345678888771 11 1 24567776542 335543 44467776 223
Q ss_pred CceeecCch
Q 001328 135 PYYVVQQGK 143 (1099)
Q Consensus 135 ~~~~i~qg~ 143 (1099)
...|++||+
T Consensus 152 ~vi~~~Qge 160 (1311)
T TIGR00606 152 NVIFCHQED 160 (1311)
T ss_pred hceeeCCcc
Confidence 334555664
No 47
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.74 E-value=7.5e-10 Score=117.69 Aligned_cols=47 Identities=17% Similarity=0.332 Sum_probs=41.9
Q ss_pred eeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 2 HIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
++.+|++.||.+|...|+. ++.-+|.+.|.||+||||.|.|+..+|-
T Consensus 6 KfrSLTliNWNGFFARTFD--lDeLVTTLSGGNGAGKSTTMA~FvTALI 52 (1480)
T COG3096 6 KFRSLTLINWNGFFARTFD--LDELVTTLSGGNGAGKSTTMAAFVTALI 52 (1480)
T ss_pred ccceeeEeeccchhhhhcc--HHHHHHhccCCCCCcccchHHHHHHHHc
Confidence 4689999999999998876 7888999999999999999999877773
No 48
>PRK02224 chromosome segregation protein; Provisional
Probab=99.69 E-value=7.1e-09 Score=128.04 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ceEEEEE
Q 001328 999 EKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQG-GHGHLVM 1044 (1099)
Q Consensus 999 ~~l~~~i~~l~~~~~~~~~~~f~~in~~f~~~f~~lf~g-G~a~L~l 1044 (1099)
..|...+..+...++..+...|.. .|+.+|..+|++ +...|.+
T Consensus 718 ~~L~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~ 761 (880)
T PRK02224 718 EELESMYGDLRAELRQRNVETLER---MLNETFDLVYQNDAYSHIEL 761 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcCCCCeeEEEe
Confidence 445555566666666666555554 599999999965 5788887
No 49
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.66 E-value=2.8e-16 Score=153.90 Aligned_cols=108 Identities=22% Similarity=0.326 Sum_probs=88.9
Q ss_pred eeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccc-cccchhhhhhhhccCCCCcceEEEEEE
Q 001328 2 HIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIF-QNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~-~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
.|.+|+|.||++|.+ ..+ .|+||+|+|+||||||||||++||.|+||+.+ ...|.....++++.|.. .+.|++
T Consensus 2 ~i~~i~i~nfr~~~~-~~i-~~~~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~----~~~v~~ 75 (213)
T cd03277 2 SIVRIKLENFVTYDE-TEF-RPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCD----EGTIEI 75 (213)
T ss_pred eeEEEEEeCCCCcce-eEE-ecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCC----cEEEEE
Confidence 488999999999954 455 49999999999999999999999999999843 33455567788998876 688999
Q ss_pred EEeCCCCCCCCCCccEEEEEEeecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHH
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERL 156 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~ 156 (1099)
.|++.+.. +.+.++++++.||++.+++.++|.+++
T Consensus 76 ~~~~~~~~-----------------------------------------~~~~n~~~~~~q~~~~~~~~~~~~e~l 110 (213)
T cd03277 76 ELYGNPGN-----------------------------------------IQVDNLCQFLPQDRVGEFAKLSPIELL 110 (213)
T ss_pred EEEeCCCc-----------------------------------------cccCCceEEEchHHHHHHHhCChHhHh
Confidence 99765421 444577889999999999999999876
No 50
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=8.8e-15 Score=155.54 Aligned_cols=151 Identities=21% Similarity=0.273 Sum_probs=102.3
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|+|.+|.|.||++|.+..+. |+||+|+|+||||||||||++||.+++++. ..|.....++|+.|++ .+.|..
T Consensus 1 M~l~~L~i~nFR~~~~~~l~--~~~~~nvi~G~NGsGKT~lLeAi~~l~~~~--s~R~~~~~~li~~g~~----~~~v~~ 72 (365)
T TIGR00611 1 MYLSRLELTDFRNYDAVDLE--LSPGVNVIVGPNGQGKTNLLEAIYYLALGR--SHRTSRDKPLIRFGAE----AFVIEG 72 (365)
T ss_pred CEEEEEEEeCCcceeeeEEE--ECCCeEEEECCCCCCHHHHHHHHHHHcccC--CccccchhhHHhCCCC----eEEEEE
Confidence 99999999999999876654 999999999999999999999999887762 2244455688998886 788999
Q ss_pred EEeCCCCCCCCCCccEEEEEEeecCCCeEEeCCeec-CHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHHHHH
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHI-TKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLL 159 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~~~~~~~~~in~~~~-~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~~~l 159 (1099)
+|.+.++.+.+ .+...+........+|+.++ +..++...+. .++.+..-..++..+|..||.+|
T Consensus 73 ~~~~~~~~~~i-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----------~v~~~p~~~~L~~g~p~~RR~fL 137 (365)
T TIGR00611 73 RVSKGDREVTI-----PLEGLLKKKGKKAKVNIDGQDKLSDLAGLLP----------MQLFAPEDLTLVKGSPKYRRRFL 137 (365)
T ss_pred EEEeCCceEEE-----eEEEEEccCCCeEEECCCCCcCHHHHHhhcc----------EEEecCCCHHHhcCChHHHHHHH
Confidence 99765433211 12222221223466666655 4444444432 33333333468888999999999
Q ss_pred HH-hcCh-HHHHHHHHH
Q 001328 160 KE-IGGT-RVYEERRRE 174 (1099)
Q Consensus 160 ee-~~g~-~~~~~~~~e 174 (1099)
+. ++.+ ..|......
T Consensus 138 D~~~~~~~~~y~~~~~~ 154 (365)
T TIGR00611 138 DWGLFQVEPVYLSAWSD 154 (365)
T ss_pred HHHHHhcCHHHHHHHHH
Confidence 94 4443 334443333
No 51
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.63 E-value=8e-08 Score=116.23 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 863 ARQELKRVSDSIVQLTKELNKIKDEKTKLKTLEDNYERKLQDDARELEQLLSRRNILLAKQEEY 926 (1099)
Q Consensus 863 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1099)
++.........+.++...+..+...+..++..+..+..++......+..+.....++..+...+
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L 1297 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDL 1297 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444444444443333333
No 52
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.63 E-value=3.6e-08 Score=112.10 Aligned_cols=192 Identities=14% Similarity=0.241 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001328 171 RRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARQKLLEVDDTRTRFS 250 (1099)
Q Consensus 171 ~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 250 (1099)
.+..+...+......+..+...+.+.+..+..+..-....+....+..++.|........++..+...+...++....+.
T Consensus 222 ~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~ 301 (1074)
T KOG0250|consen 222 SLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQ 301 (1074)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777888888888888888888888888888899999999999998889999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHhcchhhHHHHHHHH
Q 001328 251 DESAKMYNSLLDAQEKSKDSDKRFKDLMKEVQTLNKEKEAIEKRLTEAIKNQTAFELDVKDIQERISGNSQARDDAKKQL 330 (1099)
Q Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1099)
..+......+..+...+...+..+..+.........++..+...+..+......++.++......+.........+...+
T Consensus 302 ~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I 381 (1074)
T KOG0250|consen 302 EKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQI 381 (1074)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888888888887777777777776666666666666666565655555
Q ss_pred HHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHH
Q 001328 331 RSLLEEI-DDSSKELDKANTLYENKCIEEKKIT 362 (1099)
Q Consensus 331 ~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (1099)
..++.+. ..+..++.+.+.++..+..+...++
T Consensus 382 ~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e 414 (1074)
T KOG0250|consen 382 ADLEKQTNNELGSELEERENKLEQLKKEVEKLE 414 (1074)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5555554 3344444444444444333333333
No 53
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.61 E-value=1.2e-15 Score=144.60 Aligned_cols=81 Identities=43% Similarity=0.558 Sum_probs=61.1
Q ss_pred eeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhccccccc-chhhhhhhhccCCCCcceEEEEEEE
Q 001328 3 IKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNL-RSEDRHALLHEGAGHQVLSAFVEIV 81 (1099)
Q Consensus 3 i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~-~~~~~~~~i~~g~~~~~~~a~v~~~ 81 (1099)
|++|+|.||++|.+.++. ++++++|+|+||||||||||++||.|+||+.+... +...+ .++++....+...|+|+++
T Consensus 1 i~~i~l~nf~~~~~~~~~-~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~ 78 (178)
T cd03239 1 IKQITLKNFKSYRDETVV-GGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLL-FLAGGGVKAGINSASVEIT 78 (178)
T ss_pred CcEEEEECccCCCCCEEe-cCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchh-hhcccccCCCCceEEEEEE
Confidence 579999999999998887 44445999999999999999999999999943333 33332 1123322233448999999
Q ss_pred EeCC
Q 001328 82 FDNS 85 (1099)
Q Consensus 82 f~~~ 85 (1099)
|+|+
T Consensus 79 f~~~ 82 (178)
T cd03239 79 FDKS 82 (178)
T ss_pred EECc
Confidence 9877
No 54
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=99.60 E-value=8.5e-16 Score=111.32 Aligned_cols=49 Identities=29% Similarity=0.494 Sum_probs=43.0
Q ss_pred eeEEEEecccccccccccccCCC-C-cEEEEcCCCCChhHHHHHHHHHhcccc
Q 001328 3 IKQVIIEGFKSYREQIATEPFSP-Q-VNCVVGANGSGKTNFFHAIRFVLSDIF 53 (1099)
Q Consensus 3 i~~l~l~~f~sf~~~~~~~~f~~-~-~~~I~G~NGsGKS~i~~ai~~~Lg~~~ 53 (1099)
|.+|.|.||++|.+ +.+ +|++ | +++|+||||||||||+|||.|+|++..
T Consensus 1 L~rl~L~Nw~~f~~-~~~-~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 1 LTRLQLVNWGSFDG-ETI-DFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CcEEEEeccCccCC-eEE-eecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 57999999999999 555 4885 3 899999999999999999999998843
No 55
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=99.58 E-value=1.7e-13 Score=139.60 Aligned_cols=155 Identities=24% Similarity=0.317 Sum_probs=108.6
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|+|.+|.|.||++|...... |+||+|+++|+||+||||||+||.++-.+ +..|.....++|..+.+ .+.|..
T Consensus 1 M~l~~L~L~nFRNy~~~~l~--~~p~~nvl~G~NgqGKTNlLEAI~~l~~g--rS~Rt~~~~~lir~~~~----~~~i~~ 72 (363)
T COG1195 1 MYLLSLLLRNFRNYAELDLD--LSPGVNVLVGENGQGKTNLLEAIYLLALG--RSHRTSRDKELIRTGAD----EAEISA 72 (363)
T ss_pred CceeeeehhhcCCcccceec--cCCCcEEEECCCCCchHHHHHHHHHHccc--cCccccchhHHHhcCCc----cEEEEE
Confidence 99999999999999887766 99999999999999999999999877655 23445555689999988 688888
Q ss_pred EEeCCCCCCCCCCccEEEEEEe-ecCCCeEEeCCeecC-HHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHHHH
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTI-GLKKDEYFLDGKHIT-KTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDL 158 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~-~~~~~~~~in~~~~~-~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~~~ 158 (1099)
.+....+ ..++.=.+ +.|.....+||.+++ ..++...+. ..++.-.+ -.++.-+|..||.+
T Consensus 73 ~v~~~~~-------~~~~~~~~~~~g~~~vring~~~~~~~el~g~l~---------~vlf~Ped-l~Lv~G~P~~RRrF 135 (363)
T COG1195 73 RVQRKGR-------EGTLGLQISKKGRRRVRINGTKARKLAELAGHLN---------VVLFTPED-LGLVKGSPSDRRRF 135 (363)
T ss_pred EEeeccc-------eeeeEEEeccCcceEEEECCcccccHHHHhhhCc---------eEEecccc-cccccCCHHHHHHH
Confidence 8876532 22333333 345556899998874 556555542 22222222 35778899999999
Q ss_pred HHHhcCh--HHHHHHHHHHHHHHH
Q 001328 159 LKEIGGT--RVYEERRRESLKIMQ 180 (1099)
Q Consensus 159 lee~~g~--~~~~~~~~e~~~~l~ 180 (1099)
|+-..+. ..|-.......+-+.
T Consensus 136 LD~~l~~~~p~y~~~~~~Y~k~lk 159 (363)
T COG1195 136 LDWLLFQIEPVYLEALSNYEKLLK 159 (363)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHH
Confidence 9876432 345444444444333
No 56
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.55 E-value=5.2e-07 Score=111.90 Aligned_cols=121 Identities=5% Similarity=0.088 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 001328 171 RRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSL--EYTIYDKELHDARQKLLEVDDTRTR 248 (1099)
Q Consensus 171 ~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (1099)
++..+..++....+.+..+...+..|+.+...+........++.....++..+ ....+...+......+..+...+..
T Consensus 301 kLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeelee 380 (1486)
T PRK04863 301 QLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEE 380 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666666555544422222222222 2223334445555555555555555
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 249 FSDESAKMYNSLLDAQEKSKDSDKRFKDLMKEVQTLNKEKEAI 291 (1099)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 291 (1099)
+...+..++..+..+..++..+...+..++..+..+...+..+
T Consensus 381 leeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~L 423 (1486)
T PRK04863 381 NEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQAL 423 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555554444433
No 57
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.55 E-value=9.9e-09 Score=117.28 Aligned_cols=170 Identities=16% Similarity=0.208 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 850 KQELADAKSFVEDARQELKRVSDSIVQLTKELNKIKDEKTKLKTLEDNYERKLQDDARELEQLLSRRNILLAKQEEYSKK 929 (1099)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1099)
..++..+...+..+...+......+..+...+..+...+..+.....++...+..+...-..+......+...+..+...
T Consensus 354 ekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~ 433 (569)
T PRK04778 354 EKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRY 433 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333333344444444455555555555555555555555444444444455555555666555
Q ss_pred HHh--cCCCChhhhhhhccCCHHHHHHHHHHHHHHhccCccCcHHHHH-HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001328 930 IRE--LGPLSSDAFDTYKRKGVKELLKMLHRCNEQLQQFSHVNKKALD-QYVNFTEQREELQRRQAELDAGDEKIKELIS 1006 (1099)
Q Consensus 930 l~~--~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~vn~~a~e-e~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~ 1006 (1099)
+.. +..+|..... ....+..++..+..+|+. ||||+.|++ +|..+..++.++..+..||..+...++..|.
T Consensus 434 l~k~~lpgip~~y~~-----~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iq 507 (569)
T PRK04778 434 LEKSNLPGLPEDYLE-----MFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQ 507 (569)
T ss_pred HHHcCCCCCcHHHHH-----HHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 3455655544 456788999999999999 999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 1007 VLDQRKDESIERTFKGVARHFREV 1030 (1099)
Q Consensus 1007 ~l~~~~~~~~~~~f~~in~~f~~~ 1030 (1099)
. ..+|..+|..||..|..-
T Consensus 508 y-----~nRfr~~~~~V~~~f~~A 526 (569)
T PRK04778 508 Y-----ANRYRSDNEEVAEALNEA 526 (569)
T ss_pred H-----HhccCCCCHHHHHHHHHH
Confidence 8 799999999999999985
No 58
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.52 E-value=1e-06 Score=110.44 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=11.4
Q ss_pred cCCCCChhHHHHHHHHHhcc
Q 001328 32 GANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 32 G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+|-++||-++.+ |-|..
T Consensus 49 v~k~~~rksF~~---yYLP~ 65 (1201)
T PF12128_consen 49 VPKTSGRKSFDD---YYLPY 65 (1201)
T ss_pred CCccchhhhHHH---HcCCC
Confidence 677778877664 66643
No 59
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.50 E-value=3.6e-14 Score=137.71 Aligned_cols=78 Identities=28% Similarity=0.493 Sum_probs=66.2
Q ss_pred eeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc-cccccchhhhhhhhccCCCCcceEEEEEEE
Q 001328 3 IKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLRSEDRHALLHEGAGHQVLSAFVEIV 81 (1099)
Q Consensus 3 i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~~~~~~~~i~~g~~~~~~~a~v~~~ 81 (1099)
|++|+|.||++|.+..+ +|++|+|+|+||||||||||++||.|++|+ .....++..+.++++.|.. .+.|.++
T Consensus 1 i~~l~l~nfr~~~~~~l--~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~----~~~i~~~ 74 (198)
T cd03276 1 IESITLKNFMCHRHLQI--EFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGES----SAKITVT 74 (198)
T ss_pred CeEEEEeCccceeeeEE--ecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCC----eEEEEEE
Confidence 67999999999976554 499999999999999999999999999998 4444567677889987765 6889999
Q ss_pred EeCCC
Q 001328 82 FDNSD 86 (1099)
Q Consensus 82 f~~~~ 86 (1099)
|++.+
T Consensus 75 ~~~~~ 79 (198)
T cd03276 75 LKNQG 79 (198)
T ss_pred EEcCC
Confidence 98865
No 60
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=99.50 E-value=2e-14 Score=144.01 Aligned_cols=49 Identities=35% Similarity=0.676 Sum_probs=41.5
Q ss_pred EEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccc
Q 001328 5 QVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQN 55 (1099)
Q Consensus 5 ~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~ 55 (1099)
+|+|.||++|.+.++ +|+||+|+|+||||+|||||++||.||||+.+..
T Consensus 1 ~i~i~nf~~~~~~~i--~f~~g~~vi~G~Ng~GKStil~ai~~~L~~~~~~ 49 (202)
T PF13476_consen 1 KIHIKNFRSFKDLEI--DFSPGLNVIYGPNGSGKSTILEAIRYALGGQSSR 49 (202)
T ss_dssp EEEEEEETTEEEEEE--E--SEEEEEEESTTSSHHHHHHHHHHHHHSS-TT
T ss_pred CEEEEEeCCCcceEE--EcCCCcEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 689999999988764 4999999999999999999999999999994443
No 61
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.46 E-value=9.4e-14 Score=137.77 Aligned_cols=81 Identities=22% Similarity=0.370 Sum_probs=63.6
Q ss_pred CeeeEEEEecccccccccccccCCCC----cEEEEcCCCCChhHHHHHHHHHhcc-cccccchhhhhhhhccCCCCcceE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQ----VNCVVGANGSGKTNFFHAIRFVLSD-IFQNLRSEDRHALLHEGAGHQVLS 75 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~----~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~~~~~~~~i~~g~~~~~~~ 75 (1099)
|++.+|+|.||++|.+.+.+ .|+++ +++|+||||||||||++||.|+|++ .....+.....+.+..+. ..
T Consensus 1 m~~~~i~l~nf~~y~~~~~i-~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~----~~ 75 (213)
T cd03279 1 MKPLKLELKNFGPFREEQVI-DFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGE----DT 75 (213)
T ss_pred CEEEEEEEECCcCcCCceEE-eCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCC----cc
Confidence 99999999999999998888 58765 9999999999999999999999977 333333222334454443 37
Q ss_pred EEEEEEEeCCC
Q 001328 76 AFVEIVFDNSD 86 (1099)
Q Consensus 76 a~v~~~f~~~~ 86 (1099)
+.|.++|.+.+
T Consensus 76 ~~v~~~f~~~~ 86 (213)
T cd03279 76 AEVSFTFQLGG 86 (213)
T ss_pred EEEEEEEEECC
Confidence 88999998764
No 62
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.46 E-value=1.8e-13 Score=133.76 Aligned_cols=89 Identities=26% Similarity=0.526 Sum_probs=68.3
Q ss_pred eeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc-cccccc-hhhhhhhhccCCCCcceEEEEEE
Q 001328 3 IKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLR-SEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 3 i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~-~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|++|+|.||++|.+.+.+ +|++|+++|+||||||||||++||.|+++| .+.... .....++++.+.. .+.|.+
T Consensus 1 ~~~l~l~nfr~~~~~~~l-~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~----~~~v~~ 75 (204)
T cd03240 1 IDKLSIRNIRSFHERSEI-EFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEV----RAQVKL 75 (204)
T ss_pred CcEEEEECcccccCceEE-ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCC----cEEEEE
Confidence 579999999998888888 699999999999999999999999999977 332221 1123355655543 689999
Q ss_pred EEeCCCCCCCCCCccEEEEEEe
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTI 102 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~ 102 (1099)
+|++.+ +..+.+.|.+
T Consensus 76 ~f~~~~------~~~~~v~r~~ 91 (204)
T cd03240 76 AFENAN------GKKYTITRSL 91 (204)
T ss_pred EEEeCC------CCEEEEEEEh
Confidence 998752 3456777765
No 63
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=99.44 E-value=8e-13 Score=118.04 Aligned_cols=113 Identities=34% Similarity=0.614 Sum_probs=101.5
Q ss_pred CccccccccccccchhhHHHHHHhhccCcceEEecCchHHHHHHHHHhhcCCCeeEEEeCCCCCCCCCCCCC-----ccc
Q 001328 522 DGVYGPIIELLDCDEKFFTAVEVTAGNSLFHVVVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKAPRVTYPK-----SND 596 (1099)
Q Consensus 522 ~~~~~~l~~~i~~~~~~~~aie~~l~~~l~~~vv~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~ 596 (1099)
+|++|++++++.++++|..|++.++|+.++++||++..++..++++++..+.|+++|+|++.+..+...... ..+
T Consensus 2 ~gv~G~l~dli~v~~~~~~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~~~~~~~~~~ 81 (120)
T PF06470_consen 2 PGVLGRLADLIEVDPKYEKAVEAALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASSADQIRPPGG 81 (120)
T ss_dssp TTEEEEGGGSEEESGGGHHHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCCCGGHHSTTS
T ss_pred CCeeeeHHhceecCHHHHHHHHHHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccchhhccCCcc
Confidence 579999999999999999999999999999999999999999999999999999999999998765544322 346
Q ss_pred cccccccccc-CcchHHHHHHhccCeEEecChHHHHHHH
Q 001328 597 VIPLLDRLEF-SPNFKPAFAQVFARTVICRDLDVCTRVA 634 (1099)
Q Consensus 597 ~~~~~~~i~~-~~~~~~~~~~~l~~~~~~~~~~~a~~~~ 634 (1099)
+.++.++|.+ ++.+.+++.++||++++|++++.|.+++
T Consensus 82 ~~~l~d~i~~~d~~~~~~~~~llg~~~vv~~l~~A~~la 120 (120)
T PF06470_consen 82 AGPLIDLIEFPDEEYRPALEFLLGDVVVVDDLEEARKLA 120 (120)
T ss_dssp EEEGGGGEEESCGGGHHHHHHHHTTEEEESSHHHHHHHH
T ss_pred hHHHHHhcccCcHHHHHHHHHHcCCEEEECCHHHHHHhC
Confidence 7778899999 8899999999999999999999998764
No 64
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.44 E-value=2.5e-13 Score=133.35 Aligned_cols=85 Identities=33% Similarity=0.583 Sum_probs=68.6
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCC-cceEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGH-QVLSAFVE 79 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~-~~~~a~v~ 79 (1099)
|+|++|+|.||++|.+..+++++++++++|+|||||||||++++|.|++|......+.....+++..+... ....++|.
