Query 001329
Match_columns 1099
No_of_seqs 741 out of 4260
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 21:58:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0064 Peroxisomal long-chain 100.0 7E-93 1.5E-97 797.8 27.8 352 729-1080 88-446 (728)
2 KOG0058 Peptide exporter, ABC 100.0 1.7E-76 3.8E-81 696.9 61.0 530 85-650 132-678 (716)
3 KOG0060 Long-chain acyl-CoA tr 100.0 6.7E-77 1.5E-81 679.5 51.3 630 24-661 2-653 (659)
4 TIGR00954 3a01203 Peroxysomal 100.0 1.5E-69 3.1E-74 669.0 73.0 562 85-654 76-658 (659)
5 COG2274 SunT ABC-type bacterio 100.0 2.7E-66 5.9E-71 633.4 65.8 529 87-650 141-683 (709)
6 KOG0055 Multidrug/pheromone ex 100.0 1.5E-66 3.2E-71 642.6 62.1 545 86-663 650-1210(1228)
7 PRK11174 cysteine/glutathione 100.0 2.8E-65 6.1E-70 626.6 68.4 532 88-650 10-559 (588)
8 TIGR00958 3a01208 Conjugate Tr 100.0 1.2E-64 2.6E-69 631.9 67.9 530 85-650 146-689 (711)
9 COG4178 ABC-type uncharacteriz 100.0 2.9E-65 6.2E-70 602.2 58.7 543 88-653 26-592 (604)
10 KOG0055 Multidrug/pheromone ex 100.0 6.4E-64 1.4E-68 619.3 67.8 529 86-650 13-563 (1228)
11 KOG0060 Long-chain acyl-CoA tr 100.0 2.7E-68 5.8E-73 609.0 23.7 346 734-1082 57-403 (659)
12 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.9E-63 6.3E-68 621.0 69.3 535 87-650 141-687 (710)
13 TIGR02868 CydC thiol reductant 100.0 2.6E-63 5.6E-68 601.9 65.9 515 89-635 2-529 (529)
14 TIGR01193 bacteriocin_ABC ABC- 100.0 3.2E-63 6.8E-68 620.3 68.5 531 86-650 142-684 (708)
15 PTZ00265 multidrug resistance 100.0 1.1E-61 2.4E-66 637.5 85.4 533 87-650 46-655 (1466)
16 PRK11160 cysteine/glutathione 100.0 5.7E-63 1.2E-67 603.6 67.0 529 88-650 4-549 (574)
17 TIGR03375 type_I_sec_LssB type 100.0 9.2E-63 2E-67 614.8 68.6 529 87-650 134-675 (694)
18 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 9.8E-63 2.1E-67 613.8 68.0 524 88-650 123-660 (686)
19 COG1132 MdlB ABC-type multidru 100.0 1.8E-62 3.9E-67 599.1 65.9 524 88-650 4-539 (567)
20 PRK11176 lipid transporter ATP 100.0 3.8E-62 8.2E-67 598.2 67.4 532 84-650 9-554 (582)
21 PRK10790 putative multidrug tr 100.0 1.5E-61 3.2E-66 594.0 67.9 533 82-650 5-550 (592)
22 KOG0064 Peroxisomal long-chain 100.0 2E-63 4.4E-68 560.1 45.6 578 77-660 90-694 (728)
23 COG4987 CydC ABC-type transpor 100.0 1.4E-61 3.1E-66 552.9 58.0 526 91-650 4-548 (573)
24 TIGR02857 CydD thiol reductant 100.0 5E-61 1.1E-65 581.9 65.8 511 107-647 5-529 (529)
25 PRK13657 cyclic beta-1,2-gluca 100.0 6.6E-61 1.4E-65 587.7 66.9 528 86-650 5-545 (588)
26 TIGR02203 MsbA_lipidA lipid A 100.0 8.1E-61 1.8E-65 585.2 66.7 527 89-650 3-543 (571)
27 TIGR01192 chvA glucan exporter 100.0 2.5E-60 5.5E-65 581.3 68.3 527 87-650 6-545 (585)
28 TIGR01846 type_I_sec_HlyB type 100.0 1.6E-60 3.4E-65 594.6 66.8 527 87-650 126-667 (694)
29 PTZ00265 multidrug resistance 100.0 5.5E-61 1.2E-65 630.9 65.7 531 87-649 812-1433(1466)
30 TIGR02204 MsbA_rel ABC transpo 100.0 1.4E-59 3.1E-64 574.8 67.2 530 87-650 5-550 (576)
31 COG4988 CydD ABC-type transpor 100.0 3.9E-59 8.5E-64 541.7 63.9 500 123-650 18-530 (559)
32 PRK10789 putative multidrug tr 100.0 6.4E-59 1.4E-63 567.6 63.0 504 118-650 8-525 (569)
33 KOG0057 Mitochondrial Fe/S clu 100.0 3.4E-59 7.5E-64 533.5 56.1 535 85-651 10-562 (591)
34 TIGR01842 type_I_sec_PrtD type 100.0 1.3E-57 2.9E-62 553.6 66.6 506 107-650 8-529 (544)
35 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.8E-57 8.2E-62 550.4 61.3 522 88-650 5-546 (555)
36 TIGR00957 MRP_assoc_pro multi 100.0 6.4E-57 1.4E-61 598.1 64.7 449 177-650 1034-1495(1522)
37 PLN03130 ABC transporter C fam 100.0 1E-56 2.2E-61 595.7 65.3 461 166-650 971-1448(1622)
38 KOG0056 Heavy metal exporter H 100.0 3.1E-59 6.8E-64 520.8 32.7 535 86-650 196-748 (790)
39 PTZ00243 ABC transporter; Prov 100.0 7E-56 1.5E-60 587.0 67.6 454 179-650 1029-1520(1560)
40 PLN03232 ABC transporter C fam 100.0 9.7E-56 2.1E-60 586.1 65.2 458 171-650 973-1445(1495)
41 PLN03232 ABC transporter C fam 100.0 1.4E-52 3.1E-57 556.0 91.5 498 107-650 303-815 (1495)
42 PLN03130 ABC transporter C fam 100.0 5.7E-52 1.2E-56 550.5 90.8 499 107-650 303-815 (1622)
43 PRK10522 multidrug transporter 100.0 1.6E-54 3.4E-59 526.9 60.8 509 91-650 4-525 (547)
44 TIGR01271 CFTR_protein cystic 100.0 3.8E-53 8.2E-58 560.6 64.8 456 171-650 948-1427(1490)
45 TIGR00957 MRP_assoc_pro multi 100.0 6E-50 1.3E-54 531.7 89.1 506 107-650 319-837 (1522)
46 PF06472 ABC_membrane_2: ABC t 100.0 2.7E-56 5.8E-61 498.2 19.9 278 736-1013 4-281 (281)
47 KOG0054 Multidrug resistance-a 100.0 1.2E-52 2.7E-57 530.7 54.1 470 149-650 863-1349(1381)
48 COG4618 ArpD ABC-type protease 100.0 1.1E-50 2.5E-55 459.3 53.1 494 118-650 36-547 (580)
49 COG5265 ATM1 ABC-type transpor 100.0 9E-52 1.9E-56 459.1 36.9 445 179-650 13-473 (497)
50 TIGR01271 CFTR_protein cystic 100.0 1.5E-46 3.3E-51 497.9 85.2 495 110-650 85-623 (1490)
51 PTZ00243 ABC transporter; Prov 100.0 1E-45 2.2E-50 490.4 89.0 508 107-650 246-857 (1560)
52 COG0444 DppD ABC-type dipeptid 100.0 5E-52 1.1E-56 455.3 20.4 272 445-765 2-313 (316)
53 COG1126 GlnQ ABC-type polar am 100.0 2.9E-50 6.2E-55 416.0 18.0 224 444-715 2-238 (240)
54 COG1124 DppF ABC-type dipeptid 100.0 1.5E-49 3.3E-54 418.6 20.1 228 444-720 3-249 (252)
55 COG1135 AbcC ABC-type metal io 100.0 2.4E-49 5.3E-54 427.8 17.4 227 444-717 1-246 (339)
56 KOG0054 Multidrug resistance-a 100.0 4.5E-43 9.7E-48 444.2 72.8 502 118-664 214-729 (1381)
57 PRK15079 oligopeptide ABC tran 100.0 1.8E-46 4E-51 427.6 22.8 274 443-764 7-325 (331)
58 PRK11308 dppF dipeptide transp 100.0 3E-46 6.6E-51 425.4 23.4 274 443-764 4-316 (327)
59 COG1116 TauB ABC-type nitrate/ 100.0 9E-46 2E-50 393.7 21.8 199 444-651 3-208 (248)
60 PRK11022 dppD dipeptide transp 100.0 1E-45 2.2E-50 421.0 22.4 274 444-765 3-315 (326)
61 COG4608 AppF ABC-type oligopep 100.0 5.1E-46 1.1E-50 400.4 16.7 233 443-753 3-262 (268)
62 PRK09473 oppD oligopeptide tra 100.0 2.4E-45 5.3E-50 418.4 22.2 275 443-765 11-323 (330)
63 COG1123 ATPase components of v 100.0 1.7E-45 3.6E-50 430.1 20.5 233 442-721 278-538 (539)
64 COG1117 PstB ABC-type phosphat 100.0 1E-45 2.2E-50 380.4 14.6 228 443-714 6-249 (253)
65 PRK15093 antimicrobial peptide 100.0 1.6E-44 3.6E-49 412.2 22.4 273 444-765 3-322 (330)
66 COG1125 OpuBA ABC-type proline 100.0 3.4E-45 7.3E-50 384.8 15.1 198 444-650 1-212 (309)
67 COG2884 FtsE Predicted ATPase 100.0 1.9E-44 4.1E-49 365.0 17.0 199 444-650 1-213 (223)
68 COG1136 SalX ABC-type antimicr 100.0 3.7E-44 8E-49 381.3 19.8 199 445-651 2-219 (226)
69 COG1123 ATPase components of v 100.0 6.3E-44 1.4E-48 416.9 19.3 233 443-722 4-264 (539)
70 COG1120 FepC ABC-type cobalami 100.0 4.5E-43 9.8E-48 379.8 21.0 198 444-650 2-215 (258)
71 COG1127 Ttg2A ABC-type transpo 100.0 2.2E-43 4.7E-48 370.2 16.8 200 442-650 6-222 (263)
72 COG4172 ABC-type uncharacteriz 100.0 5.8E-43 1.2E-47 386.1 20.6 229 442-718 274-532 (534)
73 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.9E-42 4.1E-47 373.0 22.4 199 443-650 3-215 (254)
74 TIGR02314 ABC_MetN D-methionin 100.0 7.9E-43 1.7E-47 398.5 20.1 226 444-716 1-244 (343)
75 COG3839 MalK ABC-type sugar tr 100.0 1.6E-42 3.5E-47 388.7 19.7 197 444-649 3-209 (338)
76 COG3842 PotA ABC-type spermidi 100.0 1.2E-42 2.7E-47 391.5 16.5 199 443-650 4-213 (352)
77 COG3638 ABC-type phosphate/pho 100.0 3.2E-42 6.9E-47 360.6 17.8 199 444-650 3-224 (258)
78 PRK10261 glutathione transport 100.0 7E-42 1.5E-46 421.1 23.3 271 443-765 312-614 (623)
79 COG1122 CbiO ABC-type cobalt t 100.0 9.8E-42 2.1E-46 368.8 19.7 199 444-650 3-215 (235)
80 PRK11650 ugpC glycerol-3-phosp 100.0 3.4E-41 7.3E-46 387.8 21.3 199 444-650 3-211 (356)
81 COG4172 ABC-type uncharacteriz 100.0 2.3E-41 5E-46 373.5 17.0 232 442-720 4-265 (534)
82 TIGR00960 3a0501s02 Type II (G 100.0 6.8E-41 1.5E-45 360.2 20.2 198 445-650 2-214 (216)
83 COG1118 CysA ABC-type sulfate/ 100.0 2.4E-41 5.2E-46 364.9 16.6 198 444-650 2-214 (345)
84 PRK11432 fbpC ferric transport 100.0 1.1E-40 2.4E-45 382.5 20.8 199 443-650 5-213 (351)
85 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.1E-40 4.5E-45 356.8 20.0 198 445-650 1-216 (218)
86 cd03296 ABC_CysA_sulfate_impor 100.0 5.6E-40 1.2E-44 358.6 21.4 198 444-650 2-213 (239)
87 TIGR03265 PhnT2 putative 2-ami 100.0 3E-40 6.5E-45 379.5 19.9 198 444-650 4-211 (353)
88 cd03226 ABC_cobalt_CbiO_domain 100.0 6.1E-40 1.3E-44 350.1 20.9 193 446-650 1-202 (205)
89 PRK11153 metN DL-methionine tr 100.0 4E-40 8.7E-45 377.8 20.9 199 444-650 1-217 (343)
90 cd03293 ABC_NrtD_SsuB_transpor 100.0 7.5E-40 1.6E-44 353.2 21.7 200 445-652 1-211 (220)
91 PRK14257 phosphate ABC transpo 100.0 6.7E-40 1.4E-44 373.5 21.8 206 441-650 77-300 (329)
92 PRK10851 sulfate/thiosulfate t 100.0 6E-40 1.3E-44 377.0 21.5 198 444-650 2-213 (353)
93 PRK09452 potA putrescine/sperm 100.0 5.4E-40 1.2E-44 379.4 21.1 200 442-650 12-221 (375)
94 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.5E-39 3.2E-44 361.9 23.2 199 444-650 2-212 (275)
95 TIGR02673 FtsE cell division A 100.0 6.5E-40 1.4E-44 351.9 19.7 198 445-650 2-213 (214)
96 cd03259 ABC_Carb_Solutes_like 100.0 6.2E-40 1.3E-44 352.0 19.4 197 445-650 1-207 (213)
97 PRK13647 cbiO cobalt transport 100.0 7.6E-40 1.7E-44 364.8 20.9 199 444-650 4-214 (274)
98 cd03261 ABC_Org_Solvent_Resist 100.0 6.8E-40 1.5E-44 357.0 20.0 197 445-650 1-213 (235)
99 cd03292 ABC_FtsE_transporter F 100.0 8.2E-40 1.8E-44 351.0 19.6 198 445-650 1-212 (214)
100 COG4181 Predicted ABC-type tra 100.0 8.4E-40 1.8E-44 325.3 17.3 200 443-650 5-222 (228)
101 cd03225 ABC_cobalt_CbiO_domain 100.0 9.3E-40 2E-44 350.0 18.8 197 446-650 1-210 (211)
102 PRK11607 potG putrescine trans 100.0 1.7E-39 3.6E-44 375.9 22.1 200 442-650 17-226 (377)
103 TIGR03258 PhnT 2-aminoethylpho 100.0 9.6E-40 2.1E-44 376.0 19.9 199 443-650 4-215 (362)
104 COG3840 ThiQ ABC-type thiamine 100.0 1.2E-39 2.5E-44 327.5 17.9 195 445-650 2-206 (231)
105 cd03235 ABC_Metallic_Cations A 100.0 1.6E-39 3.5E-44 348.7 20.3 195 446-649 1-207 (213)
106 TIGR02211 LolD_lipo_ex lipopro 100.0 1.7E-39 3.7E-44 350.4 20.4 198 445-650 2-217 (221)
107 PRK14250 phosphate ABC transpo 100.0 3.2E-39 6.9E-44 353.3 22.6 194 444-650 3-208 (241)
108 PRK11629 lolD lipoprotein tran 100.0 2.8E-39 6E-44 351.8 21.9 200 443-650 4-221 (233)
109 PRK13650 cbiO cobalt transport 100.0 2.1E-39 4.6E-44 362.2 21.1 199 444-650 4-216 (279)
110 PRK13637 cbiO cobalt transport 100.0 2.3E-39 5.1E-44 363.2 21.0 198 445-650 3-221 (287)
111 TIGR02769 nickel_nikE nickel i 100.0 2.6E-39 5.6E-44 358.9 21.1 199 444-650 2-227 (265)
112 cd03266 ABC_NatA_sodium_export 100.0 2E-39 4.4E-44 349.1 19.5 198 445-650 2-212 (218)
113 PRK10908 cell division protein 100.0 3.3E-39 7.2E-44 348.6 21.3 198 445-650 2-213 (222)
114 PRK13631 cbiO cobalt transport 100.0 3.3E-39 7.1E-44 366.7 22.0 201 442-650 19-252 (320)
115 cd03301 ABC_MalK_N The N-termi 100.0 3.4E-39 7.3E-44 346.1 20.5 197 445-650 1-207 (213)
116 TIGR02315 ABC_phnC phosphonate 100.0 4.2E-39 9.2E-44 352.3 21.5 198 445-650 2-222 (243)
117 cd03263 ABC_subfamily_A The AB 100.0 2.6E-39 5.6E-44 348.8 19.4 198 445-650 1-208 (220)
118 PRK11000 maltose/maltodextrin 100.0 2.5E-39 5.3E-44 374.5 20.6 198 444-650 3-210 (369)
119 TIGR01186 proV glycine betaine 100.0 1.5E-39 3.3E-44 373.6 18.6 187 456-650 4-206 (363)
120 PRK14273 phosphate ABC transpo 100.0 4.1E-39 8.8E-44 355.0 21.0 199 443-650 6-225 (254)
121 cd03223 ABCD_peroxisomal_ALDP 100.0 6.9E-39 1.5E-43 331.2 21.3 166 445-653 1-166 (166)
122 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.4E-39 5.1E-44 360.0 19.1 196 446-650 26-237 (269)
123 PRK11248 tauB taurine transpor 100.0 8.2E-39 1.8E-43 352.9 23.1 196 445-649 2-204 (255)
124 cd03256 ABC_PhnC_transporter A 100.0 5.3E-39 1.2E-43 350.9 21.2 198 445-650 1-221 (241)
125 PRK10584 putative ABC transpor 100.0 6.8E-39 1.5E-43 347.5 21.9 200 443-650 5-222 (228)
126 TIGR00972 3a0107s01c2 phosphat 100.0 4.4E-39 9.6E-44 353.3 20.4 198 444-650 1-219 (247)
127 cd03265 ABC_DrrA DrrA is the A 100.0 4.2E-39 9.2E-44 347.3 19.5 197 445-650 1-208 (220)
128 PRK13643 cbiO cobalt transport 100.0 4.5E-39 9.8E-44 361.1 20.4 199 444-650 1-220 (288)
129 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.3E-39 9.4E-44 352.3 19.6 198 445-650 1-212 (242)
130 PRK11247 ssuB aliphatic sulfon 100.0 1.3E-38 2.9E-43 351.4 23.6 193 443-650 11-210 (257)
131 PRK13651 cobalt transporter AT 100.0 5.7E-39 1.2E-43 362.6 21.1 199 444-650 2-241 (305)
132 cd03269 ABC_putative_ATPase Th 100.0 5.7E-39 1.2E-43 343.8 20.0 197 445-650 1-204 (210)
133 cd03264 ABC_drug_resistance_li 100.0 4.7E-39 1E-43 344.6 19.3 196 445-650 1-205 (211)
134 cd03252 ABCC_Hemolysin The ABC 100.0 1.6E-38 3.5E-43 346.5 23.8 200 445-650 1-212 (237)
135 PRK14268 phosphate ABC transpo 100.0 5.5E-39 1.2E-43 354.9 20.3 200 442-650 10-229 (258)
136 PRK14259 phosphate ABC transpo 100.0 9.3E-39 2E-43 355.2 22.1 236 442-715 11-266 (269)
137 TIGR03005 ectoine_ehuA ectoine 100.0 6.6E-39 1.4E-43 353.0 20.4 197 445-650 1-223 (252)
138 PRK13636 cbiO cobalt transport 100.0 7.4E-39 1.6E-43 358.5 21.1 200 443-650 4-218 (283)
139 COG4175 ProV ABC-type proline/ 100.0 2.4E-39 5.1E-44 349.3 16.4 184 459-650 42-241 (386)
140 cd03268 ABC_BcrA_bacitracin_re 100.0 9.6E-39 2.1E-43 341.5 21.0 193 445-650 1-202 (208)
141 cd03254 ABCC_Glucan_exporter_l 100.0 1.8E-38 3.9E-43 344.2 23.2 201 444-650 2-213 (229)
142 PRK09493 glnQ glutamine ABC tr 100.0 8.1E-39 1.8E-43 349.6 20.5 197 445-650 2-212 (240)
143 PRK13537 nodulation ABC transp 100.0 7E-39 1.5E-43 362.3 20.6 199 443-650 6-214 (306)
144 PRK13644 cbiO cobalt transport 100.0 8.4E-39 1.8E-43 356.5 20.9 198 445-650 2-211 (274)
145 PRK13646 cbiO cobalt transport 100.0 7.1E-39 1.5E-43 359.2 20.1 199 444-650 2-222 (286)
146 PRK13635 cbiO cobalt transport 100.0 1.1E-38 2.3E-43 356.5 21.3 200 443-650 4-216 (279)
147 cd03244 ABCC_MRP_domain2 Domai 100.0 2.8E-38 6.1E-43 340.9 23.6 200 444-650 2-213 (221)
148 cd03258 ABC_MetN_methionine_tr 100.0 9.8E-39 2.1E-43 347.4 20.2 198 445-650 2-217 (233)
149 cd03245 ABCC_bacteriocin_expor 100.0 2.9E-38 6.3E-43 340.6 23.7 201 444-650 2-214 (220)
150 PRK13634 cbiO cobalt transport 100.0 8.4E-39 1.8E-43 359.3 20.2 198 445-650 3-222 (290)
151 cd03262 ABC_HisP_GlnQ_permease 100.0 9.7E-39 2.1E-43 342.4 19.8 197 445-650 1-211 (213)
152 PRK11264 putative amino-acid A 100.0 8.5E-39 1.8E-43 351.5 19.7 198 444-650 3-220 (250)
153 cd03260 ABC_PstB_phosphate_tra 100.0 1.2E-38 2.6E-43 345.3 20.5 199 445-650 1-216 (227)
154 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.2E-38 2.5E-43 347.7 20.3 198 444-650 1-208 (236)
155 PRK13632 cbiO cobalt transport 100.0 1.3E-38 2.8E-43 354.4 21.0 200 443-650 6-218 (271)
156 cd03219 ABC_Mj1267_LivG_branch 100.0 8E-39 1.7E-43 348.6 18.8 197 445-650 1-219 (236)
157 PRK10744 pstB phosphate transp 100.0 1.9E-38 4.1E-43 351.0 21.5 200 442-650 11-231 (260)
158 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.4E-38 5.3E-43 339.1 21.6 195 445-650 1-205 (211)
159 PRK14269 phosphate ABC transpo 100.0 1.6E-38 3.4E-43 348.8 20.4 202 444-650 2-217 (246)
160 PRK13652 cbiO cobalt transport 100.0 2E-38 4.3E-43 354.1 21.1 199 444-650 3-214 (277)
161 COG1131 CcmA ABC-type multidru 100.0 1.2E-38 2.6E-43 357.6 19.5 199 444-650 4-213 (293)
162 cd03218 ABC_YhbG The ABC trans 100.0 1.5E-38 3.2E-43 345.6 19.5 197 445-650 1-209 (232)
163 PRK10619 histidine/lysine/argi 100.0 2E-38 4.4E-43 350.1 20.7 200 442-650 3-228 (257)
164 cd03257 ABC_NikE_OppD_transpor 100.0 2.7E-38 5.9E-43 342.3 21.2 198 445-650 2-222 (228)
165 PRK10070 glycine betaine trans 100.0 1.9E-38 4.2E-43 368.4 21.4 184 459-650 42-241 (400)
166 cd03250 ABCC_MRP_domain1 Domai 100.0 7.5E-38 1.6E-42 333.7 24.2 192 445-650 1-203 (204)
167 TIGR01288 nodI ATP-binding ABC 100.0 1.9E-38 4E-43 358.6 20.5 199 443-650 3-211 (303)
168 PRK10247 putative ABC transpor 100.0 3.4E-38 7.4E-43 341.7 21.5 198 443-651 6-214 (225)
169 PRK13633 cobalt transporter AT 100.0 2.7E-38 5.8E-43 353.5 21.3 200 443-650 3-220 (280)
170 PRK14242 phosphate transporter 100.0 2.3E-38 5E-43 348.7 20.4 199 443-650 5-224 (253)
171 cd03253 ABCC_ATM1_transporter 100.0 6.3E-38 1.4E-42 341.5 23.4 200 445-650 1-211 (236)
172 cd03224 ABC_TM1139_LivF_branch 100.0 3E-38 6.6E-43 340.7 19.9 195 445-650 1-208 (222)
173 PRK09536 btuD corrinoid ABC tr 100.0 3.9E-38 8.5E-43 366.1 22.3 198 444-650 3-215 (402)
174 TIGR03608 L_ocin_972_ABC putat 100.0 1.8E-38 4E-43 338.6 17.4 192 447-647 1-206 (206)
175 PRK14256 phosphate ABC transpo 100.0 5E-38 1.1E-42 345.9 21.4 199 443-650 3-223 (252)
176 PRK13638 cbiO cobalt transport 100.0 3.3E-38 7.2E-43 351.2 19.8 198 444-650 1-212 (271)
177 PRK13639 cbiO cobalt transport 100.0 3.7E-38 8E-43 351.5 20.2 198 445-650 2-213 (275)
178 PRK14243 phosphate transporter 100.0 4.9E-38 1.1E-42 348.6 21.0 237 443-715 9-261 (264)
179 PRK11831 putative ABC transpor 100.0 4.3E-38 9.3E-43 349.9 20.5 199 443-650 6-220 (269)
180 PRK14247 phosphate ABC transpo 100.0 4.4E-38 9.6E-43 345.9 20.4 198 444-650 3-221 (250)
181 PRK13640 cbiO cobalt transport 100.0 4.4E-38 9.4E-43 352.2 20.7 200 443-650 4-219 (282)
182 COG4555 NatA ABC-type Na+ tran 100.0 6.9E-39 1.5E-43 327.0 12.8 199 444-650 1-209 (245)
183 PRK13536 nodulation factor exp 100.0 4E-38 8.7E-43 360.2 20.6 199 443-650 40-248 (340)
184 cd03251 ABCC_MsbA MsbA is an e 100.0 1E-37 2.3E-42 339.4 22.9 200 445-650 1-212 (234)
185 PRK14235 phosphate transporter 100.0 5.6E-38 1.2E-42 348.6 21.1 200 442-650 17-238 (267)
186 TIGR03415 ABC_choXWV_ATP choli 100.0 3.5E-38 7.6E-43 363.9 20.2 186 457-650 36-241 (382)
187 PRK13641 cbiO cobalt transport 100.0 4.3E-38 9.4E-43 353.0 20.4 199 444-650 2-221 (287)
188 TIGR01277 thiQ thiamine ABC tr 100.0 8.7E-38 1.9E-42 335.6 21.7 195 445-650 1-205 (213)
189 PRK14274 phosphate ABC transpo 100.0 6.2E-38 1.3E-42 346.7 20.9 199 443-650 11-230 (259)
190 TIGR00968 3a0106s01 sulfate AB 100.0 5.5E-38 1.2E-42 342.7 20.1 197 445-650 1-207 (237)
191 PRK15112 antimicrobial peptide 100.0 6.4E-38 1.4E-42 348.1 20.9 200 443-650 3-226 (267)
192 PRK13648 cbiO cobalt transport 100.0 6.1E-38 1.3E-42 348.7 20.8 200 443-650 6-218 (269)
193 PRK14248 phosphate ABC transpo 100.0 8.1E-38 1.8E-42 347.5 21.7 199 443-650 20-239 (268)
194 PRK13642 cbiO cobalt transport 100.0 6.4E-38 1.4E-42 349.9 21.0 199 444-650 4-216 (277)
195 PRK14251 phosphate ABC transpo 100.0 6.4E-38 1.4E-42 344.9 20.5 198 444-650 4-222 (251)
196 PRK14265 phosphate ABC transpo 100.0 9.9E-38 2.2E-42 347.9 22.2 234 442-715 18-271 (274)
197 PRK10575 iron-hydroxamate tran 100.0 1.2E-37 2.6E-42 345.6 22.6 200 442-650 9-224 (265)
198 PRK14241 phosphate transporter 100.0 5.7E-38 1.2E-42 346.8 20.0 197 444-649 4-222 (258)
199 cd03248 ABCC_TAP TAP, the Tran 100.0 1.6E-37 3.5E-42 336.3 23.2 203 442-650 9-224 (226)
200 PRK13649 cbiO cobalt transport 100.0 5.8E-38 1.3E-42 350.8 20.3 198 445-650 3-221 (280)
201 PRK14245 phosphate ABC transpo 100.0 8.4E-38 1.8E-42 343.8 21.0 199 443-650 2-221 (250)
202 PRK14237 phosphate transporter 100.0 8.9E-38 1.9E-42 347.0 21.4 200 442-650 18-238 (267)
203 PRK13548 hmuV hemin importer A 100.0 1.4E-37 2.9E-42 343.9 22.6 198 444-650 2-217 (258)
204 PRK13645 cbiO cobalt transport 100.0 7E-38 1.5E-42 351.7 20.5 200 443-650 5-227 (289)
205 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.6E-37 3.5E-42 338.9 22.4 200 445-650 1-213 (238)
206 PRK14270 phosphate ABC transpo 100.0 9.9E-38 2.1E-42 343.4 20.7 199 443-650 3-222 (251)
207 TIGR02982 heterocyst_DevA ABC 100.0 8.8E-38 1.9E-42 337.2 19.9 198 445-650 2-217 (220)
208 COG4525 TauB ABC-type taurine 100.0 3.9E-38 8.5E-43 319.4 15.9 205 444-656 3-215 (259)
209 TIGR03411 urea_trans_UrtD urea 100.0 1.3E-37 2.9E-42 340.4 21.3 198 444-650 2-218 (242)
210 PRK11701 phnK phosphonate C-P 100.0 1.4E-37 3E-42 343.8 21.5 199 443-650 5-228 (258)
211 PRK11124 artP arginine transpo 100.0 1.1E-37 2.4E-42 341.1 20.5 198 444-650 2-217 (242)
212 PRK14239 phosphate transporter 100.0 1.5E-37 3.2E-42 342.0 21.4 199 443-650 4-223 (252)
213 cd03288 ABCC_SUR2 The SUR doma 100.0 3.1E-37 6.6E-42 340.8 23.9 202 442-650 17-230 (257)
214 cd03290 ABCC_SUR1_N The SUR do 100.0 3.6E-37 7.8E-42 331.9 23.8 198 446-650 2-217 (218)
215 cd03300 ABC_PotA_N PotA is an 100.0 8E-38 1.7E-42 340.2 19.0 197 445-650 1-207 (232)
216 TIGR03522 GldA_ABC_ATP gliding 100.0 9E-38 1.9E-42 352.7 19.8 198 444-650 2-208 (301)
217 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.9E-37 6.3E-42 330.0 22.5 187 442-650 4-199 (207)
218 PRK14244 phosphate ABC transpo 100.0 1.2E-37 2.6E-42 342.8 20.1 197 445-650 6-224 (251)
219 PRK10419 nikE nickel transport 100.0 1.6E-37 3.5E-42 345.1 21.3 199 444-650 3-228 (268)
220 PRK10771 thiQ thiamine transpo 100.0 3.2E-37 7E-42 335.5 23.0 195 445-650 2-206 (232)
221 PRK14240 phosphate transporter 100.0 1.6E-37 3.4E-42 341.5 20.7 198 444-650 3-221 (250)
222 PRK14267 phosphate ABC transpo 100.0 1.2E-37 2.7E-42 342.9 19.7 198 444-650 4-224 (253)
223 PRK14238 phosphate transporter 100.0 1.7E-37 3.6E-42 345.5 20.9 200 442-650 22-242 (271)
224 PRK11231 fecE iron-dicitrate t 100.0 2.6E-37 5.6E-42 341.0 22.0 198 444-650 2-214 (255)
225 PRK11300 livG leucine/isoleuci 100.0 2.6E-37 5.6E-42 340.7 21.6 199 443-650 4-230 (255)
226 PRK14253 phosphate ABC transpo 100.0 2E-37 4.3E-42 340.5 20.3 198 444-650 3-220 (249)
227 PRK14249 phosphate ABC transpo 100.0 3.3E-37 7.2E-42 339.2 21.8 199 443-650 3-222 (251)
228 PRK14271 phosphate ABC transpo 100.0 3.2E-37 6.9E-42 344.1 21.7 200 442-650 19-238 (276)
229 TIGR03410 urea_trans_UrtE urea 100.0 2.1E-37 4.5E-42 336.3 19.6 194 445-650 1-208 (230)
230 PRK14260 phosphate ABC transpo 100.0 2.2E-37 4.9E-42 342.3 19.8 198 443-649 6-224 (259)
231 TIGR01188 drrA daunorubicin re 100.0 1.1E-37 2.4E-42 352.1 17.7 186 457-650 5-200 (302)
232 PRK10895 lipopolysaccharide AB 100.0 3.3E-37 7.3E-42 337.1 20.8 198 444-650 3-213 (241)
233 PRK14261 phosphate ABC transpo 100.0 3.8E-37 8.2E-42 339.2 21.3 199 443-650 5-224 (253)
234 TIGR02323 CP_lyasePhnK phospho 100.0 4E-37 8.6E-42 338.9 21.3 198 444-650 3-225 (253)
235 PRK10261 glutathione transport 100.0 2E-37 4.4E-42 381.6 21.1 201 442-650 10-245 (623)
236 PRK14275 phosphate ABC transpo 100.0 3.2E-37 6.9E-42 345.8 20.7 200 442-650 37-257 (286)
237 TIGR03873 F420-0_ABC_ATP propo 100.0 4.3E-37 9.2E-42 339.4 21.4 197 445-650 2-213 (256)
238 PRK13538 cytochrome c biogenes 100.0 3.7E-37 8E-42 328.6 20.1 192 444-647 1-202 (204)
239 PRK14258 phosphate ABC transpo 100.0 3.8E-37 8.2E-42 340.9 20.7 199 443-650 6-227 (261)
240 TIGR00954 3a01203 Peroxysomal 100.0 2E-36 4.2E-41 374.6 29.3 343 735-1077 72-414 (659)
241 PRK10253 iron-enterobactin tra 100.0 6.4E-37 1.4E-41 339.8 22.0 199 443-650 6-220 (265)
242 PRK11614 livF leucine/isoleuci 100.0 5.6E-37 1.2E-41 334.6 20.5 196 444-650 5-213 (237)
243 cd03231 ABC_CcmA_heme_exporter 100.0 7.6E-37 1.7E-41 325.5 21.0 188 445-647 1-198 (201)
244 PRK14254 phosphate ABC transpo 100.0 1E-36 2.3E-41 341.4 22.9 198 442-649 37-255 (285)
245 PRK14252 phosphate ABC transpo 100.0 1E-36 2.2E-41 338.1 22.6 200 442-650 14-236 (265)
246 PRK14262 phosphate ABC transpo 100.0 6.4E-37 1.4E-41 336.7 20.7 198 444-650 3-221 (250)
247 COG4598 HisP ABC-type histidin 100.0 6.8E-38 1.5E-42 313.5 11.4 225 443-715 5-254 (256)
248 PRK10418 nikD nickel transport 100.0 9.3E-37 2E-41 336.4 21.6 195 444-650 4-217 (254)
249 TIGR01978 sufC FeS assembly AT 100.0 5.3E-37 1.1E-41 335.6 19.5 198 445-650 1-221 (243)
250 TIGR03740 galliderm_ABC gallid 100.0 9.6E-37 2.1E-41 329.7 21.1 193 445-650 1-200 (223)
251 cd03234 ABCG_White The White s 100.0 7.4E-37 1.6E-41 331.3 20.0 199 444-650 3-220 (226)
252 cd03246 ABCC_Protease_Secretio 100.0 9.2E-37 2E-41 317.3 19.6 161 445-650 1-171 (173)
253 PRK13540 cytochrome c biogenes 100.0 8.2E-37 1.8E-41 325.0 19.6 187 445-645 2-197 (200)
254 PRK14255 phosphate ABC transpo 100.0 9.1E-37 2E-41 335.9 20.6 199 443-650 4-223 (252)
255 PRK14236 phosphate transporter 100.0 1.2E-36 2.6E-41 338.8 21.7 200 442-650 23-243 (272)
256 TIGR01166 cbiO cobalt transpor 100.0 2.8E-37 6E-42 325.8 15.5 174 456-637 3-189 (190)
257 PRK14246 phosphate ABC transpo 100.0 1E-36 2.2E-41 336.7 20.5 200 442-650 8-228 (257)
258 cd03247 ABCC_cytochrome_bd The 100.0 1.2E-36 2.6E-41 317.9 19.5 164 445-650 1-172 (178)
259 PRK13543 cytochrome c biogenes 100.0 1.6E-36 3.4E-41 326.3 21.0 195 443-649 10-212 (214)
260 cd03299 ABC_ModC_like Archeal 100.0 1.3E-36 2.7E-41 331.6 20.4 196 445-650 1-206 (235)
261 PRK14263 phosphate ABC transpo 100.0 1.9E-36 4.2E-41 335.2 21.9 200 443-648 7-222 (261)
262 PRK14272 phosphate ABC transpo 100.0 1.3E-36 2.9E-41 334.5 20.4 198 444-650 4-223 (252)
263 PRK09984 phosphonate/organopho 100.0 1.9E-36 4.1E-41 335.4 21.7 199 443-650 3-229 (262)
264 PRK15056 manganese/iron transp 100.0 2.3E-36 5.1E-41 336.5 22.4 196 444-647 6-215 (272)
265 COG4615 PvdE ABC-type sideroph 100.0 6.8E-34 1.5E-38 313.3 41.2 446 163-650 67-524 (546)
266 PRK13539 cytochrome c biogenes 100.0 1.9E-36 4.1E-41 324.0 20.3 191 444-648 2-199 (207)
267 PRK13547 hmuV hemin importer A 100.0 2.2E-36 4.8E-41 336.5 21.5 197 445-650 2-231 (272)
268 PRK09544 znuC high-affinity zi 100.0 4.2E-36 9.2E-41 330.6 23.4 185 444-649 4-196 (251)
269 cd03297 ABC_ModC_molybdenum_tr 100.0 2E-36 4.3E-41 325.2 19.8 191 445-650 2-208 (214)
270 TIGR02324 CP_lyasePhnL phospho 100.0 2.4E-36 5.2E-41 326.7 20.3 196 445-648 2-223 (224)
271 PRK11144 modC molybdate transp 100.0 3.1E-36 6.8E-41 346.9 21.9 188 445-650 2-205 (352)
272 PRK14266 phosphate ABC transpo 100.0 4.1E-36 8.9E-41 330.3 20.9 202 444-650 3-221 (250)
273 TIGR01189 ccmA heme ABC export 100.0 2.8E-36 6E-41 320.3 18.7 187 445-645 1-196 (198)
274 COG4619 ABC-type uncharacteriz 100.0 8E-37 1.7E-41 303.2 13.4 186 456-650 14-210 (223)
275 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.7E-35 5.8E-40 328.9 27.0 192 442-650 37-234 (282)
276 cd03230 ABC_DR_subfamily_A Thi 100.0 6E-36 1.3E-40 311.2 20.4 161 445-650 1-171 (173)
277 TIGR02142 modC_ABC molybdenum 100.0 5.2E-36 1.1E-40 345.4 21.4 189 449-650 4-208 (354)
278 PRK15134 microcin C ABC transp 100.0 2.4E-36 5.2E-41 366.3 19.5 199 443-650 274-502 (529)
279 cd03267 ABC_NatA_like Similar 100.0 3.1E-36 6.6E-41 328.8 18.3 186 457-650 33-230 (236)
280 PRK14264 phosphate ABC transpo 100.0 8.7E-36 1.9E-40 337.1 21.5 199 442-649 43-275 (305)
281 cd03228 ABCC_MRP_Like The MRP 100.0 8E-36 1.7E-40 309.7 19.2 161 445-650 1-170 (171)
282 TIGR01184 ntrCD nitrate transp 100.0 5.3E-36 1.2E-40 325.7 18.6 182 461-650 1-191 (230)
283 cd03229 ABC_Class3 This class 100.0 1.1E-35 2.4E-40 310.7 19.8 163 445-650 1-177 (178)
284 PRK10762 D-ribose transporter 100.0 9.4E-36 2E-40 358.9 20.6 198 444-650 4-217 (501)
285 PRK15134 microcin C ABC transp 100.0 1.3E-35 2.9E-40 359.8 21.4 200 443-650 4-233 (529)
286 COG1137 YhbG ABC-type (unclass 100.0 1.4E-36 3.1E-41 309.8 10.6 198 444-650 4-215 (243)
287 PRK13549 xylose transporter AT 100.0 1.2E-35 2.5E-40 358.5 20.5 199 443-650 4-219 (506)
288 PRK13541 cytochrome c biogenes 100.0 1.9E-35 4.2E-40 313.2 19.6 185 445-644 2-192 (195)
289 PRK11288 araG L-arabinose tran 100.0 1.4E-35 3.1E-40 357.3 20.8 199 443-650 3-216 (501)
290 cd03215 ABC_Carb_Monos_II This 100.0 2.1E-35 4.5E-40 309.7 18.9 162 444-650 4-180 (182)
291 PRK09700 D-allose transporter 100.0 1.9E-35 4.1E-40 357.1 20.8 199 443-650 4-221 (510)
292 PRK15439 autoinducer 2 ABC tra 100.0 3.1E-35 6.7E-40 355.0 22.5 195 443-650 10-216 (510)
293 cd03232 ABC_PDR_domain2 The pl 100.0 2.5E-35 5.5E-40 311.7 19.0 171 444-651 3-186 (192)
294 CHL00131 ycf16 sulfate ABC tra 100.0 5.7E-35 1.2E-39 321.5 22.4 200 443-650 6-228 (252)
295 cd03213 ABCG_EPDR ABCG transpo 100.0 2.6E-35 5.7E-40 312.1 18.6 170 444-650 3-188 (194)
296 COG0411 LivG ABC-type branched 100.0 1.1E-35 2.4E-40 314.1 14.9 199 443-650 3-226 (250)
297 cd03214 ABC_Iron-Siderophores_ 100.0 2.4E-35 5.3E-40 308.6 16.2 163 446-650 1-174 (180)
298 COG4559 ABC-type hemin transpo 100.0 4.3E-35 9.4E-40 301.4 17.4 198 444-650 1-217 (259)
299 PRK09580 sufC cysteine desulfu 100.0 1.1E-34 2.4E-39 318.4 21.7 198 445-650 2-222 (248)
300 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.9E-35 1.1E-39 316.9 18.6 191 445-650 23-218 (224)
301 COG0410 LivF ABC-type branched 100.0 1.1E-34 2.5E-39 304.3 20.2 198 443-650 2-213 (237)
302 cd03233 ABC_PDR_domain1 The pl 100.0 8.5E-35 1.8E-39 310.1 19.7 176 444-650 3-196 (202)
303 TIGR02770 nickel_nikD nickel i 100.0 5.1E-35 1.1E-39 317.8 18.2 183 460-650 1-202 (230)
304 PRK10982 galactose/methyl gala 100.0 4.9E-35 1.1E-39 351.9 19.5 195 447-650 1-210 (491)
305 TIGR03269 met_CoM_red_A2 methy 100.0 8.1E-35 1.8E-39 352.4 20.2 197 445-650 1-245 (520)
306 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.4E-34 3.1E-39 317.4 20.2 182 452-651 1-193 (246)
307 PRK03695 vitamin B12-transport 100.0 1.1E-34 2.4E-39 318.9 19.2 190 446-650 2-209 (248)
308 TIGR02633 xylG D-xylose ABC tr 100.0 1E-34 2.2E-39 349.9 20.7 197 445-650 2-217 (500)
309 COG4161 ArtP ABC-type arginine 100.0 2.9E-35 6.2E-40 289.9 12.9 198 444-650 2-217 (242)
310 TIGR03269 met_CoM_red_A2 methy 100.0 1.2E-34 2.7E-39 350.7 21.2 199 443-650 278-504 (520)
311 PRK10535 macrolide transporter 100.0 1.5E-34 3.2E-39 357.5 21.4 199 444-650 4-219 (648)
312 cd03217 ABC_FeS_Assembly ABC-t 100.0 2E-34 4.3E-39 306.8 19.4 166 445-650 1-181 (200)
313 PRK10938 putative molybdenum t 100.0 1.4E-34 3E-39 347.9 20.3 190 444-650 3-211 (490)
314 COG4167 SapF ABC-type antimicr 100.0 7.3E-35 1.6E-39 292.3 14.6 227 444-717 4-254 (267)
315 PRK13549 xylose transporter AT 100.0 1.1E-34 2.3E-39 350.1 18.4 200 443-650 258-481 (506)
316 PRK11819 putative ABC transpor 100.0 3.2E-34 7E-39 349.4 21.6 194 443-650 5-236 (556)
317 PRK09700 D-allose transporter 100.0 2E-34 4.4E-39 348.1 19.3 197 443-650 264-485 (510)
318 PRK15064 ABC transporter ATP-b 100.0 4.5E-34 9.8E-39 346.5 22.3 192 445-650 2-228 (530)
319 COG4107 PhnK ABC-type phosphon 100.0 1.9E-34 4.1E-39 287.2 14.7 222 443-716 5-255 (258)
320 cd03216 ABC_Carb_Monos_I This 100.0 7E-34 1.5E-38 293.0 18.9 147 445-650 1-158 (163)
321 COG1129 MglA ABC-type sugar tr 100.0 5E-34 1.1E-38 332.1 19.9 199 443-650 7-221 (500)
322 COG4152 ABC-type uncharacteriz 100.0 8.3E-35 1.8E-39 304.7 11.7 198 444-650 2-206 (300)
323 TIGR02633 xylG D-xylose ABC tr 100.0 3.3E-34 7.1E-39 345.5 18.2 200 443-650 256-479 (500)
324 TIGR03771 anch_rpt_ABC anchore 100.0 6.9E-34 1.5E-38 307.7 18.5 174 466-647 1-186 (223)
325 PRK15064 ABC transporter ATP-b 100.0 1.7E-33 3.7E-38 341.6 23.9 189 443-650 318-511 (530)
326 PRK13546 teichoic acids export 100.0 1.5E-33 3.3E-38 312.3 20.8 178 458-650 37-219 (264)
327 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.7E-33 3.6E-38 343.0 22.8 195 443-653 321-519 (552)
328 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.3E-33 2.7E-38 344.1 21.8 202 444-650 4-234 (552)
329 PRK11819 putative ABC transpor 100.0 1.6E-33 3.5E-38 343.3 22.5 196 443-654 323-522 (556)
330 PRK13545 tagH teichoic acids e 100.0 2.6E-33 5.7E-38 329.2 22.6 194 442-650 19-219 (549)
331 TIGR01257 rim_protein retinal- 100.0 1.1E-33 2.3E-38 373.1 21.2 200 443-650 927-1136(2272)
332 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 5.4E-33 1.2E-37 280.7 19.5 142 445-650 1-143 (144)
