Query 001328
Match_columns 1099
No_of_seqs 450 out of 3428
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 22:29:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kta_A Chromosome segregation 99.9 1.8E-26 6.2E-31 224.6 18.2 174 1-176 2-180 (182)
2 3qks_A DNA double-strand break 99.9 9.4E-26 3.2E-30 220.3 13.7 178 1-193 1-191 (203)
3 1w1w_A Structural maintenance 99.9 2.6E-23 8.7E-28 231.1 15.8 173 1-181 2-191 (430)
4 1e69_A Chromosome segregation 99.9 1.7E-22 5.9E-27 214.4 15.7 154 1-163 1-158 (322)
5 3auy_A DNA double-strand break 99.9 8.2E-22 2.8E-26 213.6 18.2 176 1-192 3-185 (371)
6 1f2t_A RAD50 ABC-ATPase; DNA d 99.9 2.2E-22 7.4E-27 184.7 9.5 134 1-150 1-149 (149)
7 4ad8_A DNA repair protein RECN 99.8 1E-18 3.5E-23 198.4 29.0 138 1-166 38-177 (517)
8 3l51_B Structural maintenance 99.8 3.8E-20 1.3E-24 171.5 13.5 149 511-660 6-160 (166)
9 2wd5_B Structural maintenance 99.8 2.1E-19 7.3E-24 177.6 16.2 163 521-683 46-209 (213)
10 3nwc_A SMC protein; structural 99.8 4.1E-19 1.4E-23 166.6 13.6 137 520-661 32-169 (189)
11 3qkt_A DNA double-strand break 99.8 9.3E-20 3.2E-24 194.7 10.5 155 1-170 1-168 (339)
12 1gxl_A SMC, chromosome segrega 99.8 2.3E-17 7.9E-22 164.1 18.9 165 520-684 40-210 (213)
13 2wd5_A Structural maintenance 99.7 4.7E-18 1.6E-22 169.3 11.3 140 521-660 51-197 (233)
14 3l51_A Structural maintenance 99.7 9.7E-18 3.3E-22 155.0 12.3 135 522-658 15-161 (161)
15 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 2.8E-16 9.7E-21 168.5 18.4 153 1-166 1-167 (365)
16 2o5v_A DNA replication and rep 99.7 2E-16 7E-21 166.6 15.6 137 1-164 4-140 (359)
17 1gxj_A SMC, chromosome segrega 99.7 2.8E-16 9.5E-21 151.7 14.2 149 512-660 19-174 (186)
18 1qhl_A Protein (cell division 99.7 1.6E-17 5.3E-22 162.4 2.4 161 1-171 5-209 (227)
19 4aby_A DNA repair protein RECN 99.6 2.9E-14 9.9E-19 158.9 15.6 137 1-165 38-176 (415)
20 1i84_S Smooth muscle myosin he 99.0 1.1E-09 3.7E-14 136.2 11.5 19 27-45 171-189 (1184)
21 1i84_S Smooth muscle myosin he 99.0 1.3E-09 4.5E-14 135.5 11.2 28 121-148 752-784 (1184)
22 3kta_B Chromosome segregation 98.7 2.1E-08 7.3E-13 93.2 7.8 61 1008-1089 1-61 (173)
23 3na7_A HP0958; flagellar bioge 97.9 0.0062 2.1E-07 60.8 25.4 66 313-378 17-82 (256)
24 3euj_A Chromosome partition pr 97.8 1.5E-05 5E-10 87.0 5.6 48 2-51 8-55 (483)
25 1sgw_A Putative ABC transporte 97.7 2E-05 6.8E-10 76.5 3.8 25 25-49 35-59 (214)
26 1g6h_A High-affinity branched- 97.7 1.7E-05 5.8E-10 80.1 3.3 44 6-49 8-57 (257)
27 2pcj_A ABC transporter, lipopr 97.7 1.8E-05 6E-10 78.0 3.1 27 23-49 27-54 (224)
28 1w1w_A Structural maintenance 97.6 2E-05 6.9E-10 87.1 3.7 96 971-1087 224-328 (430)
29 3na7_A HP0958; flagellar bioge 97.6 0.012 4.1E-07 58.7 23.2 39 334-372 45-83 (256)
30 3b85_A Phosphate starvation-in 97.6 7.7E-06 2.6E-10 79.1 -0.1 36 13-48 9-45 (208)
31 1b0u_A Histidine permease; ABC 97.6 2.3E-05 7.9E-10 79.2 3.3 27 23-49 29-56 (262)
32 2olj_A Amino acid ABC transpor 97.6 2.3E-05 8E-10 78.8 3.3 27 23-49 47-74 (263)
33 1htw_A HI0065; nucleotide-bind 97.6 3.8E-05 1.3E-09 70.3 4.3 27 23-49 30-57 (158)
34 1vpl_A ABC transporter, ATP-bi 97.6 2.7E-05 9.3E-10 78.1 3.3 27 23-49 38-65 (256)
35 1ji0_A ABC transporter; ATP bi 97.6 2.9E-05 9.8E-10 77.5 3.3 27 23-49 29-56 (240)
36 4g1u_C Hemin import ATP-bindin 97.6 2.9E-05 1E-09 78.5 3.3 44 6-49 12-61 (266)
37 2d2e_A SUFC protein; ABC-ATPas 97.6 3.5E-05 1.2E-09 77.4 3.7 26 23-48 26-52 (250)
38 3gfo_A Cobalt import ATP-bindi 97.5 3.6E-05 1.2E-09 78.0 3.6 45 6-50 8-59 (275)
39 2qi9_C Vitamin B12 import ATP- 97.5 3.4E-05 1.2E-09 77.0 3.1 27 23-49 23-50 (249)
40 2cbz_A Multidrug resistance-as 97.5 5.3E-05 1.8E-09 75.3 4.1 27 23-49 28-55 (237)
41 2ihy_A ABC transporter, ATP-bi 97.5 4.3E-05 1.5E-09 77.8 3.3 27 23-49 44-71 (279)
42 2zu0_C Probable ATP-dependent 97.5 4.6E-05 1.6E-09 77.2 3.5 26 23-48 43-69 (267)
43 2nq2_C Hypothetical ABC transp 97.5 4.7E-05 1.6E-09 76.4 3.4 27 23-49 28-55 (253)
44 3fvq_A Fe(3+) IONS import ATP- 97.5 4.5E-05 1.5E-09 79.8 3.3 44 6-49 5-54 (359)
45 2ff7_A Alpha-hemolysin translo 97.5 5.5E-05 1.9E-09 75.6 3.6 25 25-49 35-59 (247)
46 2bbs_A Cystic fibrosis transme 97.4 4.2E-05 1.4E-09 78.2 2.7 27 23-49 61-88 (290)
47 1mv5_A LMRA, multidrug resista 97.4 5.5E-05 1.9E-09 75.7 3.3 27 23-49 25-52 (243)
48 1kgd_A CASK, peripheral plasma 97.4 6.3E-05 2.2E-09 71.6 3.5 28 22-49 2-29 (180)
49 1v43_A Sugar-binding transport 97.4 5.5E-05 1.9E-09 80.0 3.3 44 6-49 12-61 (372)
50 2pze_A Cystic fibrosis transme 97.4 7E-05 2.4E-09 74.0 3.8 25 25-49 34-58 (229)
51 3rlf_A Maltose/maltodextrin im 97.4 6.1E-05 2.1E-09 79.4 3.5 44 6-49 4-53 (381)
52 2ixe_A Antigen peptide transpo 97.4 7.3E-05 2.5E-09 75.9 3.8 27 23-49 42-69 (271)
53 2it1_A 362AA long hypothetical 97.4 7.9E-05 2.7E-09 78.4 4.0 25 25-49 29-53 (362)
54 1z47_A CYSA, putative ABC-tran 97.4 7.9E-05 2.7E-09 78.1 4.0 25 25-49 41-65 (355)
55 2yyz_A Sugar ABC transporter, 97.4 6.8E-05 2.3E-09 78.8 3.5 25 25-49 29-53 (359)
56 2v71_A Nuclear distribution pr 97.4 0.039 1.3E-06 50.1 20.4 22 233-254 20-41 (189)
57 2ghi_A Transport protein; mult 97.4 8.7E-05 3E-09 74.9 3.8 27 23-49 43-70 (260)
58 1z6g_A Guanylate kinase; struc 97.4 7.9E-05 2.7E-09 73.3 3.3 27 23-49 20-47 (218)
59 1g29_1 MALK, maltose transport 97.4 9.1E-05 3.1E-09 78.5 3.9 44 6-49 4-53 (372)
60 3tif_A Uncharacterized ABC tra 97.3 8.1E-05 2.8E-09 73.8 3.2 27 23-49 28-55 (235)
61 2onk_A Molybdate/tungstate ABC 97.3 0.00013 4.5E-09 72.3 4.5 27 23-49 22-48 (240)
62 2yz2_A Putative ABC transporte 97.3 0.00011 3.7E-09 74.6 3.8 27 23-49 30-57 (266)
63 1oxx_K GLCV, glucose, ABC tran 97.3 7.1E-05 2.4E-09 78.8 1.9 27 23-49 28-55 (353)
64 4gp7_A Metallophosphoesterase; 97.2 0.00014 4.8E-09 68.4 3.5 20 25-44 9-28 (171)
65 3d31_A Sulfate/molybdate ABC t 97.2 0.0001 3.5E-09 77.2 2.7 26 23-48 23-49 (348)
66 2v71_A Nuclear distribution pr 97.2 0.11 3.9E-06 47.1 22.8 7 345-351 133-139 (189)
67 1znw_A Guanylate kinase, GMP k 97.2 0.00014 5E-09 71.0 3.6 25 25-49 20-44 (207)
68 3a00_A Guanylate kinase, GMP k 97.2 0.00014 4.7E-09 69.7 3.2 26 25-50 1-26 (186)
69 1s96_A Guanylate kinase, GMP k 97.2 0.00015 5.1E-09 70.8 3.3 25 25-49 16-40 (219)
70 1ye8_A Protein THEP1, hypothet 97.2 0.00016 5.5E-09 68.0 3.4 24 27-50 2-25 (178)
71 3o0z_A RHO-associated protein 97.2 0.11 3.9E-06 45.7 21.0 38 336-373 42-79 (168)
72 2jeo_A Uridine-cytidine kinase 97.2 0.0002 6.9E-09 72.1 3.8 29 23-51 22-51 (245)
73 1lvg_A Guanylate kinase, GMP k 97.1 0.00018 6.3E-09 69.4 3.1 25 25-49 4-28 (198)
74 3gd7_A Fusion complex of cysti 97.1 0.00021 7.2E-09 76.1 3.5 23 25-47 47-69 (390)
75 2pjz_A Hypothetical protein ST 97.1 0.00023 7.7E-09 71.6 3.4 27 23-49 28-54 (263)
76 3tr0_A Guanylate kinase, GMP k 97.1 0.00023 7.8E-09 69.7 3.3 25 25-49 7-31 (205)
77 3nh6_A ATP-binding cassette SU 97.1 0.00017 5.9E-09 74.0 2.5 27 23-49 77-104 (306)
78 3ney_A 55 kDa erythrocyte memb 97.1 0.00027 9.3E-09 66.8 3.6 28 22-49 16-43 (197)
79 3ozx_A RNAse L inhibitor; ATP 97.1 0.00021 7.2E-09 80.3 3.1 39 10-51 13-51 (538)
80 2eyu_A Twitching motility prot 97.0 0.00026 9.1E-09 71.3 3.3 26 24-49 24-49 (261)
81 2qag_B Septin-6, protein NEDD5 97.0 0.00013 4.6E-09 77.9 1.0 43 4-47 15-64 (427)
82 3c8u_A Fructokinase; YP_612366 97.0 0.00033 1.1E-08 68.5 3.2 26 25-50 22-47 (208)
83 3tui_C Methionine import ATP-b 96.9 0.00036 1.2E-08 73.0 3.2 27 23-49 51-78 (366)
84 2i3b_A HCR-ntpase, human cance 96.9 0.00046 1.6E-08 65.4 3.7 25 26-50 2-26 (189)
85 3asz_A Uridine kinase; cytidin 96.9 0.00038 1.3E-08 68.4 3.2 26 25-50 6-31 (211)
86 3vkg_A Dynein heavy chain, cyt 96.9 2.7 9.3E-05 57.0 49.5 93 396-488 2013-2105(3245)
87 2v9p_A Replication protein E1; 96.8 0.00057 1.9E-08 69.9 3.8 29 23-51 123-152 (305)
88 2ehv_A Hypothetical protein PH 96.8 0.00051 1.7E-08 69.9 3.5 22 25-46 30-51 (251)
89 3jvv_A Twitching mobility prot 96.8 0.00051 1.8E-08 72.5 3.2 26 24-49 122-147 (356)
90 4eun_A Thermoresistant glucoki 96.8 0.00069 2.4E-08 65.7 3.8 27 25-51 29-55 (200)
91 3lnc_A Guanylate kinase, GMP k 96.8 0.00046 1.6E-08 68.9 2.5 24 26-49 28-52 (231)
92 1zp6_A Hypothetical protein AT 96.8 0.00051 1.7E-08 66.3 2.6 26 23-48 6-32 (191)
93 3aez_A Pantothenate kinase; tr 96.8 0.00059 2E-08 70.8 3.2 26 25-50 90-115 (312)
94 1rj9_A FTSY, signal recognitio 96.7 0.00076 2.6E-08 69.5 3.7 27 24-50 101-127 (304)
95 3sop_A Neuronal-specific septi 96.7 0.00056 1.9E-08 69.3 2.6 25 27-51 4-28 (270)
96 3b9q_A Chloroplast SRP recepto 96.7 0.00071 2.4E-08 69.7 3.3 26 25-50 100-125 (302)
97 3tau_A Guanylate kinase, GMP k 96.7 0.00082 2.8E-08 65.6 3.3 26 24-49 7-32 (208)
98 2efr_A General control protein 96.7 0.3 1E-05 42.9 22.8 75 273-347 43-117 (155)
99 2bdt_A BH3686; alpha-beta prot 96.6 0.00085 2.9E-08 64.5 3.3 23 27-49 4-26 (189)
100 3vkg_A Dynein heavy chain, cyt 96.6 0.7 2.4E-05 62.4 31.0 24 27-50 908-931 (3245)
101 2bbw_A Adenylate kinase 4, AK4 96.6 0.001 3.4E-08 67.1 3.7 27 25-51 27-53 (246)
102 1kag_A SKI, shikimate kinase I 96.6 0.0011 3.8E-08 62.6 3.6 26 26-51 5-30 (173)
103 2kjq_A DNAA-related protein; s 96.6 0.0012 4.2E-08 59.8 3.5 26 24-49 35-60 (149)
104 1p9r_A General secretion pathw 96.6 0.00095 3.2E-08 72.0 3.2 26 24-49 166-191 (418)
105 3e70_C DPA, signal recognition 96.5 0.001 3.4E-08 69.3 3.2 26 24-49 128-153 (328)
106 4a74_A DNA repair and recombin 96.5 0.001 3.5E-08 66.6 3.0 27 23-49 22-49 (231)
107 2x8a_A Nuclear valosin-contain 96.5 0.00098 3.4E-08 68.0 2.8 28 23-51 43-70 (274)
108 2og2_A Putative signal recogni 96.5 0.0011 3.7E-08 69.7 3.2 25 25-49 157-181 (359)
109 2ewv_A Twitching motility prot 96.5 0.0012 4E-08 70.7 3.2 25 25-49 136-160 (372)
110 3ec2_A DNA replication protein 96.5 0.0013 4.4E-08 62.6 3.2 26 25-50 38-63 (180)
111 2j41_A Guanylate kinase; GMP, 96.5 0.0013 4.5E-08 64.4 3.4 25 25-49 6-30 (207)
112 1tq4_A IIGP1, interferon-induc 96.5 0.001 3.5E-08 71.4 2.7 23 27-49 71-93 (413)
113 3tqc_A Pantothenate kinase; bi 96.4 0.0013 4.5E-08 67.8 3.3 25 26-50 93-117 (321)
114 3uie_A Adenylyl-sulfate kinase 96.4 0.0013 4.6E-08 63.7 3.1 26 25-50 25-50 (200)
115 1sq5_A Pantothenate kinase; P- 96.4 0.0013 4.4E-08 68.6 3.1 25 26-50 81-105 (308)
116 2yhs_A FTSY, cell division pro 96.4 0.0014 4.8E-08 71.0 3.2 25 25-49 293-317 (503)
117 1cr0_A DNA primase/helicase; R 96.4 0.0013 4.6E-08 68.4 2.8 38 10-49 21-59 (296)
118 1knq_A Gluconate kinase; ALFA/ 96.3 0.0018 6.3E-08 61.2 3.5 27 25-51 8-34 (175)
119 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0018 6.1E-08 73.1 3.9 25 26-50 48-72 (538)
120 2efr_A General control protein 96.3 0.51 1.8E-05 41.5 23.2 40 324-363 73-112 (155)
121 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0014 4.7E-08 68.8 2.5 25 25-49 171-195 (330)
122 2gza_A Type IV secretion syste 96.3 0.0016 5.4E-08 69.5 3.0 25 25-49 175-199 (361)
123 3b5x_A Lipid A export ATP-bind 96.3 0.0021 7.1E-08 73.9 4.1 27 23-49 366-393 (582)
124 2yv5_A YJEQ protein; hydrolase 96.3 0.002 6.8E-08 66.8 3.5 25 25-50 165-189 (302)
125 4e22_A Cytidylate kinase; P-lo 96.2 0.0024 8.2E-08 64.3 3.7 26 26-51 28-53 (252)
126 3j16_B RLI1P; ribosome recycli 96.2 0.0022 7.6E-08 72.9 3.8 26 25-50 103-128 (608)
127 3qf4_B Uncharacterized ABC tra 96.2 0.003 1E-07 72.7 4.7 27 23-49 378-405 (598)
128 3b60_A Lipid A export ATP-bind 96.1 0.0023 8E-08 73.5 3.6 27 23-49 366-393 (582)
129 2iw3_A Elongation factor 3A; a 96.1 0.0018 6.2E-08 76.8 2.6 22 25-46 461-482 (986)
130 2rcn_A Probable GTPase ENGC; Y 96.1 0.0025 8.4E-08 66.7 3.3 23 25-47 215-237 (358)
131 2qag_C Septin-7; cell cycle, c 96.1 0.0022 7.4E-08 69.2 2.9 18 29-46 35-52 (418)
132 2f1r_A Molybdopterin-guanine d 96.1 0.0016 5.4E-08 60.4 1.5 25 26-50 3-27 (171)
133 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0026 8.9E-08 63.8 3.1 39 10-49 8-47 (235)
134 1yqt_A RNAse L inhibitor; ATP- 96.0 0.0028 9.5E-08 71.5 3.2 25 25-49 312-336 (538)
135 1ixz_A ATP-dependent metallopr 96.0 0.0033 1.1E-07 63.8 3.4 26 24-50 49-74 (254)
136 3bk7_A ABC transporter ATP-bin 96.0 0.0029 1E-07 72.1 3.2 25 25-49 382-406 (607)
137 2fxo_A Myosin heavy chain, car 96.0 0.7 2.4E-05 39.9 19.0 32 342-373 90-121 (129)
138 3ozx_A RNAse L inhibitor; ATP 95.9 0.003 1E-07 70.9 3.2 25 25-49 294-318 (538)
139 3bk7_A ABC transporter ATP-bin 95.9 0.003 1E-07 72.0 3.1 25 26-50 118-142 (607)
140 2npi_A Protein CLP1; CLP1-PCF1 95.9 0.0033 1.1E-07 68.9 3.3 25 25-49 138-162 (460)
141 1rz3_A Hypothetical protein rb 95.9 0.0034 1.2E-07 60.7 3.0 25 25-49 22-46 (201)
142 2iw3_A Elongation factor 3A; a 95.9 0.0024 8.1E-08 75.9 2.2 25 25-49 699-723 (986)
143 1jjv_A Dephospho-COA kinase; P 95.9 0.0031 1.1E-07 61.5 2.7 24 27-51 4-27 (206)
144 2if2_A Dephospho-COA kinase; a 95.9 0.0035 1.2E-07 61.0 3.0 24 27-51 3-26 (204)
145 3ux8_A Excinuclease ABC, A sub 95.9 0.0034 1.2E-07 73.6 3.4 39 4-44 22-63 (670)
146 2qnr_A Septin-2, protein NEDD5 95.9 0.0021 7E-08 66.6 1.4 18 29-46 22-39 (301)
147 2qm8_A GTPase/ATPase; G protei 95.9 0.0036 1.2E-07 65.9 3.2 25 25-49 55-79 (337)
148 1cke_A CK, MSSA, protein (cyti 95.8 0.0045 1.5E-07 61.5 3.7 26 26-51 6-31 (227)
149 1lw7_A Transcriptional regulat 95.8 0.0041 1.4E-07 66.8 3.5 26 26-51 171-196 (365)
150 1iy2_A ATP-dependent metallopr 95.8 0.0042 1.4E-07 63.9 3.4 26 24-50 73-98 (278)
151 2vp4_A Deoxynucleoside kinase; 95.8 0.0025 8.5E-08 63.3 1.6 23 25-47 20-42 (230)
152 1in4_A RUVB, holliday junction 95.8 0.0048 1.6E-07 65.3 3.9 26 26-51 52-77 (334)
153 2obl_A ESCN; ATPase, hydrolase 95.8 0.004 1.4E-07 65.5 3.2 25 25-49 71-95 (347)
154 3j16_B RLI1P; ribosome recycli 95.8 0.0034 1.2E-07 71.4 2.8 24 27-50 380-403 (608)
155 1nij_A Hypothetical protein YJ 95.8 0.0032 1.1E-07 65.9 2.4 21 26-46 5-25 (318)
156 3qf4_A ABC transporter, ATP-bi 95.8 0.0034 1.2E-07 72.0 2.7 25 25-49 369-393 (587)
157 2oap_1 GSPE-2, type II secreti 95.8 0.0038 1.3E-07 69.5 3.0 25 25-49 260-284 (511)
158 1t9h_A YLOQ, probable GTPase E 95.8 0.0018 6.1E-08 66.4 0.3 22 25-46 173-194 (307)
159 2yl4_A ATP-binding cassette SU 95.7 0.0038 1.3E-07 71.9 3.0 27 23-49 367-394 (595)
160 1u0l_A Probable GTPase ENGC; p 95.7 0.0044 1.5E-07 64.2 3.0 25 25-49 169-193 (301)
161 2px0_A Flagellar biosynthesis 95.7 0.0053 1.8E-07 63.1 3.5 27 24-50 104-130 (296)
162 3t61_A Gluconokinase; PSI-biol 95.7 0.0058 2E-07 59.3 3.6 27 25-51 18-44 (202)
163 1svm_A Large T antigen; AAA+ f 95.7 0.006 2E-07 64.7 3.9 27 25-51 169-195 (377)
164 2qor_A Guanylate kinase; phosp 95.7 0.006 2.1E-07 59.2 3.6 26 24-49 11-36 (204)
165 3szr_A Interferon-induced GTP- 95.6 0.0041 1.4E-07 71.4 2.5 27 23-49 43-69 (608)
166 1oix_A RAS-related protein RAB 95.6 0.005 1.7E-07 59.1 2.7 22 27-48 31-52 (191)
167 1wb9_A DNA mismatch repair pro 95.6 0.0058 2E-07 71.9 3.7 24 25-48 607-630 (800)
168 4a82_A Cystic fibrosis transme 95.5 0.0035 1.2E-07 71.9 1.6 27 23-49 364-391 (578)
169 1ewq_A DNA mismatch repair pro 95.5 0.0059 2E-07 71.4 3.5 27 23-49 574-600 (765)
170 2dpy_A FLII, flagellum-specifi 95.5 0.0056 1.9E-07 66.7 3.2 27 23-49 154-181 (438)
171 1pui_A ENGB, probable GTP-bind 95.5 0.0038 1.3E-07 61.2 1.6 24 23-46 23-47 (210)
172 1vma_A Cell division protein F 95.5 0.0067 2.3E-07 62.4 3.3 26 25-50 104-129 (306)
173 2f9l_A RAB11B, member RAS onco 95.5 0.0063 2.2E-07 58.9 3.0 22 27-48 7-28 (199)
174 3vaa_A Shikimate kinase, SK; s 95.4 0.0084 2.9E-07 57.9 3.8 26 26-51 26-51 (199)
175 3thx_B DNA mismatch repair pro 95.4 0.0053 1.8E-07 73.0 2.7 23 25-47 673-695 (918)
176 2cvh_A DNA repair and recombin 95.4 0.0061 2.1E-07 60.2 2.6 25 23-47 17-42 (220)
177 1ex7_A Guanylate kinase; subst 95.4 0.0076 2.6E-07 56.5 3.0 22 27-48 3-24 (186)
178 3ibp_A Chromosome partition pr 95.2 2.4 8.2E-05 41.2 24.7 34 528-564 128-162 (302)
179 1nlf_A Regulatory protein REPA 95.2 0.0093 3.2E-07 61.3 3.5 25 25-49 30-54 (279)
180 2pez_A Bifunctional 3'-phospho 95.2 0.0094 3.2E-07 56.4 3.3 25 25-49 5-29 (179)
181 2qt1_A Nicotinamide riboside k 95.2 0.0076 2.6E-07 58.7 2.7 27 23-49 18-45 (207)
182 3thx_A DNA mismatch repair pro 95.2 0.0073 2.5E-07 72.1 2.9 21 26-46 663-683 (934)
183 3ux8_A Excinuclease ABC, A sub 95.1 0.0055 1.9E-07 71.8 1.6 22 25-46 348-369 (670)
184 1ega_A Protein (GTP-binding pr 95.1 0.007 2.4E-07 62.7 2.1 25 23-47 6-30 (301)
185 3nwj_A ATSK2; P loop, shikimat 95.1 0.012 4.2E-07 58.4 3.7 27 25-51 48-74 (250)
186 1n0w_A DNA repair protein RAD5 95.1 0.011 3.7E-07 59.5 3.5 22 26-47 25-46 (243)
187 1np6_A Molybdopterin-guanine d 95.0 0.013 4.5E-07 54.4 3.5 24 26-49 7-30 (174)
188 2ygr_A Uvrabc system protein A 95.0 0.0087 3E-07 70.8 2.8 39 6-46 648-689 (993)
189 2o8b_B DNA mismatch repair pro 95.0 0.0099 3.4E-07 72.1 3.2 20 26-45 790-809 (1022)
190 1odf_A YGR205W, hypothetical 3 95.0 0.011 3.8E-07 60.4 3.1 27 25-51 31-57 (290)
191 3r20_A Cytidylate kinase; stru 94.9 0.015 5.1E-07 56.8 3.7 27 25-51 9-35 (233)
192 2dr3_A UPF0273 protein PH0284; 94.9 0.0094 3.2E-07 60.2 2.4 25 23-47 20-45 (247)
193 1via_A Shikimate kinase; struc 94.9 0.014 4.9E-07 54.8 3.4 25 27-51 6-30 (175)
194 2ze6_A Isopentenyl transferase 94.8 0.014 4.9E-07 58.6 3.4 25 27-51 3-27 (253)
195 3kb2_A SPBC2 prophage-derived 94.8 0.015 5.3E-07 54.6 3.4 25 27-51 3-27 (173)
196 1zu4_A FTSY; GTPase, signal re 94.7 0.015 5.2E-07 60.3 3.3 26 25-50 105-130 (320)
197 2r6f_A Excinuclease ABC subuni 94.7 0.0091 3.1E-07 70.3 1.7 24 23-46 647-671 (972)
198 1q3t_A Cytidylate kinase; nucl 94.6 0.02 6.9E-07 57.0 4.0 28 24-51 15-42 (236)
199 1qhx_A CPT, protein (chloramph 94.6 0.019 6.6E-07 54.2 3.5 27 25-51 3-29 (178)
200 2www_A Methylmalonic aciduria 94.6 0.016 5.5E-07 61.3 3.3 25 25-49 74-98 (349)
201 1tf7_A KAIC; homohexamer, hexa 94.6 0.017 5.7E-07 65.5 3.5 21 25-45 39-59 (525)
202 2wji_A Ferrous iron transport 94.6 0.015 5.3E-07 54.0 2.8 20 27-46 5-24 (165)
203 2p5t_B PEZT; postsegregational 94.6 0.017 5.6E-07 58.3 3.2 27 25-51 32-58 (253)
204 1pzn_A RAD51, DNA repair and r 94.5 0.015 5.3E-07 61.4 3.0 24 26-49 132-155 (349)
205 3cm0_A Adenylate kinase; ATP-b 94.4 0.021 7.1E-07 54.4 3.4 25 27-51 6-30 (186)
206 1lv7_A FTSH; alpha/beta domain 94.4 0.022 7.4E-07 57.8 3.7 26 26-51 46-71 (257)