T Consensus 1 ~~~~~l~l~nfk~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 80 (212)
T cd03274 1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSVE 80 (212)
T ss_pred CeEEEEEEECcccCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCceEEEE
Confidence 89999999999999998887567789999999999999999999999998755555555566777665542 34567888
Q ss_pred EEEeCC
Q 001328 80 IVFDNS 85 (1099)
Q Consensus 80 ~~f~~~ 85 (1099)
..|.+.
T Consensus 81 ~~~~~~ 86 (212)
T cd03274 81 VHFQEI 86 (212)
T ss_pred EEEEeC
Confidence 888653
No 65
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.39 E-value=6.7e-13 Score=128.75 Aligned_cols=85 Identities=39% Similarity=0.696 Sum_probs=67.7
Q ss_pred eeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc-cccccchhhhhhhhccCCCC--cceEEEEE
Q 001328 3 IKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLRSEDRHALLHEGAGH--QVLSAFVE 79 (1099)
Q Consensus 3 i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~~~~~~~~i~~g~~~--~~~~a~v~ 79 (1099)
|++|.|.||++|+....+ +|++|+++|+|||||||||+++||.|+++. .....++....++++.|... +...+.|.
T Consensus 1 ~~~~~~~~fr~~~~~~~l-~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (197)
T cd03278 1 LKKLELKGFKSFADKTTI-PFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVT 79 (197)
T ss_pred CcEEEEeCCcCcCCCeee-ecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEE
Confidence 578999999999665555 488899999999999999999999999976 34445666666888877652 23468899
Q ss_pred EEEeCCCCC
Q 001328 80 IVFDNSDNR 88 (1099)
Q Consensus 80 ~~f~~~~~~ 88 (1099)
++|++.+..
T Consensus 80 ~vfq~~~~~ 88 (197)
T cd03278 80 LTFDNSDGR 88 (197)
T ss_pred EEEEcCCCc
Confidence 999987543
No 66
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.38 E-value=6.2e-06 Score=100.53 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 670 MNIIMRNTKTINAREEEVEKLISQLDQKITEHVTEQQKTDAKRAHDKSELEQLKQDIANANKQKQIIS 737 (1099)
Q Consensus 670 ~~~l~~l~~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 737 (1099)
...+..++..+.....+-......+..++..++.++..++.++..+.....-....+..+...+...+
T Consensus 635 e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K 702 (1822)
T KOG4674|consen 635 EKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTK 702 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444454444433333222111134444444444444444444433333333333333333333333
No 67
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.38 E-value=3.1e-06 Score=97.02 Aligned_cols=27 Identities=4% Similarity=0.084 Sum_probs=10.6
Q ss_pred HHhHHHHHHHHHHHHHHHHhhHHHHHH
Q 001328 977 YVNFTEQREELQRRQAELDAGDEKIKE 1003 (1099)
Q Consensus 977 ~~~~~~~~~~l~~q~~dl~~~~~~l~~ 1003 (1099)
.+.+..-+..+.....+.+..++.|..
T Consensus 571 VERLl~~L~~~E~EK~~ke~ki~~Lek 597 (775)
T PF10174_consen 571 VERLLDILREAENEKNDKEKKIGELEK 597 (775)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333333344444444444443333
No 68
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.22 E-value=2.1e-05 Score=90.33 Aligned_cols=30 Identities=17% Similarity=0.059 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 900 RKLQDDARELEQLLSRRNILLAKQEEYSKK 929 (1099)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1099)
.+++.+...+..+...+...+.++..+...
T Consensus 569 ~EVERLl~~L~~~E~EK~~ke~ki~~Leke 598 (775)
T PF10174_consen 569 AEVERLLDILREAENEKNDKEKKIGELEKE 598 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333333333333333444444444433
No 69
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.22 E-value=1.6e-12 Score=153.87 Aligned_cols=74 Identities=14% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001328 860 VEDARQELKRVSDSIVQLTKELNKIKDEKTKLKTLEDNYERKLQDDARELEQLLSRRNILLAKQEEYSKKIREL 933 (1099)
Q Consensus 860 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 933 (1099)
+..+...+..+...+++.......+...+..++..+..+...+..+...+..+...+..++..+..+...+..+
T Consensus 576 ~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l 649 (859)
T PF01576_consen 576 LKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNEL 649 (859)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444555554444444444455555555555554444
No 70
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.21 E-value=2.2e-12 Score=152.66 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhccCccCcHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001328 950 KELLKMLHRCNEQLQQFSHVNKKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDQR 1011 (1099)
Q Consensus 950 ~~l~~~l~~l~~~l~~l~~vn~~a~ee~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~ 1011 (1099)
..+..++..+++++.. |.++......+|..+...+++.......+...+..+...
T Consensus 802 ~kl~~k~k~~krq~ee-------aEe~~~~~~~k~Rk~q~elee~~e~~~~~e~~l~~lr~~ 856 (859)
T PF01576_consen 802 DKLQLKLKQLKRQLEE-------AEEEASRNLAKYRKLQRELEEAEERAEAAERELNKLRAK 856 (859)
T ss_dssp ------------------------------------SSSSHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555544 556666667778888888888888888888777777654
No 71
>PRK03918 chromosome segregation protein; Provisional
Probab=99.21 E-value=6e-05 Score=93.91 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCceEEEEE
Q 001328 1013 DESIERTFKGVARHFREVFSELVQGGHGHLVM 1044 (1099)
Q Consensus 1013 ~~~~~~~f~~in~~f~~~f~~lf~gG~a~L~l 1044 (1099)
......++..|+..|+.+|..+++|+...+.+
T Consensus 735 ~~l~~~~~~~l~~~~~~if~~l~~~~~~~~~l 766 (880)
T PRK03918 735 ALLKERALSKVGEIASEIFEELTEGKYSGVRV 766 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeeEEEE
Confidence 34555667888888999999998887766665
No 72
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.05 E-value=1.7e-05 Score=85.67 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=16.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 455 FNNHKTQRDKMQDERKSLWVKESELCAEIDKLKAEVE 491 (1099)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 491 (1099)
+.+++..+..++.+..++..+.+.+...+..|...+.
T Consensus 419 l~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~ 455 (546)
T PF07888_consen 419 LQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLD 455 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443
No 73
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=99.02 E-value=2.8e-10 Score=111.26 Aligned_cols=49 Identities=33% Similarity=0.603 Sum_probs=45.5
Q ss_pred CeeeEEEEecccccccccccccCCCC-cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQ-VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~-~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|+|.+|.+.||++|....+. |+++ .|+|||||||||||++|||+-||..
T Consensus 1 mrLrkiSl~nfr~f~~ldit--f~e~~ttIivgpNGsGKTtvLdair~aL~~ 50 (440)
T COG3950 1 MRLRKISLNNFRCFLNLDIT--FGESETTIIVGPNGSGKTTVLDAIRNALNK 50 (440)
T ss_pred Cccchhhhhhhhhhhhceee--cCCCceEEEECCCCCChhhHHHHHHHHHHh
Confidence 89999999999999887655 9988 9999999999999999999999966
No 74
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.98 E-value=5.2e-10 Score=105.33 Aligned_cols=51 Identities=27% Similarity=0.461 Sum_probs=43.1
Q ss_pred EEEecccccccccccccCC-CCcEEEEcCCCCChhHHHHHHHHHhcc-cccccc
Q 001328 6 VIIEGFKSYREQIATEPFS-PQVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLR 57 (1099)
Q Consensus 6 l~l~~f~sf~~~~~~~~f~-~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~ 57 (1099)
|.+.||++|..++.+ +|. +++++|+|||||||||++++|.|+++. ..+..|
T Consensus 2 i~~~~~~~~~~~~~i-~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~ 54 (162)
T cd03227 2 IVLGRFPSYFVPNDV-TFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR 54 (162)
T ss_pred ceeCCCCEEEeccEE-ecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc
Confidence 678899999999888 455 459999999999999999999999998 334334
No 75
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.93 E-value=0.00015 Score=78.42 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001328 980 FTEQREELQRRQAELDAGDEKIKELISVLDQRKDE 1014 (1099)
Q Consensus 980 ~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~ 1014 (1099)
+..-+.-+...++.+.....+|..+|..|..+...
T Consensus 422 lks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~ 456 (546)
T PF07888_consen 422 LKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDK 456 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555565666555554443
No 76
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.93 E-value=0.00028 Score=80.21 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=43.5
Q ss_pred hHhhcCCHHHHHHHHHHhcChHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 145 ASLTLMKDSERLDLLKEIGGTRVYEER--------RRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRK 212 (1099)
Q Consensus 145 ~~~~~~~~~~~~~~lee~~g~~~~~~~--------~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 212 (1099)
+.+...=|.++..=|-.+..+....+. .-.....|.+++.+..++.+.+..-...+..|+...+.+++
T Consensus 141 ~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~k 216 (1072)
T KOG0979|consen 141 DNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEK 216 (1072)
T ss_pred CchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334456688888888777777766543 33444556666667777777766666666666666555544
No 77
>PRK01156 chromosome segregation protein; Provisional
Probab=98.90 E-value=0.00081 Score=83.51 Aligned_cols=17 Identities=6% Similarity=0.200 Sum_probs=8.1
Q ss_pred cEEEEEEeecCCCeEEe
Q 001328 95 EVRLRRTIGLKKDEYFL 111 (1099)
Q Consensus 95 ~~~i~R~~~~~~~~~~i 111 (1099)
...|.-.|..++..|.|
T Consensus 66 ~~~V~l~f~~~g~~y~i 82 (895)
T PRK01156 66 NLEVELEFRIGGHVYQI 82 (895)
T ss_pred eEEEEEEEEECCEEEEE
Confidence 33444444444455655
No 78
>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain.
Probab=98.90 E-value=2.2e-09 Score=111.90 Aligned_cols=81 Identities=17% Similarity=0.264 Sum_probs=60.4
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCC--CcceEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAG--HQVLSAFV 78 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~--~~~~~a~v 78 (1099)
|+|.+|.|.||+++....+. |++ .|+++|+|++||||+++|+.++||.... .+.-...||-+.... .+...-.|
T Consensus 1 M~l~~i~i~~FRgi~~~~~~--l~~-~t~liG~N~~GKss~l~Al~~~l~~~~~-~~~f~~~DFh~~~~~~~~~~~~i~i 76 (373)
T PF11398_consen 1 MKLERIEISNFRGIKRLSLP--LDD-NTVLIGENNWGKSSLLDALSLLLSPSRR-LYQFTESDFHVPPGEEHDQERHIQI 76 (373)
T ss_pred CeEEEEEEeccCccceEEEE--ecC-ceEEEcCCCccHhHHHHHHHHHhCCCcc-ccccCHHHhCCCcccccccCceEEE
Confidence 99999999999999887654 885 8999999999999999999999998532 333355576543222 23345667
Q ss_pred EEEEeCC
Q 001328 79 EIVFDNS 85 (1099)
Q Consensus 79 ~~~f~~~ 85 (1099)
.++|...
T Consensus 77 ~~~F~e~ 83 (373)
T PF11398_consen 77 VLTFCES 83 (373)
T ss_pred EEEecCC
Confidence 7777533
No 79
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.83 E-value=1.3e-05 Score=80.28 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=15.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 784 LSRLNPEITELKEKLITCRTDRIEYETRKAELETN 818 (1099)
Q Consensus 784 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 818 (1099)
+..++..+..+..........+.....++..+...
T Consensus 94 i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~ 128 (237)
T PF00261_consen 94 IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQE 128 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444333
No 80
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.81 E-value=1.2e-05 Score=80.38 Aligned_cols=83 Identities=19% Similarity=0.242 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 414 QKLQEEIQRLKGDLKERDEYIESRKREIAYLESSISQSREGFNNHKTQRDKMQDERKSLWVKESELCAEIDKLKAEVEKA 493 (1099)
Q Consensus 414 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 493 (1099)
..+..++..+...+..++............+...+..+...+.........+...+..+...+..+...+...+..+..+
T Consensus 144 ~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~ 223 (237)
T PF00261_consen 144 KELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKV 223 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333344444444444444444444455555555555555555555444444444
Q ss_pred HHh
Q 001328 494 EKS 496 (1099)
Q Consensus 494 ~~~ 496 (1099)
...
T Consensus 224 ~~e 226 (237)
T PF00261_consen 224 QEE 226 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 81
>PF13166 AAA_13: AAA domain
Probab=98.81 E-value=8.9e-05 Score=89.74 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=31.3
Q ss_pred ccccccc-ccccccCCCCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 10 GFKSYRE-QIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 10 ~f~sf~~-~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
||++|.+ ...+ ++.+++|+|+|.|||||||+...++-+-+
T Consensus 1 n~~~~~~~~~~~-~~~~~~n~IYG~NGsGKStlsr~l~~~~~ 41 (712)
T PF13166_consen 1 NYASFDNWDNEL-DEFKKINLIYGRNGSGKSTLSRILKSLCR 41 (712)
T ss_pred CeeeecCCCccC-CCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 7889952 3344 45668999999999999999999976543
No 82
>COG5293 Predicted ATPase [General function prediction only]
Probab=98.71 E-value=0.00021 Score=73.12 Aligned_cols=30 Identities=37% Similarity=0.696 Sum_probs=28.2
Q ss_pred cCCCCcEEEEc-----------CCCCChhHHHHHHHHHhcc
Q 001328 22 PFSPQVNCVVG-----------ANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 22 ~f~~~~~~I~G-----------~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.|.||+|+|.| .||-||||++..|.||||+
T Consensus 22 kFnpGlNIVlae~red~~~~~~tnglGKSTlie~i~Fclg~ 62 (591)
T COG5293 22 KFNPGLNIVLAEIREDENRKKDTNGLGKSTLIELIDFCLGS 62 (591)
T ss_pred eeCCCceEEeeeccCcccccccccCcchhhHHHHHHHHhcc
Confidence 39999999998 5999999999999999999
No 83
>COG1106 Predicted ATPases [General function prediction only]
Probab=98.70 E-value=1.3e-08 Score=105.16 Aligned_cols=48 Identities=40% Similarity=0.642 Sum_probs=43.4
Q ss_pred eeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 2 HIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+|.+++|.||+||.+.... .|. ++++|+|+|||||||+++|+.++.|-
T Consensus 1 MI~~~~IkNFkSf~e~~~~-~~~-~in~I~G~N~sGKSNlleAl~f~~~~ 48 (371)
T COG1106 1 MIKSFKIKNFKSFRELELE-DFG-KINIIYGANGAGKSNLLEALYFLKGL 48 (371)
T ss_pred CceEEEecccccHHHhhhc-ccc-ceEEEEcCCCCchhHHHHHHHHHHHh
Confidence 5899999999999998776 475 59999999999999999999998876
No 84
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=98.63 E-value=4.4e-08 Score=107.10 Aligned_cols=82 Identities=24% Similarity=0.415 Sum_probs=61.9
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCC--CcceEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAG--HQVLSAFV 78 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~--~~~~~a~v 78 (1099)
|+|.+|+|.||++|...++. |..|+|+|+|+|-+|||+|+||++.+|... ..+......|+++.-+. .+...-.+
T Consensus 1 M~L~~v~I~nFR~i~~lsl~--~~~g~~vlIGeN~~GKsslLdAL~l~l~~~-~~~~~f~~~d~~~~~~e~~~~~q~l~i 77 (581)
T COG3593 1 MHLERVKIKNFRGINRLSLE--FEEGLNVLIGENNSGKSSLLDALRLLLDPE-SDLYSFTLDDFHFPISEFDEKSQHLHI 77 (581)
T ss_pred CcceeEEecccceeeeeeee--ecCCceEEEcCCCcchHHHHHHHHHHcCCc-ccccceeeccCccChhhcCCcCceEEE
Confidence 99999999999999888876 999999999999999999999999999873 33333344566555332 12223556
Q ss_pred EEEEeCC
Q 001328 79 EIVFDNS 85 (1099)
Q Consensus 79 ~~~f~~~ 85 (1099)
+++|..+
T Consensus 78 ~~~~~e~ 84 (581)
T COG3593 78 ELTFAES 84 (581)
T ss_pred EEEeccc
Confidence 6666544
No 85
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.51 E-value=0.012 Score=75.05 Aligned_cols=124 Identities=15% Similarity=0.199 Sum_probs=69.9
Q ss_pred cEEecCCCcccCCcceecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001328 640 DCITLEGDQVSKKGGMTGGFYDYRRSKLKFMNIIMRNTKTINAREEEVEKLISQLDQKITEHVTEQQKTDAKRAHDKSEL 719 (1099)
Q Consensus 640 ~~vt~~g~~~~~~g~~~g~~~~~~~~~~~~~~~l~~l~~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~ 719 (1099)
..|..+|.. ..|.+.|........++.....-..-...+.++...+.. +..++..+..++..+..++..+....
T Consensus 706 ~~v~~dG~~--r~G~l~G~~~k~~a~~IG~~aR~~~R~~ri~el~~~Iae----L~~~i~~l~~~l~~l~~r~~~L~~e~ 779 (1353)
T TIGR02680 706 TWIDVDGRF--RLGVLRGAWAKPAAEYIGAAARERARLRRIAELDARLAA----VDDELAELARELRALGARQRALADEL 779 (1353)
T ss_pred eeECCCCce--eeeeeecccCCcchhHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777763 456677666555666776666555566667777777766 66666666666666666666665555
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001328 720 EQLK--QDIANANKQKQIISKALENKEKSLADVRTQLDQLEASMAMKQAEMN 769 (1099)
Q Consensus 720 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~ 769 (1099)
..+- ..+......+......+......+......+......+......+.
T Consensus 780 ~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~ 831 (1353)
T TIGR02680 780 AGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELE 831 (1353)
T ss_pred HhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5442 2333333334444444444444444444444444444444444433
No 86
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.51 E-value=0.0054 Score=70.55 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001328 229 DKELHDARQKLLEVDDTR 246 (1099)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~ 246 (1099)
...+..+++.+..++..+
T Consensus 1200 ~s~f~~me~kl~~ir~il 1217 (1758)
T KOG0994|consen 1200 ASRFLDMEEKLEEIRAIL 1217 (1758)
T ss_pred HhHHHHHHHHHHHHHHHh
Confidence 445555666665555544
No 87
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.48 E-value=0.0037 Score=68.16 Aligned_cols=166 Identities=17% Similarity=0.264 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 001328 173 RESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQ---------LDKQRKSLEYT--IYDKELHDARQKLLE 241 (1099)
Q Consensus 173 ~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~---------l~~~~~~~~~~--~~~~~~~~~~~~l~~ 241 (1099)
..-.+.|..+.+++..+-+.+..|+.+-..|......++.-.. ...++..+... ........+..++..
T Consensus 38 ~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~k 117 (546)
T KOG0977|consen 38 EREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITK 117 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666666666666666666666666655555443110 01111111100 011122333333444
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHhcchh
Q 001328 242 VDDTRTRFSDESAKMYNSLLDAQEKSKDSDKRFKDLMKEVQTLNKEKEAIEKRLTEAIKNQTAFELDVKDIQERISGNSQ 321 (1099)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1099)
+..++..+...+.............+......+..++.++..+...+..++.+...+..+..++...+..+...+....-
T Consensus 118 l~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etl 197 (546)
T KOG0977|consen 118 LREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETL 197 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 44444444433333333333333333333444444444444444444455555555555555555555555544444333
Q ss_pred hHHHHHHHHHHHHHHHH
Q 001328 322 ARDDAKKQLRSLLEEID 338 (1099)
Q Consensus 322 ~~~~~~~~~~~l~~~~~ 338 (1099)
....+...+..|..++.
T Consensus 198 lr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 198 LRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 33344444444444443
No 88
>PF04310 MukB: MukB N-terminal; InterPro: IPR007406 This is the N-terminal region of MukB. MukB is involved in the segregation and condensation of prokaryotic chromosomes. MukE (IPR007385 from INTERPRO) along with MukF (IPR005582 from INTERPRO) interact with MukB in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side []. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif. In other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0007059 chromosome segregation, 0030261 chromosome condensation, 0009295 nucleoid; PDB: 1QHL_A 3EUK_H 3EUJ_A.