333 PRK11288 araG L-arabinose tran 100.0 1.7E-33 3.6E-38 339.4 18.2 195 443-650 256-472 (501)
334 PRK10762 D-ribose transporter 100.0 1.7E-33 3.6E-38 339.4 17.9 194 443-650 256-471 (501)
335 TIGR01257 rim_protein retinal- 100.0 3.3E-33 7.1E-38 368.6 21.3 201 442-650 1935-2146(2272)
336 COG3845 ABC-type uncharacteriz 100.0 2.7E-33 5.9E-38 319.4 17.6 199 443-650 3-216 (501)
337 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.1E-33 6.7E-38 308.2 17.2 189 448-650 4-215 (255)
338 PRK10938 putative molybdenum t 100.0 3.1E-33 6.8E-38 336.2 18.6 200 442-650 258-479 (490)
339 PLN03211 ABC transporter G-25; 100.0 3.2E-33 6.9E-38 344.6 17.4 198 449-650 73-283 (659)
340 PRK11147 ABC transporter ATPas 100.0 1.7E-32 3.7E-37 338.9 23.6 202 443-660 318-523 (635)
341 TIGR01187 potA spermidine/putr 100.0 2.8E-33 6.1E-38 319.2 14.8 167 476-650 1-177 (325)
342 COG4148 ModC ABC-type molybdat 100.0 4.8E-33 1E-37 296.1 13.8 175 462-650 15-205 (352)
343 PRK10982 galactose/methyl gala 100.0 1.2E-32 2.7E-37 331.1 18.5 197 443-650 249-467 (491)
344 PRK13409 putative ATPase RIL; 100.0 3.2E-32 7E-37 331.9 22.3 185 443-649 339-529 (590)
345 TIGR00956 3a01205 Pleiotropic 100.0 8.6E-32 1.9E-36 355.0 27.5 207 444-654 759-983 (1394)
346 PRK15439 autoinducer 2 ABC tra 100.0 1.4E-32 3E-37 331.9 18.2 194 443-650 267-479 (510)
347 PRK10636 putative ABC transpor 100.0 4.1E-32 8.8E-37 335.1 22.2 193 444-650 1-222 (638)
348 COG4604 CeuD ABC-type enteroch 100.0 2.7E-33 5.9E-38 284.9 9.4 198 444-650 1-212 (252)
349 COG4136 ABC-type uncharacteriz 100.0 1.6E-32 3.6E-37 267.8 14.5 195 444-648 2-208 (213)
350 COG1119 ModF ABC-type molybden 100.0 1.3E-32 2.9E-37 290.7 14.7 200 442-650 29-249 (257)
351 PRK10636 putative ABC transpor 100.0 6.2E-32 1.3E-36 333.5 23.0 189 442-650 310-503 (638)
352 PLN03073 ABC transporter F fam 100.0 5.2E-32 1.1E-36 335.7 22.2 192 443-650 507-700 (718)
353 COG0488 Uup ATPase components 100.0 1.8E-32 3.9E-37 326.6 15.6 255 444-714 3-289 (530)
354 cd03222 ABC_RNaseL_inhibitor T 100.0 1.1E-31 2.4E-36 279.7 17.6 142 448-652 4-150 (177)
355 PF06472 ABC_membrane_2: ABC t 100.0 2.4E-29 5.2E-34 281.3 35.9 275 85-359 7-281 (281)
356 PRK15177 Vi polysaccharide exp 100.0 1.4E-31 3E-36 287.8 17.1 172 460-650 2-179 (213)
357 PRK11147 ABC transporter ATPas 100.0 5.6E-31 1.2E-35 325.4 22.1 191 444-650 3-229 (635)
358 cd03238 ABC_UvrA The excision 100.0 4.9E-31 1.1E-35 274.6 17.7 150 458-650 8-164 (176)
359 COG4178 ABC-type uncharacteriz 100.0 1.8E-30 4E-35 307.5 24.8 321 746-1077 30-370 (604)
360 TIGR00955 3a01204 The Eye Pigm 100.0 1.5E-31 3.2E-36 329.4 15.8 192 457-650 37-243 (617)
361 PRK12369 putative transporter; 100.0 9.9E-30 2.2E-34 287.8 28.2 283 765-1074 23-323 (326)
362 COG4170 SapD ABC-type antimicr 100.0 1.5E-31 3.2E-36 273.4 11.0 275 445-768 4-325 (330)
363 PRK13409 putative ATPase RIL; 100.0 6.1E-31 1.3E-35 320.7 17.3 184 449-650 78-287 (590)
364 PLN03140 ABC transporter G fam 100.0 1.6E-30 3.5E-35 342.0 22.0 208 444-654 867-1100(1470)
365 cd00267 ABC_ATPase ABC (ATP-bi 100.0 3.8E-30 8.3E-35 263.2 17.8 144 447-649 2-155 (157)
366 COG0396 sufC Cysteine desulfur 100.0 1.9E-29 4.1E-34 263.8 18.9 200 444-650 3-221 (251)
367 PLN03073 ABC transporter F fam 100.0 1E-29 2.2E-34 315.3 15.6 198 443-650 176-417 (718)
368 COG1101 PhnK ABC-type uncharac 100.0 3.4E-29 7.4E-34 258.5 12.6 186 457-650 18-225 (263)
369 PRK11098 microcin B17 transpor 100.0 2.3E-27 4.9E-32 273.2 28.5 283 767-1078 100-401 (409)
370 COG0488 Uup ATPase components 100.0 5.9E-28 1.3E-32 288.1 24.2 190 442-649 319-511 (530)
371 COG4133 CcmA ABC-type transpor 100.0 4.2E-29 9.1E-34 253.8 11.7 183 445-639 3-194 (209)
372 COG4674 Uncharacterized ABC-ty 100.0 6.6E-29 1.4E-33 252.6 12.9 199 443-650 4-222 (249)
373 COG4778 PhnL ABC-type phosphon 100.0 2.3E-29 5E-34 250.5 9.2 199 444-649 4-227 (235)
374 TIGR00956 3a01205 Pleiotropic 100.0 1.2E-28 2.6E-33 325.4 17.0 190 458-650 74-287 (1394)
375 COG1134 TagH ABC-type polysacc 100.0 4.3E-28 9.3E-33 257.0 14.5 178 458-650 40-223 (249)
376 COG4586 ABC-type uncharacteriz 100.0 1.2E-28 2.5E-33 262.4 9.9 178 459-650 38-233 (325)
377 KOG0061 Transporter, ABC super 100.0 5.2E-28 1.1E-32 295.7 17.0 205 443-650 24-247 (613)
378 cd03270 ABC_UvrA_I The excisio 100.0 8.1E-28 1.8E-32 260.9 16.4 178 457-650 7-214 (226)
379 PLN03140 ABC transporter G fam 99.9 6E-28 1.3E-32 317.8 15.7 190 458-650 178-414 (1470)
380 PF00005 ABC_tran: ABC transpo 99.9 3.5E-28 7.6E-33 242.3 9.6 130 461-607 1-137 (137)
381 cd03278 ABC_SMC_barmotin Barmo 99.9 2.5E-27 5.4E-32 251.7 13.7 160 462-650 14-191 (197)
382 cd03271 ABC_UvrA_II The excisi 99.9 4.6E-25 1E-29 243.0 15.7 174 459-649 9-246 (261)
383 PRK12369 putative transporter; 99.9 5.4E-22 1.2E-26 225.0 39.3 298 93-419 4-321 (326)
384 cd03279 ABC_sbcCD SbcCD and ot 99.9 6.4E-25 1.4E-29 236.1 14.8 184 444-652 5-211 (213)
385 KOG0059 Lipid exporter ABCA1 a 99.9 3.3E-25 7.2E-30 281.9 13.8 201 443-651 563-775 (885)
386 cd03273 ABC_SMC2_euk Eukaryoti 99.9 6E-25 1.3E-29 242.2 13.9 170 471-648 25-242 (251)
387 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1E-24 2.2E-29 238.7 15.6 198 445-649 4-235 (243)
388 KOG0927 Predicted transporter 99.9 9.1E-25 2E-29 250.4 10.6 193 442-651 387-583 (614)
389 cd03240 ABC_Rad50 The catalyti 99.9 1E-23 2.2E-28 225.4 14.1 160 464-651 16-199 (204)
390 PRK11098 microcin B17 transpor 99.9 1.3E-20 2.8E-25 217.5 40.0 284 108-421 95-397 (409)
391 KOG0062 ATPase component of AB 99.9 4.9E-24 1.1E-28 243.3 10.1 191 442-649 78-270 (582)
392 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.2E-24 4.8E-29 231.7 6.3 181 444-649 5-204 (212)
393 KOG0065 Pleiotropic drug resis 99.9 7.4E-24 1.6E-28 263.8 9.7 195 457-655 803-1012(1391)
394 COG4138 BtuD ABC-type cobalami 99.9 8.8E-24 1.9E-28 211.6 4.8 188 444-650 3-208 (248)
395 COG1129 MglA ABC-type sugar tr 99.9 1.6E-22 3.6E-27 236.1 15.9 197 442-650 261-477 (500)
396 KOG0066 eIF2-interacting prote 99.9 1.5E-22 3.2E-27 224.9 13.4 189 442-649 584-776 (807)
397 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.3E-22 2.9E-27 223.1 12.5 176 472-651 23-235 (247)
398 KOG0927 Predicted transporter 99.9 3.7E-22 8E-27 229.2 14.7 218 442-672 73-316 (614)
399 PRK00349 uvrA excinuclease ABC 99.9 1.7E-21 3.7E-26 245.7 16.7 73 577-649 829-907 (943)
400 PRK00635 excinuclease ABC subu 99.9 2.3E-21 5E-26 253.4 17.5 190 444-648 600-885 (1809)
401 COG1245 Predicted ATPase, RNas 99.9 5.7E-21 1.2E-25 215.1 15.3 172 460-651 351-533 (591)
402 KOG0062 ATPase component of AB 99.8 5.5E-21 1.2E-25 218.6 13.4 194 442-651 360-556 (582)
403 cd03276 ABC_SMC6_euk Eukaryoti 99.8 1.6E-20 3.4E-25 199.9 13.8 162 461-649 12-190 (198)
404 COG3845 ABC-type uncharacteriz 99.8 1.6E-19 3.5E-24 207.1 16.1 202 442-650 255-479 (501)
405 TIGR00630 uvra excinuclease AB 99.8 1.3E-19 2.8E-24 228.5 16.6 72 577-648 827-904 (924)
406 KOG2355 Predicted ABC-type tra 99.8 8.4E-18 1.8E-22 172.8 14.8 198 442-650 11-224 (291)
407 COG2401 ABC-type ATPase fused 99.7 1.1E-17 2.3E-22 186.7 14.4 172 459-650 397-585 (593)
408 cd03280 ABC_MutS2 MutS2 homolo 99.7 3.6E-18 7.7E-23 182.1 9.8 137 460-649 16-165 (200)
409 cd03239 ABC_SMC_head The struc 99.7 1.7E-17 3.7E-22 173.7 14.7 72 579-650 95-173 (178)
410 COG1245 Predicted ATPase, RNas 99.7 5.1E-18 1.1E-22 191.5 10.8 166 468-650 97-289 (591)
411 cd03241 ABC_RecN RecN ATPase i 99.7 1.8E-17 3.9E-22 185.4 13.5 87 564-650 156-248 (276)
412 cd03227 ABC_Class2 ABC-type Cl 99.7 7.3E-17 1.6E-21 166.4 10.5 135 463-649 13-155 (162)
413 cd03277 ABC_SMC5_euk Eukaryoti 99.7 1.8E-16 3.9E-21 170.7 13.7 174 461-650 14-210 (213)
414 cd03285 ABC_MSH2_euk MutS2 hom 99.6 1.4E-16 3.1E-21 172.5 6.2 144 457-649 16-167 (222)
415 PRK00635 excinuclease ABC subu 99.6 8.5E-16 1.8E-20 201.9 14.2 75 577-651 1698-1778(1809)
416 KOG0066 eIF2-interacting prote 99.6 2E-16 4.4E-21 176.5 7.1 185 444-650 264-485 (807)
417 COG0178 UvrA Excinuclease ATPa 99.6 1.8E-15 3.9E-20 181.3 14.6 75 577-651 821-901 (935)
418 PF00664 ABC_membrane: ABC tra 99.6 1.6E-12 3.4E-17 140.8 35.3 216 110-327 4-220 (275)
419 KOG0065 Pleiotropic drug resis 99.6 1.6E-15 3.5E-20 190.2 10.9 190 458-650 128-338 (1391)
420 cd03283 ABC_MutS-like MutS-lik 99.6 1.5E-15 3.3E-20 161.8 7.9 136 458-641 14-154 (199)
421 cd03243 ABC_MutS_homologs The 99.6 3E-15 6.6E-20 159.8 7.0 140 463-649 21-165 (202)
422 cd03242 ABC_RecF RecF is a rec 99.5 3E-14 6.5E-19 159.0 12.8 74 577-650 182-267 (270)
423 cd03282 ABC_MSH4_euk MutS4 hom 99.5 4.5E-14 9.7E-19 151.1 9.9 138 457-641 15-157 (204)
424 KOG0063 RNAse L inhibitor, ABC 99.5 1.2E-13 2.7E-18 155.1 12.4 181 452-652 343-535 (592)
425 cd01128 rho_factor Transcripti 99.4 2.2E-13 4.8E-18 149.6 8.7 173 466-650 11-209 (249)
426 TIGR00630 uvra excinuclease AB 99.4 4.5E-13 9.7E-18 169.8 11.2 87 554-648 470-562 (924)
427 cd03284 ABC_MutS1 MutS1 homolo 99.4 5E-13 1.1E-17 144.4 10.0 136 458-647 18-165 (216)
428 PRK00349 uvrA excinuclease ABC 99.4 4.7E-13 1E-17 169.9 10.3 87 554-648 472-564 (943)
429 cd00820 PEPCK_HprK Phosphoenol 99.4 4.7E-13 1E-17 127.7 6.5 72 458-537 2-79 (107)
430 TIGR02858 spore_III_AA stage I 99.4 2.2E-12 4.7E-17 143.4 11.2 126 472-650 112-258 (270)
431 PF02463 SMC_N: RecF/RecN/SMC 99.3 3.8E-12 8.1E-17 137.5 11.7 172 462-648 16-212 (220)
432 TIGR01069 mutS2 MutS2 family p 99.3 6.3E-12 1.4E-16 157.8 15.3 145 444-640 295-450 (771)
433 smart00534 MUTSac ATPase domai 99.3 1.1E-12 2.5E-17 138.2 4.7 64 577-643 60-130 (185)
434 PF05992 SbmA_BacA: SbmA/BacA- 99.3 8E-09 1.7E-13 114.6 33.7 280 108-417 13-311 (315)
435 PRK00064 recF recombination pr 99.3 4E-11 8.7E-16 139.3 15.8 74 577-650 272-357 (361)
436 cd03281 ABC_MSH5_euk MutS5 hom 99.3 2.4E-11 5.1E-16 131.1 11.4 132 460-641 18-160 (213)
437 KOG0063 RNAse L inhibitor, ABC 99.2 8.6E-12 1.9E-16 140.5 6.0 165 469-650 98-289 (592)
438 TIGR00606 rad50 rad50. This fa 99.2 4.9E-11 1.1E-15 159.1 13.4 116 524-648 1153-1289(1311)
439 cd03287 ABC_MSH3_euk MutS3 hom 99.1 1.6E-10 3.4E-15 125.3 10.0 137 458-641 18-160 (222)
440 PHA02562 46 endonuclease subun 99.1 1.2E-10 2.5E-15 143.3 9.1 76 577-652 467-554 (562)
441 PTZ00132 GTP-binding nuclear p 99.1 4.9E-11 1.1E-15 128.4 4.9 42 583-624 157-203 (215)
442 TIGR00634 recN DNA repair prot 99.1 2.7E-10 6E-15 139.8 10.0 73 578-650 440-518 (563)
443 PRK00409 recombination and DNA 99.0 1.5E-09 3.2E-14 137.1 14.8 63 577-640 389-455 (782)
444 PRK10869 recombination and rep 99.0 6.1E-10 1.3E-14 135.9 10.1 73 578-650 430-508 (553)
445 PRK08533 flagellar accessory p 99.0 3.8E-09 8.3E-14 115.4 13.1 155 445-648 8-184 (230)
446 PRK13695 putative NTPase; Prov 99.0 2.7E-10 5.8E-15 118.9 3.4 73 577-650 77-151 (174)
447 PRK01156 chromosome segregatio 98.9 3.3E-09 7.2E-14 137.4 10.3 77 576-652 799-887 (895)
448 PRK07721 fliI flagellum-specif 98.9 7.4E-09 1.6E-13 122.4 11.7 148 456-649 144-329 (438)
449 TIGR00618 sbcc exonuclease Sbc 98.9 3.8E-09 8.3E-14 138.5 9.9 75 577-651 949-1037(1042)
450 PRK03918 chromosome segregatio 98.9 4.7E-09 1E-13 135.8 10.1 74 577-650 787-869 (880)
451 cd01124 KaiC KaiC is a circadi 98.8 1.1E-08 2.4E-13 107.3 9.0 73 577-649 70-164 (187)
452 PRK06793 fliI flagellum-specif 98.8 2.1E-08 4.6E-13 117.7 12.0 155 444-643 130-294 (432)
453 cd03286 ABC_MSH6_euk MutS6 hom 98.8 4.6E-08 1E-12 105.9 13.3 137 457-640 16-158 (218)
454 TIGR03238 dnd_assoc_3 dnd syst 98.7 3.3E-09 7.1E-14 124.1 2.2 48 459-508 20-68 (504)
455 TIGR02168 SMC_prok_B chromosom 98.7 1.9E-08 4E-13 133.8 8.4 73 576-648 1087-1165(1179)
456 TIGR02788 VirB11 P-type DNA tr 98.7 3.8E-08 8.3E-13 112.2 9.8 127 464-648 137-266 (308)
457 COG3910 Predicted ATPase [Gene 98.7 9.1E-08 2E-12 98.6 10.4 73 578-651 129-205 (233)
458 PRK10246 exonuclease subunit S 98.6 4.8E-08 1E-12 127.8 9.4 73 577-649 948-1032(1047)
459 COG1133 SbmA ABC-type long-cha 98.6 0.00018 3.8E-09 78.8 34.2 297 91-417 73-389 (405)
460 cd01131 PilT Pilus retraction 98.6 1.1E-07 2.3E-12 101.7 9.8 57 588-648 66-122 (198)
461 cd01120 RecA-like_NTPases RecA 98.6 2.4E-07 5.3E-12 93.7 11.5 126 473-637 1-139 (165)
462 TIGR02169 SMC_prok_A chromosom 98.6 6.5E-08 1.4E-12 128.7 9.1 74 576-649 1072-1151(1164)
463 TIGR00958 3a01208 Conjugate Tr 98.6 3.4E-06 7.3E-11 106.9 24.0 295 760-1073 162-461 (711)
464 COG0178 UvrA Excinuclease ATPa 98.6 1.8E-07 3.8E-12 113.8 10.9 75 576-650 479-558 (935)
465 PF05992 SbmA_BacA: SbmA/BacA- 98.5 9E-06 1.9E-10 90.7 21.6 245 793-1073 51-314 (315)
466 PRK02224 chromosome segregatio 98.5 1.5E-07 3.1E-12 122.1 8.6 74 577-650 780-869 (880)
467 PRK06995 flhF flagellar biosyn 98.5 9.4E-08 2E-12 113.8 5.6 149 461-633 246-400 (484)
468 PRK06002 fliI flagellum-specif 98.5 2.6E-07 5.6E-12 108.8 9.1 81 442-523 137-230 (450)
469 PRK13830 conjugal transfer pro 98.5 4.3E-07 9.4E-12 116.0 11.5 58 593-650 649-720 (818)
470 TIGR00767 rho transcription te 98.5 2.5E-07 5.3E-12 107.1 7.8 80 407-497 104-194 (415)
471 PRK06067 flagellar accessory p 98.5 2.4E-06 5.3E-11 93.5 15.0 149 467-649 21-187 (234)
472 cd02023 UMPK Uridine monophosp 98.5 1.5E-07 3.4E-12 100.1 5.3 113 473-611 1-113 (198)
473 cd01130 VirB11-like_ATPase Typ 98.4 3.8E-07 8.3E-12 96.4 6.5 77 460-536 14-96 (186)
474 cd01125 repA Hexameric Replica 98.4 5.3E-07 1.1E-11 99.1 6.7 44 592-636 107-160 (239)
475 TIGR00611 recf recF protein. A 98.3 6.7E-07 1.5E-11 104.2 6.7 62 578-639 275-345 (365)
476 smart00382 AAA ATPases associa 98.3 9.1E-06 2E-10 78.9 13.3 115 470-634 1-125 (148)
477 PRK05399 DNA mismatch repair p 98.3 1.3E-05 2.9E-10 102.8 17.4 135 458-642 595-737 (854)
478 TIGR01420 pilT_fam pilus retra 98.2 3.6E-06 7.7E-11 97.5 9.7 123 468-647 119-242 (343)
479 TIGR02204 MsbA_rel ABC transpo 98.2 0.00014 3.1E-09 90.0 23.4 293 764-1072 23-317 (576)
480 PRK00300 gmk guanylate kinase; 98.2 1.8E-06 3.9E-11 92.2 5.3 28 469-496 3-30 (205)
481 TIGR02655 circ_KaiC circadian 98.1 1.7E-07 3.7E-12 113.3 -3.5 152 467-648 17-190 (484)
482 TIGR02203 MsbA_lipidA lipid A 98.1 0.00013 2.9E-09 90.2 21.7 290 764-1072 19-313 (571)
483 TIGR02680 conserved hypothetic 98.1 2.9E-06 6.2E-11 113.7 7.3 60 576-635 1245-1316(1353)
484 TIGR02857 CydD thiol reductant 98.1 0.00041 8.8E-09 85.1 24.2 287 769-1071 13-302 (529)
485 PRK06315 type III secretion sy 98.1 3.5E-06 7.5E-11 99.6 5.6 103 457-561 151-277 (442)
486 PRK07196 fliI flagellum-specif 98.1 4.1E-06 8.9E-11 98.8 6.0 78 456-534 141-234 (434)
487 PRK13657 cyclic beta-1,2-gluca 98.1 0.00029 6.3E-09 87.6 22.3 288 765-1070 25-313 (588)
488 COG0419 SbcC ATPase involved i 98.0 9.7E-06 2.1E-10 105.4 9.4 76 576-651 813-899 (908)
489 PRK13891 conjugal transfer pro 98.0 4.4E-05 9.6E-10 98.3 14.9 52 589-640 680-735 (852)
490 PRK14079 recF recombination pr 98.0 1.1E-05 2.4E-10 93.6 8.0 69 578-649 263-340 (349)
491 PRK01889 GTPase RsgA; Reviewed 98.0 4.3E-06 9.2E-11 97.3 4.5 77 460-536 184-263 (356)
492 PRK11176 lipid transporter ATP 98.0 0.00078 1.7E-08 83.7 24.1 290 766-1071 32-323 (582)
493 TIGR02524 dot_icm_DotB Dot/Icm 98.0 1E-05 2.2E-10 94.0 6.9 67 469-535 132-211 (358)
494 PF09818 ABC_ATPase: Predicted 98.0 7.3E-05 1.6E-09 87.1 13.3 164 450-649 227-413 (448)
495 PRK08149 ATP synthase SpaL; Va 97.9 2E-05 4.3E-10 92.9 7.9 66 456-522 137-215 (428)
496 TIGR01026 fliI_yscN ATPase Fli 97.9 3.4E-05 7.3E-10 91.8 9.6 53 454-507 147-199 (440)
497 TIGR01192 chvA glucan exporter 97.8 0.0016 3.5E-08 81.0 23.4 288 763-1072 23-315 (585)
498 PRK07594 type III secretion sy 97.8 1.9E-05 4E-10 93.3 5.8 64 443-507 128-191 (433)
499 PLN03210 Resistant to P. syrin 97.8 6.4E-05 1.4E-09 100.3 11.3 43 464-506 200-243 (1153)
500 TIGR02903 spore_lon_C ATP-depe 97.8 4.3E-05 9.3E-10 95.0 8.8 117 471-633 175-299 (615)
No 1
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=100.00 E-value=7e-93 Score=797.84 Aligned_cols=352 Identities=24% Similarity=0.404 Sum_probs=323.1
Q ss_pred CCCCCCCCCchhhhhcccccCCCceeecCCCeeEehhhHHHHhhHHHHHHHhcCCcchhHHhhcCHHHHHHHHHHHHhhh
Q 001329 729 PQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQS 808 (1099)
Q Consensus 729 ~~~~~~~~~~p~Ra~~lCri~iP~l~s~e~g~lv~c~~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~ 808 (1099)
.-++.-+..+..|+..+.|+.+|...|+|.|.+..|+++|++|||||+|||.|||++|++||++|.+.|.+.|++|+++|
T Consensus 88 ~~e~~~N~~f~k~l~~L~Kilip~vfc~e~gll~~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~lia 167 (728)
T KOG0064|consen 88 ELEPAKNSQFLKRLNVLSKILIPTVFCKETGLLTAQSFFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFLIA 167 (728)
T ss_pred ccccccCHHHHHHHHHHHHHhcchHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 33444556677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHH
Q 001329 809 AASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVD 888 (1099)
Q Consensus 809 ~~~s~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~~~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lD 888 (1099)
+|||||||+|||++++|+|.||+|||+|+|++||+|+|||+|+|+|+|++||||+||+||.+||+|+||||||++||+||
T Consensus 168 iPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lD 247 (728)
T KOG0064|consen 168 IPASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLD 247 (728)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhC---cchHHHHHHHHHHHHHHHhhcCCcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHH
Q 001329 889 ILWFTWRMKALTG---QRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKA 965 (1099)
Q Consensus 889 i~~~~~~l~~~~g---~~g~~~~~~~~~~~~~~lr~~~P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~ 965 (1099)
++++++.|-++.+ ..|..+.+..+.+++.+||+++|+||+|+++|++++|+|||+|||+|+|+||||||+||++|..
T Consensus 248 l~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ 327 (728)
T KOG0064|consen 248 LILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELT 327 (728)
T ss_pred HHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHH
Confidence 9999999988754 4555568899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccchhhhhhhhhheecccCccccc----chhhhHHHHHHHHHHhhhh
Q 001329 966 MIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALV----STQGELAHALRFLASVVSQ 1041 (1099)
Q Consensus 966 ~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 1041 (1099)
.++++|++|+.+|+.++++|+||.|+|||++||.|++.|++++++|++......+.. .....+++.+.+.++++.+
T Consensus 328 ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~s 407 (728)
T KOG0064|consen 328 QVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLS 407 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988733221111 1111245555555555555
Q ss_pred hhhhHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhCCCC
Q 001329 1042 SFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGT 1080 (1099)
Q Consensus 1042 ~~~a~grl~~~~k~~~~laG~t~Rv~el~~~l~~~~~g~ 1080 (1099)
+|||+||+|+|||||+||||||.||.+|++||+|+++|.
T Consensus 408 aAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~ 446 (728)
T KOG0064|consen 408 AADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGN 446 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999985
No 2
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-76 Score=696.88 Aligned_cols=530 Identities=22% Similarity=0.267 Sum_probs=429.7
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCh-hHHHHHHHHHHHHHHHHHHHHH
Q 001329 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL-RRV-PLFFQLISENILLCFLLSTMHS 162 (1099)
Q Consensus 85 ~~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~-~~~-~~~~~~l~~~~~l~~~~~~~~~ 162 (1099)
...++||+.+++|+|+. +.+.+.++++....+..+|.+.|.++|.+.. .+. ..+-+......++.+..++++.
T Consensus 132 ~~~~~rl~~l~~~~~~~-----l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~ 206 (716)
T KOG0058|consen 132 HTLLKRLLGLLKPEWKW-----LVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANA 206 (716)
T ss_pred hhHHHHHHHHhchhHHH-----HHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44789999999999984 6666677777777888999999999998876 221 1222222222222233334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWR 241 (1099)
Q Consensus 163 ~~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~-~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~ 241 (1099)
+..++..+.+.+ +..++|...|+++++++++|||. +++++.+|+++|...+.+.+...+...+.+++.++. ...
T Consensus 207 ~r~~~~~~a~~r----v~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g-~~~ 281 (716)
T KOG0058|consen 207 IRGGLLQYAGER----VVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFG-GLG 281 (716)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHH
Confidence 555555555555 78889999999999999999986 578999999999999988888888888877765533 446
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 001329 242 LCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALT 321 (1099)
Q Consensus 242 L~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~ 321 (1099)
+|+++||.|+++.++.+|+++++...+++.++++.++.|+..++.++..+|...++++|++|++|+.|.+++.++.++..
T Consensus 282 ~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~ 361 (716)
T KOG0058|consen 282 FMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVL 361 (716)
T ss_pred HHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999877777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 322 RHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKP-DTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISS 400 (1099)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~-~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~ 400 (1099)
+..++. ....+.++.............++ ++||++.. +.+|.| .+.+++.|... +-.++..++..+
T Consensus 362 ~i~~k~---a~a~~~f~~~~~~~~~~~~~siL----~~Gg~Lv~~g~mt~g--~L~sFllY~~~----~g~sl~~ls~~y 428 (716)
T KOG0058|consen 362 KLSKKE---AVAYGIFFGSTNLLGNLAVLSIL----FYGGHLVLTGSLTSG--ALSSFLLYQVQ----LGSSLSGLSSFY 428 (716)
T ss_pred HHHHHH---HHHhhHhHhHHHHHHhHHHHHHH----HhccchhhcCccchh--HHHHHHHHHHH----HHHHHHHHHHHH
Confidence 543322 22233333322222233333333 35666643 445555 66777766544 346777888899
Q ss_pred HHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEEc
Q 001329 401 RRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITG 478 (1099)
Q Consensus 401 ~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~--~~vL~~vsl~i~~Ge~vaIvG 478 (1099)
..+.+..++.+|++|++|.+|..+..+... + ....+.|+|+||+|.||.. .++|+|+||+|+|||++||||
T Consensus 429 s~lmkgvGAs~rvFel~dr~P~i~~~G~~~------p-~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVG 501 (716)
T KOG0058|consen 429 SELMKGVGASERVFELMDRKPRIPLTGTLA------P-DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVG 501 (716)
T ss_pred HHHHHhcchHHHHHHHhccCCCCCCCCccc------c-ccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEEC
Confidence 999999999999999999887665321110 1 1235789999999999964 579999999999999999999
Q ss_pred CCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHH
Q 001329 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1099)
Q Consensus 479 ~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~ 552 (1099)
|||+||||+.++|.++|+|++|+|.+||+| ..+|++||+|.|||.+|.+||+|||.||... .+++++.
T Consensus 502 PSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~------~t~e~i~ 575 (716)
T KOG0058|consen 502 PSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDN------ATDEEIE 575 (716)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCC------CCHHHHH
Confidence 999999999999999999999999999987 3578999999999999999999999999763 6899999
Q ss_pred HHHHhcCChhHHhcCCCCcccC---CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcE
Q 001329 553 ELLKNVDLEYLLDRYPPEKEIN---WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTS 627 (1099)
Q Consensus 553 ~~l~~~~l~~~~~~~p~~~~~~---~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~T 627 (1099)
++++.++.++|+.++|+++++. .|.+|||||||||||||||++||.||||||+|||||.++|..+++++.+ .++|
T Consensus 576 ~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rT 655 (716)
T KOG0058|consen 576 AAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRT 655 (716)
T ss_pred HHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCe
Confidence 9999999999999999987764 6889999999999999999999999999999999999999999999975 4899
Q ss_pred EEEEccChhHHHhcCEEEEEeCC
Q 001329 628 CITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 628 vI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+|+|+||+++++.+|+|++++++
T Consensus 656 VlvIAHRLSTV~~Ad~Ivvi~~G 678 (716)
T KOG0058|consen 656 VLVIAHRLSTVRHADQIVVIDKG 678 (716)
T ss_pred EEEEehhhhHhhhccEEEEEcCC
Confidence 99999999999999999999875
No 3
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=6.7e-77 Score=679.53 Aligned_cols=630 Identities=38% Similarity=0.610 Sum_probs=542.7
Q ss_pred HHhhhhhhhcccchhhhhhccccCCCCcccccCCCCCCCcc-cccccccccchhcccccccchHHHHHHHHHHhhchh-h
Q 001329 24 ILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGDSERK-PDKAVANRSNIKKANQKKGGLKSLQVLAAILLSEMG-K 101 (1099)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~~~~p~~~-~ 101 (1099)
+++++++..+|++++|+..+..+..+++|. ++...+.++ ..-.....+.++|-+.++..+..+.++++++.|... +
T Consensus 2 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~t~~~~~~~~~~~~~k~~~~~~f~~k~~~ilkil~p~~~~~ 79 (659)
T KOG0060|consen 2 LAITAKVCAPGLVLRHASFLLAKLYIGSFR--GNPRFRSETCMSLAGKKQGAKAKASLDKVFFQKFLQILKILFPSTFSS 79 (659)
T ss_pred CcccccccCchhHHHHHHHHHHHhhhhhcc--CCCcccccchhhccCCCCCccchhhhhHHHHHHHHHHHHHhccCcccc
Confidence 467889999999999999999999999995 444444443 333344444446667777778889999999999765 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 102 MGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTK 181 (1099)
Q Consensus 102 ~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~ 181 (1099)
...+++++++++.+..+..++.+..+.+.++.++++++.+.|.+.+..+++++.+.+.++++.+|....+..+||+++++
T Consensus 80 ~~~~l~l~~~~l~~~~~~~~y~~~~~~~~~y~al~~kd~~~F~~~~~~~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk 159 (659)
T KOG0060|consen 80 QTALLLLALVALTLLTTADVYMIGNIPTKFYVALINKDAELFKRLLFKYVLLIPGISLLNALLKFTTNELYLRFRKNLTK 159 (659)
T ss_pred HHHHHHHHHHHHHHHHHhHhheecccchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence 45555667777777777888888888999999999999999999988888888888888999999999999999999999
Q ss_pred HHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001329 182 LIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGA 261 (1099)
Q Consensus 182 ~l~~~~f~~l~~~~~~~~~~~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~~l~l~il~~~~~~ 261 (1099)
.+++.||++..||.++..+.+++|||||+++|++++|..+.+++.+++.++++++.|+|.++-...|....+++.|+.+.
T Consensus 160 ~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~ 239 (659)
T KOG0060|consen 160 YLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIG 239 (659)
T ss_pred HHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999998888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 262 GTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFL 341 (1099)
Q Consensus 262 ~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 341 (1099)
+++.+.+.+++.++..++|+.||+||+.+.+++.|+|.|++|+++..|....+++|+++.++.+..+...++.+++++++
T Consensus 240 ~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~ 319 (659)
T KOG0060|consen 240 TVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIF 319 (659)
T ss_pred HHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 001329 342 LKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISR 421 (1099)
Q Consensus 342 ~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~~~~Ri~ell~~~~ 421 (1099)
. |++.+++++++..|+|.++. .+..+ .+++...+.+...++..++++++.+....+++.++.++.+||.|+++...
T Consensus 320 ~-Ylg~ilsy~vi~~p~Fs~h~-y~~~s--~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~ 395 (659)
T KOG0060|consen 320 D-YLGGILSYVVIAIPFFSGHV-YDDLS--PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLD 395 (659)
T ss_pred H-HHHhhheeeEEeeeeecccc-cCCcC--HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Confidence 6 88888888888899998763 22222 45666777777788889999999999999999999999999999886544
Q ss_pred hcccC---------------CCCCCCCCCCCCcCCCCcEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCCCchh
Q 001329 422 ELSIE---------------DKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKS 485 (1099)
Q Consensus 422 e~~~~---------------~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sGsGKS 485 (1099)
+.... .....+++.....+.++.|++++|++..|+ +..+++|+||+|+.|+.+.|+||||||||
T Consensus 396 d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKt 475 (659)
T KOG0060|consen 396 DLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKT 475 (659)
T ss_pred HhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchh
Confidence 33210 000111222233345678999999999998 66788999999999999999999999999
Q ss_pred HHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCC-cCCcCCHHHHHHHHHhcCChhHH
Q 001329 486 SLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLL 564 (1099)
Q Consensus 486 TLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~-~~~~~~~~~i~~~l~~~~l~~~~ 564 (1099)
+|+|+++|+||..+|++....... -+.+.|+||.||+..||+||++.||..... ..+..+++++.+.|+.+++.+.+
T Consensus 476 SLlRvlggLWp~~~G~l~k~~~~~--~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~ 553 (659)
T KOG0060|consen 476 SLLRVLGGLWPSTGGKLTKPTDGG--PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLL 553 (659)
T ss_pred HHHHHHhcccccCCCeEEecccCC--CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHH
Confidence 999999999999999998876321 146999999999999999999999965432 23347899999999999999999
Q ss_pred hcCCC-C--cccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhc
Q 001329 565 DRYPP-E--KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFH 641 (1099)
Q Consensus 565 ~~~p~-~--~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~ 641 (1099)
++... + .+.+|.+.||+|||||+++||.++++|++.||||+|||+|.+.|..+++.+++.|+|.|.|+||.++.++|
T Consensus 554 ~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfH 633 (659)
T KOG0060|consen 554 EREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFH 633 (659)
T ss_pred HHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhh
Confidence 88642 3 33479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCceEEeecCCC
Q 001329 642 DVVLSLDGEGEWRVHDKRDG 661 (1099)
Q Consensus 642 D~Il~l~~~g~~~~~~~~~~ 661 (1099)
|.++-|+++|+|.+++.+++
T Consensus 634 d~~L~~~g~g~w~~~~I~~q 653 (659)
T KOG0060|consen 634 DYVLRMDGRGSWRFHQIDDQ 653 (659)
T ss_pred hEEEEecCCCceEEEEechh
Confidence 99999999999999875543
No 4
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.5e-69 Score=669.01 Aligned_cols=562 Identities=34% Similarity=0.608 Sum_probs=454.2
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS 164 (1099)
Q Consensus 85 ~~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 164 (1099)
++.+++++++++||+.+..++.+++.++++++.+++++.+|.+.+.++|.++.++...|...++.+.+++++..+++++.
T Consensus 76 ~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~ 155 (659)
T TIGR00954 76 LGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAI 155 (659)
T ss_pred HHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999998777778888889999999999999999999999987765556655555555556666778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1099)
Q Consensus 165 ~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~ 244 (1099)
+|+..++..+||.+++++++++||++..+|++.++|++.+|++||+++|++.+++.+...+..++..+++.+.+.+.++.
T Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 156 KYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999998888877766666655
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001329 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1099)
Q Consensus 245 ~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1099)
.++|.+++++++++|+..++.+++++++.+...+.++.+++++..+.+..+++|+||+|++|+.|.+++++.++++.+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc-ccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGN-LKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1099)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~-l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l 403 (1099)
.+..+.......+..++..+....++++++..+++... ...+..|.|. +++.+......+..++.|+..+......+
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~--~~~~f~~~~~~~~~l~~~~~~l~~~~~~i 393 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEE--LMQEFYNNGRLLLKAADALGRLMLAGRDM 393 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555444444444444322222222222222222111 1113345553 22322222234556678999999999999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCC--C-CCCC-CC-------------CCCCcCCCCcEEEEeeEEEcCCCCceeeeeeE
Q 001329 404 NRLSGYADRIHELMVISRELSIED--K-SPQR-NG-------------SRNYFSEANYIEFSGVKVVTPTGNVLVENLTL 466 (1099)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~e~~~~~--~-~~~~-~~-------------~~~~~~~~~~I~~~~v~~~y~~~~~vL~~vsl 466 (1099)
+++.++++|++++++.+++...+. . .... .. ........+.|+++||++.|++++++++|+||
T Consensus 394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl 473 (659)
T TIGR00954 394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecceE
Confidence 999999999999998765532110 0 0000 00 00011123569999999999766789999999
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCc-CCc
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEP 545 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~ 545 (1099)
+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ +++++||||+|+++++|++||+.++...... ...
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 548 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRG 548 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccC
Confidence 9999999999999999999999999999999999999876 5689999999999999999999987532111 112
Q ss_pred CCHHHHHHHHHhcCChhHHhcCCC--CcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 001329 546 LTHGGMVELLKNVDLEYLLDRYPP--EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623 (1099)
Q Consensus 546 ~~~~~i~~~l~~~~l~~~~~~~p~--~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~ 623 (1099)
.+++++.++++.+++++++++ |. ++..+|+.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++
T Consensus 549 ~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 549 LSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred CCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 457788999999999999887 54 334467889999999999999999999999999999999999999999999998
Q ss_pred cCcEEEEEccChhHHHhcCEEEEEeCCCceE
Q 001329 624 MGTSCITISHRPALVAFHDVVLSLDGEGEWR 654 (1099)
Q Consensus 624 ~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~~ 654 (1099)
.|+|+|+||||+++++.||++++++++|+|.
T Consensus 628 ~~~tvI~isH~~~~~~~~d~il~l~~~g~~~ 658 (659)
T TIGR00954 628 FGITLFSVSHRKSLWKYHEYLLYMDGRGGYQ 658 (659)
T ss_pred cCCEEEEEeCchHHHHhCCEEEEEeCCCCcc
Confidence 8999999999999999999999999998885
No 5
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.7e-66 Score=633.44 Aligned_cols=529 Identities=19% Similarity=0.241 Sum_probs=413.7
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1099)
Q Consensus 87 ~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1099)
.+..+++.+++|++. +.-+++.+++...+++..|.....++|.+........ +....+.+++..++..+.++
T Consensus 141 ~~~~f~~~~~~~~~~-----l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~t---L~vl~ig~~~~~l~~~~l~~ 212 (709)
T COG2274 141 GLSWFIPLLFKYRRL-----LFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRST---LTVLAIGLLLAALFEALLRL 212 (709)
T ss_pred chHhHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhH---HHHHHHHHHHHHHHHHHHHH
Confidence 467788888888874 5555556666677778888888888887764432211 11111222223344556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1099)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~ 245 (1099)
++.++...+.+++...+..++|+|++++|++||+++ .++..+|+. |++++.+.+..-+...+..++..++| ..+|++
T Consensus 213 lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~-l~vm~~ 290 (709)
T COG2274 213 LRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIF-LAVMFL 290 (709)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 777777777777888899999999999999999865 567777765 77775554443332222222222222 345677
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 001329 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1099)
Q Consensus 246 ~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~ 325 (1099)
++|.++++.++.+|+..++...+.|.+++.+++..+..++....+.+...++++||..+.|.+...+|++++.+..+...
T Consensus 291 ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~ 370 (709)
T COG2274 291 YSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGF 370 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999888888889999999999888888888888899999999999999999999999999999887655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1099)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~ 404 (1099)
+..+.....+.+..++..+. ..++++ +|..+. .+..|+|. ++++ ......+.+|+..+...+.+++
T Consensus 371 ~~~~~~~~~~~~~~~l~~l~---~v~iL~----~G~~lVl~~~lTlG~--LiAf----~~l~~~f~~pi~~L~~~~~~~q 437 (709)
T COG2274 371 KTEKLALILNTIKSLLQQLS---SVLILW----FGAILVLEGELTLGQ--LVAF----NMLAGYFISPITRLSQLWTDFQ 437 (709)
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHhcCCcchHH--HHHH----HHHHHHHHhHHHHHHHHHHHHH
Confidence 54444444443333333222 222333 333332 34567774 3333 2234556688889999999999
Q ss_pred HHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCc
Q 001329 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSG 483 (1099)
Q Consensus 405 ~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsG 483 (1099)
++..+.+|+.++++.++|.+.+... ...+...+.|+++||+|+|+.+ +++|+|+||+|++||++||||+||||
T Consensus 438 ~~~~~~~rL~dil~~~~E~~~~~~~------~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsG 511 (709)
T COG2274 438 QAKVALERLGDILDTPPEQEGDKTL------IHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSG 511 (709)
T ss_pred HHHHHHHHHHHHhcCCccccccccc------ccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCC
Confidence 9999999999999988774421110 1112236789999999999765 56999999999999999999999999
Q ss_pred hhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHh
Q 001329 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1099)
Q Consensus 484 KSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~ 557 (1099)
||||+|+|+|+|+|++|+|.+||.| .++|++||||+||+.+|.|||+|||+++.+. .+++++.++++.
T Consensus 512 KSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~------~~~e~i~~A~~~ 585 (709)
T COG2274 512 KSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE------ATDEEIIEAAQL 585 (709)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCC------CCHHHHHHHHHH
Confidence 9999999999999999999999987 4689999999999999999999999998764 578999999999
Q ss_pred cCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEc
Q 001329 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITIS 632 (1099)
Q Consensus 558 ~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~It 632 (1099)
+|+++++.++|.++++ +.|.+||||||||++|||||+++|+||||||||||||+++|+.+++.+.+. |+|+|+||
T Consensus 586 ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~Ia 665 (709)
T COG2274 586 AGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIA 665 (709)
T ss_pred hCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEE
Confidence 9999999999998776 468899999999999999999999999999999999999999999999874 79999999
Q ss_pred cChhHHHhcCEEEEEeCC
Q 001329 633 HRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 633 H~l~~i~~~D~Il~l~~~ 650 (1099)
||+++++.||+|+||+++
T Consensus 666 HRl~ti~~adrIiVl~~G 683 (709)
T COG2274 666 HRLSTIRSADRIIVLDQG 683 (709)
T ss_pred ccchHhhhccEEEEccCC
Confidence 999999999999999864
No 6
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-66 Score=642.59 Aligned_cols=545 Identities=18% Similarity=0.191 Sum_probs=408.3
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSK 165 (1099)
Q Consensus 86 ~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1099)
.++++++++.+|+|.. +++.++.++++-.....++++.++++......+.+...+....+.++++++.++..+.+
T Consensus 650 ~s~~~i~k~~~pe~~~-----l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~ 724 (1228)
T KOG0055|consen 650 VSFWRIFKLNKPEWPY-----LLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITN 724 (1228)
T ss_pred ccHHHHHHhccchhHH-----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999998874 55666666676677778888899999888755433322221123333333333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR--ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1099)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~--~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~ 243 (1099)
+++.++-...-++++.|+|.+.|+++++++++|||.. .+.+.+|+.+|...+...+.+-+..++..+... +..+.+.
T Consensus 725 ~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~-~~~iiia 803 (1228)
T KOG0055|consen 725 FLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAV-IIGIIIA 803 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4444444344444999999999999999999999852 367788999999988777776666666555432 3344566
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 001329 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1099)
Q Consensus 244 ~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~ 323 (1099)
++++|.+++++++..|++.+......+.+.....+..+...+......+..+|+++|++|+.|++..+.+.+..+. .
T Consensus 804 f~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~---p 880 (1228)
T KOG0055|consen 804 FIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEK---P 880 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHH---H
Confidence 7889999999999999888777666666666666666666667788888999999999999998886444433333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 324 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1099)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~ 402 (1099)
.+...+..++.++...+...++....++.++ +++.+. .+..+... ++.. +..+......+++......+
T Consensus 881 ~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~----~G~~Li~~g~~~~~~--~~~v----f~~l~~ta~~~~~~~s~~Pd 950 (1228)
T KOG0055|consen 881 RKSSFKRGLISGLGFGFSQSLLFFVYALSFW----YGARLISNGEMTFED--VFRV----FMALSFTAMALGQASSYAPD 950 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHhcCCcCHHH--HHHH----HHHHHHHHHHHHHHHhhCcH
Confidence 3333455566666555544444445555554 333332 23333332 1111 11122222445566667788
Q ss_pred HHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEEcCC
Q 001329 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPN 480 (1099)
Q Consensus 403 l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~--~~vL~~vsl~i~~Ge~vaIvG~s 480 (1099)
+.++..++.++++++|.++.++.++. .........+.|+++||+|.||.. .++++|+||+|++|+++||||||
T Consensus 951 ~~ka~~Aa~~iF~i~dr~~~i~~~~~-----~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~S 1025 (1228)
T KOG0055|consen 951 ISKAKIAAGSIFEILDRKPTIDPDST-----SGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPS 1025 (1228)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCC-----CCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCC
Confidence 99999999999999998875543210 111112235789999999999963 58999999999999999999999
Q ss_pred CCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHH
Q 001329 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1099)
Q Consensus 481 GsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~ 554 (1099)
||||||++.+|.|+|+|++|.|.+||.| +.+|++|+.|.|+|.||++||+|||+||.. +.+.+++.++
T Consensus 1026 GsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~------~vs~~eIi~A 1099 (1228)
T KOG0055|consen 1026 GSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE------EVSEEEIIEA 1099 (1228)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC------CCCHHHHHHH
Confidence 9999999999999999999999999987 467999999999999999999999999932 1588999999
Q ss_pred HHhcCChhHHhcCCCCcccC---CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEE
Q 001329 555 LKNVDLEYLLDRYPPEKEIN---WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1099)
Q Consensus 555 l~~~~l~~~~~~~p~~~~~~---~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI 629 (1099)
++.+++++|+..+|+++++. .|.+||||||||+|||||+++||+||||||+|||||.++|+.++++|++ .|+|+|
T Consensus 1100 ak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~I 1179 (1228)
T KOG0055|consen 1100 AKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTI 1179 (1228)
T ss_pred HHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEE
Confidence 99999999999999988773 6889999999999999999999999999999999999999999999987 499999
Q ss_pred EEccChhHHHhcCEEEEEeCCCceEEeecCCCcc
Q 001329 630 TISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSS 663 (1099)
Q Consensus 630 ~ItH~l~~i~~~D~Il~l~~~g~~~~~~~~~~~~ 663 (1099)
+|+||++++++||.|.|++++ ++.|+++++.
T Consensus 1180 vIAHRLSTIqnaD~I~Vi~~G---~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1180 VIAHRLSTIQNADVIAVLKNG---KVVEQGTHDE 1210 (1228)
T ss_pred EEecchhhhhcCCEEEEEECC---EEEecccHHH
Confidence 999999999999999999975 3444454433
No 7
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.8e-65 Score=626.56 Aligned_cols=532 Identities=15% Similarity=0.180 Sum_probs=394.3
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLR--RVPLFFQLISENILLCFLLSTMHSTSK 165 (1099)
Q Consensus 88 l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~--~~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1099)
+++++++++|+++. ++..+++.++...+....|++.++++|.+... +...++. ..++++++.++..+..
T Consensus 10 ~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 80 (588)
T PRK11174 10 TRWLKQQSKPAKRW-----LNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLP----PFILLILLFVLRALLA 80 (588)
T ss_pred hHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH----HHHHHHHHHHHHHHHH
Confidence 67788999999874 55566666666777788899999999876532 2211211 1112222223344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1099)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~ 244 (1099)
|+..++..+....+..++|.++|+++.+.|.++|++. .++..+|+++|++.+.+.+...+..++..++..+. ...+++
T Consensus 81 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~ 159 (588)
T PRK11174 81 WLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLL-ILIAVF 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 6666666666666888999999999999999999764 56899999999999887776666555555443322 334566
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001329 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1099)
Q Consensus 245 ~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1099)
+++|.+++++++.+|+..++...+.++.++...+.++..+++.....+..+++++||.|+.|+.+.+++++..++..+..
T Consensus 160 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK11174 160 PINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRT 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 78999999888888877777777888888888887888888888888888899999999999999877777666665543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhcccccCCccchhHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 001329 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEP-FFAGNLKPDTSTLGRA--KMLSNLRYH-TSVIISLFQSLGTLSISS 400 (1099)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~-~~~g~l~~~~~tlG~~--~l~a~l~~~-~~~i~~~~~~l~~l~~~~ 400 (1099)
.+..+.. .....+........+.+++++.. ++.|.+ ++|.. .+.....+. ..+...++.|+..+...+
T Consensus 240 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~ 311 (588)
T PRK11174 240 MEVLRMA---FLSSAVLEFFASISIALVAVYFGFSYLGEL-----NFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFY 311 (588)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccccccccchHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3322221 11222111111111111111111 111322 33321 000011111 123345667888888889
Q ss_pred HHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCC
Q 001329 401 RRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPN 480 (1099)
Q Consensus 401 ~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~s 480 (1099)
..+.++..+++|+.++++.+++... ..... .. ....+.|+++||+|.|++++++|+|+||+|++||++||||||
T Consensus 312 ~~~~~~~~~~~ri~~~l~~~~~~~~-~~~~~----~~-~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~S 385 (588)
T PRK11174 312 HAKAQAVGAAESLVTFLETPLAHPQ-QGEKE----LA-SNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPS 385 (588)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccC-CCccc----cC-CCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCC
Confidence 9999999999999999976543211 00000 00 011246999999987766678999999999999999999999
Q ss_pred CCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHH
Q 001329 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1099)
Q Consensus 481 GsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~ 554 (1099)
|||||||+++|+|+| |++|+|.+||.+ +++|++|+||||+|++|++||+|||.++.+. .+++++.++
T Consensus 386 GsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~------~~~eei~~a 458 (588)
T PRK11174 386 GAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPD------ASDEQLQQA 458 (588)
T ss_pred CCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCC------CCHHHHHHH
Confidence 999999999999999 899999999975 4678999999999999999999999998542 578999999
Q ss_pred HHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEE
Q 001329 555 LKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1099)
Q Consensus 555 l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI 629 (1099)
++.++++++++++|.++++ +.|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++ .++|+|
T Consensus 459 l~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI 538 (588)
T PRK11174 459 LENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTL 538 (588)
T ss_pred HHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999987665 36889999999999999999999999999999999999999999998876 489999
Q ss_pred EEccChhHHHhcCEEEEEeCC
Q 001329 630 TISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 630 ~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+||||+++++.+|+|++++++
T Consensus 539 iItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 539 MVTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred EEecChHHHHhCCEEEEEeCC
Confidence 999999999999999999864
No 8
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.2e-64 Score=631.87 Aligned_cols=530 Identities=20% Similarity=0.223 Sum_probs=401.7
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHH
Q 001329 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHST 163 (1099)
Q Consensus 85 ~~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~ 163 (1099)
...+++++++++|+++. ++..+++.++.+.+....|.+.+.++|.+.... .+.+...++...+ +.++..+
T Consensus 146 ~~~~~~l~~~~~~~~~~-----l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 216 (711)
T TIGR00958 146 ADLLFRLLGLSGRDWPW-----LISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCL----LSIASSV 216 (711)
T ss_pred hhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHH
Confidence 34678899999988773 556666777777888899999999999887443 2333332222221 1222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1099)
Q Consensus 164 ~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L 242 (1099)
..++...+......++..++|.++|+++.+.|+++|++. .++..+|+++|++.+.+.+...+...+..++..+. ...+
T Consensus 217 ~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~-~~~~ 295 (711)
T TIGR00958 217 SAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLG-LLGF 295 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 344444444445555788899999999999999999764 67999999999999887776666555555543332 2334
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 001329 243 CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1099)
Q Consensus 243 ~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~ 322 (1099)
+++++|.+++++++.+|+..++..+++++..+...+.++..++++....+..+++++||.|+.|+.+.+++++..++..+
T Consensus 296 l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~ 375 (711)
T TIGR00958 296 MLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQ 375 (711)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 56689999998888888888888888899988888888888898888899999999999999999998888888777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSR 401 (1099)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~ 401 (1099)
...+.............++. .....++++ +++.+ ..+..+.|. +++++. +...+..++..+...+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~---~~~~~~il~----~g~~lv~~g~it~G~--lva~~~----~~~~l~~~l~~l~~~~~ 442 (711)
T TIGR00958 376 LNKRKALAYAGYLWTTSVLG---MLIQVLVLY----YGGQLVLTGKVSSGN--LVSFLL----YQEQLGEAVRVLSYVYS 442 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHH
Confidence 44332221111111111111 111111222 12222 123445653 333332 23455678888888999
Q ss_pred HHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEEcC
Q 001329 402 RLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGP 479 (1099)
Q Consensus 402 ~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~--~~~vL~~vsl~i~~Ge~vaIvG~ 479 (1099)
.+++..++.+|+.++++.+++.+.+... ......+.|+++||+|.||+ ++++|+|+||+|++||+++||||
T Consensus 443 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~-------~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~ 515 (711)
T TIGR00958 443 GMMQAVGASEKVFEYLDRKPNIPLTGTL-------APLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGP 515 (711)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCC-------CCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECC
Confidence 9999999999999999866543211100 00112356999999999985 35899999999999999999999
Q ss_pred CCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHH
Q 001329 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE 553 (1099)
Q Consensus 480 sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~ 553 (1099)
||||||||+++|+|+|+|++|+|.+||++ .++|++|+||||||++|++||+|||.++.+. .+++++.+
T Consensus 516 SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~------~~~e~i~~ 589 (711)
T TIGR00958 516 SGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD------TPDEEIMA 589 (711)
T ss_pred CCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCC------CCHHHHHH
Confidence 99999999999999999999999999976 3578899999999999999999999998643 46889999
Q ss_pred HHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEE
Q 001329 554 LLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCIT 630 (1099)
Q Consensus 554 ~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ 630 (1099)
+++.++++++++++|.+.++ ++|.+||||||||++||||++++|+|+|||||||+||+++++.+++.....++|+|+
T Consensus 590 al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIi 669 (711)
T TIGR00958 590 AAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLL 669 (711)
T ss_pred HHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEE
Confidence 99999999999999986655 367899999999999999999999999999999999999999999844446899999
Q ss_pred EccChhHHHhcCEEEEEeCC
Q 001329 631 ISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 631 ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||||+++++.+|+|++|+++
T Consensus 670 ItHrl~~i~~aD~IivL~~G 689 (711)
T TIGR00958 670 IAHRLSTVERADQILVLKKG 689 (711)
T ss_pred EeccHHHHHhCCEEEEEECC
Confidence 99999999999999999864
No 9
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2.9e-65 Score=602.23 Aligned_cols=543 Identities=28% Similarity=0.476 Sum_probs=444.2
Q ss_pred HHHHHHHHhhchhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 001329 88 LQVLAAILLSEMGKM----GARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHST 163 (1099)
Q Consensus 88 l~~Ll~~~~p~~~~~----~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 163 (1099)
+++++.+.+|||.+. .+..+++++++.++.+..+++++.|.+.|++++...+...|+..+..+.++..+...+...
T Consensus 26 ~~qfw~i~r~yw~~~~~~~~~~l~~~i~~~~l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~ 105 (604)
T COG4178 26 GRQFWMIARAYWASPVRKRAWLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVA 105 (604)
T ss_pred HHHHHHHhhhhccCccchHHHHHHHHHHHHHHHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666665543 3333445555666666777789999999999999999888888877666666555566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc--CCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVD--GRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWR 241 (1099)
Q Consensus 164 ~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~--~~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~ 241 (1099)
..|+...+..+||+|+++++.++|+++..+|...+.+ +.++||||||++|+..+++...++..+++.+++..+.|+.+
T Consensus 106 ~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~i 185 (604)
T COG4178 106 QTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGI 185 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998886 44689999999999999999999999999998888777666
Q ss_pred HHH-------------HhhhhHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH
Q 001329 242 LCS-------------YASPKYVFWI-LAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN 307 (1099)
Q Consensus 242 L~~-------------~~~~~l~l~i-l~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~ 307 (1099)
|+. +..|++++++ ++|+++..+++.+++|++.+++.++++.+|+||+.+.++++++|.|++|+||+
T Consensus 186 Lw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~ 265 (604)
T COG4178 186 LWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEK 265 (604)
T ss_pred HHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcH
Confidence 651 3456777665 55666777788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHH
Q 001329 308 KEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVII 387 (1099)
Q Consensus 308 ~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~ 387 (1099)
.|+.+++++|..+.+++++..........++..+. .+..++++++..+.|+.|.+ ++|..+ ...+.+.
T Consensus 266 ~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~-~~s~v~P~li~ap~~f~g~i-----~~G~lm------qa~~aF~ 333 (604)
T COG4178 266 VERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYG-WLSVVLPILIAAPRYFSGQI-----TFGGLM------QAVGAFG 333 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhh-HHHHHHHHHhccHhhhcCcC-----hHHHHH------HHHHHHH
Confidence 99999999999999999888777777776666544 23334555555566776665 555321 1234456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCC--CCcEEEEeeEEEcCCCCceeeeee
Q 001329 388 SLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSE--ANYIEFSGVKVVTPTGNVLVENLT 465 (1099)
Q Consensus 388 ~~~~~l~~l~~~~~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~--~~~I~~~~v~~~y~~~~~vL~~vs 465 (1099)
....+++.+...+.++..+.+...|+.++.+.......+............... ...|+++|+++..|++++.+++.|
T Consensus 334 ~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~~l~ 413 (604)
T COG4178 334 QVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELN 413 (604)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCeeeccce
Confidence 667888889999999999999999999987544321111111111000000011 467999999999998899999999
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCc
Q 001329 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP 545 (1099)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~ 545 (1099)
|++++||.+.|.||||||||||+|+|+|+||..+|+|.++.. ..+.|+||.||++.||+||.|+||...+ .
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----~~~lflpQ~PY~p~GtLre~l~YP~~~~----~ 484 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----SALLFLPQRPYLPQGTLREALCYPNAAP----D 484 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----CceEEecCCCCCCCccHHHHHhCCCCCC----C
Confidence 999999999999999999999999999999999999999842 3689999999999999999999997653 2
Q ss_pred CCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--
Q 001329 546 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-- 623 (1099)
Q Consensus 546 ~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~-- 623 (1099)
.+++++.++|.++||+++.+++ +....|...||+|||||||+||.++++|++++|||+|||||+++|..+++++++
T Consensus 485 ~~d~~l~~vL~~vgL~~L~~rl--~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l 562 (604)
T COG4178 485 FSDAELVAVLHKVGLGDLAERL--DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL 562 (604)
T ss_pred CChHHHHHHHHHcCcHHHHHHH--hccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC
Confidence 6889999999999999999995 344569999999999999999999999999999999999999999999999998
Q ss_pred cCcEEEEEccChhHHHhcCEEEEEeCCCce
Q 001329 624 MGTSCITISHRPALVAFHDVVLSLDGEGEW 653 (1099)
Q Consensus 624 ~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~ 653 (1099)
.+.|+|.|+||..+...+++.+.+.+++++
T Consensus 563 p~~tvISV~Hr~tl~~~h~~~l~l~~~~~~ 592 (604)
T COG4178 563 PDATVISVGHRPTLWNFHSRQLELLDDAGG 592 (604)
T ss_pred CCCEEEEeccchhhHHHHhhheeecccccc
Confidence 699999999999999999999999877655
No 10
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.4e-64 Score=619.26 Aligned_cols=529 Identities=19% Similarity=0.196 Sum_probs=393.9
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH----HHHHHH
Q 001329 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCF----LLSTMH 161 (1099)
Q Consensus 86 ~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~----~~~~~~ 161 (1099)
..+..|+++...+-. .+++...+.+++.-.....+..+.+.+++.+...........+..+.+..+ ++.+..
T Consensus 13 ~~~~~lf~~a~~~D~----~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~ 88 (1228)
T KOG0055|consen 13 VSFFKLFRFADRFDY----LLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISG 88 (1228)
T ss_pred cchHHheeccchhhH----HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544322 123334444444434444667777788877765442111112222222222 222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 162 STSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240 (1099)
Q Consensus 162 ~~~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~ 240 (1099)
++........+.+ ...++|++|++.+++++++|||.. .++..+|+++|++.+.+.+.+-+..++..+.+ ++.+.
T Consensus 89 ~~q~~c~~~~geR----q~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~-fi~g~ 163 (1228)
T KOG0055|consen 89 FIQVSCWMRTGER----QTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLAT-FIAGF 163 (1228)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3444444555555 788999999999999999999975 46899999999999988888877766655543 33345
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 001329 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKAL 320 (1099)
Q Consensus 241 ~L~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l 320 (1099)
++.++..|.++++++.+.|++.+....+.+.+.+...+++...++.....++...++++|.+|++|+.|.. +|.+.
T Consensus 164 ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~----ry~~~ 239 (1228)
T KOG0055|consen 164 VIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIE----RYSKA 239 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHH----HHHHH
Confidence 56778899999999999999988888888999999999999999888899999999999999999999974 44444
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 001329 321 TRHM-RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRA--KMLSNLRYHTSVIISLFQSLGTL 396 (1099)
Q Consensus 321 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~--~l~a~l~~~~~~i~~~~~~l~~l 396 (1099)
.... +...+...+.++..++...++.+..+..+|+ ++.+. .+..+.|.. .+++ +..--.++++.
T Consensus 240 L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~Wy----G~~li~~~~~~~g~v~~v~~~--------vl~g~~sLgqa 307 (1228)
T KOG0055|consen 240 LENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWY----GSTLILNGGYNGGDVITVFFS--------VLIGGMSLGQA 307 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHhcCCCCCceEEEEEee--------hhhhhhhhhcc
Confidence 4332 2234455555555544433344444444543 32221 111122210 0111 11112356666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC--CceeeeeeEEEeCCCEE
Q 001329 397 SISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNL 474 (1099)
Q Consensus 397 ~~~~~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~--~~vL~~vsl~i~~Ge~v 474 (1099)
......+..+.+++.+|+++++..+.++... . .........+.|+|+||+|+||.. .++|+|+||+|++||++
T Consensus 308 ~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~-~----~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~v 382 (1228)
T KOG0055|consen 308 SPHLSAFAKARAAAYRIFETIDRKPSIDPYS-K----GGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTV 382 (1228)
T ss_pred ccchHHHhccccchHHHHHHhcCCCCCCccc-c----cCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEE
Confidence 6677788889999999999998776654221 1 011112246789999999999975 48999999999999999
Q ss_pred EEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCH
Q 001329 475 LITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH 548 (1099)
Q Consensus 475 aIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~ 548 (1099)
+|||||||||||++++|.|+|+|++|+|.+||.| +.+|++||+|.|+|.+|.+||+|||.|+.++ ++.
T Consensus 383 alVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~d------at~ 456 (1228)
T KOG0055|consen 383 ALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPD------ATR 456 (1228)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCc------ccH
Confidence 9999999999999999999999999999999986 4678999999999999999999999999764 688
Q ss_pred HHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--
Q 001329 549 GGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-- 623 (1099)
Q Consensus 549 ~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~-- 623 (1099)
+++.++++.++.++|+..+|.++++ +.|.+|||||||||||||||+++|+||||||||||||+++|+.++++|++
T Consensus 457 ~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~ 536 (1228)
T KOG0055|consen 457 EEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS 536 (1228)
T ss_pred HHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh
Confidence 9999999999999999999987665 46889999999999999999999999999999999999999999999986
Q ss_pred cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 624 MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 624 ~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
.|+|.|+||||+++++++|+|++|+++
T Consensus 537 ~grTTivVaHRLStIrnaD~I~v~~~G 563 (1228)
T KOG0055|consen 537 KGRTTIVVAHRLSTIRNADKIAVMEEG 563 (1228)
T ss_pred cCCeEEEEeeehhhhhccCEEEEEECC
Confidence 599999999999999999999999975
No 11
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2.7e-68 Score=608.99 Aligned_cols=346 Identities=27% Similarity=0.423 Sum_probs=322.6
Q ss_pred CCCCchhhhhcccccCCCceeecCCCeeEehhhHHHHhhHHHHHHHhc-CCcchhHHhhcCHHHHHHHHHHHHhhhhhHH
Q 001329 734 APRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASL-NGTTVKYVLEQDKASFVRLIGVSVLQSAASS 812 (1099)
Q Consensus 734 ~~~~~p~Ra~~lCri~iP~l~s~e~g~lv~c~~~lv~Rt~ls~~va~l-~g~~v~~iv~~~~~~F~~~l~~~~~~~~~~s 812 (1099)
.+..++.+..++.++.+|+..+++...+.+..+.+++||....|+... .|.+-.+++.||...|.+.+...++..+..+
T Consensus 57 ~~~~f~~k~~~ilkil~p~~~~~~~~~l~l~~~~l~~~~~~~~y~~~~~~~~~y~al~~kd~~~F~~~~~~~~~~~~~~s 136 (659)
T KOG0060|consen 57 LDKVFFQKFLQILKILFPSTFSSQTALLLLALVALTLLTTADVYMIGNIPTKFYVALINKDAELFKRLLFKYVLLIPGIS 136 (659)
T ss_pred hhHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHhHhheecccchhhHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 334456789999999999999999999999999999999999998877 6677799999999999999999999988899
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHH
Q 001329 813 FIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWF 892 (1099)
Q Consensus 813 ~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~~~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~ 892 (1099)
.+|+..+|..+.|+|+||.|||+|+|+.||+|++|||++|+|+||+|||||||+||+|||+.+++||||++||.+|+++|
T Consensus 137 ~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y 216 (659)
T KOG0060|consen 137 LLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYY 216 (659)
T ss_pred HHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCcchHHHHHHHHHHHHHHHhhcCCcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHH
Q 001329 893 TWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFR 972 (1099)
Q Consensus 893 ~~~l~~~~g~~g~~~~~~~~~~~~~~lr~~~P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~ 972 (1099)
+|+|.++.|+.||..+++|+++++++.|.+.||+|+++++||++||||||.|+|+++||||||||+|+++|+..+++.|+
T Consensus 217 ~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~ 296 (659)
T KOG0060|consen 217 TFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFR 296 (659)
T ss_pred hhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhccchhhhhhhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Q 001329 973 ELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILEL 1052 (1099)
Q Consensus 973 ~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~ 1052 (1099)
+|++|++.++.+|||.+++||++- |+.++++|++++.|+|+.. .-+.. +.+|+..+.+-..++...++.|+|||+.+
T Consensus 297 ~Lv~~l~~l~~~r~~l~f~~n~~~-Ylg~ilsy~vi~~p~Fs~h-~y~~~-s~aEL~~~i~~na~~~i~Li~~f~~l~~~ 373 (659)
T KOG0060|consen 297 NLVQHLRELMSFRFWLGFIDNIFD-YLGGILSYVVIAIPFFSGH-VYDDL-SPAELSGLISNNAFVFIYLISAFGRLVDL 373 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhhheeeEEeeeeeccc-ccCCc-CHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 9999999999999999842 11222 25577766666666666689999999999
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHhCCCCCc
Q 001329 1053 HRKFVELSGGINRIFELEELLDAAQPGTPS 1082 (1099)
Q Consensus 1053 ~k~~~~laG~t~Rv~el~~~l~~~~~g~~~ 1082 (1099)
.+++++|||||+||+||.||++|++.|.++
T Consensus 374 ~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~ 403 (659)
T KOG0060|consen 374 SRDLSRLSGYTHRIGELMEVLDDLSSGSQE 403 (659)
T ss_pred hhhHHHhhhHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999999999998764
No 12
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.9e-63 Score=620.98 Aligned_cols=535 Identities=19% Similarity=0.230 Sum_probs=401.4
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1099)
Q Consensus 87 ~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1099)
.++.++++++++++. ++..+++.++...++...|.+.+.++|.+...+..... ....+.++++.++..+..+
T Consensus 141 ~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l---~~~~~~~~~~~~~~~~~~~ 212 (710)
T TIGR03796 141 LLRALWRRLRGSRGA-----LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWL---RPLLLGMGLTALLQGVLTW 212 (710)
T ss_pred cHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHH---HHHHHHHHHHHHHHHHHHH
Confidence 466777888888764 44455555566677778899999999987654322211 1111112222333455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1099)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~ 245 (1099)
+..++..++..++..+++.++|+++.++|+++|+++ .++..+|+++| +.+.+.+...+...+..++..+++ ..++++
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 290 (710)
T TIGR03796 213 LQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFY-ALLMLL 290 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 777777777777888999999999999999999765 67899999988 566665555444444444333332 234567
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 001329 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1099)
Q Consensus 246 ~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~ 325 (1099)
++|.+++++++.+++..++..++.++..+...+.++..++......+...++++||.++.|+.+.++|++.+.+..+...
T Consensus 291 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 370 (710)
T TIGR03796 291 YDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQ 370 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999888888777777888888888888888888888888888888999999999999999888888877766544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1099)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~ 404 (1099)
+..+...+...+..++. .....+++++ ++.+ ..+..++|. +++++ .+...++.|+..+...+.+++
T Consensus 371 ~~~~~~~~~~~~~~~i~---~~~~~~il~~----g~~~v~~g~lt~G~--lva~~----~l~~~~~~p~~~l~~~~~~~~ 437 (710)
T TIGR03796 371 ELGVLTQILGVLPTLLT---SLNSALILVV----GGLRVMEGQLTIGM--LVAFQ----SLMSSFLEPVNNLVGFGGTLQ 437 (710)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHcCCCCHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 43332222222222221 1111222221 2222 123446664 33433 234455678888888999999
Q ss_pred HHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCCCc
Q 001329 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSG 483 (1099)
Q Consensus 405 ~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sGsG 483 (1099)
.+..+.+|+.++++.+++....................+.|+++||+|+|++ ++++|+|+||+|++||+++||||||||
T Consensus 438 ~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsG 517 (710)
T TIGR03796 438 ELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSG 517 (710)
T ss_pred HHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCC
Confidence 9999999999999876543211100000000000112457999999999985 468999999999999999999999999
Q ss_pred hhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHh
Q 001329 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1099)
Q Consensus 484 KSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~ 557 (1099)
||||+|+|+|+|+|++|+|.+||.+ .++|++|+||||+|++|++||+|||.++.+. .+++++.++++.
T Consensus 518 KSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~------~~~~~i~~al~~ 591 (710)
T TIGR03796 518 KSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPT------IPDADLVRACKD 591 (710)
T ss_pred HHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCC------CCHHHHHHHHHH
Confidence 9999999999999999999999976 3578999999999999999999999986432 578899999999
Q ss_pred cCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccC
Q 001329 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHR 634 (1099)
Q Consensus 558 ~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~ 634 (1099)
++++++++++|.+.++ +.|.+||||||||++|||||+++|+++|||||||+||+++|+++++.+++.++|+|+||||
T Consensus 592 ~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHr 671 (710)
T TIGR03796 592 AAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHR 671 (710)
T ss_pred hCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecC
Confidence 9999999999986654 4688999999999999999999999999999999999999999999998889999999999
Q ss_pred hhHHHhcCEEEEEeCC
Q 001329 635 PALVAFHDVVLSLDGE 650 (1099)
Q Consensus 635 l~~i~~~D~Il~l~~~ 650 (1099)
+++++.+|+|++|+++
T Consensus 672 l~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 672 LSTIRDCDEIIVLERG 687 (710)
T ss_pred HHHHHhCCEEEEEeCC
Confidence 9999999999999864
No 13
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.6e-63 Score=601.88 Aligned_cols=515 Identities=19% Similarity=0.192 Sum_probs=375.0
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 89 QVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYIT 168 (1099)
Q Consensus 89 ~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~ 168 (1099)
++++++++|+++. ++..+++.++.+.+.+..|.+.++++|....... .+.. ...++.+++..++..+..|+.
T Consensus 2 ~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~ 73 (529)
T TIGR02868 2 LRILPLLQPRTRR-----LVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYL--SVAAVAVRAFGIGRAVFRYLE 73 (529)
T ss_pred hhHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888764 4445555666677777889999999987764322 1111 101111111223344556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001329 169 GTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247 (1099)
Q Consensus 169 ~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~ 247 (1099)
.++..+...++..++|.++|+++.+.|.++|++. .++..+|+++|++.+...+...+..++..++..++ ...++++++
T Consensus 74 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 152 (529)
T TIGR02868 74 RLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSA-AVAAIALLS 152 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 6676666677888999999999999999999764 67999999999999887776666555555443322 234456789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 001329 248 PKYVFWILAYVLGAGTMMRNFSPAF-GKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1099)
Q Consensus 248 ~~l~l~il~~~~~~~~i~~~~~~~~-~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~ 326 (1099)
|.+++++++.+|+..++..++.++. ++..++.++..+++.....+..+++++||.|+.|+.+.+++++..++..+...+
T Consensus 153 ~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (529)
T TIGR02868 153 VPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERR 232 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877676666665555544 444555666677788888888889999999999999987777766655544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 405 (1099)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~ 405 (1099)
.. +..+....+..........++++ +++.. ..+..+.|. +++++.+ ...++.++..+...+..+++
T Consensus 233 ~~---~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~g~~t~g~--l~~~~~~----~~~~~~~~~~l~~~~~~~~~ 299 (529)
T TIGR02868 233 AA---RATGLGAAAQLLAAGLAVLGALW----AGGPAVADGTLAPAT--LAVLVLL----PLAAFEAFAPLPAAAQALTR 299 (529)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCChhH--HHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 22 22222222221111122222222 22222 123445553 3333322 23445677777778888999
Q ss_pred HHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchh
Q 001329 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKS 485 (1099)
Q Consensus 406 ~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKS 485 (1099)
+..+.+|+.++++.+++....... .+ ....+..+.|+++||+|.|++++++|+|+||++++||+++||||||||||
T Consensus 300 ~~~~~~ri~~~l~~~~~~~~~~~~--~~--~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKS 375 (529)
T TIGR02868 300 VRAAAERIEEVTGAKGPRPEGVVP--AA--GALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKS 375 (529)
T ss_pred HHHHHHHHHHHhcCCCCcCCCCCC--CC--cccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHH
Confidence 999999999999766542211100 00 00111234699999999998767899999999999999999999999999
Q ss_pred HHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCC
Q 001329 486 SLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 560 (1099)
Q Consensus 486 TLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l 560 (1099)
||+++|+|+++|++|+|.+||.+ +++|++|+||||+|++|++||+|||.++.+. .+++++.++++.+++
T Consensus 376 TLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~------~~~e~i~~al~~a~l 449 (529)
T TIGR02868 376 TLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPD------ATDEELWAALERVGL 449 (529)
T ss_pred HHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCC------CCHHHHHHHHHHcCC
Confidence 99999999999999999999976 3578899999999999999999999997542 578899999999999
Q ss_pred hhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccCh
Q 001329 561 EYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRP 635 (1099)
Q Consensus 561 ~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l 635 (1099)
+++++++|++.++ ++|.+||||||||++||||++++|+++|||||||+||+++|+.+++.+++. ++|+|+||||+
T Consensus 450 ~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 450 ADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999987665 468899999999999999999999999999999999999999999998764 89999999985
No 14
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.2e-63 Score=620.31 Aligned_cols=531 Identities=17% Similarity=0.184 Sum_probs=401.0
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSK 165 (1099)
Q Consensus 86 ~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1099)
..+++++++++++++. ++..+++.++..++++..|.+.+.++|.+........ +....+.++++.++..+..
T Consensus 142 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~---l~~~~~~~~~~~~~~~~~~ 213 (708)
T TIGR01193 142 NSLLKFIPLITRQKKL-----IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGT---LGIISIGLIIAYIIQQILS 213 (708)
T ss_pred chHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH---HHHHHHHHHHHHHHHHHHH
Confidence 3467788888888774 4455556666677788889999999988764332111 1111111122223344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1099)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~ 244 (1099)
++..++..++..++..+++.++|+++.++|+.+|+++ .++..+|++ |++.+.+.+...+...+..++..+++ ..+++
T Consensus 214 ~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~ 291 (708)
T TIGR01193 214 YIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIV-GLFLV 291 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 6666777777777888999999999999999999765 678899998 88887666554444333333222222 23456
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001329 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1099)
Q Consensus 245 ~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1099)
+++|.+++++++.+|+..++...+.++.++...+.++..++......+...++++||+++.|+.+.+++++.+++..+..
T Consensus 292 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 371 (708)
T TIGR01193 292 RQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKS 371 (708)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 68999999988888888888888889998888888888888888888888999999999999999988888887776654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1099)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l 403 (1099)
.+..+.......+..++. .....++++ +++.+ ..+..|+|. ++++.. +...++.|+..+...+.++
T Consensus 372 ~~~~~~~~~~~~~~~~~~---~~~~i~il~----~g~~lv~~g~ls~G~--lva~~~----l~~~~~~pl~~l~~~~~~~ 438 (708)
T TIGR01193 372 FKYQKADQGQQAIKAVTK---LILNVVILW----TGAYLVMRGKLTLGQ--LITFNA----LLSYFLTPLENIINLQPKL 438 (708)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 433322222222222211 111112222 12222 134456664 344332 3345567888888999999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCc
Q 001329 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSG 483 (1099)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsG 483 (1099)
+.+..+.+|+.++++.++|...+... . ......+.|+++||+|.|++++++|+|+||+|++||+++|+||||||
T Consensus 439 ~~~~~~~~ri~~~l~~~~e~~~~~~~-~-----~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsG 512 (708)
T TIGR01193 439 QAARVANNRLNEVYLVDSEFINKKKR-T-----ELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSG 512 (708)
T ss_pred HHHHHHHHHHHHHHcCCCcccccccc-c-----CCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCC
Confidence 99999999999999866543211100 0 01112457999999999986678999999999999999999999999
Q ss_pred hhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHh
Q 001329 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1099)
Q Consensus 484 KSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~ 557 (1099)
||||+++|+|+|+|++|+|.+||.+ .++|++|+||||+|++|++||+|||.++... ..+++++.++++.