207 2b9c_A Striated-muscle alpha t 94.4 0.96 3.3E-05 39.7 13.4 27 242-268 8-34 (147)
208 1xjc_A MOBB protein homolog; s 94.4 0.024 8.3E-07 51.9 3.5 24 26-49 5-28 (169)
209 1gvn_B Zeta; postsegregational 94.4 0.017 5.7E-07 59.3 2.7 25 25-49 33-57 (287)
210 2yvu_A Probable adenylyl-sulfa 94.3 0.02 6.9E-07 54.5 3.1 26 25-50 13-38 (186)
211 1ly1_A Polynucleotide kinase; 94.3 0.018 6.3E-07 54.6 2.7 22 26-47 3-24 (181)
212 3lw7_A Adenylate kinase relate 94.2 0.022 7.6E-07 53.8 3.1 24 27-51 3-26 (179)
213 1ni3_A YCHF GTPase, YCHF GTP-b 94.1 0.023 7.7E-07 60.5 3.2 25 23-47 17-42 (392)
214 2vf7_A UVRA2, excinuclease ABC 94.1 0.014 4.9E-07 68.5 1.8 22 23-44 520-542 (842)
215 3cr8_A Sulfate adenylyltranfer 94.1 0.015 5.1E-07 65.2 1.8 25 27-51 371-395 (552)
216 1ls1_A Signal recognition part 94.1 0.025 8.4E-07 58.2 3.2 26 25-50 98-123 (295)
217 1m7g_A Adenylylsulfate kinase; 94.0 0.025 8.7E-07 55.1 3.1 26 25-50 25-50 (211)
218 1vht_A Dephospho-COA kinase; s 94.0 0.024 8.4E-07 55.6 3.0 25 26-51 5-29 (218)
219 2dhr_A FTSH; AAA+ protein, hex 94.0 0.031 1.1E-06 61.7 4.0 26 24-50 64-89 (499)
220 2gj8_A MNME, tRNA modification 94.0 0.023 7.9E-07 53.2 2.6 20 27-46 6-25 (172)
221 3iij_A Coilin-interacting nucl 94.0 0.034 1.2E-06 52.6 3.8 27 25-51 11-37 (180)
222 3hr8_A Protein RECA; alpha and 94.0 0.025 8.7E-07 59.2 3.1 23 27-49 63-85 (356)
223 3trf_A Shikimate kinase, SK; a 93.9 0.034 1.2E-06 52.8 3.7 27 25-51 5-31 (185)
224 1kht_A Adenylate kinase; phosp 93.9 0.031 1.1E-06 53.6 3.5 25 26-50 4-28 (192)
225 2rhm_A Putative kinase; P-loop 93.9 0.028 9.7E-07 53.9 3.2 27 25-51 5-31 (193)
226 3kl4_A SRP54, signal recogniti 93.9 0.024 8.1E-07 61.1 2.8 25 25-49 97-121 (433)
227 3pih_A Uvrabc system protein A 93.7 0.04 1.4E-06 65.4 4.5 19 25-43 610-628 (916)
228 3cf0_A Transitional endoplasmi 93.7 0.046 1.6E-06 56.7 4.5 27 25-51 49-75 (301)
229 2wjg_A FEOB, ferrous iron tran 93.7 0.029 9.9E-07 53.5 2.8 20 27-46 9-28 (188)
230 2zej_A Dardarin, leucine-rich 93.6 0.03 1E-06 53.2 2.8 19 28-46 5-23 (184)
231 2w58_A DNAI, primosome compone 93.6 0.041 1.4E-06 53.2 3.7 25 26-50 55-79 (202)
232 4eaq_A DTMP kinase, thymidylat 93.6 0.037 1.3E-06 54.4 3.4 25 26-50 27-51 (229)
233 2jaq_A Deoxyguanosine kinase; 93.6 0.037 1.3E-06 53.7 3.4 25 27-51 2-26 (205)
234 1y63_A LMAJ004144AAA protein; 93.6 0.046 1.6E-06 51.7 4.0 26 26-51 11-37 (184)
235 2p67_A LAO/AO transport system 93.5 0.032 1.1E-06 58.9 3.0 25 25-49 56-80 (341)
236 3ake_A Cytidylate kinase; CMP 93.5 0.042 1.4E-06 53.4 3.7 25 27-51 4-28 (208)
237 3m6a_A ATP-dependent protease 93.4 0.037 1.3E-06 62.7 3.5 28 24-51 107-134 (543)
238 2c95_A Adenylate kinase 1; tra 93.4 0.045 1.5E-06 52.6 3.6 28 24-51 8-35 (196)
239 1sxj_E Activator 1 40 kDa subu 93.4 0.037 1.3E-06 59.4 3.2 22 28-49 39-60 (354)
240 1tf7_A KAIC; homohexamer, hexa 93.3 0.041 1.4E-06 62.3 3.6 24 26-49 282-305 (525)
241 3lda_A DNA repair protein RAD5 93.3 0.043 1.5E-06 58.8 3.5 21 26-46 179-199 (400)
242 2vli_A Antibiotic resistance p 93.2 0.041 1.4E-06 52.2 3.0 27 25-51 5-31 (183)
243 1tev_A UMP-CMP kinase; ploop, 93.2 0.044 1.5E-06 52.7 3.2 27 25-51 3-29 (196)
244 3pqc_A Probable GTP-binding pr 93.2 0.058 2E-06 51.7 4.1 20 27-46 25-44 (195)
245 3g5u_A MCG1178, multidrug resi 93.2 0.032 1.1E-06 70.4 2.6 24 25-48 416-439 (1284)
246 1j8m_F SRP54, signal recogniti 93.1 0.043 1.5E-06 56.3 3.0 25 25-49 98-122 (297)
247 3bos_A Putative DNA replicatio 93.1 0.051 1.7E-06 54.4 3.6 27 25-51 52-78 (242)
248 1gtv_A TMK, thymidylate kinase 93.1 0.023 7.8E-07 55.7 0.9 24 27-50 2-25 (214)
249 2z0h_A DTMP kinase, thymidylat 93.1 0.052 1.8E-06 52.2 3.4 23 27-49 2-24 (197)
250 3exa_A TRNA delta(2)-isopenten 93.0 0.045 1.5E-06 55.4 2.9 27 25-51 3-29 (322)
251 4ag6_A VIRB4 ATPase, type IV s 93.0 0.071 2.4E-06 57.8 4.7 25 25-49 35-59 (392)
252 1udx_A The GTP-binding protein 92.9 0.032 1.1E-06 60.1 1.9 20 27-46 159-178 (416)
253 2iyv_A Shikimate kinase, SK; t 92.9 0.062 2.1E-06 50.9 3.7 26 26-51 3-28 (184)
254 2ffh_A Protein (FFH); SRP54, s 92.9 0.049 1.7E-06 58.6 3.2 27 24-50 97-123 (425)
255 2grj_A Dephospho-COA kinase; T 92.8 0.06 2.1E-06 51.0 3.4 26 26-51 13-38 (192)
256 1sxj_C Activator 1 40 kDa subu 92.8 0.054 1.8E-06 57.5 3.5 23 28-50 49-71 (340)
257 3foz_A TRNA delta(2)-isopenten 92.8 0.051 1.8E-06 54.9 3.0 27 25-51 10-36 (316)
258 1e6c_A Shikimate kinase; phosp 92.8 0.061 2.1E-06 50.4 3.4 25 27-51 4-28 (173)
259 1uf9_A TT1252 protein; P-loop, 92.8 0.045 1.5E-06 53.0 2.5 24 25-48 8-31 (203)
260 1zak_A Adenylate kinase; ATP:A 92.7 0.061 2.1E-06 52.9 3.5 26 26-51 6-31 (222)
261 1svi_A GTP-binding protein YSX 92.7 0.076 2.6E-06 50.9 4.1 21 26-46 24-44 (195)
262 1nks_A Adenylate kinase; therm 92.7 0.053 1.8E-06 52.0 3.0 24 27-50 3-26 (194)
263 3dm5_A SRP54, signal recogniti 92.6 0.057 1.9E-06 58.1 3.2 25 25-49 100-124 (443)
264 2cdn_A Adenylate kinase; phosp 92.6 0.08 2.7E-06 51.0 4.1 27 25-51 20-46 (201)
265 2bwj_A Adenylate kinase 5; pho 92.5 0.069 2.3E-06 51.4 3.5 27 25-51 12-38 (199)
266 3iev_A GTP-binding protein ERA 92.5 0.043 1.5E-06 57.0 2.0 24 23-46 8-31 (308)
267 3g5u_A MCG1178, multidrug resi 92.5 0.051 1.8E-06 68.5 3.1 25 25-49 1059-1083(1284)
268 3d3q_A TRNA delta(2)-isopenten 92.4 0.069 2.4E-06 55.1 3.4 26 26-51 8-33 (340)
269 1qf9_A UMP/CMP kinase, protein 92.3 0.065 2.2E-06 51.3 3.0 26 26-51 7-32 (194)
270 2qtf_A Protein HFLX, GTP-bindi 92.3 0.059 2E-06 57.2 2.9 20 27-46 181-200 (364)
271 3b9p_A CG5977-PA, isoform A; A 92.3 0.075 2.6E-06 55.2 3.7 27 25-51 54-80 (297)
272 1jbk_A CLPB protein; beta barr 92.3 0.082 2.8E-06 50.6 3.7 26 25-50 43-68 (195)
273 4f4c_A Multidrug resistance pr 92.2 0.054 1.8E-06 68.5 2.9 23 26-48 445-467 (1321)
274 2pt5_A Shikimate kinase, SK; a 92.2 0.079 2.7E-06 49.3 3.4 25 27-51 2-26 (168)
275 3crm_A TRNA delta(2)-isopenten 92.2 0.067 2.3E-06 54.9 3.0 26 26-51 6-31 (323)
276 3lxx_A GTPase IMAP family memb 92.2 0.066 2.3E-06 53.4 2.9 19 28-46 32-50 (239)
277 2xb4_A Adenylate kinase; ATP-b 92.1 0.079 2.7E-06 52.0 3.4 25 27-51 2-26 (223)
278 1zd8_A GTP:AMP phosphotransfer 92.1 0.078 2.7E-06 52.3 3.3 27 25-51 7-33 (227)
279 1ukz_A Uridylate kinase; trans 92.1 0.075 2.6E-06 51.3 3.2 26 26-51 16-41 (203)
280 2wwf_A Thymidilate kinase, put 92.0 0.078 2.7E-06 51.7 3.3 28 24-51 9-36 (212)
281 2v54_A DTMP kinase, thymidylat 92.0 0.083 2.8E-06 51.1 3.4 25 26-50 5-29 (204)
282 1a7j_A Phosphoribulokinase; tr 92.0 0.061 2.1E-06 55.0 2.5 25 26-50 6-30 (290)
283 1l8q_A Chromosomal replication 92.0 0.086 3E-06 55.5 3.7 24 26-49 38-61 (324)
284 2ga8_A Hypothetical 39.9 kDa p 92.0 0.078 2.7E-06 54.8 3.2 24 28-51 27-50 (359)
285 2plr_A DTMP kinase, probable t 91.9 0.081 2.8E-06 51.6 3.2 26 26-51 5-30 (213)
286 3eph_A TRNA isopentenyltransfe 91.9 0.077 2.6E-06 55.9 3.1 27 25-51 2-28 (409)
287 3t15_A Ribulose bisphosphate c 91.8 0.11 3.8E-06 53.4 4.2 27 25-51 36-62 (293)
288 3llm_A ATP-dependent RNA helic 91.8 0.088 3E-06 52.2 3.4 22 25-46 76-97 (235)
289 3k53_A Ferrous iron transport 91.8 0.068 2.3E-06 54.4 2.5 20 27-46 5-24 (271)
290 2e87_A Hypothetical protein PH 91.8 0.086 2.9E-06 56.2 3.4 23 24-46 166-188 (357)
291 1njg_A DNA polymerase III subu 91.7 0.09 3.1E-06 52.8 3.4 26 26-51 46-71 (250)
292 3a4m_A L-seryl-tRNA(SEC) kinas 91.7 0.084 2.9E-06 53.3 3.1 24 26-49 5-28 (260)
293 2qmh_A HPR kinase/phosphorylas 91.7 0.078 2.7E-06 49.4 2.6 26 24-49 33-58 (205)
294 1f6b_A SAR1; gtpases, N-termin 91.6 0.049 1.7E-06 52.4 1.2 22 24-45 24-45 (198)
295 1aky_A Adenylate kinase; ATP:A 91.6 0.11 3.8E-06 50.9 3.8 26 26-51 5-30 (220)
296 1nn5_A Similar to deoxythymidy 91.6 0.095 3.2E-06 51.2 3.3 26 25-50 9-34 (215)
297 1zuh_A Shikimate kinase; alpha 91.6 0.11 3.7E-06 48.3 3.6 26 26-51 8-33 (168)
298 2z4s_A Chromosomal replication 91.6 0.096 3.3E-06 57.5 3.6 24 26-49 131-154 (440)
299 2v3c_C SRP54, signal recogniti 91.5 0.1 3.5E-06 56.6 3.7 25 25-49 99-123 (432)
300 3oja_B Anopheles plasmodium-re 91.5 2.7 9.1E-05 48.5 16.1 19 479-497 563-581 (597)
301 2pbr_A DTMP kinase, thymidylat 91.4 0.11 3.6E-06 49.9 3.4 23 27-49 2-24 (195)
302 3fb4_A Adenylate kinase; psych 91.4 0.11 3.6E-06 50.9 3.4 24 28-51 3-26 (216)
303 2p65_A Hypothetical protein PF 91.4 0.089 3E-06 50.0 2.8 25 25-49 43-67 (187)
304 1tue_A Replication protein E1; 91.4 0.094 3.2E-06 49.1 2.8 26 26-51 59-84 (212)
305 1uj2_A Uridine-cytidine kinase 91.4 0.1 3.4E-06 52.4 3.3 26 26-51 23-48 (252)
306 2ce7_A Cell division protein F 91.3 0.12 4E-06 56.8 4.0 25 27-51 51-75 (476)
307 2ged_A SR-beta, signal recogni 91.3 0.09 3.1E-06 50.3 2.8 21 27-47 50-70 (193)
308 1fzq_A ADP-ribosylation factor 91.3 0.087 3E-06 49.7 2.6 20 27-46 18-37 (181)
309 2qag_A Septin-2, protein NEDD5 91.3 0.07 2.4E-06 56.7 2.1 18 28-45 40-57 (361)
310 4f4c_A Multidrug resistance pr 91.2 0.076 2.6E-06 67.1 2.7 23 26-48 1106-1128(1321)
311 2r6a_A DNAB helicase, replicat 91.2 0.081 2.8E-06 58.5 2.6 28 22-49 199-227 (454)
312 3hnw_A Uncharacterized protein 91.2 5.2 0.00018 34.7 13.2 11 641-651 11-21 (138)
313 4fcw_A Chaperone protein CLPB; 91.2 0.096 3.3E-06 54.8 3.0 26 26-51 48-73 (311)
314 3n70_A Transport activator; si 91.1 0.12 4.1E-06 46.5 3.2 25 25-49 24-48 (145)
315 1mky_A Probable GTP-binding pr 91.1 0.089 3E-06 57.9 2.8 20 27-46 182-201 (439)
316 2ohf_A Protein OLA1, GTP-bindi 91.1 0.097 3.3E-06 55.5 2.9 20 27-46 24-43 (396)
317 1fnn_A CDC6P, cell division co 91.1 0.11 3.9E-06 56.4 3.7 23 27-49 46-68 (389)
318 2f6r_A COA synthase, bifunctio 91.1 0.097 3.3E-06 53.4 2.8 25 26-51 76-100 (281)
319 3t34_A Dynamin-related protein 91.0 0.11 3.7E-06 55.6 3.2 25 23-47 32-56 (360)
320 1wf3_A GTP-binding protein; GT 91.0 0.078 2.7E-06 54.7 2.0 24 23-46 5-28 (301)
321 3ol1_A Vimentin; structural ge 91.0 6.4 0.00022 33.2 15.4 34 897-930 66-99 (119)
322 3h4m_A Proteasome-activating n 91.0 0.13 4.3E-06 53.0 3.7 27 25-51 51-77 (285)
323 2h92_A Cytidylate kinase; ross 91.0 0.13 4.6E-06 50.3 3.7 27 25-51 3-29 (219)
324 2qby_A CDC6 homolog 1, cell di 91.0 0.12 4E-06 56.2 3.6 25 25-49 45-69 (386)
325 2orw_A Thymidine kinase; TMTK, 90.9 0.1 3.4E-06 49.1 2.5 19 25-43 3-21 (184)
326 3dl0_A Adenylate kinase; phosp 90.8 0.12 4.3E-06 50.4 3.2 24 28-51 3-26 (216)
327 2zr9_A Protein RECA, recombina 90.7 0.14 4.7E-06 54.0 3.5 24 26-49 62-85 (349)
328 3k1j_A LON protease, ATP-depen 90.6 0.12 4.2E-06 59.5 3.5 27 25-51 60-86 (604)
329 3b1v_A Ferrous iron uptake tra 90.6 0.12 4E-06 52.3 2.9 20 27-46 5-24 (272)
330 1moz_A ARL1, ADP-ribosylation 90.6 0.083 2.8E-06 50.0 1.7 20 27-46 20-39 (183)
331 3io5_A Recombination and repai 90.6 0.095 3.2E-06 53.0 2.1 24 21-44 24-47 (333)
332 1z2a_A RAS-related protein RAB 90.5 0.13 4.5E-06 47.7 3.0 19 28-46 8-26 (168)
333 1m2o_B GTP-binding protein SAR 90.5 0.13 4.4E-06 49.0 2.9 22 25-46 23-44 (190)
334 2dyk_A GTP-binding protein; GT 90.4 0.13 4.6E-06 47.2 2.9 20 28-47 4-23 (161)
335 2qz4_A Paraplegin; AAA+, SPG7, 90.4 0.16 5.6E-06 51.4 3.8 27 25-51 39-65 (262)
336 3a8t_A Adenylate isopentenyltr 90.4 0.11 3.7E-06 53.5 2.3 26 26-51 41-66 (339)
337 1e4v_A Adenylate kinase; trans 90.3 0.15 5E-06 49.7 3.2 24 28-51 3-26 (214)
338 3ol1_A Vimentin; structural ge 90.1 7.7 0.00026 32.7 14.1 19 671-689 20-38 (119)
339 1ltq_A Polynucleotide kinase; 90.1 0.13 4.3E-06 53.5 2.7 22 26-47 3-24 (301)
340 1z0j_A RAB-22, RAS-related pro 90.0 0.14 4.8E-06 47.6 2.8 19 28-46 9-27 (170)
341 1ek0_A Protein (GTP-binding pr 90.0 0.14 4.8E-06 47.5 2.8 19 28-46 6-24 (170)
342 1kao_A RAP2A; GTP-binding prot 89.9 0.15 5.2E-06 47.1 2.9 19 28-46 6-24 (167)
343 2ocy_A RAB guanine nucleotide 89.9 9.5 0.00032 33.4 21.4 31 464-494 112-142 (154)
344 2r62_A Cell division protease 89.9 0.11 3.9E-06 52.7 2.2 25 27-51 46-70 (268)
345 1ky3_A GTP-binding protein YPT 89.9 0.15 5.2E-06 48.0 2.9 20 28-47 11-30 (182)
346 2ce2_X GTPase HRAS; signaling 89.9 0.14 4.8E-06 47.3 2.6 19 28-46 6-24 (166)
347 1z08_A RAS-related protein RAB 89.9 0.16 5.3E-06 47.3 2.9 19 28-46 9-27 (170)
348 1g16_A RAS-related protein SEC 89.8 0.15 5.1E-06 47.4 2.8 19 28-46 6-24 (170)
349 3q72_A GTP-binding protein RAD 89.8 0.14 4.9E-06 47.3 2.6 18 28-45 5-22 (166)
350 1wms_A RAB-9, RAB9, RAS-relate 89.8 0.15 5.1E-06 47.8 2.8 19 28-46 10-28 (177)
351 3tw8_B RAS-related protein RAB 89.8 0.15 5.1E-06 48.0 2.7 19 28-46 12-30 (181)
352 3e1s_A Exodeoxyribonuclease V, 89.7 0.18 6.2E-06 57.2 3.8 28 23-50 202-229 (574)
353 3q85_A GTP-binding protein REM 89.7 0.15 5.3E-06 47.2 2.8 19 28-46 5-23 (169)
354 1c1y_A RAS-related protein RAP 89.7 0.16 5.3E-06 47.1 2.8 20 28-47 6-25 (167)
355 3lv8_A DTMP kinase, thymidylat 89.7 0.18 6E-06 49.4 3.2 27 25-51 27-53 (236)
356 2nzj_A GTP-binding protein REM 89.6 0.16 5.3E-06 47.5 2.8 19 28-46 7-25 (175)
357 1u8z_A RAS-related protein RAL 89.6 0.17 5.7E-06 46.9 3.0 19 28-46 7-25 (168)
358 2erx_A GTP-binding protein DI- 89.6 0.17 5.7E-06 47.2 2.9 19 28-46 6-24 (172)
359 3tlx_A Adenylate kinase 2; str 89.6 0.18 6.2E-06 50.1 3.3 27 25-51 29-55 (243)
360 1upt_A ARL1, ADP-ribosylation 89.6 0.16 5.5E-06 47.2 2.8 19 28-46 10-28 (171)
361 1sxj_D Activator 1 41 kDa subu 89.5 0.18 6.2E-06 53.8 3.5 24 27-50 60-83 (353)
362 2lkc_A Translation initiation 89.5 0.2 6.8E-06 47.0 3.4 22 25-46 8-29 (178)
363 1v5w_A DMC1, meiotic recombina 89.5 0.2 6.8E-06 52.8 3.6 22 26-47 123-144 (343)
364 1ypw_A Transitional endoplasmi 89.4 0.16 5.3E-06 60.6 3.1 27 25-51 238-264 (806)
365 3zvl_A Bifunctional polynucleo 89.4 0.18 6E-06 54.9 3.2 26 25-50 258-283 (416)
366 3bh0_A DNAB-like replicative h 89.3 0.14 4.9E-06 53.2 2.4 37 10-48 54-91 (315)
367 2dby_A GTP-binding protein; GD 89.2 0.17 5.8E-06 53.4 2.9 21 28-48 4-24 (368)
368 3be4_A Adenylate kinase; malar 89.2 0.2 6.8E-06 48.9 3.2 25 27-51 7-31 (217)
369 4edh_A DTMP kinase, thymidylat 89.2 0.21 7.1E-06 48.2 3.2 25 26-50 7-31 (213)
370 3ld9_A DTMP kinase, thymidylat 89.2 0.2 6.9E-06 48.4 3.1 27 24-50 20-46 (223)
371 2oil_A CATX-8, RAS-related pro 89.2 0.19 6.4E-06 48.0 3.0 20 28-47 28-47 (193)
372 2wsm_A Hydrogenase expression/ 89.1 0.19 6.6E-06 49.2 3.1 25 26-50 31-55 (221)
373 3hws_A ATP-dependent CLP prote 89.1 0.24 8.2E-06 53.0 4.0 29 23-51 49-77 (363)
374 2cxx_A Probable GTP-binding pr 89.0 0.18 6.1E-06 48.0 2.7 19 28-46 4-22 (190)
375 1r2q_A RAS-related protein RAB 89.0 0.2 6.8E-06 46.5 3.0 19 28-46 9-27 (170)
376 2chg_A Replication factor C sm 89.0 0.24 8.3E-06 48.6 3.7 24 26-49 39-62 (226)
377 2r2a_A Uncharacterized protein 89.0 0.21 7.1E-06 47.5 3.0 19 26-44 6-24 (199)
378 2y8e_A RAB-protein 6, GH09086P 89.0 0.18 6.1E-06 47.4 2.6 19 28-46 17-35 (179)
379 3ihw_A Centg3; RAS, centaurin, 88.9 0.2 6.8E-06 47.3 2.9 19 28-46 23-41 (184)
380 4dsu_A GTPase KRAS, isoform 2B 88.9 0.19 6.4E-06 47.7 2.8 19 28-46 7-25 (189)
381 1r8s_A ADP-ribosylation factor 88.9 0.19 6.6E-06 46.3 2.8 20 28-47 3-22 (164)
382 4tmk_A Protein (thymidylate ki 88.9 0.24 8.3E-06 47.7 3.4 25 26-50 4-28 (213)
383 2fn4_A P23, RAS-related protei 88.9 0.18 6.2E-06 47.4 2.6 21 27-47 11-31 (181)
384 3tqf_A HPR(Ser) kinase; transf 88.8 0.2 6.8E-06 45.3 2.5 23 24-46 15-37 (181)
385 3v9p_A DTMP kinase, thymidylat 88.8 0.21 7.2E-06 48.5 3.0 25 26-50 26-50 (227)
386 4b4t_M 26S protease regulatory 88.7 0.28 9.7E-06 52.7 4.2 27 25-51 215-241 (434)
387 3lxw_A GTPase IMAP family memb 88.7 0.21 7.1E-06 49.8 3.0 19 28-46 24-42 (247)
388 1ak2_A Adenylate kinase isoenz 88.7 0.26 9E-06 48.6 3.7 26 26-51 17-42 (233)
389 1m7b_A RND3/RHOE small GTP-bin 88.6 0.2 7E-06 47.3 2.8 20 28-47 10-29 (184)
390 2j37_W Signal recognition part 88.6 0.19 6.5E-06 55.4 2.8 26 25-50 101-126 (504)
391 1g41_A Heat shock protein HSLU 88.6 0.31 1.1E-05 52.5 4.4 29 23-51 48-76 (444)
392 3cbq_A GTP-binding protein REM 88.6 0.17 5.9E-06 48.3 2.3 19 27-45 25-43 (195)
393 4b4t_L 26S protease subunit RP 88.6 0.28 9.7E-06 52.8 4.1 27 25-51 215-241 (437)
394 2xxa_A Signal recognition part 88.6 0.22 7.5E-06 54.0 3.2 26 25-50 100-125 (433)
395 1nrj_B SR-beta, signal recogni 88.6 0.21 7.3E-06 48.8 3.0 22 27-48 14-35 (218)
396 1ofh_A ATP-dependent HSL prote 88.6 0.26 9E-06 51.4 3.8 27 25-51 50-76 (310)
397 3con_A GTPase NRAS; structural 88.6 0.21 7.1E-06 47.5 2.8 20 28-47 24-43 (190)
398 3umf_A Adenylate kinase; rossm 88.5 0.25 8.5E-06 47.6 3.2 27 25-51 29-55 (217)
399 4b4t_K 26S protease regulatory 88.5 0.29 9.9E-06 52.6 4.1 27 25-51 206-232 (428)
400 1d2n_A N-ethylmaleimide-sensit 88.5 0.2 7E-06 51.0 2.8 27 25-51 64-90 (272)
401 3bc1_A RAS-related protein RAB 88.5 0.22 7.5E-06 47.5 3.0 20 28-47 14-33 (195)
402 2hxs_A RAB-26, RAS-related pro 88.5 0.22 7.6E-06 46.6 2.9 19 28-46 9-27 (178)
403 3e2i_A Thymidine kinase; Zn-bi 88.4 0.24 8.1E-06 46.9 2.9 22 25-46 28-50 (219)
404 2xtp_A GTPase IMAP family memb 88.4 0.19 6.5E-06 50.8 2.5 21 26-46 23-43 (260)
405 2bme_A RAB4A, RAS-related prot 88.4 0.21 7E-06 47.3 2.6 19 28-46 13-31 (186)
406 1z0f_A RAB14, member RAS oncog 88.3 0.23 7.9E-06 46.5 3.0 19 28-46 18-36 (179)
407 3syl_A Protein CBBX; photosynt 88.3 0.25 8.5E-06 51.6 3.4 26 26-51 68-93 (309)
408 3kkq_A RAS-related protein M-R 88.3 0.23 8E-06 46.8 3.0 19 28-46 21-39 (183)
409 3p32_A Probable GTPase RV1496/ 88.3 0.23 8E-06 52.7 3.2 24 26-49 80-103 (355)
410 2vf7_A UVRA2, excinuclease ABC 88.3 0.24 8.2E-06 58.3 3.5 45 5-49 15-60 (842)
411 2qgz_A Helicase loader, putati 88.2 0.3 1E-05 50.5 3.8 25 26-50 153-177 (308)
412 2zts_A Putative uncharacterize 88.1 0.28 9.6E-06 49.2 3.6 37 9-46 14-51 (251)
413 1yrb_A ATP(GTP)binding protein 88.1 0.33 1.1E-05 49.1 4.1 26 25-50 14-39 (262)
414 2bov_A RAla, RAS-related prote 88.1 0.24 8.2E-06 47.8 3.0 20 27-46 16-35 (206)
415 1jal_A YCHF protein; nucleotid 88.1 0.23 7.9E-06 52.0 2.9 20 28-47 5-24 (363)
416 4gkw_A Spindle assembly abnorm 88.1 9.7 0.00033 31.1 21.0 9 331-339 21-29 (167)
417 1ksh_A ARF-like protein 2; sma 88.0 0.23 8E-06 46.9 2.8 19 28-46 21-39 (186)
418 3iby_A Ferrous iron transport 88.0 0.22 7.4E-06 49.9 2.6 20 27-46 3-22 (256)
419 2g6b_A RAS-related protein RAB 88.0 0.24 8.1E-06 46.6 2.8 19 28-46 13-31 (180)
420 2ew1_A RAS-related protein RAB 88.0 0.24 8.1E-06 47.6 2.8 20 28-47 29-48 (201)