Probab=98.47 E-value=1.5e-07 Score=85.11 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=43.5
Q ss_pred eeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 2 HIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
++.+|.|.||..|...++. |+.-+|.+.|.||+||||+|.|+..+|=+
T Consensus 6 k~~SLtlVNwNG~fartfd--Ld~lvTtL~G~NGAGKsT~m~Af~taLIP 53 (227)
T PF04310_consen 6 KFRSLTLVNWNGFFARTFD--LDELVTTLSGGNGAGKSTTMAAFITALIP 53 (227)
T ss_dssp EEEEEEEECETTECEEEEE--HHCCCCCCCCSTTCCHHHHHHHHHHHHS-
T ss_pred ccceEEEEeecCeeeeEee--hhhheEeeecCCCCcchhhHHHHHHHhcc
Confidence 5789999999999998876 88889999999999999999999998843
No 89
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.47 E-value=7.2e-08 Score=93.92 Aligned_cols=46 Identities=33% Similarity=0.717 Sum_probs=40.3
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|+|.+|.++||++|+..... . +++|+|+|.||+||||+++|++++=
T Consensus 1 ~~l~si~vknyRs~r~l~le--i-~~~nviIGANGaGKSn~~~~l~~l~ 46 (373)
T COG4637 1 MMLVSIKVKNYRSFRSLDLE--I-RRVNVIIGANGAGKSNFYDALRLLA 46 (373)
T ss_pred CccchhhhhcchhHHhcccc--c-cceEEEEcCCCCchhHHHHHHHHHH
Confidence 89999999999999876542 4 4799999999999999999998754
No 90
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.46 E-value=0.0039 Score=66.55 Aligned_cols=54 Identities=24% Similarity=0.402 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 228 YDKELHDARQKLLEVDDTRTRFSDESAKMYNSLLDAQEKSKDSDKRFKDLMKEV 281 (1099)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 281 (1099)
+..++..+...+..+......+...+..+...+..+...+.........+...+
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el 105 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEEL 105 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444444444444444444444444433333333333333
No 91
>PF13175 AAA_15: AAA ATPase domain
Probab=98.41 E-value=2e-07 Score=105.36 Aligned_cols=48 Identities=29% Similarity=0.590 Sum_probs=42.4
Q ss_pred eeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 3 IKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 3 i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|++|.|.||++|.+...+ .|++++|+|||.|||||||||+||..++.+
T Consensus 1 ik~i~IkNfR~i~~~~~i-~~~~~itiiiG~N~sGKT~IL~aL~~~~~~ 48 (415)
T PF13175_consen 1 IKKIRIKNFRSIKDSGEI-NFDEDITIIIGENNSGKTNILEALDLFFNG 48 (415)
T ss_pred CcEEEEecccccCcccee-ecCCceEEEEccCCCCHHHHHHHHHHhcCc
Confidence 689999999999998445 499999999999999999999999666654
No 92
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.40 E-value=0.0099 Score=68.69 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 001328 173 RESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELR-KYQQLDKQRKSLEYTIYD------KELHDARQKLLEVDDT 245 (1099)
Q Consensus 173 ~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~ 245 (1099)
..+...+..+...+..++..+..+...+..|....+.-+ .+..+...+..+...+.. ..+..+...+..+...
T Consensus 101 ~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~ 180 (569)
T PRK04778 101 RKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEE 180 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH
Confidence 344555556666666666666666666665554433322 244444444444433332 2344555555555555
Q ss_pred Hhhhh
Q 001328 246 RTRFS 250 (1099)
Q Consensus 246 ~~~~~ 250 (1099)
...+.
T Consensus 181 f~~f~ 185 (569)
T PRK04778 181 FSQFV 185 (569)
T ss_pred HHHHH
Confidence 55443
No 93
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.28 E-value=0.0098 Score=63.52 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 876 QLTKELNKIKDEKTKLKTLEDNYERKLQDDARELEQLLSRRNILLAKQEEY 926 (1099)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1099)
++..........+..+..++..+...+..+..++..+......++..+..+
T Consensus 199 ~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 199 ELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 333333333333344444444444444444444444444444444444333
No 94
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.23 E-value=0.023 Score=65.65 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001328 984 REELQRRQAELDAGDEKIKELISVLDQR 1011 (1099)
Q Consensus 984 ~~~l~~q~~dl~~~~~~l~~~i~~l~~~ 1011 (1099)
+++|+..+.+-+.++......+..|+.+
T Consensus 1712 l~dLe~~y~~~~~~L~~~~aeL~~Le~r 1739 (1758)
T KOG0994|consen 1712 LKDLELEYLRNEQALEDKAAELAGLEKR 1739 (1758)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhHHHH
Confidence 3333333333333444444444444433
No 95
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.21 E-value=1e-06 Score=79.74 Aligned_cols=45 Identities=24% Similarity=0.516 Sum_probs=32.4
Q ss_pred EEec-cccccccccccc----CC-CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 7 IIEG-FKSYREQIATEP----FS-PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 7 ~l~~-f~sf~~~~~~~~----f~-~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
++.| -|+|....++++ |+ .|+|+|+||||+||||++..+.-.+..
T Consensus 3 ~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~ 53 (252)
T COG4604 3 TIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK 53 (252)
T ss_pred eehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc
Confidence 4444 355655544422 33 589999999999999999999877744
No 96
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.20 E-value=2.3e-06 Score=84.14 Aligned_cols=27 Identities=26% Similarity=0.559 Sum_probs=24.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+++|+|||||||||++.+|.-.|-.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 469999999999999999999887754
No 97
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.11 E-value=0.027 Score=61.73 Aligned_cols=25 Identities=8% Similarity=0.194 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHHHhccCccCcHH
Q 001328 948 GVKELLKMLHRCNEQLQQFSHVNKK 972 (1099)
Q Consensus 948 ~~~~l~~~l~~l~~~l~~l~~vn~~ 972 (1099)
++..+...+..+..+|..+...|..
T Consensus 297 El~~~R~~i~~Lr~klselE~~n~~ 321 (546)
T KOG0977|consen 297 ELRRIRSRISGLRAKLSELESRNSA 321 (546)
T ss_pred HHHHHHhcccchhhhhccccccChh
Confidence 3444445555555555555444444
No 98
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.032 Score=61.78 Aligned_cols=13 Identities=8% Similarity=0.353 Sum_probs=6.2
Q ss_pred EEEcCCCCChhHH
Q 001328 29 CVVGANGSGKTNF 41 (1099)
Q Consensus 29 ~I~G~NGsGKS~i 41 (1099)
++..-|--||=+|
T Consensus 56 ALsDldkDGrmdi 68 (1118)
T KOG1029|consen 56 ALSDLDKDGRMDI 68 (1118)
T ss_pred HhhhcCccccchH
Confidence 3444555555443
No 99
>PRK11637 AmiB activator; Provisional
Probab=98.09 E-value=0.0085 Score=66.84 Aligned_cols=78 Identities=15% Similarity=0.229 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 670 MNIIMRNTKTINAREEEVEKLISQLDQKITEHVTEQQKTDAKRAHDKSELEQLKQDIANANKQKQIISKALENKEKSLAD 749 (1099)
Q Consensus 670 ~~~l~~l~~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (1099)
..++..++.++..+..++.. +..++..+..++..+..++..+...+.....++..+..++..++.++..++..+..
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~----~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQ----QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444444 34444444444444444444444444444444444444444444444444433333
Q ss_pred HH
Q 001328 750 VR 751 (1099)
Q Consensus 750 l~ 751 (1099)
..
T Consensus 122 ~~ 123 (428)
T PRK11637 122 QE 123 (428)
T ss_pred HH
Confidence 33
No 100
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.05 E-value=3.1e-06 Score=76.02 Aligned_cols=30 Identities=30% Similarity=0.518 Sum_probs=27.3
Q ss_pred cCCCCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 22 PFSPQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 22 ~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.|.+.+|+|+|.||||||||++||.-.+|-
T Consensus 34 eF~apIT~i~GENGsGKSTLLEaiA~~~~~ 63 (233)
T COG3910 34 EFRAPITFITGENGSGKSTLLEAIAAGMGF 63 (233)
T ss_pred cccCceEEEEcCCCccHHHHHHHHHhhccc
Confidence 388899999999999999999999887765
No 101
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.04 E-value=1.5e-06 Score=78.57 Aligned_cols=37 Identities=30% Similarity=0.657 Sum_probs=26.7
Q ss_pred EecccccccccccccCCC-CcEEEEcCCCCChhHHHHHHH
Q 001328 8 IEGFKSYREQIATEPFSP-QVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 8 l~~f~sf~~~~~~~~f~~-~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
+-||+...+.++. .+| .+.+|+||||+||||+||+|.
T Consensus 15 F~GF~Aln~ls~~--v~~Gelr~lIGpNGAGKTT~mD~It 52 (249)
T COG4674 15 FGGFKALNDLSFS--VDPGELRVLIGPNGAGKTTLMDVIT 52 (249)
T ss_pred EcceeeeeeeEEE--ecCCeEEEEECCCCCCceeeeeeec
Confidence 3345544444443 334 589999999999999999986
No 102
>PRK11637 AmiB activator; Provisional
Probab=98.01 E-value=0.011 Score=65.89 Aligned_cols=80 Identities=10% Similarity=0.236 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 675 RNTKTINAREEEVEKLISQLDQKITEHVTEQQKTDAKRAHDKSELEQLKQDIANANKQKQIISKALENKEKSLADVRTQL 754 (1099)
Q Consensus 675 ~l~~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 754 (1099)
.++.++..+..++.. +...+..+...+..+..++..+..++..+...+..+..++..++.++..++.++..++.++
T Consensus 44 ~~~~~l~~l~~qi~~----~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 44 DNRDQLKSIQQDIAA----KEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444 4444555555555555555444444444444444444444444444444444444444444
Q ss_pred HHHH
Q 001328 755 DQLE 758 (1099)
Q Consensus 755 ~~l~ 758 (1099)
....
T Consensus 120 ~~~~ 123 (428)
T PRK11637 120 AAQE 123 (428)
T ss_pred HHHH
Confidence 4433
No 103
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.96 E-value=0.018 Score=66.87 Aligned_cols=37 Identities=27% Similarity=0.217 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001328 897 NYERKLQDDARELEQLLSRRNILLAKQEEYSKKIREL 933 (1099)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 933 (1099)
+|-..+.+.+.+++.+...+..-+.++.++..+|.++
T Consensus 619 dLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 619 DLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566655555555666667777777664
No 104
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.94 E-value=5.8e-05 Score=89.97 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-------CceEEEEE
Q 001328 1014 ESIERTFKGVARHFREVFSELVQ-------GGHGHLVM 1044 (1099)
Q Consensus 1014 ~~~~~~f~~in~~f~~~f~~lf~-------gG~a~L~l 1044 (1099)
.++.+.|..=...|.++-..||| +|...|.-
T Consensus 623 ~RLkevf~~ks~eFr~av~~llGyki~~~~~~~~rl~S 660 (722)
T PF05557_consen 623 QRLKEVFKAKSQEFREAVYSLLGYKIDFMPNGRVRLTS 660 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSEEEEEETTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcceeeecCCCeEEEEe
Confidence 45666666666778888777765 67777665
No 105
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.94 E-value=0.012 Score=68.22 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 465 MQDERKSLWVKESELCAEIDKLKAEVEKAEK 495 (1099)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 495 (1099)
|-..+.+.++++......+..-..++..+..
T Consensus 620 LfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ 650 (697)
T PF09726_consen 620 LFSALGDAKRQLEIAQGQLRKKDKEIEELKA 650 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433
No 106
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.94 E-value=7.7e-06 Score=80.72 Aligned_cols=124 Identities=27% Similarity=0.396 Sum_probs=71.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCC------CcceEEEEEEEEeCCCCCC--CCCC
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAG------HQVLSAFVEIVFDNSDNRI--PVDK 93 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~------~~~~~a~v~~~f~~~~~~~--~~~~ 93 (1099)
+.+| .++|+|||||||||++..+.-++-...+.. ...|.+ .....-.|.++|.|.+..+ +.-.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v--------~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~ 98 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV--------LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVE 98 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE--------EECCeeccchhhHHHhhcceEEEEECcccccccCcHH
Confidence 4455 999999999999999988876665433221 222221 1122457999999998765 1111
Q ss_pred ccEEEEEEeecCCCeEEeCCeecCHHH----HHHHHHHcCCC--CCCCceeecCch-----HhHhhcCCHHHHHHHHHHh
Q 001328 94 EEVRLRRTIGLKKDEYFLDGKHITKTE----VMNLLESAGFS--RSNPYYVVQQGK-----IASLTLMKDSERLDLLKEI 162 (1099)
Q Consensus 94 ~~~~i~R~~~~~~~~~~in~~~~~~~~----~~~l~~~~g~~--~~~~~~~i~qg~-----i~~~~~~~~~~~~~~lee~ 162 (1099)
+++. |-.-+..++..+ +.+.+..+|+. ...+.+-++.|+ |..++.+.|+- -+|+|.
T Consensus 99 ~eva-----------fg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i--liLDEP 165 (235)
T COG1122 99 DEVA-----------FGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEI--LLLDEP 165 (235)
T ss_pred HHHh-----------hchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCE--EEEcCC
Confidence 1221 222233333333 55667777876 334455667776 44566677662 245554
Q ss_pred -cChHH
Q 001328 163 -GGTRV 167 (1099)
Q Consensus 163 -~g~~~ 167 (1099)
+|++.
T Consensus 166 ta~LD~ 171 (235)
T COG1122 166 TAGLDP 171 (235)
T ss_pred CCCCCH
Confidence 45544
No 107
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.93 E-value=8.9e-06 Score=75.56 Aligned_cols=44 Identities=23% Similarity=0.408 Sum_probs=31.4
Q ss_pred EEEec-ccccccccccccCC-----CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 6 VIIEG-FKSYREQIATEPFS-----PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 6 l~l~~-f~sf~~~~~~~~f~-----~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|++.| -|+|.+.++...++ ..+++|+||+||||||++.+|.+.=
T Consensus 3 i~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 55666 35666655443222 4588999999999999999998554
No 108
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.93 E-value=8.8e-06 Score=79.64 Aligned_cols=110 Identities=20% Similarity=0.302 Sum_probs=58.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCC-----CcceEEEEEEEEeCCCCCCCCCCccEEEE
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAG-----HQVLSAFVEIVFDNSDNRIPVDKEEVRLR 99 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~-----~~~~~a~v~~~f~~~~~~~~~~~~~~~i~ 99 (1099)
+.+++|+||||||||||+.+|.-++-...+.. ...|.+ +...-+||-=.+ .-+..+|+ +|.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i--------~~~g~~~~~~~~~~~IgYVPQ~~-~~d~~fP~-----tV~ 95 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEI--------KIFGKPVRKRRKRLRIGYVPQKS-SVDRSFPI-----TVK 95 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceE--------EEccccccccccCCeEEEcCccc-ccCCCCCc-----CHH
Confidence 46899999999999999999976664432221 112211 111234443222 12333432 232
Q ss_pred EEeecC---CCeEEeCCeecCHHHHHHHHHHcCCC--CCCCceeecCchHhHhh
Q 001328 100 RTIGLK---KDEYFLDGKHITKTEVMNLLESAGFS--RSNPYYVVQQGKIASLT 148 (1099)
Q Consensus 100 R~~~~~---~~~~~in~~~~~~~~~~~l~~~~g~~--~~~~~~~i~qg~i~~~~ 148 (1099)
+.+..| ...++---..-....+.+.|...|+. .+.+..=++.|+..+++
T Consensus 96 d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~ 149 (254)
T COG1121 96 DVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVL 149 (254)
T ss_pred HHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHH
Confidence 222221 11111111222367788899988887 44556667888866644
No 109
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.93 E-value=0.079 Score=60.94 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 170 ERRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKE 208 (1099)
Q Consensus 170 ~~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 208 (1099)
.++......|.+-.+++.++...++.++.++..|..+..
T Consensus 184 ~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~ 222 (1195)
T KOG4643|consen 184 KKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIE 222 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556666666666666666666655443
No 110
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.92 E-value=7.4e-06 Score=84.31 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=34.6
Q ss_pred EEEEec-ccccccc-cccc---cCC-CCcEEEEcCCCCChhHHHHHHHHHhccccc
Q 001328 5 QVIIEG-FKSYREQ-IATE---PFS-PQVNCVVGANGSGKTNFFHAIRFVLSDIFQ 54 (1099)
Q Consensus 5 ~l~l~~-f~sf~~~-~~~~---~f~-~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~ 54 (1099)
.|+|.| .|+|.+. .+.+ .+. ..+.+|+|||||||||+|+.|.-....+.+
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G 58 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSG 58 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 567777 5566654 2110 133 459999999999999999999866654444
No 111
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.92 E-value=1e-05 Score=74.57 Aligned_cols=28 Identities=36% Similarity=0.664 Sum_probs=23.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.| .+++|+||||+||||++.++.--|.
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCccC
Confidence 555 4889999999999999999875554
No 112
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.91 E-value=0.0057 Score=71.95 Aligned_cols=14 Identities=7% Similarity=0.188 Sum_probs=6.9
Q ss_pred HHHHHHHHHhcChH
Q 001328 153 SERLDLLKEIGGTR 166 (1099)
Q Consensus 153 ~~~~~~lee~~g~~ 166 (1099)
.+...+++++.|+.
T Consensus 113 ~~~~~~i~~~~g~~ 126 (562)
T PHA02562 113 KDFQKYFEQMLGMN 126 (562)
T ss_pred HHHHHHHHHHHCCC
Confidence 34445555555543
No 113
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.90 E-value=0.088 Score=60.64 Aligned_cols=167 Identities=16% Similarity=0.243 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 852 ELADAKSFVEDARQELKRVSDSIVQLTKELNKIKDEKTKLKTLEDNYERKLQDDARELEQLLSRRNILLAKQEEYSKKIR 931 (1099)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 931 (1099)
++..+......+...+..-......+...+..+...+..++.+...+...+..+...-..+......+...+..+.+.+.
T Consensus 352 ~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 352 QLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334444444444444444444444444444444444444444455556666666666665
Q ss_pred h--cCCCChhhhhhhccCCHHHHHHHHHHHHHHhccCccCcHHHHHH-HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001328 932 E--LGPLSSDAFDTYKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQ-YVNFTEQREELQRRQAELDAGDEKIKELISVL 1008 (1099)
Q Consensus 932 ~--~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~vn~~a~ee-~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l 1008 (1099)
. +..+|.+... ........+..+...|+. .|+|+..+.. ...+..-...|.....++.....-.+..|.=
T Consensus 432 k~nLPGlp~~y~~-----~~~~~~~~i~~l~~~L~~-~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQY- 504 (560)
T PF06160_consen 432 KSNLPGLPEDYLD-----YFFDVSDEIEELSDELNQ-VPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQY- 504 (560)
T ss_pred HcCCCCCCHHHHH-----HHHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5 4556666544 345567788888888877 5888875543 3334444555555555555444444444322
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001328 1009 DQRKDESIERTFKGVARHFRE 1029 (1099)
Q Consensus 1009 ~~~~~~~~~~~f~~in~~f~~ 1029 (1099)
-.+|...+..|+..+..
T Consensus 505 ----aNRYR~~~~~v~~al~~ 521 (560)
T PF06160_consen 505 ----ANRYRSDNPEVDEALTE 521 (560)
T ss_pred ----HhcccCCCHHHHHHHHH
Confidence 23444444444444433
No 114
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.90 E-value=1.1e-05 Score=77.59 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhccccc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSDIFQ 54 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~ 54 (1099)
..+.+|+||+||||||++..|.-....+.+
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~p~~G 58 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEKPTSG 58 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 458899999999999999999866655444
No 115
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=9e-06 Score=77.83 Aligned_cols=47 Identities=23% Similarity=0.479 Sum_probs=40.6
Q ss_pred eeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 2 HIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+|.+++|.|||+|....++ +.| +|+++|||.|||||.+.+|...+.+
T Consensus 1 mi~sl~l~nfk~y~n~~i~--l~~-ltVF~G~NssGKSt~iqsl~li~s~ 47 (374)
T COG4938 1 MILSLSLKNFKPYINGKII--LKP-LTVFIGPNSSGKSTTIQSLYLIYSG 47 (374)
T ss_pred CcceeeecCccceecceEE--Eec-ceEEEcCCCCchhHHHHHHHHHHHh
Confidence 3679999999999766655 675 9999999999999999999887754
No 116
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.90 E-value=0.011 Score=57.43 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=12.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 344 LDKANTLYENKCIEEKKITKDIMEREKQLSIL 375 (1099)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 375 (1099)
+..++..++.+..+...++..+..+...+...
T Consensus 47 ~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 47 LEALEIELEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 117
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.89 E-value=0.034 Score=55.33 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHhc
Q 001328 952 LLKMLHRCNEQLQ 964 (1099)
Q Consensus 952 l~~~l~~l~~~l~ 964 (1099)
++..|.++...|.
T Consensus 233 ~~~elre~~k~ik 245 (294)
T COG1340 233 LQNELRELEKKIK 245 (294)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 118
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.84 E-value=2.1e-05 Score=74.94 Aligned_cols=111 Identities=16% Similarity=0.256 Sum_probs=68.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCC-c-----ceEEEEEEEEeCCCCCCCCCCcc
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGH-Q-----VLSAFVEIVFDNSDNRIPVDKEE 95 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~-~-----~~~a~v~~~f~~~~~~~~~~~~~ 95 (1099)
+.+| ..+|+||+||||||+..+|.-..-...+ ++.+.|... + ...+-|.++|.++.+.+. ..
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G--------~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLn---P~ 98 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSG--------SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN---PR 98 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCc--------eEEECCcccCccccchhhccceeEEecCCccccC---cc
Confidence 3344 5679999999999999998755433322 455556432 1 236789999998866551 11
Q ss_pred EEEEEEeecCCCeEEeCCeecCHHHHHHHHHHcCCCC---C-CCceeecCchHhHhh
Q 001328 96 VRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSR---S-NPYYVVQQGKIASLT 148 (1099)
Q Consensus 96 ~~i~R~~~~~~~~~~in~~~~~~~~~~~l~~~~g~~~---~-~~~~~i~qg~i~~~~ 148 (1099)
.+|.+.+.. .+.++|-+-....+.+++...|++. . .|.- ++.|+..+++
T Consensus 99 ~tv~~~l~E---pl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~e-LSGGQ~QRia 151 (252)
T COG1124 99 RTVGRILSE---PLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHE-LSGGQRQRIA 151 (252)
T ss_pred hhHHHHHhh---hhccCCccHHHHHHHHHHHHcCCCHHHHhcCchh-cChhHHHHHH
Confidence 233333322 2444666665666899999999982 1 1222 5677655544
No 119
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.032 Score=62.43 Aligned_cols=15 Identities=13% Similarity=0.527 Sum_probs=8.3
Q ss_pred CCeecCHHHHHHHHH
Q 001328 112 DGKHITKTEVMNLLE 126 (1099)
Q Consensus 112 n~~~~~~~~~~~l~~ 126 (1099)
|..|+.+.++..++.
T Consensus 562 ~s~p~~r~~~~~lIt 576 (970)
T KOG0946|consen 562 NSSPVSRSDVYQLIT 576 (970)
T ss_pred ccCcccHHHHHHHHH
Confidence 344556666665554
No 120
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.73 E-value=0.16 Score=58.44 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHhccCccCcHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001328 948 GVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDQRKDESIERT 1019 (1099)
Q Consensus 948 ~~~~l~~~l~~l~~~l~~l~~vn~~a~ee~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~~~~~ 1019 (1099)
.+..|+.+|..++..-..|... -.-+..|++.+..|++++.......++..+.|+.-.+-.+...