T Consensus 513 KSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~-----~~~~~~i~~a~~~ 587 (708)
T TIGR01193 513 KSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE-----NVSQDEIWAACEI 587 (708)
T ss_pred HHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCC-----CCCHHHHHHHHHH
Confidence 9999999999999999999999976 4678999999999999999999999997321 2578899999999
Q ss_pred cCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-cCcEEEEEcc
Q 001329 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-MGTSCITISH 633 (1099)
Q Consensus 558 ~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~-~g~TvI~ItH 633 (1099)
++++++++++|.+.++ ++|.+||||||||++||||++++|+++|||||||+||+++|+.+++.+++ .|+|+|+|||
T Consensus 588 a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitH 667 (708)
T TIGR01193 588 AEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAH 667 (708)
T ss_pred hCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEec
Confidence 9999999999986655 46889999999999999999999999999999999999999999998876 4899999999
Q ss_pred ChhHHHhcCEEEEEeCC
Q 001329 634 RPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 634 ~l~~i~~~D~Il~l~~~ 650 (1099)
|+++++.+|+|++|+++
T Consensus 668 r~~~~~~~D~i~~l~~G 684 (708)
T TIGR01193 668 RLSVAKQSDKIIVLDHG 684 (708)
T ss_pred chHHHHcCCEEEEEECC
Confidence 99999999999999864
No 15
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-61 Score=637.53 Aligned_cols=533 Identities=14% Similarity=0.157 Sum_probs=380.4
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1099)
Q Consensus 87 ~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1099)
.+.++++|..+..+. .+++.++++++...+...+|.+.+.+++.+.... .....++ .++++.++..+..|
T Consensus 46 ~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~--~~~~~~~----~~~~~~i~~~~~~~ 115 (1466)
T PTZ00265 46 PFFLPFKCLPASHRK----LLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE--NVNDIIF----SLVLIGIFQFILSF 115 (1466)
T ss_pred cHHHHHhcCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHHHH----HHHHHHHHHHHHHH
Confidence 466677777554332 3455555666666666778888888888654221 1111111 11112222333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCC-ChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRIT-HPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1099)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~~~-n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~ 245 (1099)
+..++....-.++..++|.++|++++++|++||++..+ ...+|+++|++.+...+...+..++..++. ++..++++++
T Consensus 116 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~-~i~~~i~~~~ 194 (1466)
T PTZ00265 116 ISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASA-FLGLYIWSLF 194 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 44444444455588899999999999999999987643 677888888888777666666666555443 2334556778
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 001329 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1099)
Q Consensus 246 ~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~ 325 (1099)
++|.+++++++.+|++.++..++.+++.+...+.++..++.....++...++++||+|++|+.+.+++++..++..+..
T Consensus 195 ~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~- 273 (1466)
T PTZ00265 195 KNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI- 273 (1466)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHH-
Confidence 8999999999888988888888888887777777777788888899999999999999999999866655444433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccC---------CccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKP---------DTSTLGRAKMLSNLRYHTSVIISLFQSLGTL 396 (1099)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~---------~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l 396 (1099)
.+.....++..++...+..+..++++++ ++.+.. +..+.| .+++.+.+. +. .+..+..+
T Consensus 274 --~k~~~~~~~~~~~~~~~~~~~~~l~~~~----G~~lv~~g~~~~~~~~~~t~g--~v~~~~~~~---l~-~~~~l~~i 341 (1466)
T PTZ00265 274 --LKANFMESLHIGMINGFILASYAFGFWY----GTRIIISDLSNQQPNNDFHGG--SVISILLGV---LI-SMFMLTII 341 (1466)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCcccccccccchh--HHHHHHHHH---HH-HHHHHHHH
Confidence 2233333333333322222233333332 332221 122333 223322111 11 11233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC--CceeeeeeEEEeCCCEE
Q 001329 397 SISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNL 474 (1099)
Q Consensus 397 ~~~~~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~--~~vL~~vsl~i~~Ge~v 474 (1099)
...+..++.+..+++|++++++.+++.+..... .. .+....|+++||+|.|++. .++|+|+||+|++||++
T Consensus 342 ~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~------~~-~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~v 414 (1466)
T PTZ00265 342 LPNITEYMKSLEATNSLYEIINRKPLVENNDDG------KK-LKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTY 414 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC------cc-CCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEE
Confidence 556778889999999999999876553211100 00 1112369999999999853 47999999999999999
Q ss_pred EEEcCCCCchhHHHHHhcCcCcCCccEEEeC-CCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCC------
Q 001329 475 LITGPNGSGKSSLFRVLGGLWPLVSGHIAKP-GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ------ 541 (1099)
Q Consensus 475 aIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~-g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~------ 541 (1099)
||+||||||||||+++|+|+++|++|+|.++ |.+ ..+|++|+||+|+|.+|++||+|||.++.....
T Consensus 415 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~ 494 (1466)
T PTZ00265 415 AFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALS 494 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhc
Confidence 9999999999999999999999999999994 554 346889999999999999999999998742100
Q ss_pred ---------------------------------------------cCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---
Q 001329 542 ---------------------------------------------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI--- 573 (1099)
Q Consensus 542 ---------------------------------------------~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~--- 573 (1099)
.....+++++.++++.++++++++++|.++++
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg 574 (1466)
T PTZ00265 495 NYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG 574 (1466)
T ss_pred cccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC
Confidence 00134678899999999999999999987654
Q ss_pred CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeC
Q 001329 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 574 ~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
..|.+|||||||||+|||||+++|++||||||||+||+.++..+++.+++ .|+|+|+||||+++++.||+|++|++
T Consensus 575 ~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 35789999999999999999999999999999999999999999988865 37999999999999999999999987
Q ss_pred C
Q 001329 650 E 650 (1099)
Q Consensus 650 ~ 650 (1099)
+
T Consensus 655 g 655 (1466)
T PTZ00265 655 R 655 (1466)
T ss_pred C
Confidence 4
No 16
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.7e-63 Score=603.64 Aligned_cols=529 Identities=19% Similarity=0.229 Sum_probs=391.4
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh---HHHHHHHHHHHHHHHHHHHHHHH
Q 001329 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVP---LFFQLISENILLCFLLSTMHSTS 164 (1099)
Q Consensus 88 l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~---~~~~~l~~~~~l~~~~~~~~~~~ 164 (1099)
+++++++++|+++. ++..+++.++...+++..|.+.++++|.....+.. .+.. ++ ..+.++++.++..+.
T Consensus 4 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~ 76 (574)
T PRK11160 4 LLPFLKLYKRHWFM-----LSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNY-ML-PAAGVRGAAIGRTAG 76 (574)
T ss_pred hHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH-Hh-HHHHHHHHHHHHHHH
Confidence 55777888888774 44556666666777888999999999976532211 1111 11 111111222233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1099)
Q Consensus 165 ~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~ 243 (1099)
.|+..++..+....+..++|.++|+|+...|..++++. .++..+|+++|++.+...+...+..++..++..+. +..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~-~~~~l 155 (574)
T PRK11160 77 RYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILV-LTIGL 155 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 55666566565566888999999999999999999764 67999999999999888777766666655544332 33456
Q ss_pred HHhhhhHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 001329 244 SYASPKYVFWILAYVLGAGTMM-RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1099)
Q Consensus 244 ~~~~~~l~l~il~~~~~~~~i~-~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~ 322 (1099)
++++|.+++++++.+|+..+++ ..+.+..++..++.++..+++.....+...++++||.|+.|+.+.+++++..++..+
T Consensus 156 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~ 235 (574)
T PRK11160 156 SFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLA 235 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 6789999998877666555443 445566677777778888888888888888999999999999998877777776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1099)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~ 402 (1099)
...+..+. .+....+.........+++++ +++....+..+.|. +++++.+.. ...+.++..+...+..
T Consensus 236 ~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~----~g~~~~~g~~t~g~--l~a~~~~~~---~~~~~~~~~l~~~~~~ 303 (574)
T PRK11160 236 AQRRQANL---TGLSQALMILANGLTVVLMLW----LAAGGVGGNAQPGA--LIALFVFAA---LAAFEALMPVAGAFQH 303 (574)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHhccccchhH--HHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44433222 222222222122222222222 22222233445553 333332221 1223455566667788
Q ss_pred HHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCC
Q 001329 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNG 481 (1099)
Q Consensus 403 l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sG 481 (1099)
+++...+++|+.++++.+++...+.... . ....+.|+++||+|.|+++ +++|+|+||++++||+++|+||||
T Consensus 304 ~~~~~~s~~ri~~ll~~~~~~~~~~~~~------~-~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sG 376 (574)
T PRK11160 304 LGQVIASARRINEITEQKPEVTFPTTST------A-AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTG 376 (574)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcccC------C-CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCC
Confidence 8999999999999998765432111000 0 1123569999999999764 579999999999999999999999
Q ss_pred CchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHH
Q 001329 482 SGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555 (1099)
Q Consensus 482 sGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l 555 (1099)
||||||+++|+|+++|++|+|.+||.+ .++|++|+||||||++|++|++|||.++.+. .+++++.+++
T Consensus 377 sGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~------~~~~~i~~al 450 (574)
T PRK11160 377 CGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPN------ASDEALIEVL 450 (574)
T ss_pred CCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCc------cCHHHHHHHH
Confidence 999999999999999999999999975 3578899999999999999999999997542 5788999999
Q ss_pred HhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEE
Q 001329 556 KNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCIT 630 (1099)
Q Consensus 556 ~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ 630 (1099)
+.+++++++++ |+++++ ++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+
T Consensus 451 ~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tvii 529 (574)
T PRK11160 451 QQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLM 529 (574)
T ss_pred HHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999 987766 36789999999999999999999999999999999999999999998876 3899999
Q ss_pred EccChhHHHhcCEEEEEeCC
Q 001329 631 ISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 631 ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||||+++++.+|+|++|+++
T Consensus 530 itHr~~~~~~~d~i~~l~~G 549 (574)
T PRK11160 530 ITHRLTGLEQFDRICVMDNG 549 (574)
T ss_pred EecChhHHHhCCEEEEEeCC
Confidence 99999999999999999864
No 17
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=9.2e-63 Score=614.85 Aligned_cols=529 Identities=18% Similarity=0.207 Sum_probs=398.9
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1099)
Q Consensus 87 ~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1099)
.+++++++++++++. +...++++++.+.+++..|...+.++|.+........ ++...+.++++.++..+..+
T Consensus 134 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~ 205 (694)
T TIGR03375 134 PKHWFWSTLKESWPL-----YRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFET---LWVLAIGVALAIVFDFVLKT 205 (694)
T ss_pred cchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhH---HHHHHHHHHHHHHHHHHHHH
Confidence 456677888888774 4445555666667778889999999987764332111 11111122222233455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001329 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1099)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~ 246 (1099)
+..++..+...++..+++..+|+|+.++|+++.....++..+|+ +|++.+.+.+...+...+..++..+++. .+++++
T Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 283 (694)
T TIGR03375 206 LRSYFLDVAGKKADLILSAKLFERVLGLRMEARPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFL-LVIAII 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHH
Confidence 77777777777788899999999999999998544567888998 7999887766554433333333232222 345678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 001329 247 SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1099)
Q Consensus 247 ~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~ 326 (1099)
+|.+++++++.+|+..++...+.+++.+...+..+..++......+...++++||.|+.|+.+.+++++.+++..+...+
T Consensus 284 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR03375 284 GGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLK 363 (694)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888878888888899888888888888888888888999999999999999998888888777665444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 405 (1099)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~ 405 (1099)
..+.......+..++ ......++++ +++.+ ..+..++|. +++++. +...++.|+..+...+.+++.
T Consensus 364 ~~~~~~~~~~~~~~~---~~~~~~~il~----~g~~~v~~g~ls~G~--l~a~~~----~~~~~~~p~~~l~~~~~~~~~ 430 (694)
T TIGR03375 364 SRFLSNLATNFAQFI---QQLVSVAIVV----VGVYLISDGELTMGG--LIACVM----LSGRALAPLGQLAGLLTRYQQ 430 (694)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 332222222222221 1111122222 12222 123446663 444332 334556788888888999999
Q ss_pred HHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCCCch
Q 001329 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGK 484 (1099)
Q Consensus 406 ~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sGsGK 484 (1099)
...+.+|+.++++.+++....... .......+.|+++||+|+|++ ++++|+|+||+|++||+++|||||||||
T Consensus 431 ~~~~~~ri~~il~~~~e~~~~~~~------~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGK 504 (694)
T TIGR03375 431 AKTALQSLDELMQLPVERPEGTRF------LHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGK 504 (694)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCC------CCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCH
Confidence 999999999999876543211100 000112357999999999975 4679999999999999999999999999
Q ss_pred hHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhc
Q 001329 485 SSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558 (1099)
Q Consensus 485 STLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~ 558 (1099)
|||+|+|+|+|+|++|+|.+||.+ .++|++|+||||+|++|++||+|||.++.+. .+++++.++++.+
T Consensus 505 STLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~------~~~~~i~~a~~~~ 578 (694)
T TIGR03375 505 STLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPY------ADDEEILRAAELA 578 (694)
T ss_pred HHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCC------CCHHHHHHHHHHc
Confidence 999999999999999999999976 4678999999999999999999999987542 5789999999999
Q ss_pred CChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEcc
Q 001329 559 DLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISH 633 (1099)
Q Consensus 559 ~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH 633 (1099)
+++++++++|.+.++ ++|.+||||||||++||||++++|+++|||||||+||+++|+++++.+++. ++|+|+|||
T Consensus 579 ~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItH 658 (694)
T TIGR03375 579 GVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTH 658 (694)
T ss_pred ChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 999999999986655 468899999999999999999999999999999999999999999988763 899999999
Q ss_pred ChhHHHhcCEEEEEeCC
Q 001329 634 RPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 634 ~l~~i~~~D~Il~l~~~ 650 (1099)
|+++++.||+|++|+++
T Consensus 659 rl~~~~~~D~iivl~~G 675 (694)
T TIGR03375 659 RTSLLDLVDRIIVMDNG 675 (694)
T ss_pred CHHHHHhCCEEEEEeCC
Confidence 99999999999999864
No 18
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=9.8e-63 Score=613.84 Aligned_cols=524 Identities=20% Similarity=0.200 Sum_probs=395.2
Q ss_pred HHHHHHH-HhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 88 LQVLAAI-LLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHSTSK 165 (1099)
Q Consensus 88 l~~Ll~~-~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1099)
+++++++ ++++++. ++..+++.++...+++..|...+.++|.+.... ...++. ..+.++++.++..+..
T Consensus 123 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~----~~~~~~~~~~~~~~~~ 193 (686)
T TIGR03797 123 LRDLLRFALRGARRD-----LLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQ----IALALLAAAVGAAAFQ 193 (686)
T ss_pred HHHHHHHHHhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHH----HHHHHHHHHHHHHHHH
Confidence 4555555 5666553 455555666667788888999999998876432 222221 1122222223344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1099)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~ 244 (1099)
++..++..++...+..+++..+|+++.+.|+++|+++ .++..+|++ |++.+.+.+...+...+..++..++ ...+++
T Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~ 271 (686)
T TIGR03797 194 LAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALL-NLGLMF 271 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 6666666666677888999999999999999999775 568899997 7887766655444333333222222 234456
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001329 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1099)
Q Consensus 245 ~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1099)
+++|.+++++++.+++..++..++.++..+...+.++..++......+...++++||.++.|+.+..+|++.+++..+..
T Consensus 272 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 351 (686)
T TIGR03797 272 YYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLE 351 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 78999999888777777777777888888888888888888888888889999999999999999988888888777655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1099)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l 403 (1099)
.+..+...+...+..++. .....+++++ ++.+ ..+..|+|. ++++.. ....++.|+..+...+.++
T Consensus 352 ~~~~~~~~~~~~~~~~i~---~~~~~~il~~----g~~lv~~g~ltiG~--lva~~~----l~~~~~~pl~~l~~~~~~~ 418 (686)
T TIGR03797 352 LSAQRIENLLTVFNAVLP---VLTSAALFAA----AISLLGGAGLSLGS--FLAFNT----AFGSFSGAVTQLSNTLISI 418 (686)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 544333333222222221 1112222222 2222 124456664 334332 3345567888888899999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCCC
Q 001329 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGS 482 (1099)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sGs 482 (1099)
+++..+.+|+.++++.++|..... . ......+.|+++||+|+|++ ++++|+|+||+|++||++||||||||
T Consensus 419 ~~~~~~~~ri~~~l~~~~e~~~~~-~-------~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGs 490 (686)
T TIGR03797 419 LAVIPLWERAKPILEALPEVDEAK-T-------DPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGS 490 (686)
T ss_pred HHHHHHHHHHHHHhcCCcccccCc-C-------CCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCC
Confidence 999999999999997655432110 0 00112357999999999964 46899999999999999999999999
Q ss_pred chhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHH
Q 001329 483 GKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556 (1099)
Q Consensus 483 GKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~ 556 (1099)
|||||+|+|+|+|+|++|+|.+||.+ .++|++|+||||||++|++||+|||.++.+ .+++++.++++
T Consensus 491 GKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-------~~~e~i~~al~ 563 (686)
T TIGR03797 491 GKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-------LTLDEAWEAAR 563 (686)
T ss_pred CHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-------CCHHHHHHHHH
Confidence 99999999999999999999999975 467899999999999999999999998743 36889999999
Q ss_pred hcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEcc
Q 001329 557 NVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISH 633 (1099)
Q Consensus 557 ~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH 633 (1099)
.++++++++++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||+++|+++++.+++.++|+|+|||
T Consensus 564 ~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItH 643 (686)
T TIGR03797 564 MAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAH 643 (686)
T ss_pred HcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEec
Confidence 99999999999987665 468899999999999999999999999999999999999999999999988899999999
Q ss_pred ChhHHHhcCEEEEEeCC
Q 001329 634 RPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 634 ~l~~i~~~D~Il~l~~~ 650 (1099)
|+++++.+|+|++|+++
T Consensus 644 r~~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 644 RLSTIRNADRIYVLDAG 660 (686)
T ss_pred ChHHHHcCCEEEEEECC
Confidence 99999999999999864
No 19
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.8e-62 Score=599.10 Aligned_cols=524 Identities=23% Similarity=0.297 Sum_probs=390.2
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYI 167 (1099)
Q Consensus 88 l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl 167 (1099)
+++++.+++ ++ . ++..+++.++.+.++...|.+.+.+++.+. .............+++.++..++.....++
T Consensus 4 ~~~l~~~~~-~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 75 (567)
T COG1132 4 LRRLLKYLK-YK-L-----LLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYL 75 (567)
T ss_pred HHHHHHHHH-HH-H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566665 33 2 444555555567788888999999988877 222222222222222222223334444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001329 168 TGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1099)
Q Consensus 168 ~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~ 246 (1099)
..... ..+..++|.++|+++.++|.++|++. .++..+|+++|++.+...+......+...++.. +....+++..
T Consensus 76 ~~~~~----~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 150 (567)
T COG1132 76 GSRLG----QKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLL-IGSLVLLFSL 150 (567)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHH
Confidence 55544 45788899999999999999999875 479999999999998777666533333233222 2233456678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 001329 247 SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1099)
Q Consensus 247 ~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~ 326 (1099)
+|.+++++++.+|+..+...++.++..+.....++..+++.....+...+.+.||.|+.++.+.+++++..++......+
T Consensus 151 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~ 230 (567)
T COG1132 151 SWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230 (567)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888777788888888888888888888889999999999999876665555554443222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRL 406 (1099)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~ 406 (1099)
. ..+.+...++...+.......+++++.+. ...+..++|. +++++ .+...++.++..+......+++.
T Consensus 231 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~--~~~~~----~~~~~~~~~~~~l~~~~~~~~~~ 298 (567)
T COG1132 231 A---SRLEALLAPLMLLLSSLGTVLVLALGGFL---VLSGSLTVGA--LAAFI----LYLLRLLTPILQLGEVVSLLQRA 298 (567)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCCHhH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22222222222212222222222221111 1112234553 33333 23455567888888899999999
Q ss_pred HHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhH
Q 001329 407 SGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486 (1099)
Q Consensus 407 ~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKST 486 (1099)
..+++|++++++.+++..+.... .....+.|+|+||+|.|++++++|+|+||++++||++||||||||||||
T Consensus 299 ~~a~~ri~~~l~~~~~~~~~~~~--------~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKST 370 (567)
T COG1132 299 SAAAERLFELLDEEPEVEDPPDP--------LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKST 370 (567)
T ss_pred HHHHHHHHHHHcCCccccCCCCC--------CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHH
Confidence 99999999999876553321110 1112456999999999987789999999999999999999999999999
Q ss_pred HHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCC
Q 001329 487 LFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 560 (1099)
Q Consensus 487 Ll~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l 560 (1099)
|+++|+|+|+|++|+|.+||+| .++|++|++|||||++|++||+|||.++.+. .+++++.++++.+++
T Consensus 371 l~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~------at~eei~~a~k~a~~ 444 (567)
T COG1132 371 LIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD------ATDEEIEEALKLANA 444 (567)
T ss_pred HHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC------CCHHHHHHHHHHhCh
Confidence 9999999999999999999976 4689999999999999999999999998754 588999999999999
Q ss_pred hhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccCh
Q 001329 561 EYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRP 635 (1099)
Q Consensus 561 ~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l 635 (1099)
++++.++|.++++ +.|.+||||||||++||||++++|+++|||||||+||+++|+.+++.+++ .++|+|+|+||+
T Consensus 445 ~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRl 524 (567)
T COG1132 445 HEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRL 524 (567)
T ss_pred HHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccH
Confidence 9999999976555 36789999999999999999999999999999999999999999998864 478999999999
Q ss_pred hHHHhcCEEEEEeCC
Q 001329 636 ALVAFHDVVLSLDGE 650 (1099)
Q Consensus 636 ~~i~~~D~Il~l~~~ 650 (1099)
++++.||+|++|+++
T Consensus 525 sti~~aD~IiVl~~G 539 (567)
T COG1132 525 STIKNADRIIVLDNG 539 (567)
T ss_pred hHHHhCCEEEEEECC
Confidence 999999999999975
No 20
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3.8e-62 Score=598.24 Aligned_cols=532 Identities=17% Similarity=0.209 Sum_probs=395.7
Q ss_pred chHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 001329 84 GLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHST 163 (1099)
Q Consensus 84 ~~~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 163 (1099)
.|+.++.++++++++++. ++..+++.++..++....+.+.+.+++.+.......+...+ .++++++.++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~---~~~~~~~~l~~~~ 80 (582)
T PRK11176 9 TWQTFRRLWPTIAPFKAG-----LIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWM---PLVVIGLMILRGI 80 (582)
T ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHH---HHHHHHHHHHHHH
Confidence 355567788888888764 33444555555556667788888888877643322221111 1111112223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1099)
Q Consensus 164 ~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L 242 (1099)
..++..++..+....+..+++..+|+++...|.+++++. .++..+|+++|++.+.+.+...+..++..++..+++ ..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~ 159 (582)
T PRK11176 81 TSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGL-FIM 159 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 455555555555556788899999999999999998764 678999999999998777666665555555443333 334
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 001329 243 CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1099)
Q Consensus 243 ~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~ 322 (1099)
+++++|.+++++++.+|+..++..++.++..+...+.++..+++.....+...++++||.|+.|+.+.+++++..++..+
T Consensus 160 l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~ 239 (582)
T PRK11176 160 MFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQ 239 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 55679999988888777777777778888888888888888888888888888999999999999998888887777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSR 401 (1099)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~ 401 (1099)
...+..+...+...+..++. .....++++ +++.. ..+..++|.. ++.+ .++..++.|+..+...+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~----~g~~~~~~g~is~g~~--~~~~----~~~~~~~~pl~~l~~~~~ 306 (582)
T PRK11176 240 QGMKMVSASSISDPIIQLIA---SLALAFVLY----AASFPSVMDTLTAGTI--TVVF----SSMIALMRPLKSLTNVNA 306 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHHHH--HHHH----HHHHHHHHHHHHHHHHHH
Confidence 55444333222222222221 111111222 11211 2234466643 2222 223445678888888999
Q ss_pred HHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCC
Q 001329 402 RLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPN 480 (1099)
Q Consensus 402 ~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~s 480 (1099)
.+++...+.+|+.++++.+++..... . ...+..+.|+++||+|.|+++ +++|+|+||+|++||+++|+|||
T Consensus 307 ~~~~~~~~~~ri~~~~~~~~~~~~~~--~------~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~s 378 (582)
T PRK11176 307 QFQRGMAACQTLFAILDLEQEKDEGK--R------VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRS 378 (582)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCCCC--c------CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCC
Confidence 99999999999999987554321100 0 001123469999999999764 68999999999999999999999
Q ss_pred CCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHH
Q 001329 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1099)
Q Consensus 481 GsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~ 554 (1099)
|||||||+++|+|+++|++|+|.+||.+ .++++.|+||||||++|++||+|||.++.+. ..+++++.++
T Consensus 379 GsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~-----~~~~~~i~~a 453 (582)
T PRK11176 379 GSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE-----QYSREQIEEA 453 (582)
T ss_pred CCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC-----CCCHHHHHHH
Confidence 9999999999999999999999999975 3568899999999999999999999987532 2578999999
Q ss_pred HHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEE
Q 001329 555 LKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1099)
Q Consensus 555 l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI 629 (1099)
++.+|++++++++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||++++..+++.+.+ .++|+|
T Consensus 454 l~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI 533 (582)
T PRK11176 454 ARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSL 533 (582)
T ss_pred HHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999986655 46889999999999999999999999999999999999999999998876 479999
Q ss_pred EEccChhHHHhcCEEEEEeCC
Q 001329 630 TISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 630 ~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+||||++.++.||+|++|+++
T Consensus 534 ~VtHr~~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 534 VIAHRLSTIEKADEILVVEDG 554 (582)
T ss_pred EEecchHHHHhCCEEEEEECC
Confidence 999999999999999999864
No 21
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.5e-61 Score=594.00 Aligned_cols=533 Identities=17% Similarity=0.164 Sum_probs=391.1
Q ss_pred ccchHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Q 001329 82 KGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMH 161 (1099)
Q Consensus 82 ~~~~~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~ 161 (1099)
++-|+.+++++++.+++++. ++..+++.++.+.+....|.+.+.++|.+........ ..++..+++.++..++.
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (592)
T PRK10790 5 SQLWPTLKRLLAYGSPWRKP-----LGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLA 78 (592)
T ss_pred hhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHH
Confidence 34466677788888877764 4455566666677777889999999998764322111 11111112222223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 162 STSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240 (1099)
Q Consensus 162 ~~~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~ 240 (1099)
.+..|+..++..+...++..+++.++|+++...|.++|++. .++..+|+++|++.+...+...+..++..++..++ ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~-~~ 157 (592)
T PRK10790 79 AGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGA-ML 157 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 45667777777777777888999999999999999999765 56889999999999887776666555555433222 23
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 001329 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKAL 320 (1099)
Q Consensus 241 ~L~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l 320 (1099)
.++++++|.+++++++.+|+..++..++.+...+...+.++..++......+...++++||.|+.|+.+.+++.+..++.
T Consensus 158 ~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~ 237 (592)
T PRK10790 158 VAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSH 237 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34556799988887776666655555555666666666666666777778888889999999999998887777666554
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 321 TRHMRVVLHDH-WWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSIS 399 (1099)
Q Consensus 321 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~ 399 (1099)
.+...+..+.. .....+..++..+. .++++++ .+....+..++|. +++++ .+...+..|+..+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~g~is~g~--l~a~~----~~~~~~~~pl~~l~~~ 304 (592)
T PRK10790 238 YMARMQTLRLDGFLLRPLLSLFSALI--LCGLLML-----FGFSASGTIEVGV--LYAFI----SYLGRLNEPLIELTTQ 304 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-----HHHHHCCCcCHHH--HHHHH----HHHHHHHHHHHHHHHH
Confidence 44322222111 11111111111111 0111111 1112233445553 33332 2334556788888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcC
Q 001329 400 SRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479 (1099)
Q Consensus 400 ~~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~ 479 (1099)
+..+++...+++|+.++++.+++... . . ......+.|+++||+|.|++++++|+|+||++++||+++|+|+
T Consensus 305 ~~~~~~~~~s~~ri~~~l~~~~~~~~-~-~-------~~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~ 375 (592)
T PRK10790 305 QSMLQQAVVAGERVFELMDGPRQQYG-N-D-------DRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGH 375 (592)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCC-C-C-------ccCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECC
Confidence 99999999999999999875433110 0 0 0011235699999999998667899999999999999999999
Q ss_pred CCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHH
Q 001329 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE 553 (1099)
Q Consensus 480 sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~ 553 (1099)
||||||||+++|+|+|+|++|+|.+||.+ +++|++|+||||||++|++||+|||.++. . .+++++.+
T Consensus 376 SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~------~~d~~i~~ 448 (592)
T PRK10790 376 TGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-D------ISEEQVWQ 448 (592)
T ss_pred CCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-C------CCHHHHHH
Confidence 99999999999999999999999999975 36789999999999999999999999974 1 47889999
Q ss_pred HHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEE
Q 001329 554 LLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSC 628 (1099)
Q Consensus 554 ~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~Tv 628 (1099)
+++.+|++++++++|.+.++ +.|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .++|+
T Consensus 449 a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tv 528 (592)
T PRK10790 449 ALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTL 528 (592)
T ss_pred HHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999986665 35789999999999999999999999999999999999999999998876 37999
Q ss_pred EEEccChhHHHhcCEEEEEeCC
Q 001329 629 ITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 629 I~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|+||||++.++.+|+|++|+++
T Consensus 529 IivtHr~~~l~~~D~ii~l~~G 550 (592)
T PRK10790 529 VVIAHRLSTIVEADTILVLHRG 550 (592)
T ss_pred EEEecchHHHHhCCEEEEEECC
Confidence 9999999999999999999864
No 22
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=100.00 E-value=2e-63 Score=560.08 Aligned_cols=578 Identities=34% Similarity=0.582 Sum_probs=481.0
Q ss_pred cccccccchHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 001329 77 KANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFL 156 (1099)
Q Consensus 77 ~~~~~~~~~~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~ 156 (1099)
+.+.|+..++.+..|.+++.|...+.+.+++.+-.++++.+|+++..++.+.|.++..++.++...|.+.++.|+++.+.
T Consensus 90 e~~~N~~f~k~l~~L~Kilip~vfc~e~gll~~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~liaiP 169 (728)
T KOG0064|consen 90 EPAKNSQFLKRLNVLSKILIPTVFCKETGLLTAQSFFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFLIAIP 169 (728)
T ss_pred ccccCHHHHHHHHHHHHHhcchHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHhhhcc
Confidence 44445555677999999999999999998899999999999999999999999999999999988898888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 157 LSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGL 236 (1099)
Q Consensus 157 ~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i 236 (1099)
++++++..+|+...++..+|.+++++..+.||++..||.+++.|+++.|+|+++|+||..|+..+..++.++..++++.+
T Consensus 170 AtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~ 249 (728)
T KOG0064|consen 170 ASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLI 249 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHh-hhhHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Q 001329 237 LYTWRLCSYA-SPKYV--FWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHI 313 (1099)
Q Consensus 237 ~~~~~L~~~~-~~~l~--l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l 313 (1099)
++++.|+-.. +.+.. ..+.+.+.+.+.+.+.++|+++++..++....+.+|..|+++.+|.|.|++|++.+.|.+.+
T Consensus 250 l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql 329 (728)
T KOG0064|consen 250 LISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQV 329 (728)
T ss_pred HHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHH
Confidence 8776665321 11111 12223334556678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCC-c---cchhHHHHHHHHHHHHHHHHHH
Q 001329 314 QQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPD-T---STLGRAKMLSNLRYHTSVIISL 389 (1099)
Q Consensus 314 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~-~---~tlG~~~l~a~l~~~~~~i~~~ 389 (1099)
++.|+.+...+....+...|+.+...++.+|.+...+++++..|.+.+....+ . ...|. .....+.-.-..+.+.
T Consensus 330 ~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~-srt~~f~t~r~LL~sa 408 (728)
T KOG0064|consen 330 DESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGN-SRTKEFITNRRLLLSA 408 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccch-hHHHHHHHHHHHHHHH
Confidence 99999999998888888899999999999998888777777767655444221 1 11111 0111111122345667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccC---C-CCCC----------CCCC----CCCcCCCCcEEEEeeE
Q 001329 390 FQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIE---D-KSPQ----------RNGS----RNYFSEANYIEFSGVK 451 (1099)
Q Consensus 390 ~~~l~~l~~~~~~l~~~~~~~~Ri~ell~~~~e~~~~---~-~~~~----------~~~~----~~~~~~~~~I~~~~v~ 451 (1099)
..++..++.++.+++++.++..|+++.++.-.+.... . ...+ .++. .........|.++|+.
T Consensus 409 AdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIp 488 (728)
T KOG0064|consen 409 ADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIP 488 (728)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCc
Confidence 7889999999999999999999999876543322110 0 0000 0000 0001123459999999
Q ss_pred EEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHH
Q 001329 452 VVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRD 531 (1099)
Q Consensus 452 ~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~e 531 (1099)
+-.|.+..++..+||+|++|-.+.|+||||||||+|+|+|.|+||...|...++.. .+|.|+||.||+..||+||
T Consensus 489 vItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~-----~~mFYIPQRPYms~gtlRD 563 (728)
T KOG0064|consen 489 VITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRP-----NNIFYIPQRPYMSGGTLRD 563 (728)
T ss_pred eeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCC-----cceEeccCCCccCcCcccc
Confidence 99998889999999999999999999999999999999999999999999988763 4699999999999999999
Q ss_pred HhccCCCCCCcC-CcCCHHHHHHHHHhcCChhHHhcCC-CCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 001329 532 QLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609 (1099)
Q Consensus 532 ni~~~~~~~~~~-~~~~~~~i~~~l~~~~l~~~~~~~p-~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaL 609 (1099)
+|.||....+.. ....|.++..+|+.+.|++.+++-. .+...+|-+.||||||||+++||.++|+|+..+|||+|||+
T Consensus 564 QIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAv 643 (728)
T KOG0064|consen 564 QIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAV 643 (728)
T ss_pred eeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhccc
Confidence 999998754322 3468899999999999999988854 24445798999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEeCCCceEEeecCC
Q 001329 610 TTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRD 660 (1099)
Q Consensus 610 D~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~~~~~~~~ 660 (1099)
.++.|..++++.+..|.+.|.||||+++.+++.+.+..|++|+|.+..-++
T Consensus 644 sidvE~~i~~~ak~~gi~llsithrpslwk~h~~ll~~dg~g~~q~~~ln~ 694 (728)
T KOG0064|consen 644 SIDVEGKIFQAAKDAGISLLSITHRPSLWKYHTHLLEFDGEGGWQFRALNT 694 (728)
T ss_pred ccchHHHHHHHHHhcCceEEEeecCccHHHHHHHHHhccCCCCeeeccCCh
Confidence 999999999999999999999999999999999999999999999875444
No 23
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-61 Score=552.86 Aligned_cols=526 Identities=21% Similarity=0.245 Sum_probs=387.3
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 001329 91 LAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFL---LSTMHSTSKYI 167 (1099)
Q Consensus 91 Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~---~~~~~~~~~yl 167 (1099)
+.+++++|++. .. .+.+.+++.++....+..+-.++|||+.+....+... +..+++-... ..+.....+|.
T Consensus 4 l~p~i~l~~~~-~~-~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~----~f~~~~p~a~VR~~aI~Rt~~RY~ 77 (573)
T COG4987 4 LLPYLRLYKRH-KF-GLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAY----IFNVMLPSAGVRGLAILRTAARYV 77 (573)
T ss_pred chHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888772 22 4566666666666777789999999998877665421 1111111111 22335678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001329 168 TGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1099)
Q Consensus 168 ~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~-~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~ 246 (1099)
....+-++-=++..++|.+.|+++.-.+...... +.+++.+|++.||+.+.+.+...+.+.+.+++...+..+. ..++
T Consensus 78 ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~-L~f~ 156 (573)
T COG4987 78 ERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIG-LSFF 156 (573)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHH-HHHh
Confidence 8888888777788999999999998777655543 5789999999999999999988888887776544333333 3457
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 001329 247 SPKYVFWILAYVLGAGTMMRNFSPAF-GKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1099)
Q Consensus 247 ~~~l~l~il~~~~~~~~i~~~~~~~~-~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~ 325 (1099)
+|.+++.+.+++.+..++++++..+. ++..+...+..+.+++.......+.....+||+++...+.+++.-+...+..+
T Consensus 157 ~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~ 236 (573)
T COG4987 157 SIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQR 236 (573)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 88888887766666666666655443 34556666677777876655555666678999999987766665555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 001329 326 VVLHDHWWFGMIQDFLLKYLGATVA-VILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLS-ISSRRL 403 (1099)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~-~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~-~~~~~l 403 (1099)
+..+...+.+.+..++ .+..+. .++ |+++....|..+.- ...+.. ..++..+.++..+. .....+
T Consensus 237 k~~~~~~~~~a~~~l~---~g~~v~~~l~----w~a~~~~~G~~~~~-~aa~~l-----l~~f~~~eaf~~L~~~A~~~l 303 (573)
T COG4987 237 KQARFTGLSDAILLLI---AGLLVIGLLL----WMAAQVGAGALAQP-GAALAL-----LVIFAALEAFEPLAPGAFQHL 303 (573)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHH----HHHhcCcCCCcchh-HHHHHH-----HHHHHHHHHHhhhcchhHHHh
Confidence 4333333333322222 111111 122 23333333322211 111111 12234445555555 666889
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCCC-ceeeeeeEEEeCCCEEEEEcCCCC
Q 001329 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGN-VLVENLTLKVEPGSNLLITGPNGS 482 (1099)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~-~vL~~vsl~i~~Ge~vaIvG~sGs 482 (1099)
.+...++.|+.++.+.+++...++... ......++++||+|+|++.+ ++|+|+||++++||++||+|+|||
T Consensus 304 gq~~~Sa~Rl~~i~~q~~e~~~~~~~~--------~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGs 375 (573)
T COG4987 304 GQVIASARRLNDILDQKPEVTFPDEQT--------ATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGS 375 (573)
T ss_pred hHHHHHHHHHhhhccCCcccCCCcccc--------CCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCC
Confidence 999999999999988777654321110 11122799999999999765 899999999999999999999999
Q ss_pred chhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHH
Q 001329 483 GKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556 (1099)
Q Consensus 483 GKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~ 556 (1099)
|||||+++|+|.|+|++|+|.++|.+ +++|+.|++++|++++|.+|++||+..+.+. ++||+++++++
T Consensus 376 GKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~------AsDEel~~aL~ 449 (573)
T COG4987 376 GKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPD------ASDEELWAALQ 449 (573)
T ss_pred CHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCC------CCHHHHHHHHH
Confidence 99999999999999999999999976 3478899999999999999999999987654 68999999999
Q ss_pred hcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEE
Q 001329 557 NVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITI 631 (1099)
Q Consensus 557 ~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~I 631 (1099)
++||+++++..|.+..+ +.|..||||||||++|||+|++|.+++||||||.|||+.||+++++.+.+ .|+|+|+|
T Consensus 450 qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~v 529 (573)
T COG4987 450 QVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMV 529 (573)
T ss_pred HcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEE
Confidence 99999999999876554 46889999999999999999999999999999999999999999999876 49999999
Q ss_pred ccChhHHHhcCEEEEEeCC
Q 001329 632 SHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 632 tH~l~~i~~~D~Il~l~~~ 650 (1099)
|||+..++.+|+|++|+++
T Consensus 530 THrL~~le~~drIivl~~G 548 (573)
T COG4987 530 THRLRGLERMDRIIVLDNG 548 (573)
T ss_pred ecccccHhhcCEEEEEECC
Confidence 9999999999999999975
No 24
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=5e-61 Score=581.92 Aligned_cols=511 Identities=19% Similarity=0.210 Sum_probs=379.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTR 186 (1099)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~ 186 (1099)
++..+++.++...+++..|.+.++++|.+...+.. . ..+....++++++.++..+..|+..++..++...+..++|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 82 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGEP-L-AELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRER 82 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677788889999999999987522111 1 111112222222233344556666777777777788899999
Q ss_pred HHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001329 187 YFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMM 265 (1099)
Q Consensus 187 ~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~~l~l~il~~~~~~~~i~ 265 (1099)
+|+++.+.|..+|++. .++..+|+++|++.+.+.+...+...+..++..+++ ..++++++|.+++++++.+|+..++.
T Consensus 83 l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 83 LLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAI-LAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999764 668999999999998776665555544444333222 23455679998888877777666666
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 266 RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345 (1099)
Q Consensus 266 ~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1099)
.++.++..+...+.++..+++.....+..+++++||.|+.|+.+.+++++..++..+...+..+.......+..++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 239 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT-- 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 667777777777777788888888888888999999999999998887777766665443332222222222222111
Q ss_pred HHHHHHHHhhhhhhccc-ccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcc
Q 001329 346 GATVAVILIIEPFFAGN-LKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELS 424 (1099)
Q Consensus 346 ~~~~~~il~~~~~~~g~-l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~~~~Ri~ell~~~~e~~ 424 (1099)
....++++ ++|. ...+..++|. +++++. +...++.|+..+...+..+++...+++|+.++++.+++..
T Consensus 240 -~~~~~~~~----~~~~~~~~g~~t~g~--~~~~~~----~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~ 308 (529)
T TIGR02857 240 -LSVALVAV----YIGFRLLAGDLDLAT--GLFVLL----LAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA 308 (529)
T ss_pred -HHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 11111111 1111 1123446653 333322 2344557777888888999999999999999987432211
Q ss_pred cCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEE
Q 001329 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503 (1099)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~ 503 (1099)
. . . . .. ....+.|+++||+|.|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.
T Consensus 309 ~-~-~-~----~~-~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~ 380 (529)
T TIGR02857 309 G-K-A-P----VT-AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380 (529)
T ss_pred C-C-c-C----CC-CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 0 0 0 0 00 0112469999999999865 4799999999999999999999999999999999999999999999
Q ss_pred eCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---C
Q 001329 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---N 574 (1099)
Q Consensus 504 i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~ 574 (1099)
+||.+ +++|++++||||+|++|++||+|||.++.+. .+++++.++++.++++++++++|.+.++ +
T Consensus 381 ~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~------~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e 454 (529)
T TIGR02857 381 VNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPD------ASDAEIRRALERAGLDEFVAALPQGLDTLIGE 454 (529)
T ss_pred ECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCC------CCHHHHHHHHHHcCcHHHHHhCcccccchhcc
Confidence 99975 4578899999999999999999999987532 4678999999999999999999976554 3
Q ss_pred CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEE
Q 001329 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSL 647 (1099)
Q Consensus 575 ~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l 647 (1099)
+|.+||||||||++||||++++|+++|||||||+||+++++++++.+++ .++|+|+||||+++++.||+|++|
T Consensus 455 ~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 6889999999999999999999999999999999999999999998876 489999999999999999999975
No 25
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=6.6e-61 Score=587.75 Aligned_cols=528 Identities=17% Similarity=0.172 Sum_probs=388.2
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSK 165 (1099)
Q Consensus 86 ~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1099)
+.++++++++++++.. +...+++.++...+++..|.+.+.++|.+.... .+...++ +++++.++..+..
T Consensus 5 ~~~~~l~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--~~~~~~~----~~~~~~~~~~~~~ 73 (588)
T PRK13657 5 RLYARVLQYLGAEKRL-----GILLAVANVLLAAATFAEPILFGRIIDAISGKG--DIFPLLA----AWAGFGLFNIIAG 73 (588)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cHHHHHH----HHHHHHHHHHHHH
Confidence 4567777787777663 455666666667788888999999999876432 1211111 1111122223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1099)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~ 244 (1099)
++...+..+....+..+++.++|+++.+.|..++++. .++..+|+++|++.+...+...+...+..++..++ .+.+++
T Consensus 74 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 152 (588)
T PRK13657 74 VLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVV-LLPLAL 152 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5555555555555666677899999999999998764 56899999999999876666666655555443322 233456
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001329 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1099)
Q Consensus 245 ~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1099)
+++|.+++++++.+++..++...+.++..+...+.++..+++.....+...+++.||.|+.++.+.+++.+..++..+..