421 2efe_B Small GTP-binding prote 88.0 0.23 8E-06 46.6 2.7 19 28-46 15-33 (181)
422 2v1u_A Cell division control p 88.0 0.25 8.6E-06 53.6 3.4 26 24-49 43-68 (387)
423 2cjw_A GTP-binding protein GEM 88.0 0.24 8.1E-06 47.2 2.8 19 28-46 9-27 (192)
424 1c9k_A COBU, adenosylcobinamid 88.0 0.24 8.2E-06 45.7 2.6 21 27-47 1-21 (180)
425 2a9k_A RAS-related protein RAL 88.0 0.25 8.6E-06 46.7 3.0 20 27-46 20-39 (187)
426 4b4t_J 26S protease regulatory 88.0 0.35 1.2E-05 51.2 4.2 27 25-51 182-208 (405)
427 3tmk_A Thymidylate kinase; pho 87.9 0.31 1.1E-05 46.9 3.5 27 25-51 5-31 (216)
428 2il1_A RAB12; G-protein, GDP, 87.9 0.24 8.2E-06 47.2 2.8 19 28-46 29-47 (192)
429 2gf9_A RAS-related protein RAB 87.9 0.26 8.7E-06 46.8 3.0 19 28-46 25-43 (189)
430 1vg8_A RAS-related protein RAB 87.9 0.24 8.1E-06 47.9 2.8 19 28-46 11-29 (207)
431 2fg5_A RAB-22B, RAS-related pr 87.9 0.23 7.8E-06 47.3 2.6 19 28-46 26-44 (192)
432 3co5_A Putative two-component 87.8 0.16 5.5E-06 45.5 1.3 24 26-49 28-51 (143)
433 2ius_A DNA translocase FTSK; n 87.7 0.29 1E-05 53.9 3.5 24 26-49 168-191 (512)
434 3t5g_A GTP-binding protein RHE 87.7 0.26 8.8E-06 46.4 2.8 20 27-46 8-27 (181)
435 2o52_A RAS-related protein RAB 87.6 0.24 8.3E-06 47.5 2.6 19 28-46 28-46 (200)
436 1mh1_A RAC1; GTP-binding, GTPa 87.5 0.28 9.5E-06 46.4 3.0 19 28-46 8-26 (186)
437 3t5d_A Septin-7; GTP-binding p 87.5 0.24 8.1E-06 50.4 2.6 18 28-45 11-28 (274)
438 3clv_A RAB5 protein, putative; 87.5 0.27 9.2E-06 47.4 2.9 20 28-47 10-29 (208)
439 3pfi_A Holliday junction ATP-d 87.5 0.33 1.1E-05 51.3 3.8 26 26-51 56-81 (338)
440 2b8t_A Thymidine kinase; deoxy 87.5 0.22 7.6E-06 48.1 2.2 22 24-45 11-32 (223)
441 1jwy_B Dynamin A GTPase domain 87.4 0.28 9.6E-06 51.3 3.2 24 23-46 22-45 (315)
442 3cnl_A YLQF, putative uncharac 87.4 0.26 9E-06 49.4 2.8 20 27-46 101-120 (262)
443 3tkl_A RAS-related protein RAB 87.3 0.27 9.3E-06 47.0 2.8 19 28-46 19-37 (196)
444 1xwi_A SKD1 protein; VPS4B, AA 87.3 0.34 1.2E-05 50.5 3.7 25 25-49 45-69 (322)
445 2gf0_A GTP-binding protein DI- 87.3 0.26 8.7E-06 47.3 2.6 20 28-47 11-30 (199)
446 2a5j_A RAS-related protein RAB 87.2 0.3 1E-05 46.5 3.0 20 28-47 24-43 (191)
447 2hf9_A Probable hydrogenase ni 87.2 0.31 1.1E-05 47.9 3.2 26 25-50 38-63 (226)
448 3eie_A Vacuolar protein sortin 87.2 0.36 1.2E-05 50.5 3.8 27 25-51 51-77 (322)
449 2b6h_A ADP-ribosylation factor 87.2 0.27 9.2E-06 46.8 2.6 19 27-45 31-49 (192)
450 1z06_A RAS-related protein RAB 87.2 0.3 1E-05 46.3 2.9 19 28-46 23-41 (189)
451 3a1s_A Iron(II) transport prot 87.1 0.29 1E-05 49.1 2.9 20 27-46 7-26 (258)
452 2p5s_A RAS and EF-hand domain 87.1 0.29 9.8E-06 46.9 2.8 19 28-46 31-49 (199)
453 2r6f_A Excinuclease ABC subuni 87.1 0.3 1E-05 57.8 3.3 46 4-49 22-68 (972)
454 1zj6_A ADP-ribosylation factor 87.0 0.29 1E-05 46.3 2.8 20 27-46 18-37 (187)
455 3oes_A GTPase rhebl1; small GT 87.0 0.29 9.9E-06 47.0 2.8 20 28-47 27-46 (201)
456 2bcg_Y Protein YP2, GTP-bindin 87.0 0.27 9.3E-06 47.4 2.6 19 28-46 11-29 (206)
457 1ypw_A Transitional endoplasmi 87.0 0.26 8.8E-06 58.7 2.8 27 25-51 511-537 (806)
458 3bwd_D RAC-like GTP-binding pr 87.0 0.31 1.1E-05 45.8 3.0 20 27-46 10-29 (182)
459 1gwn_A RHO-related GTP-binding 86.9 0.3 1E-05 47.1 2.8 20 28-47 31-50 (205)
460 1zd9_A ADP-ribosylation factor 86.9 0.3 1E-05 46.3 2.8 19 28-46 25-43 (188)
461 4a1f_A DNAB helicase, replicat 86.9 0.25 8.6E-06 51.2 2.3 38 10-49 32-70 (338)
462 3pih_A Uvrabc system protein A 86.9 0.32 1.1E-05 57.9 3.5 39 4-42 2-41 (916)
463 1zbd_A Rabphilin-3A; G protein 86.8 0.3 1E-05 46.9 2.8 19 28-46 11-29 (203)
464 2qu8_A Putative nucleolar GTP- 86.7 0.3 1E-05 48.0 2.8 20 27-46 31-50 (228)
465 3dz8_A RAS-related protein RAB 86.6 0.31 1.1E-05 46.3 2.8 20 28-47 26-45 (191)
466 2h17_A ADP-ribosylation factor 86.6 0.28 9.5E-06 46.1 2.4 19 28-46 24-42 (181)
467 3d8b_A Fidgetin-like protein 1 86.6 0.39 1.3E-05 51.1 3.7 27 25-51 117-143 (357)
468 3reg_A RHO-like small GTPase; 86.6 0.33 1.1E-05 46.2 3.0 19 28-46 26-44 (194)
469 2j1l_A RHO-related GTP-binding 86.6 0.31 1.1E-05 47.4 2.7 20 27-46 36-55 (214)
470 3uk6_A RUVB-like 2; hexameric 86.6 0.36 1.2E-05 51.8 3.5 26 26-51 71-96 (368)
471 1um8_A ATP-dependent CLP prote 86.6 0.39 1.3E-05 51.6 3.8 28 24-51 71-98 (376)
472 3cph_A RAS-related protein SEC 86.6 0.33 1.1E-05 47.1 3.0 19 28-46 23-41 (213)
473 3pxg_A Negative regulator of g 86.5 0.38 1.3E-05 53.3 3.7 25 25-49 201-225 (468)
474 2atv_A RERG, RAS-like estrogen 86.5 0.34 1.2E-05 46.3 2.9 20 28-47 31-50 (196)
475 2qp9_X Vacuolar protein sortin 86.5 0.41 1.4E-05 50.7 3.9 26 26-51 85-110 (355)
476 1x3s_A RAS-related protein RAB 86.5 0.32 1.1E-05 46.3 2.8 20 27-46 17-36 (195)
477 3i8s_A Ferrous iron transport 86.5 0.3 1E-05 49.6 2.6 20 27-46 5-24 (274)
478 2h57_A ADP-ribosylation factor 86.4 0.26 8.9E-06 46.8 2.1 20 27-46 23-42 (190)
479 3t1o_A Gliding protein MGLA; G 86.4 0.35 1.2E-05 46.2 3.0 19 28-46 17-35 (198)
480 2dy1_A Elongation factor G; tr 86.3 0.33 1.1E-05 56.3 3.2 25 27-51 11-35 (665)
481 3c5c_A RAS-like protein 12; GD 86.3 0.36 1.2E-05 45.7 2.9 19 28-46 24-42 (187)
482 1hqc_A RUVB; extended AAA-ATPa 86.3 0.37 1.3E-05 50.6 3.4 27 25-51 38-64 (324)
483 2fv8_A H6, RHO-related GTP-bin 86.2 0.34 1.1E-05 46.8 2.7 19 28-46 28-46 (207)
484 3swk_A Vimentin; cytoskeleton, 86.2 10 0.00036 29.6 11.7 34 897-930 46-79 (86)
485 2fu5_C RAS-related protein RAB 86.2 0.23 8E-06 46.8 1.6 19 28-46 11-29 (183)
486 2q3h_A RAS homolog gene family 86.1 0.36 1.2E-05 46.3 3.0 19 28-46 23-41 (201)
487 2bjv_A PSP operon transcriptio 86.1 0.4 1.4E-05 48.5 3.4 27 24-50 28-54 (265)
488 1ic2_A Tropomyosin alpha chain 85.9 10 0.00035 29.2 11.6 76 694-769 4-79 (81)
489 1jr3_A DNA polymerase III subu 85.9 0.42 1.5E-05 51.4 3.7 26 25-50 38-63 (373)
490 2q6t_A DNAB replication FORK h 85.9 0.3 1E-05 53.7 2.5 38 10-49 186-224 (444)
491 1zcb_A G alpha I/13; GTP-bindi 85.8 0.37 1.3E-05 50.8 3.0 38 29-66 37-74 (362)
492 2g3y_A GTP-binding protein GEM 85.8 0.37 1.3E-05 46.5 2.8 18 28-45 40-57 (211)
493 2ocp_A DGK, deoxyguanosine kin 85.7 0.37 1.3E-05 47.9 2.8 27 25-51 2-28 (241)
494 4bas_A ADP-ribosylation factor 85.7 0.37 1.3E-05 46.1 2.7 18 28-45 20-37 (199)
495 2gco_A H9, RHO-related GTP-bin 85.7 0.38 1.3E-05 46.2 2.8 19 28-46 28-46 (201)
496 2iwr_A Centaurin gamma 1; ANK 85.6 0.3 1E-05 45.7 2.0 19 28-46 10-28 (178)
497 2vhj_A Ntpase P4, P4; non- hyd 85.6 0.39 1.3E-05 48.8 2.9 23 25-47 123-145 (331)
498 2fh5_B SR-beta, signal recogni 85.6 0.4 1.4E-05 46.6 3.0 19 28-46 10-28 (214)
499 2z43_A DNA repair and recombin 85.5 0.43 1.5E-05 49.9 3.3 24 24-47 106-129 (324)
500 3te6_A Regulatory protein SIR3 85.5 0.36 1.2E-05 49.6 2.6 26 24-49 44-69 (318)
No 1
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.94 E-value=1.8e-26 Score=224.56 Aligned_cols=174 Identities=34% Similarity=0.585 Sum_probs=139.8
Q ss_pred CeeeEEEEecccccc-cccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc-cccccchhhhhhhhccCCCC--cceEE
Q 001328 1 MHIKQVIIEGFKSYR-EQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLRSEDRHALLHEGAGH--QVLSA 76 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~-~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~~~~~~~~i~~g~~~--~~~~a 76 (1099)
|+|++|+|.||++|. +...+ .|+||+|+|+||||||||||++||.|+||+ .....++....++++.|... +...+
T Consensus 2 M~i~~l~i~nf~~~~~~~~~~-~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (182)
T 3kta_A 2 PYIEKLELKGFKSYGNKKVVI-PFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYA 80 (182)
T ss_dssp CEEEEEEEESBGGGCSSCEEE-ECCSSEEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCE
T ss_pred ceEEEEEEeCeEeecCccEEE-ecCCCcEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceE
Confidence 899999999999995 33344 499999999999999999999999999998 44456666777889887642 23578
Q ss_pred EEEEEEeCCCCCCCCCCccEEEEEEeec-CCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHH
Q 001328 77 FVEIVFDNSDNRIPVDKEEVRLRRTIGL-KKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSER 155 (1099)
Q Consensus 77 ~v~~~f~~~~~~~~~~~~~~~i~R~~~~-~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~ 155 (1099)
.|.++|.+.+..+++.+..++|.|.+.. +.+.|++||.+++..++.+++..+|++.. .+.+++||++..|+.++|.+|
T Consensus 81 ~v~~~f~~~~~~~~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~-~~~~~~qg~~~~l~~~~~~~r 159 (182)
T 3kta_A 81 EVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPD-GYNIVLQGDITKFIKMSPLER 159 (182)
T ss_dssp EEEEEEECTTCCSSSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTT-CTTEECTTCTTHHHHSCHHHH
T ss_pred EEEEEEeCCCcccccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCC-CCEEEEcccHHHHHhCCHHHH
Confidence 9999999988877777788999999854 56789999999999999999999999874 456899999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHH
Q 001328 156 LDLLKEIGGTRVYEERRRESL 176 (1099)
Q Consensus 156 ~~~lee~~g~~~~~~~~~e~~ 176 (1099)
+.+|+.++|+..|..+++++.
T Consensus 160 ~~~ld~~~g~~~~~~~~~~~~ 180 (182)
T 3kta_A 160 RLLIDDISGIAEYDSKKEKAL 180 (182)
T ss_dssp HHHHHHHHTC-----------
T ss_pred HHHHHHHHChHHHHHHHHHHh
Confidence 999999999999998777654
No 2
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=99.93 E-value=9.4e-26 Score=220.35 Aligned_cols=178 Identities=16% Similarity=0.337 Sum_probs=136.3
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|+|++|.|.||++|.+.+ + +|+||+|+|+||||||||||++||.|+||+. ...++....++++.|.. .++|++
T Consensus 1 M~i~~l~i~nf~~~~~~~-i-~f~~~~~~I~G~NgsGKStil~ai~~~l~g~-~~~r~~~~~~~i~~~~~----~~~v~l 73 (203)
T 3qks_A 1 MKLERVTVKNFRSHSDTV-V-EFKEGINLIIGQNGSGKSSLLDAILVGLYWP-LRIKDIKKDEFTKVGAR----DTYIDL 73 (203)
T ss_dssp CEEEEEEEESBTTBSSEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHTT-SCCTTCCHHHHHTSCSS----CEEEEE
T ss_pred CEEEEEEEECCcCccceE-E-EeCCCeEEEEcCCCCCHHHHHHHHHHHhcCC-cccccccchhhhccCCC----cEEEEE
Confidence 999999999999999865 4 4999999999999999999999999999993 33455566789988765 689999
Q ss_pred EEeCCCCCCCCCCccEEEEEEeecC----CC---eEEeCCee--c---CHHHHHHHHHHc-CCCCCCCceeecCchHhHh
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTIGLK----KD---EYFLDGKH--I---TKTEVMNLLESA-GFSRSNPYYVVQQGKIASL 147 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~~~~----~~---~~~in~~~--~---~~~~~~~l~~~~-g~~~~~~~~~i~qg~i~~~ 147 (1099)
+|.+. +..+.|.|.+..+ .+ .|..||.. + ..+++.+.+..+ |++.+...++++||++..|
T Consensus 74 ~f~~~-------~~~~~i~R~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~i~~ll~~~~f~~~~~l~Qg~~~~~ 146 (203)
T 3qks_A 74 IFEKD-------GTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAI 146 (203)
T ss_dssp EEEET-------TEEEEEEEEEECSSSCEEEEEEEEEETTEEEESSCSSHHHHHHHHHHHSCHHHHHHTTEECTTHHHHH
T ss_pred EEEEC-------CEEEEEEEEEEcCCCCCccceEEEEcCCceeeeccCChHHHHHHHHHHcCHHHhhEEEEEcCCcHHHH
Confidence 99875 4566999999443 22 26678732 2 456888777754 3322223468999999999
Q ss_pred hcCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 148 TLMKDSERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVV 193 (1099)
Q Consensus 148 ~~~~~~~~~~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~~ 193 (1099)
+.++ .+|+.+|++++|+..|....+.+...+......+..++..+
T Consensus 147 l~~~-~er~~~l~~i~g~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 191 (203)
T 3qks_A 147 LESD-EAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRDIL 191 (203)
T ss_dssp HHCH-HHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCc-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 99999999999999998776666555555555555544433
No 3
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.89 E-value=2.6e-23 Score=231.08 Aligned_cols=173 Identities=25% Similarity=0.400 Sum_probs=118.3
Q ss_pred CeeeEEEEecccccccccccccCC-CCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCc-------
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFS-PQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQ------- 72 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~-~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~------- 72 (1099)
|+|++|.|.||++|.+.+.+ .|+ +++|+|+||||||||||++||.|++++....+|+..+.++|+.|....
T Consensus 2 m~i~~l~~~~~~~~~~~~~~-~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~~~R~~~~~~lI~~g~~~~~~~~~~~ 80 (430)
T 1w1w_A 2 GRLVGLELSNFKSYRGVTKV-GFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKDLIYRGVLNDENSDDYD 80 (430)
T ss_dssp CCEEEEEEESCSSCCSEEEE-ECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---------CGGGSCCC-----------
T ss_pred CeeEEEEEeCEEEECCceeE-EecCCCEEEEECCCCCCHHHHHHHHHhhhccccccchhhhHHHHHhcCCccceeeEEec
Confidence 89999999999999876655 476 689999999999999999999999998556678888999999986311
Q ss_pred --------ceEEEEEEEEeCCCCCCCCCCccEEEEEEee-cCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCch
Q 001328 73 --------VLSAFVEIVFDNSDNRIPVDKEEVRLRRTIG-LKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGK 143 (1099)
Q Consensus 73 --------~~~a~v~~~f~~~~~~~~~~~~~~~i~R~~~-~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~ 143 (1099)
...++|...|... +..+.|.|.+. .+.+.|++||++++..++..++...|+.....+++++||+
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~-------~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~ 153 (430)
T 1w1w_A 81 NEGAASSNPQSAYVKAFYQKG-------NKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGD 153 (430)
T ss_dssp --------CCEEEEEEEEEET-------TEEEEEEEEEETTSCEEEEETTEEECHHHHHHHHHHTTCCTTTCTTEECTTC
T ss_pred ccccccCCcccccceeeeccC-------CcEEEEEEEEecCCceEEEECCEEccHHHHHHHHHhCCcCCCCcceeeehHh
Confidence 1246666666532 34678888884 4567899999999999999999888887666778999999
Q ss_pred HhHhhcCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q 001328 144 IASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQD 181 (1099)
Q Consensus 144 i~~~~~~~~~~~~~~lee~~g~~~~~~~~~e~~~~l~~ 181 (1099)
+..|+.++|.+|+.+|++++|+..|...+.++...+..
T Consensus 154 ~~~l~~~~p~eRr~~ld~~~g~~~~~~~~~~~~~~~~~ 191 (430)
T 1w1w_A 154 VEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEK 191 (430)
T ss_dssp TTHHHHSCHHHHHHTC----------------------
T ss_pred HHHHHhCCHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999988776665544433
No 4
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=1.7e-22 Score=214.35 Aligned_cols=154 Identities=27% Similarity=0.514 Sum_probs=115.7
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc-cccccchhhhhhhhccCCC--CcceEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD-IFQNLRSEDRHALLHEGAG--HQVLSAF 77 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~-~~~~~~~~~~~~~i~~g~~--~~~~~a~ 77 (1099)
|+|++|+|.||++|.+...+ +|+||+|+|+||||||||||++||.|++|+ ..+..|+....++|+.|.. .+...++
T Consensus 1 M~l~~L~i~nfr~~~~~~~l-~~~~g~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~ 79 (322)
T 1e69_A 1 MRLKKLYLKGFKSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAY 79 (322)
T ss_dssp CEEEEEEEESBTTBCSCEEE-ECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEE
T ss_pred CeEeEEEEeCceeecCCeEE-ecCCCcEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEE
Confidence 99999999999999766666 599999999999999999999999999988 5566788788899998874 3446899
Q ss_pred EEEEEeCCCCCCCCCCccEEEEEEee-cCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHH
Q 001328 78 VEIVFDNSDNRIPVDKEEVRLRRTIG-LKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERL 156 (1099)
Q Consensus 78 v~~~f~~~~~~~~~~~~~~~i~R~~~-~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~ 156 (1099)
|+++|++.+ .++.|.|.+. .+.+.|++||.+++..++..++...|+.. ..+.++.||.|..++.++|.+|+
T Consensus 80 v~~~f~~~~-------~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~-~~~~lv~qg~i~~~~~~~p~~rr 151 (322)
T 1e69_A 80 VELVFEENG-------EEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGV-DFYSIVGQGQIDRIVNASPEELR 151 (322)
T ss_dssp EEEEEESSS-------CEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTT-TCCSEEEHHHHHHHHTC------
T ss_pred EEEEEEeCC-------eEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCCh-hheeeEehhhHHHHHhccHHHHH
Confidence 999998764 4679999874 44578999999999999999998888885 56788999999999999999999
Q ss_pred HHHHHhc
Q 001328 157 DLLKEIG 163 (1099)
Q Consensus 157 ~~lee~~ 163 (1099)
.+++...
T Consensus 152 ~~ld~~~ 158 (322)
T 1e69_A 152 LESSKHP 158 (322)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 9988753
No 5
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.87 E-value=8.2e-22 Score=213.59 Aligned_cols=176 Identities=22% Similarity=0.373 Sum_probs=134.2
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|+|.+|+|.||++|.+. .+ .|+||+|+|+||||||||||+|||.|+|++. .|+....++|+.|.. .|.|++
T Consensus 3 M~l~~L~l~nFr~~~~~-~i-~f~~gl~vi~G~NGaGKT~ileAI~~~l~g~---~r~~~~~~~ir~g~~----~~~V~~ 73 (371)
T 3auy_A 3 MILKEIRMNNFKSHVNS-RI-KFEKGIVAIIGENGSGKSSIFEAVFFALFGA---GSNFNYDTIITKGKK----SVYVEL 73 (371)
T ss_dssp EEEEEEEEEEETTEEEE-EE-ECCSEEEEEEECTTSSHHHHHHHHHHHHHCC---C-CCCTTTTBCTTCS----EEEEEE
T ss_pred cEEeEEEEEccccccce-EE-ecCCCeEEEECCCCCCHHHHHHHHHHHHcCC---CCccchHhhccCCCC----cEEEEE
Confidence 89999999999999765 45 4999999999999999999999999988774 233445688998875 799999
Q ss_pred EEeCCCCCCCCCCccEEEEEEeecCC--CeEEeCCeecC--HHHHHHHHHH-cCCCC--CCCceeecCchHhHhhcCCHH
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTIGLKK--DEYFLDGKHIT--KTEVMNLLES-AGFSR--SNPYYVVQQGKIASLTLMKDS 153 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~~~~~--~~~~in~~~~~--~~~~~~l~~~-~g~~~--~~~~~~i~qg~i~~~~~~~~~ 153 (1099)
+|.+.+ ..+.|.|....|. +.+++||.+++ ..++...+.. +|++. +.+..+++||++..++..+|.
T Consensus 74 ~f~~~~-------~~~~i~r~~~~g~~~~~~~~ng~~~~~~~~~~~~~l~~i~gl~~~~f~~~v~~~qg~~~~~~~~~~~ 146 (371)
T 3auy_A 74 DFEVNG-------NNYKIIREYDSGRGGAKLYKNGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPS 146 (371)
T ss_dssp EEEETT-------EEEEEEEEEETTEEEEEEEETTEEEECSHHHHHHHHHHHHCSCHHHHHHHHEECTTHHHHHHHSCHH
T ss_pred EEEECC-------EEEEEEEEEcCCCCceEEEECCEeecccHHHHHHHHHHHhCcCHHHhCceeeecCccHHHHHhcCHH
Confidence 998653 3557877643322 34789998874 3577776654 67763 123468999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 154 ERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQV 192 (1099)
Q Consensus 154 ~~~~~lee~~g~~~~~~~~~e~~~~l~~~~~~~~~~~~~ 192 (1099)
+|+.+|+.++|...|......+...+.+....+..+...