T Consensus 641 tm~kLRnELK~LKEDAATFsSl-------RamFa~RCdEYvtQldemqrqL~aAEdEKKTLNsLLRmAIQQK 705 (717)
T PF09730_consen 641 TMMKLRNELKALKEDAATFSSL-------RAMFAARCDEYVTQLDEMQRQLAAAEDEKKTLNSLLRMAIQQK 705 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555443211 1123556777777777777777777766666666555444443
No 121
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.70 E-value=0.023 Score=55.21 Aligned_cols=50 Identities=14% Similarity=0.339 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 717 SELEQLKQDIANANKQKQIISKALENKEKSLADVRTQLDQLEASMAMKQA 766 (1099)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~ 766 (1099)
..+..++.++..+...+..++..+..+..++..++.++..+..++...+.
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444444444444444444433333
No 122
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.68 E-value=7.1e-06 Score=78.14 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
..+++|+|||||||||+++.|.-++-.
T Consensus 30 Gei~~LIGPNGAGKTTlfNlitG~~~P 56 (250)
T COG0411 30 GEIVGLIGPNGAGKTTLFNLITGFYKP 56 (250)
T ss_pred CeEEEEECCCCCCceeeeeeecccccC
Confidence 359999999999999999998766644
No 123
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.62 E-value=0.17 Score=55.57 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHh
Q 001328 396 QKEIDDLERVHSSN 409 (1099)
Q Consensus 396 ~~~~~~l~~~~~~l 409 (1099)
+.++.++.+++...
T Consensus 611 R~Ei~~LqrRlqaa 624 (961)
T KOG4673|consen 611 RGEIEDLQRRLQAA 624 (961)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 124
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=3.8e-05 Score=69.65 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=24.2
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHhccc
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVLSDI 52 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~Lg~~ 52 (1099)
|.| ....|+|||||||||++..|.-.+-..
T Consensus 25 l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~ 55 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTLLRILAGLLRPD 55 (209)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcccCCC
Confidence 444 477899999999999999998777443
No 125
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.60 E-value=4e-05 Score=72.42 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.2
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHH
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAI 45 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai 45 (1099)
|.+ .+++|+|||||||||++.+|
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 555 48899999999999999987
No 126
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.60 E-value=5.4e-05 Score=70.14 Aligned_cols=25 Identities=20% Similarity=0.531 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
..+|+|+||+||||||++.++--+-
T Consensus 33 ~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred CceEEEECCCCcCHHHHHHHHHhhc
Confidence 5699999999999999999986443
No 127
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.59 E-value=7e-05 Score=68.80 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=21.6
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
|.+| +++|+|||||||||++++|.-.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 5555 7889999999999999998533
No 128
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.58 E-value=0.21 Score=55.78 Aligned_cols=9 Identities=22% Similarity=0.671 Sum_probs=5.1
Q ss_pred CCceeecCc
Q 001328 134 NPYYVVQQG 142 (1099)
Q Consensus 134 ~~~~~i~qg 142 (1099)
.||.+|.+.
T Consensus 24 sp~qvidln 32 (1265)
T KOG0976|consen 24 SPFQVIDLN 32 (1265)
T ss_pred CCceeeecc
Confidence 456666554
No 129
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.57 E-value=0.33 Score=57.68 Aligned_cols=42 Identities=14% Similarity=0.313 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--eEEEEE
Q 001328 1003 ELISVLDQRKDESIERTFKGVARHFREVFSELVQGG--HGHLVM 1044 (1099)
Q Consensus 1003 ~~i~~l~~~~~~~~~~~f~~in~~f~~~f~~lf~gG--~a~L~l 1044 (1099)
..+..+..-...........+...+.++|..|+.+. ...+.+
T Consensus 487 ~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~k~~~~~~v~i 530 (650)
T TIGR03185 487 KAKKTLKEFREKLLERKLQQLEEEITKSFKKLMRKHNLISRLKI 530 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCceeEEEE
Confidence 333333333333444445556666777777777542 244444
No 130
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.56 E-value=7.7e-05 Score=74.49 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=23.5
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+|+.+|+|||||||||++.+|.-.+
T Consensus 23 i~~g~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 23 LGPGMYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EcCCcEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999997444
No 131
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.56 E-value=3.6e-05 Score=72.69 Aligned_cols=44 Identities=14% Similarity=0.390 Sum_probs=31.1
Q ss_pred EEEec-ccccccccc-cc--c--CC-CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 6 VIIEG-FKSYREQIA-TE--P--FS-PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 6 l~l~~-f~sf~~~~~-~~--~--f~-~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|++.| ++.|.+.+. .. . ++ ..+.+|+||+||||||||.+|....
T Consensus 4 i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred EEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc
Confidence 66777 677843331 11 1 22 3588999999999999999998744
No 132
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.55 E-value=5.3e-05 Score=69.36 Aligned_cols=40 Identities=30% Similarity=0.556 Sum_probs=30.7
Q ss_pred cccccccc----ccccCC---CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 11 FKSYREQI----ATEPFS---PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 11 f~sf~~~~----~~~~f~---~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+|+|.+.+ .+ .|. ..+++|.|||||||||++..|.-.|-+
T Consensus 8 ~K~y~~~v~AvrdV-SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P 54 (245)
T COG4555 8 TKSYGSKVQAVRDV-SFEAEEGEITGLLGENGAGKTTLLRMIATLLIP 54 (245)
T ss_pred hhhccCHHhhhhhe-eEEeccceEEEEEcCCCCCchhHHHHHHHhccC
Confidence 66776654 22 354 569999999999999999999877744
No 133
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.54 E-value=0.42 Score=58.07 Aligned_cols=91 Identities=9% Similarity=0.209 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHHHhccCccCcHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 948 GVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDQRKDESIERTFKGVARHF 1027 (1099)
Q Consensus 948 ~~~~l~~~l~~l~~~l~~l~~vn~~a~ee~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~~~~~f~~in~~f 1027 (1099)
....++..+..++.+|.. .+|.....+|...-....+...+..+|+.+...+|......+...+..||..+
T Consensus 1063 ~~ke~e~~i~~~k~eL~~---------~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~Aim~fHs~KMeeiN~iI 1133 (1294)
T KOG0962|consen 1063 EMKQYESQIKKLKQELRE---------KDFKDAEKNYRKALIELKTTELSNKDLDKYYKALDKAIMQFHSMKMEEINRII 1133 (1294)
T ss_pred HHHHHHHHHHHHHHHhhh---------hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888864 24777788888888889999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCceEEEEEeec
Q 001328 1028 REVFSELVQGGHGHLVMMKK 1047 (1099)
Q Consensus 1028 ~~~f~~lf~gG~a~L~l~~~ 1047 (1099)
.++|+..|.|-...-+-+|.
T Consensus 1134 ~elW~~tYrG~Did~IrIrs 1153 (1294)
T KOG0962|consen 1134 RELWRKTYRGTDIDYIKIRS 1153 (1294)
T ss_pred HHHHHhccCCCCcceEEEee
Confidence 99999999999877776444
No 134
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.54 E-value=0.3 Score=56.36 Aligned_cols=21 Identities=29% Similarity=0.301 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 001328 1014 ESIERTFKGVARHFREVFSEL 1034 (1099)
Q Consensus 1014 ~~~~~~f~~in~~f~~~f~~l 1034 (1099)
..+...|..++..+..++..|
T Consensus 440 ~~y~~~~~~~~~~i~~l~~~L 460 (560)
T PF06160_consen 440 EDYLDYFFDVSDEIEELSDEL 460 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777776655
No 135
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.54 E-value=0.28 Score=55.99 Aligned_cols=11 Identities=18% Similarity=0.139 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 001328 981 TEQREELQRRQ 991 (1099)
Q Consensus 981 ~~~~~~l~~q~ 991 (1099)
.+.+..|..-.
T Consensus 560 h~~c~~Li~~v 570 (594)
T PF05667_consen 560 HENCSQLIETV 570 (594)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 136
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.21 Score=56.21 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 461 QRDKMQDERKSLWVKESELCAEIDKL 486 (1099)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~l~~l 486 (1099)
+.+++.-.+......+..+...+..+
T Consensus 912 eqee~~v~~~~~~~~i~alk~~l~dL 937 (970)
T KOG0946|consen 912 EQEELLVLLADQKEKIQALKEALEDL 937 (970)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 33333333333333444444444333
No 137
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.52 E-value=9.7e-05 Score=74.01 Aligned_cols=27 Identities=26% Similarity=0.554 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.|| +++|+|||||||||++.+|.-.+
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455 88999999999999999997443
No 138
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.48 E-value=9.1e-05 Score=70.17 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=30.6
Q ss_pred EEEeccccccccccc-c--cCC---CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 6 VIIEGFKSYREQIAT-E--PFS---PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 6 l~l~~f~sf~~~~~~-~--~f~---~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
|++.|...|.+...+ . +|. ..+++|+||||+||||++.||.-...
T Consensus 4 L~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~ 54 (237)
T COG0410 4 LEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR 54 (237)
T ss_pred eeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455665555544322 0 122 46899999999999999999975553
No 139
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.48 E-value=0.048 Score=49.16 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 870 VSDSIVQLTKELNKIKDEKTKLKTLEDNYERKLQDDARELEQLLSRRNILLAKQEEYSKKI 930 (1099)
Q Consensus 870 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 930 (1099)
+...+..++.++......+......+.+.......+...+..+......++.+++.+...+
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444555555555555555555554444
No 140
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.47 E-value=9.1e-05 Score=72.98 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=25.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhccccc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSDIFQ 54 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~ 54 (1099)
..+.++.|||||||||++..|.-.+....+
T Consensus 28 Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G 57 (345)
T COG1118 28 GELVALLGPSGAGKSTLLRIIAGLETPDAG 57 (345)
T ss_pred CcEEEEECCCCCcHHHHHHHHhCcCCCCCc
Confidence 568999999999999999999877765433
No 141
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.46 E-value=0.00011 Score=74.15 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=21.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
+.+| +++|+|||||||||++.+|.-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 4454 889999999999999998753
No 142
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.45 E-value=0.37 Score=55.34 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 855 DAKSFVEDARQELKRVSDSIVQLTKELNKIKDEKTKLKTLEDNYERKLQDDAREL 909 (1099)
Q Consensus 855 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1099)
+++..+.+++..+-.+..+.-++...+..-......+..++.++...+..+...+
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~l 218 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKL 218 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333334444444333333333
No 143
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.45 E-value=0.31 Score=54.51 Aligned_cols=11 Identities=18% Similarity=0.066 Sum_probs=5.3
Q ss_pred HHHHHHHHhhc
Q 001328 1025 RHFREVFSELV 1035 (1099)
Q Consensus 1025 ~~f~~~f~~lf 1035 (1099)
.+|.+.|...+
T Consensus 662 st~sE~dts~y 672 (1265)
T KOG0976|consen 662 STFSEADTSDY 672 (1265)
T ss_pred HHHHHHHHHHh
Confidence 34555555443
No 144
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.45 E-value=0.36 Score=55.14 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 001328 747 LADVRTQLDQLEASMAMKQAEMN 769 (1099)
Q Consensus 747 ~~~l~~~l~~l~~~l~~~~~~~~ 769 (1099)
+..|+.-+.....++..+..+++
T Consensus 396 i~kL~~~v~~s~~rl~~L~~qWe 418 (594)
T PF05667_consen 396 IAKLQALVEASEQRLVELAQQWE 418 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444333
No 145
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.45 E-value=0.00012 Score=75.14 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.+| +++|+|||||||||++.+|.-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4555 8999999999999999998644
No 146
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.44 E-value=0.48 Score=56.43 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=4.7
Q ss_pred EEEecccc
Q 001328 6 VIIEGFKS 13 (1099)
Q Consensus 6 l~l~~f~s 13 (1099)
|+|..|||
T Consensus 214 ikLADFGs 221 (1317)
T KOG0612|consen 214 IKLADFGS 221 (1317)
T ss_pred Eeeccchh
Confidence 55666665
No 147
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.44 E-value=0.00013 Score=74.56 Aligned_cols=27 Identities=37% Similarity=0.699 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 4455 88999999999999999986444
No 148
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=0.00013 Score=74.40 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4454 88999999999999999997444
No 149
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.44 E-value=0.00012 Score=75.07 Aligned_cols=27 Identities=22% Similarity=0.620 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4455 89999999999999999986443
No 150
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.43 E-value=0.0001 Score=71.39 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=22.9
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5555 88999999999999999987554
No 151
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.00015 Score=69.40 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=27.2
Q ss_pred EEEec-ccccccccccccCC----C-CcEEEEcCCCCChhHHHHHHHH
Q 001328 6 VIIEG-FKSYREQIATEPFS----P-QVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 6 l~l~~-f~sf~~~~~~~~f~----~-~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
|.+.| .-.|.+..+.++++ | .--+|+|||||||||++.-+.-
T Consensus 32 i~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~ 79 (257)
T COG1119 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG 79 (257)
T ss_pred EEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhc
Confidence 44455 33455555543333 3 3558999999999999976653
No 152
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.42 E-value=0.00015 Score=68.50 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=21.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.|| +.+|+|||||||||++.+|.-.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4454 8889999999999999988643
No 153
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00015 Score=72.96 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444 588999999999999999987444
No 154
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00014 Score=72.50 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=22.6
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555 78999999999999999997444
No 155
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.42 E-value=0.24 Score=52.46 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001328 672 IIMRNTKTINAREEEVEK 689 (1099)
Q Consensus 672 ~l~~l~~~~~~l~~~l~~ 689 (1099)
++..++.++..+...+..
T Consensus 39 ~l~q~q~ei~~~~~~i~~ 56 (420)
T COG4942 39 QLKQIQKEIAALEKKIRE 56 (420)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455444444444
No 156
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.41 E-value=0.00015 Score=72.15 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=22.2
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 444 488999999999999999986443
No 157
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.41 E-value=0.00015 Score=71.81 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455 89999999999999999886544
No 158
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00015 Score=74.31 Aligned_cols=27 Identities=19% Similarity=0.565 Sum_probs=22.8
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4555 89999999999999999997544
No 159
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.00017 Score=69.07 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555 88999999999999999875433
No 160
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.40 E-value=3.7e-05 Score=82.54 Aligned_cols=24 Identities=50% Similarity=0.953 Sum_probs=0.0
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+|+|+||||||||||++||.+++.
T Consensus 1 i~viiG~N~sGKS~il~ai~~~~~ 24 (303)
T PF13304_consen 1 INVIIGPNGSGKSNILEAIYFLFS 24 (303)
T ss_dssp ------------------------
T ss_pred CCcccccccccccccccccccccc
Confidence 689999999999999999999875
No 161
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.39 E-value=0.00015 Score=72.90 Aligned_cols=27 Identities=22% Similarity=0.392 Sum_probs=22.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4454 88999999999999999997554
No 162
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.39 E-value=0.0002 Score=67.93 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=22.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4454 88999999999999999986444
No 163
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00015 Score=74.15 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++..|.-.+
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4454 89999999999999999987544
No 164
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.38 E-value=0.29 Score=52.67 Aligned_cols=124 Identities=13% Similarity=0.175 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 848 SKKQELADAKSFVEDARQELKRVSDSIVQLTKELNKIKDEKTKLKTLEDNYERKLQDDARELEQLLSRRNILLAKQEEYS 927 (1099)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1099)
.++.++.++.+.+..+...+..-...+..++..+..+...+..++.+..++...+..++..--.+.....++..++..+.
T Consensus 351 ~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eik 430 (570)
T COG4477 351 KFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIK 430 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444455555555555555555555555555555444443333444555555555555
Q ss_pred HHHHh--cCCCChhhhhhhccCCHHHHHHHHHHHHHHhccCccCcHHHHHHH
Q 001328 928 KKIRE--LGPLSSDAFDTYKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQY 977 (1099)
Q Consensus 928 ~~l~~--~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~vn~~a~ee~ 977 (1099)
+.+.. +..+|...+.- ......++..+..+|.. +|+|+.++...
T Consensus 431 R~mek~nLPGlPe~~l~l-----~~~~~~~i~~l~~eLse-~pinm~~v~~~ 476 (570)
T COG4477 431 RYMEKSNLPGLPETFLSL-----FFTAGHEIQDLMKELSE-VPINMEAVSAL 476 (570)
T ss_pred HHHHHcCCCCCcHHHHHH-----HHhhhhHHHHHHHHHhh-cCCcHHHHHHH
Confidence 55544 45677665442 33455677777777776 68888766554
No 165
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00014 Score=74.16 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3588999999999999999986444
No 166
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.38 E-value=0.00015 Score=72.76 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=22.0
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4454 88999999999999999886443
No 167
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.38 E-value=0.00012 Score=69.32 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=22.5
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++..|.-.+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 444 488999999999999999887554
No 168
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00018 Score=71.95 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=22.1
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444 488999999999999999986443
No 169
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.36 E-value=0.00011 Score=71.74 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5555 89999999999999999886443
No 170
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.36 E-value=0.00018 Score=72.84 Aligned_cols=27 Identities=15% Similarity=0.460 Sum_probs=23.0
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4455 88999999999999999997665
No 171
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.36 E-value=0.00024 Score=64.58 Aligned_cols=51 Identities=20% Similarity=0.312 Sum_probs=33.1
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCC--------CcceEEEEEEEEeC
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAG--------HQVLSAFVEIVFDN 84 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~--------~~~~~a~v~~~f~~ 84 (1099)
.+..|+||+||||||++.-|.-..-.+.+. ++++|.+ -|..+-.|.++|.+
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt~G~--------i~~~~~dl~~l~~~~iP~LRR~IGvVFQD 87 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPTRGK--------ILVNGHDLSRLKGREIPFLRRQIGVVFQD 87 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCCCce--------EEECCeecccccccccchhhheeeeEeee
Confidence 478899999999999998887555333332 2333322 24445567788854
No 172
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.36 E-value=0.00012 Score=67.26 Aligned_cols=27 Identities=37% Similarity=0.733 Sum_probs=22.2
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEccCCCccccceeeecccc
Confidence 444 589999999999999999876554
No 173
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.00018 Score=72.30 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4454 88999999999999999987443
No 174
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.35 E-value=0.00016 Score=64.37 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=20.6
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.-++|||||||||++.++.-++.+
T Consensus 27 ~~HliGPNGaGKSTLLA~lAGm~~~ 51 (248)
T COG4138 27 ILHLVGPNGAGKSTLLARMAGMTSG 51 (248)
T ss_pred EEEEECCCCccHHHHHHHHhCCCCC
Confidence 3358999999999999998766644
No 175
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.00019 Score=74.66 Aligned_cols=27 Identities=44% Similarity=0.693 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4455 89999999999999999886444
No 176
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.35 E-value=0.00021 Score=70.46 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=22.1
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+.+|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444 488999999999999999886444
No 177
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.00021 Score=68.86 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=22.0
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+.+|+|||||||||++.+|.-.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444 488899999999999999986443
No 178
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.00014 Score=68.53 Aligned_cols=27 Identities=37% Similarity=0.655 Sum_probs=23.1
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++++|...+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 555 488999999999999999997655
No 179
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.35 Score=52.64 Aligned_cols=99 Identities=15% Similarity=0.234 Sum_probs=42.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhCCHHHHHHHhhh
Q 001328 708 TDAKRAHDKSELEQLKQDIANANKQKQIISKALENKEKSLADVRTQLDQLEASMAMKQAEMNTDLIDHLSLDEKNLLSRL 787 (1099)
Q Consensus 708 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 787 (1099)
++.....++.....++.-+..+...-..+...+..+..++...+.+++.++.....++..++.. .+.. .+++..
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q---~iS~---~dve~m 337 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ---GISG---EDVERM 337 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCH---HHHHHH
Confidence 3333333444444444333444444444444444444455555555555555555555444311 1111 224444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 788 NPEITELKEKLITCRTDRIEYETRK 812 (1099)
Q Consensus 788 ~~~~~~~~~~l~~~~~~~~~~~~~~ 812 (1099)
..+...+...+..+..++..+...+
T Consensus 338 n~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 338 NLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333
No 180
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00019 Score=73.63 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445 488999999999999999987443
No 181
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.00017 Score=74.32 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=22.9
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++++|.-.+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 5565 89999999999999999997544
No 182
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.32 E-value=0.00023 Score=72.75 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=22.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 5554 89999999999999999987544
No 183
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.32 E-value=0.00019 Score=72.33 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4454 88999999999999999986544
No 184
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.32 E-value=0.0002 Score=74.14 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455 88999999999999999986433
No 185
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.32 E-value=0.00017 Score=74.61 Aligned_cols=27 Identities=33% Similarity=0.620 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455 88999999999999999986444
No 186
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.32 E-value=0.00021 Score=69.05 Aligned_cols=29 Identities=21% Similarity=0.364 Sum_probs=24.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+| +++|+||+||||||+|..|.+..-+
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 3444 8899999999999999988877655
No 187
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.31 E-value=0.00021 Score=70.46 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+.+|+|||||||||++.+|.-.+
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4588999999999999999886443
No 188
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.00019 Score=74.11 Aligned_cols=27 Identities=26% Similarity=0.641 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444 88999999999999999997544
No 189
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.31 E-value=0.00022 Score=72.39 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++..|.-.+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455 89999999999999999987444
No 190
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.31 E-value=0.00022 Score=67.83 Aligned_cols=47 Identities=21% Similarity=0.442 Sum_probs=35.1
Q ss_pred EEEEec-ccccccccccccCC-----CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 5 QVIIEG-FKSYREQIATEPFS-----PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 5 ~l~l~~-f~sf~~~~~~~~f~-----~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
-|++.| .++|.+..+.+..+ ..+++|+||+||||||++..|.-.+-.
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P 60 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP 60 (263)
T ss_pred eEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC
Confidence 356666 56787777654322 568899999999999999999766643
No 191
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.31 E-value=0.00025 Score=69.75 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=21.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
+.+| +++|+|||||||||++.+|.-
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G 48 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMG 48 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4555 899999999999999999853
No 192
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.31 E-value=0.00014 Score=70.89 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~ 46 (1099)
|++| +++|+|||||||||++.+|.