T Consensus 153 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
T PRK13657 153 FMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQ 232 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 67999888888777777777777777877777777777788888888888899999999999999888888777776654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1099)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l 403 (1099)
.+..+..........++. .....++++ +++.. ..+..++|. +++.+. ++..++.++..+...+..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~g~~~v~~g~lt~g~--~~a~~~----l~~~~~~~l~~l~~~~~~~ 299 (588)
T PRK13657 233 MPVLSWWALASVLNRAAS---TITMLAILV----LGAALVQKGQLRVGE--VVAFVG----FATLLIGRLDQVVAFINQV 299 (588)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCcCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 433322222222222211 111111111 11111 123446664 333322 2345567777888888888
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCc
Q 001329 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSG 483 (1099)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsG 483 (1099)
.....+.+|+.++++.+++....... .......+.|+++||+|.|++++++|+|+||++++||+++|+||||||
T Consensus 300 ~~~~~~~~~i~~l~~~~~~~~~~~~~------~~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsG 373 (588)
T PRK13657 300 FMAAPKLEEFFEVEDAVPDVRDPPGA------IDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAG 373 (588)
T ss_pred HHHHHHHHHHHHHhCCCcccCCCCCC------CCcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCC
Confidence 88999999999988754332110000 000112346999999999986567999999999999999999999999
Q ss_pred hhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHh
Q 001329 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1099)
Q Consensus 484 KSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~ 557 (1099)
||||+|+|+|+|+|++|+|.+||.+ .++|++|+||||+|++|++|++|||.++.+. .+++++.++++.
T Consensus 374 KSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~------~~d~~i~~al~~ 447 (588)
T PRK13657 374 KSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD------ATDEEMRAAAER 447 (588)
T ss_pred HHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCC------CCHHHHHHHHHH
Confidence 9999999999999999999999975 3578899999999999999999999997532 468899999999
Q ss_pred cCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEc
Q 001329 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITIS 632 (1099)
Q Consensus 558 ~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~It 632 (1099)
++++++++++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||+++++.+++.+++ .++|+|+||
T Consensus 448 ~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiit 527 (588)
T PRK13657 448 AQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIA 527 (588)
T ss_pred hCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 9999999999976554 46789999999999999999999999999999999999999999998876 489999999
Q ss_pred cChhHHHhcCEEEEEeCC
Q 001329 633 HRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 633 H~l~~i~~~D~Il~l~~~ 650 (1099)
||++.++.+|+|++|+++
T Consensus 528 Hr~~~~~~~D~ii~l~~G 545 (588)
T PRK13657 528 HRLSTVRNADRILVFDNG 545 (588)
T ss_pred ecHHHHHhCCEEEEEECC
Confidence 999999999999999874
No 26
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=8.1e-61 Score=585.21 Aligned_cols=527 Identities=19% Similarity=0.232 Sum_probs=398.8
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 89 QVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYIT 168 (1099)
Q Consensus 89 ~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~ 168 (1099)
+.++++++++++. ++..+++.++...+....+.+.+.+++......... .+....++++++.++..+..|+.
T Consensus 3 ~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~ 74 (571)
T TIGR02203 3 RRLWSYVRPYKAG-----LVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRS---VLWWVPLVVIGLAVLRGICSFVS 74 (571)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677776653 555555666666777778888888888766433211 11111212222233345566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001329 169 GTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247 (1099)
Q Consensus 169 ~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~ 247 (1099)
.++..+....+...+++.+|+++...|.+++++. .++..+|+++|++.+.+.+...+...+..++..++ ...++++++
T Consensus 75 ~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~ 153 (571)
T TIGR02203 75 TYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIG-LFIVLLYYS 153 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 7777777777888999999999999999988764 56899999999999887776666555555443333 334556789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Q 001329 248 PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVV 327 (1099)
Q Consensus 248 ~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~ 327 (1099)
|.+++++++..|+.+++..++.++..+...+.++..+++.....+...++++||.++.++.+.+++++.+++..+...+.
T Consensus 154 ~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (571)
T TIGR02203 154 WQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKM 233 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888888898888888888888989999999999999999999999888888777766654443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 328 LHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRL 406 (1099)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~ 406 (1099)
.+.......+..++. .....+++++ ++.. ..+..+.|. ++++. .++..++.|+..+...+..++++
T Consensus 234 ~~~~~~~~~~~~~~~---~~~~~~~~~~----g~~~~~~g~lt~g~--l~a~~----~~~~~~~~pl~~l~~~~~~~~~~ 300 (571)
T TIGR02203 234 TSAGSISSPITQLIA---SLALAVVLFI----ALFQAQAGSLTAGD--FTAFI----TAMIALIRPLKSLTNVNAPMQRG 300 (571)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHcCCCCHhH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222222222211 1111122221 1111 123446654 33332 23455668888889999999999
Q ss_pred HHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCCCchh
Q 001329 407 SGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKS 485 (1099)
Q Consensus 407 ~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sGsGKS 485 (1099)
..+.+|+.++++.+++.+... . ......+.|+++||+|+|++ ++++|+|+||++++||+++|+|+||||||
T Consensus 301 ~~~~~ri~~~l~~~~~~~~~~--~------~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKS 372 (571)
T TIGR02203 301 LAAAESLFTLLDSPPEKDTGT--R------AIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKS 372 (571)
T ss_pred HHHHHHHHHHHcCCCCCCCCC--C------CCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHH
Confidence 999999999987654422110 0 00112346999999999975 46799999999999999999999999999
Q ss_pred HHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcC
Q 001329 486 SLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD 559 (1099)
Q Consensus 486 TLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~ 559 (1099)
||+++|+|+++|++|+|.+||.+ ++++++++||||+|++|++|++|||.++.+. +.+++++.++++.+|
T Consensus 373 TLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~-----~~~~~~i~~~l~~~~ 447 (571)
T TIGR02203 373 TLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE-----QADRAEIERALAAAY 447 (571)
T ss_pred HHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC-----CCCHHHHHHHHHHcC
Confidence 99999999999999999999975 4578899999999999999999999987531 257889999999999
Q ss_pred ChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccC
Q 001329 560 LEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHR 634 (1099)
Q Consensus 560 l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~ 634 (1099)
++++++++|.+.++ ++|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++. ++|+|+||||
T Consensus 448 l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~ 527 (571)
T TIGR02203 448 AQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHR 527 (571)
T ss_pred hHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 99999999976554 468899999999999999999999999999999999999999999988763 8999999999
Q ss_pred hhHHHhcCEEEEEeCC
Q 001329 635 PALVAFHDVVLSLDGE 650 (1099)
Q Consensus 635 l~~i~~~D~Il~l~~~ 650 (1099)
++.++.||+|++++++
T Consensus 528 ~~~~~~~D~ii~l~~g 543 (571)
T TIGR02203 528 LSTIEKADRIVVMDDG 543 (571)
T ss_pred hHHHHhCCEEEEEeCC
Confidence 9999999999999863
No 27
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.5e-60 Score=581.31 Aligned_cols=527 Identities=16% Similarity=0.148 Sum_probs=396.6
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1099)
Q Consensus 87 ~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1099)
.+++++++++++++. ++..+++.++.+.+.+..|++.++++|.+..+.. ... .+++.++..++.++..|
T Consensus 6 ~~~~l~~~l~~~k~~-----~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~--~~~----~~~~~~~~~~~~~~~~~ 74 (585)
T TIGR01192 6 VYVRALSYLNVHKNR-----VLLIVIANITLAAITIAEPILFGRIIDAISSKSD--VLP----TLALWAGFGVFNTIAYV 74 (585)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHH----HHHHHHHHHHHHHHHHH
Confidence 467788888888874 5556666677778888999999999998764321 111 11111122333455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1099)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~ 245 (1099)
+..++..++...+..+++.++|+++.++|+++|+++ .++..+|+++|++.+...+...+...+..++..+++ ..++++
T Consensus 75 ~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 153 (585)
T TIGR01192 75 LVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLL-IPTAFA 153 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 777777777777888888999999999999999764 679999999999998877776666665555433332 234566
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 001329 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1099)
Q Consensus 246 ~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~ 325 (1099)
++|.+++++++.+|+..++..++.++..+...+.++..+++.....+..+++++||.|+.|+.+.+++++..++..+...
T Consensus 154 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 233 (585)
T TIGR01192 154 MDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQY 233 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 89999999888888877777888888877777777777778888888888999999999999998887777776655433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1099)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~ 404 (1099)
+..+. .+....+...+......++++ +++.+ ..+..++|. +++++.+ ...++.++..+...+..+.
T Consensus 234 ~~~~~---~~~~~~~~~~~~~~~~~~v~~----~g~~~v~~g~it~g~--l~a~~~~----~~~l~~~~~~l~~~~~~~~ 300 (585)
T TIGR01192 234 PVLDW---WALASGLNRMASTISMMCILV----IGTVLVIKGELSVGE--VIAFIGF----ANLLIGRLDQMSGFITQIF 300 (585)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 32222 222222111111111122222 22222 133446653 3333322 3345567777888888899
Q ss_pred HHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCch
Q 001329 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGK 484 (1099)
Q Consensus 405 ~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGK 484 (1099)
.+..+.+|+.++++.+++........ ......+.++++||+|.|++++++++|+||++++||+++|+|||||||
T Consensus 301 ~~~~~~~ri~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGK 374 (585)
T TIGR01192 301 EARAKLEDFFDLEDSVFQREEPADAP------ELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGK 374 (585)
T ss_pred HHHHHHHHHHHHHcCCccccCCccCC------CCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCH
Confidence 99999999999987654322111000 001123469999999999866679999999999999999999999999
Q ss_pred hHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhc
Q 001329 485 SSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558 (1099)
Q Consensus 485 STLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~ 558 (1099)
|||+++|+|+++|++|+|.+||.+ .++|+.++||||+|++|++|++|||.++.+. .+++++.++++.+
T Consensus 375 STL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~------~~~~~~~~a~~~~ 448 (585)
T TIGR01192 375 TTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG------ATDEEVYEAAKAA 448 (585)
T ss_pred HHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC------CCHHHHHHHHHHh
Confidence 999999999999999999999975 3567899999999999999999999987532 4678899999999
Q ss_pred CChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEcc
Q 001329 559 DLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISH 633 (1099)
Q Consensus 559 ~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH 633 (1099)
++++++.++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .++|+|+|||
T Consensus 449 ~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH 528 (585)
T TIGR01192 449 AAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAH 528 (585)
T ss_pred CcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 999999998875543 46789999999999999999999999999999999999999999998875 3899999999
Q ss_pred ChhHHHhcCEEEEEeCC
Q 001329 634 RPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 634 ~l~~i~~~D~Il~l~~~ 650 (1099)
|++.+..+|+|++|+++
T Consensus 529 ~~~~~~~~d~i~~l~~G 545 (585)
T TIGR01192 529 RLSTVRNADLVLFLDQG 545 (585)
T ss_pred ChHHHHcCCEEEEEECC
Confidence 99999999999999875
No 28
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.6e-60 Score=594.59 Aligned_cols=527 Identities=16% Similarity=0.187 Sum_probs=397.4
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHSTSK 165 (1099)
Q Consensus 87 ~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1099)
.+.+++++++++++. +...++++++...+++..|.+.+.++|.+.... ...++. ..+.++++.++..+..
T Consensus 126 ~~~~~~~~~~~~~~~-----~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~----l~~~~~~~~~~~~~~~ 196 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQ-----FREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSV----LALAMLAVAIFEPALG 196 (694)
T ss_pred cHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHH----HHHHHHHHHHHHHHHH
Confidence 366777788887764 445555556666777888999999999876432 222221 1111222223344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1099)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~ 244 (1099)
++..++..+...++..+++.++|+++.+.|+++|+++ .++..+|+ +|++.+.+.+...+...+..++..+++ ..+++
T Consensus 197 ~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~ 274 (694)
T TIGR01846 197 GLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVF-LAVMF 274 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 6666666666777888999999999999999999765 66889998 699988776655444444333323333 23556
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001329 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1099)
Q Consensus 245 ~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1099)
+++|.+++++++.+|+..++..++.+++++...+..+..++......+...++++||.++.|+.+.+++++.+++..+..
T Consensus 275 ~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~ 354 (694)
T TIGR01846 275 FYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAAS 354 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHH
Confidence 78999999888877877777777888888887777777778888888888899999999999999988888888776654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1099)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l 403 (1099)
.+..+.......+..++. ....+++++ +++.+ ..+..|+|. ++++. .....++.|+..+...+.++
T Consensus 355 ~~~~~~~~~~~~~~~~i~---~~~~~~il~----~g~~lv~~g~it~G~--lia~~----~l~~~~~~pl~~l~~~~~~~ 421 (694)
T TIGR01846 355 FRVTNLGNIAGQAIELIQ---KLTFAILLW----FGAHLVIGGALSPGQ--LVAFN----MLAGRVTQPVLRLAQLWQDF 421 (694)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHhHH----HHHHHHHcCCCCHHH--HHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 443332222222222221 111122222 22222 134456664 33332 23455668888888999999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCC
Q 001329 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGS 482 (1099)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGs 482 (1099)
+++..+.+|+.++++.+++..... . .......+.|+++||+|.|+++ +++|+|+||+|++||+++|+|+|||
T Consensus 422 ~~~~~~~~ri~~~l~~~~e~~~~~-~------~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGs 494 (694)
T TIGR01846 422 QQTGIALERLGDILNSPTEPRSAG-L------AALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGS 494 (694)
T ss_pred HHHHHHHHHHHHHHcCCCCccCCC-C------CCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCC
Confidence 999999999999997665432110 0 0011123579999999999754 5799999999999999999999999
Q ss_pred chhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHH
Q 001329 483 GKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556 (1099)
Q Consensus 483 GKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~ 556 (1099)
|||||+|+|+|+++|++|+|.+||.+ .++|++|+||||+|++|++|++|||.++.+. .+++++.++++
T Consensus 495 GKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~------~~~~~i~~a~~ 568 (694)
T TIGR01846 495 GKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG------APFEHVIHAAK 568 (694)
T ss_pred CHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCC------CCHHHHHHHHH
Confidence 99999999999999999999999975 3678899999999999999999999986532 57889999999
Q ss_pred hcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEE
Q 001329 557 NVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITI 631 (1099)
Q Consensus 557 ~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~I 631 (1099)
.++++++++++|.+.++ +.|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+|
T Consensus 569 ~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~i 648 (694)
T TIGR01846 569 LAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIII 648 (694)
T ss_pred HcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999986654 35789999999999999999999999999999999999999999998876 48999999
Q ss_pred ccChhHHHhcCEEEEEeCC
Q 001329 632 SHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 632 tH~l~~i~~~D~Il~l~~~ 650 (1099)
|||+++++.+|+|++|+++
T Consensus 649 tH~~~~~~~~d~ii~l~~G 667 (694)
T TIGR01846 649 AHRLSTVRACDRIIVLEKG 667 (694)
T ss_pred eCChHHHHhCCEEEEEeCC
Confidence 9999999999999999874
No 29
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.5e-61 Score=630.95 Aligned_cols=531 Identities=18% Similarity=0.182 Sum_probs=369.9
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1099)
Q Consensus 87 ~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1099)
.+.++++.++||++. +++.++++++...+...+|.+.+.+++.++.... .......+.++++++.++..+..+
T Consensus 812 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~l~~~~~~i~~~~~~~ 884 (1466)
T PTZ00265 812 NLRIVYREIFSYKKD-----VTIIALSILVAGGLYPVFALLYAKYVSTLFDFAN--LEANSNKYSLYILVIAIAMFISET 884 (1466)
T ss_pred hHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888774 4444445555566777888888888887653211 000011111122222222233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC---CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG---RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1099)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~---~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~ 243 (1099)
+..++..+.-.++..++|.++|++++++|++||++ .+++..+|+++|++.+...+...+..++..++.. ++...++
T Consensus 885 l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~-i~~~~~~ 963 (1466)
T PTZ00265 885 LKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLF-LVSMVMS 963 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 44444444444477889999999999999999974 3568899999999998876665555555444432 2333455
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001329 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLM-SK-----------------EQQLEGEYRQLHSRLRTHAESIAFYGG 305 (1099)
Q Consensus 244 ~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~-~~-----------------~q~~~a~~r~~~~~~~~~~e~Ik~~~~ 305 (1099)
++++|.+++++++.+++ +...+.++.+... .+ .++..++......+...++++|++|+.
T Consensus 964 ~~~~~~l~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~ 1040 (1466)
T PTZ00265 964 FYFCPIVAAVLTGTYFI---FMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGL 1040 (1466)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcc
Confidence 67788887765543332 2333333322211 11 122244556677788889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHH
Q 001329 306 ENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTS 384 (1099)
Q Consensus 306 e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~ 384 (1099)
|+.+.+++.+..++..+...+ .....++...+...+...+.+++++ +++.+. .+..++|. +++++.+
T Consensus 1041 e~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~G~~lv~~g~it~g~--l~~~~~~--- 1108 (1466)
T PTZ00265 1041 EDYFCNLIEKAIDYSNKGQKR---KTLVNSMLWGFSQSAQLFINSFAYW----FGSFLIRRGTILVDD--FMKSLFT--- 1108 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHHH---
Confidence 999987776666555443322 2233333333322222222233333 333332 23445553 3333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCC--CCceee
Q 001329 385 VIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVE 462 (1099)
Q Consensus 385 ~i~~~~~~l~~l~~~~~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~--~~~vL~ 462 (1099)
+.....++..+...+..++++..+++|++++++.+++.+..+...... .......+.|+|+||+|.||+ +.++|+
T Consensus 1109 -~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~--~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~ 1185 (1466)
T PTZ00265 1109 -FLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRI--KNKNDIKGKIEIMDVNFRYISRPNVPIYK 1185 (1466)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCccccc--ccCCCCCceEEEEEEEEECCCCCCCcccc
Confidence 111223455677788889999999999999998765432111000000 000112357999999999985 358999
Q ss_pred eeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC---------------------------------------------
Q 001329 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--------------------------------------------- 497 (1099)
Q Consensus 463 ~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p--------------------------------------------- 497 (1099)
|+||+|++|+++|||||||||||||+++|+|+|+|
T Consensus 1186 ~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 (1466)
T PTZ00265 1186 DLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGG 1265 (1466)
T ss_pred CeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999998
Q ss_pred ---------CccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChh
Q 001329 498 ---------VSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 562 (1099)
Q Consensus 498 ---------~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 562 (1099)
++|+|.+||.+ .++|++|+||||+|++|++||+|||.|+.+. .+++++.++++.+++++
T Consensus 1266 ~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~------at~eeI~~A~k~A~l~~ 1339 (1466)
T PTZ00265 1266 SGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKED------ATREDVKRACKFAAIDE 1339 (1466)
T ss_pred cccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCC------CCHHHHHHHHHHcCCHH
Confidence 69999999986 4689999999999999999999999998542 58899999999999999
Q ss_pred HHhcCCCCcccC---CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccCh
Q 001329 563 LLDRYPPEKEIN---WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRP 635 (1099)
Q Consensus 563 ~~~~~p~~~~~~---~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l 635 (1099)
|+.++|.++++. .|.+|||||||||||||||+++|+|||||||||+||+++|+.+++.+++ .++|+|+||||+
T Consensus 1340 fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1340 FIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred HHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH
Confidence 999999876653 5789999999999999999999999999999999999999999998876 389999999999
Q ss_pred hHHHhcCEEEEEeC
Q 001329 636 ALVAFHDVVLSLDG 649 (1099)
Q Consensus 636 ~~i~~~D~Il~l~~ 649 (1099)
++++.||+|++|++
T Consensus 1420 sti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1420 ASIKRSDKIVVFNN 1433 (1466)
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999987
No 30
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.4e-59 Score=574.80 Aligned_cols=530 Identities=20% Similarity=0.240 Sum_probs=390.5
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHSTSK 165 (1099)
Q Consensus 87 ~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1099)
.++.++++++++++. +...+++.++...++...|...+.++|.+.... ...+...+. +.+++.++..+..
T Consensus 5 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 75 (576)
T TIGR02204 5 PLAALWPFVRPYRGR-----VLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFA----FLLVVALVLALGT 75 (576)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHH----HHHHHHHHHHHHH
Confidence 355666777766553 445555666667788888999999998755332 222221111 1112222233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1099)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~ 244 (1099)
++..++..+....+..+++..+|+++...|.+++++. .++..+|+++|++.+.+.+...+..++..++..+. ...+++
T Consensus 76 ~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~ 154 (576)
T TIGR02204 76 AARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIG-GLIMMF 154 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5555555566666888899999999999999988754 66889999999999877665555554444433322 223455
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001329 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1099)
Q Consensus 245 ~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1099)
+++|.+++++++..|+..++..++.++..+..++.++..+++.....+..+++++||.++.|+.+.+++++..++..+..
T Consensus 155 ~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 234 (576)
T TIGR02204 155 ITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAA 234 (576)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 67899888888777777777777888888888888888888888899999999999999999999888888877766654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1099)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l 403 (1099)
.+..+...+...+..++ ......++++ +++.. ..+..++|. +++... +...++.|+..+...+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~g~~~v~~g~lt~g~--~~~~~~----~~~~~~~pl~~~~~~~~~~ 301 (576)
T TIGR02204 235 RQRIRTRALLTAIVIVL---VFGAIVGVLW----VGAHDVIAGKMSAGT--LGQFVF----YAVMVAGSIGTLSEVWGEL 301 (576)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 43332222222221111 1111111221 12221 123446664 233222 2334557888888899999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEEcCCC
Q 001329 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNG 481 (1099)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~--~~vL~~vsl~i~~Ge~vaIvG~sG 481 (1099)
.++..+.+|+.++++.+++.+..... ...+ .+..+.|+++||+|.|+++ +++|+|+||++++||+++|+||||
T Consensus 302 ~~~~~~~~ri~~~l~~~~~~~~~~~~----~~~~-~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sG 376 (576)
T TIGR02204 302 QRAAGAAERLIELLQAEPDIKAPAHP----KTLP-VPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSG 376 (576)
T ss_pred HHHHHHHHHHHHHhCCCCcCCCCCCC----ccCC-cCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCC
Confidence 99999999999998765432211000 0000 1123469999999999753 579999999999999999999999
Q ss_pred CchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHH
Q 001329 482 SGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555 (1099)
Q Consensus 482 sGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l 555 (1099)
||||||+|+|+|+++|++|+|.+||.+ .+++++|+|+||+|++|++||+|||.++.+. .+++++.+++
T Consensus 377 sGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~------~~~~~~~~~l 450 (576)
T TIGR02204 377 AGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD------ATDEEVEAAA 450 (576)
T ss_pred CCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCC------CCHHHHHHHH
Confidence 999999999999999999999999965 3567899999999999999999999997543 4678999999
Q ss_pred HhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEE
Q 001329 556 KNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCIT 630 (1099)
Q Consensus 556 ~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ 630 (1099)
+.+++.++++++|.+.++ ++|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++ .++|+|+
T Consensus 451 ~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~Ii 530 (576)
T TIGR02204 451 RAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLI 530 (576)
T ss_pred HHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999976544 46889999999999999999999999999999999999999999988876 4899999
Q ss_pred EccChhHHHhcCEEEEEeCC
Q 001329 631 ISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 631 ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||||++.+..+|+|++++++
T Consensus 531 itH~~~~~~~~d~vi~l~~g 550 (576)
T TIGR02204 531 IAHRLATVLKADRIVVMDQG 550 (576)
T ss_pred EecchHHHHhCCEEEEEECC
Confidence 99999999999999999875
No 31
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-59 Score=541.72 Aligned_cols=500 Identities=17% Similarity=0.216 Sum_probs=385.6
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC
Q 001329 123 RLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR 202 (1099)
Q Consensus 123 ~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~ 202 (1099)
...++....++.++.... +.. ++..++..++..++..+..+...+++.+.-..+..++|+..+++....+..+.++.
T Consensus 18 ~qa~llA~~l~~l~~~~~--~~~-l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~ 94 (559)
T COG4988 18 AQAALLADILTKLIEGQL--FQS-LLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQK 94 (559)
T ss_pred HHHHHHHHHHHHHHhccc--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCC
Confidence 445555555666655442 111 11122222223334556677888888888888889999999999999998887664
Q ss_pred -CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001329 203 -ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQ 281 (1099)
Q Consensus 203 -~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~ 281 (1099)
.++..+.+++-|+.+...+..++.....+++.-++ .+...++.+|.-++++++.+|++-+.+..++...++..+++-+
T Consensus 95 ~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~-i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~ 173 (559)
T COG4988 95 PAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLL-ILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFS 173 (559)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46889999999999998888888777766554322 2334566899999999998888888888888887777777666
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 001329 282 LEGEYRQ-LHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFA 360 (1099)
Q Consensus 282 ~~a~~r~-~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 360 (1099)
...++.. ++++++ +.+++|+|++.+...+++.+..++..+..++..+.++.++.+..++. +++.++..+.+...+.+
T Consensus 174 ~~~~ls~~FLD~Lr-GL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa-~lsiAlvAv~~g~~ll~ 251 (559)
T COG4988 174 ALARLSGHFLDRLR-GLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFA-YLSIALVAVYIGFRLLG 251 (559)
T ss_pred HHHHHHHHHHHHhc-ChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHc
Confidence 6666554 455555 78999999999999988888888887777777777777776666543 33333222222111222
Q ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcC
Q 001329 361 GNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFS 440 (1099)
Q Consensus 361 g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~ 440 (1099)
.|+.++..+-+ +...-..+|.|+..++..++.-....+++|.++.+++.+.+........ . ....
T Consensus 252 ----~G~ltl~~~l~------~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~--~---~~~~ 316 (559)
T COG4988 252 ----EGDLTLFAGLF------VLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKA--E---VANE 316 (559)
T ss_pred ----cCCccHHHHHH------HHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccc--c---cccC
Confidence 03445543221 1223467899999999999999999999999999988665432111000 0 0011
Q ss_pred CCCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------cccccc
Q 001329 441 EANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 514 (1099)
Q Consensus 441 ~~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~ 514 (1099)
....++.+|+++.|++++++++|+||++++|+.++|||+||||||||+++|+|+.+|++|+|.+||++ .++|++
T Consensus 317 ~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 317 PPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred CCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 12345566999999988899999999999999999999999999999999999999999999999976 468999
Q ss_pred EEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHH
Q 001329 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMAR 591 (1099)
Q Consensus 515 i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIAR 591 (1099)
+++|+|+|++|.+|++|||.++.+. .+++++.++++++++.++++. |.+.++ +.|..|||||+|||++||
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~------~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPD------ASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALAR 469 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCc------CCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999998654 588999999999999999999 876554 468899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 592 AL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||+++++++|+||||++||.++|+.+++.+.+ +++|+|+||||+..++.+|+|++||++
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G 530 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNG 530 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCC
Confidence 99999999999999999999999999998876 489999999999999999999999975
No 32
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.4e-59 Score=567.65 Aligned_cols=504 Identities=16% Similarity=0.167 Sum_probs=371.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 001329 118 TALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKIS 197 (1099)
Q Consensus 118 t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~ 197 (1099)
..+.+..|.+.+.++|.+...... ... +..+++++++..++..+..|+..++..+...++..++|.++|+++...|.+
T Consensus 8 ~~~~~~~p~~~~~iid~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ 85 (569)
T PRK10789 8 AMLQLIPPKVVGIIVDGVTEQHMT-TGQ-ILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPE 85 (569)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 445556788888888876543211 111 111122222222233445566666666666668889999999999999999
Q ss_pred cccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001329 198 HVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLM 276 (1099)
Q Consensus 198 ~~~~-~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~ 276 (1099)
+|++ ..++..+|+++|++.+...+...+..++..++..+++.+.++++++|.+++++++.+|+..++..++.++..+..
T Consensus 86 ~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 165 (569)
T PRK10789 86 FYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERF 165 (569)
T ss_pred HHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9875 467899999999999875555444444444333322223333467999998888877877777777888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001329 277 SKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIE 356 (1099)
Q Consensus 277 ~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~ 356 (1099)
.+.++..+++.....+...++++||.|+.|+.+.+++.+..++..+...+.. +..+....+..........+++++
T Consensus 166 ~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~- 241 (569)
T PRK10789 166 KLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVA---RIDARFDPTIYIAIGMANLLAIGG- 241 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 7777777888888888888999999999999998777777666555433322 222222222211111111222221
Q ss_pred hhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCC
Q 001329 357 PFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGS 435 (1099)
Q Consensus 357 ~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~ 435 (1099)
++.+. .+..++|. +++++.+ ...++.|+..+...+..++++..+.+|+.++++.+++..... .
T Consensus 242 ---g~~lv~~g~lt~g~--l~a~~~~----~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~--~----- 305 (569)
T PRK10789 242 ---GSWMVVNGSLTLGQ--LTSFVMY----LGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS--E----- 305 (569)
T ss_pred ---HHHHHHcCCcCHHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC--C-----
Confidence 22221 23446653 3443332 334556777788888899999999999999987654322110 0
Q ss_pred CCCcCCCCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------
Q 001329 436 RNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------ 508 (1099)
Q Consensus 436 ~~~~~~~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------ 508 (1099)
......+.|+++|++|.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.+
T Consensus 306 -~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~ 384 (569)
T PRK10789 306 -PVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQL 384 (569)
T ss_pred -CCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCH
Confidence 001123469999999999754 579999999999999999999999999999999999999999999999975
Q ss_pred ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHH
Q 001329 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQ 585 (1099)
Q Consensus 509 ~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQ 585 (1099)
.++|++++||||+|++|++|++|||.++.+. .+++++.++++.+++++++.++|++.++ +.|.+|||||||
T Consensus 385 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 385 DSWRSRLAVVSQTPFLFSDTVANNIALGRPD------ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred HHHHhheEEEccCCeeccccHHHHHhcCCCC------CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 3567899999999999999999999987532 4778899999999999999999986554 367899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 586 RlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|++||||++++|+++|||||||+||+++++.+.+.+++ .|+|+|+||||++.++.+|+|++|+++
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G 525 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHG 525 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCC
Confidence 99999999999999999999999999999999998876 489999999999999999999999864
No 33
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-59 Score=533.52 Aligned_cols=535 Identities=19% Similarity=0.211 Sum_probs=356.0
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHHH
Q 001329 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAF-LRRVPLFFQLISENILLCFLLSTMHST 163 (1099)
Q Consensus 85 ~~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~ 163 (1099)
+..++.+..+.+|.-.......++..+++++.+-++.+..|.+.+..+|.+- .++.+..+......+...+++.+.++.
T Consensus 10 ~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~ 89 (591)
T KOG0057|consen 10 LKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSV 89 (591)
T ss_pred hHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHH
Confidence 5667777777777544333334556666666666777788888888887763 233342221111111222222233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1099)
Q Consensus 164 ~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L 242 (1099)
++.+...+....-+...++...+.|++...++.++|.++ ++++...+..-..++...+..++..++..++...+....+
T Consensus 90 F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l 169 (591)
T KOG0057|consen 90 FNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGIL 169 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555777888889999999999998664 5566555555555555555555555444443322221122
Q ss_pred HHHhhhhHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 001329 243 CSYASPKYVFWILAYVLG----AGTMMRNFSPAFGKLMSKEQQLEGE-YRQLHSRLRTHAESIAFYGGENKEESHIQQKF 317 (1099)
Q Consensus 243 ~~~~~~~l~l~il~~~~~----~~~i~~~~~~~~~~~~~~~q~~~a~-~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f 317 (1099)
..-..+.++++++..+.. ...++++ ..++++...+ +..+ .+...+. ..|-|.||.|+-|++|..+.+...
T Consensus 170 ~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~-Rn~fR~~~N~---Adn~as~~~~ds-L~Nye~VKsfNnE~~Ea~~y~~~l 244 (591)
T KOG0057|consen 170 YYKFGAAFALITLGTVGAYAAFTIVVTRW-RNRFRKAMNN---ADNSASRRAYDS-LINYEIVKSFNNEEYEASRYDGSL 244 (591)
T ss_pred HHHhchHHHHHHHHHHHHhheeEEeehhH-HHHHHHHHHh---hhhHHHHHHHHH-HhhHHHHHHcccHHHHHHHHHHHH
Confidence 222355555544432221 1122222 2233332222 2222 2233444 448899999999999987666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 318 KALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLS 397 (1099)
Q Consensus 318 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~ 397 (1099)
.+..+...+........++.|..+..+... ...++. ..| +..+.+|.|...++. +.+..+..++..++
T Consensus 245 ~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~-~im~l~----~~g-i~~~~mtvgdlv~~n------~l~~qL~~~l~~Lg 312 (591)
T KOG0057|consen 245 KTYERAGLKYSSSLAFLNFGQKAIFSVALT-FIMVLG----SNG-IAAGKMTVGDLVMVN------SLLFQLSLPLNFLG 312 (591)
T ss_pred HHHHHhhhhHHhHHHHHHHHHHHHHHHHHH-HHHHHH----hhh-hhhccccccchhhHH------HHHHHHHhHHHHHH
Confidence 555443322222222333444433221111 111111 112 333455777644433 23444556777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEE
Q 001329 398 ISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477 (1099)
Q Consensus 398 ~~~~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIv 477 (1099)
..+.++.+...-..-.+.+.+...++. ..+ .+.....+.|+|+||+|+|++++++|+++||+|++||.+|||
T Consensus 313 ~vyr~~~q~l~Dm~~~~~l~~~~~~i~--~~~------~~i~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIv 384 (591)
T KOG0057|consen 313 SVYRELRQALTDMRTLFILLEVDEDIQ--EAA------LPIELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIV 384 (591)
T ss_pred HHHHHHHHHHHhHHHHHhhhhhhhhhh--hcc------CCcccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEE
Confidence 777777666544333333222211111 100 011123456999999999988888999999999999999999
Q ss_pred cCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHH
Q 001329 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551 (1099)
Q Consensus 478 G~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i 551 (1099)
|+|||||||++|+|.|+++ ++|+|++||++ +++|+.|||||||..+|++||.+||.||.+. .+++++
T Consensus 385 G~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~s------as~eeV 457 (591)
T KOG0057|consen 385 GSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPS------ASDEEV 457 (591)
T ss_pred CCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCC------cCHHHH
Confidence 9999999999999999999 99999999987 4789999999999999999999999999865 689999
Q ss_pred HHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCc
Q 001329 552 VELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGT 626 (1099)
Q Consensus 552 ~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~ 626 (1099)
.++++++|++|.+.++|+++.+ ++|..|||||||||+||||++++|+|+++|||||+||.++|.++.+.+.. .|+
T Consensus 458 ~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~r 537 (591)
T KOG0057|consen 458 VEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGR 537 (591)
T ss_pred HHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCC
Confidence 9999999999999999998776 46889999999999999999999999999999999999999999998876 499
Q ss_pred EEEEEccChhHHHhcCEEEEEeCCC
Q 001329 627 SCITISHRPALVAFHDVVLSLDGEG 651 (1099)
Q Consensus 627 TvI~ItH~l~~i~~~D~Il~l~~~g 651 (1099)
|+|+|.||+++++.+|+|++++++.
T Consensus 538 TvI~IvH~l~ll~~~DkI~~l~nG~ 562 (591)
T KOG0057|consen 538 TVIMIVHRLDLLKDFDKIIVLDNGT 562 (591)
T ss_pred eEEEEEecchhHhcCCEEEEEECCe
Confidence 9999999999999999999999863
No 34
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.3e-57 Score=553.63 Aligned_cols=506 Identities=17% Similarity=0.202 Sum_probs=368.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHT 185 (1099)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~ 185 (1099)
++..+++.++...+.+..|...+.++|.+.... ...++. ++++++++.++..+..++..++..+....+..++|.
T Consensus 8 ~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 83 (544)
T TIGR01842 8 FIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLM----LTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQ 83 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666777888999999998776322 222221 111222222233444555556666666668888999
Q ss_pred HHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001329 186 RYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSE-LVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTM 264 (1099)
Q Consensus 186 ~~f~~l~~~~~~~~~~~~~n~~~Rit~Di~~~~~~i~~-l~~~~l~~il~~i~~~~~L~~~~~~~l~l~il~~~~~~~~i 264 (1099)
++|+++.+.|... .++...++++|++.+.+.+.. .+..++..++.. ++. .++++++|.+++++++..|+..++
T Consensus 84 ~~~~~ll~~~~~~----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~-~~~-~~l~~~~~~l~li~l~~~~l~~~i 157 (544)
T TIGR01842 84 PIFAASFSATLRR----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMP-IYL-LVCFLLHPWIGILALGGAVVLVGL 157 (544)
T ss_pred HHHHHHhcCcccC----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHH-HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999998743 244578999999998766554 333333333322 222 345678999988877766666555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 265 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKY 344 (1099)
Q Consensus 265 ~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1099)
...+.+..++..++.++..++......+..+++++||.|+.|+.+.+++++..++..+...+..+..........++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 235 (544)
T TIGR01842 158 ALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR-- 235 (544)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 555566666666777777777778888888899999999999999888888777766554433222211111111111
Q ss_pred HHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhc
Q 001329 345 LGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL 423 (1099)
Q Consensus 345 ~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~~~~Ri~ell~~~~e~ 423 (1099)
.....++++ +++.+ ..+..+.|. +++++. +...++.|+..+...+..++++..+.+|+.++++.+++.
T Consensus 236 -~~~~~~~~~----~g~~l~~~g~it~g~--l~a~~~----~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 304 (544)
T TIGR01842 236 -IVLQSLVLG----LGAYLAIDGEITPGM--MIAGSI----LVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSR 304 (544)
T ss_pred -HHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 111111222 22222 123446653 333332 334556788888889999999999999999999765432
Q ss_pred ccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEE
Q 001329 424 SIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502 (1099)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I 502 (1099)
.. . . ......+.++++||+|.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 305 ~~-~-~-------~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 375 (544)
T TIGR01842 305 DP-A-M-------PLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV 375 (544)
T ss_pred cC-C-C-------CCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 21 0 0 001123469999999999754 689999999999999999999999999999999999999999999
Q ss_pred EeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---
Q 001329 503 AKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI--- 573 (1099)
Q Consensus 503 ~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~--- 573 (1099)
.+||.+ .++|+.++||||+|++|++|++||+.++.+ ..+++++.++++.++++++++++|.+.++
T Consensus 376 ~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~ 449 (544)
T TIGR01842 376 RLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE------NADPEKIIEAAKLAGVHELILRLPDGYDTVIG 449 (544)
T ss_pred EECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCC------CCCHHHHHHHHHHhChHHHHHhCccccccccC
Confidence 999975 356789999999999999999999986532 24678899999999999999999976544
Q ss_pred CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 574 ~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
++|.+||||||||++||||++++|+++|||||||+||+++++++.+.+++ .|+|+|+||||++.+..+|+|++|+++
T Consensus 450 ~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G 529 (544)
T TIGR01842 450 PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDG 529 (544)
T ss_pred CCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 36889999999999999999999999999999999999999999998865 379999999999999999999999864
No 35
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.8e-57 Score=550.38 Aligned_cols=522 Identities=13% Similarity=0.074 Sum_probs=360.5
Q ss_pred HHHHHHHHh-hchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 88 LQVLAAILL-SEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1099)
Q Consensus 88 l~~Ll~~~~-p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1099)
.++++++++ |+++. ++..+++.++.+......+.+.+.+++.....+ .. .+...+++. ++..+..|
T Consensus 5 ~~~l~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~~---~~~~~~~~~----~~~~~~~~ 71 (555)
T TIGR01194 5 IGEILALLRSPFPAI-----TAFSIALGLAGGLAIIALLASINNAIHEENFLG-QG---SLFSFGGLC----LLALLFRI 71 (555)
T ss_pred HHHHHHHHhhccHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-ch---HHHHHHHHH----HHHHHHHH
Confidence 467777888 88774 444445555555666666676666654321000 00 111111111 12223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1099)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~-~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~ 245 (1099)
+..++..+...++..++|.++|+++.+.|+.+|++ +.++..+|+++|++.+...+.. +...+..++.. +....++++
T Consensus 72 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~-~~~~~~l~~ 149 (555)
T TIGR01194 72 GADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIF-FFCIAYLAY 149 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHH
Confidence 44445555555588889999999999999999976 4779999999999998876653 33444333322 233445667
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHH
Q 001329 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN--KEESHIQQKFKALTRH 323 (1099)
Q Consensus 246 ~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~--~e~~~l~~~f~~l~~~ 323 (1099)
++|.+++++++.+|+..++..++.++..+...+.++..+++.....+...+++++|.|+.++ .+.+++++..++..+.