T Consensus 147 ~Rr~~ld~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 185 (371)
T 3auy_A 147 EKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGE 185 (371)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888776666666655555554444333
No 6
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=99.87 E-value=2.2e-22 Score=184.72 Aligned_cols=134 Identities=22% Similarity=0.456 Sum_probs=101.8
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|+|++|+|.||++|.+.+ + +|+||+|+|+||||||||||++||.|+|++... .++....++++.|.. .++|++
T Consensus 1 M~i~~l~i~nf~~~~~~~-i-~f~~g~~~I~G~NGsGKStil~Ai~~~l~g~~~-~r~~~~~~~~~~~~~----~~~v~~ 73 (149)
T 1f2t_A 1 MKLERVTVKNFRSHSDTV-V-EFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR-IKDIKKDEFTKVGAR----DTYIDL 73 (149)
T ss_dssp CEEEEEEEESBTTBSSEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHCSSC-CTTSSCCCSCSTTCC----CEEEEE
T ss_pred CEEEEEEEeCcccCcceE-E-EcCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-cccCCHHHheecCCC----cEEEEE
Confidence 999999999999998864 4 499999999999999999999999999977322 244455678887764 689999
Q ss_pred EEeCCCCCCCCCCccEEEEEEeec--CCCeEE--eC--C---eec--CH-HHHHHHHHHcCCCCCCCc---eeecCchHh
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTIGL--KKDEYF--LD--G---KHI--TK-TEVMNLLESAGFSRSNPY---YVVQQGKIA 145 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~~~--~~~~~~--in--~---~~~--~~-~~~~~l~~~~g~~~~~~~---~~i~qg~i~ 145 (1099)
+|++. +..+.|.|.+.. +.+.|+ +| | .++ +. +++.+.+..+ ++. ..| .+++||++.
T Consensus 74 ~f~~~-------~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l-l~~-~~f~~~~~i~QG~~~ 144 (149)
T 1f2t_A 74 IFEKD-------GTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPY-NIFLNAIYIRQGQID 144 (149)
T ss_dssp EEEET-------TEEEEEEEEECCC----EEEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCH-HHHHHHTEECTTHHH
T ss_pred EEEEC-------CEEEEEEEEEcCCCCceEEEEEeccCCCceEEcccCchHHHHHHHHHH-cCH-HHhhheEEEcCcCHH
Confidence 99764 356799999853 345566 56 6 333 35 7888888776 653 223 689999999
Q ss_pred HhhcC
Q 001328 146 SLTLM 150 (1099)
Q Consensus 146 ~~~~~ 150 (1099)
.|+.+
T Consensus 145 ~~l~~ 149 (149)
T 1f2t_A 145 AILES 149 (149)
T ss_dssp HHTCC
T ss_pred HHhhC
Confidence 98764
No 7
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.83 E-value=1e-18 Score=198.38 Aligned_cols=138 Identities=15% Similarity=0.242 Sum_probs=109.6
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|+|.+|.|.||++|.+.++. |+||+|+|+|+||||||||++||.|++|+.+. .++|+.|.. .|+|++
T Consensus 38 M~l~~L~i~nf~~~~~~~l~--f~~g~n~i~G~NGaGKS~lleAl~~llg~r~~-------~~~i~~g~~----~a~v~~ 104 (517)
T 4ad8_A 38 PRLSRLEIRNLATITQLELE--LGGGFCAFTGETGAGKSIIVDALGLLLGGRAN-------HDLIRSGEK----ELLVTG 104 (517)
T ss_dssp CCCCEEEEESBTTBSCEEEE--CCCSEEEEEESHHHHHHHHTHHHHHHTCSCCC-------GGGBCTTCS----EEEEEE
T ss_pred ceeeeeecccccceeeEEEe--cCCCeEEEEcCCCCCHHHHHHHHHHHhcCCcH-------HHHhcCCCC----cEEEEE
Confidence 89999999999999876544 99999999999999999999999999998432 478998887 799999
Q ss_pred EE-eCCCCCCCCCCccEEEEEEee-cCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHHHH
Q 001328 81 VF-DNSDNRIPVDKEEVRLRRTIG-LKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDL 158 (1099)
Q Consensus 81 ~f-~~~~~~~~~~~~~~~i~R~~~-~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~~~ 158 (1099)
+| ++++ +..+.|+|.+. .+.+.|++||.+++..++.++... .+.+++|+. .+....|..++.+
T Consensus 105 ~f~~~~~------~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~~~-------li~i~~q~~--~~~l~~~~~rr~~ 169 (517)
T 4ad8_A 105 FWGDGDE------SEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQG-------RLTIHWQHS--AVSLLSPANQRGL 169 (517)
T ss_dssp EC--------------CEEEEEEETTSCCEEESSSSBCCHHHHHHHHTT-------TEEEESGGG--GGTTTSHHHHHHH
T ss_pred EEEecCC------CCeEEEEEEEecCCCcEEEECCEECCHHHHHHHhhh-------heEEeCCch--HHhcCCHHHHHHH
Confidence 99 7652 34568999984 567899999999999888887532 245666764 4555699999999
Q ss_pred HHHhcChH
Q 001328 159 LKEIGGTR 166 (1099)
Q Consensus 159 lee~~g~~ 166 (1099)
|+..++..
T Consensus 170 LD~~~~~~ 177 (517)
T 4ad8_A 170 LDRRVTKE 177 (517)
T ss_dssp HHTSSHHH
T ss_pred HHHHhCcc
Confidence 99887654
No 8
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=99.83 E-value=3.8e-20 Score=171.55 Aligned_cols=149 Identities=26% Similarity=0.391 Sum_probs=127.2
Q ss_pred HHHHHHHHcCCCccccccccccccchhhHHHHHHhhccCcceEEecCchHHHHHHHHHhhcCCCeeEEEeCCCCCCCCCC
Q 001328 511 SIRRICREYKIDGVYGPIIELLDCDEKFFTAVEVTAGNSLFHVVVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKAPRVT 590 (1099)
Q Consensus 511 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~aie~~l~~~l~~~vv~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 590 (1099)
.+.+.....+++|++|++++++.++++|+.||+.++| .++++||++..+|..++++|++.+.||+||+|++.++.+...
T Consensus 6 ~l~~~~~~~~~~Gv~G~v~dLi~v~~~y~~Aie~alg-~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpL~~i~~~~~~ 84 (166)
T 3l51_B 6 AIIQEKKSGRIPGIYGRLGDLGAIDEKYDIAISSCCH-ALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMTVWAKK 84 (166)
T ss_dssp HHHHHHHHTSSTTEEEEGGGSCBCCGGGHHHHHHHCG-GGGSEEESCHHHHHHHHHHHHHTTCCCCCEEEGGGTGGGTTS
T ss_pred HHHHHHHhCCCCCceEEHHHheeeCHHHHHHHHHHHh-hCceEEECCHHHHHHHHHHHHHcCCCeEEEEECccccccccc
Confidence 3444445566789999999999999999999999998 899999999999999999999999999999999987643321
Q ss_pred C---CCccccccccccccc-CcchHHHHHHhccCeEEecChHHHHHHHHh--cCCcEEecCCCcccCCcceecccc
Q 001328 591 Y---PKSNDVIPLLDRLEF-SPNFKPAFAQVFARTVICRDLDVCTRVART--DGLDCITLEGDQVSKKGGMTGGFY 660 (1099)
Q Consensus 591 ~---~~~~~~~~~~~~i~~-~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~--~~~~~vt~~g~~~~~~g~~~g~~~ 660 (1099)
. ..+.+..++.++|.+ ++.+.+++.++||++++|++++.|..++.. ++.++||++|++++++|.|+||+.
T Consensus 85 ~~~~~~~~~~~~a~dlv~~~d~~~~~a~~~llg~tlVv~dl~~A~~~~~~~~~~~r~VTldGdli~~~G~~tGG~~ 160 (166)
T 3l51_B 85 MSKIQTPENTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGTMSGGLE 160 (166)
T ss_dssp CCCCCCGGGCCBHHHHCBCSCHHHHHHHHHHHTTCEEESSHHHHHHHHBCSSCBCCEEETTSCEECTTCCEEECCG
T ss_pred ccccccccchhhHhheeeCCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhhCCCcEEEECCCEEEeCCEEEECCCc
Confidence 1 122344456799999 579999999999999999999999988764 678999999999999999999975
No 9
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=99.81 E-value=2.1e-19 Score=177.56 Aligned_cols=163 Identities=44% Similarity=0.853 Sum_probs=131.9
Q ss_pred CCccccccccccccchhhHHHHHHhhccCcceEEecCchHHHHHHHHHhhcC-CCeeEEEeCCCCCCCCCCCCCcccccc
Q 001328 521 IDGVYGPIIELLDCDEKFFTAVEVTAGNSLFHVVVDNDETSTKIIRHLNSLK-GGRVTFIPLNRVKAPRVTYPKSNDVIP 599 (1099)
Q Consensus 521 ~~~~~~~l~~~i~~~~~~~~aie~~l~~~l~~~vv~~~~~a~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~ 599 (1099)
++|++|++++++.++++|..||+.++|+.++++||++..++..++.+++..+ .|+++|+|++.+.++....+..+++.+
T Consensus 46 ~~g~~g~l~dli~v~~~~e~Ave~aLG~~l~~iVV~~~~~a~~~i~~l~~~~~~gr~tflpl~~~~~~~~~~~~~~~~~~ 125 (213)
T 2wd5_B 46 QNGYHGIVMNNFECEPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDTAYPETNDAIP 125 (213)
T ss_dssp HTTEEEEGGGSEECCGGGHHHHHHHHTTGGGCEEESCHHHHHHHHHHHHHTTCCCCEEEEETTTCCCCCCCCCCCSSEEE
T ss_pred CCCceeeHHHhcccCHHHHHHHHHHHhHHhhEEEECCHHHHHHHHHHHHhCCCCcceEEEECcccCcccCCCCCCCCcee
Confidence 4689999999999999999999999999999999999999999999999887 999999999886654322232356777
Q ss_pred cccccccCcchHHHHHHhccCeEEecChHHHHHHHHhcCCcEEecCCCcccCCcceecccccccchhHHHHHHHHHHHHH
Q 001328 600 LLDRLEFSPNFKPAFAQVFARTVICRDLDVCTRVARTDGLDCITLEGDQVSKKGGMTGGFYDYRRSKLKFMNIIMRNTKT 679 (1099)
Q Consensus 600 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~vt~~g~~~~~~g~~~g~~~~~~~~~~~~~~~l~~l~~~ 679 (1099)
+.+.|.+++.+.+++.++||++++|++++.|..+...++.++||++|++++++|.++||+.....+.+.+.+++..++.+
T Consensus 126 l~~~v~~~~~~~~~~~~~l~~~~vv~~l~~A~~l~~~~~~~~VTldG~~~~~~G~~tgG~~~~~~~~l~~~~~l~~l~~~ 205 (213)
T 2wd5_B 126 MISKLRYNPRFDKAFKHVFGKTLICRSMEVSTQLARAFTMDCITLEGDQVSHRGALTGGYYDTRKSRLELQKDVRKAEEE 205 (213)
T ss_dssp GGGGCEECGGGHHHHHHHHTTEEEESSHHHHHHHHHHSSCEEECTTCCEECTTSCEEECCCCCC---HHHHHHHHHHC--
T ss_pred HHHHccCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCceEEeCCCcEECCCeEEECCCCCCCccHhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999988777789999999999999999998754434566666655555555
Q ss_pred HHHH
Q 001328 680 INAR 683 (1099)
Q Consensus 680 ~~~l 683 (1099)
+..+
T Consensus 206 l~~~ 209 (213)
T 2wd5_B 206 LGEL 209 (213)
T ss_dssp ----
T ss_pred HHHH
Confidence 4443
No 10
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=99.79 E-value=4.1e-19 Score=166.62 Aligned_cols=137 Identities=29% Similarity=0.529 Sum_probs=122.9
Q ss_pred CCCccccccccccccchh-hHHHHHHhhccCcceEEecCchHHHHHHHHHhhcCCCeeEEEeCCCCCCCCCCCCCccccc
Q 001328 520 KIDGVYGPIIELLDCDEK-FFTAVEVTAGNSLFHVVVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKAPRVTYPKSNDVI 598 (1099)
Q Consensus 520 ~~~~~~~~l~~~i~~~~~-~~~aie~~l~~~l~~~vv~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 598 (1099)
.++|++|++++++.++++ |..||+.++|+.++++||++..++..++++|+..+.||+||+|++.+.++. .+..+++.
T Consensus 32 ~~~gv~G~l~dLi~V~~~kye~Ave~aLG~~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpl~~i~~~~--~~~~~g~~ 109 (189)
T 3nwc_A 32 GIGGIYGTLAELIKVKDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLKEHKLGRLTFLPLNKIKPKH--VDSSVGLP 109 (189)
T ss_dssp CCCSEEEEHHHHCEESCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHTTCCCCCEEETTTCCCCC--CCSCSSEE
T ss_pred CCCCceEEHHHheeeChhhHHHHHHHHhccccccEEECCHHHHHHHHHHHHhcCCCceEEEECCcccccc--CCCCCCcE
Confidence 468999999999999888 999999999999999999999999999999999999999999999886643 23345666
Q ss_pred ccccccccCcchHHHHHHhccCeEEecChHHHHHHHHhcCCcEEecCCCcccCCcceeccccc
Q 001328 599 PLLDRLEFSPNFKPAFAQVFARTVICRDLDVCTRVARTDGLDCITLEGDQVSKKGGMTGGFYD 661 (1099)
Q Consensus 599 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~vt~~g~~~~~~g~~~g~~~~ 661 (1099)
+.++|.+++.+.+++.++||++++|++++.|..+. .+.++||++|+++.++|.|+||+..
T Consensus 110 -a~dlv~~d~~~~~a~~~llg~tlvv~dl~~A~~l~--~~~r~VTldGd~i~~~G~~tGG~~~ 169 (189)
T 3nwc_A 110 -AVDVIEYDQKIENAVKFALGDTVIVNSMEEARPHI--GKVRMVTIEGELYERSGAITGGHFR 169 (189)
T ss_dssp -GGGGEECCGGGHHHHHHHHTTEEEESCSGGGGGGT--TTSEEEETTSCEECTTSCEECSCSS
T ss_pred -EeeeeccCHHHHHHHHHHhCCEEEECCHHHHHHHh--CCCeEEeCCCcEEECCEEEEeCCCC
Confidence 77999999999999999999999999999998773 2789999999999999999998753
No 11
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.79 E-value=9.3e-20 Score=194.68 Aligned_cols=155 Identities=18% Similarity=0.361 Sum_probs=113.9
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|+|++|+|.||++|.+.+ + .|+||+|+|+||||||||||++||.|+|++ +...++....++++.|.. .++|.+
T Consensus 1 M~i~~l~l~nF~~~~~~~-i-~f~~~~~~i~G~NGsGKS~lleAi~~~l~~-~~~~~~~~~~~~~~~~~~----~~~v~~ 73 (339)
T 3qkt_A 1 MKLERVTVKNFRSHSDTV-V-EFKEGINLIIGQNGSGKSSLLDAILVGLYW-PLRIKDIKKDEFTKVGAR----DTYIDL 73 (339)
T ss_dssp CEEEEEEEEEETTEEEEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHC-SCCCTTCCHHHHBCTTCS----EEEEEE
T ss_pred CeEEEEEEEcccCccCeE-E-cCCCCeEEEECCCCCCHHHHHHHHHHHhcC-CcccCcCCHHHHhcCCCC----eEEEEE
Confidence 999999999999999865 4 499999999999999999999999999988 334455556788888865 799999
Q ss_pred EEeCCCCCCCCCCccEEEEEEeecC----CCeEE---eCCeec-----CHHHHHHHHHH-cCCCCCCCceeecCchHhHh
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTIGLK----KDEYF---LDGKHI-----TKTEVMNLLES-AGFSRSNPYYVVQQGKIASL 147 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~~~~----~~~~~---in~~~~-----~~~~~~~l~~~-~g~~~~~~~~~i~qg~i~~~ 147 (1099)
+|.+.+ ..+.|.|++..+ ...++ +++..+ ...++...+.. .+.+.+...++++||++..+
T Consensus 74 ~~~~~~-------~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l~~~~~f~~~~~i~Qg~~~~i 146 (339)
T 3qkt_A 74 IFEKDG-------TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAI 146 (339)
T ss_dssp EEEETT-------EEEEEEEEEETTCTTSCEEEEEEEETTEEEESSCSSHHHHHHHHHHHSCHHHHHHHTEECTTCTTGG
T ss_pred EEEECC-------EEEEEEEEEecCCCCCcceEEEEecCCceeeccccchHHHHHHHHHhcCHHHhhhheEecchhHHHH
Confidence 998764 345888888432 22222 244322 23344443321 22221122457999999999
Q ss_pred hcCCHHHHHHHHHHhcChHHHHH
Q 001328 148 TLMKDSERLDLLKEIGGTRVYEE 170 (1099)
Q Consensus 148 ~~~~~~~~~~~lee~~g~~~~~~ 170 (1099)
+. .|.+|+.+++.++|+..|+.
T Consensus 147 l~-~~~eR~~ll~~l~~~~~~~~ 168 (339)
T 3qkt_A 147 LE-SDEAREKVVREVLNLDKFET 168 (339)
T ss_dssp GS-CTTHHHHHHHHHHTTCTTHH
T ss_pred Hh-ChHHHHHHHHHHhCchhHHH
Confidence 86 58999999999999999854
No 12
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=99.75 E-value=2.3e-17 Score=164.10 Aligned_cols=165 Identities=22% Similarity=0.378 Sum_probs=133.4
Q ss_pred CCCccccccccccccchhhHHHHHHhhccCcceEEecCchHHHHHHHHHhhcCCCeeEEEeCCCCCCCCC--C-CCCccc
Q 001328 520 KIDGVYGPIIELLDCDEKFFTAVEVTAGNSLFHVVVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKAPRV--T-YPKSND 596 (1099)
Q Consensus 520 ~~~~~~~~l~~~i~~~~~~~~aie~~l~~~l~~~vv~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~~~~--~-~~~~~~ 596 (1099)
.+++++|++++++.++++|..||+.++|+.++++||++..++..++.+|+....|+++|+|++.+.++.. . ...+++
T Consensus 40 ~~~g~~g~l~~li~v~~~~e~Ave~aLg~~l~~ivv~~~~~a~~~i~~lk~~~~gr~~~lpl~~~~~~~~~~~~~~~~~g 119 (213)
T 1gxl_A 40 RFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERG 119 (213)
T ss_dssp SCTTEEEEGGGTCBCCHHHHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCEEEEEEETTTSCCCCCCCTTGGGSTT
T ss_pred hhCCCceehhheeeeCHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCceEEEEchhcCCCCccchhhhcCCC
Confidence 4678899999999999999999999999999999999999999999999999999999999987654321 0 111245
Q ss_pred ccc-cccccccCcchHHHHHHhccCeEEecChHHHHHHHHh--cCCcEEecCCCcccCCcceecccccccchhHHHHHHH
Q 001328 597 VIP-LLDRLEFSPNFKPAFAQVFARTVICRDLDVCTRVART--DGLDCITLEGDQVSKKGGMTGGFYDYRRSKLKFMNII 673 (1099)
Q Consensus 597 ~~~-~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~--~~~~~vt~~g~~~~~~g~~~g~~~~~~~~~~~~~~~l 673 (1099)
+.+ +.++|.+++.+.+++.++||++++|++++.|..+... ++.++||++|++++++|.++||+.....+++.+.+++
T Consensus 120 ~~~~~~d~v~~~~~~~~~~~~~lg~~~vv~~l~~A~~~~~~~~~~~~~VT~~G~~~~~~G~~~gg~~~~~~~~l~~~~el 199 (213)
T 1gxl_A 120 FVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVFERRIKL 199 (213)
T ss_dssp EEEEGGGGCBCCSTTHHHHHHHSSSEEEESSHHHHHHHHHHTCSSCEEECTTSCEECTTSCEEECCCSSCCCTTHHHHHH
T ss_pred cHHHHHHHhcCCHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEecCCeEEcCCceEECCCCccccchhhHHHHH
Confidence 444 4599999988999999999999999999999988765 5678999999999999999988753344566666666
Q ss_pred HHHHHHHHHHH
Q 001328 674 MRNTKTINARE 684 (1099)
Q Consensus 674 ~~l~~~~~~l~ 684 (1099)
..++.++..++
T Consensus 200 ~~l~~~l~~~~ 210 (213)
T 1gxl_A 200 KHLEQEMEETE 210 (213)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHHH
Confidence 66665555443
No 13
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=99.74 E-value=4.7e-18 Score=169.27 Aligned_cols=140 Identities=23% Similarity=0.458 Sum_probs=120.7
Q ss_pred CCc-ccccccccccc-chhhHHHHHHhhccCcceEEecCchHHHHHHHHHhhcCCCeeEEEeCCCCCCCCCC--CCCccc
Q 001328 521 IDG-VYGPIIELLDC-DEKFFTAVEVTAGNSLFHVVVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKAPRVT--YPKSND 596 (1099)
Q Consensus 521 ~~~-~~~~l~~~i~~-~~~~~~aie~~l~~~l~~~vv~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~~ 596 (1099)
++| ++|++++++.+ +++|..||+.++|+.++++||++..++..++.+|+..+.|+++|+|++.+.++... .+.+++
T Consensus 51 ~~g~v~G~l~dli~v~~~~ye~Ave~aLG~~l~~iVV~~~~~a~~~i~~Lk~~~~Gr~tflpl~~i~~~~~~~~~~~~~g 130 (233)
T 2wd5_A 51 YPGSVYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELKG 130 (233)
T ss_dssp SGGGEEEEHHHHEEESSGGGHHHHHHHHGGGGSCEEESCHHHHHHHHHHHHHTTCCCEEEEETTTCCCCCCCGGGGGCSS
T ss_pred CCCCeeeeHHHhceeCcHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCCeEEEECcccccCCcchhccCCCC
Confidence 468 89999999997 69999999999999999999999999999999999999999999999887533221 122245
Q ss_pred cccccccccc-CcchHHHHHHhccCeEEecChHHHHHHHHh--cCCcEEecCCCcccCCcceecccc
Q 001328 597 VIPLLDRLEF-SPNFKPAFAQVFARTVICRDLDVCTRVART--DGLDCITLEGDQVSKKGGMTGGFY 660 (1099)
Q Consensus 597 ~~~~~~~i~~-~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~--~~~~~vt~~g~~~~~~g~~~g~~~ 660 (1099)
+.++.++|.+ ++.+.+++.++||++++|++++.|..+... ++.++||++|++++++|.++||+.
T Consensus 131 ~~~l~dlV~~~~~~~~~~~~~~Lg~~~vv~dl~~A~~l~~~~~~~~r~VTldG~~~~~~G~~tGG~~ 197 (233)
T 2wd5_A 131 AKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGAS 197 (233)
T ss_dssp CEESGGGEEESSGGGHHHHHHHTTTCEEESSHHHHHHHHHSSSSCCCEEETTCCEECTTSCEEECHH
T ss_pred chHHHHhhhCCcHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEecCCEEEeCCeeEeCCCc
Confidence 5567799999 699999999999999999999999988864 467899999999999999998864
No 14
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=99.74 E-value=9.7e-18 Score=154.99 Aligned_cols=135 Identities=30% Similarity=0.501 Sum_probs=112.4
Q ss_pred Cccccccccccccc-hhhHHHHHHhhccCcceEEecCchHHHHHHHHHhhcCCCeeEEEeCCCCCCCCCCC---------
Q 001328 522 DGVYGPIIELLDCD-EKFFTAVEVTAGNSLFHVVVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKAPRVTY--------- 591 (1099)
Q Consensus 522 ~~~~~~l~~~i~~~-~~~~~aie~~l~~~l~~~vv~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~--------- 591 (1099)
+|++|++++++.++ ++|..||+.++|+.++++||++..+|..+++++ ...||+||+|++.+..+....
T Consensus 15 ~gv~G~v~dLi~v~d~~y~~Ave~alG~~l~~iVVd~~~~A~~~i~~~--~~~GR~tflpL~~i~~~~~~~~~~~~~~~~ 92 (161)
T 3l51_A 15 NSVKGLVASLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLEKG--ELKRRYTIIPLNKISARCIAPETLRVAQNL 92 (161)
T ss_dssp GGEEEEGGGSCEESCGGGHHHHHHHHGGGGGCEEESCHHHHHHHHHHS--CCSSCEEEEETTTCCCCCCCHHHHHHHHHH
T ss_pred CccEEEHHHheeeCchhHHHHHHHHhccccceEEECCHHHHHHHHHHH--hhCCcEEEEECccccccCcCHHHHhhhhhc
Confidence 68999999999994 899999999999999999999999999999986 467999999999887654321
Q ss_pred CCcccccccccccccCcchHHHHHHhccCeEEecChHHHHHHHHhc--CCcEEecCCCcccCCcceecc
Q 001328 592 PKSNDVIPLLDRLEFSPNFKPAFAQVFARTVICRDLDVCTRVARTD--GLDCITLEGDQVSKKGGMTGG 658 (1099)
Q Consensus 592 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~--~~~~vt~~g~~~~~~g~~~g~ 658 (1099)
..+.++.++.++|.+++.+.+++.++||++++|++++.|..+++.. +.++||++|++++++|.|+||
T Consensus 93 ~~~~~~~~a~dlv~~d~~~~~a~~~llg~tlv~~dl~~A~~~~~~~~~~~r~VTldGd~i~~~G~~tGG 161 (161)
T 3l51_A 93 VGPDNVHVALSLVDYKPELQKGMEFVFGTTFVCNNMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGG 161 (161)
T ss_dssp HCTTSEEEGGGGEECCGGGHHHHHHHHTTCEEESSHHHHHHHHHCTTTCCCEEETTSCEECCC------
T ss_pred CCCcchhHHHHHhcCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCCeEEeCCCeEEcCCEEEecC
Confidence 1123455667999999999999999999999999999999988753 589999999999999999986
No 15
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.70 E-value=2.8e-16 Score=168.47 Aligned_cols=153 Identities=20% Similarity=0.274 Sum_probs=108.4
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|+|.+|++.||++|.+.++. |++|+++|+||||||||||++||.|+|++....... ..+.+..+++ ...++|++
T Consensus 1 M~~~~l~~~~f~~~~~~~i~--~~~g~~~i~G~NGaGKTTll~ai~~al~g~~~r~~~--~~~~~~~~~~--~~~~~v~~ 74 (365)
T 3qf7_A 1 MRPERLTVRNFLGLKNVDIE--FQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPN--SYDYVNRNAV--DGTARLVF 74 (365)
T ss_dssp CEEEEEEEEEETTEEEEEEE--CCSEEEEEECCTTSSHHHHHHHHHHHHHSCCSSCSS--GGGGBCTTCT--TCEEEEEE
T ss_pred CeeEEEEEeCccCccceEEe--cCCCeEEEECCCCCCHHHHHHHHHHHhcCCcccccC--cchhhhccCC--CCcEEEEE
Confidence 99999999999999987544 999999999999999999999999999883222111 1122222221 23688999
Q ss_pred EEeCCCCCCCCCCccEEEEEEeecCC-----CeE--EeCCeec----CHHHHHHHHH-HcCCCC--CCCceeecCchHhH
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTIGLKK-----DEY--FLDGKHI----TKTEVMNLLE-SAGFSR--SNPYYVVQQGKIAS 146 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~~~~~-----~~~--~in~~~~----~~~~~~~l~~-~~g~~~--~~~~~~i~qg~i~~ 146 (1099)
.|...+ ..+.|.|.+.... ..+ ..||..+ ...++...+. .+|++. +....+++||.+..
T Consensus 75 ~f~~~g-------~~y~v~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~i~~~lgl~~~~f~~~v~l~Qg~~~~ 147 (365)
T 3qf7_A 75 QFERGG-------KRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQGEIDK 147 (365)
T ss_dssp EEEETT-------EEEEEEEEEETTTTEEEEEEEEECTTSCEEEEEESHHHHHHHHHHHHTSCHHHHHHHTEECTTCTTT
T ss_pred EEEECC-------EEEEEEEEEeccCCCCccEEEEEcCCCceeecccChHHHHHHHHHHHCCCHHHhceEEEEcccchHH
Confidence 997654 4558888773211 112 2344322 4455655444 567763 22467899999999
Q ss_pred hhcCCHHHHHHHHHHhcChH
Q 001328 147 LTLMKDSERLDLLKEIGGTR 166 (1099)
Q Consensus 147 ~~~~~~~~~~~~lee~~g~~ 166 (1099)
++.++|.+|+.+|+.+++..