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHH
Confidence 5555 88999999999999999995
No 193
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.31 E-value=0.00014 Score=73.26 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=22.9
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5555 89999999999999999997544
No 194
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.30 E-value=0.0029 Score=75.65 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001328 903 QDDARELEQLLSRRNIL 919 (1099)
Q Consensus 903 ~~~~~~~~~~~~~~~~~ 919 (1099)
..++.++..++....++
T Consensus 609 ~~l~~~~~~~ekr~~RL 625 (722)
T PF05557_consen 609 AELKAELASAEKRNQRL 625 (722)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444443333
No 195
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.0003 Score=67.28 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=22.7
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 444 489999999999999999997555
No 196
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.29 E-value=0.00022 Score=70.68 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=21.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+.+|+|||||||||++.+|.-.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3488999999999999999886443
No 197
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.29 E-value=0.00026 Score=71.98 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=22.6
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+.+|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 445 488999999999999999997554
No 198
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.29 E-value=0.00014 Score=72.09 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445 488999999999999999986444
No 199
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.00024 Score=70.99 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455 88999999999999999986444
No 200
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.29 E-value=0.00029 Score=67.44 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=22.5
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 444 488999999999999999997544
No 201
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.29 E-value=0.00026 Score=70.94 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455 78999999999999999986443
No 202
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.00027 Score=71.70 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.|| +++|+|||||||||++++|.-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5565 88999999999999999996444
No 203
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.00022 Score=73.72 Aligned_cols=27 Identities=22% Similarity=0.582 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++..|.-.+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4454 88999999999999999987554
No 204
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.29 E-value=0.00019 Score=74.75 Aligned_cols=28 Identities=29% Similarity=0.553 Sum_probs=23.6
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHhc
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
|.+| +++++|||||||||+|.+|.-.+-
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5566 999999999999999999875553
No 205
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.48 Score=53.00 Aligned_cols=8 Identities=38% Similarity=1.045 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 001328 167 VYEERRRE 174 (1099)
Q Consensus 167 ~~~~~~~e 174 (1099)
.|.+++++
T Consensus 313 TFEDKrke 320 (1118)
T KOG1029|consen 313 TFEDKRKE 320 (1118)
T ss_pred chhhhhHH
Confidence 45554433
No 206
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.28 E-value=0.00022 Score=76.04 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=29.8
Q ss_pred EEEEec-cccccccccccc----CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 5 QVIIEG-FKSYREQIATEP----FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 5 ~l~l~~-f~sf~~~~~~~~----f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
-|.+.| -++|.+...+.+ +.+ .+++|+|||||||||++.+|.-.+
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 355666 234544332211 334 488999999999999999997544
No 207
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.28 E-value=0.0002 Score=73.63 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=21.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
|.+| +++|+|||||||||+++.|.-.
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 33 IPNNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455 8899999999999999988743
No 208
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.27 E-value=0.0002 Score=71.51 Aligned_cols=27 Identities=30% Similarity=0.504 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4454 88999999999999999987444
No 209
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=0.00026 Score=72.37 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=22.2
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444 488999999999999999986443
No 210
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00025 Score=73.16 Aligned_cols=27 Identities=19% Similarity=0.531 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+||||||||||+.+|.-.+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 30 ILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4455 88999999999999999986444
No 211
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.27 E-value=0.00016 Score=71.73 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|++ .+++|+|||||||||++..|.-.+
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 554 488999999999999999887443
No 212
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.27 E-value=0.00028 Score=70.68 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +.+|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455 78899999999999999987544
No 213
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00023 Score=73.23 Aligned_cols=27 Identities=19% Similarity=0.552 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4454 88999999999999999986443
No 214
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00023 Score=73.76 Aligned_cols=27 Identities=19% Similarity=0.561 Sum_probs=22.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 30 IPDGHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4455 89999999999999999886444
No 215
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.26 E-value=0.67 Score=54.32 Aligned_cols=10 Identities=20% Similarity=0.743 Sum_probs=6.1
Q ss_pred ccchhhHHHH
Q 001328 533 DCDEKFFTAV 542 (1099)
Q Consensus 533 ~~~~~~~~ai 542 (1099)
.+.+.|..|+
T Consensus 344 s~s~SWAsaL 353 (769)
T PF05911_consen 344 SCSDSWASAL 353 (769)
T ss_pred cccchhHHHH
Confidence 3456677665
No 216
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.00025 Score=73.20 Aligned_cols=27 Identities=22% Similarity=0.513 Sum_probs=22.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4455 88999999999999999886443
No 217
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.26 E-value=0.00028 Score=71.36 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++++|.-.+
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3588999999999999999997554
No 218
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.00026 Score=72.89 Aligned_cols=27 Identities=22% Similarity=0.565 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +.+|+|||||||||++.+|.-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4455 88999999999999999987543
No 219
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.00025 Score=72.20 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4454 88999999999999999987544
No 220
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.25 E-value=0.00025 Score=73.18 Aligned_cols=25 Identities=32% Similarity=0.768 Sum_probs=21.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
|.+| +.+|+||||||||||+.+|.-
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4455 899999999999999999864
No 221
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.25 E-value=0.0003 Score=71.40 Aligned_cols=27 Identities=37% Similarity=0.674 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4454 89999999999999999887444
No 222
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.25 E-value=0.00022 Score=72.63 Aligned_cols=26 Identities=27% Similarity=0.644 Sum_probs=21.6
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
|.+ .+++|+|||||||||++.+|.-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445 48899999999999999998633
No 223
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00023 Score=73.30 Aligned_cols=27 Identities=33% Similarity=0.672 Sum_probs=22.5
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444 488999999999999999997554
No 224
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.24 E-value=0.00033 Score=69.11 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=22.2
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444 488999999999999999886444
No 225
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.24 E-value=0.00027 Score=73.51 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=30.0
Q ss_pred EEEEec-ccccccccccccC----CCC-cEEEEcCCCCChhHHHHHHH
Q 001328 5 QVIIEG-FKSYREQIATEPF----SPQ-VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 5 ~l~l~~-f~sf~~~~~~~~f----~~~-~~~I~G~NGsGKS~i~~ai~ 46 (1099)
-|+|.| -|+|.+...++++ .+| +.++.||+||||||+|.+|.
T Consensus 5 ~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred eEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHh
Confidence 456666 4566655444222 354 88899999999999999987
No 226
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.24 E-value=0.0003 Score=71.58 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.+| +.+|+|||||||||++++|.-.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5565 8899999999999999999633
No 227
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.24 E-value=0.00027 Score=71.22 Aligned_cols=27 Identities=15% Similarity=0.503 Sum_probs=21.8
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+.+|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 444 488999999999999999986433
No 228
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0002 Score=67.55 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=27.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc-cccccchhhhhhhhccCCC
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLRSEDRHALLHEGAG 70 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~~~~~~~~i~~g~~ 70 (1099)
-+++|.|||||||||+..+|. |- .+.-..| +++|+|.+
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~---G~p~Y~Vt~G----~I~~~Ged 69 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIM---GHPKYEVTEG----EILFDGED 69 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCceEecc----eEEECCcc
Confidence 488999999999999997663 33 3444445 67777765
No 229
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.24 E-value=0.00032 Score=70.76 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=22.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555 88999999999999999887544
No 230
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.24 E-value=0.00029 Score=72.56 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=22.1
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445 488999999999999999986433
No 231
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.23 E-value=0.00021 Score=74.14 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4454 88999999999999999887444
No 232
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.23 E-value=0.00028 Score=72.09 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +.+|+|||||||||++.+|.-.+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4454 88999999999999999987544
No 233
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.23 E-value=0.00018 Score=73.62 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=30.9
Q ss_pred CeeeEEEEecccccccccccccCCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+..|.+.+ -+.+.++. +.+ .+++|+|||||||||++.+|.-.+
T Consensus 1 ~~~~~l~~~~--~l~~vsl~--i~~Gei~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 1 MQLNDVAVST--RLGPLSAE--VRAGEILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred Ccccccchhc--eecceEEE--EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 5566666642 34444333 444 588999999999999999986443
No 234
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.23 E-value=0.00032 Score=67.71 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=21.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
|.+| +++|+|||||||||++.+|.-
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G 47 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5554 889999999999999998863
No 235
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.00025 Score=74.18 Aligned_cols=26 Identities=31% Similarity=0.672 Sum_probs=21.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.+| +++|+||||||||||+.+|.-.
T Consensus 62 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 62 ILSKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4454 8899999999999999999643
No 236
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.22 E-value=0.00025 Score=70.94 Aligned_cols=27 Identities=37% Similarity=0.624 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4455 89999999999999999885433
No 237
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.00028 Score=72.68 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4444 88999999999999999987544
No 238
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.00028 Score=73.16 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=22.4
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 43 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 43 FEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 444 489999999999999999986544
No 239
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.22 E-value=0.00031 Score=72.35 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=21.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.+| +++|+|||||||||++++|.-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 24 VRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4444 8899999999999999987644
No 240
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.22 E-value=0.00027 Score=72.87 Aligned_cols=27 Identities=33% Similarity=0.673 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4454 88999999999999999986443
No 241
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.22 E-value=0.00027 Score=71.09 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=21.7
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
|.+ .+++|+|||||||||++.+|.-.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 445 48899999999999999998643
No 242
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.21 E-value=0.0003 Score=72.61 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
|.|| +++|+|||||||||++.+|.-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 30 INKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 4455 889999999999999998754
No 243
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.21 E-value=0.00031 Score=70.48 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=22.5
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444 488999999999999999987544
No 244
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.21 E-value=0.00033 Score=71.04 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4455 88999999999999999996443
No 245
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.21 E-value=0.00022 Score=64.19 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
..+++|+||+||||||+++-|.-...+
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCC
Confidence 468899999999999999999755544
No 246
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.00026 Score=73.34 Aligned_cols=27 Identities=30% Similarity=0.557 Sum_probs=22.0
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+||||||||||+.+|.-.+
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 344 488999999999999999886443
No 247
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.20 E-value=0.00033 Score=71.86 Aligned_cols=27 Identities=19% Similarity=0.511 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4444 88999999999999999987444
No 248
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.20 E-value=0.00037 Score=71.11 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=22.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4454 89999999999999999997554
No 249
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.19 E-value=0.00031 Score=74.27 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
+.+| +++|+|||||||||++.+|.-
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~G 52 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLG 52 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3444 889999999999999999863
No 250
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.19 E-value=0.00028 Score=72.07 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3588999999999999999986444
No 251
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.19 E-value=0.00031 Score=71.66 Aligned_cols=27 Identities=26% Similarity=0.599 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334 488999999999999999987554
No 252
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.19 E-value=0.00029 Score=67.43 Aligned_cols=44 Identities=25% Similarity=0.396 Sum_probs=30.3
Q ss_pred EEec-ccccccccccccCC-----CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 7 IIEG-FKSYREQIATEPFS-----PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 7 ~l~~-f~sf~~~~~~~~f~-----~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
++.| -|.|.+...+++++ ..+.+++||+||||||+|..|--.+-
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC
Confidence 3444 35566555443332 45889999999999999999975553
No 253
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.19 E-value=0.00034 Score=72.11 Aligned_cols=26 Identities=19% Similarity=0.686 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
|.+| +++|+||||||||||+.+|.-+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4455 8999999999999999999643
No 254
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.18 E-value=0.0003 Score=73.08 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4454 88999999999999999997544
No 255
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.18 E-value=0.0003 Score=73.11 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455 99999999999999999997655
No 256
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.18 E-value=0.00033 Score=72.79 Aligned_cols=27 Identities=19% Similarity=0.599 Sum_probs=22.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 47 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 47 IHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4454 89999999999999999997554
No 257
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.00032 Score=72.35 Aligned_cols=27 Identities=22% Similarity=0.591 Sum_probs=22.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3354 88999999999999999996444
No 258
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.00035 Score=72.27 Aligned_cols=27 Identities=22% Similarity=0.706 Sum_probs=22.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+++| +++|+||||||||||+.+|.-.+
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4455 88999999999999999997554
No 259
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.00031 Score=72.61 Aligned_cols=27 Identities=22% Similarity=0.532 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 36 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 36 IAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 334 488999999999999999996544
No 260
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.17 E-value=0.00038 Score=69.92 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
|.+| +++|+|||||||||++++|.-.
T Consensus 28 i~~G~~~~I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455 9999999999999999999643
No 261
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.00022 Score=72.36 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=22.6
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4454 88999999999999999997544
No 262
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.15 E-value=0.00033 Score=72.82 Aligned_cols=27 Identities=26% Similarity=0.591 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +.+|+|||||||||++.+|.-.+
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 44 IEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4455 88999999999999999996543
No 263
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.15 E-value=0.00016 Score=72.64 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHH
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
|.+ .+.+|+|||||||||++.+|.-
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 444 4889999999999999999874
No 264
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.15 E-value=0.00025 Score=70.63 Aligned_cols=27 Identities=22% Similarity=0.532 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4454 88999999999999999997544
No 265
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.15 E-value=0.00032 Score=62.12 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=22.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
...+|+||+||||||++.+|......
T Consensus 30 e~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccCC
Confidence 47789999999999999999876644
No 266
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.15 E-value=0.00036 Score=72.36 Aligned_cols=27 Identities=22% Similarity=0.536 Sum_probs=22.5
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.| .+++|+|||||||||++.+|.-.+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 42 IPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444 588999999999999999987544
No 267
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.15 E-value=0.00037 Score=72.14 Aligned_cols=27 Identities=15% Similarity=0.447 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+||||||||||+.+|.-.+
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 33 IPKNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4444 88999999999999999997544
No 268
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.15 E-value=0.00027 Score=69.70 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~ 46 (1099)
+++| +++|+|||||||||++.+|.
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHH
Confidence 4555 99999999999999999997
No 269
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.15 E-value=0.00029 Score=66.83 Aligned_cols=44 Identities=36% Similarity=0.562 Sum_probs=32.3
Q ss_pred EEEec-cccccccccccc--CC---CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 6 VIIEG-FKSYREQIATEP--FS---PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 6 l~l~~-f~sf~~~~~~~~--f~---~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|+|.| -|+|++.+.+.+ |. ..+..++||||+||||++..|.-.|
T Consensus 3 L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll 52 (300)
T COG4152 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL 52 (300)
T ss_pred eEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC
Confidence 56666 467777765532 22 3588999999999999999887555
No 270
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.00026 Score=69.74 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||+++.|.-.+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 4454 88999999999999999876444
No 271
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.00046 Score=70.32 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=22.6
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +.+|+|||||||||++.+|.-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5555 88999999999999999986554
No 272
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.00025 Score=69.24 Aligned_cols=24 Identities=25% Similarity=0.663 Sum_probs=20.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~ 46 (1099)
|.+| +++|+|||||||||++.+|.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHh
Confidence 3454 88999999999999999986
No 273
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.14 E-value=0.00036 Score=71.75 Aligned_cols=25 Identities=24% Similarity=0.479 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-+.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14245 29 KSVVAFIGPSGCGKSTFLRLFNRMN 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhh
Confidence 3588999999999999999997543
No 274
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.14 E-value=0.00038 Score=72.12 Aligned_cols=27 Identities=19% Similarity=0.484 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 444 489999999999999999997444
No 275
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.0004 Score=71.47 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++++|.-.+
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4455 88999999999999999986443
No 276
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.00039 Score=71.88 Aligned_cols=27 Identities=22% Similarity=0.551 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +.+|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (261)
T PRK14258 30 IYQSKVTAIIGPSGCGKSTFLKCLNRMN 57 (261)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 4454 88999999999999999997443
No 277
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.13 E-value=0.00036 Score=73.69 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=21.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.+| +++|+|||||||||++.+|.-.
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3455 9999999999999999988633
No 278
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.00028 Score=73.22 Aligned_cols=27 Identities=22% Similarity=0.538 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444 488999999999999999986544
No 279
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.13 E-value=0.00036 Score=71.51 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4454 88999999999999999987544
No 280
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.00038 Score=72.43 Aligned_cols=27 Identities=33% Similarity=0.584 Sum_probs=22.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455 88999999999999999986443
No 281
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.00039 Score=71.81 Aligned_cols=26 Identities=23% Similarity=0.612 Sum_probs=21.8
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.+| +++|+|||||||||++.+|.-.
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 35 IPKNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4455 8899999999999999998643
No 282
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.00035 Score=72.48 Aligned_cols=26 Identities=19% Similarity=0.519 Sum_probs=21.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.+| +++|+||||||||||+.+|.-.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 36 IPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4454 8899999999999999998744
No 283
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.0004 Score=71.00 Aligned_cols=25 Identities=28% Similarity=0.487 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 29 GEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3588999999999999999997544
No 284
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.00044 Score=71.17 Aligned_cols=27 Identities=19% Similarity=0.524 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++++|.-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 26 IPARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4454 88999999999999999996443
No 285
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.12 E-value=0.0004 Score=69.31 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=22.1
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 344 488999999999999999996443
No 286
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.12 E-value=0.00042 Score=73.10 Aligned_cols=46 Identities=15% Similarity=0.297 Sum_probs=29.8
Q ss_pred eEEEEeccc-ccccccccc----cCCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 4 KQVIIEGFK-SYREQIATE----PFSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 4 ~~l~l~~f~-sf~~~~~~~----~f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.-|.+.|.. +|.+.+.+. .+.+| +++|+|||||||||++.+|.-.+
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345566632 344433221 13354 88999999999999999987444
No 287
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.12 E-value=0.00038 Score=72.00 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=21.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 31 QEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCc
Confidence 3488999999999999999887443
No 288
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.11 E-value=0.00031 Score=71.02 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444 489999999999999999986444
No 289
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.11 E-value=0.0003 Score=71.23 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4599999999999999999997544
No 290
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.11 E-value=0.00031 Score=58.87 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=20.8
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHH
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
+.+ .+++|+||+||||||++.++.
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 455 478999999999999999975
No 291
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.11 E-value=0.00031 Score=71.07 Aligned_cols=27 Identities=37% Similarity=0.415 Sum_probs=22.5
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+||||||||||+.+|.-.+
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444 489999999999999999987444
No 292
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.10 E-value=0.00049 Score=69.82 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +.+|+|||||||||++.+|.-.+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4454 88999999999999999886443
No 293
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.10 E-value=0.00031 Score=70.50 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=22.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4454 89999999999999999987554
No 294
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.10 E-value=0.00036 Score=75.66 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
..+++|+|||||||||++.+|.-.+
T Consensus 29 Geiv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 29 GSLVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3578999999999999999987444
No 295
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.10 E-value=0.00055 Score=65.99 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=22.2
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 444 488899999999999999986444
No 296
>PRK10908 cell division protein FtsE; Provisional
Probab=97.10 E-value=0.00042 Score=69.79 Aligned_cols=27 Identities=22% Similarity=0.488 Sum_probs=22.0
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444 588999999999999999986433
No 297
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.10 E-value=0.00048 Score=71.17 Aligned_cols=27 Identities=22% Similarity=0.567 Sum_probs=22.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+||||||||||+..|.-.+
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 30 IYRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4454 88999999999999999998554
No 298
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.10 E-value=0.00048 Score=70.97 Aligned_cols=27 Identities=26% Similarity=0.607 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4454 88999999999999999997554
No 299
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.09 E-value=0.00045 Score=71.82 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+||||||||||+.+|.-.+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455 89999999999999999886443
No 300
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.09 E-value=0.00046 Score=71.21 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=22.2
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+.+|+|||||||||++.+|.-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444 488999999999999999887544
No 301
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.09 E-value=0.00034 Score=68.80 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.6
Q ss_pred CCCC--cEEEEcCCCCChhHHHHHHH
Q 001328 23 FSPQ--VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 23 f~~~--~~~I~G~NGsGKS~i~~ai~ 46 (1099)
+++| +.+|+|||||||||+++.|.
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHH
Confidence 5666 79999999999999999987
No 302
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.09 E-value=0.0003 Score=74.33 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=22.6
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 16 VREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5555 88999999999999999987444
No 303
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00047 Score=71.78 Aligned_cols=27 Identities=26% Similarity=0.488 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++++|.-.+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 52 (275)
T PRK13639 25 AEKGEMVALLGPNGAGKSTLFLHFNGIL 52 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455 89999999999999999986433
No 304
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.08 E-value=0.00033 Score=72.65 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+||||||||||+.+|.-.+
T Consensus 36 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 36 LREGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4454 88999999999999999987444
No 305
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.08 E-value=0.00046 Score=71.82 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 48 i~~Ge~~~I~G~nGsGKSTLl~~laGl~ 75 (272)
T PRK14236 48 IPKNRVTAFIGPSGCGKSTLLRCFNRMN 75 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4454 88999999999999999996443
No 306
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00048 Score=71.64 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=22.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++++|.-.+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 28 IPEGSKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4454 89999999999999999997544
No 307
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.08 E-value=0.00059 Score=67.86 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4444 88999999999999999996444
No 308
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.08 E-value=0.00056 Score=68.87 Aligned_cols=25 Identities=20% Similarity=0.394 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4588999999999999999986443
No 309
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.07 E-value=0.00053 Score=67.05 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+++|+|||||||||++++|.-.+
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 488999999999999999996444
No 310
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.07 E-value=0.00049 Score=71.56 Aligned_cols=27 Identities=15% Similarity=0.437 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+||||||||||+.+|.-++
T Consensus 43 i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 43 IPAKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 444 488999999999999999987444
No 311
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.07 E-value=0.00048 Score=70.94 Aligned_cols=28 Identities=21% Similarity=0.540 Sum_probs=23.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHhc
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+| +++|+|||||||||++.+|.-.++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (250)
T PRK14266 26 IPKNSVTALIGPSGCGKSTFIRTLNRMND 54 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4454 889999999999999999975543
No 312
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.00058 Score=69.67 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 444 488999999999999999997444
No 313
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.07 E-value=0.00051 Score=70.77 Aligned_cols=27 Identities=22% Similarity=0.630 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+.+|+|||||||||++.+|.-.+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 27 FEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 444 478999999999999999997544
No 314
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.68 Score=50.59 Aligned_cols=19 Identities=32% Similarity=0.200 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001328 671 NIIMRNTKTINAREEEVEK 689 (1099)
Q Consensus 671 ~~l~~l~~~~~~l~~~l~~ 689 (1099)
.++..++....++...+.+
T Consensus 235 ~~ie~l~~~n~~l~e~i~e 253 (581)
T KOG0995|consen 235 NEIEDLKKTNRELEEMINE 253 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555543
No 315
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.0005 Score=70.11 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 28 INQGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 4455 88999999999999999886433
No 316
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.06 E-value=0.97 Score=52.32 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 787 LNPEITELKEKLITCRTDRIEYETRKAELETNL 819 (1099)
Q Consensus 787 l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l 819 (1099)
.....+++..+++++++++...+.+...|..-|
T Consensus 666 Fa~RCdEYvtQldemqrqL~aAEdEKKTLNsLL 698 (717)
T PF09730_consen 666 FAARCDEYVTQLDEMQRQLAAAEDEKKTLNSLL 698 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334556666666666666666666666666655
No 317
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.06 E-value=0.00041 Score=75.11 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.+++|+|||||||||++.+|.-.