T Consensus 150 ~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 229 (555)
T TIGR01194 150 LSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADL 229 (555)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHH
Confidence 89999998887777766666666667777777777778888888888888999999999854 3333333333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 324 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1099)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l 403 (1099)
.. +..........+...+.....+++++ +++.. +..++| .+++++.+ ...++.|+..+......+
T Consensus 230 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~t~g--~l~a~~~~----~~~l~~pi~~l~~~~~~~ 294 (555)
T TIGR01194 230 HI---IEILIFIAAENFGQLLFFLLIGCALF----AAAMF--ASIDAA--AISAFVLA----LLYIKGPLEMLVSALPIL 294 (555)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHh--cCCCHH--HHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 11 11112222222111111111111222 22211 233555 34444332 344567888888899999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCC--CCCcCCCCcEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEE
Q 001329 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGS--RNYFSEANYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLIT 477 (1099)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~--~~~~~~~~~I~~~~v~~~y~~~----~~vL~~vsl~i~~Ge~vaIv 477 (1099)
+++..+++|+.++++.+++.+........... .......+.|+++||+|.|++. +++|+|+||++++||+++|+
T Consensus 295 ~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aiv 374 (555)
T TIGR01194 295 AQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIV 374 (555)
T ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEE
Confidence 99999999999998642211100000000000 0000123569999999999753 36999999999999999999
Q ss_pred cCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHH
Q 001329 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551 (1099)
Q Consensus 478 G~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i 551 (1099)
||||||||||+++|+|+++|++|+|.++|.+ .++|+++++|+|||++|++|+++|+. +..+++++
T Consensus 375 G~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~---------~~~~~~~~ 445 (555)
T TIGR01194 375 GENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG---------EHASLDNA 445 (555)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc---------cchhHHHH
Confidence 9999999999999999999999999999975 35678999999999999999999941 12467889
Q ss_pred HHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-H---hcCcE
Q 001329 552 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-R---AMGTS 627 (1099)
Q Consensus 552 ~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l-~---~~g~T 627 (1099)
.++++.++++++++++|.++++. .+||||||||++||||++++|+++|||||||+||+++++.+++.+ + ..|+|
T Consensus 446 ~~~~~~~~l~~~~~~lp~g~~t~--~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~t 523 (555)
T TIGR01194 446 QQYLQRLEIADKVKIEDGGFSTT--TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKT 523 (555)
T ss_pred HHHHHHcCCchhhcccccccCCc--ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999866553 689999999999999999999999999999999999999997744 2 35899
Q ss_pred EEEEccChhHHHhcCEEEEEeCC
Q 001329 628 CITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 628 vI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+|+||||++++..+|+|++|+++
T Consensus 524 iiiisH~~~~~~~~d~i~~l~~G 546 (555)
T TIGR01194 524 IIIISHDDQYFELADQIIKLAAG 546 (555)
T ss_pred EEEEeccHHHHHhCCEEEEEECC
Confidence 99999999999999999999865
No 36
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=6.4e-57 Score=598.12 Aligned_cols=449 Identities=16% Similarity=0.184 Sum_probs=326.3
Q ss_pred HHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 001329 177 KIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWIL 255 (1099)
Q Consensus 177 ~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~~l~l~il 255 (1099)
....+++|++.|+++++.|++||++. .++..+|+++|++.+...+...+..++..++..+. ..+++++.+|.++++++
T Consensus 1034 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~-~li~~~~~~~~~~~~~~ 1112 (1522)
T TIGR00957 1034 IQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIG-ALIVILLATPIAAVIIP 1112 (1522)
T ss_pred HHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 33777899999999999999999865 56899999999999887776666655555443322 22334455665555444
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 256 AYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFG 335 (1099)
Q Consensus 256 ~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~ 335 (1099)
+.+++..++.+++.+..++..+..++..+.+.....+...++++||+|+.|++..++..+..+...+..........|.+
T Consensus 1113 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 1192 (1522)
T TIGR00957 1113 PLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLA 1192 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333334444444444444444444555566667777889999999999988765555554444333222222233333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 336 MIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHE 415 (1099)
Q Consensus 336 ~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~~~~Ri~e 415 (1099)
....++. ..+.+++....++. .+..+.|. +...+.| ...+..++..+...+..++....+.+|+.+
T Consensus 1193 ~~~~~~~----~~~~~~~~~~~v~~----~~~~~~g~--l~~~l~~----~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~ 1258 (1522)
T TIGR00957 1193 VRLECVG----NCIVLFAALFAVIS----RHSLSAGL--VGLSVSY----SLQVTFYLNWLVRMSSEMETNIVAVERLKE 1258 (1522)
T ss_pred HHHHHHH----HHHHHHHHHHHHHh----cCCCCHHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222221 11111111000011 12234442 2222322 344556777788888899999999999999
Q ss_pred HHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCc
Q 001329 416 LMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 416 ll~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
+++.++|........ .....++..+.|+|+||+++|+++ +++|+|+||+|++||++||||+||||||||+++|.|+
T Consensus 1259 ~~~~~~e~~~~~~~~---~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl 1335 (1522)
T TIGR00957 1259 YSETEKEAPWQIQET---APPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI 1335 (1522)
T ss_pred HhcCCCCccccccCC---CCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 997665432100000 001112345789999999999764 5799999999999999999999999999999999999
Q ss_pred CcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCC
Q 001329 495 WPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568 (1099)
Q Consensus 495 ~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p 568 (1099)
++|++|+|.+||+| .++|++|++|||||++|+|||||||.... ..+++++.++++.++++++++++|
T Consensus 1336 ~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-------~~sdeei~~al~~a~l~~~I~~lp 1408 (1522)
T TIGR00957 1336 NESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-------QYSDEEVWWALELAHLKTFVSALP 1408 (1522)
T ss_pred ccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-------CCCHHHHHHHHHHcCcHHHHhhCc
Confidence 99999999999986 46899999999999999999999997321 257899999999999999999999
Q ss_pred CCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCE
Q 001329 569 PEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDV 643 (1099)
Q Consensus 569 ~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~ 643 (1099)
.+.++ +.|.+||||||||++|||||+++|+|||||||||+||.++++.+++.+++ .++|+|+||||++++..+|+
T Consensus 1409 ~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~Dr 1488 (1522)
T TIGR00957 1409 DKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTR 1488 (1522)
T ss_pred cCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCE
Confidence 86654 35789999999999999999999999999999999999999999999986 48999999999999999999
Q ss_pred EEEEeCC
Q 001329 644 VLSLDGE 650 (1099)
Q Consensus 644 Il~l~~~ 650 (1099)
|++|++|
T Consensus 1489 IlVld~G 1495 (1522)
T TIGR00957 1489 VIVLDKG 1495 (1522)
T ss_pred EEEEECC
Confidence 9999964
No 37
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1e-56 Score=595.67 Aligned_cols=461 Identities=18% Similarity=0.210 Sum_probs=313.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1099)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~ 244 (1099)
++...+......+..+++|.++|+++++.|++||+++ .++..+|+++|++.+...+...+..++..++..+.. ..++.
T Consensus 971 ~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~-~i~i~ 1049 (1622)
T PLN03130 971 LLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLST-FVLIG 1049 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3333333333444777899999999999999999875 679999999999998877666666555555443222 22233
Q ss_pred HhhhhHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 001329 245 YASPKYVFWILAYVLGAGTMM-RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1099)
Q Consensus 245 ~~~~~l~l~il~~~~~~~~i~-~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~ 323 (1099)
+++| +.+++++.++++.+.. .++.+..++..+......+.......+..+++++||+|+.+++..+...+..+...+.
T Consensus 1050 ~~~~-~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~ 1128 (1622)
T PLN03130 1050 IVST-ISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRF 1128 (1622)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 3444 2333322222222222 2222333333333333334444556777789999999999776543333333222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCC---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 324 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPD---TSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISS 400 (1099)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~---~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~ 400 (1099)
.........|.+....++..++....+...+ +.++..... ..++| .+++ +...+...+..+....
T Consensus 1129 ~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v---~~~~~~~~~~~~~~~~G--~~ls-------~~~~~~~~l~~l~~~~ 1196 (1622)
T PLN03130 1129 TLVNMSSNRWLAIRLETLGGLMIWLTASFAV---MQNGRAENQAAFASTMG--LLLS-------YALNITSLLTAVLRLA 1196 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcccccccchhhhHHHH--HHHH-------HHHHHHHHHHHHHHHH
Confidence 1111111222222222111110000000000 011111000 11222 2222 1223334444555556
Q ss_pred HHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcC
Q 001329 401 RRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGP 479 (1099)
Q Consensus 401 ~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~ 479 (1099)
..++....+.+|+.++++.++|........ .....++..+.|+|+||+|+|+++ +++|+|+||+|++||++||||+
T Consensus 1197 ~~~e~~~~sveRi~e~~~~~~E~~~~~~~~---~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGr 1273 (1622)
T PLN03130 1197 SLAENSLNAVERVGTYIDLPSEAPLVIENN---RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGR 1273 (1622)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccccccCC---CCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECC
Confidence 677888999999999988765532110000 001112345689999999999754 5799999999999999999999
Q ss_pred CCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHH
Q 001329 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE 553 (1099)
Q Consensus 480 sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~ 553 (1099)
||||||||+++|+|+++|++|+|.+||+| .++|++|++|||||.+|+|||||||.++. ..+++++++
T Consensus 1274 SGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-------~~tdeei~~ 1346 (1622)
T PLN03130 1274 TGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-------EHNDADLWE 1346 (1622)
T ss_pred CCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-------CCCHHHHHH
Confidence 99999999999999999999999999986 46899999999999999999999998753 247899999
Q ss_pred HHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEE
Q 001329 554 LLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSC 628 (1099)
Q Consensus 554 ~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~Tv 628 (1099)
+++.++++++++++|.+.++ +.|.+||||||||++|||||+++|+|||||||||+||.++++.|++.+++ .++|+
T Consensus 1347 Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~Tv 1426 (1622)
T PLN03130 1347 SLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTM 1426 (1622)
T ss_pred HHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 99999999999999976655 35789999999999999999999999999999999999999999999986 48999
Q ss_pred EEEccChhHHHhcCEEEEEeCC
Q 001329 629 ITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 629 I~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|+||||++++..+|+|++|++|
T Consensus 1427 I~IAHRL~tI~~~DrIlVLd~G 1448 (1622)
T PLN03130 1427 LIIAHRLNTIIDCDRILVLDAG 1448 (1622)
T ss_pred EEEeCChHHHHhCCEEEEEECC
Confidence 9999999999999999999974
No 38
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-59 Score=520.82 Aligned_cols=535 Identities=18% Similarity=0.231 Sum_probs=360.4
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHH--HHH
Q 001329 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTM--HST 163 (1099)
Q Consensus 86 ~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~--~~~ 163 (1099)
+.++...++++|.+....--..+..++++.+.-++.+.+|.+.+++.+.+..... .-+..+..+.++.++.... +..
T Consensus 196 rk~~~~~~ylwp~~~~alql~v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~-~~~~~~~~~v~L~flqg~gtgsG~ 274 (790)
T KOG0056|consen 196 RKLRTVAPYLWPTKSIALQLRVVFCLFLLIIGRLINVSLPILSKWIVDELTAPDT-FQYSLVFLYVFLKFLQGGGTGSGF 274 (790)
T ss_pred ceeEEeccccccCCCcchhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcch-hhHHHHHHHHHHHHHhcCCccccc
Confidence 3444455666664432211122333334444457788899999999988762221 1122222222222221110 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCCh---hHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHP---EQRLASDVPRFCSELSELVQDDLTAVTDGLLYT 239 (1099)
Q Consensus 164 ~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~-~~~n~---~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~ 239 (1099)
.+-++..+=++..+.-++.+-...|+|+..+++.|+-+ +.++. +.|=++-+. +.+.+..-+.+.+..+..+++|
T Consensus 275 ~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vY- 352 (790)
T KOG0056|consen 275 LNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVY- 352 (790)
T ss_pred hhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhh-
Confidence 33344444455556677788888999999999988844 44432 334444444 3222222222323222222222
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 001329 240 WRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKA 319 (1099)
Q Consensus 240 ~~L~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~ 319 (1099)
+....||...+++++.+.....++.++...-.+..++......+.|.......-|.|+||-|++|+.|.++..+...+
T Consensus 353 --F~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~ 430 (790)
T KOG0056|consen 353 --FFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILK 430 (790)
T ss_pred --hhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHH
Confidence 112246666666655444333333333222222223333333333444444455899999999999997655554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 320 LTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSI 398 (1099)
Q Consensus 320 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~ 398 (1099)
..+...+....-...+..|+.+ +.+-++.+..+..+.. .+..|+|+.. - +..+++.+.+|+..++.
T Consensus 431 Yqk~E~ks~~sLnfLN~~Qn~I-------i~lgll~gsll~aY~Vt~q~ltVGDfV--l----f~TYliqLy~PLN~FGT 497 (790)
T KOG0056|consen 431 YQKQEWKSLASLNFLNIVQNGI-------IGLGLLAGSLLCAYRVTEQTLTVGDFV--L----FLTYLIQLYMPLNFFGT 497 (790)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-------hhhHHhhhhheeeeeeeecccccccee--h----HHHHHHHHhCchHHHHH
Confidence 4333222221111222223222 1111111111222222 2334555432 2 23456788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEc
Q 001329 399 SSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITG 478 (1099)
Q Consensus 399 ~~~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG 478 (1099)
.++.+++...-.++++|++.+++|+.+.+.. .+.....+.|+|+||+|.|.+++++|+||||+++||+.+|+||
T Consensus 498 ~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a------~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG 571 (790)
T KOG0056|consen 498 YYRSIQKNFIDMENMFDLLKEEPEVVDLPGA------PPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVG 571 (790)
T ss_pred HHHHHHHhhhhHHHHHHHhhcCchhhcCCCC------CCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEEC
Confidence 9999999999999999999888776542211 1122346789999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHH
Q 001329 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1099)
Q Consensus 479 ~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~ 552 (1099)
|||+||||++|++.++++.++|.|.+||+| .++|++||.||||..+|++||..||.|+.+. +++|++.
T Consensus 572 ~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~------Asneevy 645 (790)
T KOG0056|consen 572 PSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPS------ASNEEVY 645 (790)
T ss_pred CCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCC------CChHHHH
Confidence 999999999999999999999999999998 5789999999999999999999999998765 5889999
Q ss_pred HHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcE
Q 001329 553 ELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTS 627 (1099)
Q Consensus 553 ~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~T 627 (1099)
++++.+++++.+-.+|+++.+ ++|-.|||||||||||||+++++|.|++|||+|||||..+|+.|+..+.+. ++|
T Consensus 646 aAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RT 725 (790)
T KOG0056|consen 646 AAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRT 725 (790)
T ss_pred HHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCc
Confidence 999999999999999998765 467899999999999999999999999999999999999999999999874 999
Q ss_pred EEEEccChhHHHhcCEEEEEeCC
Q 001329 628 CITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 628 vI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
.|+|+||++++-++|.|++++++
T Consensus 726 tIVvAHRLSTivnAD~ILvi~~G 748 (790)
T KOG0056|consen 726 TIVVAHRLSTIVNADLILVISNG 748 (790)
T ss_pred eEEEeeeehheecccEEEEEeCC
Confidence 99999999999999999999875
No 39
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7e-56 Score=587.01 Aligned_cols=454 Identities=17% Similarity=0.209 Sum_probs=324.4
Q ss_pred HHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001329 179 VTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAY 257 (1099)
Q Consensus 179 L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~~l~l~il~~ 257 (1099)
..+++|.+.|+++.+.|++||++. .++..+|+++|++.+...+...+..++..++..+. +..++++.+|.+.++++.+
T Consensus 1029 ~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~-~li~~~~~~p~~~~~~i~~ 1107 (1560)
T PTZ00243 1029 GSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICS-SILVTSASQPFVLVALVPC 1107 (1560)
T ss_pred HHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999875 67999999999999887776655555554443322 2233445566333222221
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 258 VLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMI 337 (1099)
Q Consensus 258 ~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~ 337 (1099)
..+...+..++.+..++..+......+.+.....+...++++|++|+.++.+.+++.+..+...+..........|.+..
T Consensus 1108 ~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~ 1187 (1560)
T PTZ00243 1108 GYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVR 1187 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222223333444444444444455556667788888999999999999988777777776665444333344444444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 338 QDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELM 417 (1099)
Q Consensus 338 ~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~~~~Ri~ell 417 (1099)
..++..+...+++++.+.. .+.+ .+..+.|... . +..+...+..++..+...+..++....+.+|+.+++
T Consensus 1188 ~~~l~~~~~~~~~~~~~~~-~~~~---~~~~~~g~l~--~----~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~ 1257 (1560)
T PTZ00243 1188 VEFLSNIVVTVIALIGVIG-TMLR---ATSQEIGLVS--L----SLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYT 1257 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhc---cCCCCHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433222111111111110 0101 1122344211 1 122234455677777888889999999999999998
Q ss_pred hhchhcccCC-C--------------------CCCCCCC---CCCcCCCCcEEEEeeEEEcCCC-CceeeeeeEEEeCCC
Q 001329 418 VISRELSIED-K--------------------SPQRNGS---RNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGS 472 (1099)
Q Consensus 418 ~~~~e~~~~~-~--------------------~~~~~~~---~~~~~~~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge 472 (1099)
+..++.+.+. . ...+... .+..+..+.|+|+||+|+|+++ +++|+||||+|++||
T Consensus 1258 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~Ge 1337 (1560)
T PTZ00243 1258 DEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPRE 1337 (1560)
T ss_pred hcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCC
Confidence 6433211000 0 0000000 0011124679999999999765 459999999999999
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~ 546 (1099)
++||||+||||||||+++|+|+++|++|+|.+||+| .++|++|++|||||++|+|||+|||.... ..
T Consensus 1338 kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-------~~ 1410 (1560)
T PTZ00243 1338 KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-------EA 1410 (1560)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-------CC
Confidence 999999999999999999999999999999999986 46899999999999999999999997432 25
Q ss_pred CHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001329 547 THGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHK-PKFAILDECTSAVTTDMEERFCAKVR 622 (1099)
Q Consensus 547 ~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~-P~iliLDEpTSaLD~~~~~~l~~~l~ 622 (1099)
++++++++++.+++++++.++|.+.++ +.|.+||||||||++|||||+++ |+|||||||||+||+++++.+++.++
T Consensus 1411 sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243 1411 SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 789999999999999999999986654 36789999999999999999996 89999999999999999999999987
Q ss_pred h--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 623 A--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 623 ~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+ .++|+|+||||++++..+|+|++|+++
T Consensus 1491 ~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G 1520 (1560)
T PTZ00243 1491 SAFSAYTVITIAHRLHTVAQYDKIIVMDHG 1520 (1560)
T ss_pred HHCCCCEEEEEeccHHHHHhCCEEEEEECC
Confidence 6 489999999999999999999999874
No 40
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.7e-56 Score=586.11 Aligned_cols=458 Identities=17% Similarity=0.214 Sum_probs=313.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001329 171 LSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPK 249 (1099)
Q Consensus 171 l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~~ 249 (1099)
+......+..+++|++.++++.+.|++||++. .++..+|+++|++.+...+...+..++..++..+. +..++.++++.
T Consensus 973 ~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~-~~i~~~~~~~~ 1051 (1495)
T PLN03232 973 WLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLS-TFALIGTVSTI 1051 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33333444777899999999999999999875 67999999999999887776655555554433222 11222233332
Q ss_pred HHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Q 001329 250 YVFWILAYVLGAGTMMRNFS-PAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVL 328 (1099)
Q Consensus 250 l~l~il~~~~~~~~i~~~~~-~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~ 328 (1099)
.+++++.+++..++...+. +..++..+......+.+.....+...++++||+|+.+++..+..++..+...+......
T Consensus 1052 -~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 1130 (1495)
T PLN03232 1052 -SLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANT 1130 (1495)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222222 22222333333344445556677778999999999987665433333222222111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 329 HDHWWFGMIQDFLLKYLGATVAVILIIEPFF-AGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLS 407 (1099)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~-~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~ 407 (1099)
....|.+.....+ +..+.++......+ .+.. + ...+....+. ....+...+..++..+...+.+++...
T Consensus 1131 ~~~~wl~~~~~~~----~~~~~~~~~~~~v~~~~~~--~-~~~~~~~~~g---~~~~~~~~~~~~l~~l~~~~~~~~~~~ 1200 (1495)
T PLN03232 1131 SSNRWLTIRLETL----GGVMIWLTATFAVLRNGNA--E-NQAGFASTMG---LLLSYTLNITTLLSGVLRQASKAENSL 1200 (1495)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHccccc--c-ccccchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222211111 11110000000001 1111 0 0011111111 112233445567777777888899999
Q ss_pred HHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhH
Q 001329 408 GYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSS 486 (1099)
Q Consensus 408 ~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKST 486 (1099)
.+.+|+.++++.++|........ .....++..+.|+|+||+|+|+++ +++|+|+||+|++||++||||+|||||||
T Consensus 1201 ~s~eRi~e~~~~~~e~~~~~~~~---~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKST 1277 (1495)
T PLN03232 1201 NSVERVGNYIDLPSEATAIIENN---RPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSS 1277 (1495)
T ss_pred HHHHHHHHHhcCCccccccccCC---CCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHH
Confidence 99999999998766532110000 001112334679999999999654 67999999999999999999999999999
Q ss_pred HHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCC
Q 001329 487 LFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 560 (1099)
Q Consensus 487 Ll~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l 560 (1099)
|+++|+|+++|++|+|.+||+| .++|++|++|||||++|+|||+|||.++. +.+++++.++++.+++
T Consensus 1278 L~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-------~~sdeei~~al~~a~l 1350 (1495)
T PLN03232 1278 MLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-------EHNDADLWEALERAHI 1350 (1495)
T ss_pred HHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-------CCCHHHHHHHHHHcCC
Confidence 9999999999999999999976 46899999999999999999999998753 2578999999999999
Q ss_pred hhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccCh
Q 001329 561 EYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRP 635 (1099)
Q Consensus 561 ~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l 635 (1099)
+++++++|.+.++ +.|.+||||||||++|||||+++|+|||||||||+||+++++.+++.+++ .++|+|+||||+
T Consensus 1351 ~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl 1430 (1495)
T PLN03232 1351 KDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRL 1430 (1495)
T ss_pred HHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 9999999976554 35789999999999999999999999999999999999999999999986 489999999999
Q ss_pred hHHHhcCEEEEEeCC
Q 001329 636 ALVAFHDVVLSLDGE 650 (1099)
Q Consensus 636 ~~i~~~D~Il~l~~~ 650 (1099)
+++..+|+|++|++|
T Consensus 1431 ~ti~~~DrIlVL~~G 1445 (1495)
T PLN03232 1431 NTIIDCDKILVLSSG 1445 (1495)
T ss_pred HHHHhCCEEEEEECC
Confidence 999999999999964
No 41
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.4e-52 Score=555.98 Aligned_cols=498 Identities=14% Similarity=0.148 Sum_probs=331.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 001329 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHST----SKYITGTLSLQFRKIVTKL 182 (1099)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~----~~yl~~~l~~~~r~~L~~~ 182 (1099)
++..+++.++.+.+....|.+.+.+++.+.....+ .... . +.+++++..++..+ ..+....++.+ +...
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~-~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----ir~~ 375 (1495)
T PLN03232 303 FWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA-WVGY-V-YAFLIFFGVTFGVLCESQYFQNVGRVGFR----LRST 375 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-chHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 34444555666777778888889888876543321 1111 1 11111111122211 11222344444 5556
Q ss_pred HHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HH
Q 001329 183 IHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYV-LG 260 (1099)
Q Consensus 183 l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~~l~l~il~~~-~~ 260 (1099)
++...|++.+.++..++++. .++..+++++|++++.+.. ..+..+....+..++..+.+ +...+++.++.+.+ ++
T Consensus 376 l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l--~~~lg~~~l~~~~v~~l 452 (1495)
T PLN03232 376 LVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLL--YQQLGVASLFGSLILFL 452 (1495)
T ss_pred HHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHH
Confidence 67788999999998877653 5688999999999987654 23333332222222211111 11111111111111 11
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 261 AGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDF 340 (1099)
Q Consensus 261 ~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~ 340 (1099)
+..+...++++..+..++.++..++......+..+++++||+|+.|+.+.+++++..++..+..++. ....++. .+
T Consensus 453 ~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~---~~~~~~~-~~ 528 (1495)
T PLN03232 453 LIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKA---QLLSAFN-SF 528 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HH
Confidence 1112334556666666666666666667788888999999999999988766655444333322221 1222211 11
Q ss_pred HHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001329 341 LLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVI 419 (1099)
Q Consensus 341 ~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~~~~Ri~ell~~ 419 (1099)
+..... .++.++. +++... .+..+.| .+++.+. ++..+..|+..+...+..+.++..+++|+.++++.
T Consensus 529 ~~~~~~-~~~~~~~----fg~~~v~~~~lt~g--~vf~~l~----l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~ 597 (1495)
T PLN03232 529 ILNSIP-VVVTLVS----FGVFVLLGGDLTPA--RAFTSLS----LFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLS 597 (1495)
T ss_pred HHHHHH-HHHHHHH----HHHHHHhCCCCCHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111111 1111111 111111 2233444 3344332 33445567777888888999999999999999976
Q ss_pred chhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC
Q 001329 420 SRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL 497 (1099)
Q Consensus 420 ~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~--~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p 497 (1099)
+++..... . . .....+.|+++|++|.|++ ++++|+|+||+|++||.++|+||||||||||+++|+|+++|
T Consensus 598 ~~~~~~~~-~-~------~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~ 669 (1495)
T PLN03232 598 EERILAQN-P-P------LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH 669 (1495)
T ss_pred cccccccc-C-C------cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence 54321110 0 0 0011246999999999975 36899999999999999999999999999999999999999
Q ss_pred CccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---C
Q 001329 498 VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---N 574 (1099)
Q Consensus 498 ~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~ 574 (1099)
++|.+. .+|++|+||+|+|++|++||+|||.++.+ .++++..++++.+++.+.++.+|++.++ +
T Consensus 670 ~~G~i~------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-------~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe 736 (1495)
T PLN03232 670 AETSSV------VIRGSVAYVPQVSWIFNATVRENILFGSD-------FESERYWRAIDVTALQHDLDLLPGRDLTEIGE 736 (1495)
T ss_pred cCCCEE------EecCcEEEEcCccccccccHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhCCCCCCceecC
Confidence 998763 24668999999999999999999999853 4678899999999999999999986655 3
Q ss_pred CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK-VRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 575 ~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~-l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
.|.+|||||||||+||||++++|+|+||||||||||+++++++.+. ++. .|+|+|+|||+++.++.+|+|++|+++
T Consensus 737 ~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G 815 (1495)
T PLN03232 737 RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEG 815 (1495)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCC
Confidence 6789999999999999999999999999999999999999988654 443 589999999999999999999999864
No 42
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.7e-52 Score=550.50 Aligned_cols=499 Identities=15% Similarity=0.141 Sum_probs=328.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 001329 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMH--STSKYITGTLSLQFRKIVTKLIH 184 (1099)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~--~~~~yl~~~l~~~~r~~L~~~l~ 184 (1099)
++..+++.++...+....|.+.+.+++.+.....+ ....+. .+++ ++..++. ....|... ..++..++...++
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~-~~~~~~-~~~l-~~~~~~~~~~~~~~~~~--~~~~~~~ir~~L~ 377 (1622)
T PLN03130 303 FWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA-WIGYIY-AFSI-FVGVVLGVLCEAQYFQN--VMRVGFRLRSTLV 377 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hHHHHH-HHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 34445555666677778888888888877544321 111111 1111 1111111 11122222 1233333555677
Q ss_pred HHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHH
Q 001329 185 TRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWI-LAYVLGAG 262 (1099)
Q Consensus 185 ~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~~l~l~i-l~~~~~~~ 262 (1099)
..+|+|.++++...+++. .++..+++++|++++...... +..+....+..++..+.+. ...+++.++ ++++++..
T Consensus 378 ~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~--~~lg~~~l~g~~v~~l~~ 454 (1622)
T PLN03130 378 AAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLY--QQLGVASLIGSLMLVLMF 454 (1622)
T ss_pred HHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 788999999998877653 568899999999998776532 3333322222222111111 111111111 11111122
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 263 TMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLL 342 (1099)
Q Consensus 263 ~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~ 342 (1099)
.+...+.++..+..++..+...+......+...++++||+|+.|+...+++++..++..+..++ ...... +..++.
T Consensus 455 ~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~---~~~~~~-~~~~~~ 530 (1622)
T PLN03130 455 PIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRK---AQLLSA-FNSFIL 530 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHH
Confidence 2233455566666666656555566778888899999999999998876555443332222111 111111 111111
Q ss_pred HHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 001329 343 KYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISR 421 (1099)
Q Consensus 343 ~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~~~~Ri~ell~~~~ 421 (1099)
..... +..++. +++.. ..+..+.|. +++.+. .+..+..|+..+...+..+.++..+++|+.++++.++
T Consensus 531 ~~~~~-~v~~~~----fg~~~~~~g~Lt~g~--vf~~l~----l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e 599 (1622)
T PLN03130 531 NSIPV-LVTVVS----FGVFTLLGGDLTPAR--AFTSLS----LFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEE 599 (1622)
T ss_pred HHHHH-HHHHHH----HHHHHHhCCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 11110 111111 11111 122335543 333332 2334456777788888899999999999999997543
Q ss_pred hcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCc
Q 001329 422 ELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499 (1099)
Q Consensus 422 e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~--~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~ 499 (1099)
....+. . .. ....+.|+++|++|.|++ ++++|+|+||+|++||.++|+||||||||||+++|+|+++|++
T Consensus 600 ~~~~~~-~--~~-----~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~ 671 (1622)
T PLN03130 600 RVLLPN-P--PL-----EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRS 671 (1622)
T ss_pred cccccC-C--cc-----cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCC
Confidence 221100 0 00 011246999999999975 3679999999999999999999999999999999999999999
Q ss_pred -cEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CC
Q 001329 500 -GHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NW 575 (1099)
Q Consensus 500 -G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~ 575 (1099)
|+|.+.| +|+||+|+|++|++||+|||.++.+ .++++..++++.+++.++++.+|++.++ +.
T Consensus 672 GG~I~l~~-------~Iayv~Q~p~LfngTIreNI~fg~~-------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~ 737 (1622)
T PLN03130 672 DASVVIRG-------TVAYVPQVSWIFNATVRDNILFGSP-------FDPERYERAIDVTALQHDLDLLPGGDLTEIGER 737 (1622)
T ss_pred CceEEEcC-------eEEEEcCccccCCCCHHHHHhCCCc-------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCC
Confidence 9998654 7999999999999999999999854 3578899999999999999999986655 36
Q ss_pred CCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA-KVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~-~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|.+|||||||||+||||++++|+|+||||||||||+++++++.+ .++. .|+|+|+|||+++.+..+|+|++|+++
T Consensus 738 G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G 815 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEG 815 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCC
Confidence 78999999999999999999999999999999999999998764 4443 589999999999999999999999864
No 43
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.6e-54 Score=526.94 Aligned_cols=509 Identities=16% Similarity=0.163 Sum_probs=343.4
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 91 LAAILLSEMGKMGARDLLALVGIVVLRTALSNRL-AKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITG 169 (1099)
Q Consensus 91 Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l-~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~ 169 (1099)
++++++++++. ++..+++.++...+.+.. +.+.++++|.+.. ....+ ..+.+++++..++..+..|+..
T Consensus 4 ~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 73 (547)
T PRK10522 4 LRLVWRQYRWP-----FISVMALSLASAALGIGLIAFINQRLIETADT-SLLVL----PEFLGLLLLLMAVTLGSQLALT 73 (547)
T ss_pred HHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cchHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777663 444455555555555553 5666777775432 11111 1111111111222334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001329 170 TLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASP 248 (1099)
Q Consensus 170 ~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~ 248 (1099)
..+ .++..++|.++|+++...|.++|+++ .++..+|+++|++.+...+.. +...+..++..++ ...++++++|
T Consensus 74 ~~~----~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~-~~~~l~~~~~ 147 (547)
T PRK10522 74 TLG----HHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLG-SAAYLAWLSP 147 (547)
T ss_pred HHH----HHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHhH
Confidence 444 44777899999999999999999764 679999999999988765443 3333444333322 2344567899
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-
Q 001329 249 KYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVV- 327 (1099)
Q Consensus 249 ~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~- 327 (1099)
.+++++++.+|+..++..++.++..+...+.++..+++.....+..+++++++ ++.+..+ +.+.+++++..+...+.
T Consensus 148 ~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~-~~~~~~~~~~~~~~~~~~ 225 (547)
T PRK10522 148 KMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAE-YVFENEYEPDAQEYRHHI 225 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHH-HHHHHHHhHHHHHHHhhh
Confidence 99998888888777777778888888777777788888888888888888885 4444322 12334444444332221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 328 LHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLS 407 (1099)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~ 407 (1099)
.+..........+........+++++ ++++... ..+.+.+.+++. .+..+..|+..+......++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~------~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 226 IRADTFHLSAVNWSNIMMLGAIGLVF----YMANSLG--WADTNVAATYSL------TLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhh--cCChHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222211111101111111111 1222211 112222222211 12224467888888888999999
Q ss_pred HHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHH
Q 001329 408 GYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSL 487 (1099)
Q Consensus 408 ~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTL 487 (1099)
.+.+|+.++++.+++.+.+. . . . .+..+.|+++||+|.|++++++|+|+||+|++||+++|+||||||||||
T Consensus 294 ~a~~ri~~l~~~~~~~~~~~-~--~----~-~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL 365 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEFPR-P--Q----A-FPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTL 365 (547)
T ss_pred HHHHHHHHHhcccccccccc-c--c----c-cCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHH
Confidence 99999999875433211000 0 0 0 0112469999999999866789999999999999999999999999999
Q ss_pred HHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh
Q 001329 488 FRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561 (1099)
Q Consensus 488 l~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 561 (1099)
+++|+|+++|++|+|.+||.+ .++|++++||||||++|++|++|| + . ..+++++.++++.+++.
T Consensus 366 ~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~------~~~~~~~~~~~~~~~l~ 435 (547)
T PRK10522 366 AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-K------PANPALVEKWLERLKMA 435 (547)
T ss_pred HHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-C------chHHHHHHHHHHHcCCc
Confidence 999999999999999999975 357889999999999999999998 1 1 24567888999999998
Q ss_pred hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhH
Q 001329 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPAL 637 (1099)
Q Consensus 562 ~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~ 637 (1099)
+..+. +.+. ..|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+ .|+|+|+||||++.
T Consensus 436 ~~~~~-~~~~--~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~ 512 (547)
T PRK10522 436 HKLEL-EDGR--ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY 512 (547)
T ss_pred hhhhc-cccC--CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH
Confidence 76553 2211 13678999999999999999999999999999999999999998877642 48999999999999
Q ss_pred HHhcCEEEEEeCC
Q 001329 638 VAFHDVVLSLDGE 650 (1099)
Q Consensus 638 i~~~D~Il~l~~~ 650 (1099)
++.+|+|++|+++
T Consensus 513 ~~~~d~i~~l~~G 525 (547)
T PRK10522 513 FIHADRLLEMRNG 525 (547)
T ss_pred HHhCCEEEEEECC
Confidence 9999999999874
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.8e-53 Score=560.63 Aligned_cols=456 Identities=17% Similarity=0.211 Sum_probs=322.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001329 171 LSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPK 249 (1099)
Q Consensus 171 l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~~ 249 (1099)
+......+..++++.+.++++.+.|++||++. .++..+|+++|++.+...+...+..++..++..+.. ..++++++|.
T Consensus 948 ~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~-l~~i~~~~p~ 1026 (1490)
T TIGR01271 948 PLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGA-IFVVSVLQPY 1026 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33333444778899999999999999999874 678999999999998877776666665555443332 2334456776
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 250 YVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLH 329 (1099)
Q Consensus 250 l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~ 329 (1099)
++++++.++++..++..++.+..+++.+......+.......+...++++||+|+.++.+.+++.+..+...........
T Consensus 1027 l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1106 (1490)
T TIGR01271 1027 IFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLS 1106 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433322222222223333333333333333444455566777779999999999999887777776654443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 330 DHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGY 409 (1099)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~~ 409 (1099)
...|.+....++......++ .++. ++.. ..+.+++|.. ++ + ...+..++..+...+..+.....+
T Consensus 1107 ~~~wl~~~~~~i~~~~~~~~-~~l~----~~~~-~~~~g~~g~~--l~---~----~~~l~~~l~~l~~~~~~le~~~~s 1171 (1490)
T TIGR01271 1107 TLRWFQMRIDIIFVFFFIAV-TFIA----IGTN-QDGEGEVGII--LT---L----AMNILSTLQWAVNSSIDVDGLMRS 1171 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHH----HHHh-cCCccHHHHH--HH---H----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333332211111111 1111 1111 1112223321 11 1 223334455566667788888999
Q ss_pred HHHHHHHHhhchhcccCCCCC-----------CCCCCCCCcCCCCcEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEE
Q 001329 410 ADRIHELMVISRELSIEDKSP-----------QRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLIT 477 (1099)
Q Consensus 410 ~~Ri~ell~~~~e~~~~~~~~-----------~~~~~~~~~~~~~~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIv 477 (1099)
.+|+.++++.++|...+.... ........++..+.|+|+||+++|++ .+++|+|+||+|++||++|||
T Consensus 1172 ~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIv 1251 (1490)
T TIGR01271 1172 VSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLL 1251 (1490)
T ss_pred HHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEE
Confidence 999999987665532111000 00000112334578999999999975 468999999999999999999
Q ss_pred cCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHH
Q 001329 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551 (1099)
Q Consensus 478 G~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i 551 (1099)
|+||||||||+++|+|+++ ++|+|.+||.+ .++|++|+||||||++|+||||+||.... ..+++++
T Consensus 1252 GrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-------~~tdeei 1323 (1490)
T TIGR01271 1252 GRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-------QWSDEEI 1323 (1490)
T ss_pred CCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-------CCCHHHH
Confidence 9999999999999999997 79999999976 46789999999999999999999996431 2578999
Q ss_pred HHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCc
Q 001329 552 VELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGT 626 (1099)
Q Consensus 552 ~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~ 626 (1099)
+++++.+++.+++.++|.+.++ +.|.+||||||||++|||||+++|+|||||||||+||+++++.|++.+++ .++
T Consensus 1324 ~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~ 1403 (1490)
T TIGR01271 1324 WKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNC 1403 (1490)
T ss_pred HHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999876554 35788999999999999999999999999999999999999999999986 389
Q ss_pred EEEEEccChhHHHhcCEEEEEeCC
Q 001329 627 SCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 627 TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|+|+||||++++..+|+|++|+++
T Consensus 1404 TvI~IaHRl~ti~~~DrIlvL~~G 1427 (1490)
T TIGR01271 1404 TVILSEHRVEALLECQQFLVIEGS 1427 (1490)
T ss_pred EEEEEecCHHHHHhCCEEEEEECC
Confidence 999999999999999999999864
No 45
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=6e-50 Score=531.71 Aligned_cols=506 Identities=15% Similarity=0.169 Sum_probs=332.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLI-SENILLCF-LLSTMHSTSKYITGTLSLQFRKIVTKLIH 184 (1099)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l-~~~~~l~~-~~~~~~~~~~yl~~~l~~~~r~~L~~~l~ 184 (1099)
++..+++.++.+.++...|.+.+.+++.+.+...+...... +..++++. +..++.....+....++.+ +...+.
T Consensus 319 ~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----ir~~L~ 394 (1522)
T TIGR00957 319 FLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMR----IKTAVM 394 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 34445555666777778888888888866443222111111 11111111 1112222233344555555 445567
Q ss_pred HHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHH
Q 001329 185 TRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWI-LAYVLGAG 262 (1099)
Q Consensus 185 ~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~~l~l~i-l~~~~~~~ 262 (1099)
...|+|.++++..++++. .++..+++++|++++.+.. ..+..+...++..++..+. ++..++.+.++ +++++++.
T Consensus 395 ~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~l--l~~~~g~~~l~~l~~~~~~~ 471 (1522)
T TIGR00957 395 GAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYF--LWLNLGPSVLAGVAVMVLMV 471 (1522)
T ss_pred HHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHH
Confidence 788999999998887664 4689999999999977643 2333333333322222222 22233322222 22222333
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 263 TMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLL 342 (1099)
Q Consensus 263 ~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~ 342 (1099)
.+...+.+++.+...+..+...+......+..++++.||+|+.|+...+++++..++..+..++. .+ ...+..+..
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~---~~-~~~~~~~~~ 547 (1522)
T TIGR00957 472 PLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKS---AY-LHAVGTFTW 547 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHH
Confidence 33444556666666566665555556788888999999999999988766655444433322211 11 111111111
Q ss_pred HHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 001329 343 KYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRE 422 (1099)
Q Consensus 343 ~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~~~~Ri~ell~~~~e 422 (1099)
.... .+..++.+..+. +..+..+++.+..++.+. ++..+..|+..+......+.++..+.+|+.++++.+++
T Consensus 548 ~~~~-~~~~~~~f~~~~---~~~~~~~l~~~~~f~~l~----l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~ 619 (1522)
T TIGR00957 548 VCTP-FLVALITFAVYV---TVDENNILDAEKAFVSLA----LFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEEL 619 (1522)
T ss_pred HHHH-HHHHHHHHHHHH---HhcCCCCcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 1011 111111111111 001112333333333332 22334467888888889999999999999999975533
Q ss_pred cccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccE
Q 001329 423 LSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501 (1099)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~ 501 (1099)
.... .... .......+.|+++|++|.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 620 ~~~~---~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~ 694 (1522)
T TIGR00957 620 EPDS---IERR--TIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 694 (1522)
T ss_pred cccc---cccc--ccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcE
Confidence 2110 0000 0000112369999999999753 57999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCC
Q 001329 502 IAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDE 578 (1099)
Q Consensus 502 I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~ 578 (1099)
|.++| +|+||||+|+++++||+|||.++.. .++++..++++.+++.+.++.+|.+.++ +.|.+
T Consensus 695 i~~~g-------~i~yv~Q~~~l~~~Ti~eNI~~g~~-------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~ 760 (1522)
T TIGR00957 695 VHMKG-------SVAYVPQQAWIQNDSLRENILFGKA-------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVN 760 (1522)
T ss_pred EEECC-------EEEEEcCCccccCCcHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCC
Confidence 99987 6999999999999999999999753 2345677788889999888888875443 35789
Q ss_pred cChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 579 LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~-----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||||||||++||||++++|+++|||||||+||+.+++.+.+.+.+ .|+|+|+|||+++.+..+|+|++|+++
T Consensus 761 LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G 837 (1522)
T TIGR00957 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGG 837 (1522)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCC
Confidence 999999999999999999999999999999999999999987742 479999999999999999999999854
No 46
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=100.00 E-value=2.7e-56 Score=498.24 Aligned_cols=278 Identities=29% Similarity=0.475 Sum_probs=270.9
Q ss_pred CCchhhhhcccccCCCceeecCCCeeEehhhHHHHhhHHHHHHHhcCCcchhHHhhcCHHHHHHHHHHHHhhhhhHHHHh
Q 001329 736 RILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIA 815 (1099)
Q Consensus 736 ~~~p~Ra~~lCri~iP~l~s~e~g~lv~c~~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~~~s~~n 815 (1099)
..++.+...+++...|+...++.+.++.+.+++++||+++++++..+|++.++|+++|.+.|.+.++.++++++|++++|
T Consensus 4 ~~flr~f~~L~~~~~~~~~~~~~~ll~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l~ 83 (281)
T PF06472_consen 4 RQFLRRFWRLARIYWPSERWKAWLLLLVLLLLLLARVYLSVRINFWNGDFYNALQQKDLQAFWRLLLLFLLLAIASALLN 83 (281)
T ss_pred hHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHHH
Q 001329 816 PSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWR 895 (1099)
Q Consensus 816 ~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~~~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~ 895 (1099)
+..+|++.+|+++||++||+|+|++||+|++||++.++|+++||||||||+||++||++.++|+.+++||++|++.|++.
T Consensus 84 ~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~ 163 (281)
T PF06472_consen 84 SILKYLRQRLALRWREWLTRHLHDRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVI 163 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCcchHHHHHHHHHHHHHHHhhcCCcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHHHHH
Q 001329 896 MKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELL 975 (1099)
Q Consensus 896 l~~~~g~~g~~~~~~~~~~~~~~lr~~~P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~ 975 (1099)
|++..|..++..+++|+++++.+++.++|||+++++++|++||+||+.|+|+++||||||||+|+++|+..+++.|.+++
T Consensus 164 L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~ 243 (281)
T PF06472_consen 164 LWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALI 243 (281)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhccchhhhhhhhhhee
Q 001329 976 EHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAM 1013 (1099)
Q Consensus 976 ~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~ 1013 (1099)
+|.+.+.++++++++++++++||++.++||.++++|+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~F 281 (281)
T PF06472_consen 244 DNWRRLIRRRLRLGFFTNFYVKYLSSILPYLVVAPPYF 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999998764
No 47
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-52 Score=530.74 Aligned_cols=470 Identities=21% Similarity=0.270 Sum_probs=346.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHH
Q 001329 149 ENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQD 227 (1099)
Q Consensus 149 ~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~ 227 (1099)
.+.+++++..++..+..+.....+.+ ..+++|++.++++.+-|++|||.. .|...+|.+.|++.+...+-..+..