T Consensus 148 ~l~~~~~~r~~~l~~lf~~~ 167 (365)
T 3qf7_A 148 LLISPPSEITEIISDVFQSK 167 (365)
T ss_dssp TTTSCHHHHHHHHHHHTSCH
T ss_pred HHhcChhhHHHHHHHHHhhH
Confidence 99999999999999999864
No 16
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.69 E-value=2e-16 Score=166.65 Aligned_cols=137 Identities=17% Similarity=0.230 Sum_probs=107.1
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|+|++|.|.||++|.+..+. |++|+|+|+||||||||||++||.+++++. .|.....++|+.|++ .+.|.+
T Consensus 4 M~i~~L~l~~~~~~~~~~~~--~~~g~~~i~G~nG~GKttll~ai~~~~~g~---~R~~~~~~lI~~g~~----~~~V~~ 74 (359)
T 2o5v_A 4 VRLSALSTLNYRNLAPGTLN--FPEGVTGIYGENGAGKTNLLEAAYLALTGQ---TDAPRIEQLIQAGET----EAYVRA 74 (359)
T ss_dssp CCEEEEEEESBTTCCSEEEE--CCSEEEEEECCTTSSHHHHHHHHHHHHHSC---CCCSSGGGGBCTTCS----CEEEEE
T ss_pred cEEeEEEEeCccceeeeEEE--EcCCeEEEECCCCCChhHHHHHHHHhccCC---CCCCCHHHHhccCCC----cEEEEE
Confidence 89999999999999876654 999999999999999999999999887653 666677889998886 589999
Q ss_pred EEeCCCCCCCCCCccEEEEEEeecCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHHHHHH
Q 001328 81 VFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLK 160 (1099)
Q Consensus 81 ~f~~~~~~~~~~~~~~~i~R~~~~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~~~le 160 (1099)
.|.+.++ .+.|...+..++..+.+||.+++.. ++ .|+ +..++.+++. .++..+|.+|+.+++
T Consensus 75 ~~~~~~~-------~~~i~~~~~~~~~~~~ing~~~~~~---~l---~gl----~~v~~~p~d~-~li~g~p~~RR~flD 136 (359)
T 2o5v_A 75 DLQQGGS-------LSIQEVGLGRGRRQLKVDGVRARTG---DL---PRG----GAVWIRPEDS-ELVFGPPSGRRAYLD 136 (359)
T ss_dssp EEEETTE-------EEEEEEEEETTEEEEEETTEEECGG---GC---CSC----CEEEECTTTT-HHHHSCHHHHHHHHH
T ss_pred EEecCCc-------eEEEEEEEECCceEEEECCeEcCHH---HH---hCc----hheEECcccH-hhhcCCHHHHHHHHH
Confidence 9986543 3355555544435789999998732 22 231 2566777764 678899999999999
Q ss_pred HhcC
Q 001328 161 EIGG 164 (1099)
Q Consensus 161 e~~g 164 (1099)
.+.+
T Consensus 137 ~~l~ 140 (359)
T 2o5v_A 137 SLLS 140 (359)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 9854
No 17
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Probab=99.68 E-value=2.8e-16 Score=151.72 Aligned_cols=149 Identities=26% Similarity=0.446 Sum_probs=124.8
Q ss_pred HHHHHHHc-CCCccccccccccccchhhHHHHHHhhccCcceEEecCchHHHHHHHHHhhcCCCeeEEEeCCCCCCCCC-
Q 001328 512 IRRICREY-KIDGVYGPIIELLDCDEKFFTAVEVTAGNSLFHVVVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKAPRV- 589 (1099)
Q Consensus 512 ~~~~~~~~-~~~~~~~~l~~~i~~~~~~~~aie~~l~~~l~~~vv~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~~~~- 589 (1099)
++.++... .+++++|++++++.++++|+.||+.++|+.++++||++..++..++.+|+..+.|+++|+|++.+.++..
T Consensus 19 ~~~~l~~~~~~~g~~g~l~~li~v~~~~e~Ave~aLG~~l~~ivv~~~~~a~~~i~~lk~~~~gr~tflpl~~~~~~~~~ 98 (186)
T 1gxj_A 19 VRAVFEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNR 98 (186)
T ss_dssp HHHHHHTGGGCTTEEEEHHHHCBCCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCCCCCC
T ss_pred HHHHHHhhhhhCCcceehhheeccCHHHHHHHHHHHHHhhhEEEECCHHHHHHHHHHHHhcCCCceEEEEccccCCCccc
Confidence 34444332 4578899999999999999999999999999999999999999999999999999999999988654321
Q ss_pred -C-CCCccccccc-ccccccCcchHHHHHHhccCeEEecChHHHHHHHHh--cCCcEEecCCCcccCCcceecccc
Q 001328 590 -T-YPKSNDVIPL-LDRLEFSPNFKPAFAQVFARTVICRDLDVCTRVART--DGLDCITLEGDQVSKKGGMTGGFY 660 (1099)
Q Consensus 590 -~-~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~--~~~~~vt~~g~~~~~~g~~~g~~~ 660 (1099)
. ...+.++.++ .++|.+++.+.+++.++||++++|++++.|..+... ++.++||++|++++++|.++||+.
T Consensus 99 ~~~~~~~~g~~~~~~dlv~~~~~~~~~~~~~lg~~~v~~~l~~A~~l~~~~~~~~~~VTldG~~~~~~G~~~gG~~ 174 (186)
T 1gxj_A 99 ISGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGRE 174 (186)
T ss_dssp CTTGGGSTTEEEEHHHHCBCCGGGHHHHHHHHTTCEEESCHHHHHHHHHHHTCCSCEEETTSCEECTTSCEEEEEC
T ss_pred chhcccCCCchHHHHHHccCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCceEEeCCCeEEcCCEEEECCCC
Confidence 0 1112454444 589999999999999999999999999999988765 678999999999999999998864
No 18
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.66 E-value=1.6e-17 Score=162.37 Aligned_cols=161 Identities=14% Similarity=0.133 Sum_probs=105.4
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccch--hhhhhhhcc--CC-C---Cc
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRS--EDRHALLHE--GA-G---HQ 72 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~--~~~~~~i~~--g~-~---~~ 72 (1099)
|+|.+|.+.||++|.+. .+ .|.+++++|+||||||||||++||.|++++..+.+.. ....+.... +. . ..
T Consensus 5 ~k~~~l~l~~~~~~~~~-~~-~~~~~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 82 (227)
T 1qhl_A 5 GKFRSLTLINWNGFFAR-TF-DLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLK 82 (227)
T ss_dssp CEEEEEEEEEETTEEEE-EE-CHHHHHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBC
T ss_pred ceeeEEEEEeeecccCC-EE-EEcCcEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhh
Confidence 89999999999999877 45 4888999999999999999999999999874332211 111000000 00 0 01
Q ss_pred ceEEEEEEEEeCCCCCCCCCCccEEEEEEee----------------cC-CCe-----EEeC------CeecCHHHHHHH
Q 001328 73 VLSAFVEIVFDNSDNRIPVDKEEVRLRRTIG----------------LK-KDE-----YFLD------GKHITKTEVMNL 124 (1099)
Q Consensus 73 ~~~a~v~~~f~~~~~~~~~~~~~~~i~R~~~----------------~~-~~~-----~~in------~~~~~~~~~~~l 124 (1099)
...++|...+.+. ..+ ++.+.|++. .+ ... ++++ +.+++.+++.+.
T Consensus 83 ~~i~~v~~~~~~~-~~~-----~v~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~dv~~~ 156 (227)
T 1qhl_A 83 AGVCYSMLDTINS-RHQ-----RVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDK 156 (227)
T ss_dssp SSEEEEEEEEECT-TSC-----EEEEEEEEEECSSTTTCEEEEEEEEESCCTTCCHHHHHEECCSSSCCEECCHHHHHHH
T ss_pred cCcEEEEEeeeCC-eEE-----EEEEEecCHHHhccccccccceeecCCcccccccceEEEEecCCCceeecCHHHHHHH
Confidence 2345555544332 222 233223321 11 121 4443 357889999999
Q ss_pred HHHc-CCCCC--CCc-----eeecCchHhHhhcCCHHHHHHHHHHhcChHHHHHH
Q 001328 125 LESA-GFSRS--NPY-----YVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEER 171 (1099)
Q Consensus 125 ~~~~-g~~~~--~~~-----~~i~qg~i~~~~~~~~~~~~~~lee~~g~~~~~~~ 171 (1099)
+..+ |++.. ... .+++||.+..|+.+ |.+|+. |++++|+..|...
T Consensus 157 i~~~lGl~~~~F~~~~~y~~v~l~QG~f~~fL~a-~~eR~~-l~~l~~~~~y~~~ 209 (227)
T 1qhl_A 157 LEAMEGVQFKQFNSITDYHSLMFDLGIIARRLRS-ASDRSK-FYRLIEASLYGGI 209 (227)
T ss_dssp HHTSTTCEEEECSCHHHHHHHHHHTTSBSSCCCS-HHHHHH-HHHHHHHHHSSSC
T ss_pred HHHHHCCCHHHhcCccccceEEeccchHHHhhcC-HHHHHH-HHHHHCcHHHHHH
Confidence 9854 88742 223 68999999999999 889999 9999999998644
No 19
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.55 E-value=2.9e-14 Score=158.86 Aligned_cols=137 Identities=15% Similarity=0.242 Sum_probs=105.5
Q ss_pred CeeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhccCCCCcceEEEEEE
Q 001328 1 MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEI 80 (1099)
Q Consensus 1 M~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~~g~~~~~~~a~v~~ 80 (1099)
|+|.+|.|.||+.|.+.++. |+||+|+|+||||||||||++||.+++|+.+ ..++|+.|.. .++|+.
T Consensus 38 m~l~~L~i~nf~~l~~v~l~--~~~G~~~lvG~NGaGKStLl~aI~~l~~~~~-------~~~~i~~g~~----~~~v~~ 104 (415)
T 4aby_A 38 PRLSRLEIRNLATITQLELE--LGGGFCAFTGETGAGKSIIVDALGLLLGGRA-------NHDLIRSGEK----ELLVTG 104 (415)
T ss_dssp CCCCEEEEEEETTEEEEEEE--CCSSEEEEEESHHHHHHHHTHHHHHHTTCCC-------CGGGBCTTCS----EEEEEE
T ss_pred cEeeeehhccccceeeEEEe--cCCCcEEEECCCCCCHHHHHHHHHHHhCCCc-------cHHHhcCCCC----eEEEEE
Confidence 88999999999999887765 9999999999999999999999999998842 2478888887 788999
Q ss_pred EE-eCCCCCCCCCCccEEEEEEee-cCCCeEEeCCeecCHHHHHHHHHHcCCCCCCCceeecCchHhHhhcCCHHHHHHH
Q 001328 81 VF-DNSDNRIPVDKEEVRLRRTIG-LKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDL 158 (1099)
Q Consensus 81 ~f-~~~~~~~~~~~~~~~i~R~~~-~~~~~~~in~~~~~~~~~~~l~~~~g~~~~~~~~~i~qg~i~~~~~~~~~~~~~~ 158 (1099)
.| .+.+ +..+.+.|.+. .+.+.+++||.+++..++.++... ...+++|.. .+....|..++.+
T Consensus 105 ~~~~~~~------~~~~~l~r~~~~~~~~~i~ing~~~~~~~~~~~~~~-------~i~~~~q~~--~l~l~~~~~~r~~ 169 (415)
T 4aby_A 105 FWGDGDE------SEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQG-------RLTIHWQHS--AVSLLSPANQRGL 169 (415)
T ss_dssp EC--------------CEEEEEEETTSCEEEEETTEEECHHHHHHHHTT-------TEEEETTTC--TTTTSSHHHHHHH
T ss_pred EEEecCC------CceEEEEEEEecCCceEEEECCEECCHHHHHHHHhh-------ceEEecCcc--cccccCHHHHHHH
Confidence 98 6542 34568888884 557889999999998888877532 245666764 2333478889999
Q ss_pred HHHhcCh
Q 001328 159 LKEIGGT 165 (1099)
Q Consensus 159 lee~~g~ 165 (1099)
++...+.
T Consensus 170 ld~~~~~ 176 (415)
T 4aby_A 170 LDRRVTK 176 (415)
T ss_dssp HHTTCHH
T ss_pred HHHHhcc
Confidence 8887654
No 20
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.97 E-value=1.1e-09 Score=136.19 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=15.8
Q ss_pred cEEEEcCCCCChhHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAI 45 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai 45 (1099)
..+|.|.+|||||.-..-|
T Consensus 171 ~i~isGeSGaGKTe~~k~~ 189 (1184)
T 1i84_S 171 SILCTGESGAGKTENTKKV 189 (1184)
T ss_dssp EEECCCSTTSSTTHHHHHH
T ss_pred EEEEecCCCCCccHHHHHH
Confidence 4578999999999877665
No 21
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.95 E-value=1.3e-09 Score=135.47 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=13.0
Q ss_pred HHHHHHHcCCCCC-----CCceeecCchHhHhh
Q 001328 121 VMNLLESAGFSRS-----NPYYVVQQGKIASLT 148 (1099)
Q Consensus 121 ~~~l~~~~g~~~~-----~~~~~i~qg~i~~~~ 148 (1099)
...++..++++.. ....|+..|.+..+-
T Consensus 752 ~~~lL~~l~l~~~~~~iG~TKVF~r~g~l~~LE 784 (1184)
T 1i84_S 752 CILMIKALELDPNLYRIGQSKIFFRTGVLAHLE 784 (1184)
T ss_dssp HHHHHHTTTCCTTTCCBCSSEEEECTTHHHHHH
T ss_pred HHHHHHHcCCCccceeEcCeEEEEechHHHHHH
Confidence 3445555555421 223455556554443
No 22
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.71 E-value=2.1e-08 Score=93.18 Aligned_cols=61 Identities=26% Similarity=0.519 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEEeeccCCCCCCCCCCCCCCCCccCCccccccceEEEEecCCCcc
Q 001328 1008 LDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHGDDDDDDGPRESDVEGRVEKYIGVKVKACTSVKMN 1087 (1099)
Q Consensus 1008 l~~~~~~~~~~~f~~in~~f~~~f~~lf~gG~a~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~i~~~ppgk~~ 1087 (1099)
+++++.+.|..+|+.||.+|.++|+.||+||.|.|.+ .+|++ .+. +||+|.|+||||..
T Consensus 1 ~~~~~~~~f~~~f~~i~~~f~~~f~~L~~~g~~~l~l--------~~~~~-----------~~~--~gl~i~~~~~~~~~ 59 (173)
T 3kta_B 1 MEKEKKNVFMRTFEAISRNFSEIFAKLSPGGSARLIL--------ENPED-----------PFS--GGLEIEAKPAGKDV 59 (173)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE--------SCSSS-----------GGG--SCEEEEEETTSSSC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEe--------eCCCC-----------ccc--cCceEEecCCCccc
Confidence 4678889999999999999999999999999999999 56555 233 89999999999987
Q ss_pred ce
Q 001328 1088 SF 1089 (1099)
Q Consensus 1088 ~~ 1089 (1099)
.+
T Consensus 60 ~~ 61 (173)
T 3kta_B 60 KR 61 (173)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 23
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.87 E-value=0.0062 Score=60.81 Aligned_cols=66 Identities=11% Similarity=0.150 Sum_probs=31.0
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001328 313 QERISGNSQARDDAKKQLRSLLEEIDDSSKELDKANTLYENKCIEEKKITKDIMEREKQLSILYQK 378 (1099)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 378 (1099)
..++..+......+-.++..+...+..+...+..+...+..+..++..++..+......+......
T Consensus 17 D~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~ 82 (256)
T 3na7_A 17 DKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKK 82 (256)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444445444444444444444444445555555555444444444433
No 24
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.80 E-value=1.5e-05 Score=86.95 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=40.6
Q ss_pred eeeEEEEecccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 2 HIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 2 ~i~~l~l~~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
++.+|.+.||..+.+.+.. +.+.+++|+|||||||||++.+|.-++..
T Consensus 8 ~l~~l~~~~~~~l~~vsl~--i~~e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 8 KFRSLTLINWNGFFARTFD--FDELVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp EEEEEEEEEETTEEEEEEE--CCSSEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceeEEEEeccccccceEEE--EccceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3678899999999877655 66689999999999999999999877754
No 25
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.68 E-value=2e-05 Score=76.48 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3499999999999999999886544
No 26
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.67 E-value=1.7e-05 Score=80.11 Aligned_cols=44 Identities=30% Similarity=0.430 Sum_probs=29.7
Q ss_pred EEEecc-ccccccccccc----CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 6 VIIEGF-KSYREQIATEP----FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 6 l~l~~f-~sf~~~~~~~~----f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|++.|. ++|.+..++.+ +.+| +++|+|||||||||++.+|.-.+
T Consensus 8 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 8 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 566663 34544332211 3344 89999999999999999986554
No 27
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.65 E-value=1.8e-05 Score=78.04 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=22.1
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334 489999999999999999886444
No 28
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.64 E-value=2e-05 Score=87.12 Aligned_cols=96 Identities=24% Similarity=0.416 Sum_probs=32.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------CceEE
Q 001328 971 KKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQ---------GGHGH 1041 (1099)
Q Consensus 971 ~~a~ee~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~~~~~f~~in~~f~~~f~~lf~---------gG~a~ 1041 (1099)
..|.++|+.+..++.++..++.++......+...+..++......|..+|+.|+.+|..+|..|++ ||.|.
T Consensus 224 ~~a~ee~e~l~e~l~~l~~~l~~~r~~~~~l~~~i~~L~~~r~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~ 303 (430)
T 1w1w_A 224 GPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNAS 303 (430)
T ss_dssp ------------------------------------------------CHHHHHHHHHHHHHHTC-----------CEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccCCCceEE
Confidence 447788999999999999999999999999999999999999999999999999999999999984 89999
Q ss_pred EEEeeccCCCCCCCCCCCCCCCCccCCccccccceEEEEecCCCcc
Q 001328 1042 LVMMKKKDGDHGDDDDDDGPRESDVEGRVEKYIGVKVKACTSVKMN 1087 (1099)
Q Consensus 1042 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~i~~~ppgk~~ 1087 (1099)
|.+ .|+++ .+. .||.+.+.|||++.
T Consensus 304 l~~--------~d~~~-----------~~~--~g~~~~~~~~~~~~ 328 (430)
T 1w1w_A 304 LTI--------EDEDE-----------PFN--AGIKYHATPPLKRF 328 (430)
T ss_dssp EC---------------------------------CEEEECTTCCC
T ss_pred EEe--------cCCCC-----------ccc--CceEEEEECCCccc
Confidence 988 33332 123 79999999999965
No 29
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.63 E-value=0.012 Score=58.72 Aligned_cols=39 Identities=10% Similarity=-0.008 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 334 LEEIDDSSKELDKANTLYENKCIEEKKITKDIMEREKQL 372 (1099)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 372 (1099)
...+..+...+..+...+..+...+..+...+...+..+
T Consensus 45 ~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 45 NKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444444444444444
No 30
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.62 E-value=7.7e-06 Score=79.14 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=26.0
Q ss_pred ccccccccccCCC-CcEEEEcCCCCChhHHHHHHHHH
Q 001328 13 SYREQIATEPFSP-QVNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 13 sf~~~~~~~~f~~-~~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+|.+...+.++.+ .+++|+|||||||||++.+|.-.
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3444333333444 48999999999999999999755
No 31
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.61 E-value=2.3e-05 Score=79.21 Aligned_cols=27 Identities=33% Similarity=0.658 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4454 89999999999999999886554
No 32
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.61 E-value=2.3e-05 Score=78.84 Aligned_cols=27 Identities=30% Similarity=0.613 Sum_probs=22.4
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4454 89999999999999999886554
No 33
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.60 E-value=3.8e-05 Score=70.34 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.8
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3555 88999999999999999998777
No 34
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.58 E-value=2.7e-05 Score=78.10 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455 89999999999999999886544
No 35
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.57 E-value=2.9e-05 Score=77.47 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=22.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3354 89999999999999999886544
No 36
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.56 E-value=2.9e-05 Score=78.47 Aligned_cols=44 Identities=16% Similarity=0.330 Sum_probs=29.3
Q ss_pred EEEecc-ccccccccccc----CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 6 VIIEGF-KSYREQIATEP----FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 6 l~l~~f-~sf~~~~~~~~----f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|++.|+ ++|.+..++.+ +.+ .+++|+|||||||||++.+|.-.+
T Consensus 12 l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 12 LEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 555553 34544432211 334 589999999999999999887554
No 37
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.56 E-value=3.5e-05 Score=77.44 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.0
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.+| +++|+|||||||||++.+|.-.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3354 8999999999999999998754
No 38
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.54 E-value=3.6e-05 Score=78.00 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=30.0
Q ss_pred EEEec-cccccccc-ccc----cCCCC-cEEEEcCCCCChhHHHHHHHHHhc
Q 001328 6 VIIEG-FKSYREQI-ATE----PFSPQ-VNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 6 l~l~~-f~sf~~~~-~~~----~f~~~-~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
|++.| .++|.+.. .+. .+.+| +++|+|||||||||++.+|.-.+.
T Consensus 8 l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 66666 34564322 221 13344 899999999999999998865553
No 39
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.53 E-value=3.4e-05 Score=77.01 Aligned_cols=27 Identities=22% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4454 89999999999999999876444
No 40
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.50 E-value=5.3e-05 Score=75.27 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4444 89999999999999999886444
No 41
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.49 E-value=4.3e-05 Score=77.82 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.2
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 334 489999999999999999886544
No 42
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.48 E-value=4.6e-05 Score=77.23 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=22.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.+| +++|+|||||||||++.+|.-.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4454 8999999999999999998755
No 43
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.48 E-value=4.7e-05 Score=76.41 Aligned_cols=27 Identities=22% Similarity=0.440 Sum_probs=22.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344 89999999999999999886444
No 44
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.47 E-value=4.5e-05 Score=79.81 Aligned_cols=44 Identities=23% Similarity=0.418 Sum_probs=29.8
Q ss_pred EEEec-ccccccccccc----cCCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 6 VIIEG-FKSYREQIATE----PFSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 6 l~l~~-f~sf~~~~~~~----~f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|++.| -++|.+...+. .+.+ .+++|+|||||||||++.+|.-.+
T Consensus 5 l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 55666 34555443221 1334 489999999999999999887554
No 45
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.46 E-value=5.5e-05 Score=75.65 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999986544
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.45 E-value=4.2e-05 Score=78.16 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=21.9
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 445 489999999999999999875443
No 47
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.44 E-value=5.5e-05 Score=75.67 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455 88999999999999999986544
No 48
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.43 E-value=6.3e-05 Score=71.56 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=24.0
Q ss_pred cCCCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 22 PFSPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 22 ~f~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
||.+.+.+|+||||||||||+.+|.-.+
T Consensus 2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 2 SHMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5777899999999999999999986554
No 49
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.43 E-value=5.5e-05 Score=79.97 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=29.5
Q ss_pred EEEecc-cccccccccc----cCCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 6 VIIEGF-KSYREQIATE----PFSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 6 l~l~~f-~sf~~~~~~~----~f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|++.|. ++|.+...+. .+.+ .+++|+|||||||||++.+|.-.+
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 566663 4554432221 1334 589999999999999999987544
No 50
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.42 E-value=7e-05 Score=74.03 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3488999999999999999886443
No 51
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.42 E-value=6.1e-05 Score=79.43 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=30.0
Q ss_pred EEEec-ccccccccccc----cCCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 6 VIIEG-FKSYREQIATE----PFSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 6 l~l~~-f~sf~~~~~~~----~f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|++.| -++|.+...+. .+.+ .+++|+|||||||||++.+|.-.+
T Consensus 4 l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 56666 34565443221 1334 589999999999999999987444
No 52
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.41 E-value=7.3e-05 Score=75.90 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=22.5
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+||||||||||+.+|.-.+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4454 89999999999999999886554
No 53
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.39 E-value=7.9e-05 Score=78.43 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
..+++|+|||||||||++.+|.-.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3589999999999999999987443
No 54
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.39 E-value=7.9e-05 Score=78.06 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
..+++|+|||||||||++.+|.-.+
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3599999999999999999887433
No 55
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.39 E-value=6.8e-05 Score=78.81 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3589999999999999999987444
No 56
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.37 E-value=0.039 Score=50.10 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhH
Q 001328 233 HDARQKLLEVDDTRTRFSDESA 254 (1099)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~ 254 (1099)
..+...+..+...+..+.....
T Consensus 20 ~~~~q~~~~le~El~EFqesSr 41 (189)
T 2v71_A 20 MKYKQSFQEARDELVEFQEGSR 41 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 57
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.36 E-value=8.7e-05 Score=74.86 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=22.1
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 445 489999999999999999986443
No 58
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.36 E-value=7.9e-05 Score=73.31 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=21.5
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+||||||||||+..|.-.+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 444 488999999999999999986544
No 59
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.35 E-value=9.1e-05 Score=78.52 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=29.4
Q ss_pred EEEecc-cccccccccc--c--CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 6 VIIEGF-KSYREQIATE--P--FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 6 l~l~~f-~sf~~~~~~~--~--f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|++.|. ++|.+...+. + +.+ .+++|+|||||||||++.+|.-.+
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 566663 4554433221 1 334 589999999999999999887443
No 60
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.34 E-value=8.1e-05 Score=73.83 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=22.4
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 445 489999999999999999886544
No 61
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.33 E-value=0.00013 Score=72.34 Aligned_cols=27 Identities=22% Similarity=0.472 Sum_probs=23.0
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+.+++|+|||||||||++.+|.-.+
T Consensus 22 i~~e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGRDYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECSSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 434899999999999999999987555
No 62
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.32 E-value=0.00011 Score=74.58 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.3
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +++|+|||||||||++.+|.-.+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4454 89999999999999999886444
No 63
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.27 E-value=7.1e-05 Score=78.80 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=22.2
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344 599999999999999999987444
No 64
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.24 E-value=0.00014 Score=68.37 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCCChhHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHA 44 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~a 44 (1099)
+.+++|+|||||||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34899999999999999996
No 65
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.24 E-value=0.0001 Score=77.22 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=21.6
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.+ .+++|+|||||||||++.+|.-.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 344 59999999999999999988633
No 66
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.24 E-value=0.11 Score=47.14 Aligned_cols=7 Identities=0% Similarity=-0.016 Sum_probs=2.5
Q ss_pred HHHhHHH
Q 001328 345 DKANTLY 351 (1099)
Q Consensus 345 ~~~~~~~ 351 (1099)
..+...+
T Consensus 133 eD~e~kl 139 (189)
T 2v71_A 133 EDFEQRL 139 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 67
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.23 E-value=0.00014 Score=70.98 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3489999999999999999997665
No 68
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.22 E-value=0.00014 Score=69.67 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
|.+.+|+|||||||||++.+|.-.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35789999999999999999976553
No 69
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.21 E-value=0.00015 Score=70.85 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+||||||||||+.+|.-.+
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4588999999999999999987554
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.20 E-value=0.00016 Score=68.02 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.9
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
..+|+|||||||||++..|.-.++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 468999999999999999976664
No 71
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.16 E-value=0.11 Score=45.70 Aligned_cols=38 Identities=11% Similarity=-0.024 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 336 EIDDSSKELDKANTLYENKCIEEKKITKDIMEREKQLS 373 (1099)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 373 (1099)
....+.....++...+..+......++.++..++..+.
T Consensus 42 ~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 42 SISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444
No 72
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.15 E-value=0.0002 Score=72.12 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=24.1
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+| +.+|+|||||||||++..|.-.+|.