T Consensus 29 Ge~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358899999999999999998743
No 318
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.06 E-value=0.00062 Score=68.60 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=22.2
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 444 488999999999999999986443
No 319
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.06 E-value=0.00057 Score=70.35 Aligned_cols=27 Identities=26% Similarity=0.639 Sum_probs=22.1
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++..|.-.+
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 27 FPERQITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 445 488999999999999999986443
No 320
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.05 E-value=0.00049 Score=73.83 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 27 i~~Ge~~~l~GpsGsGKSTLLr~iaGl~ 54 (353)
T TIGR03265 27 VKKGEFVCLLGPSGCGKTTLLRIIAGLE 54 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 444 589999999999999999987443
No 321
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.05 E-value=0.00055 Score=70.06 Aligned_cols=26 Identities=15% Similarity=0.492 Sum_probs=21.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.+| +.+|+|||||||||++.+|.-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344 8899999999999999998643
No 322
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.05 E-value=0.00052 Score=71.21 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=21.7
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
|.+ .+++|+|||||||||++.+|.-.
T Consensus 39 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 39 VHEKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 445 48999999999999999998633
No 323
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.00059 Score=69.28 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.|| +++|+|||||||||++.+|.-.+
T Consensus 22 i~~Ge~~~i~G~nG~GKStLl~~l~G~~ 49 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLLETIAGFI 49 (235)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 5565 88999999999999999885443
No 324
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.04 E-value=1.2 Score=53.23 Aligned_cols=10 Identities=30% Similarity=0.521 Sum_probs=4.8
Q ss_pred hHHHHHHHHH
Q 001328 559 ETSTKIIRHL 568 (1099)
Q Consensus 559 ~~a~~~~~~l 568 (1099)
..|+.+|.-+
T Consensus 310 eeakdLI~~l 319 (1317)
T KOG0612|consen 310 EEAKDLIEAL 319 (1317)
T ss_pred HHHHHHHHHH
Confidence 4455555543
No 325
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.04 E-value=0.94 Score=51.89 Aligned_cols=38 Identities=5% Similarity=0.045 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 456 NNHKTQRDKMQDERKSLWVKESELCAEIDKLKAEVEKA 493 (1099)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 493 (1099)
.++..+.+......-+....+..++.....|+..+..+
T Consensus 507 kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~ 544 (1243)
T KOG0971|consen 507 KELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQEL 544 (1243)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555444444
No 326
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.04 E-value=0.00037 Score=70.79 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=22.0
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 44 i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3454 88999999999999999986443
No 327
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.04 E-value=0.00046 Score=81.09 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=21.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
|.+| +++|+||||||||||+..|.-
T Consensus 24 i~~Ge~v~LvG~NGsGKSTLLkiL~G 49 (638)
T PRK10636 24 INPGQKVGLVGKNGCGKSTLLALLKN 49 (638)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4454 889999999999999998874
No 328
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.00053 Score=71.61 Aligned_cols=27 Identities=26% Similarity=0.578 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +.+|+||||||||||+.+|.-.+
T Consensus 62 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 62 IPENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4454 88999999999999999997444
No 329
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.00048 Score=71.63 Aligned_cols=26 Identities=35% Similarity=0.713 Sum_probs=21.6
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
|.+ .+++|+||||||||||+.+|.-.
T Consensus 44 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 44 FPARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 444 48889999999999999999643
No 330
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.00035 Score=73.17 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 30 IEDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4454 88999999999999999986444
No 331
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.0006 Score=70.20 Aligned_cols=27 Identities=19% Similarity=0.544 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 27 IYENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 444 488999999999999999997443
No 332
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.00034 Score=73.53 Aligned_cols=27 Identities=33% Similarity=0.730 Sum_probs=22.6
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 34 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 34 FKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455 89999999999999999997544
No 333
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.02 E-value=0.00035 Score=73.16 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=22.9
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~ 57 (287)
T PRK13637 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLL 57 (287)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4455 89999999999999999997555
No 334
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.00068 Score=69.95 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=29.4
Q ss_pred EEEEecc-ccccccccccc----CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 5 QVIIEGF-KSYREQIATEP----FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 5 ~l~l~~f-~sf~~~~~~~~----f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
-|.+.|. ++|.+...+.+ +.+| +++|+|||||||||++.+|.-.+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4566663 23443332211 3354 88999999999999999986544
No 335
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.01 E-value=0.00041 Score=70.02 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3588999999999999999986544
No 336
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.00058 Score=72.16 Aligned_cols=25 Identities=24% Similarity=0.584 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+||||||||||+.+|.-.+
T Consensus 71 Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 71 KSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3488999999999999999996443
No 337
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.01 E-value=0.00042 Score=68.72 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=22.0
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 444 589999999999999999885443
No 338
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.00 E-value=0.00065 Score=70.15 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 27 GSLTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3488999999999999999986444
No 339
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.00059 Score=73.35 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=22.1
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 444 488999999999999999986443
No 340
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.99 E-value=0.00057 Score=80.61 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=21.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
+.+| +++|+||||||||||+.+|.-
T Consensus 26 i~~Ge~v~LvG~NGsGKSTLLriiaG 51 (635)
T PRK11147 26 IEDNERVCLVGRNGAGKSTLMKILNG 51 (635)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4455 889999999999999998763
No 341
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.00041 Score=72.52 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 30 IPRGSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 4454 89999999999999999986444
No 342
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.99 E-value=0.00054 Score=73.88 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 37 i~~Ge~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 37 INNGEFLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 434 589999999999999999987444
No 343
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.00064 Score=72.80 Aligned_cols=25 Identities=20% Similarity=0.394 Sum_probs=21.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHH
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
+.+ .+++|+|||||||||++.+|.-
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaG 54 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHC
Confidence 444 4899999999999999999863
No 344
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.98 E-value=0.0005 Score=67.48 Aligned_cols=27 Identities=33% Similarity=0.702 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4454 88999999999999999996554
No 345
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=96.98 E-value=0.00058 Score=73.27 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 28 Ge~~~llGpsGsGKSTLLr~IaGl~ 52 (353)
T PRK10851 28 GQMVALLGPSGSGKTTLLRIIAGLE 52 (353)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987544
No 346
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.97 E-value=0.00052 Score=69.97 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+||||||||||+.+|.-++
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3444 89999999999999999887555
No 347
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.97 E-value=0.00061 Score=73.22 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
..+++|+|||||||||++.+|.-
T Consensus 31 Ge~~~llGpsGsGKSTLLr~iaG 53 (362)
T TIGR03258 31 GELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999873
No 348
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.97 E-value=0.00064 Score=70.08 Aligned_cols=27 Identities=15% Similarity=0.425 Sum_probs=22.6
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.|| +++|+||||||||||+.+|.-.+
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 31 IRKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 4555 88999999999999999986444
No 349
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.00045 Score=72.19 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 33 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 60 (280)
T PRK13633 33 VKKGEFLVILGRNGSGKSTIAKHMNALL 60 (280)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455 88999999999999999997443
No 350
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.00061 Score=73.17 Aligned_cols=26 Identities=27% Similarity=0.601 Sum_probs=21.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
|.+| +++|+|||||||||++.+|.-.
T Consensus 28 i~~Gei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 28 IPAGEIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4454 8899999999999999988633
No 351
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.00046 Score=72.34 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=22.8
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4454 88999999999999999997555
No 352
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.96 E-value=0.00073 Score=70.07 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +.+|+||||||||||+.+|.-.+
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 34 IEEGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4454 88899999999999999886444
No 353
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=96.96 E-value=0.00067 Score=69.87 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=22.1
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+||||||||||+..|.-.+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 26 LQRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445 488999999999999999886444
No 354
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.96 E-value=0.00047 Score=70.85 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+++|+|||||||||++.+|.-.+
T Consensus 51 e~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999986433
No 355
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.00066 Score=70.80 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334 488999999999999999986544
No 356
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.95 E-value=0.00049 Score=72.40 Aligned_cols=27 Identities=30% Similarity=0.586 Sum_probs=22.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-++
T Consensus 30 i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 30 INQGEFIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3344 89999999999999999998655
No 357
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.95 E-value=0.00047 Score=72.23 Aligned_cols=27 Identities=33% Similarity=0.614 Sum_probs=22.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455 88999999999999999997544
No 358
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.95 E-value=0.00059 Score=69.92 Aligned_cols=27 Identities=22% Similarity=0.577 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.| .+.+|+||||||||||+.+|.-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 445 488899999999999999997543
No 359
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.94 E-value=0.00074 Score=70.62 Aligned_cols=27 Identities=30% Similarity=0.668 Sum_probs=23.0
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 29 i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~ 56 (283)
T PRK13636 29 IKKGEVTAILGGNGAGKSTLFQNLNGIL 56 (283)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455 99999999999999999997555
No 360
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.94 E-value=0.00057 Score=69.42 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999886433
No 361
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=96.93 E-value=0.00053 Score=71.08 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=21.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
|.+| +++|+|||||||||++.+|.-.
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 35 LKSGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455 8899999999999999988633
No 362
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.93 E-value=0.00075 Score=70.30 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~ 57 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4455 89999999999999999986443
No 363
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.92 E-value=0.00065 Score=77.97 Aligned_cols=45 Identities=24% Similarity=0.485 Sum_probs=30.0
Q ss_pred EEEecc-ccccccccccc----CCC-CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 6 VIIEGF-KSYREQIATEP----FSP-QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 6 l~l~~f-~sf~~~~~~~~----f~~-~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
|++.|. ++|.+..++.+ |.+ .+++|+||||||||||+.+|.-.+.
T Consensus 5 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 55 (501)
T PRK10762 5 LQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT 55 (501)
T ss_pred EEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 556653 34544332211 334 4889999999999999999876553
No 364
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.92 E-value=0.0009 Score=66.84 Aligned_cols=25 Identities=20% Similarity=0.515 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+.+|+|||||||||++.+|.-.+
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4588999999999999999996443
No 365
>PRK09039 hypothetical protein; Validated
Probab=96.91 E-value=0.11 Score=55.23 Aligned_cols=9 Identities=44% Similarity=0.505 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 001328 398 EIDDLERVH 406 (1099)
Q Consensus 398 ~~~~l~~~~ 406 (1099)
.+..+...+
T Consensus 173 ~i~~L~~~L 181 (343)
T PRK09039 173 KIADLGRRL 181 (343)
T ss_pred HHHHHHHHH
Confidence 333333333
No 366
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.90 E-value=0.00099 Score=68.71 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+||||||||||+.+|.-.+
T Consensus 27 I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 4454 88999999999999999986555
No 367
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.90 E-value=0.00063 Score=68.72 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++..|.-.+
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4454 88999999999999999887444
No 368
>PF13514 AAA_27: AAA domain
Probab=96.89 E-value=2.4 Score=54.20 Aligned_cols=64 Identities=23% Similarity=0.200 Sum_probs=39.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEE
Q 001328 974 LDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVM 1044 (1099)
Q Consensus 974 ~ee~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~~~~~f~~in~~f~~~f~~lf~gG~a~L~l 1044 (1099)
..++..+..++..+..++..+.-+..-|...+...... ....|...++.+|..|++|.+..|.+
T Consensus 939 ~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~-------~~p~vl~~As~~f~~LT~G~Y~~l~~ 1002 (1111)
T PF13514_consen 939 EQEREEAEAELEELAEEWAALRLAAELLEEAIERYREE-------RQPPVLARASEYFSRLTGGRYSRLRV 1002 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHhCCCCceeee
Confidence 33444444444444444444444444444444444443 34555566999999999999999988
No 369
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.00056 Score=71.31 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=22.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 27 APRNSRIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455 88999999999999999997544
No 370
>PRK11281 hypothetical protein; Provisional
Probab=96.89 E-value=2 Score=53.22 Aligned_cols=36 Identities=6% Similarity=-0.035 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001328 733 KQIISKALENKEKSLADVRTQLDQLEASMAMKQAEM 768 (1099)
Q Consensus 733 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~ 768 (1099)
+..+..++.....+-+..+..+.+...++.++...+
T Consensus 144 La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 144 LAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444444444333
No 371
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.89 E-value=0.00091 Score=69.16 Aligned_cols=27 Identities=41% Similarity=0.658 Sum_probs=22.4
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+.+|+|||||||||++.+|.-.+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444 488999999999999999987554
No 372
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.88 E-value=0.00086 Score=76.90 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 29 Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 29 GDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3488999999999999999987444
No 373
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.88 E-value=0.00076 Score=69.66 Aligned_cols=27 Identities=33% Similarity=0.672 Sum_probs=22.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 28 ANAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4454 78899999999999999887544
No 374
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=96.87 E-value=0.00063 Score=72.04 Aligned_cols=23 Identities=30% Similarity=0.774 Sum_probs=19.1
Q ss_pred CCCCcEE-EEcCCCCChhHHHHHH
Q 001328 23 FSPQVNC-VVGANGSGKTNFFHAI 45 (1099)
Q Consensus 23 f~~~~~~-I~G~NGsGKS~i~~ai 45 (1099)
.+||+++ |+||||||||+|+.-+
T Consensus 505 i~~G~hLLItGPNGCGKSSLfRIL 528 (728)
T KOG0064|consen 505 IEPGMHLLITGPNGCGKSSLFRIL 528 (728)
T ss_pred ecCCceEEEECCCCccHHHHHHHH
Confidence 4578775 9999999999999755
No 375
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.86 E-value=0.00077 Score=77.41 Aligned_cols=27 Identities=26% Similarity=0.577 Sum_probs=22.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+||||||||||+.+|.-.+
T Consensus 34 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 34 LHAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455 89999999999999999987544
No 376
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.86 E-value=0.00097 Score=69.54 Aligned_cols=27 Identities=26% Similarity=0.376 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (277)
T PRK13642 30 ITKGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3444 88999999999999999887554
No 377
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.85 E-value=1.4 Score=50.75 Aligned_cols=252 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred CCCcccCCcceecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001328 645 EGDQVSKKGGMTGGFYDYRRSKLKFMNIIMRNTKTINAREEEVEKLISQLDQKITEHVTEQQKTDAKRAHDKSELEQLKQ 724 (1099)
Q Consensus 645 ~g~~~~~~g~~~g~~~~~~~~~~~~~~~l~~l~~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 724 (1099)
++...+.-+.-.+...........+...+..+..++..+...+..........+.+.+..+..++.++.+.+....+...
T Consensus 307 ~~~~~~~~~~~~~~~~~~~sqkd~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~ 386 (980)
T KOG0980|consen 307 DPEPLDLFEAEPASDPPNASQKDPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENRE 386 (980)
T ss_pred CCCCccccccCcccCCcccccCChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhchhhhhhCCHHHHHHHhhhhHHHHHHHHHHHHH
Q 001328 725 DIANANKQKQIISKALENKEKSL---ADVRTQLDQLEASMAMKQAEMNTDLIDHLSLDEKNLLSRLNPEITELKEKLITC 801 (1099)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 801 (1099)
+-+.++.++..+.....+.++.. ++.+......+.+...+...+. .....-..+-....+...++...
T Consensus 387 e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t---------~l~~~h~~lL~K~~di~kQle~~ 457 (980)
T KOG0980|consen 387 EQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYT---------ELRQEHADLLRKYDDIQKQLESA 457 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 802 RTDRIEYETRKAELETNLTTNLMRRKQELEALISSAENDVMLSEAESKKQELADAKSFVEDARQELKRVSDSIVQLTKEL 881 (1099)
Q Consensus 802 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 881 (1099)
+..+.........+...+ ..+.+....++...++.... ++.++.++..+..++..++..+....+.......++
T Consensus 458 ~~s~~~~~~~~~~L~d~l-e~~~~~~~~~~~K~e~~~~~-----le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l 531 (980)
T KOG0980|consen 458 EQSIDDVEEENTNLNDQL-EELQRAAGRAETKTESQAKA-----LESLRQELALLLIELEELQRTLSNLAQSHNNQLAQL 531 (980)
T ss_pred HHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 882 NKIKDEKTKLKTLEDNYERKLQDDARELEQ 911 (1099)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1099)
.....+...+-..+..-..+...+..+.+.
T Consensus 532 ~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~ 561 (980)
T KOG0980|consen 532 EDLLKQKDRLAAELVAREEEREALRLEAER 561 (980)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
No 378
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.00082 Score=79.01 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+++|+|||||||||++.+|.-.+
T Consensus 339 e~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 339 SRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 488999999999999999987443
No 379
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.85 E-value=0.00094 Score=70.07 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (290)
T PRK13634 30 IPSGSYVAIIGHTGSGKSTLLQHLNGLL 57 (290)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3444 89999999999999999987544
No 380
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.85 E-value=0.00095 Score=77.55 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=22.0
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
|.+| +++|+||||||||||+.+|.-.
T Consensus 28 i~~Ge~~~liG~NGsGKSTLl~~i~G~ 54 (552)
T TIGR03719 28 FFPGAKIGVLGLNGAGKSTLLRIMAGV 54 (552)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455 8999999999999999998733
No 381
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.84 E-value=0.0009 Score=77.45 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 24 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 24 FGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4454 89999999999999999987443
No 382
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.0025 Score=62.00 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=50.8
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhcccccc--cchhhhhhhhccCCC---CcceEEEEEEEEeCCCCCCCCCCccEEE
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLSDIFQN--LRSEDRHALLHEGAG---HQVLSAFVEIVFDNSDNRIPVDKEEVRL 98 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~--~~~~~~~~~i~~g~~---~~~~~a~v~~~f~~~~~~~~~~~~~~~i 98 (1099)
.+|+|+|.|++||||||+++.|.-.+-...+. +.| .++++... -|...-.|..+|.+. .-|| -++|
T Consensus 23 ~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lng----r~L~Ds~k~i~lp~~~RriGYVFQDA-RLFp----H~tV 93 (352)
T COG4148 23 ARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNG----RVLVDAEKGIFLPPEKRRIGYVFQDA-RLFP----HYTV 93 (352)
T ss_pred CCceEEEecCCCCChhhHHHHHhccCCccccEEEECC----EEeecccCCcccChhhheeeeEeecc-cccc----ceEE
Confidence 46999999999999999999998666442221 222 12222221 133334566777543 2222 2356
Q ss_pred EEEeecCCCeEEeCCeecCHHHHHHHHHHcCCC
Q 001328 99 RRTIGLKKDEYFLDGKHITKTEVMNLLESAGFS 131 (1099)
Q Consensus 99 ~R~~~~~~~~~~in~~~~~~~~~~~l~~~~g~~ 131 (1099)
++.+.-|- ...+..++..+...+||+
T Consensus 94 rgNL~YG~-------~~~~~~~fd~iv~lLGI~ 119 (352)
T COG4148 94 RGNLRYGM-------WKSMRAQFDQLVALLGIE 119 (352)
T ss_pred ecchhhhh-------cccchHhHHHHHHHhCcH
Confidence 55542211 112455666666666766
No 383
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.82 E-value=0.00087 Score=79.09 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+||||||||||+.+|.-.+
T Consensus 342 i~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 369 (635)
T PRK11147 342 VQRGDKIALIGPNGCGKTTLLKLMLGQL 369 (635)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3454 88999999999999999887443
No 384
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.80 E-value=0.00096 Score=76.50 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
+.+++|+|||||||||++.+|.-
T Consensus 286 Ge~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 286 GEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 34899999999999999999864
No 385
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.79 E-value=0.00071 Score=77.94 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 313 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFGVD 313 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444 88999999999999999997544
No 386
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.79 E-value=0.00078 Score=71.35 Aligned_cols=27 Identities=22% Similarity=0.543 Sum_probs=22.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+||||||||||+.+|.-.+
T Consensus 49 i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 49 FEKNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4454 88999999999999999997554
No 387
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.78 E-value=0.00098 Score=72.09 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 45 Ge~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 45 GEIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3588999999999999999987443
No 388
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.78 E-value=1.5 Score=50.28 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHh
Q 001328 951 ELLKMLHRCNEQL 963 (1099)
Q Consensus 951 ~l~~~l~~l~~~l 963 (1099)
-+..+++.+...+
T Consensus 1096 ~l~~qin~l~na~ 1108 (1243)
T KOG0971|consen 1096 LLLQQINALRNAI 1108 (1243)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 389
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.00099 Score=66.64 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=22.4
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+.+++|+|||||||||++.+|.-.+
T Consensus 21 i~~e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 21 LNEEVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred EcceeEEEECCCCCCHHHHHHHHhCCC
Confidence 445788999999999999999886443
No 390
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.77 E-value=0.00086 Score=65.11 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.4
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
.+.+|+||||||||||+.+|.-.++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4778999999999999999966554
No 391
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.76 E-value=0.00086 Score=71.77 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 19 Gei~~l~G~sGsGKSTLLr~L~Gl~ 43 (363)
T TIGR01186 19 GEIFVIMGLSGSGKSTTVRMLNRLI 43 (363)
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3589999999999999999887444
No 392
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.75 E-value=0.0011 Score=76.65 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=28.9
Q ss_pred EEEeccc-cccccccccc----CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 6 VIIEGFK-SYREQIATEP----FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 6 l~l~~f~-sf~~~~~~~~----f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|++.|+. +|.+..++.+ |.+ .+++|+|||||||||++.+|.-.+
T Consensus 320 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 369 (530)
T PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL 369 (530)
T ss_pred EEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5666643 4443322211 334 489999999999999999987433
No 393
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.74 E-value=0.0017 Score=56.97 Aligned_cols=44 Identities=14% Similarity=0.417 Sum_probs=32.2
Q ss_pred EEEEecccccccccccccCC------CC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 5 QVIIEGFKSYREQIATEPFS------PQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 5 ~l~l~~f~sf~~~~~~~~f~------~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+|.+.|...|.+.+-. -|+ .| ..++.||+|+||||++.-+...=
T Consensus 2 sirv~~in~~yg~~q~-lfdi~l~~~~getlvllgpsgagkssllr~lnlle 52 (242)
T COG4161 2 SIQLNGINCFYGAHQA-LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred ceEEcccccccccchh-eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHh
Confidence 5788888888776533 233 34 44688999999999999887543
No 394
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=96.72 E-value=0.0012 Score=70.43 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +.+|+||||||||||+.+|.-.+
T Consensus 30 i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 30 LTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 3344 88999999999999999986444
No 395
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=96.71 E-value=0.0013 Score=75.66 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 24 i~~Ge~~~liG~nGsGKSTLl~~i~G~~ 51 (500)
T TIGR02633 24 VRPGECVGLCGENGAGKSTLMKILSGVY 51 (500)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455 89999999999999999987433
No 396
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.71 E-value=0.001 Score=59.77 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=21.0
Q ss_pred CCcE-EEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVN-CVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~-~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.|-| +|+|.|||||||+...|.-+..+
T Consensus 38 ~~QTlaiIG~NGSGKSTLakMlaGmi~P 65 (267)
T COG4167 38 EGQTLAIIGENGSGKSTLAKMLAGMIEP 65 (267)
T ss_pred CCcEEEEEccCCCcHhHHHHHHhcccCC
Confidence 4444 69999999999999887755544
No 397
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.70 E-value=0.0013 Score=75.89 Aligned_cols=27 Identities=22% Similarity=0.568 Sum_probs=22.6
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+||||||||||+.+|.-.+
T Consensus 28 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 28 VYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 4455 89999999999999999986444
No 398
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.70 E-value=1.1 Score=47.62 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 165 TRVYEERRRESLKIMQDTGNKRQQIIQVVKY--------L----DERLKELDEEKEELRKYQQLDKQRKSLEYTI 227 (1099)
Q Consensus 165 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~--------l----~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 227 (1099)
+..|..--++..+.+.+.+.....++..+.. + ......+..+....+.|..+..+..|++|..