T Consensus 863 vY~~l~~~~~~~~~~rs~~~~~~~l~----aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~ 938 (1381)
T KOG0054|consen 863 VYALLGVASSLLTLLRSFLFAKGGLK----ASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEF 938 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHH
Confidence 34444444333333333444444444 556788899999999999999975 5689999999999988777666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Q 001329 228 DLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQ----LHSRLRTHAESIAFY 303 (1099)
Q Consensus 228 ~l~~il~~i~~~~~L~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~----~~~~~~~~~e~Ik~~ 303 (1099)
++..++..+. +..+..+..|...+.++.+ +++..++.+.+.+..++..+.++..|+ ...+...+..+|++|
T Consensus 939 ~~~~~~~~l~-~~~vi~~~~P~fli~~~pl----~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf 1013 (1381)
T KOG0054|consen 939 FLQSLLNVLG-ILVVISYVTPWFLIAIIPL----GVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAF 1013 (1381)
T ss_pred HHHHHHHHHH-HHHHhhHHhHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeec
Confidence 6655544322 2223334455444333322 222333445555666666666666554 446666688899999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHH
Q 001329 304 GGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHT 383 (1099)
Q Consensus 304 ~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~ 383 (1099)
+.+++..+...++.+...+...-....++|.++-..++..++..+.++++++. .... ...+.+|. .+.|..
T Consensus 1014 ~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~---~~~~-~~~g~vGL-----slsyal 1084 (1381)
T KOG0054|consen 1014 GKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLL---PSGL-ISPGLVGL-----SLSYAL 1084 (1381)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCCC-CCcchHHH-----HHHHHH
Confidence 99999987777777777666655566677777766665433333333333321 1111 11222331 122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC-Cceee
Q 001329 384 SVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVE 462 (1099)
Q Consensus 384 ~~i~~~~~~l~~l~~~~~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~-~~vL~ 462 (1099)
.+.+.+..+......+..-..+.||+.|..+.++| . +... +...+++.++..|.|+|+|++++|.++ .++|+
T Consensus 1085 ----~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E-~-p~~~-~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk 1157 (1381)
T KOG0054|consen 1085 ----QLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE-A-PLEI-EESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLK 1157 (1381)
T ss_pred ----HHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC-C-CCCC-cCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhc
Confidence 23344445555666777788999999999987766 1 1111 111123457788999999999999655 68999
Q ss_pred eeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccC
Q 001329 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1099)
Q Consensus 463 ~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1099)
||||+|+|||+|||||++|||||||+.+|-|+.+|.+|+|.|||.| .++|++++++||||.+|.||+|.|+.-.
T Consensus 1158 ~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf 1237 (1381)
T KOG0054|consen 1158 GISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF 1237 (1381)
T ss_pred CceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc
Confidence 9999999999999999999999999999999999999999999987 5789999999999999999999998632
Q ss_pred CCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcc--c-CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 001329 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE--I-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613 (1099)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~--~-~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~ 613 (1099)
. +.+|++++++|++++|.+++.+.|.+.+ + +.|.++|-||||.+++||||+++++||+|||+|+++|++|
T Consensus 1238 -~------e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~T 1310 (1381)
T KOG0054|consen 1238 -D------EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPET 1310 (1381)
T ss_pred -c------ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHH
Confidence 2 2589999999999999999999886543 3 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 614 EERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 614 ~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
...|++.+++. ++|||.|+||++++-++|||+|||+|
T Consensus 1311 D~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G 1349 (1381)
T KOG0054|consen 1311 DALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAG 1349 (1381)
T ss_pred HHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCC
Confidence 99999999984 99999999999999999999999975
No 48
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.1e-50 Score=459.28 Aligned_cols=494 Identities=20% Similarity=0.216 Sum_probs=339.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 001329 118 TALSNRLAKVQGFLFRAAFLR-RVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKI 196 (1099)
Q Consensus 118 t~ls~~l~~~~~~~~~a~~~~-~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~ 196 (1099)
..+.+..|...=..||.+... +++..+.+ .++++.+.++..+..+++..+-.++-.++...+....|......+.
T Consensus 36 NiL~L~~~lyMLQVyDRVL~S~s~~TLv~L----tvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l 111 (580)
T COG4618 36 NLLALTGPLYMLQVYDRVLPSRSVPTLVML----TVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPL 111 (580)
T ss_pred HHHHHhhhHHHHHHHhhhccCCCcchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH
Confidence 355555666666777777643 34443322 2222222333445566677777777777888887787877754443
Q ss_pred ccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 001329 197 SHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGL---LYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFG 273 (1099)
Q Consensus 197 ~~~~~~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i---~~~~~L~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~ 273 (1099)
.-. ..++ ....-+|.+++.+++.. ..+.+++|.. +|. .+++.++|.+.++.++.+.+++.++..--...+
T Consensus 112 ~~~--~~g~-~~Q~LrDL~qvR~Fltg---~g~~A~fDaPW~P~yl-~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~ 184 (580)
T COG4618 112 LRR--GSGD-GLQPLRDLDQVRQFLTG---TGLTAFFDAPWMPLYL-AVIFLFHPWLGLIALAGAIILVVLALLNERATR 184 (580)
T ss_pred hhc--CCCc-cccchhhHHHHHHHHcC---CCcchhcCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 321 1111 12344588876554432 1233444432 222 233446777777665544433332222111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 274 KLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVIL 353 (1099)
Q Consensus 274 ~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 353 (1099)
+..++..+....-+...+....|+|.|++.|....-.++|.+...............+..++.....+-..+. ..++
T Consensus 185 ~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQ---s~iL 261 (580)
T COG4618 185 KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQ---SAVL 261 (580)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 2223333333334456667777999999999999999888887777766544332222222322332222222 1222
Q ss_pred hhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCC
Q 001329 354 IIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQR 432 (1099)
Q Consensus 354 ~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~ 432 (1099)
. .+.++. .+..|-|. +++.- ..+.....|+-.....|+.+..+..+.+|+.+++...++....
T Consensus 262 g----~GA~Lvi~ge~t~G~--mIA~S----Il~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~------ 325 (580)
T COG4618 262 G----LGAWLVIKGEITPGM--MIAGS----ILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER------ 325 (580)
T ss_pred h----cceeeEEcCcCCcch--hhHHH----HHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC------
Confidence 2 223332 23445553 23211 1234455677778888999999999999999999876543211
Q ss_pred CCCCCCcCCCCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC---
Q 001329 433 NGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--- 508 (1099)
Q Consensus 433 ~~~~~~~~~~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--- 508 (1099)
-..+...+.+.+|++++.-|+. +++++|+||++++||.+||+||||||||||.|+|.|.|+|.+|.|.+||-+
T Consensus 326 ---m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q 402 (580)
T COG4618 326 ---MPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ 402 (580)
T ss_pred ---CCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhc
Confidence 0111235789999999977764 589999999999999999999999999999999999999999999999965
Q ss_pred ---ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccC---CCCCcChH
Q 001329 509 ---SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN---WGDELSLG 582 (1099)
Q Consensus 509 ---~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~---~g~~LSGG 582 (1099)
+++.++|||+|||..+|.|||.|||+-..+ +.+++++.++.+.+|.+|++-++|+++++. .|..||||
T Consensus 403 Wd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~------~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgG 476 (580)
T COG4618 403 WDREQLGRHIGYLPQDVELFDGTIAENIARFGE------EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGG 476 (580)
T ss_pred CCHHHhccccCcCcccceecCCcHHHHHHhccc------cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCch
Confidence 456789999999999999999999984322 257788999999999999999999988874 57899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---HhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l---~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||||+++||||+.+|.+++||||-|+||.+.|+.+.+.+ ++.|.|+|+||||++.+..+|+|++|+++
T Consensus 477 QRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G 547 (580)
T COG4618 477 QRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDG 547 (580)
T ss_pred HHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCC
Confidence 999999999999999999999999999999999998876 45799999999999999999999999865
No 49
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-52 Score=459.13 Aligned_cols=445 Identities=18% Similarity=0.227 Sum_probs=318.8
Q ss_pred HHHHHHHHHHhhhhccccccccCCCCChhHH----HHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 001329 179 VTKLIHTRYFENMAYYKISHVDGRITHPEQR----LASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWI 254 (1099)
Q Consensus 179 L~~~l~~~~f~~l~~~~~~~~~~~~~n~~~R----it~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~~l~l~i 254 (1099)
..+.+.-+.|.|+..+++.|+-++.+.+.+| =+.-++. .+..++...+..++........++...+|..+++.
T Consensus 13 a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~---i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t 89 (497)
T COG5265 13 AVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIET---ILRWILFNILPTLVEISLVAVILWRVYGWWFALTT 89 (497)
T ss_pred HHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHH---HHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 3344555678899999988875554444333 3333333 33334444444444443333344445678777776
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 255 LAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWF 334 (1099)
Q Consensus 255 l~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~ 334 (1099)
++.+.+..+++...+-.-....+...+..++.........-|-|++|.|+.|+.|..++++..+...+...+....-.+.
T Consensus 90 ~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~L 169 (497)
T COG5265 90 LVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVL 169 (497)
T ss_pred HHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHH
Confidence 65544433333322211111222222333333333333444889999999999998665555544444332222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 335 GMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIH 414 (1099)
Q Consensus 335 ~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~~~~Ri~ 414 (1099)
.+.+..+. +..........+ -....+.+|+|...+... ++.+...|+..++..++++.+...-.++.+
T Consensus 170 n~gQ~~I~---~~~l~~~m~~s~---~~v~~g~~TvgD~V~~Na------ll~qls~Plnflg~~Yrei~q~ltdme~mf 237 (497)
T COG5265 170 NFGQTAIF---STGLRVMMTMSA---LGVEEGQLTVGDLVNVNA------LLFQLSIPLNFLGFSYREIRQALTDMEKMF 237 (497)
T ss_pred HHhhHHHH---HHHHHHHHhhcH---HHHhhccCCchhHHhHHH------HHhhhhhhhhhhHHHHHHHHHhhhhHHHHH
Confidence 44444332 111111221111 112234567776544332 345666788888889999999999999999
Q ss_pred HHHhhchhcccCCCCCCCCCCCCCc-CCCCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcC
Q 001329 415 ELMVISRELSIEDKSPQRNGSRNYF-SEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 415 ell~~~~e~~~~~~~~~~~~~~~~~-~~~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~G 493 (1099)
++++.+.+..+.+..+ ..+ ...+.+.|+||+|.|...+++|+++||++++|++++||||||+||||++++|.+
T Consensus 238 dLl~~~~~v~d~pda~------~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfR 311 (497)
T COG5265 238 DLLDVEAEVSDAPDAP------PLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFR 311 (497)
T ss_pred HhhccchhhccCCCCc------cccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHH
Confidence 9998877765432211 111 235679999999999888999999999999999999999999999999999999
Q ss_pred cCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcC
Q 001329 494 LWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRY 567 (1099)
Q Consensus 494 l~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~ 567 (1099)
+|++++|.|.+||+| +++|+.||+||||..+|++|+..|+.|+.+. .+++++.++++.+.+++++..+
T Consensus 312 FyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~------at~eev~aaa~~aqi~~fi~~l 385 (497)
T COG5265 312 FYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPD------ATAEEVGAAAEAAQIHDFIQSL 385 (497)
T ss_pred HhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCcc------ccHHHHHHHHHHhhhhHHHHhC
Confidence 999999999999987 5789999999999999999999999998764 6889999999999999999999
Q ss_pred CCCcccC---CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcC
Q 001329 568 PPEKEIN---WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHD 642 (1099)
Q Consensus 568 p~~~~~~---~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D 642 (1099)
|.++++. +|-.|||||||||||||+++++|+|+++||+|||||..+|++++..+++ .|+|.++|+||++++..+|
T Consensus 386 P~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~ad 465 (497)
T COG5265 386 PEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDAD 465 (497)
T ss_pred chhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCc
Confidence 9877653 5778999999999999999999999999999999999999999999986 5999999999999999999
Q ss_pred EEEEEeCC
Q 001329 643 VVLSLDGE 650 (1099)
Q Consensus 643 ~Il~l~~~ 650 (1099)
.|+|++++
T Consensus 466 eiivl~~g 473 (497)
T COG5265 466 EIIVLDNG 473 (497)
T ss_pred eEEEeeCC
Confidence 99999974
No 50
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.5e-46 Score=497.91 Aligned_cols=495 Identities=16% Similarity=0.197 Sum_probs=318.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhH-HHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 110 LVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPL-FFQ-LISENILLC-FLLSTMHSTSKYITGTLSLQFRKIVTKLIHTR 186 (1099)
Q Consensus 110 ~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~-~~~-~l~~~~~l~-~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~ 186 (1099)
..+..++...+....|.+.+.+++.+.....+. ... .++..++++ ++..++.....|....++.++|. .+...
T Consensus 85 ~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~----~L~~~ 160 (1490)
T TIGR01271 85 YGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRI----ALFSL 160 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 333345556677778888888887753211111 111 111111111 11122233445555666666555 45567
Q ss_pred HHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001329 187 YFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMM 265 (1099)
Q Consensus 187 ~f~~l~~~~~~~~~~-~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~~l~l~il~~~~~~~~i~ 265 (1099)
.|+|.++++...+++ ..+...+++++|++++...+..+. .+....+..+++.+.++....| .+++.+++++++..+.
T Consensus 161 iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~-~~~~~pi~i~~~~~lL~~~~G~-~~l~~l~v~~~~~~~~ 238 (1490)
T TIGR01271 161 IYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAH-FVWIAPLQVILLMGLIWELLEV-NGFCGLGFLILLALFQ 238 (1490)
T ss_pred HHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 799999998877765 356889999999999877554332 2222222222222223222222 2333333444444555
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 266 RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345 (1099)
Q Consensus 266 ~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1099)
.++++++.+...+..+...+-.....++..+++.||+|+-|+...+++++.-++-.+..++. .... .+..++. ..
T Consensus 239 ~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~---~~~~-~~~~~~~-~~ 313 (1490)
T TIGR01271 239 ACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKI---AYLR-YFYSSAF-FF 313 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHH-HH
Confidence 56667776666665555555556788888999999999999988654444332222222211 1111 1111111 11
Q ss_pred HHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhchhcc
Q 001329 346 GATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSL-GTLSISSRRLNRLSGYADRIHELMVISRELS 424 (1099)
Q Consensus 346 ~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l-~~l~~~~~~l~~~~~~~~Ri~ell~~~~e~~ 424 (1099)
...++.++.+..| ...+..+++ ..++.+.++.. +..++ ..+...+..+.++..+++||.++++.++...
T Consensus 314 ~~~~~~~~~f~~y----~~~~~~~~~--~~ft~lal~~l----L~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~ 383 (1490)
T TIGR01271 314 SGFFVVFLSVVPY----ALIKGIILR--RIFTTISYCIV----LRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKT 383 (1490)
T ss_pred HHHHHHHHHHHHH----HHhCCCcHH--HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 1111111211111 111112333 23333322221 11233 3466677788889999999999997543211
Q ss_pred cCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCC---------------------------------CCceeeeeeEEEeCC
Q 001329 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT---------------------------------GNVLVENLTLKVEPG 471 (1099)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~---------------------------------~~~vL~~vsl~i~~G 471 (1099)
... . .....++++|++|.|+. .+++|+|+||+|++|
T Consensus 384 ~~~-----~------~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G 452 (1490)
T TIGR01271 384 LEY-----N------LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKG 452 (1490)
T ss_pred ccc-----c------CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCC
Confidence 000 0 01123666666666631 146899999999999
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHH
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i 551 (1099)
|+++|+||||||||||+++|+|+++|++|+|.++| +|+||+|+|+++++||+|||.++... +.++.
T Consensus 453 ~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------~iayv~Q~~~l~~~Ti~eNI~~g~~~-------~~~~~ 518 (1490)
T TIGR01271 453 QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------RISFSPQTSWIMPGTIKDNIIFGLSY-------DEYRY 518 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------EEEEEeCCCccCCccHHHHHHhcccc-------chHHH
Confidence 99999999999999999999999999999999988 59999999999999999999987532 23456
Q ss_pred HHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHh--cC
Q 001329 552 VELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK-VRA--MG 625 (1099)
Q Consensus 552 ~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~-l~~--~g 625 (1099)
.++++.+++.+.++.+|.+..+ +.|.+|||||||||+||||++.+|+++||||||||||+.+++++.+. +.+ .|
T Consensus 519 ~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~ 598 (1490)
T TIGR01271 519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN 598 (1490)
T ss_pred HHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 6778888999999998875443 35789999999999999999999999999999999999999999874 433 48
Q ss_pred cEEEEEccChhHHHhcCEEEEEeCC
Q 001329 626 TSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 626 ~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+|+|+|||+++.+..||+|++|+++
T Consensus 599 ~tvilvtH~~~~~~~ad~ii~l~~g 623 (1490)
T TIGR01271 599 KTRILVTSKLEHLKKADKILLLHEG 623 (1490)
T ss_pred CeEEEEeCChHHHHhCCEEEEEECC
Confidence 9999999999999999999999964
No 51
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1e-45 Score=490.45 Aligned_cols=508 Identities=16% Similarity=0.155 Sum_probs=318.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCF----LLSTMHSTSKYITGTLSLQFRKIVTKL 182 (1099)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~----~~~~~~~~~~yl~~~l~~~~r~~L~~~ 182 (1099)
+++.+++.++..++....|.+.+.+++.+...... ....++ .+++++ +.+++.....|...+.+.++|..
T Consensus 246 ~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~-~~~g~~-l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~---- 319 (1560)
T PTZ00243 246 VWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNAT-WGRGLG-LVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSA---- 319 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 44556666677788888999999999865332221 111111 111111 11222334456666667775554
Q ss_pred HHHHHHhhhhcccccccc---CCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001329 183 IHTRYFENMAYYKISHVD---GRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVL 259 (1099)
Q Consensus 183 l~~~~f~~l~~~~~~~~~---~~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~~l~l~il~~~~ 259 (1099)
+....|+|.++.+...+. ...++..+.+++|++++...+..+. .+....+..++..+.|...+.| .+++.++.++
T Consensus 320 L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~-~l~~~Pl~li~~~~lL~~~lG~-~al~gv~vl~ 397 (1560)
T PTZ00243 320 LNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCM-YLWSSPMVLLLSILLLSRLVGW-CALMAVAVLL 397 (1560)
T ss_pred HHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHH
Confidence 456668888887765543 2346778899999999877654332 2223332222222222222233 2333333333
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 260 GAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQD 339 (1099)
Q Consensus 260 ~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~ 339 (1099)
+...+..++.++..+...+..+....-.....++..+++.||+++-|+...+++++.-++-.+..++. ..... +..
T Consensus 398 v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~---~~~~~-~~~ 473 (1560)
T PTZ00243 398 VTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDV---QLARV-ATS 473 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHH
Confidence 33334445555555554444444443345678888899999999999988765554332222222211 11111 111
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001329 340 FLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVI 419 (1099)
Q Consensus 340 ~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~~~~Ri~ell~~ 419 (1099)
++.......+ .++.+..|. ...+..+.| .+++.+. ++..+..|+..+...+..+.++..+++||.++++.
T Consensus 474 ~~~~~~p~l~-~~~~f~~y~---~~g~~Lt~~--~vft~la----L~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~ 543 (1560)
T PTZ00243 474 FVNNATPTLM-IAVVFTVYY---LLGHELTPE--VVFPTIA----LLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLEC 543 (1560)
T ss_pred HHHHHHHHHH-HHHHHHHHH---HhCCCCCHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1111111111 111111111 111223443 3344332 23334457777777888899999999999999975
Q ss_pred chhcc-------cC-----CCCC--C-----CCC---------------------------------CCCCcCCCCcEEE
Q 001329 420 SRELS-------IE-----DKSP--Q-----RNG---------------------------------SRNYFSEANYIEF 447 (1099)
Q Consensus 420 ~~e~~-------~~-----~~~~--~-----~~~---------------------------------~~~~~~~~~~I~~ 447 (1099)
++... .. .... . .+. ........+.+.+
T Consensus 544 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1560)
T PTZ00243 544 DNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVV 623 (1560)
T ss_pred ccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccc
Confidence 43100 00 0000 0 000 0000001124566
Q ss_pred EeeEEEcC---------------------------------------CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHH
Q 001329 448 SGVKVVTP---------------------------------------TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLF 488 (1099)
Q Consensus 448 ~~v~~~y~---------------------------------------~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl 488 (1099)
+|+++.++ +++++|+|+||+|++||+++|+||||||||||+
T Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL 703 (1560)
T PTZ00243 624 EDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLL 703 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHH
Confidence 66655421 234689999999999999999999999999999
Q ss_pred HHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCC
Q 001329 489 RVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568 (1099)
Q Consensus 489 ~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p 568 (1099)
++|+|+++|++|+|.+++ +|+|+||+|+++++|++|||.++.. .+.++..++++.+++++.++.+|
T Consensus 704 ~~i~G~~~~~~G~i~~~~-------~i~yv~Q~~~l~~~Tv~enI~~~~~-------~~~~~~~~~~~~~~l~~~l~~l~ 769 (1560)
T PTZ00243 704 QSLLSQFEISEGRVWAER-------SIAYVPQQAWIMNATVRGNILFFDE-------EDAARLADAVRVSQLEADLAQLG 769 (1560)
T ss_pred HHHhcCCCCCCcEEEECC-------eEEEEeCCCccCCCcHHHHHHcCCh-------hhHHHHHHHHHHhhhHHHHHHhh
Confidence 999999999999998753 7999999999999999999998642 23456777888889999898888
Q ss_pred CCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-H--hcCcEEEEEccChhHHHhcC
Q 001329 569 PEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-R--AMGTSCITISHRPALVAFHD 642 (1099)
Q Consensus 569 ~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l-~--~~g~TvI~ItH~l~~i~~~D 642 (1099)
.+..+ ..|.+|||||||||+||||++.+|+++|||||||+||+.+++.+.+.+ . ..|+|+|+|||+++.+..+|
T Consensus 770 ~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad 849 (1560)
T PTZ00243 770 GGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRAD 849 (1560)
T ss_pred ccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCC
Confidence 65443 357899999999999999999999999999999999999988876532 2 24899999999999999999
Q ss_pred EEEEEeCC
Q 001329 643 VVLSLDGE 650 (1099)
Q Consensus 643 ~Il~l~~~ 650 (1099)
+|++|+++
T Consensus 850 ~ii~l~~G 857 (1560)
T PTZ00243 850 YVVALGDG 857 (1560)
T ss_pred EEEEEECC
Confidence 99999864
No 52
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-52 Score=455.29 Aligned_cols=272 Identities=27% Similarity=0.347 Sum_probs=232.8
Q ss_pred EEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-C----CccEEEeCCCC------c-
Q 001329 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-L----VSGHIAKPGVG------S- 509 (1099)
Q Consensus 445 I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-p----~~G~I~i~g~~------~- 509 (1099)
++++|++++|+.+ .++++||||+|++||++||||+|||||||+.++|+|+.+ | .+|+|.++|.+ +
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 6899999998753 379999999999999999999999999999999999998 4 57999999985 1
Q ss_pred --ccc-ccEEEEecCCCC---CcccHHHHhccCCCCCCcC--CcCCHHHHHHHHHhcCChh---HHhcCCCCcccCCCCC
Q 001329 510 --DLN-KEIFYVPQRPYT---AVGTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDE 578 (1099)
Q Consensus 510 --~~r-~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~---~~~~~p~~~~~~~g~~ 578 (1099)
++| ++|+||||||.. +..||.+++......+... .++..+++.++|+.+|+.+ .++.||+ +
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPh--------e 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPH--------E 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCc--------c
Confidence 233 689999999963 4469999998766544321 2234567899999999974 6789997 9
Q ss_pred cChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCce
Q 001329 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEW 653 (1099)
Q Consensus 579 LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~ 653 (1099)
|||||||||.||.|++.+|++||+||||+|||+.+++++++++++ .|.|+|+||||++++. .||+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~-------- 225 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVA-------- 225 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEE--------
Confidence 999999999999999999999999999999999999999887753 5999999999999886 578877
Q ss_pred EEeecCCCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCCCCCCCCCCCCCCCCCC
Q 001329 654 RVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQLKS 733 (1099)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~~~~~~~~~~~~ 733 (1099)
|||+|+++|.++.++++++ |+||||++|+++.|.. ..++..+||.+|
T Consensus 226 ------------------------------VMYaG~iVE~g~~~~i~~~-P~HPYT~~Ll~s~P~~--~~~l~~ipG~~p 272 (316)
T COG0444 226 ------------------------------VMYAGRIVEEGPVEEIFKN-PKHPYTRGLLNSLPRL--GERLPPIPGSPP 272 (316)
T ss_pred ------------------------------EEECcEEEEeCCHHHHhcC-CCChHHHHHHHhCccc--cCCcCCCCCCCC
Confidence 6788999999999999996 8999999999999987 556778999999
Q ss_pred CCCCchh---------hhhcccccCCCceeecCCCeeEehh
Q 001329 734 APRILPL---------RVADMFKVLVPTVFDKQGAQLLAVA 765 (1099)
Q Consensus 734 ~~~~~p~---------Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1099)
+..++|+ .+.+.|+...|++.....+|.++|-
T Consensus 273 ~l~~~p~GC~F~pRC~~a~~~c~~~~P~~~~~~~~~~~~c~ 313 (316)
T COG0444 273 SLLNPPKGCRFHPRCPYAMERCREEEPPLRELGGGHKVRCW 313 (316)
T ss_pred cccCCCCCCccccccchhHhhcccCCCCccccCCCeeeecc
Confidence 9888773 4888999998987655667999884
No 53
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-50 Score=416.05 Aligned_cols=224 Identities=26% Similarity=0.355 Sum_probs=193.6
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i~ 516 (1099)
.|+++||+++|. +..+|+|||++|++||.++|+||||||||||+|+|.||.+|++|+|.++|.+ ..+|+++|
T Consensus 2 mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 589999999994 6789999999999999999999999999999999999999999999999953 34789999
Q ss_pred EEecCCCCCc-ccHHHHhccCCCC-CCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 517 YVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~-~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
+|||+..+|+ .|+.||+.++... .+....+..+...+.|+++||.+..+.||. +|||||||||||||||+
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~--------qLSGGQqQRVAIARALa 152 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA--------QLSGGQQQRVAIARALA 152 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc--------ccCcHHHHHHHHHHHHc
Confidence 9999999875 7999999986432 222233456678889999999999999995 99999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHHh-cCEEEEEeCCCceEEeecCCCccccccccc
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAF-HDVVLSLDGEGEWRVHDKRDGSSVVTKSGI 670 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~~~~~~~~~~~~~~~~~~~ 670 (1099)
.+|+++++|||||||||+...++++.++ +.|.|.|+|||.+..++. +|||++||++
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G-------------------- 212 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQG-------------------- 212 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCC--------------------
Confidence 9999999999999999999999876654 569999999999999975 7999999864
Q ss_pred cccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhc
Q 001329 671 NMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAA 715 (1099)
Q Consensus 671 ~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~ 715 (1099)
.++|.++.++.|.+ |.||.|+.-++.
T Consensus 213 ------------------~iie~g~p~~~f~~-p~~~R~~~FL~~ 238 (240)
T COG1126 213 ------------------KIIEEGPPEEFFDN-PKSERTRQFLSK 238 (240)
T ss_pred ------------------EEEEecCHHHHhcC-CCCHHHHHHHHh
Confidence 23344556677764 899999988764
No 54
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-49 Score=418.60 Aligned_cols=228 Identities=32% Similarity=0.449 Sum_probs=199.1
Q ss_pred cEEEEeeEEEcCCCC---ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccc
Q 001329 444 YIEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNK 513 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~---~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~ 513 (1099)
.++++|+++.|+.++ ++++||||+|.+||++||+||||||||||.|+|+|+.+|++|+|.++|.. ...++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 689999999997665 69999999999999999999999999999999999999999999999964 23578
Q ss_pred cEEEEecCCCC---CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001329 514 EIFYVPQRPYT---AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1099)
Q Consensus 514 ~i~~v~Q~p~l---~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1099)
.|.+|||||+- |..||++.|..|...++.. ...+++.++++.+||. ++++++|+ +|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~--~~~~~i~~~L~~VgL~~~~l~R~P~--------eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLS--KSQQRIAELLDQVGLPPSFLDRRPH--------ELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCcc--HHHHHHHHHHHHcCCCHHHHhcCch--------hcChhHHHHHHH
Confidence 89999999984 4579999999887654322 2345699999999996 78999996 899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHHHh-cCEEEEEeCCCceEEeecCCCccc
Q 001329 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVAF-HDVVLSLDGEGEWRVHDKRDGSSV 664 (1099)
Q Consensus 590 ARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~~~~~~~~~~~~~ 664 (1099)
||||..+|++||||||||+||+..++++++++. +.+.|+|+||||++.+.+ ||||++|++
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~--------------- 217 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDN--------------- 217 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeC---------------
Confidence 999999999999999999999999999988764 358999999999999975 899997775
Q ss_pred cccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCCCCC
Q 001329 665 VTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIAD 720 (1099)
Q Consensus 665 ~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~ 720 (1099)
|+++|..++.+++.+ |.||||+.|++++|...
T Consensus 218 -----------------------G~ivE~~~~~~l~~~-~~h~ytr~Ll~a~~~~~ 249 (252)
T COG1124 218 -----------------------GQIVEIGPTEELLSH-PSHPYTRELLEAVPSID 249 (252)
T ss_pred -----------------------CeEEEeechhhhhcC-CccHHHHHHHHhhhccc
Confidence 445666777787776 99999999999998754
No 55
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-49 Score=427.83 Aligned_cols=227 Identities=26% Similarity=0.356 Sum_probs=203.2
Q ss_pred cEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC---------cc
Q 001329 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SD 510 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~----~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~ 510 (1099)
+|++++|++.|+.+ ..+|+||||+|++||++||+|.||+|||||+|+|.+|..|++|+|.++|.+ ..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 48999999999752 469999999999999999999999999999999999999999999999965 24
Q ss_pred ccccEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001329 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1099)
Q Consensus 511 ~r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1099)
.|++|||+||++.++. .||.+|++||+...+..+....+++.++|+.+||++..++||. +|||||||||+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~--------qLSGGQKQRVaI 152 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPA--------QLSGGQKQRVAI 152 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCch--------hcCcchhhHHHH
Confidence 6889999999998876 8999999999887665444566789999999999999999994 999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCceEEeecCCCccc
Q 001329 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKRDGSSV 664 (1099)
Q Consensus 590 ARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~~~~~~~~~ 664 (1099)
||||+.+|+||++|||||||||++.+.|+++|++ .|.|+++|||.++.++ .|||+.+|++
T Consensus 153 ARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~--------------- 217 (339)
T COG1135 153 ARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQ--------------- 217 (339)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeC---------------
Confidence 9999999999999999999999999999988764 5999999999999997 5899998875
Q ss_pred cccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCC
Q 001329 665 VTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP 717 (1099)
Q Consensus 665 ~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p 717 (1099)
|+++|.++..++|.+ |+|+-|++++...-
T Consensus 218 -----------------------G~lvE~G~v~~vF~~-Pk~~~t~~fi~~~~ 246 (339)
T COG1135 218 -----------------------GRLVEEGTVSEVFAN-PKHAITQEFIGETL 246 (339)
T ss_pred -----------------------CEEEEeccHHHhhcC-cchHHHHHHHHhhc
Confidence 455667788889885 89999999998554
No 56
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.5e-43 Score=444.17 Aligned_cols=502 Identities=17% Similarity=0.221 Sum_probs=318.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcChhHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 001329 118 TALSNRLAKVQGFLFRAAFLRRVPLFFQLIS-ENILLC-FLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYK 195 (1099)
Q Consensus 118 t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~-~~~~l~-~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~ 195 (1099)
..+....|.+...+++.+.....+.....+. ..++++ ++-+++..-..|....++.++|..+. ...|+|.+++.
T Consensus 214 ~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~----~~IY~K~L~ls 289 (1381)
T KOG0054|consen 214 DLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALI----SAIYRKALRLS 289 (1381)
T ss_pred HHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHH----HHHHHhhhcCc
Confidence 3345567788888887766542221111111 111111 11223333445667778888777654 46688888877
Q ss_pred cccc-cCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHhHH
Q 001329 196 ISHV-DGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYV---FWILAYVLGAGTMMRNFSPA 271 (1099)
Q Consensus 196 ~~~~-~~~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~~l~---l~il~~~~~~~~i~~~~~~~ 271 (1099)
-... +...++..+=++.|++++.+....+-..+..++ ..++..+.++..+.|... +++++++|+-. ++++.
T Consensus 290 ~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Pl-qi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~----~~a~~ 364 (1381)
T KOG0054|consen 290 NSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPL-QIILALYLLYGLLGPSALAGVAVMVLLIPLNS----FLAKK 364 (1381)
T ss_pred hhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH----HHHHH
Confidence 6544 334668888999999998765543322222221 111111111111122111 12222333333 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 272 FGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAV 351 (1099)
Q Consensus 272 ~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1099)
..+...+..+...+--...+|+..+++.||+|+=|+...+++++ +.+...+..+.......+..++..... .++.
T Consensus 365 ~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~----~R~~El~~lrk~~~~~~~~~~~~~~~p-~lv~ 439 (1381)
T KOG0054|consen 365 IAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIED----LRQKELKLLRKSAYLSALNSFLNFFSP-VLVS 439 (1381)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 44444443333333235678899999999999988777644433 332222221111111111111110111 1111
Q ss_pred HHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCC
Q 001329 352 ILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQ 431 (1099)
Q Consensus 352 il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~ 431 (1099)
++....+.. ...+..+.. .+ +..+ +++..+-.|+..+...+..+.++..+.+|+.+++..++...... .
T Consensus 440 ~~tF~~~v~--~~~~~lt~~-~a-F~sl----alfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~-~-- 508 (1381)
T KOG0054|consen 440 VVTFVVFVL--LLGNLLTAS-TA-FTSL----ALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSV-E-- 508 (1381)
T ss_pred HHHHHHHhh--ccCccccHh-HH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccc-c--
Confidence 111111110 101111211 11 2211 22333345666677778888889999999999997543222111 0
Q ss_pred CCCCCCCcCCCCcEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc
Q 001329 432 RNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS 509 (1099)
Q Consensus 432 ~~~~~~~~~~~~~I~~~~v~~~y~~--~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~ 509 (1099)
. .........++++|.++.+.+ ..+.|+||||+|++|+.+||||+.|||||||+.+|+|..+..+|++.++|
T Consensus 509 ~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g--- 582 (1381)
T KOG0054|consen 509 R---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG--- 582 (1381)
T ss_pred c---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC---
Confidence 0 011122457999999998864 34599999999999999999999999999999999999999999999998
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQR 586 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQR 586 (1099)
.++||||.||++++||||||.||.+ .++++-.++++.++|.+.++-+|.+..+ ++|.+||||||||
T Consensus 583 ----siaYv~Q~pWI~ngTvreNILFG~~-------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqR 651 (1381)
T KOG0054|consen 583 ----SVAYVPQQPWIQNGTVRENILFGSP-------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQR 651 (1381)
T ss_pred ----eEEEeccccHhhCCcHHHhhhcCcc-------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHH
Confidence 5999999999999999999999975 4677888999999999999999976554 4688999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCCCceEEeecCCCcc
Q 001329 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSS 663 (1099)
Q Consensus 587 laIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~~~~~~~~~~~ 663 (1099)
|++|||+++++||++||+|.||+|.++.+++++..-. .++|+|++||.++.++++|.|++|++| .+.++|+..+
T Consensus 652 IsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G---~I~~~Gty~e 728 (1381)
T KOG0054|consen 652 ISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDG---KIVESGTYEE 728 (1381)
T ss_pred HHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCC---eEecccCHHH
Confidence 9999999999999999999999999999998875432 389999999999999999999999974 3444444433
Q ss_pred c
Q 001329 664 V 664 (1099)
Q Consensus 664 ~ 664 (1099)
+
T Consensus 729 l 729 (1381)
T KOG0054|consen 729 L 729 (1381)
T ss_pred H
Confidence 3
No 57
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.8e-46 Score=427.60 Aligned_cols=274 Identities=25% Similarity=0.330 Sum_probs=218.5
Q ss_pred CcEEEEeeEEEcCC------------CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c
Q 001329 443 NYIEFSGVKVVTPT------------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~------------~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~ 509 (1099)
..|+++||++.|+. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 47999999999963 2469999999999999999999999999999999999999999999999965 1
Q ss_pred --------cccccEEEEecCCC--CC-cccHHHHhccCCCCCC--cCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCC
Q 001329 510 --------DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQ--EVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINW 575 (1099)
Q Consensus 510 --------~~r~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~~--~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~ 575 (1099)
.++++|+||||+|. ++ ..|+.|||.++...+. .......+.+.++++.+++. +..+++|+
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~------ 160 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPH------ 160 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcc------
Confidence 24678999999983 44 5799999987532211 11112345677899999994 67788885
Q ss_pred CCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|||||||||+|||||+.+|++||+||||++||+.++.++.+++++ .|.|+|+||||++.+. .||+|++|+++
T Consensus 161 --~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G 238 (331)
T PRK15079 161 --EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLG 238 (331)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 8999999999999999999999999999999999999998887754 3899999999999986 59999988753
Q ss_pred CceEEeecCCCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCCCCCCC----CCCC
Q 001329 651 GEWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN----VPLP 726 (1099)
Q Consensus 651 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~----~~~~ 726 (1099)
+++|.++.++++.+ |.||||++|+++.|..++. ....
T Consensus 239 --------------------------------------~ive~g~~~~i~~~-~~~py~~~l~~~~~~~~~~~~~~~~~~ 279 (331)
T PRK15079 239 --------------------------------------HAVELGTYDEVYHN-PLHPYTKALMSAVPIPDPDLERNKTIQ 279 (331)
T ss_pred --------------------------------------EEEEEcCHHHHHcC-CCCHHHHHHHhhCCCcccccccccccc
Confidence 23334455566664 8999999999999964321 1223
Q ss_pred CCCCCCCCCCCch------h---hhhcccccCCCceeecCCCeeEeh
Q 001329 727 VFPQLKSAPRILP------L---RVADMFKVLVPTVFDKQGAQLLAV 764 (1099)
Q Consensus 727 ~~~~~~~~~~~~p------~---Ra~~lCri~iP~l~s~e~g~lv~c 764 (1099)
.++|.+|...+.+ + .+.+.|+...|++.. ..+|.++|
T Consensus 280 ~~~g~~p~~~~~~~gc~f~~rc~~~~~~c~~~~p~~~~-~~~~~~~C 325 (331)
T PRK15079 280 LLEGELPSPINPPSGCVFRTRCPIAGPECAKTRPVLEG-SFRHAVSC 325 (331)
T ss_pred cCCCCCCCCcCCCCCCCCCCCCcchhhhhccCCCCcEe-CCCeEEEE
Confidence 4566666555433 2 378899999998875 66888888
No 58
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-46 Score=425.36 Aligned_cols=274 Identities=22% Similarity=0.305 Sum_probs=219.0
Q ss_pred CcEEEEeeEEEcCC---------CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----
Q 001329 443 NYIEFSGVKVVTPT---------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----- 508 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~---------~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----- 508 (1099)
..|+++||++.|+. ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 46899999999963 2479999999999999999999999999999999999999999999999964
Q ss_pred ----ccccccEEEEecCCC--C-CcccHHHHhccCCCCCC-cCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCc
Q 001329 509 ----SDLNKEIFYVPQRPY--T-AVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDEL 579 (1099)
Q Consensus 509 ----~~~r~~i~~v~Q~p~--l-~~~Ti~eni~~~~~~~~-~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~L 579 (1099)
..+|++|+||||+|. + +..|+.+|+.++...+. .......+++.++++.+|+. +..+++|+ +|
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~--------~L 155 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPH--------MF 155 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCc--------cC
Confidence 124678999999994 3 34699999875432211 11112345788999999996 57788885 89
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCceE
Q 001329 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWR 654 (1099)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~ 654 (1099)
|||||||++|||||+.+|++||+||||++||+.++.++++++++ .|.|+|+||||++.+. .||+|++|+++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G---- 231 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLG---- 231 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC----
Confidence 99999999999999999999999999999999999999887754 4899999999999996 69999988643
Q ss_pred EeecCCCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCCCCCCC--CCCCCCCCCC
Q 001329 655 VHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN--VPLPVFPQLK 732 (1099)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~--~~~~~~~~~~ 732 (1099)
+++|.++.++++. .|.||||+.|+++.|..+.. .....++|.+
T Consensus 232 ----------------------------------~ive~g~~~~~~~-~p~hpyt~~ll~~~p~~~~~~~~~~~~~~~~~ 276 (327)
T PRK11308 232 ----------------------------------RCVEKGTKEQIFN-NPRHPYTQALLSATPRLNPDDRRERIKLTGEL 276 (327)
T ss_pred ----------------------------------EEEEECCHHHHhc-CCCCHHHHHHHHhCCCcCcccccccccCCCCC
Confidence 3445556666666 48999999999999975321 1122456666
Q ss_pred CCCCCch------h---hhhcccccCCCceeecCCCeeEeh
Q 001329 733 SAPRILP------L---RVADMFKVLVPTVFDKQGAQLLAV 764 (1099)
Q Consensus 733 ~~~~~~p------~---Ra~~lCri~iP~l~s~e~g~lv~c 764 (1099)
|...+.+ + .+.+.|+...|++... ++|.++|
T Consensus 277 ~~~~~~~~gc~f~~rc~~~~~~c~~~~p~~~~~-~~~~~~c 316 (327)
T PRK11308 277 PSPLNPPPGCAFNARCPRAFGRCRQEQPQLRDY-DGRLVAC 316 (327)
T ss_pred CCCcCCCCCCCCCCCCcchhhccccCCCCcEec-CCeEEEe
Confidence 6655443 2 3788999988988776 5788888
No 59
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-46 Score=393.69 Aligned_cols=199 Identities=28% Similarity=0.365 Sum_probs=177.1
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-ccccccEEEEecCC
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRP 522 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~~r~~i~~v~Q~p 522 (1099)
.+++++|++.|.+ ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.. ..-..+++||||++
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 5899999999964 789999999999999999999999999999999999999999999999965 34456899999999
Q ss_pred CCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001329 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1099)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1099)
.+++ .|+.||+.++.........+..+++.++++.+||.++.+++|+ +|||||||||||||||+.+|++|+
T Consensus 82 ~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~--------qLSGGMrQRVaiARAL~~~P~lLL 153 (248)
T COG1116 82 ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH--------QLSGGMRQRVAIARALATRPKLLL 153 (248)
T ss_pred cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc--------ccChHHHHHHHHHHHHhcCCCEEE
Confidence 8765 6999999999876443334456689999999999999999996 999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001329 602 LDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1099)
Q Consensus 602 LDEpTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1099)
||||++|||..|+..+++.+ ++.++|+++||||.+.+- -+|||++|.++.