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 4555 7889999999999999999877764
No 73
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.13 E-value=0.00018 Score=69.45 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+||||||||||+..|.-.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999985433
No 74
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.11 E-value=0.00021 Score=76.06 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
..+++|+|||||||||++.+|.-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 35889999999999999998863
No 75
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.09 E-value=0.00023 Score=71.65 Aligned_cols=27 Identities=37% Similarity=0.552 Sum_probs=22.8
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+.+++|+|||||||||++.+|.-.+
T Consensus 28 i~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VNGEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp ECSSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 454499999999999999999987555
No 76
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.09 E-value=0.00023 Score=69.75 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+.+|+|||||||||++..|.-.+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4588999999999999999986554
No 77
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.08 E-value=0.00017 Score=74.03 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=21.8
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+||||||||||+.+|.-.+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 344 488999999999999998885444
No 78
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.08 E-value=0.00027 Score=66.85 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=24.0
Q ss_pred cCCCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 22 PFSPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 22 ~f~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+|.+.+.+|+||+|||||||+.+|.-.+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4777899999999999999999986443
No 79
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.06 E-value=0.00021 Score=80.26 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=27.4
Q ss_pred cccccccccccccCCCCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 10 GFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 10 ~f~sf~~~~~~~~f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+|+-|+=++. -...+++|+|||||||||++.+|.-.+-.
T Consensus 13 ~f~l~~l~~~---~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 13 GFKLFGLPTP---KNNTILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp SCEEECCCCC---CTTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred ceeecCCCCC---CCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3555543321 23348999999999999999998765533
No 80
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.04 E-value=0.00026 Score=71.30 Aligned_cols=26 Identities=23% Similarity=0.283 Sum_probs=22.0
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.++++|+|||||||||++.+|.-.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 34689999999999999999986544
No 81
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.02 E-value=0.00013 Score=77.89 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=27.2
Q ss_pred eEEEEeccccccccc----ccccCCCCc---EEEEcCCCCChhHHHHHHHH
Q 001328 4 KQVIIEGFKSYREQI----ATEPFSPQV---NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 4 ~~l~l~~f~sf~~~~----~~~~f~~~~---~~I~G~NGsGKS~i~~ai~~ 47 (1099)
..|.+.|.++|.+.. .+ .+.+|. ++|+||||||||||+.+|.-
T Consensus 15 ~~l~~~~~~~y~~~~L~~vsl-~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 15 RTVPLAGHVGFDSLPDQLVNK-SVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp --CCCCCCC-CC--CHHHHHH-SCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred ceEEEeeEEEECCeecCCCce-EecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 345667777776532 11 245664 68999999999999999853
No 82
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.97 E-value=0.00033 Score=68.50 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+++|+|||||||||++.+|.-.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34888999999999999999977764
No 83
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.92 E-value=0.00036 Score=73.01 Aligned_cols=27 Identities=26% Similarity=0.588 Sum_probs=22.1
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++.+|.-.+
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 344 489999999999999999887444
No 84
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.92 E-value=0.00046 Score=65.44 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
.+++|+|||||||||++..|...+-
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4689999999999999999977763
No 85
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.92 E-value=0.00038 Score=68.45 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+.+|+|||||||||++..|.-.++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34788999999999999999987776
No 86
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.89 E-value=2.7 Score=56.97 Aligned_cols=93 Identities=13% Similarity=0.208 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Q 001328 396 QKEIDDLERVHSSNLKQDQKLQEEIQRLKGDLKERDEYIESRKREIAYLESSISQSREGFNNHKTQRDKMQDERKSLWVK 475 (1099)
Q Consensus 396 ~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1099)
+.++..++.++......+...+..+..++..++.++.+.+....+...++.++..+...+..+..-+..+..+...+...
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence 34444444444444444444444555555555555555555445555555555555554444444555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 001328 476 ESELCAEIDKLKA 488 (1099)
Q Consensus 476 ~~~~~~~l~~l~~ 488 (1099)
...+..++..+-.
T Consensus 2093 ~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A 2093 SENFNTQMSTVVG 2105 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccH
Confidence 5555555544443
No 87
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.84 E-value=0.00057 Score=69.87 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=23.7
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+++ .+++|+||||||||||+.+|.-.+.|
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G 152 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGG 152 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTC
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCc
Confidence 445 48899999999999999999766544
No 88
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.84 E-value=0.00051 Score=69.91 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
+.+++|+|||||||||++.+|.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3589999999999999999987
No 89
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.80 E-value=0.00051 Score=72.46 Aligned_cols=26 Identities=31% Similarity=0.361 Sum_probs=22.7
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.|+++|+|||||||||++.+|.-.+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45799999999999999999986555
No 90
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.79 E-value=0.00069 Score=65.71 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+.+|+|||||||||++.+|.-.+|.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 458899999999999999999766654
No 91
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.78 E-value=0.00046 Score=68.89 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCChhHHHHHHH-HHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIR-FVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~-~~L 49 (1099)
.+.+|+|||||||||++..|. -.+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999987 544
No 92
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.76 E-value=0.00051 Score=66.28 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=21.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHH
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.+ .+.+|+|||||||||++.+|.-.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 444 47889999999999999998543
No 93
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.76 E-value=0.00059 Score=70.75 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+++|+|||||||||++..|.-.+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 44889999999999999999987774
No 94
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.72 E-value=0.00076 Score=69.54 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=23.4
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
.+.+.+|+|||||||||++..|...+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 356899999999999999999987663
No 95
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.71 E-value=0.00056 Score=69.34 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=20.5
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
..+|+|||||||||++.+|.-.+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3579999999999999999766543
No 96
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.69 E-value=0.00071 Score=69.73 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+.+|+|||||||||++..|...+-
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45889999999999999999987663
No 97
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.67 E-value=0.00082 Score=65.57 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=22.2
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+.+.+|+|||||||||++..+.-.+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45688999999999999999997555
No 98
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.66 E-value=0.3 Score=42.88 Aligned_cols=75 Identities=17% Similarity=0.323 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 273 RFKDLMKEVQTLNKEKEAIEKRLTEAIKNQTAFELDVKDIQERISGNSQARDDAKKQLRSLLEEIDDSSKELDKA 347 (1099)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 347 (1099)
.+..+...+......+..++..-.........++.++..+..++.....+....+..+..++..+..+...+...
T Consensus 43 k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~ 117 (155)
T 2efr_A 43 KSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333334444444444444444334444444444444444444333333
No 99
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.65 E-value=0.00085 Score=64.48 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.1
Q ss_pred cEEEEcCCCCChhHHHHHHHHHh
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+|+|||||||||++.+|.-.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 67899999999999999996544
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.64 E-value=0.7 Score=62.40 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.3
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
-..||||.||||||++..+.-+|+
T Consensus 908 GvmlVGp~gsGKTt~~~~L~~al~ 931 (3245)
T 3vkg_A 908 GVMMVGPSGGGKTTSWEVYLEAIE 931 (3245)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999998877764
No 101
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.61 E-value=0.001 Score=67.10 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|.+.+|+|||||||||++.+|.--||-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999999755544
No 102
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.59 E-value=0.0011 Score=62.58 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+.+|+|||||||||+..+|.-.||.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47889999999999999999877764
No 103
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.56 E-value=0.0012 Score=59.84 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.2
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+...+|+|||||||||++.+|.-.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999997666
No 104
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.56 E-value=0.00095 Score=72.03 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=22.6
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.|+++|+|||||||||++.+|.-.+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 35789999999999999999987655
No 105
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.55 E-value=0.001 Score=69.32 Aligned_cols=26 Identities=42% Similarity=0.475 Sum_probs=22.9
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.|.+.+|+|||||||||++..|...+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999998766
No 106
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.52 E-value=0.001 Score=66.56 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=22.4
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+|||||||||++..|...+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 444 488999999999999999987644
No 107
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.51 E-value=0.00098 Score=67.97 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=23.6
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+++| .+|+|||||||||++.+|.-.++.
T Consensus 43 ~~~G-vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 43 TPAG-VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp CCSE-EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred CCCe-EEEECCCCCcHHHHHHHHHHHcCC
Confidence 4455 889999999999999999877654
No 108
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.51 E-value=0.0011 Score=69.68 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+++|+|||||||||++..|...+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4588999999999999999997766
No 109
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.47 E-value=0.0012 Score=70.69 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+++++|+|||||||||++.+|.-.+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4588999999999999999996555
No 110
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.47 E-value=0.0013 Score=62.58 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+...+|+|||||||||++.+|...+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45778999999999999999977663
No 111
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.47 E-value=0.0013 Score=64.35 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+.+|+|||||||||++..|.-.+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3478899999999999999997655
No 112
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.46 E-value=0.001 Score=71.38 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.4
Q ss_pred cEEEEcCCCCChhHHHHHHHHHh
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+++|+|||||||||++.+|.-.+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 88999999999999999987444
No 113
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.44 E-value=0.0013 Score=67.81 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.8
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
-+++|+|||||||||++.+|.-.++
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3889999999999999999988875
No 114
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.43 E-value=0.0013 Score=63.66 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+.+|+|||||||||+..+|.-.|+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999976664
No 115
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.42 E-value=0.0013 Score=68.57 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
.+.+|+|||||||||++..|.-.++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4889999999999999999987775
No 116
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.39 E-value=0.0014 Score=71.03 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++..|...+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4588999999999999999997666
No 117
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.36 E-value=0.0013 Score=68.44 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=27.4
Q ss_pred cccccccccccccCCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 10 GFKSYREQIATEPFSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 10 ~f~sf~~~~~~~~f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
||..+.+.. . .|.+| +++|+|||||||||++..|...+
T Consensus 21 g~~~Ld~i~-~-~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 21 GCTGINDKT-L-GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SCTTHHHHH-C-SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHh-c-CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344443333 2 36655 99999999999999999887655
No 118
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.35 E-value=0.0018 Score=61.17 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+.+|+|||||||||+..+|.-.+|.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 347889999999999999999765654
No 119
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.34 E-value=0.0018 Score=73.06 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.8
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
.+++|+|||||||||++.+|.-.+-
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4889999999999999999876553
No 120
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.31 E-value=0.51 Score=41.46 Aligned_cols=40 Identities=8% Similarity=0.156 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001328 324 DDAKKQLRSLLEEIDDSSKELDKANTLYENKCIEEKKITK 363 (1099)
Q Consensus 324 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (1099)
..+...+..+...+.............+..+...+..++.
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd 112 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED 112 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333333333333333333333
No 121
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.30 E-value=0.0014 Score=68.80 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+++++|+|||||||||++.+|.-.+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4688999999999999999876444
No 122
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.29 E-value=0.0016 Score=69.47 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
..+++|+|||||||||++.+|.-.+
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4588999999999999999986544
No 123
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.29 E-value=0.0021 Score=73.92 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=22.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+++| +++|+|||||||||++..|.-.+
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3454 88999999999999999986544
No 124
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.27 E-value=0.002 Score=66.76 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
..+++|+|||||||||++.+|. .+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4588999999999999999999 553
No 125
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.22 E-value=0.0024 Score=64.32 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=22.6
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+.+|+||||||||||+..|.-.||-
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46789999999999999999866665
No 126
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0022 Score=72.89 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+++|+|||||||||++.+|.-.+-
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCC
Confidence 35899999999999999998876553
No 127
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.18 E-value=0.003 Score=72.66 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=21.8
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+++ .+++|+|||||||||++.+|.-.+
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 444 488999999999999998875444
No 128
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.15 E-value=0.0023 Score=73.47 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+++| +++|+|||||||||++..|.-.+
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3444 88999999999999999886444
No 129
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.14 E-value=0.0018 Score=76.83 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
+.+++|+|||||||||++.+|.
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3588999999999999999998
No 130
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.12 E-value=0.0025 Score=66.69 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
+.+++|+||||||||||+++|.-
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHC
T ss_pred CCEEEEECCCCccHHHHHHHHhc
Confidence 45889999999999999998863
No 131
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.11 E-value=0.0022 Score=69.16 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=16.7
Q ss_pred EEEcCCCCChhHHHHHHH
Q 001328 29 CVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 29 ~I~G~NGsGKS~i~~ai~ 46 (1099)
+|+||||||||||+.+|.
T Consensus 35 ~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 35 MVVGESGLGKSTLINSLF 52 (418)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 799999999999999875
No 132
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.10 E-value=0.0016 Score=60.43 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
.+++|+||||||||||+..|.-.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999966653
No 133
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.06 E-value=0.0026 Score=63.77 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=26.8
Q ss_pred cccccccccccccCCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 10 GFKSYREQIATEPFSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 10 ~f~sf~~~~~~~~f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
||..+.+... +.+.+ .+++|+|||||||||++..|...+
T Consensus 8 g~~~Ld~~~~-ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 8 GILDFDKLIQ-GGIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SCHHHHGGGT-TSEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CchHHHHHhc-CCCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4555543322 12444 488999999999999999987544
No 134
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.00 E-value=0.0028 Score=71.46 Aligned_cols=25 Identities=40% Similarity=0.509 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999987554
No 135
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.98 E-value=0.0033 Score=63.78 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.4
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
++| .+|+|||||||||++.+|...++
T Consensus 49 ~~g-~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 49 PKG-VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CSE-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHhC
Confidence 445 88999999999999999987664
No 136
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.96 E-value=0.0029 Score=72.11 Aligned_cols=25 Identities=40% Similarity=0.509 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+||||||||||+.+|.-.+
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4599999999999999999987554
No 137
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.96 E-value=0.7 Score=39.85 Aligned_cols=32 Identities=13% Similarity=0.332 Sum_probs=12.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 342 KELDKANTLYENKCIEEKKITKDIMEREKQLS 373 (1099)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 373 (1099)
..+.........+......++..+..+...+.
T Consensus 90 ~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 90 KRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444443
No 138
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.95 E-value=0.003 Score=70.91 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
..+++|+|||||||||++.+|.-.+
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999886544
No 139
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.94 E-value=0.003 Score=72.04 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=21.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
.+++|+|||||||||++.+|.-.+-
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 4889999999999999999875553
No 140
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.0033 Score=68.94 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++..|.-.+
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4589999999999999999986544
No 141
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.92 E-value=0.0034 Score=60.75 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+.+|+|||||||||++.+|.-.|
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999997655
No 142
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.92 E-value=0.0024 Score=75.88 Aligned_cols=25 Identities=28% Similarity=0.491 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+||||||||||+..|.-.+
T Consensus 699 GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 699 SSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp TCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999986544
No 143
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.89 E-value=0.0031 Score=61.47 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.4
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+|+|||||||||+...+.- ||.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCC
Confidence 578999999999999999965 543
No 144
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.89 E-value=0.0035 Score=61.02 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.9
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+|+|||||||||+...|.- +|-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~ 26 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGA 26 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTC
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCC
Confidence 468999999999999999987 653
No 145
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.88 E-value=0.0034 Score=73.61 Aligned_cols=39 Identities=18% Similarity=0.422 Sum_probs=25.2
Q ss_pred eEEEEeccc--ccccccccccCCC-CcEEEEcCCCCChhHHHHH
Q 001328 4 KQVIIEGFK--SYREQIATEPFSP-QVNCVVGANGSGKTNFFHA 44 (1099)
Q Consensus 4 ~~l~l~~f~--sf~~~~~~~~f~~-~~~~I~G~NGsGKS~i~~a 44 (1099)
.++.+.|-. -+.+..+. +.+ .+++|+|||||||||++..
T Consensus 22 ~~~~~~~~~~~~L~~vsl~--i~~Ge~~~liGpNGaGKSTLl~~ 63 (670)
T 3ux8_A 22 DKIIVKGARAHNLKNIDVE--IPRGKLVVLTGLSGSGKSSLAFD 63 (670)
T ss_dssp CEEEEEEECSTTCCSEEEE--EETTSEEEEECSTTSSHHHHHTT
T ss_pred ceEEEcCCCccceeccEEE--ECCCCEEEEECCCCCCHHHHhcc
Confidence 345555522 23343332 444 4899999999999999733
No 146
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.88 E-value=0.0021 Score=66.59 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=16.6
Q ss_pred EEEcCCCCChhHHHHHHH
Q 001328 29 CVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 29 ~I~G~NGsGKS~i~~ai~ 46 (1099)
+|+||||||||||+.+|.
T Consensus 22 ~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 22 MVVGESGLGKSTLINSLF 39 (301)
T ss_dssp EEEEETTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 799999999999999874
No 147
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.87 E-value=0.0036 Score=65.91 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578899999999999999997555
No 148
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.84 E-value=0.0045 Score=61.54 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+.+|+||+||||||+...|.-.+|-
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~ 31 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQW 31 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46889999999999999999766653
No 149
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.84 E-value=0.0041 Score=66.79 Aligned_cols=26 Identities=19% Similarity=0.430 Sum_probs=22.4
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
...+|+||||||||||+.+|.-.+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47799999999999999999766644
No 150
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.82 E-value=0.0042 Score=63.89 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.4
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
++| .+|+|||||||||++.+|...++
T Consensus 73 ~~g-vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 73 PKG-VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCE-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCe-EEEECCCcChHHHHHHHHHHHcC
Confidence 445 78999999999999999987664
No 151
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.82 E-value=0.0025 Score=63.27 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=19.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
+.+.+|.|||||||||++..|.-
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34788999999999999998753
No 152
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.81 E-value=0.0048 Score=65.29 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.2
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
...+|+|||||||||++.+|.-.+|.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 57899999999999999999888754
No 153
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.80 E-value=0.004 Score=65.48 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
..+.+|+|||||||||++..|.-.+
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3588999999999999999987555
No 154
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.0034 Score=71.37 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=20.9
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+++|+|||||||||++.+|.-.+-
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 689999999999999998875553
No 155
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.79 E-value=0.0032 Score=65.85 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.9
Q ss_pred CcEEEEcCCCCChhHHHHHHH
Q 001328 26 QVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+++|+|||||||||++..|.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHH
Confidence 378999999999999998875
No 156
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.77 E-value=0.0034 Score=71.98 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+++|+|||||||||++.+|.-.+
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3488999999999999998875443
No 157
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.77 E-value=0.0038 Score=69.45 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+.+|+|||||||||++.++...+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4468999999999999999986555
No 158
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.77 E-value=0.0018 Score=66.39 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
+.+++|+||||||||||+++|.
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHhc
Confidence 4588999999999999999975
No 159
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.74 E-value=0.0038 Score=71.93 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=22.0
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+++ .+++|+|||||||||++.+|.-.+
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 334 488999999999999999886444
No 160
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.70 E-value=0.0044 Score=64.23 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
..+.+|+|||||||||++.+|.-.+
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 4588999999999999999886433
No 161
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.69 E-value=0.0053 Score=63.08 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=23.1
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
.+.+.+|+|||||||||++..|...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999976663
No 162
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.69 E-value=0.0058 Score=59.31 Aligned_cols=27 Identities=33% Similarity=0.369 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+.+|+||+||||||+...|.-.||.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 347899999999999999999766654
No 163
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.67 E-value=0.006 Score=64.69 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+.+|+|||||||||++.+|.-.+++
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 348899999999999999999877766
No 164
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.66 E-value=0.006 Score=59.22 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.4
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+.+.+|+||+||||||+..++.-.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45688999999999999999996555
No 165
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.61 E-value=0.0041 Score=71.43 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=22.8
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|+-+..+|+|||||||||++.+|.-.+
T Consensus 43 l~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 43 LALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred ccCCeEEEECCCCChHHHHHHHHhCCC
Confidence 555569999999999999999997554
No 166
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.60 E-value=0.005 Score=59.11 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=18.7
Q ss_pred cEEEEcCCCCChhHHHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
..+|+||||||||||+..+...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4589999999999999987643
No 167
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.59 E-value=0.0058 Score=71.94 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.+++|+|||||||||++.+|..+
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 358999999999999999998654
No 168
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.54 E-value=0.0035 Score=71.91 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=21.3
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+++ .+++|+|||||||||++.+|.-.+
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 344 488999999999999998765433
No 169
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.54 E-value=0.0059 Score=71.37 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=22.9
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|++.+++|+|||||||||++..|..+.
T Consensus 574 l~g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 574 MAHELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp ESSCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHhhh
Confidence 555689999999999999999996543
No 170
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.54 E-value=0.0056 Score=66.71 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=22.7
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+ .+++|+||||||||||+..|.-.+
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 544 488999999999999999997655
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.52 E-value=0.0038 Score=61.17 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=19.8
Q ss_pred CCCCc-EEEEcCCCCChhHHHHHHH
Q 001328 23 FSPQV-NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 23 f~~~~-~~I~G~NGsGKS~i~~ai~ 46 (1099)
+.+|. .+|+||||||||||+.++.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHh
Confidence 44554 6899999999999998864
No 172
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.46 E-value=0.0067 Score=62.38 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
|.+.+|+|||||||||++..|...+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 45889999999999999999987763
No 173
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.46 E-value=0.0063 Score=58.91 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=18.7
Q ss_pred cEEEEcCCCCChhHHHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
..+|+||||||||||+.++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3579999999999999988643
No 174
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.45 E-value=0.0084 Score=57.87 Aligned_cols=26 Identities=27% Similarity=0.190 Sum_probs=22.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+.+|+||+||||||+..+|.-.||-
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 37789999999999999999766654
No 175
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.42 E-value=0.0053 Score=72.96 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
+.+++|+|||||||||+|..|..
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 35899999999999999999853
No 176
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.40 E-value=0.0061 Score=60.24 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.5
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHH
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
|.+ .+++|+|||||||||++..|..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444 4889999999999999998876
No 177
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.35 E-value=0.0076 Score=56.52 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=18.9
Q ss_pred cEEEEcCCCCChhHHHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
..+|+||+|||||||++.+.--
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999998543
No 178
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=95.25 E-value=2.4 Score=41.17 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=23.7
Q ss_pred ccccccc-chhhHHHHHHhhccCcceEEecCchHHHHH
Q 001328 528 IIELLDC-DEKFFTAVEVTAGNSLFHVVVDNDETSTKI 564 (1099)
Q Consensus 528 l~~~i~~-~~~~~~aie~~l~~~l~~~vv~~~~~a~~~ 564 (1099)
+.+-|.+ +.+| ++..+|+..+.|||++...++..
T Consensus 128 iYDDI~ieDApy---fsAlyGpar~AIVV~Dl~~~~~~ 162 (302)
T 3ibp_A 128 IYDDVSLEDAPY---FSALYGPSRHAIVVPDLSQVTEH 162 (302)
T ss_dssp HSTTCCTTTHHH---HHHHTGGGGSEEECSSCHHHHHH
T ss_pred hhcCCChhhHHH---HHHHhcccceeeEeCCHHHHHHH
Confidence 4455555 3344 44568999999999998887643
No 179
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.24 E-value=0.0093 Score=61.29 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
..+++|+|||||||||++..|...+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3488999999999999999887644
No 180
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.23 E-value=0.0094 Score=56.39 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+.+|+|++||||||+..++.-.|
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999997666
No 181
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.22 E-value=0.0076 Score=58.70 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+| +.+|+||+||||||+...|.-.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4444 67899999999999999987655
No 182
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.21 E-value=0.0073 Score=72.10 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=19.4
Q ss_pred CcEEEEcCCCCChhHHHHHHH
Q 001328 26 QVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+.+|+|||||||||+|..|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999983
No 183
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.13 E-value=0.0055 Score=71.84 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
..+++|+|||||||||++.+|.
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 3588999999999999998774
No 184
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.12 E-value=0.007 Score=62.70 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=22.2
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHH
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
|.+++.+|+|++|+|||||++++..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHC
Confidence 6667899999999999999999863
No 185
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.09 E-value=0.012 Score=58.41 Aligned_cols=27 Identities=30% Similarity=0.257 Sum_probs=23.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+.+|+||+||||||+..+|.-.||.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 357789999999999999999877765
No 186
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.09 E-value=0.011 Score=59.49 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=20.1
Q ss_pred CcEEEEcCCCCChhHHHHHHHH
Q 001328 26 QVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+++|+|||||||||++..|..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4889999999999999999876
No 187
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.02 E-value=0.013 Score=54.35 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=21.0
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+.+|+||+||||||++.++.-.|
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 478999999999999999986554
No 188
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.02 E-value=0.0087 Score=70.80 Aligned_cols=39 Identities=26% Similarity=0.454 Sum_probs=26.8
Q ss_pred EEEeccc--ccccccccccCCCC-cEEEEcCCCCChhHHHHHHH
Q 001328 6 VIIEGFK--SYREQIATEPFSPQ-VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 6 l~l~~f~--sf~~~~~~~~f~~~-~~~I~G~NGsGKS~i~~ai~ 46 (1099)
|.+.|.. .+.+..+. |++| +++|+||||||||||+.+|.
T Consensus 648 L~v~~l~~~~Lk~Vsl~--I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 648 LTVVGAREHNLRGIDVS--FPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEEEEECSTTCCSEEEE--EESSSEEEEECSTTSSHHHHHTTTH
T ss_pred EEEecCccccccCceEE--ECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 5555543 23333332 4444 89999999999999999974
No 189
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.98 E-value=0.0099 Score=72.05 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=19.2
Q ss_pred CcEEEEcCCCCChhHHHHHH
Q 001328 26 QVNCVVGANGSGKTNFFHAI 45 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai 45 (1099)
.+.+|+|||||||||+|..|
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHH
Confidence 68999999999999999999
No 190
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.97 E-value=0.011 Score=60.39 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=23.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|.+.+|+||+||||||+...|.-.|+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 457899999999999999999777754
No 191
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.93 E-value=0.015 Score=56.76 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|-+.+|+||+||||||+...|.-.||-
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 447889999999999999999766654
No 192
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.92 E-value=0.0094 Score=60.16 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=19.9
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHHH
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
|.+ .+++|+|||||||||++-.+.+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 444 4889999999999999765543
No 193
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.86 E-value=0.014 Score=54.85 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=21.6
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
..+|+||+||||||+..+|.-.||-
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4789999999999999999776654
No 194
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.82 E-value=0.014 Score=58.59 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.5
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+|+||+||||||+..+|.--+|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 5789999999999999999766654
No 195
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.77 E-value=0.015 Score=54.56 Aligned_cols=25 Identities=12% Similarity=0.006 Sum_probs=21.4
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+|+||.||||||+...+.-.||.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5689999999999999999766654
No 196
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.69 E-value=0.015 Score=60.31 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+.+|+|||||||||++..|...|.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55889999999999999999987763
No 197
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=94.65 E-value=0.0091 Score=70.30 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.6
Q ss_pred CCC-CcEEEEcCCCCChhHHHHHHH
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
|++ .+++|+|+||||||||+.+|.
T Consensus 647 I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 647 IPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 444 489999999999999999875
No 198
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.63 E-value=0.02 Score=56.97 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=23.4
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+.+.+|+||+||||||+...|.-.||-
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3447789999999999999999876763
No 199
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.58 E-value=0.019 Score=54.20 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|.+.+|+||.||||||+..++.-.|+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 347789999999999999999877754
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.58 E-value=0.016 Score=61.29 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
..+.+|+||+||||||+++++.-.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999997544
No 201
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.57 E-value=0.017 Score=65.48 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCCChhHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAI 45 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai 45 (1099)
+.+++|+|||||||||++..+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 358899999999999999985
No 202
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.57 E-value=0.015 Score=54.00 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=18.0
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
..+|+|++|+|||||+.++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999984
No 203
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.56 E-value=0.017 Score=58.26 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|.+.+|+||+||||||+..+|.-.|+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457789999999999999999776753
No 204
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.55 E-value=0.015 Score=61.41 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+++|+||||||||||+..+...+
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 488999999999999999887554
No 205
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.43 E-value=0.021 Score=54.45 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=21.0
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+|+||+||||||+...+.-.||-
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5689999999999999999655554
No 206
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.42 E-value=0.022 Score=57.76 Aligned_cols=26 Identities=31% Similarity=0.231 Sum_probs=22.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.-.+|+||+|||||++..+|...++.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 34789999999999999999877753
No 207
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.42 E-value=0.96 Score=39.69 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=9.5
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001328 242 VDDTRTRFSDESAKMYNSLLDAQEKSK 268 (1099)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 268 (1099)
+...+......+......+..+.....