T Consensus 70 Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~ 144 (325)
T PF08317_consen 70 LELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRM 144 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555444221 1 1222334455555555666666666666543
No 399
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.69 E-value=0.0011 Score=66.66 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+ .+++|+|||||||||++.+|.-.+
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444 489999999999999999987444
No 400
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.68 E-value=0.0016 Score=75.19 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.7
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 23 IEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 4454 88999999999999999997554
No 401
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.68 E-value=1.3 Score=48.01 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 173 RESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEK 207 (1099)
Q Consensus 173 ~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 207 (1099)
..+...+......+.-++..+..+-..+..|...-
T Consensus 100 ~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sE 134 (570)
T COG4477 100 NKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESE 134 (570)
T ss_pred HHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666655555443
No 402
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.67 E-value=0.0013 Score=76.40 Aligned_cols=27 Identities=30% Similarity=0.587 Sum_probs=22.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+||||||||||+.+|.-.+
T Consensus 347 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 374 (556)
T PRK11819 347 LPPGGIVGIIGPNGAGKSTLFKMITGQE 374 (556)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344 489999999999999999997444
No 403
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.66 E-value=0.001 Score=69.71 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.2
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+++|+|||||||||++.+|.-.+
T Consensus 33 e~v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 33 SYTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 489999999999999999997554
No 404
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.66 E-value=0.0014 Score=75.23 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=28.4
Q ss_pred EEEecccc--cccccccccCCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 6 VIIEGFKS--YREQIATEPFSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 6 l~l~~f~s--f~~~~~~~~f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+.|+.. |.+.++. +.+| +++|+|||||||||++.+|.-.+
T Consensus 269 l~~~~l~~~~l~~isl~--i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~ 313 (510)
T PRK15439 269 LTVEDLTGEGFRNISLE--VRAGEILGLAGVVGAGRTELAETLYGLR 313 (510)
T ss_pred EEEeCCCCCCccceeEE--EcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 45555432 3333322 4454 88999999999999999987443
No 405
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.65 E-value=0.001 Score=71.62 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 50 Gei~~I~G~nGsGKSTLlr~L~Gl~ 74 (382)
T TIGR03415 50 GEICVLMGLSGSGKSSLLRAVNGLN 74 (382)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3488999999999999999986443
No 406
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.64 E-value=0.0016 Score=75.75 Aligned_cols=26 Identities=35% Similarity=0.649 Sum_probs=21.6
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
|.+| +++|+|||||||||++.+|.-.
T Consensus 345 i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 371 (552)
T TIGR03719 345 LPPGGIVGVIGPNGAGKSTLFRMITGQ 371 (552)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3444 8999999999999999998643
No 407
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.63 E-value=0.0011 Score=68.30 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.2
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.| .+++|+|||||||||++.+|.-.+
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 445 488999999999999999986443
No 408
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.61 E-value=0.0015 Score=63.27 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.++.+|+|||||||||++.+|.-.+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5688999999999999999986554
No 409
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.61 E-value=0.0015 Score=69.48 Aligned_cols=27 Identities=33% Similarity=0.331 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 30 VKQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3344 88999999999999999986444
No 410
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.60 E-value=0.0012 Score=70.11 Aligned_cols=24 Identities=25% Similarity=0.667 Sum_probs=20.8
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHH
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
+.+ .+++|+||||||||||+.+|.
T Consensus 105 I~~Ge~v~IvG~~GsGKSTLl~~L~ 129 (329)
T PRK14257 105 IKRNKVTAFIGPSGCGKSTFLRNLN 129 (329)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344 488999999999999999985
No 411
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.60 E-value=0.0019 Score=71.21 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=21.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
|.+| +.+|+||||||||||+.+|.-.
T Consensus 47 I~~GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 47 VPEGEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred EeCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3344 8899999999999999998633
No 412
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.59 E-value=0.0015 Score=75.00 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=22.6
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 27 CRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455 88999999999999999987544
No 413
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.59 E-value=0.002 Score=74.90 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=22.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+||||||||||+.+|.-.+
T Consensus 30 i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 30 FFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4454 88999999999999999987443
No 414
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.58 E-value=0.0017 Score=74.76 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+|||||||||++.+|.-.+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (506)
T PRK13549 28 VRAGEIVSLCGENGAGKSTLMKVLSGVY 55 (506)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455 88999999999999999987544
No 415
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.57 E-value=1.4 Score=47.00 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=8.3
Q ss_pred HHHHHHHcCCCC
Q 001328 121 VMNLLESAGFSR 132 (1099)
Q Consensus 121 ~~~l~~~~g~~~ 132 (1099)
+.++|..+|+.+
T Consensus 16 L~~FL~~~~I~F 27 (325)
T PF08317_consen 16 LQDFLNMTGIRF 27 (325)
T ss_pred HHHHHHHhCcee
Confidence 566777777764
No 416
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.56 E-value=0.0017 Score=63.52 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.|+.+|+||+||||||++.++...+
T Consensus 1 ~GlilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3899999999999999999875444
No 417
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.56 E-value=0.0017 Score=62.75 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+.+|+||+||||||++++|.-.++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 36789999999999999999776653
No 418
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.54 E-value=0.0015 Score=64.60 Aligned_cols=21 Identities=24% Similarity=0.582 Sum_probs=19.5
Q ss_pred CcEEEEcCCCCChhHHHHHHH
Q 001328 26 QVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
++.+|+||||+||||++.+|.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 578999999999999999996
No 419
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.53 E-value=1.8 Score=47.95 Aligned_cols=13 Identities=23% Similarity=0.092 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHHH
Q 001328 948 GVKELLKMLHRCN 960 (1099)
Q Consensus 948 ~~~~l~~~l~~l~ 960 (1099)
+.++|+-.|.+++
T Consensus 933 e~EELrlDl~dlK 945 (961)
T KOG4673|consen 933 ELEELRLDLVDLK 945 (961)
T ss_pred HHHHHHhhHHHHH
Confidence 3444555555444
No 420
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.52 E-value=1.4 Score=46.45 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=25.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001328 711 KRAHDKSELEQLKQDIANANKQKQIISKALENKEKSLADVRTQLDQLEASMAMKQAEMN 769 (1099)
Q Consensus 711 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~ 769 (1099)
+...+......+..-...++......-..+..+...+...+.++..+++..+.+...+.
T Consensus 303 k~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 303 KWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333333333333333333333333334444444444455555555555555554443
No 421
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.51 E-value=0.0018 Score=66.30 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.8
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
.|.+.+|.|||||||||++..|.-.|.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999877774
No 422
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.51 E-value=0.0014 Score=75.22 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+||||||||||+.+|.-.+
T Consensus 271 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 298 (491)
T PRK10982 271 LHKGEILGIAGLVGAKRTDIVETLFGIR 298 (491)
T ss_pred EeCCcEEEEecCCCCCHHHHHHHHcCCC
Confidence 4454 99999999999999999986443
No 423
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.50 E-value=0.0018 Score=68.99 Aligned_cols=27 Identities=30% Similarity=0.376 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|+||||||||+.+|.-.+
T Consensus 39 i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 39 LRAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3444 88999999999999999997444
No 424
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.50 E-value=0.0021 Score=64.54 Aligned_cols=21 Identities=29% Similarity=0.581 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCChhHHH-HHH
Q 001328 25 PQVNCVVGANGSGKTNFF-HAI 45 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~-~ai 45 (1099)
..+++|+||||||||||+ ..|
T Consensus 21 Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 21 NKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 358899999999999995 444
No 425
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.50 E-value=0.0023 Score=60.98 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+.+|+|||||||||++.+|.-.++.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 357899999999999999999877754
No 426
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.50 E-value=0.0017 Score=69.13 Aligned_cols=25 Identities=28% Similarity=0.603 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 31 Gei~gIiG~sGaGKSTLlr~I~gl~ 55 (343)
T TIGR02314 31 GQIYGVIGASGAGKSTLIRCVNLLE 55 (343)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3488999999999999999987444
No 427
>PLN03073 ABC transporter F family; Provisional
Probab=96.49 E-value=0.002 Score=76.00 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=29.2
Q ss_pred eEEEEecc-ccccccccccc----CCCC-cEEEEcCCCCChhHHHHHHH
Q 001328 4 KQVIIEGF-KSYREQIATEP----FSPQ-VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 4 ~~l~l~~f-~sf~~~~~~~~----f~~~-~~~I~G~NGsGKS~i~~ai~ 46 (1099)
+-|.+.|| ++|.+...+.+ +.+| ..+|+|||||||||++.+|.
T Consensus 176 ~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~ 224 (718)
T PLN03073 176 KDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMA 224 (718)
T ss_pred eeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 34666664 34544332211 3455 88999999999999999886
No 428
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=96.49 E-value=0.0017 Score=70.18 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=22.1
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 20 i~~Gei~~l~G~nGsGKSTLl~~iaGl~ 47 (354)
T TIGR02142 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLT 47 (354)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455 489999999999999999886433
No 429
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.48 E-value=0.0015 Score=77.98 Aligned_cols=14 Identities=14% Similarity=0.377 Sum_probs=7.0
Q ss_pred ChhHHHHHH-HHHhc
Q 001328 37 GKTNFFHAI-RFVLS 50 (1099)
Q Consensus 37 GKS~i~~ai-~~~Lg 50 (1099)
-|+.+.+++ .|+=+
T Consensus 4 ~~~~l~~~Lv~Wv~t 18 (713)
T PF05622_consen 4 DKMELCDSLVTWVQT 18 (713)
T ss_dssp ---HHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHH
Confidence 467788876 55543
No 430
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.47 E-value=0.0024 Score=57.39 Aligned_cols=29 Identities=31% Similarity=0.588 Sum_probs=24.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcccc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSDIF 53 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~ 53 (1099)
..+..|+|.+||||||++.||.|.=.++.
T Consensus 32 GdVisIIGsSGSGKSTfLRCiN~LE~P~~ 60 (256)
T COG4598 32 GDVISIIGSSGSGKSTFLRCINFLEKPSA 60 (256)
T ss_pred CCEEEEecCCCCchhHHHHHHHhhcCCCC
Confidence 45888999999999999999997664433
No 431
>PLN03073 ABC transporter F family; Provisional
Probab=96.46 E-value=0.0024 Score=75.43 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+||||||||||+.+|.-.+
T Consensus 532 i~~Ge~i~LvG~NGsGKSTLLk~L~Gll 559 (718)
T PLN03073 532 IDLDSRIAMVGPNGIGKSTILKLISGEL 559 (718)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4454 88999999999999999987544
No 432
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.44 E-value=0.0028 Score=58.08 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
..+.++.||+|||||||++-+.-....
T Consensus 31 ge~vv~lGpSGcGKTTLLnl~AGf~~P 57 (259)
T COG4525 31 GELVVVLGPSGCGKTTLLNLIAGFVTP 57 (259)
T ss_pred CCEEEEEcCCCccHHHHHHHHhcCcCc
Confidence 457789999999999999988655543
No 433
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.44 E-value=0.0038 Score=66.47 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=21.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
..++++.|.||+|||||+..+.-++
T Consensus 30 GeIHaLLGENGAGKSTLm~iL~G~~ 54 (501)
T COG3845 30 GEIHALLGENGAGKSTLMKILFGLY 54 (501)
T ss_pred CcEEEEeccCCCCHHHHHHHHhCcc
Confidence 4599999999999999998765444
No 434
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.44 E-value=2.2 Score=47.72 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=9.9
Q ss_pred HHHHHhcChHHHHHH
Q 001328 157 DLLKEIGGTRVYEER 171 (1099)
Q Consensus 157 ~~lee~~g~~~~~~~ 171 (1099)
.++.++-.|..++-.
T Consensus 82 KL~~EaEKIk~WKv~ 96 (786)
T PF05483_consen 82 KLYKEAEKIKKWKVQ 96 (786)
T ss_pred HHHHHHHHHHHHHhh
Confidence 467777777776643
No 435
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.43 E-value=0.0029 Score=70.88 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhccc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSDI 52 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~~ 52 (1099)
+.-.+|+||||+||||+|..|.-.+++.
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~ 375 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPL 375 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccC
Confidence 3467899999999999999998778764
No 436
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.43 E-value=0.0022 Score=63.67 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.3
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+|.|||||||||+...|.-.|.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 468999999999999999987774
No 437
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=96.42 E-value=0.0027 Score=73.09 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 286 Ge~~~l~G~NGsGKSTLl~~l~G~~ 310 (500)
T TIGR02633 286 GEILGVAGLVGAGRTELVQALFGAY 310 (500)
T ss_pred CcEEEEeCCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999987444
No 438
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.41 E-value=0.0025 Score=73.16 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 275 i~~Ge~~~liG~NGsGKSTLl~~l~G~~ 302 (501)
T PRK10762 275 LRKGEILGVSGLMGAGRTELMKVLYGAL 302 (501)
T ss_pred EcCCcEEEEecCCCCCHHHHHHHHhCCC
Confidence 4454 88999999999999999886444
No 439
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.41 E-value=0.0022 Score=59.91 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=21.9
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
...+..|+|.|||||||++.+|.--+
T Consensus 31 ~g~FvtViGsNGAGKSTlln~iaG~l 56 (263)
T COG1101 31 EGDFVTVIGSNGAGKSTLLNAIAGDL 56 (263)
T ss_pred CCceEEEEcCCCccHHHHHHHhhCcc
Confidence 35678899999999999999996444
No 440
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.41 E-value=0.0022 Score=69.19 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=20.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.+++|+|||||||||++.+|.-.
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999988633
No 441
>PRK13409 putative ATPase RIL; Provisional
Probab=96.39 E-value=0.0022 Score=74.13 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=23.8
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+| +++|+|||||||||++..|.-.+-.
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p 125 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIP 125 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 4455 8899999999999999998766543
No 442
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.39 E-value=0.002 Score=70.00 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+++|+|||||||||++.+|.-.+
T Consensus 55 ei~~LvG~NGsGKSTLLr~I~Gl~ 78 (400)
T PRK10070 55 EIFVIMGLSGSGKSTMVRLLNRLI 78 (400)
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 488999999999999999987443
No 443
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.35 E-value=0.002 Score=74.43 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=22.6
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+||||||||||+.+|.-.+
T Consensus 307 i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~ 334 (520)
T TIGR03269 307 VKEGEIFGIVGTSGAGKTTLSKIIAGVL 334 (520)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444 89999999999999999997555
No 444
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.35 E-value=0.0026 Score=63.04 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+.+|+|||||||||++.+|.-.|.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45778999999999999999987665
No 445
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.35 E-value=0.0018 Score=62.90 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=19.6
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+++++||||+||||.+..+.-.+
T Consensus 51 ~ivgflGaNGAGKSTtLKmLTGll 74 (325)
T COG4586 51 EIVGFLGANGAGKSTTLKMLTGLL 74 (325)
T ss_pred cEEEEEcCCCCcchhhHHHHhCcc
Confidence 478899999999999998765333
No 446
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.33 E-value=0.0024 Score=68.15 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.|+.+|+|||||||||++.|+.-.+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4899999999999999999985444
No 447
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.32 E-value=0.0035 Score=70.30 Aligned_cols=44 Identities=25% Similarity=0.468 Sum_probs=28.8
Q ss_pred EEEecc-ccccccccccc----CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 6 VIIEGF-KSYREQIATEP----FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 6 l~l~~f-~sf~~~~~~~~----f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+.|+ ++|.+...++. |.+ .-.+|||+|||||||+|..|.-.+
T Consensus 4 i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 4 ITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred EEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 344442 35655544321 334 466899999999999999887554
No 448
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.30 E-value=0.0023 Score=73.48 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+++|+|||||||||++.+|.-.+
T Consensus 280 e~~~iiG~NGsGKSTLlk~l~G~~ 303 (501)
T PRK11288 280 EIVGLFGLVGAGRSELMKLLYGAT 303 (501)
T ss_pred cEEEEEcCCCCCHHHHHHHHcCCC
Confidence 489999999999999999987443
No 449
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.30 E-value=0.0029 Score=72.52 Aligned_cols=27 Identities=22% Similarity=0.610 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+| +++|+||||||||||+.+|.-.+
T Consensus 21 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 48 (491)
T PRK10982 21 VRPHSIHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 4454 88999999999999999987544
No 450
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=96.30 E-value=0.0031 Score=67.13 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=27.7
Q ss_pred EEEEecccccccccccccCC-CCcE-------EEEcCCCCChhHHHHHHHH
Q 001328 5 QVIIEGFKSYREQIATEPFS-PQVN-------CVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 5 ~l~l~~f~sf~~~~~~~~f~-~~~~-------~I~G~NGsGKS~i~~ai~~ 47 (1099)
-|.+.+|--+.+...+ +. ..++ ++|||||+||||+|.||.-
T Consensus 80 Di~~~~fdLa~G~k~L--L~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKIL--LNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ceeeeeeeeeecchhh--hcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 4666677654333333 22 2233 6999999999999999975
No 451
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.30 E-value=0.0025 Score=73.35 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 285 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 312 (506)
T PRK13549 285 LRRGEILGIAGLVGAGRTELVQCLFGAY 312 (506)
T ss_pred EcCCcEEEEeCCCCCCHHHHHHHHhCCC
Confidence 3344 88999999999999999996443
No 452
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.29 E-value=0.0027 Score=58.04 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=21.7
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHH
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
+.+.+++++||+|+|||||++++.-
T Consensus 33 l~~k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 33 LKGKTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp HTTSEEEEECSTTSSHHHHHHHHHT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHh
Confidence 4568999999999999999998753
No 453
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=96.28 E-value=0.0023 Score=74.06 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+||||||||||+.+|.-.+
T Consensus 35 Ge~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 35 GETLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3589999999999999999987544
No 454
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.27 E-value=1.1 Score=42.81 Aligned_cols=43 Identities=9% Similarity=0.132 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 721 QLKQDIANANKQKQIISKALENKEKSLADVRTQLDQLEASMAM 763 (1099)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~ 763 (1099)
....++..+...+...+.........+.....++..+...+..
T Consensus 65 ~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~ 107 (194)
T PF15619_consen 65 RHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKH 107 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444433
No 455
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.26 E-value=0.81 Score=40.98 Aligned_cols=68 Identities=9% Similarity=0.192 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 695 DQKITEHVTEQQKTDAKRAHDKSELEQLKQDIANANKQKQIISKALENKEKSLADVRTQLDQLEASMA 762 (1099)
Q Consensus 695 ~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~ 762 (1099)
...+..+...+.........++..+..--..+......+..++.++..+...+..+..........+.
T Consensus 23 ~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 23 EEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344333333333333333222222333333444444444444444444444444433333
No 456
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=96.23 E-value=0.0027 Score=67.64 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+.+|+||||||||||+.+|.-.+
T Consensus 48 e~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 48 ETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 488999999999999999986333
No 457
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.23 E-value=3.5 Score=48.08 Aligned_cols=12 Identities=8% Similarity=-0.081 Sum_probs=8.4
Q ss_pred ceEEEEec-CCCc
Q 001328 1075 GVKVKACT-SVKM 1086 (1099)
Q Consensus 1075 Gi~i~~~p-pgk~ 1086 (1099)
+|++.++| ||+.
T Consensus 421 ~v~f~~~~n~g~~ 433 (563)
T TIGR00634 421 QVEFLFSANTGEP 433 (563)
T ss_pred EEEEEEecCCCCC
Confidence 47888876 6754
No 458
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.22 E-value=0.0035 Score=61.83 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=22.0
Q ss_pred cCCCCcEEEEcCCCCChhHHHHHHH
Q 001328 22 PFSPQVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 22 ~f~~~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
++.+.+.+|+||+|||||||+.++.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMR 34 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHH
Confidence 4667788999999999999999985
No 459
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.20 E-value=0.0037 Score=61.63 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.2
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+|+||+||||||+..+|.-.|+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 468999999999999999977773
No 460
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.19 E-value=1.7 Score=44.14 Aligned_cols=10 Identities=10% Similarity=0.145 Sum_probs=4.1
Q ss_pred CCHHHHHHHH
Q 001328 150 MKDSERLDLL 159 (1099)
Q Consensus 150 ~~~~~~~~~l 159 (1099)
.+|......|
T Consensus 35 ls~~~~~~~l 44 (306)
T PF04849_consen 35 LSPEQIEETL 44 (306)
T ss_pred CCHHHHHHHH
Confidence 3444443333
No 461
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.17 E-value=0.75 Score=55.16 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCChhHHHHHHHHH
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
.+.+|+||||+||||++..|...