T Consensus 8 lEeeLer~eerl~~a~~kLeeaek~ad 34 (147)
T 2b9c_A 8 VEEELDRAQERLATALQKLEEAEKAAD 34 (147)
T ss_dssp ---CCGGGGTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444333333344443333333
No 208
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.38 E-value=0.024 Score=51.88 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=21.2
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+.+|+|++||||||++..|.-.|
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 478899999999999999987666
No 209
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.36 E-value=0.017 Score=59.25 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|-+.+|+||+||||||+..++.--+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999996555
No 210
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.34 E-value=0.02 Score=54.49 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+.+|+|++||||||+...+.-.|+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999976664
No 211
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.32 E-value=0.018 Score=54.55 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.6
Q ss_pred CcEEEEcCCCCChhHHHHHHHH
Q 001328 26 QVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+.+|+||.||||||+...+.-
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4678999999999999999875
No 212
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.23 E-value=0.022 Score=53.78 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.6
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+|+||.||||||+..++ --+|.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCC
Confidence 6789999999999999999 55554
No 213
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.13 E-value=0.023 Score=60.49 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=20.6
Q ss_pred CCCC-cEEEEcCCCCChhHHHHHHHH
Q 001328 23 FSPQ-VNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 23 f~~~-~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
+.+| ..+|+|+||+||||++.+|.-
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3444 567999999999999999964
No 214
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=94.12 E-value=0.014 Score=68.50 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.1
Q ss_pred CCC-CcEEEEcCCCCChhHHHHH
Q 001328 23 FSP-QVNCVVGANGSGKTNFFHA 44 (1099)
Q Consensus 23 f~~-~~~~I~G~NGsGKS~i~~a 44 (1099)
+++ .+++|+|+||||||||+..
T Consensus 520 i~~Geiv~I~G~nGSGKSTLl~~ 542 (842)
T 2vf7_A 520 FPLGVMTSVTGVSGSGKSTLVSQ 542 (842)
T ss_dssp EESSSEEEEECCTTSSHHHHCCC
T ss_pred EcCCCEEEEEcCCCcCHHHHHHH
Confidence 444 4899999999999999986
No 215
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.09 E-value=0.015 Score=65.15 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.0
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+|+||||||||||+.+|.-.|+.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHHhhcc
Confidence 6789999999999999999877753
No 216
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.07 E-value=0.025 Score=58.16 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+.+|+|||||||||++..+...+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55888999999999999999987763
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.03 E-value=0.025 Score=55.07 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=22.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+.+|+|++||||||+...|.-.|+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34678999999999999999976665
No 218
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.00 E-value=0.024 Score=55.60 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
-+.+|+||+||||||+...+.- +|.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~ 29 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGI 29 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCC
Confidence 3678999999999999999976 653
No 219
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.99 E-value=0.031 Score=61.70 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.1
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
++| .+|+||||||||+++.||...++
T Consensus 64 p~G-vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 64 PKG-VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CSE-EEEECSSSSSHHHHHHHHHHHTT
T ss_pred Cce-EEEECCCCCCHHHHHHHHHHHhC
Confidence 344 78999999999999999987664
No 220
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.97 E-value=0.023 Score=53.21 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=17.8
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
-.+|+|++|+|||||+.++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 35799999999999999985
No 221
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.96 E-value=0.034 Score=52.57 Aligned_cols=27 Identities=19% Similarity=0.087 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+.+|+||.||||||+..++.-.||.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 346789999999999999999777754
No 222
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.96 E-value=0.025 Score=59.20 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.1
Q ss_pred cEEEEcCCCCChhHHHHHHHHHh
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+++|+||+||||||++-.+...+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999998886544
No 223
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.91 E-value=0.034 Score=52.84 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+.+|+||.||||||+..++.-.||.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346789999999999999999777754
No 224
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.91 E-value=0.031 Score=53.56 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=22.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
-+.+|+||.||||||+...+.-.||
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999987776
No 225
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.89 E-value=0.028 Score=53.88 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|.+.+|+||.||||||+...+.-.||.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 446789999999999999999766653
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.88 E-value=0.024 Score=61.09 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+.+|+|||||||||++..+...|
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6688999999999999999998777
No 227
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=93.72 E-value=0.04 Score=65.44 Aligned_cols=19 Identities=37% Similarity=0.686 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCChhHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFH 43 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ 43 (1099)
..+++|+|||||||||++.
T Consensus 610 Geiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 610 GVFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEEccCCCChhhhHH
Confidence 3588999999999999983
No 228
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.71 E-value=0.046 Score=56.70 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=23.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+...+|+||+|||||++..||.-.++.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~ 75 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQA 75 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTC
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 346789999999999999999887765
No 229
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.69 E-value=0.029 Score=53.54 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=18.1
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
..+|+|++|+|||||+.++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 56899999999999999885
No 230
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.62 E-value=0.03 Score=53.16 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|++|+|||||+..+.
T Consensus 5 v~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEESCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5799999999999998864
No 231
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.59 E-value=0.041 Score=53.23 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.6
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
...+|+||+|+|||+++.+|...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999976663
No 232
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.59 E-value=0.037 Score=54.43 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
.+.+|.||+||||||++..|.-.|+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3667999999999999999976665
No 233
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.58 E-value=0.037 Score=53.70 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.9
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+|+||.||||||+...+.-.||.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 4689999999999999999877765
No 234
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.58 E-value=0.046 Score=51.75 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHH-hcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFV-LSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~-Lg~ 51 (1099)
.+.+|+||.||||||+..++.-. +|-
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~ 37 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGF 37 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 46789999999999999999776 453
No 235
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.52 E-value=0.032 Score=58.93 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+.+|+||||+||||++.++...+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4577899999999999999997666
No 236
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.51 E-value=0.042 Score=53.43 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.0
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+|+||.||||||+...+.-.||-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 7789999999999999999766663
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.45 E-value=0.037 Score=62.66 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=24.4
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+.+.+|+|||||||||++.+|.-.++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3557889999999999999999888865
No 238
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.39 E-value=0.045 Score=52.62 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=23.3
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+.+.+|+||.||||||+...+.-.||.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3457889999999999999999766654
No 239
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.37 E-value=0.037 Score=59.37 Aligned_cols=22 Identities=27% Similarity=0.319 Sum_probs=19.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 001328 28 NCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+|+||||+||||++.+|.-.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999997744
No 240
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.30 E-value=0.041 Score=62.28 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=21.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+++|+||||||||||+..+...+
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 488999999999999999987654
No 241
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.27 E-value=0.043 Score=58.77 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=18.6
Q ss_pred CcEEEEcCCCCChhHHHHHHH
Q 001328 26 QVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+++|+||||||||||+..+.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHH
Confidence 488999999999999998654
No 242
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.23 E-value=0.041 Score=52.20 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|-+.+|+|+.||||||+...+.-.||.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457789999999999999999766665
No 243
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.21 E-value=0.044 Score=52.70 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|-+.+|+||.||||||+...+.--||.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346789999999999999998766653
No 244
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.20 E-value=0.058 Score=51.74 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.7
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
-.+|+|+.|+|||||+.++.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999874
No 245
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.16 E-value=0.032 Score=70.36 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
+.+++|+||||||||||+.+|.-.
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348899999999999999887533
No 246
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.11 E-value=0.043 Score=56.28 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+.+|+||||+||||++..+...+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5688899999999999999998777
No 247
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.08 E-value=0.051 Score=54.41 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
++..+|+||.|+|||+++.+|...++.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457789999999999999999776653
No 248
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.05 E-value=0.023 Score=55.70 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=21.0
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+|+||.||||||++..|.-.|+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999976664
No 249
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.05 E-value=0.052 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred cEEEEcCCCCChhHHHHHHHHHh
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+|+||.||||||+...+.-.|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999997666
No 250
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.98 E-value=0.045 Score=55.35 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+.+|+||+|||||||..++.-.+++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCcc
Confidence 347889999999999999999777765
No 251
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.95 E-value=0.071 Score=57.84 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+.++|+||+||||||++..+...+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999998876544
No 252
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=92.94 E-value=0.032 Score=60.07 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=18.2
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
..+|+||||||||||+.+|.
T Consensus 159 ~VgLVG~~gAGKSTLL~~Ls 178 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMT 178 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHC
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 57899999999999999875
No 253
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.93 E-value=0.062 Score=50.93 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+.+|+|+.||||||+-..+.--||-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36789999999999999999766664
No 254
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.90 E-value=0.049 Score=58.59 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.4
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
.|.+.+|+|||||||||++..+...|.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999987773
No 255
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.85 E-value=0.06 Score=50.98 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.0
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
-+.+|+|+.||||||+...+.-.||-
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 36679999999999999999776654
No 256
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.81 E-value=0.054 Score=57.48 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHhc
Q 001328 28 NCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
.+|+||+|+||||++.++.-.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 78999999999999999976664
No 257
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.80 E-value=0.051 Score=54.87 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|.+.+|+||+|||||||...+.--+++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~ 36 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPV 36 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCC
Confidence 457899999999999999998766654
No 258
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.78 E-value=0.061 Score=50.36 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=21.8
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+|+|+.||||||+...+.-.||.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999776764
No 259
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.75 E-value=0.045 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
|-+.+|+||.||||||+...+.-.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 446789999999999999998654
No 260
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.75 E-value=0.061 Score=52.86 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=22.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
-+.+|+||.||||||+...+.--||.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46789999999999999999766764
No 261
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.74 E-value=0.076 Score=50.92 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=18.3
Q ss_pred CcEEEEcCCCCChhHHHHHHH
Q 001328 26 QVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
.-.+|+|+.|+|||||+.++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 456799999999999999875
No 262
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.71 E-value=0.053 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.3
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+|+||.||||||+...+.-.|+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999977776
No 263
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.61 E-value=0.057 Score=58.13 Aligned_cols=25 Identities=32% Similarity=0.479 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+.+|+||+||||||++..+...|
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHH
Confidence 6788999999999999999997766
No 264
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.59 E-value=0.08 Score=51.04 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=22.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|-+.+|+||.||||||+...+.-.||.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 447789999999999999999766654
No 265
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.51 E-value=0.069 Score=51.45 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+.+|+||.||||||+...+.--||.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457889999999999999999766654
No 266
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.47 E-value=0.043 Score=57.02 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=21.5
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHH
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
-++|+.+|+|+.|+|||||++++.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~ 31 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLL 31 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh
Confidence 457999999999999999999874
No 267
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.45 E-value=0.051 Score=68.49 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=20.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+..++|+|||||||||++.+|.-.+
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3478899999999999999886444
No 268
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.35 E-value=0.069 Score=55.13 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+.+|+||+|||||||...|.-.|+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~ 33 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNG 33 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCC
Confidence 37789999999999999999888864
No 269
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.33 E-value=0.065 Score=51.35 Aligned_cols=26 Identities=31% Similarity=0.247 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+.+|+||.||||||+...+.-.||.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36789999999999999999765653
No 270
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.30 E-value=0.059 Score=57.15 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=18.1
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
..+|+|++|||||||+.++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~ 200 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLT 200 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999885
No 271
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.29 E-value=0.075 Score=55.18 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+...+|+||+|+|||++..+|.-.++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~ 80 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSA 80 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 456789999999999999999877754
No 272
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.27 E-value=0.082 Score=50.57 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
++..+|+||.|+|||+++.++...+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999977663
No 273
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.24 E-value=0.054 Score=68.49 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCChhHHHHHHHHH
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
..++||||+|||||||+.+|.-.
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTS
T ss_pred cEEEEEecCCCcHHHHHHHhccc
Confidence 48889999999999999988533
No 274
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.22 E-value=0.079 Score=49.26 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=21.3
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
..+|+|+.||||||+...+.-.||-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3579999999999999999776654
No 275
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.21 E-value=0.067 Score=54.87 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.6
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+.+|+||+|||||||..++.--++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~ 31 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPC 31 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36789999999999999999877764
No 276
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.15 E-value=0.066 Score=53.35 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=17.2
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|++|+|||||+.+|.
T Consensus 32 i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 32 IVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 4799999999999999875
No 277
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.13 E-value=0.079 Score=52.01 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=21.0
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+|+||.||||||+...+.-.||-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3579999999999999999766654
No 278
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.09 E-value=0.078 Score=52.29 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+-+.+|+||.||||||+...|.-.||.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 346789999999999999999766654
No 279
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.08 E-value=0.075 Score=51.33 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=21.8
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+.+|+||.||||||+...+.-.||.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 46789999999999999999766654
No 280
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.05 E-value=0.078 Score=51.67 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=23.1
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+-+.+|+|+.||||||+...+.-.||.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3457889999999999999999765543
No 281
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.01 E-value=0.083 Score=51.09 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=21.7
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
-+.+|+||.||||||+...+.-.|+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~ 29 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIP 29 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHC
Confidence 4678999999999999999977663
No 282
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.99 E-value=0.061 Score=55.04 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=19.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
-+.+|+||.||||||+...+.-.||
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999987776
No 283
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.97 E-value=0.086 Score=55.47 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.4
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+..+|+||+|+|||+++.+|...+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 467899999999999999997766
No 284
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.95 E-value=0.078 Score=54.82 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=20.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHhcc
Q 001328 28 NCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+|+||+||||||+..+|.-.|+-
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 679999999999999998766654
No 285
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.89 E-value=0.081 Score=51.62 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=22.0
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
-+.+|+||.||||||+...+.-.|+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 36789999999999999999766654
No 286
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.88 E-value=0.077 Score=55.90 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+.+|+||+|||||||...|.-.+++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCC
Confidence 347889999999999999999777765
No 287
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.82 E-value=0.11 Score=53.44 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=23.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|...+|+||.|+|||++..||...+|.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456678899999999999999988876
No 288
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.82 E-value=0.088 Score=52.22 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
+...+|+||+||||||++-.+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 5678999999999999877653
No 289
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.76 E-value=0.068 Score=54.43 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.7
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
..+|+|++|||||||+.++.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~ 24 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALT 24 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 35799999999999999984
No 290
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=91.76 E-value=0.086 Score=56.16 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=19.8
Q ss_pred CCCcEEEEcCCCCChhHHHHHHH
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+...+|+|+||+||||++.++.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~ 188 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALT 188 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 44577899999999999999874
No 291
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.74 E-value=0.09 Score=52.78 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.0
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+..+|+||.|+|||+++.++.-.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47889999999999999999766543
No 292
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.73 E-value=0.084 Score=53.27 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+.+|+|+.||||||+...+.-.|
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999997654
No 293
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.71 E-value=0.078 Score=49.39 Aligned_cols=26 Identities=15% Similarity=0.020 Sum_probs=20.5
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+...+|+||.||||||+.-++.--+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34567899999999999988775433
No 294
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.63 E-value=0.049 Score=52.41 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=18.9
Q ss_pred CCCcEEEEcCCCCChhHHHHHH
Q 001328 24 SPQVNCVVGANGSGKTNFFHAI 45 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai 45 (1099)
.+.-.+|+|++|+|||||+.++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l 45 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHML 45 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3456789999999999999986
No 295
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.62 E-value=0.11 Score=50.88 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
-+.+|+||.||||||+...|.-.||.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 35679999999999999999766654
No 296
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.61 E-value=0.095 Score=51.21 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
|-+.+|+|+.||||||+...+.-.|+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45778999999999999999976554
No 297
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.61 E-value=0.11 Score=48.30 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=22.6
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+.+|+|+-||||||+...+.--||-
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46789999999999999999776764
No 298
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.55 E-value=0.096 Score=57.49 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+..+|+||+|+|||+++.+|...+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999997766
No 299
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.55 E-value=0.1 Score=56.61 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
|.+.+|+||+|+||||+..++...+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999999997765
No 300
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.54 E-value=2.7 Score=48.52 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 001328 479 LCAEIDKLKAEVEKAEKSL 497 (1099)
Q Consensus 479 ~~~~l~~l~~~~~~~~~~~ 497 (1099)
+..+...+..++..+...+
T Consensus 563 l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 563 LRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444333
No 301
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.44 E-value=0.11 Score=49.88 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.1
Q ss_pred cEEEEcCCCCChhHHHHHHHHHh
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+.+|+|+.||||||+...+.--|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999996655
No 302
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.40 E-value=0.11 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=20.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHhcc
Q 001328 28 NCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+|+||.||||||+...+.--+|.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 579999999999999999655554
No 303
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.40 E-value=0.089 Score=49.95 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
++..+|+||.|+|||+++.++...+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4456899999999999999997766
No 304
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.39 E-value=0.094 Score=49.14 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.0
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+..+|+||.|+|||++..||.-.+++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45789999999999999999666665
No 305
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.36 E-value=0.1 Score=52.45 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
-+.+|+||.||||||+...|.-.||.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 36789999999999999999877764
No 306
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.34 E-value=0.12 Score=56.75 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=21.7
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
-.+|+||+|+|||++..||..-++.
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~ 75 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANV 75 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4789999999999999999876654
No 307
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.33 E-value=0.09 Score=50.29 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.4
Q ss_pred cEEEEcCCCCChhHHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
..+|+|+.|||||||+.++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 567999999999999998753
No 308
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.30 E-value=0.087 Score=49.71 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=17.5
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
-.+|+|++|+|||||+.++.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 45799999999999998864
No 309
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.29 E-value=0.07 Score=56.71 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=16.5
Q ss_pred EEEEcCCCCChhHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAI 45 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai 45 (1099)
.+|+|++|+|||||+++|
T Consensus 40 I~vvG~~g~GKSTLln~L 57 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSL 57 (361)
T ss_dssp EEECCCTTSCHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 379999999999999987
No 310
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.23 E-value=0.076 Score=67.14 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=19.4
Q ss_pred CcEEEEcCCCCChhHHHHHHHHH
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
..++||||+|||||||+.+|.-.
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 46789999999999999988533
No 311
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.23 E-value=0.081 Score=58.53 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=22.5
Q ss_pred cCCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 22 PFSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 22 ~f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.|.+| +++|+||+|+||||++-.|...+
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 36554 89999999999999998776544
No 312
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.19 E-value=5.2 Score=34.66 Aligned_cols=11 Identities=18% Similarity=0.286 Sum_probs=5.6
Q ss_pred EEecCCCcccC
Q 001328 641 CITLEGDQVSK 651 (1099)
Q Consensus 641 ~vt~~g~~~~~ 651 (1099)
-|+..|..+.-
T Consensus 11 ~V~I~Gk~Y~i 21 (138)
T 3hnw_A 11 EVILGGKVIKL 21 (138)
T ss_dssp EEEETTEEEEE
T ss_pred EEEECCEEEEe
Confidence 35555655443
No 313
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.17 E-value=0.096 Score=54.82 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+..+|+||+|+|||++..+|.-.++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 46789999999999999999777643
No 314
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.13 E-value=0.12 Score=46.47 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+...+|+||.|+|||++..+|....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3456899999999999999997544
No 315
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.11 E-value=0.089 Score=57.91 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=17.9
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
-.+|+|+||+|||||+.++.
T Consensus 182 kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHh
Confidence 46799999999999999875
No 316
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=91.09 E-value=0.097 Score=55.46 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=18.1
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
..+|+|+||+|||||+.++.
T Consensus 24 kvgIVG~pnvGKSTL~n~Lt 43 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLT 43 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999985
No 317
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.09 E-value=0.11 Score=56.39 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.6
Q ss_pred cEEEEcCCCCChhHHHHHHHHHh
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
..+|+||+|+|||+++.++.-.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78899999999999999987555
No 318
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.08 E-value=0.097 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
-+.+|+||.||||||+...+. -+|.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~ 100 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGA 100 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCC
Confidence 367899999999999999998 4654
No 319
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=91.02 E-value=0.11 Score=55.58 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=21.3
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHH
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
++-...+|+|++||||||++.+|.-
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhC
Confidence 4444889999999999999999864
No 320
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=91.00 E-value=0.078 Score=54.66 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.1
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHH
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
|..|..+|+|+.|+|||||+.++.
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~ 28 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLL 28 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHh
Confidence 455788999999999999999985
No 321
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.99 E-value=6.4 Score=33.16 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 897 NYERKLQDDARELEQLLSRRNILLAKQEEYSKKI 930 (1099)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 930 (1099)
.++..+..+...+......+..++.+++.+..++
T Consensus 66 ~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 66 EAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 322
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.98 E-value=0.13 Score=53.02 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+...+|+||.|+|||++..+|.-.++.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 455789999999999999999877765
No 323
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.98 E-value=0.13 Score=50.29 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|-+.+|+||.||||||+...+.-.||-
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 346789999999999999999777764
No 324
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.97 E-value=0.12 Score=56.23 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
++..+|+||+|+||||++.++.-.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999987655
No 325
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.88 E-value=0.1 Score=49.15 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFH 43 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ 43 (1099)
+.+.+|+||.||||||++-
T Consensus 3 g~i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELL 21 (184)
T ss_dssp CCEEEEEESTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 3578999999999999973
No 326
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.81 E-value=0.12 Score=50.36 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=20.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHhcc
Q 001328 28 NCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+|+||.||||||+...+.--+|.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999655554
No 327
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.66 E-value=0.14 Score=53.98 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+++|+|||||||||+.-.+...+
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999987775443
No 328
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.65 E-value=0.12 Score=59.49 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+...+|+|||||||||++.+|.-.+..
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 357789999999999999999887754
No 329
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=90.64 E-value=0.12 Score=52.31 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=17.9
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
..+|+|++|||||||+.++.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~ 24 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLIT 24 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999985
No 330
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.57 E-value=0.083 Score=49.97 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=16.8
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
-.+|+|++|+|||||+.++.
T Consensus 20 ~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 34699999999999997763
No 331
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.55 E-value=0.095 Score=52.97 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=20.2
Q ss_pred ccCCCCcEEEEcCCCCChhHHHHH
Q 001328 21 EPFSPQVNCVVGANGSGKTNFFHA 44 (1099)
Q Consensus 21 ~~f~~~~~~I~G~NGsGKS~i~~a 44 (1099)
+.|++|++.|.||.|||||||.--
T Consensus 24 GGl~~GiteI~G~pGsGKTtL~Lq 47 (333)
T 3io5_A 24 GGMQSGLLILAGPSKSFKSNFGLT 47 (333)
T ss_dssp CCBCSEEEEEEESSSSSHHHHHHH
T ss_pred CCCcCCeEEEECCCCCCHHHHHHH
Confidence 357788999999999999999543
No 332
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.48 E-value=0.13 Score=47.68 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 8 i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 4699999999999999875
No 333
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.46 E-value=0.13 Score=48.98 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
+.-.+|+|++|+|||||+.++.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3456899999999999999875
No 334
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.41 E-value=0.13 Score=47.19 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=17.7
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|+.|+|||||+.++..
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 57999999999999998863
No 335
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.39 E-value=0.16 Score=51.39 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|...+|+||.|+|||++..+|...++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~ 65 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQV 65 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345689999999999999999877765
No 336
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.36 E-value=0.11 Score=53.50 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=22.7
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+.+|+||.|||||||.-.|.--|++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCC
Confidence 37889999999999999999877765
No 337
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.30 E-value=0.15 Score=49.70 Aligned_cols=24 Identities=21% Similarity=0.032 Sum_probs=20.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhcc
Q 001328 28 NCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+|+||.||||||+...+.-.||-
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 479999999999999999766654
No 338
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.14 E-value=7.7 Score=32.68 Aligned_cols=19 Identities=0% Similarity=0.113 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001328 671 NIIMRNTKTINAREEEVEK 689 (1099)
Q Consensus 671 ~~l~~l~~~~~~l~~~l~~ 689 (1099)
..|..++.++..+..+-..
T Consensus 20 ~~I~~LR~qid~~~~e~a~ 38 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKAR 38 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555544443333
No 339
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.09 E-value=0.13 Score=53.51 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.2
Q ss_pred CcEEEEcCCCCChhHHHHHHHH
Q 001328 26 QVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+.+|+||.||||||+...+.-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999998864
No 340
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.04 E-value=0.14 Score=47.58 Aligned_cols=19 Identities=26% Similarity=0.662 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 4699999999999999974
No 341
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.04 E-value=0.14 Score=47.54 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4799999999999999875
No 342
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.93 E-value=0.15 Score=47.09 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 6 i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999998875
No 343
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.92 E-value=9.5 Score=33.38 Aligned_cols=31 Identities=16% Similarity=0.107 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 464 KMQDERKSLWVKESELCAEIDKLKAEVEKAE 494 (1099)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 494 (1099)
.+......+...+......+..++.++..+.
T Consensus 112 ~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 112 AIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444544444443
No 344
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.89 E-value=0.11 Score=52.75 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=21.7
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
..+|+||.|+|||++..+|...++.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3679999999999999999877754
No 345
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.88 E-value=0.15 Score=47.98 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.5
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|+.|||||||+.++..
T Consensus 11 i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 47999999999999998753
No 346
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.87 E-value=0.14 Score=47.28 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=17.2
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 6 i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999875
No 347
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.85 E-value=0.16 Score=47.27 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 4699999999999998875
No 348
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.82 E-value=0.15 Score=47.37 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=17.2
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 4799999999999999875
No 349
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.81 E-value=0.14 Score=47.30 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=16.4
Q ss_pred EEEEcCCCCChhHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAI 45 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai 45 (1099)
.+|+|+.|+|||||+.++
T Consensus 5 i~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIF 22 (166)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 479999999999999876
No 350
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.80 E-value=0.15 Score=47.81 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=17.2
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999875
No 351
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.77 E-value=0.15 Score=48.02 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=16.9
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 12 i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEECCTTSCHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4799999999999999873
No 352
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.74 E-value=0.18 Score=57.18 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=23.8
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+++.+|+||.|+||||++.+|...+.
T Consensus 202 ~~~~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 202 AGHRLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp TTCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HhCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3467999999999999999999976653
No 353
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.73 E-value=0.15 Score=47.24 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999874
No 354
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.71 E-value=0.16 Score=47.07 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=17.6
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|+.|+|||||+.++..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 47999999999999998763
No 355
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.70 E-value=0.18 Score=49.43 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+-+.+|.||.||||||++..+.-.|+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 347789999999999999999666643
No 356
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.65 E-value=0.16 Score=47.55 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=16.9
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 5799999999999998764
No 357
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.64 E-value=0.17 Score=46.87 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 7 i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999998875
No 358
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.63 E-value=0.17 Score=47.16 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999999875
No 359
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.61 E-value=0.18 Score=50.09 Aligned_cols=27 Identities=22% Similarity=0.135 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|-+.+|+||.||||||+...+.--+|-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346789999999999999999644543
No 360
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.59 E-value=0.16 Score=47.23 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 10 i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 10 ILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4799999999999999884
No 361
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.54 E-value=0.18 Score=53.84 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.2
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
..+|+||+|+|||+++.+|.-.++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999977665
No 362
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.50 E-value=0.2 Score=47.00 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
+...+|+|+.|+|||||+.++.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3456799999999999999875
No 363
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.50 E-value=0.2 Score=52.85 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.2
Q ss_pred CcEEEEcCCCCChhHHHHHHHH
Q 001328 26 QVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.++.|+||+|||||++.-.+..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999987754
No 364
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.45 E-value=0.16 Score=60.58 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+...+|+||+||||||++.+|.-.++.