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 48899999999999999999644
No 462
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.003 Score=67.89 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.-.+|+|+||||||||+.+|--.+
T Consensus 379 ekVaIvG~nGsGKSTilr~LlrF~ 402 (591)
T KOG0057|consen 379 EKVAIVGSNGSGKSTILRLLLRFF 402 (591)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999985444
No 463
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=96.14 E-value=0.0014 Score=60.26 Aligned_cols=39 Identities=31% Similarity=0.519 Sum_probs=27.3
Q ss_pred EEEec-ccccccccccccCC-----CCcEEEEcCCCCChhHHHHH
Q 001328 6 VIIEG-FKSYREQIATEPFS-----PQVNCVVGANGSGKTNFFHA 44 (1099)
Q Consensus 6 l~l~~-f~sf~~~~~~~~f~-----~~~~~I~G~NGsGKS~i~~a 44 (1099)
|...| -|+|..+.++..++ ..+..+.||||+||||.|-.
T Consensus 5 L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fym 49 (243)
T COG1137 5 LVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYM 49 (243)
T ss_pred EEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEE
Confidence 45555 46888776553222 34778999999999998743
No 464
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=96.14 E-value=0.0032 Score=72.93 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+||||||||||+.+|.-.+
T Consensus 312 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 336 (529)
T PRK15134 312 GETLGLVGESGSGKSTTGLALLRLI 336 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcC
Confidence 3488999999999999999997443
No 465
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.14 E-value=0.0038 Score=60.51 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.1
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
.+.+|+|||||||||++..|.-.++
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 4789999999999999999975443
No 466
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.14 E-value=0.0041 Score=60.19 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=18.6
Q ss_pred cEEEEcCCCCChhHHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
+.+|+||||+||||++.+|..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999973
No 467
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.14 E-value=0.0014 Score=78.13 Aligned_cols=16 Identities=25% Similarity=0.219 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHhcChH
Q 001328 151 KDSERLDLLKEIGGTR 166 (1099)
Q Consensus 151 ~~~~~~~~lee~~g~~ 166 (1099)
.+.+...++.=+.|..
T Consensus 107 d~~El~kLL~LlLgcA 122 (713)
T PF05622_consen 107 DPEELKKLLQLLLGCA 122 (713)
T ss_dssp -HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 4455555554444443
No 468
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.13 E-value=0.0036 Score=60.32 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=21.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
...+|+|+|||||||++.-|.-++-+
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi~~P 79 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGIYKP 79 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCccCC
Confidence 45689999999999999988766644
No 469
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.13 E-value=0.0037 Score=61.95 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
+.+.+|+|||||||||++.+|.
T Consensus 30 ~~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 30 RQILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 4689999999999999999995
No 470
>PRK13409 putative ATPase RIL; Provisional
Probab=96.13 E-value=0.0041 Score=71.95 Aligned_cols=24 Identities=46% Similarity=0.606 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+++|+||||||||||+.+|.-.+
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~ 389 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVL 389 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999987444
No 471
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.12 E-value=4.1 Score=47.82 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 331 RSLLEEIDDSSKELDKANTLYENKCIEEKKITKDIMEREKQLSIL 375 (1099)
Q Consensus 331 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 375 (1099)
..++..+..++.++++.-..+..++.+++.++.++..++.+...+
T Consensus 180 Adle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~ 224 (1195)
T KOG4643|consen 180 ADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEF 224 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333334444444444444333333
No 472
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.0051 Score=54.94 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
..+-+|||.+||||||++.||.--|..
T Consensus 32 GeVLgiVGESGSGKtTLL~~is~rl~p 58 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISGRLTP 58 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHHhcccCC
Confidence 346789999999999999999876654
No 473
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.10 E-value=0.0043 Score=57.77 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=24.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
++..+|+||+||||||++.+|.+.++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 457889999999999999999988866
No 474
>PLN03211 ABC transporter G-25; Provisional
Probab=96.09 E-value=0.0036 Score=73.48 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=21.9
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.|| +++|+|||||||||++++|.-.
T Consensus 91 i~~Ge~~aI~GpnGaGKSTLL~iLaG~ 117 (659)
T PLN03211 91 ASPGEILAVLGPSGSGKSTLLNALAGR 117 (659)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCC
Confidence 3455 9999999999999999998643
No 475
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.08 E-value=0.0043 Score=56.30 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.0
Q ss_pred cEEEEcCCCCChhHHHHHHHHHh
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+|+||+|||||||+..|.-.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 46899999999999999997654
No 476
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.07 E-value=0.0043 Score=61.31 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.|+.+|+||.||||||.+.|+.--+.
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence 369999999999999999999875553
No 477
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=96.04 E-value=0.0048 Score=67.20 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=31.2
Q ss_pred EEEec-ccccccccccc--cC---CCCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 6 VIIEG-FKSYREQIATE--PF---SPQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 6 l~l~~-f~sf~~~~~~~--~f---~~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
|++.| -|+|.+..... +| ...+++++|.||||||||+..|.-++.
T Consensus 9 l~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~ 59 (500)
T COG1129 9 LELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP 59 (500)
T ss_pred eeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc
Confidence 45666 56776644221 12 245999999999999999988875553
No 478
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=96.03 E-value=0.0042 Score=66.07 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+||||||||||+.+|.-.+
T Consensus 41 Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 41 GKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Confidence 4588999999999999999986444
No 479
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.99 E-value=0.0056 Score=72.32 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=29.3
Q ss_pred EEEEecc--ccccccccccc----CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 5 QVIIEGF--KSYREQIATEP----FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 5 ~l~l~~f--~sf~~~~~~~~----f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.|.+.|. .+|.+..+..+ ++| ..++||||+|||||||+..|.-.+
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4677774 34433322211 334 577899999999999999885443
No 480
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.99 E-value=0.0051 Score=62.00 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=23.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|-+.+|.|||||||||++..|.-.|..
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 458889999999999999999877754
No 481
>PF13245 AAA_19: Part of AAA domain
Probab=95.98 E-value=0.0077 Score=47.48 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCChh-HHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKT-NFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS-~i~~ai~~~L 49 (1099)
+++.+|.||-||||| +++.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 678889999999999 7777777766
No 482
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=0.0019 Score=56.85 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=0.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+.+|-|||||||||+...+..-|
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~ 26 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPL 26 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhh
No 483
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.0041 Score=73.20 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=0.0
Q ss_pred cccccccccccccCCCC-cEEEEcCCCCChhHHHHHH
Q 001328 10 GFKSYREQIATEPFSPQ-VNCVVGANGSGKTNFFHAI 45 (1099)
Q Consensus 10 ~f~sf~~~~~~~~f~~~-~~~I~G~NGsGKS~i~~ai 45 (1099)
+..-+.+.++. +.+| +++|+||||||||||+.+|
T Consensus 336 ~~~~l~~vs~~--i~~Ge~~~lvG~nGsGKSTLlk~i 370 (623)
T PRK10261 336 EVHAVEKVSFD--LWPGETLSLVGESGSGKSTTGRAL 370 (623)
T ss_pred ceEEEeeeEeE--EcCCCEEEEECCCCCCHHHHHHHH
No 484
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.96 E-value=0.0054 Score=64.38 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.|.+.+|+|||||||||++..|...+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
No 485
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.96 E-value=1.2 Score=53.55 Aligned_cols=231 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred cccccccccccCCCC--cEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEEEEeCCCCCC
Q 001328 12 KSYREQIATEPFSPQ--VNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEIVFDNSDNRI 89 (1099)
Q Consensus 12 ~sf~~~~~~~~f~~~--~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~~f~~~~~~~ 89 (1099)
..|....+. ++++ +.+|+|||++||||+|..|..+- -+-..|..-|...+..--.|++
T Consensus 314 ~~~Vpndi~--l~~~~~~~iITGpN~gGKTt~lktigl~~-------------~maq~G~~vpa~~~~~i~~~~~----- 373 (782)
T PRK00409 314 EKVVPKDIS--LGFDKTVLVITGPNTGGKTVTLKTLGLAA-------------LMAKSGLPIPANEPSEIPVFKE----- 373 (782)
T ss_pred CceECceeE--ECCCceEEEEECCCCCCcHHHHHHHHHHH-------------HHHHhCCCcccCCCccccccce-----
Q ss_pred CCCCccEEEEEEeecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHHHHHHHhcC-----
Q 001328 90 PVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGG----- 164 (1099)
Q Consensus 90 ~~~~~~~~i~R~~~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~~~lee~~g----- 164 (1099)
.+.+......-...+..-......+..++... ...++.++.- -....+|.+...+...+.-
T Consensus 374 -------i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~---~~~sLvLlDE----~~~GtDp~eg~ala~aile~l~~~ 439 (782)
T PRK00409 374 -------IFADIGDEQSIEQSLSTFSGHMTNIVRILEKA---DKNSLVLFDE----LGAGTDPDEGAALAISILEYLRKR 439 (782)
T ss_pred -------EEEecCCccchhhchhHHHHHHHHHHHHHHhC---CcCcEEEecC----CCCCCCHHHHHHHHHHHHHHHHHC
Q ss_pred ----------------------------------------------------------------hHHHHHHHHHHHHHHH
Q 001328 165 ----------------------------------------------------------------TRVYEERRRESLKIMQ 180 (1099)
Q Consensus 165 ----------------------------------------------------------------~~~~~~~~~e~~~~l~ 180 (1099)
+..-+....+-...+.
T Consensus 440 ~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~ 519 (782)
T PRK00409 440 GAKIIATTHYKELKALMYNREGVENASVEFDEETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGEDKEKLN 519 (782)
T ss_pred CCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhhhhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH----
Q 001328 181 DTGNKRQQIIQVVKYLDERLKELDEEKEELRK-YQQLDKQRKSLEYTIYDKELHDARQKLLEVDDTRTRFSDESAK---- 255 (1099)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---- 255 (1099)
.+-..+......+......+..+..+.+.... +......+..-..........++...+.....+...+-..+..
T Consensus 520 ~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~~~~~ 599 (782)
T PRK00409 520 ELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKG 599 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHH
Q 001328 256 -----MYNSLLDAQEKSKDSDKRFKD 276 (1099)
Q Consensus 256 -----~~~~l~~~~~~~~~~~~~~~~ 276 (1099)
......+....+..+...+..
T Consensus 600 ~~~~~~~~~~~~~~~~l~~~~~~~~~ 625 (782)
T PRK00409 600 GYASVKAHELIEARKRLNKANEKKEK 625 (782)
T ss_pred ccchhhHHHHHHHHHHHHHhhhhhhh
No 486
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.95 E-value=0.0059 Score=59.64 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHH
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
++.+.+|+||||+||||++.+|..+
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
No 487
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.92 E-value=0.0072 Score=61.29 Aligned_cols=42 Identities=19% Similarity=0.429 Sum_probs=0.0
Q ss_pred EEEecccccccccccccCCCC-cEEEEcCCCCChhHHHHHHHH
Q 001328 6 VIIEGFKSYREQIATEPFSPQ-VNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 6 l~l~~f~sf~~~~~~~~f~~~-~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
|.|.|...+.=..+...|+.| +++|+|++||||||++..+.+
T Consensus 1 ~~~~~~~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~ 43 (261)
T cd03271 1 LTLKGARENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLY 43 (261)
T ss_pred CEeeccchhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHH
No 488
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.0057 Score=56.28 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=0.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
+.+.+|+||+|+|||||+.++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~ 25 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALL 25 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
No 489
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.91 E-value=3.8 Score=45.61 Aligned_cols=316 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 154 ERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELH 233 (1099)
Q Consensus 154 ~~~~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 233 (1099)
+....|-++....-.-.-.......+........++...+..+...+..++.+........+-..++....-........
T Consensus 91 ~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~ 170 (629)
T KOG0963|consen 91 DVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAAN 170 (629)
T ss_pred HHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHhhH
Q 001328 234 DARQKLLEVDDTRTRFSDESAKMYNSLLDAQEKSKDSDKRFKDLMKEVQTLNKEKEAIEKRLTEAIKN----QTAFELDV 309 (1099)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~ 309 (1099)
.....+.+-.. .....+......+..++..+...+..++..+.....++..+... ......++
T Consensus 171 ~~e~~~~q~~~-------------e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev 237 (629)
T KOG0963|consen 171 ETEEKLEQEWA-------------EREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEV 237 (629)
T ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCH
Q 001328 310 KDIQERISGNSQARDDAKKQLRSLLEEIDDSSKELDKA-NTLYENKCIEEKKITKDIMEREKQLSILYQKQGRATQFSSK 388 (1099)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 388 (1099)
.-+-..++..+..+..++.++..+...+.......... ...+......+......+..+...+..++...
T Consensus 238 ~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~--------- 308 (629)
T KOG0963|consen 238 SLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASL--------- 308 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH-------------------------HHHHHHHH
Q 001328 389 DARDKWLQKEIDDLERVHSSNLKQDQKLQEEIQRLKGDLKERDEYIE-------------------------SRKREIAY 443 (1099)
Q Consensus 389 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~-------------------------~~~~~~~~ 443 (1099)
.........++..+..++......+..+...+... +.++.+..++. .+-..-..
T Consensus 309 ~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~ 387 (629)
T KOG0963|consen 309 VEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRK 387 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhh
Q ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 444 LESSISQSREGFNNHKTQRDKMQDERKSLWVKESELCAEIDKLKAEVEK 492 (1099)
Q Consensus 444 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 492 (1099)
+..+...++.....+...+.++......+.........-+..+...+..
T Consensus 388 lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~ 436 (629)
T KOG0963|consen 388 LQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLK 436 (629)
T ss_pred hhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhh
No 490
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0053 Score=67.18 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=0.0
Q ss_pred CCCCcEEEEcCCCCChhHHHHHH
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAI 45 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai 45 (1099)
.+...++|||||||||||++++|
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL 367 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLL 367 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
No 491
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.91 E-value=0.0044 Score=55.41 Aligned_cols=15 Identities=40% Similarity=0.826 Sum_probs=0.0
Q ss_pred EEEEcCCCCChhHHH
Q 001328 28 NCVVGANGSGKTNFF 42 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~ 42 (1099)
.+||||+||||||++
T Consensus 39 vaiVG~SGSGKSTLl 53 (228)
T COG4181 39 VAIVGPSGSGKSTLL 53 (228)
T ss_pred EEEEcCCCCcHHhHH
No 492
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.88 E-value=0.0076 Score=52.46 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
...+..|.||+||||||++.-+.-.|.+
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~La~ 54 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGALAG 54 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhhccc
No 493
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.86 E-value=0.0084 Score=70.79 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred CeeeEEEEe----cccccccccccccCCCC-cEEEEcCCCCChhHHHHHHHHHhcccccccc
Q 001328 1 MHIKQVIIE----GFKSYREQIATEPFSPQ-VNCVVGANGSGKTNFFHAIRFVLSDIFQNLR 57 (1099)
Q Consensus 1 M~i~~l~l~----~f~sf~~~~~~~~f~~~-~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~ 57 (1099)
+.++.+.+. +...+.+.+.. |+|| .++|+||||||||||++.|...+-+..+...
T Consensus 342 i~~~~vsf~y~~~~~~il~~i~l~--i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~ 401 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRNINFK--IPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401 (582)
T ss_pred EEEEEEEEecCCCCCccccCceEE--eCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE
No 494
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.86 E-value=0.0085 Score=46.47 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=0.0
Q ss_pred cEEEEcCCCCChhHHHHHHHHHh
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+|.||.||||||+..++.-.|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
No 495
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.85 E-value=2.3 Score=42.57 Aligned_cols=285 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001328 196 LDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARQKLLEVDDTRTRFSDESAKMYNSLLDAQEKSKDSDKRFK 275 (1099)
Q Consensus 196 l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 275 (1099)
+...+..|..+.+....-.........-+..........+...+.--.+.+........ .++..+..+-..+..++.
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~---~QLn~L~aENt~L~SkLe 80 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYN---GQLNVLKAENTMLNSKLE 80 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh---hhHHHHHHHHHHHhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHhcchhhHHHHHHH----HHHHHHHHHHHHHHHHHHhHHH
Q 001328 276 DLMKEVQTLNKEKEAIEKRLTEAIKNQTAFELDVKDIQERISGNSQARDDAKKQ----LRSLLEEIDDSSKELDKANTLY 351 (1099)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~ 351 (1099)
.-+.....++.+++++...+.............-..++-.+.......-.+... +..+.....-+...+...+..+
T Consensus 81 ~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~ 160 (305)
T PF14915_consen 81 KEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKF 160 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 001328 352 ENKCIEEKKITKDIMEREKQLSILYQKQGRATQFSSKDARDKWLQKEIDDLERVHSSNLKQDQKLQEEIQRLKGDLKERD 431 (1099)
Q Consensus 352 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~ 431 (1099)
..+..++......+.+-.--++..+..+... .-++..+......-...+.........++..+..++++.--+.
T Consensus 161 nsLe~elh~trdaLrEKtL~lE~~QrdL~Qt------q~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLr 234 (305)
T PF14915_consen 161 NSLEIELHHTRDALREKTLALESVQRDLSQT------QCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLR 234 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 432 EYIESRKREIAYLESSISQSREGF--------NNHKTQRDKMQDERKSLWVKESELCAEIDKLKAE 489 (1099)
Q Consensus 432 ~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 489 (1099)
.+++.+......-+..+..+...+ .+.....--+...-..+-.+...+...+..+..+
T Consensus 235 QQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkE 300 (305)
T PF14915_consen 235 QQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKE 300 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 496
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=95.84 E-value=0.0052 Score=66.18 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCChhHHHH
Q 001328 24 SPQVNCVVGANGSGKTNFFH 43 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ 43 (1099)
.+.+++|+||+|||||||+.
T Consensus 31 ~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 31 SSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred CCCEEEEECCCCCCHHHHHh
No 497
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.84 E-value=0.0065 Score=60.47 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.|-+.+|+||+||||||+..+|.-.|
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
No 498
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.83 E-value=0.0064 Score=65.27 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=0.0
Q ss_pred EEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhccccccc
Q 001328 5 QVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNL 56 (1099)
Q Consensus 5 ~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~ 56 (1099)
++...|+=.+.+.+.. --.+.-.+|+|||||||||++.||.-+..+.+.++
T Consensus 82 s~s~~g~~l~kd~~~E-l~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~ 132 (614)
T KOG0927|consen 82 SLSFHGVELIKDVTLE-LNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI 132 (614)
T ss_pred eeccCCceeeeeeeEE-ecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc
No 499
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.83 E-value=5.1 Score=46.45 Aligned_cols=354 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001328 194 KYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARQKLLEVDDTRTRFSDESAKMYNSLLDAQEKSKDSDKR 273 (1099)
Q Consensus 194 ~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 273 (1099)
+..+..+..+..+.+.......-...........+..++..+.-++..............+.+..++..+.......+..
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka 408 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKA 408 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001328 274 F---KDLMKEVQTLNKEKEAIEKRLTEAIKNQTAFELDVKDIQERISGNSQARDDAKKQLRSLLEEIDDSSKELDKANTL 350 (1099)
Q Consensus 274 ~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 350 (1099)
. .+........+...+.+...+.++...-..+-........+++.....+.........+...+.++......+..+
T Consensus 409 ~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K 488 (980)
T KOG0980|consen 409 QVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETK 488 (980)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 001328 351 YENKCIEEKKITKDIMEREKQLSILYQKQGRATQFSSKDARDKWLQKEIDDLERVHSSNLKQDQKLQEEIQRLKGDLKER 430 (1099)
Q Consensus 351 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l 430 (1099)
.+.....+..++.++..+..++..++.. +..-..........+...+..-......+
T Consensus 489 ~e~~~~~le~l~~El~~l~~e~~~lq~~-----------------------~~~~~qs~~~~~~~l~~~l~~KD~~~~~~ 545 (980)
T KOG0980|consen 489 TESQAKALESLRQELALLLIELEELQRT-----------------------LSNLAQSHNNQLAQLEDLLKQKDRLAAEL 545 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhCCcc-----
Q 001328 431 DEYIESRKREIAYLESSISQSREGFNNHKTQRDKMQDERKSLWVKESELCAEIDKLKAEVEKAEKSLD-HATPGD----- 504 (1099)
Q Consensus 431 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~----- 504 (1099)
...........-+++..+..+.-.-.+....-.........-----..+......+...+..+..-+. +.....
T Consensus 546 ~~~~~e~~~~~~e~e~si~ql~l~~~~~~ea~~tQ~~~~~~~~il~~~~~~~~q~lq~al~~ld~P~~~~~~~~p~~Lls 625 (980)
T KOG0980|consen 546 VAREEEREALRLEAERSINQLELDSSASTEAGITQLQDDLNDPILDGSLASGIQALQNALYQLDSPLHWRCLTSPDFLLS 625 (980)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhcccccchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCcccCcCCCHHHHHH
Q ss_pred -hHHhHHHHHHHHHHcCCCccccc-cccccccchhhHHHHHHhhccCcceEEecCchHHHHHHHHHhh
Q 001328 505 -VRRGLNSIRRICREYKIDGVYGP-IIELLDCDEKFFTAVEVTAGNSLFHVVVDNDETSTKIIRHLNS 570 (1099)
Q Consensus 505 -~~~~l~~~~~~~~~~~~~~~~~~-l~~~i~~~~~~~~aie~~l~~~l~~~vv~~~~~a~~~~~~l~~ 570 (1099)
.......+..+-....-.-.+|+ +.++|.+-..+...+...+.+....-.+..++.+..++...+.
T Consensus 626 t~~~~s~n~~~~e~~~~~yla~~~d~s~~i~~v~~fs~~~~~~~~na~a~~~ta~~e~~d~v~~l~k~ 693 (980)
T KOG0980|consen 626 TAENASVNATQFETSFNNYLADGDDASDLIHCVTLFSHLISTTINNAKATAYTASPEGSDRVNDLCKK 693 (980)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCchhhhhHhhHHHHHHHHHHHHHhcchhheeccCCchhHHHHHHHHH
No 500
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.0072 Score=63.49 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.|++.+|+|||||||||++..|.+.|
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Done!