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 346789999999999999999877654
No 365
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.38 E-value=0.18 Score=54.91 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
|.+.+|+||.||||||+..++.--+|
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45788999999999999999854443
No 366
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.29 E-value=0.14 Score=53.15 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=26.3
Q ss_pred cccccccccccccCCCC-cEEEEcCCCCChhHHHHHHHHH
Q 001328 10 GFKSYREQIATEPFSPQ-VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 10 ~f~sf~~~~~~~~f~~~-~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
||..+...+ - .|.|| +++|.|+.|+||||+.-.|.+-
T Consensus 54 G~~~LD~~l-g-Gl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 54 GFTELDRMT-Y-GYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SCHHHHHHH-S-SBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHhhc-C-CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 444454333 2 46665 8999999999999998776543
No 367
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=89.25 E-value=0.17 Score=53.43 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.6
Q ss_pred EEEEcCCCCChhHHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
.+|+|++|+|||||+.++.-.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 579999999999999998643
No 368
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.23 E-value=0.2 Score=48.85 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=21.4
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+.+|+||.||||||+...|.-.||-
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCc
Confidence 4678999999999999999766654
No 369
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.19 E-value=0.21 Score=48.20 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.2
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
-+.+|.||.||||||++..+.-.|.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999966664
No 370
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.19 E-value=0.2 Score=48.43 Aligned_cols=27 Identities=33% Similarity=0.337 Sum_probs=22.1
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
.+-+.+|.|+.||||||+...+.-.|+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345778999999999999999965554
No 371
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.16 E-value=0.19 Score=47.98 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.4
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|+.|+|||||+.++..
T Consensus 28 i~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 47999999999999998753
No 372
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.14 E-value=0.19 Score=49.20 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
...+|+|+.||||||++.++...++
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4778999999999999999876653
No 373
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.07 E-value=0.24 Score=53.00 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=24.7
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.+++..+|+||.|+|||++..+|.-.++.
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia~~~~~ 77 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLARLLDV 77 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35567789999999999999999887755
No 374
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.04 E-value=0.18 Score=47.99 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4799999999999999875
No 375
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.99 E-value=0.2 Score=46.48 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999998875
No 376
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.99 E-value=0.24 Score=48.59 Aligned_cols=24 Identities=29% Similarity=0.200 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+..+|+||.|+|||+++.++.-.+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999999997655
No 377
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=88.97 E-value=0.21 Score=47.46 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCChhHHHHH
Q 001328 26 QVNCVVGANGSGKTNFFHA 44 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~a 44 (1099)
-+++|+||.|||||++.-+
T Consensus 6 mi~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHH
Confidence 3789999999999998544
No 378
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.96 E-value=0.18 Score=47.35 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=17.2
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 17 i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999875
No 379
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.94 E-value=0.2 Score=47.33 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=16.8
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+..+.
T Consensus 23 i~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4799999999999998765
No 380
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.93 E-value=0.19 Score=47.75 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=17.3
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 7 i~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999986
No 381
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.92 E-value=0.19 Score=46.26 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=17.5
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|+.|+|||||+.++..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 47999999999999998853
No 382
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.88 E-value=0.24 Score=47.65 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.4
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
-+.+|.||.||||||++..+.-.|.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999966664
No 383
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.87 E-value=0.18 Score=47.43 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=17.9
Q ss_pred cEEEEcCCCCChhHHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
-.+|+|+.|+|||||+.++..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 347999999999999998753
No 384
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.83 E-value=0.2 Score=45.28 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=18.6
Q ss_pred CCCcEEEEcCCCCChhHHHHHHH
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
...-.+|+||.|+||||+.-++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 44467899999999999987764
No 385
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.80 E-value=0.21 Score=48.52 Aligned_cols=25 Identities=24% Similarity=0.281 Sum_probs=17.8
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
-+.+|.||.||||||+...|.-.|.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999865553
No 386
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.73 E-value=0.28 Score=52.72 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|.-.+++||.|||||.+..||..-+|-
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCC
Confidence 456789999999999999999887766
No 387
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=88.70 E-value=0.21 Score=49.84 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.+|.
T Consensus 24 I~lvG~~g~GKSSlin~l~ 42 (247)
T 3lxw_A 24 LILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 3799999999999999875
No 388
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.68 E-value=0.26 Score=48.64 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
-+.+|+||.||||||+...|.--||-
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35679999999999999999766654
No 389
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.64 E-value=0.2 Score=47.27 Aligned_cols=20 Identities=35% Similarity=0.492 Sum_probs=17.4
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|+.|+|||||+.++..
T Consensus 10 i~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 46999999999999998753
No 390
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.64 E-value=0.19 Score=55.42 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
|.+.+|+|++||||||++.++.+.|.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999988874
No 391
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=88.62 E-value=0.31 Score=52.52 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=25.0
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
..|+..+++||.|||||++..++.-.++.
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 45667889999999999999999888854
No 392
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=88.62 E-value=0.17 Score=48.30 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=16.8
Q ss_pred cEEEEcCCCCChhHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAI 45 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai 45 (1099)
-.+|+|+.|+|||||+..+
T Consensus 25 ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp EEEEECSTTSSHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3479999999999999876
No 393
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.60 E-value=0.28 Score=52.78 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|.-.+++||.|||||.+..||..-+|-
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 456789999999999999999888876
No 394
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.58 E-value=0.22 Score=54.01 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
|.+.+|+|++|+||||+.-.+.+.|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45778999999999999999988874
No 395
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.57 E-value=0.21 Score=48.76 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.9
Q ss_pred cEEEEcCCCCChhHHHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIRFV 48 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~ 48 (1099)
-.+|+||.|+|||||+.++...
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5679999999999999988643
No 396
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.56 E-value=0.26 Score=51.37 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=23.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|+..+|+||.|+|||++..+|.-.++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 556789999999999999999888764
No 397
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.55 E-value=0.21 Score=47.51 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=17.6
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|+.|+|||||+.++..
T Consensus 24 i~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 47999999999999999863
No 398
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.53 E-value=0.25 Score=47.59 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|.+.+|.||.||||||+-..|.=-+|-
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 457789999999999999988665654
No 399
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.53 E-value=0.29 Score=52.62 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|.-.+++||.|||||.+..||..-+|-
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445789999999999999999988865
No 400
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.52 E-value=0.2 Score=50.95 Aligned_cols=27 Identities=22% Similarity=0.010 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
++..+|+||.|+|||++..+|...++.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~ 90 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNF 90 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 345679999999999999999877765
No 401
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.50 E-value=0.22 Score=47.51 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=17.5
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|+.|+|||||+.++..
T Consensus 14 i~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 47999999999999998753
No 402
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.49 E-value=0.22 Score=46.63 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 9 i~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 4699999999999999875
No 403
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.39 E-value=0.24 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCCChhH-HHHHHH
Q 001328 25 PQVNCVVGANGSGKTN-FFHAIR 46 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~-i~~ai~ 46 (1099)
+.+.+|+||.|||||| ++..+.
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~ 50 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLR 50 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999 666653
No 404
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.36 E-value=0.19 Score=50.77 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=18.3
Q ss_pred CcEEEEcCCCCChhHHHHHHH
Q 001328 26 QVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
...+|+|+.|+|||||+.+|.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSIL 43 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 345799999999999999885
No 405
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=88.35 E-value=0.21 Score=47.31 Aligned_cols=19 Identities=32% Similarity=0.595 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 13 i~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999999875
No 406
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.35 E-value=0.23 Score=46.53 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 18 i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999999875
No 407
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=88.32 E-value=0.25 Score=51.55 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+..+|+||.|+|||++..+|...++.
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35689999999999999999877754
No 408
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.32 E-value=0.23 Score=46.78 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=17.2
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 21 i~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3799999999999999886
No 409
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.28 E-value=0.23 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.+.+|+|+.|+||||++.++...|
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998776
No 410
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=88.28 E-value=0.24 Score=58.31 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=28.9
Q ss_pred EEEEecccccccccccccCC-CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 5 QVIIEGFKSYREQIATEPFS-PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 5 ~l~l~~f~sf~~~~~~~~f~-~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.|.|.|-+.+-=..+...|+ ..+++|+|++|||||||.--..|+-
T Consensus 15 ~I~i~gar~hNLkni~v~iP~~~l~viTGvSGSGKSSLafdtl~ae 60 (842)
T 2vf7_A 15 FVQVRGARQHNLKDISVKVPRDALVVFTGVSGSGKSSLAFGTLYAE 60 (842)
T ss_dssp EEEEEEECSTTCCSEEEEEESSSEEEEESSTTSSHHHHHTTTHHHH
T ss_pred eEEEeeccccCCCCeeEEecCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 57777755543222221233 4699999999999999984444443
No 411
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.19 E-value=0.3 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.7
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
...+|+||.|+|||.++.||...+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999977665
No 412
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.14 E-value=0.28 Score=49.22 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=25.0
Q ss_pred ecccccccccccccCCCC-cEEEEcCCCCChhHHHHHHH
Q 001328 9 EGFKSYREQIATEPFSPQ-VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 9 ~~f~sf~~~~~~~~f~~~-~~~I~G~NGsGKS~i~~ai~ 46 (1099)
.||..+.... -+.|++| +++|.|+.|+|||++.--+.
T Consensus 14 TGi~~LD~~l-~GGl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 14 SGIPGFDELI-EGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CSCTTTGGGT-TTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcHHHHHhh-cCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3566664432 1235544 88999999999999976543
No 413
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.12 E-value=0.33 Score=49.11 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+.+++++|+-|+||||++..+.+.|.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 46888999999999999999988874
No 414
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=88.12 E-value=0.24 Score=47.83 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=17.4
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
-.+|+|+.|+|||||+.++.
T Consensus 16 ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35799999999999998875
No 415
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=88.10 E-value=0.23 Score=51.99 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=18.1
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|++|+|||||+.++.-
T Consensus 5 I~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 5 CGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
Confidence 57999999999999999863
No 416
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=88.05 E-value=9.7 Score=31.11 Aligned_cols=9 Identities=22% Similarity=0.597 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 001328 331 RSLLEEIDD 339 (1099)
Q Consensus 331 ~~l~~~~~~ 339 (1099)
..+..++.+
T Consensus 21 ~s~~~eleE 29 (167)
T 4gkw_A 21 ESLQKQLEE 29 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 417
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.04 E-value=0.23 Score=46.92 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.8
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 21 i~v~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 21 LLMLGLDNAGKTTILKKFN 39 (186)
T ss_dssp EEEECSTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4699999999999998864
No 418
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.04 E-value=0.22 Score=49.91 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=17.8
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
..+|+|+.|||||||+.++.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~ 22 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALT 22 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999983
No 419
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.02 E-value=0.24 Score=46.55 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 13 i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 4699999999999999874
No 420
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.02 E-value=0.24 Score=47.61 Aligned_cols=20 Identities=25% Similarity=0.410 Sum_probs=17.5
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|+.|+|||||+.++..
T Consensus 29 i~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 47999999999999998753
No 421
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.01 E-value=0.23 Score=46.65 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 15 i~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 4799999999999998875
No 422
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.01 E-value=0.25 Score=53.58 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.4
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.++..+|+||.|+|||+++.++.-.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999997666
No 423
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=88.00 E-value=0.24 Score=47.18 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+..+.
T Consensus 9 v~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5799999999999998764
No 424
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=87.99 E-value=0.24 Score=45.70 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=18.0
Q ss_pred cEEEEcCCCCChhHHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
+++|+|+.|||||++-..+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHC
T ss_pred CEEEECCCCCcHHHHHHHHHh
Confidence 478999999999999887653
No 425
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=87.97 E-value=0.25 Score=46.71 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=17.5
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
-.+|+|+.|+|||||+.++.
T Consensus 20 ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 34799999999999998875
No 426
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.95 E-value=0.35 Score=51.15 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|.-.+++||.|||||.+..||..-+|-
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCC
Confidence 456789999999999999999888766
No 427
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=87.95 E-value=0.31 Score=46.90 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+-+.+|.||.||||||+...+.-.|+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 447789999999999999999777763
No 428
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=87.92 E-value=0.24 Score=47.16 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=16.9
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 29 i~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEECSTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4799999999999999873
No 429
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.91 E-value=0.26 Score=46.82 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 25 i~vvG~~~~GKSsli~~l~ 43 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYA 43 (189)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999875
No 430
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=87.89 E-value=0.24 Score=47.92 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 4799999999999999875
No 431
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=87.89 E-value=0.23 Score=47.34 Aligned_cols=19 Identities=26% Similarity=0.627 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 26 i~vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 3699999999999999885
No 432
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.83 E-value=0.16 Score=45.48 Aligned_cols=24 Identities=13% Similarity=-0.057 Sum_probs=19.7
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.-.+|+||.|+|||++..+|....
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CcEEEECCCCccHHHHHHHHHHhC
Confidence 346799999999999999886443
No 433
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=87.68 E-value=0.29 Score=53.88 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHh
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+..+|.|++|||||+++.+|...|
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sL 191 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSM 191 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999987644
No 434
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=87.66 E-value=0.26 Score=46.38 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=17.7
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
-.+|+|+.|+|||||+.++.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 45799999999999999875
No 435
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=87.61 E-value=0.24 Score=47.52 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=16.9
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 28 i~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 3699999999999999874
No 436
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=87.54 E-value=0.28 Score=46.37 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 8 i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999998875
No 437
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=87.53 E-value=0.24 Score=50.44 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=16.6
Q ss_pred EEEEcCCCCChhHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAI 45 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai 45 (1099)
.+|+|+.|+|||||+++|
T Consensus 11 I~vvG~~g~GKSTLin~L 28 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSL 28 (274)
T ss_dssp EEEEECTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 469999999999999997
No 438
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.52 E-value=0.27 Score=47.44 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=17.6
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|+.|+|||||+.++..
T Consensus 10 i~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 47999999999999998753
No 439
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=87.48 E-value=0.33 Score=51.32 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+..+|+||.|+|||++..+|...++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~ 81 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSA 81 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 45789999999999999999777765
No 440
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=87.46 E-value=0.22 Score=48.13 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=18.0
Q ss_pred CCCcEEEEcCCCCChhHHHHHH
Q 001328 24 SPQVNCVVGANGSGKTNFFHAI 45 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai 45 (1099)
..++.+|+||.|+||||.+-.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~ 32 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRR 32 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHH
Confidence 4568899999999999977444
No 441
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=87.44 E-value=0.28 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.8
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHH
Q 001328 23 FSPQVNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 23 f~~~~~~I~G~NGsGKS~i~~ai~ 46 (1099)
++....+|+|+.|+||||++++|.
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~ 45 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIV 45 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHH
Confidence 445578999999999999999995
No 442
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=87.43 E-value=0.26 Score=49.36 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=18.2
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
..+|+|++|+|||||+.++.
T Consensus 101 ~v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred heEEeCCCCCCHHHHHHHHh
Confidence 56899999999999999986
No 443
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=87.34 E-value=0.27 Score=46.96 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=17.2
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 19 i~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 4799999999999999875
No 444
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.32 E-value=0.34 Score=50.54 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
+...+|+||.|+|||++..||...+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3567899999999999999998776
No 445
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.30 E-value=0.26 Score=47.29 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.5
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|+.|+|||||+.++..
T Consensus 11 i~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHc
Confidence 46999999999999998753
No 446
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=87.22 E-value=0.3 Score=46.46 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=17.3
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|+.|+|||||+.++..
T Consensus 24 i~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 47999999999999988753
No 447
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=87.20 E-value=0.31 Score=47.89 Aligned_cols=26 Identities=31% Similarity=0.224 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
+...+|+|+.|+|||||+..+...++
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34678999999999999999876653
No 448
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=87.17 E-value=0.36 Score=50.52 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+...+|+||.|+|||++..||.-.++.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence 345789999999999999999877765
No 449
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.15 E-value=0.27 Score=46.81 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.8
Q ss_pred cEEEEcCCCCChhHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAI 45 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai 45 (1099)
-.+|+|+.|+|||||+.++
T Consensus 31 ki~v~G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3469999999999999986
No 450
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=87.15 E-value=0.3 Score=46.34 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=16.9
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 23 i~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999864
No 451
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=87.12 E-value=0.29 Score=49.05 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=17.7
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
..+|+|+.|||||||+.++.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~ 26 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALT 26 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999984
No 452
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=87.08 E-value=0.29 Score=46.94 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 31 i~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 31 IVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 4799999999999999875
No 453
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=87.06 E-value=0.3 Score=57.76 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=28.8
Q ss_pred eEEEEecccccccccccccCC-CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 4 KQVIIEGFKSYREQIATEPFS-PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 4 ~~l~l~~f~sf~~~~~~~~f~-~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
..|.|.|-+.+.=+.+...++ ..+++|+|++|||||||.=-..|+=
T Consensus 22 ~~I~i~gar~hNLkni~v~iP~~~lvv~tG~SGSGKSSLafdtlyaE 68 (972)
T 2r6f_A 22 DKIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAE 68 (972)
T ss_dssp CEEEEEEECSSSCCSEEEEEETTSEEEEEESTTSSHHHHHTTTHHHH
T ss_pred ceEEEeccccccCCceeeeccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457777755543332221133 5799999999999999863333333
No 454
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.03 E-value=0.29 Score=46.31 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=17.6
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
-.+|+|+.|+|||||+.++.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 45799999999999999875
No 455
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=87.03 E-value=0.29 Score=47.02 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.6
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|+.|+|||||+.++..
T Consensus 27 i~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 47999999999999998763
No 456
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=87.02 E-value=0.27 Score=47.44 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRFS 29 (206)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4799999999999998875
No 457
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.00 E-value=0.26 Score=58.75 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=23.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
++..+|+||+|||||++..+|...++.
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 456789999999999999999988865
No 458
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=86.96 E-value=0.31 Score=45.78 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=17.4
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
-.+|+|+.|+|||||+.++.
T Consensus 10 ki~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 35799999999999998875
No 459
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=86.93 E-value=0.3 Score=47.09 Aligned_cols=20 Identities=35% Similarity=0.492 Sum_probs=17.5
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|+.|+|||||+.++..
T Consensus 31 i~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 47999999999999998753
No 460
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=86.92 E-value=0.3 Score=46.28 Aligned_cols=19 Identities=42% Similarity=0.538 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 25 i~v~G~~~~GKSsli~~l~ 43 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999875
No 461
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.92 E-value=0.25 Score=51.24 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=26.2
Q ss_pred cccccccccccccCCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 10 GFKSYREQIATEPFSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 10 ~f~sf~~~~~~~~f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
||..+...+ - .|.|| +++|.|++|+||||+.-.|.+.+
T Consensus 32 G~~~LD~~~-g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 32 GFVQLDNYT-S-GFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp SCHHHHHHH-C-SBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CChHHHHHh-c-CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 444443332 2 36655 89999999999999987775443
No 462
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=86.88 E-value=0.32 Score=57.90 Aligned_cols=39 Identities=18% Similarity=0.385 Sum_probs=27.1
Q ss_pred eEEEEecccccccccccccCC-CCcEEEEcCCCCChhHHH
Q 001328 4 KQVIIEGFKSYREQIATEPFS-PQVNCVVGANGSGKTNFF 42 (1099)
Q Consensus 4 ~~l~l~~f~sf~~~~~~~~f~-~~~~~I~G~NGsGKS~i~ 42 (1099)
..|.|.|-+.+.=+.+...++ ..+++|+|++|||||+|.
T Consensus 2 ~~i~i~gar~hNLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 2 NEIVVKGARVHNLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp CEEEEESBCSTTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred CcEEEeCccccccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 467888766654333221133 579999999999999986
No 463
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=86.76 E-value=0.3 Score=46.95 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=16.8
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYA 29 (203)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4699999999999998864
No 464
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=86.71 E-value=0.3 Score=48.03 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.5
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
-.+|+|+.|+|||||+.++.
T Consensus 31 kI~vvG~~~vGKSsLin~l~ 50 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVS 50 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 45799999999999999873
No 465
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.65 E-value=0.31 Score=46.28 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=17.4
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|+.|+|||||+.++..
T Consensus 26 i~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 37999999999999998753
No 466
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=86.64 E-value=0.28 Score=46.14 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=17.2
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 24 i~v~G~~~~GKSsli~~l~ 42 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFS 42 (181)
T ss_dssp EEEEEETTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4799999999999999875
No 467
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=86.64 E-value=0.39 Score=51.06 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+...+|+||.|+|||++..+|.-.++.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~ 143 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGA 143 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC
Confidence 456789999999999999999877755
No 468
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=86.62 E-value=0.33 Score=46.24 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 26 i~~vG~~~~GKSsl~~~l~ 44 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFS 44 (194)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 4799999999999999875
No 469
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=86.61 E-value=0.31 Score=47.38 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.4
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
-.+|+|+.|+|||||+.++.
T Consensus 36 ki~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 34699999999999999875
No 470
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=86.59 E-value=0.36 Score=51.83 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.0
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
...+|+||.|+|||++..+|.-.++.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46789999999999999999887764
No 471
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=86.56 E-value=0.39 Score=51.63 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=24.0
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.++..+|+||.|+|||++..+|.-.++.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456789999999999999999888864
No 472
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.55 E-value=0.33 Score=47.12 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 23 i~v~G~~~~GKSsli~~l~ 41 (213)
T 3cph_A 23 ILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999999875
No 473
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=86.52 E-value=0.38 Score=53.26 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
++..+|+||+|+|||++..+|...+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4456899999999999999997776
No 474
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.51 E-value=0.34 Score=46.30 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=17.3
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+|+|+.|+|||||+.++..
T Consensus 31 i~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 31 LAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 47999999999999988753
No 475
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.51 E-value=0.41 Score=50.73 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.8
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 26 QVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 26 ~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
.-.+|+||.|+|||++..||.-.++.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45689999999999999999887765
No 476
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=86.47 E-value=0.32 Score=46.34 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=17.6
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
-.+|+|+.|+|||||+.++.
T Consensus 17 ~i~v~G~~~~GKssli~~l~ 36 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999875
No 477
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=86.46 E-value=0.3 Score=49.61 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=17.7
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
..+|+|+.|||||||++++.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~ 24 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLT 24 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 35799999999999999984
No 478
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=86.42 E-value=0.26 Score=46.80 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.2
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 001328 27 VNCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~ 46 (1099)
-.+|+|+.|+|||||+.++.
T Consensus 23 ki~v~G~~~~GKSsli~~l~ 42 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLK 42 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 34699999999999998874
No 479
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=86.38 E-value=0.35 Score=46.25 Aligned_cols=19 Identities=32% Similarity=0.195 Sum_probs=16.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 17 i~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999986554
No 480
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=86.34 E-value=0.33 Score=56.35 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.8
Q ss_pred cEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 27 VNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 27 ~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
..+|+|+||+|||||++++.+..+.
T Consensus 11 ~i~IiG~~gaGKTTLl~~L~~~~~~ 35 (665)
T 2dy1_A 11 TVALVGHAGSGKTTLTEALLYKTGA 35 (665)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHHHhcCC
Confidence 5679999999999999999876654
No 481
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=86.28 E-value=0.36 Score=45.69 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 24 i~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 4799999999999998875
No 482
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.27 E-value=0.37 Score=50.59 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
+...+|+||.|+|||++..+|...++.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~ 64 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGV 64 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 356789999999999999999877764
No 483
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.22 E-value=0.34 Score=46.83 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 28 i~vvG~~~~GKSsli~~l~ 46 (207)
T 2fv8_A 28 LVVVGDGACGKTCLLIVFS 46 (207)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 4799999999999998875
No 484
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=86.20 E-value=10 Score=29.55 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001328 897 NYERKLQDDARELEQLLSRRNILLAKQEEYSKKI 930 (1099)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 930 (1099)
.++..+..+...+..+...+..++.+++.+..++
T Consensus 46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443
No 485
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=86.19 E-value=0.23 Score=46.77 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=8.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 11 i~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEECCCCC----------
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999998875
No 486
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=86.13 E-value=0.36 Score=46.29 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=0.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 23 i~~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 23 CVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 487
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.12 E-value=0.4 Score=48.49 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
.++..+|+||.|+|||++..+|...++
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
No 488
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.94 E-value=10 Score=29.25 Aligned_cols=76 Identities=8% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001328 694 LDQKITEHVTEQQKTDAKRAHDKSELEQLKQDIANANKQKQIISKALENKEKSLADVRTQLDQLEASMAMKQAEMN 769 (1099)
Q Consensus 694 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~ 769 (1099)
+...+..+..+......+...+...+.........+...+..+...+..++..+......+......+........
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~~ 79 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKAT 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 489
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=85.91 E-value=0.42 Score=51.41 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLS 50 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg 50 (1099)
++..+|+||.|+|||+++.++.-.++
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
No 490
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=85.88 E-value=0.3 Score=53.69 Aligned_cols=38 Identities=29% Similarity=0.417 Sum_probs=0.0
Q ss_pred cccccccccccccCCCC-cEEEEcCCCCChhHHHHHHHHHh
Q 001328 10 GFKSYREQIATEPFSPQ-VNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 10 ~f~sf~~~~~~~~f~~~-~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
||..+...+ - .|.|| +++|+||.|+|||++.-.|.+..
T Consensus 186 G~~~LD~~l-g-Gl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 186 GFKELDQLI-G-TLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp SCHHHHHHH-C-CCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCHhhhhhc-C-CcCCCcEEEEEeCCCCCHHHHHHHHHHHH
No 491
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=85.85 E-value=0.37 Score=50.82 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=0.0
Q ss_pred EEEcCCCCChhHHHHHHHHHhcccccccchhhhhhhhc
Q 001328 29 CVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLH 66 (1099)
Q Consensus 29 ~I~G~NGsGKS~i~~ai~~~Lg~~~~~~~~~~~~~~i~ 66 (1099)
+|+|+.|||||||+..++...++............+|+
T Consensus 37 lllG~~~SGKST~~kq~~i~~~~~~~~~e~~~~~~~i~ 74 (362)
T 1zcb_A 37 LLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIY 74 (362)
T ss_dssp EEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCCCcccHHHHHHHHH
No 492
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=85.80 E-value=0.37 Score=46.51 Aligned_cols=18 Identities=22% Similarity=0.528 Sum_probs=0.0
Q ss_pred EEEEcCCCCChhHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAI 45 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai 45 (1099)
.+|+|+.|+|||||+..+
T Consensus 40 VvlvG~~~vGKSSLl~r~ 57 (211)
T 2g3y_A 40 VVLIGEQGVGKSTLANIF 57 (211)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
No 493
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.70 E-value=0.37 Score=47.86 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=0.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHhcc
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRFVLSD 51 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~~Lg~ 51 (1099)
|-+.+|.|+-||||||+...+.-.|.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCC
No 494
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=85.69 E-value=0.37 Score=46.14 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=0.0
Q ss_pred EEEEcCCCCChhHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAI 45 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai 45 (1099)
.+|+|+.|+|||||+.++
T Consensus 20 i~v~G~~~~GKSsl~~~l 37 (199)
T 4bas_A 20 VVMCGLDNSGKTTIINQV 37 (199)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
No 495
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=85.67 E-value=0.38 Score=46.20 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=0.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 28 i~vvG~~~~GKSsli~~l~ 46 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFS 46 (201)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 496
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=85.61 E-value=0.3 Score=45.74 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=0.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+..+.
T Consensus 10 i~~vG~~~vGKTsli~~l~ 28 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFL 28 (178)
T ss_dssp EEEECCGGGCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 497
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=85.57 E-value=0.39 Score=48.80 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=0.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHH
Q 001328 25 PQVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 25 ~~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
+.+++|+||.|||||+|.-++.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
No 498
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=85.57 E-value=0.4 Score=46.59 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=0.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 001328 28 NCVVGANGSGKTNFFHAIR 46 (1099)
Q Consensus 28 ~~I~G~NGsGKS~i~~ai~ 46 (1099)
.+|+|+.|+|||||+.++.
T Consensus 10 i~vvG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 10 VLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
No 499
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.54 E-value=0.43 Score=49.87 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHH
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRF 47 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~ 47 (1099)
.+.+++|+||+|||||++.-.+..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHH
No 500
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=85.49 E-value=0.36 Score=49.59 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHh
Q 001328 24 SPQVNCVVGANGSGKTNFFHAIRFVL 49 (1099)
Q Consensus 24 ~~~~~~I~G~NGsGKS~i~~ai~~~L 49 (1099)
.|+..+|+||.|+|||+++.++.--|
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Done!