T Consensus 154 lDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P 208 (248)
T COG1116 154 LDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRP 208 (248)
T ss_pred EcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCC
Confidence 99999999999998876644 557999999999999765 589999998863
No 60
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-45 Score=421.03 Aligned_cols=274 Identities=21% Similarity=0.258 Sum_probs=215.3
Q ss_pred cEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc----CCccEEEeCCCC------cc
Q 001329 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----LVSGHIAKPGVG------SD 510 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~----p~~G~I~i~g~~------~~ 510 (1099)
.|+++||++.|+.+ .++|+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ .+
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 48999999999653 369999999999999999999999999999999999998 489999999965 11
Q ss_pred ---c-cccEEEEecCCC--C-CcccHHHHhccCCCCC-CcCCcCCHHHHHHHHHhcCChh---HHhcCCCCcccCCCCCc
Q 001329 511 ---L-NKEIFYVPQRPY--T-AVGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDEL 579 (1099)
Q Consensus 511 ---~-r~~i~~v~Q~p~--l-~~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~l~~---~~~~~p~~~~~~~g~~L 579 (1099)
+ ++.|+||||+|. + +..|+.+++..+...+ ........+++.++++.+|+.+ ..+++|+ +|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~--------~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPH--------QL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCch--------hC
Confidence 1 247999999995 2 3458887776543221 1111233567889999999964 5677774 89
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCceE
Q 001329 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWR 654 (1099)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~ 654 (1099)
||||||||+|||||+.+|++||+||||++||+.++.++++.+++ .|.|+|+||||++.+. .+|+|++|.++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G---- 230 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAG---- 230 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC----
Confidence 99999999999999999999999999999999999999887654 4899999999999884 69999988753
Q ss_pred EeecCCCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCCCCCCC-CCCCCCCCCCC
Q 001329 655 VHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN-VPLPVFPQLKS 733 (1099)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~-~~~~~~~~~~~ 733 (1099)
+++|.++.++++. .|.||||++|+++.|..+.. ..+..++|.+|
T Consensus 231 ----------------------------------~ive~g~~~~~~~-~p~hpyt~~ll~~~~~~~~~~~~~~~~~g~~~ 275 (326)
T PRK11022 231 ----------------------------------QVVETGKAHDIFR-APRHPYTQALLRALPEFAQDKARLASLPGVVP 275 (326)
T ss_pred ----------------------------------EEEEECCHHHHhh-CCCChHHHHHHHhCccccccccccccCCCCCC
Confidence 3344455556666 48999999999999975422 23445677766
Q ss_pred CCCCch------h---hhhcccccCCCceeecCCCeeEehh
Q 001329 734 APRILP------L---RVADMFKVLVPTVFDKQGAQLLAVA 765 (1099)
Q Consensus 734 ~~~~~p------~---Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1099)
...+.+ + .+.+.|+...|++...+ +|.++|-
T Consensus 276 ~~~~~~~gc~~~~rc~~~~~~c~~~~p~~~~~~-~~~~~c~ 315 (326)
T PRK11022 276 GKYDRPNGCLLNPRCPYATDRCRAEEPALNMLA-GRQSKCH 315 (326)
T ss_pred CCcCCCCCCCCCCCCcchhhccccCCCCcEeeC-CEEEEee
Confidence 654433 2 47889999999987765 7888883
No 61
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-46 Score=400.35 Aligned_cols=233 Identities=26% Similarity=0.414 Sum_probs=198.4
Q ss_pred CcEEEEeeEEEcCCC--------CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-ccccc
Q 001329 443 NYIEFSGVKVVTPTG--------NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNK 513 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~--------~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~~r~ 513 (1099)
..++++|++++|+.+ ..+++||||+|++||+++|||+|||||||+.|+|+||++|++|+|.++|.+ ..+.
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 368999999998743 279999999999999999999999999999999999999999999999965 1111
Q ss_pred cEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001329 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1099)
Q Consensus 514 ~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1099)
.....+++.++|+.+|+. +++.++|+ +|||||+||++||||
T Consensus 82 ------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPh--------elSGGQrQRi~IARA 123 (268)
T COG4608 82 ------------------------------KEERRERVLELLEKVGLPEEFLYRYPH--------ELSGGQRQRIGIARA 123 (268)
T ss_pred ------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCc--------ccCchhhhhHHHHHH
Confidence 113456799999999996 58999997 899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHh-cCEEEEEeCCCceEEeecCCCcccccc
Q 001329 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAF-HDVVLSLDGEGEWRVHDKRDGSSVVTK 667 (1099)
Q Consensus 593 L~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~~~~~~~~~~~~~~~~ 667 (1099)
|+.+|+++++|||||+||...++++.+++++ .|.|+++||||++.+++ +|+|.
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~---------------------- 181 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIA---------------------- 181 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEE----------------------
Confidence 9999999999999999999999998887653 59999999999999986 56555
Q ss_pred ccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCCCCCCCCC---CCCCCCCCCCCCCchh----
Q 001329 668 SGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVP---LPVFPQLKSAPRILPL---- 740 (1099)
Q Consensus 668 ~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~~~---~~~~~~~~~~~~~~p~---- 740 (1099)
+||.|+++|.+++++++. +|.||||++|+++.|..++... .....|+.|++.++|.
T Consensus 182 ----------------VMy~G~iVE~g~~~~~~~-~p~HpYTk~Ll~a~p~~~p~~~~~~~~~~~ge~p~~~~~p~gC~f 244 (268)
T COG4608 182 ----------------VMYLGKIVEIGPTEEVFS-NPLHPYTKALLSAVPVPDPRLRRKRRIPLEGEVPSPINPPSGCRF 244 (268)
T ss_pred ----------------EEecCceeEecCHHHHhh-CCCCHHHHHHHHhCCccchhhhhhhhhhhccCCCCCCcCCcCCcc
Confidence 778899999999999998 5999999999999998765321 2345677777776662
Q ss_pred -----hhhcccccCCCce
Q 001329 741 -----RVADMFKVLVPTV 753 (1099)
Q Consensus 741 -----Ra~~lCri~iP~l 753 (1099)
.+++.|+...|.+
T Consensus 245 ~~RCp~a~~~c~~~~p~~ 262 (268)
T COG4608 245 HPRCPYAMEICRKEEPEL 262 (268)
T ss_pred cCCcchhhhhhcccCCch
Confidence 4778899998886
No 62
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.4e-45 Score=418.43 Aligned_cols=275 Identities=23% Similarity=0.303 Sum_probs=216.2
Q ss_pred CcEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCC---ccEEEeCCCC------cc
Q 001329 443 NYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVG------SD 510 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~---~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g~~------~~ 510 (1099)
..++++||++.|+. ..++++||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+ .+
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 47999999999963 247999999999999999999999999999999999999996 9999999965 11
Q ss_pred ---cc-ccEEEEecCCC--C-CcccHHHHhccCCCCCCc-CCcCCHHHHHHHHHhcCChh---HHhcCCCCcccCCCCCc
Q 001329 511 ---LN-KEIFYVPQRPY--T-AVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDEL 579 (1099)
Q Consensus 511 ---~r-~~i~~v~Q~p~--l-~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~---~~~~~p~~~~~~~g~~L 579 (1099)
+| ++|+||||+|. + +..|+.+|+.++...+.. ......+++.++++.+++.+ .++++|+ +|
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~--------~L 162 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPH--------EF 162 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcc--------cC
Confidence 23 47999999984 3 346898888754322211 11122356788999999964 3466774 89
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCceE
Q 001329 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWR 654 (1099)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~ 654 (1099)
|||||||++|||||+.+|++||+||||++||+.++.++.+++++ .|.|+|+||||++.+. .+|+|++|.+
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~----- 237 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYA----- 237 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEEC-----
Confidence 99999999999999999999999999999999999998887653 3899999999999986 6899998864
Q ss_pred EeecCCCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCCCCCC-CCCCCCCCCCCC
Q 001329 655 VHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADH-NVPLPVFPQLKS 733 (1099)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~-~~~~~~~~~~~~ 733 (1099)
|+++|.++.+++++ .|.||||++|+++.|..++ ...+..++|.+|
T Consensus 238 ---------------------------------G~ive~g~~~~i~~-~p~~pyt~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (330)
T PRK09473 238 ---------------------------------GRTMEYGNARDVFY-QPSHPYSIGLLNAVPRLDAEGESLLTIPGNPP 283 (330)
T ss_pred ---------------------------------CEEEEECCHHHHHh-CCCCHHHHHHHHhCCCccccccccccCCCCCC
Confidence 33445566667776 4899999999999986432 122334566666
Q ss_pred CCCCch---------hhhhcccccCCCceeecCCCeeEehh
Q 001329 734 APRILP---------LRVADMFKVLVPTVFDKQGAQLLAVA 765 (1099)
Q Consensus 734 ~~~~~p---------~Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1099)
+..+.+ +.+.+.| ...|++...+.+|.++|-
T Consensus 284 ~~~~~~~gc~f~~rc~~~~~~c-~~~p~~~~~~~~~~v~c~ 323 (330)
T PRK09473 284 NLLRLPKGCPFQPRCPHAMEIC-SSAPPLEEFGPGRLRACF 323 (330)
T ss_pred CccCCCCCCCCCCCCchhhhhh-cCCCCceEcCCCeEEEee
Confidence 554443 2478889 677888888888999884
No 63
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.7e-45 Score=430.07 Aligned_cols=233 Identities=30% Similarity=0.436 Sum_probs=201.8
Q ss_pred CCcEEEEeeEEEcCC------C----CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC---
Q 001329 442 ANYIEFSGVKVVTPT------G----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--- 508 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~------~----~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--- 508 (1099)
.+.++++||+++|.. + ..+++||||++.+||++||||+||||||||.|+|+|+.+|++|+|.++|.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 457899999999973 1 368999999999999999999999999999999999999999999999965
Q ss_pred -----ccccccEEEEecCCCC---CcccHHHHhccCCCCCCcC-CcCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCC
Q 001329 509 -----SDLNKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDE 578 (1099)
Q Consensus 509 -----~~~r~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~l~~-~~~~~p~~~~~~~g~~ 578 (1099)
.+.|+++.+|||||+. +..||+++|..+...+... .....+++.++++.++|.. +++++|+ +
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~--------e 429 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPH--------E 429 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCch--------h
Confidence 2356799999999974 4579999999887654322 2234456899999999985 8999996 8
Q ss_pred cChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHHHh-cCEEEEEeCCCce
Q 001329 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVAF-HDVVLSLDGEGEW 653 (1099)
Q Consensus 579 LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~~ 653 (1099)
||||||||+||||||+.+|++||+|||||+||+.++.++.++++ +.|.|+|+||||++.+++ ||||++|+
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~----- 504 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMY----- 504 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEE-----
Confidence 99999999999999999999999999999999999999888765 359999999999999975 89988665
Q ss_pred EEeecCCCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCCCCCC
Q 001329 654 RVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADH 721 (1099)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~ 721 (1099)
.|+++|.++.++++.+ |.||||+.|++++|..++
T Consensus 505 ---------------------------------~G~iVE~G~~~~v~~~-p~h~Ytr~L~~avp~~~~ 538 (539)
T COG1123 505 ---------------------------------DGRIVEEGPTEKVFEN-PQHPYTRKLLAAVPKPDP 538 (539)
T ss_pred ---------------------------------CCeEEEeCCHHHHhcC-CCChHHHHHHHhccccCC
Confidence 5677888888888875 899999999999997653
No 64
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-45 Score=380.35 Aligned_cols=228 Identities=22% Similarity=0.260 Sum_probs=195.0
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCc-----cEEEeCCCC--------c
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS-----GHIAKPGVG--------S 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~-----G~I~i~g~~--------~ 509 (1099)
..++++||+++|. ++.+|+|||++|++++++|++||||||||||+|++.++.+..+ |+|.++|++ .
T Consensus 6 ~~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 6 PAIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred ceeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 4689999999994 6789999999999999999999999999999999999988764 999999976 2
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHH-hcCCCCcccCCCCCcChHHHHHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELSLGEQQRLG 588 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~-~~~p~~~~~~~g~~LSGGqrQRla 588 (1099)
++|++||+|||.|.-|+.||+||+.||...++..++.-++.++++|+.+.|++-. +++. ..+..||||||||++
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~-----~sa~~LSGGQQQRLc 159 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLH-----KSALGLSGGQQQRLC 159 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhh-----CCccCCChhHHHHHH
Confidence 5799999999999999999999999998776654445567788899999998543 3331 123479999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCCCceEEeecCCCccccc
Q 001329 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVT 666 (1099)
Q Consensus 589 IARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~~~~~~~~~~~~~~ 666 (1099)
|||||+.+|++|+||||||||||.+..+|.+++.+ ..-|||+|||++.-+...
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRv------------------------- 214 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARV------------------------- 214 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHH-------------------------
Confidence 99999999999999999999999999998888776 378999999999865443
Q ss_pred cccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHh
Q 001329 667 KSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIA 714 (1099)
Q Consensus 667 ~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~ 714 (1099)
+|+.+ .+|.|+++|.++++++|.+ |+|-.|+.-+.
T Consensus 215 -----------SD~ta-Ff~~G~LvE~g~T~~iF~~-P~~~~TedYis 249 (253)
T COG1117 215 -----------SDYTA-FFYLGELVEFGPTDKIFTN-PKHKRTEDYIS 249 (253)
T ss_pred -----------hHhhh-hhcccEEEEEcCHHhhhcC-ccHHHHHHHhc
Confidence 23344 7889999999999999986 89998887654
No 65
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=412.17 Aligned_cols=273 Identities=19% Similarity=0.253 Sum_probs=212.5
Q ss_pred cEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc----CCccEEEeCCCC------cc
Q 001329 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----LVSGHIAKPGVG------SD 510 (1099)
Q Consensus 444 ~I~~~~v~~~y~~---~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~----p~~G~I~i~g~~------~~ 510 (1099)
.|+++||++.|+. ..++++||||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.+ .+
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999953 2479999999999999999999999999999999999986 589999999964 11
Q ss_pred ---c-cccEEEEecCCCC---CcccHHHHhccCCCCC---Cc--CC-cCCHHHHHHHHHhcCChh---HHhcCCCCcccC
Q 001329 511 ---L-NKEIFYVPQRPYT---AVGTLRDQLIYPLTSD---QE--VE-PLTHGGMVELLKNVDLEY---LLDRYPPEKEIN 574 (1099)
Q Consensus 511 ---~-r~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~---~~--~~-~~~~~~i~~~l~~~~l~~---~~~~~p~~~~~~ 574 (1099)
+ ++.|+||||+|.. +..|+.+|+.++.... .. .. ....+++.++++.+||.+ ..+++|+
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~----- 157 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPY----- 157 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCch-----
Confidence 1 3479999999963 3469999997532110 00 00 112457889999999974 4577774
Q ss_pred CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001329 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1099)
Q Consensus 575 ~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1099)
+|||||||||+|||||+.+|++|||||||++||+.++.++.+++++ .|.|+|+||||++.+. .+|+|++|++
T Consensus 158 ---~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 158 ---ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred ---hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999887764 4899999999999985 6999998875
Q ss_pred CCceEEeecCCCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCCCCCC----CCCC
Q 001329 650 EGEWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADH----NVPL 725 (1099)
Q Consensus 650 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~----~~~~ 725 (1099)
+ +++|.++.++++. .|.||||++|+++.|..+. ....
T Consensus 235 G--------------------------------------~ive~g~~~~i~~-~p~~~y~~~ll~~~~~~~~~~~~~~~~ 275 (330)
T PRK15093 235 G--------------------------------------QTVETAPSKELVT-TPHHPYTQALIRAIPDFGSAMPHKSRL 275 (330)
T ss_pred C--------------------------------------EEEEECCHHHHHh-CCCCHHHHHHHHhCCcccccccccccc
Confidence 3 2333444556665 4899999999999986432 1223
Q ss_pred CCCCCCCCCCCCch---------hhhhcccccCCCceeecCCCeeEehh
Q 001329 726 PVFPQLKSAPRILP---------LRVADMFKVLVPTVFDKQGAQLLAVA 765 (1099)
Q Consensus 726 ~~~~~~~~~~~~~p---------~Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1099)
..++|.+|.....+ +.+.+.|... |++... .+|.++|-
T Consensus 276 ~~~~~~~~~~~~~~~~c~f~~rc~~~~~~c~~~-p~~~~~-~~~~~~c~ 322 (330)
T PRK15093 276 NTLPGAIPLLEHLPIGCRLGPRCPYAQRECIET-PRLTGA-KNHLYACH 322 (330)
T ss_pred ccCCCCCCCcccCCCCCCCCCCCcchhhhhhcC-CCCEec-CCeEEEee
Confidence 34667666655543 2478899865 888776 48888884
No 66
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-45 Score=384.82 Aligned_cols=198 Identities=27% Similarity=0.366 Sum_probs=175.7
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
+|+|+||++.|. ++.+++|+||+|++||++.++|||||||||++|+|.|+++|++|+|.++|.+ .++|++|||
T Consensus 1 MI~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred CceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 479999999995 6789999999999999999999999999999999999999999999999976 368999999
Q ss_pred EecCCCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh--hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 518 VPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 518 v~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~--~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
|-|..-+| +.||.|||..-....+..++..++++.|+++.+||+ +|.+|+|+ +|||||||||.+||||+
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~--------eLSGGQQQRVGv~RALA 151 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH--------ELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch--------hcCcchhhHHHHHHHHh
Confidence 99998876 579999999754333333334567889999999996 59999996 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
.+|+++++|||++||||.++.++++.+. +.|+|+|+||||++.+ +-+|||.+|+++
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G 212 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAG 212 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCC
Confidence 9999999999999999999999887654 4599999999999876 579999999854
No 67
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.9e-44 Score=364.97 Aligned_cols=199 Identities=26% Similarity=0.353 Sum_probs=180.8
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC---------cccccc
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNKE 514 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~~r~~ 514 (1099)
+|+|+||++.|++++++|+||||+|++||++-|+||||||||||+|+|.+...|+.|+|.++|.+ .-+|++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 48999999999999889999999999999999999999999999999999999999999999976 236899
Q ss_pred EEEEecCCCC-CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 515 IFYVPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 515 i~~v~Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
||+||||.-+ ...|+.||+++|....+..+....+++.++|+.+||.+..+.+|. +||||||||++||||+
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~--------~LSGGEQQRvaIARAi 152 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS--------QLSGGEQQRVAIARAI 152 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc--------ccCchHHHHHHHHHHH
Confidence 9999999875 467999999999887665555667889999999999999999995 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhc-CEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFH-DVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~-D~Il~l~~~ 650 (1099)
+.+|++||.||||.+|||++..++++++.+ .|+||++.|||.+++... .+++.++++
T Consensus 153 V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~G 213 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDG 213 (223)
T ss_pred ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCC
Confidence 999999999999999999999999988765 599999999999999865 667777653
No 68
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.7e-44 Score=381.25 Aligned_cols=199 Identities=31% Similarity=0.428 Sum_probs=172.3
Q ss_pred EEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC---------ccc-
Q 001329 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDL- 511 (1099)
Q Consensus 445 I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~~- 511 (1099)
++++||++.|..+ .++|+++||+|++||+++|+||||||||||+++|.|+..|++|+|.++|.+ ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 6789999988654 379999999999999999999999999999999999999999999999964 123
Q ss_pred cccEEEEecCCCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHh-cCCCCcccCCCCCcChHHHHHHHH
Q 001329 512 NKEIFYVPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD-RYPPEKEINWGDELSLGEQQRLGM 589 (1099)
Q Consensus 512 r~~i~~v~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~-~~p~~~~~~~g~~LSGGqrQRlaI 589 (1099)
+++||||||+..+. ..|+.|||..|............+.+.++++.+|+.+... ++|. +|||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~--------eLSGGqqQRVAI 153 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPS--------ELSGGQQQRVAI 153 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCch--------hcCHHHHHHHHH
Confidence 46899999998765 5799999997754332222134567788999999997776 7784 899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCCC
Q 001329 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGEG 651 (1099)
Q Consensus 590 ARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~g 651 (1099)
||||+++|+++++||||++||.++.+.+++++++ .|+|+|+||||+..+..|||++.+.++.
T Consensus 154 ARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 154 ARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219 (226)
T ss_pred HHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCe
Confidence 9999999999999999999999999999988764 4899999999999999999999998754
No 69
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6.3e-44 Score=416.89 Aligned_cols=233 Identities=31% Similarity=0.390 Sum_probs=198.6
Q ss_pred CcEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCC----ccEEEeCCCC-------
Q 001329 443 NYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV----SGHIAKPGVG------- 508 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~----~G~I~i~g~~------- 508 (1099)
..++++|+++.|... .++++||||+|.+||++||||+|||||||+.++|+|+.++. +|+|.++|.+
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 379999999988643 26999999999999999999999999999999999999987 8999999975
Q ss_pred --ccc-cccEEEEecCCCC---CcccHHHHhccCCCCCCcC-CcCCHHHHHHHHHhcCChhHHh--cCCCCcccCCCCCc
Q 001329 509 --SDL-NKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLD--RYPPEKEINWGDEL 579 (1099)
Q Consensus 509 --~~~-r~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~l~~~~~--~~p~~~~~~~g~~L 579 (1099)
..+ .++|+||||+|+- +..||.++|......+... ..+..+++.++++.+|+++-.. +||+ +|
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPh--------eL 155 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPH--------QL 155 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCc--------cc
Confidence 122 3689999999962 3469999998755444321 2345678899999999986554 4996 89
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCceE
Q 001329 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWR 654 (1099)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~ 654 (1099)
|||||||+.||+||+++|++||+||||++||+.++.+|++++++ .|+++|+||||++.+. .||+|+||.
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~------ 229 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMY------ 229 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEE------
Confidence 99999999999999999999999999999999999999988764 5999999999999986 589999664
Q ss_pred EeecCCCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCCCCCCC
Q 001329 655 VHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN 722 (1099)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~ 722 (1099)
.|+++|.|++++++++ |+||||++|+++.|.....
T Consensus 230 --------------------------------~G~iVE~G~~~~i~~~-p~hpYT~~Ll~a~p~~~~~ 264 (539)
T COG1123 230 --------------------------------KGEIVETGPTEEILSN-PQHPYTRGLLAAVPRLGDE 264 (539)
T ss_pred --------------------------------CCEEEEecCHHHHHhc-cCCcccHHHHhhCCCcccc
Confidence 5677888999999985 8999999999999986443
No 70
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.5e-43 Score=379.75 Aligned_cols=198 Identities=28% Similarity=0.379 Sum_probs=174.9
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
.++++||++.|+ ++++++|+||++++||+++|+||||||||||+|+|+|+.+|.+|+|.++|.+ +++.++++|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 479999999996 6799999999999999999999999999999999999999999999999976 456789999
Q ss_pred EecCCCCC-cccHHHHhccCCCCCCc----CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001329 518 VPQRPYTA-VGTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1099)
Q Consensus 518 v~Q~p~l~-~~Ti~eni~~~~~~~~~----~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1099)
|||++..+ ..||.|-+.+|...+.. ..+.+.+.+.++++.+|+.++.++.- .+||||||||+.||||
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~--------~~LSGGerQrv~iArA 152 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV--------DELSGGERQRVLIARA 152 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc--------cccChhHHHHHHHHHH
Confidence 99998655 56999999988654321 12234446888999999999999965 3899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 593 L~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|+++|++|+||||||+||...+.++++++++ .|+|+|++.||++.+ ++||++++|+++
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G 215 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDG 215 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999888754 489999999999976 589999999975
No 71
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.2e-43 Score=370.23 Aligned_cols=200 Identities=28% Similarity=0.353 Sum_probs=173.8
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC---------cccc
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLN 512 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~~r 512 (1099)
...|++++|++.| +++.+++||||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|.+ .++|
T Consensus 6 ~~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 3579999999999 56789999999999999999999999999999999999999999999999976 2468
Q ss_pred ccEEEEecCCCCCc-ccHHHHhccCCCCCCcCC-cCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHH
Q 001329 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGM 589 (1099)
Q Consensus 513 ~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~l~~~-~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1099)
+++|++||.--+|. .||+||+.||...+...+ ..-++-+..-++.|||..- .+.+|. +|||||++|+||
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps--------ELSGGM~KRvaL 156 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPS--------ELSGGMRKRVAL 156 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch--------hhcchHHHHHHH
Confidence 89999999999986 599999999987653322 2233445556899999876 889994 899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 590 ARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||++.+|+++++|||||||||.+...+-++++ +.|.|+|+||||++.+. .||+++++.++
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~g 222 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADG 222 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCC
Confidence 999999999999999999999998887666554 35999999999999775 67999999764
No 72
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=5.8e-43 Score=386.14 Aligned_cols=229 Identities=28% Similarity=0.375 Sum_probs=200.1
Q ss_pred CCcEEEEeeEEEcCCC----------CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC---
Q 001329 442 ANYIEFSGVKVVTPTG----------NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--- 508 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~----------~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--- 508 (1099)
...++.+||.+.|+-. ..++++|||++++||++||||+||||||||-++|+++.+++ |+|.++|.+
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 3468999999988631 25899999999999999999999999999999999999877 999999975
Q ss_pred ------ccccccEEEEecCCCC---CcccHHHHhccCCCCCCc--CCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCC
Q 001329 509 ------SDLNKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWG 576 (1099)
Q Consensus 509 ------~~~r~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~~~--~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g 576 (1099)
..+|+++.+||||||- +..||.+.|..|...++. ...+.++++.++|+.+||+ .-.++||+
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPh------- 425 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPH------- 425 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCc-------
Confidence 2468899999999983 457999999998876642 2334567899999999997 56789997
Q ss_pred CCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001329 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1099)
++|||||||+|||||++.+|++++||||||+||...+.++.+++++ .|.+.++||||+..++ .||+++||.+
T Consensus 426 -EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~-- 502 (534)
T COG4172 426 -EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD-- 502 (534)
T ss_pred -ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC--
Confidence 8999999999999999999999999999999999999999887764 5999999999999997 5899998874
Q ss_pred ceEEeecCCCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCCC
Q 001329 652 EWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPI 718 (1099)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~ 718 (1099)
|++||.|+.+++|.| |+||||++|+++.+.
T Consensus 503 ------------------------------------GkiVE~G~~~~if~~-P~~~YT~~L~~aa~~ 532 (534)
T COG4172 503 ------------------------------------GKIVEQGPTEAVFAN-PQHEYTRALLAAAFD 532 (534)
T ss_pred ------------------------------------CEEeeeCCHHHHhcC-CCcHHHHHHHHhhcc
Confidence 457788888899985 899999999998764
No 73
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-42 Score=373.03 Aligned_cols=199 Identities=28% Similarity=0.399 Sum_probs=173.1
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-ccc--cccEEEEe
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDL--NKEIFYVP 519 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~~--r~~i~~v~ 519 (1099)
..|+++|++++|.++ ++|+||||+|++|++++|+||||||||||+|+|+|+.+|++|+|.+.|.+ ... +.+|||||
T Consensus 3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 469999999999755 79999999999999999999999999999999999999999999999875 222 36899999
Q ss_pred cCC---CCCcccHHHHhccCCCCCCc----CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001329 520 QRP---YTAVGTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1099)
Q Consensus 520 Q~p---~l~~~Ti~eni~~~~~~~~~----~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1099)
|.. +-|+.||+|-+..+...... ..+.+.+++.++|+++|+.++.++.. .+|||||+|||.||||
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i--------~~LSGGQ~QRV~lARA 153 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQI--------GELSGGQKQRVLLARA 153 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcc--------cccCcHHHHHHHHHHH
Confidence 965 45678999999887543221 12234688999999999999999865 3899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 593 L~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|+.+|++|+|||||+|+|+.++..+++++++ .|+||++||||++.+. ++|+|+.+.++
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~ 215 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH 215 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCe
Confidence 9999999999999999999999999887754 4999999999999875 68999999864
No 74
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=7.9e-43 Score=398.52 Aligned_cols=226 Identities=25% Similarity=0.320 Sum_probs=189.3
Q ss_pred cEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------c---cc
Q 001329 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------S---DL 511 (1099)
Q Consensus 444 ~I~~~~v~~~y~~---~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~---~~ 511 (1099)
+|+++||++.|++ ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 3789999999963 2479999999999999999999999999999999999999999999999964 1 23
Q ss_pred cccEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001329 512 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1099)
Q Consensus 512 r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1099)
|++|+|+||++.++. .|+.||+.++............+++.++++.+|+.++.+++|. +|||||||||+||
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~--------~LSgGqkQRV~IA 152 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPS--------NLSGGQKQRVAIA 152 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh--------hCCHHHHHHHHHH
Confidence 678999999998875 7999999987542221112234568899999999999999884 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCceEEeecCCCcccc
Q 001329 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKRDGSSVV 665 (1099)
Q Consensus 591 RAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~~~~~~~~~~ 665 (1099)
|||+.+|++||||||||+||+.++..+++.+++ .|.|+|+|||+++.+. .||+|++|+++.
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~-------------- 218 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGE-------------- 218 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE--------------
Confidence 999999999999999999999999999887765 3899999999999985 699999998642
Q ss_pred ccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcC
Q 001329 666 TKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAAS 716 (1099)
Q Consensus 666 ~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~ 716 (1099)
+++.++..+++. .|.|++++.++...
T Consensus 219 ------------------------iv~~g~~~~v~~-~p~~~~~~~~~~~~ 244 (343)
T TIGR02314 219 ------------------------LIEQGTVSEIFS-HPKTPLAQKFIRST 244 (343)
T ss_pred ------------------------EEEEcCHHHHHc-CCCcHHHHHHHhhc
Confidence 122334445555 47899999998753
No 75
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-42 Score=388.65 Aligned_cols=197 Identities=26% Similarity=0.380 Sum_probs=175.0
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEe
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~ 519 (1099)
.|+++||++.|.+.. +++|+||+|++||+++|+||||||||||||+|+||.+|++|+|.++|.+ .-..+.|+|||
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 589999999996433 9999999999999999999999999999999999999999999999975 22357899999
Q ss_pred cCCCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|+.-++ .+||+|||.||+...+..+...++++.++++.+++++++++.|. +||||||||||||||++++|+
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~--------~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL--------QLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc--------cCChhhHHHHHHHHHHhcCCC
Confidence 999876 57999999999887655555678899999999999999999995 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHH-HhcCEEEEEeC
Q 001329 599 FAILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALV-AFHDVVLSLDG 649 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1099)
+++||||+|+||...+..+...+ ++.|.|+|.||||...+ ..+|+|.+|++
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~ 209 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMND 209 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeC
Confidence 99999999999998877765443 44699999999998766 46899999984
No 76
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=391.50 Aligned_cols=199 Identities=26% Similarity=0.380 Sum_probs=175.6
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYV 518 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v 518 (1099)
..++++||++.|. +..+++|+||+|++||+++|+||||||||||||+|+||..|++|+|.++|.+ ..-++.||+|
T Consensus 4 ~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 4 PALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred ceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 4699999999996 7789999999999999999999999999999999999999999999999976 2336789999
Q ss_pred ecCCCCCc-ccHHHHhccCCCCCCcCC-cCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001329 519 PQRPYTAV-GTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1099)
Q Consensus 519 ~Q~p~l~~-~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1099)
||+.-+|+ .||.|||.||+....... ...++++.++++.++++++.+++|+ +||||||||||+||||+.+
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~--------qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH--------QLSGGQQQRVALARALVPE 154 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh--------hhChHHHHHHHHHHHhhcC
Confidence 99998875 799999999987332222 2345689999999999999999995 9999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 597 PKFAILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 597 P~iliLDEpTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|++|+||||.||||...+.+++..+ ++.|+|.|+||||.+.+ ..+|||.+|+++
T Consensus 155 P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G 213 (352)
T COG3842 155 PKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDG 213 (352)
T ss_pred cchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCC
Confidence 9999999999999998887766544 45699999999998865 578999999875
No 77
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-42 Score=360.57 Aligned_cols=199 Identities=23% Similarity=0.352 Sum_probs=175.9
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC---------cccccc
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNKE 514 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~~r~~ 514 (1099)
.|+++||++.||+++++|+||||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|.+ .++|++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999965 356889
Q ss_pred EEEEecCCCCCc-ccHHHHhccCCCCCCc--------CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001329 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQE--------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1099)
Q Consensus 515 i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~--------~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1099)
|||+||++.+.+ .|+.+|+..+...+.. ..+++..++.++|+++|+.+..-... ++|||||||
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--------~~LSGGQQQ 154 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--------STLSGGQQQ 154 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh--------ccCCcchhH
Confidence 999999998764 6999999887554321 12345567888999999988765433 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 586 RlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||+|||||+++|++++.|||+++|||.+.+++++.+++ .|.|+|+.-|++++++ +||||+-|+++
T Consensus 155 RVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G 224 (258)
T COG3638 155 RVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAG 224 (258)
T ss_pred HHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCC
Confidence 99999999999999999999999999999999998864 5999999999999885 79999999864
No 78
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-42 Score=421.08 Aligned_cols=271 Identities=24% Similarity=0.286 Sum_probs=215.4
Q ss_pred CcEEEEeeEEEcCC----------CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----
Q 001329 443 NYIEFSGVKVVTPT----------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---- 508 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~----------~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---- 508 (1099)
..++++||++.|+. +.++++||||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 47999999999962 2469999999999999999999999999999999999999999999999963
Q ss_pred -----ccccccEEEEecCCC--CC-cccHHHHhccCCCCCCcC-CcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCC
Q 001329 509 -----SDLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDE 578 (1099)
Q Consensus 509 -----~~~r~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~ 578 (1099)
..++++|+||||+|+ ++ ..|+.||+.++....... .....+++.++++.+|+. +..+++|. +
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~--------~ 463 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPH--------E 463 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcc--------c
Confidence 124568999999984 43 469999998753211110 112335688899999995 67788884 8
Q ss_pred cChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCce
Q 001329 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEW 653 (1099)
Q Consensus 579 LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~ 653 (1099)
|||||||||+|||||+.+|++|||||||++||+.++.++.+++++ .|.|+|+||||++.+. .||+|++|+++.
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~-- 541 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ-- 541 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE--
Confidence 999999999999999999999999999999999999999888743 4899999999999886 599999997531
Q ss_pred EEeecCCCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCCCCCCC---CCCCCCCC
Q 001329 654 RVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN---VPLPVFPQ 730 (1099)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~---~~~~~~~~ 730 (1099)
+++.++.++++. .|.||||++|+++.|..++. .....++|
T Consensus 542 ------------------------------------iv~~g~~~~i~~-~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 584 (623)
T PRK10261 542 ------------------------------------IVEIGPRRAVFE-NPQHPYTRKLMAAVPVADPSRQRPQRVLLSD 584 (623)
T ss_pred ------------------------------------EEEecCHHHHhc-CCCCHHHHHHHhhCCCCCcccccccccccCC
Confidence 222344445555 48999999999999975542 12335688
Q ss_pred CCCCCCCchhhhhcccccCCCceeecCCCeeEehh
Q 001329 731 LKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVA 765 (1099)
Q Consensus 731 ~~~~~~~~p~Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1099)
.+|++..+.. -+...|++.+.+.+|.++|-
T Consensus 585 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 614 (623)
T PRK10261 585 DLPSNIHLRG-----EEVAAVSLQCVGPGHYVAQP 614 (623)
T ss_pred CCCCCcCCCC-----CCCCCCcceecCCCcEEeec
Confidence 8887754433 15577889888889988553
No 79
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-42 Score=368.79 Aligned_cols=199 Identities=30% Similarity=0.425 Sum_probs=181.0
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i~ 516 (1099)
.++++|++++|+++.++++|+||+|++||.++|+|+||||||||+++++|+++|++|+|.++|.+ .++|+++|
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 58999999999877789999999999999999999999999999999999999999999999964 35689999
Q ss_pred EEecCC--CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 517 YVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 517 ~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
||+|+| .++..||.|.++|+....+...++.++++.++++.+|+.++.++.|+ +||||||||||||.+|+
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~--------~LSGGqkqRvaIA~vLa 154 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPF--------NLSGGQKQRVAIAGVLA 154 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcc--------ccCCcceeeHHhhHHHH
Confidence 999999 57889999999999876655444456788999999999999999886 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHHHh-cCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVAF-HDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1099)
.+|++||||||||+||+...+++++.+++ . |+|+|++|||++.+.. ||++++|+++
T Consensus 155 ~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G 215 (235)
T COG1122 155 MGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDG 215 (235)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999888765 2 7899999999998865 9999999975
No 80
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-41 Score=387.75 Aligned_cols=199 Identities=25% Similarity=0.386 Sum_probs=173.0
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEe
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~ 519 (1099)
.|+++||++.|+++.++|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...++.|+|||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 48999999999555789999999999999999999999999999999999999999999999964 12346899999
Q ss_pred cCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|++.+|. .|++|||.|+............+++.++++.++++++.+++|. +|||||||||+|||||+.+|+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR--------ELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh--------hCCHHHHHHHHHHHHHhcCCC
Confidence 9999885 6999999998643221111234568899999999999999985 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
++|||||||+||+.+++.+.+.+++ .|.|+|+|||+++.+ ..+|+|++|+++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G 211 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGG 211 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999998876653 489999999999876 579999999864
No 81
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.3e-41 Score=373.52 Aligned_cols=232 Identities=26% Similarity=0.390 Sum_probs=197.3
Q ss_pred CCcEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC-----
Q 001329 442 ANYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG----- 508 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~---~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~----- 508 (1099)
.+.++++|+++.|.. ...++++|||+|++||++||||+||||||-..+.|+|+++. -+|+|.++|.+
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 357899999998852 35799999999999999999999999999999999999975 47999999986
Q ss_pred -c---ccc-ccEEEEecCCCCC---cccHHHHhccCCCCCCc-CCcCCHHHHHHHHHhcCCh---hHHhcCCCCcccCCC
Q 001329 509 -S---DLN-KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE---YLLDRYPPEKEINWG 576 (1099)
Q Consensus 509 -~---~~r-~~i~~v~Q~p~l~---~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~l~---~~~~~~p~~~~~~~g 576 (1099)
. .+| .+|+++||+|+.. .-||..+|..+...|.. ......+++.++|+.+|+. ..++.|||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPH------- 156 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPH------- 156 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCc-------
Confidence 1 233 5899999999753 35999999877655433 2335678899999999996 45788896
Q ss_pred CCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001329 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1099)
+|||||||||.||.||+.+|++||.||||.|||...+.+|++++++ .|+++++||||++.++ ++|+|+||..
T Consensus 157 -eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~-- 233 (534)
T COG4172 157 -ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQH-- 233 (534)
T ss_pred -ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEec--
Confidence 8999999999999999999999999999999999999999988764 5999999999999986 6899997764
Q ss_pred ceEEeecCCCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCCCCC
Q 001329 652 EWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIAD 720 (1099)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~ 720 (1099)
|+++|.+.+++.|.+ |+||||+.|+++.|.-+
T Consensus 234 ------------------------------------G~ivE~~~t~~lF~~-PqHpYTr~Ll~aeP~g~ 265 (534)
T COG4172 234 ------------------------------------GEIVETGTTETLFAA-PQHPYTRKLLAAEPSGD 265 (534)
T ss_pred ------------------------------------cEEeecCcHHHHhhC-CCChHHHHHHhcCCCCC
Confidence 456677788888885 89999999999998643
No 82
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=6.8e-41 Score=360.17 Aligned_cols=198 Identities=26% Similarity=0.374 Sum_probs=170.6
Q ss_pred EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c--------ccccc
Q 001329 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNKE 514 (1099)
Q Consensus 445 I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~~r~~ 514 (1099)
++++|+++.|+++ +++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . .+++.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 7899999999654 479999999999999999999999999999999999999999999999964 1 14568
Q ss_pred EEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 515 i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
++|+||++.++. .|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++|||||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~laral 153 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPM--------QLSGGEQQRVAIARAI 153 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh--------hCCHHHHHHHHHHHHH
Confidence 999999998775 6999999875322111111234578889999999988888774 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+.+|+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRG 214 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999888765 3899999999999886 68999999864
No 83
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-41 Score=364.89 Aligned_cols=198 Identities=28% Similarity=0.423 Sum_probs=173.2
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCC---C-cc---ccccEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV---G-SD---LNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~---~-~~---~r~~i~ 516 (1099)
+|+++|+++.|+ +.++++|||++|+.||.+|+.||||||||||+|+|+||..|++|+|.++|. | .. -.++||
T Consensus 2 ~i~i~~~~~~~~-~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFG-AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhcc-cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 477888888774 567899999999999999999999999999999999999999999999997 5 11 236899
Q ss_pred EEecCCCCC-cccHHHHhccCCCCCCcC--CcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 517 YVPQRPYTA-VGTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 517 ~v~Q~p~l~-~~Ti~eni~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
||||+.-+| ..||.|||+||....... +...+.++.+.|+.++|+++.+++|. +||||||||||+||||
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~--------QLSGGQrQRVALARAL 152 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA--------QLSGGQRQRVALARAL 152 (345)
T ss_pred EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch--------hcChHHHHHHHHHHHh
Confidence 999999876 589999999998654221 23456789999999999999999995 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+.+|++|+||||++|||....+++.+.|+ +.|.|+++||||.+.+ +.+|+|++|+++
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G 214 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQG 214 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCC
Confidence 99999999999999999998888776554 4599999999999876 579999999875
No 84
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-40 Score=382.52 Aligned_cols=199 Identities=26% Similarity=0.386 Sum_probs=174.0
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYV 518 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v 518 (1099)
..|+++||++.|. +.++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...+++|+||
T Consensus 5 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 5 NFVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred cEEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4799999999995 4679999999999999999999999999999999999999999999999964 1235789999
Q ss_pred ecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001329 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1099)
Q Consensus 519 ~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1099)
||++.+|. .|+.||+.|+............+++.++++.+++.++.+++|. +|||||||||+|||||+.+|
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~--------~LSgGq~QRVaLARaL~~~P 155 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVD--------QISGGQQQRVALARALILKP 155 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHHcCC
Confidence 99998885 6999999998643221122335678899999999999999884 89999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 598 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 598 ~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+++|||||||+||+.+++++.+.+++ .|+|+|+||||++.+ ..+|+|++|+++
T Consensus 156 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G 213 (351)
T PRK11432 156 KVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKG 213 (351)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999998877653 489999999999987 569999999864
No 85
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.1e-40 Score=356.75 Aligned_cols=198 Identities=30% Similarity=0.440 Sum_probs=169.5
Q ss_pred EEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-cc---------c
Q 001329 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SD---------L 511 (1099)
Q Consensus 445 I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~---------~ 511 (1099)
|+++||++.|+++ +++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4789999999653 579999999999999999999999999999999999999999999999964 11 2
Q ss_pred cccEEEEecCCCCCcc-cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001329 512 NKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1099)
Q Consensus 512 r~~i~~v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1099)
++.++|+||++.++.. |++||+.++...........++++.++++.+|+++..++.|. +||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~la 152 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS--------ELSGGQQQRVAIA 152 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChh--------hcCHHHHHHHHHH
Confidence 4679999999988765 999999875432211111224567889999999988887763 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 591 RAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|||+.+|+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+..||++++|+++
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G 216 (218)
T cd03255 153 RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216 (218)
T ss_pred HHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCC
Confidence 999999999999999999999999999887764 389999999999988889999999864
No 86
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-40 Score=358.63 Aligned_cols=198 Identities=27% Similarity=0.385 Sum_probs=168.6
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEe
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~ 519 (1099)
.++++||++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 3789999999964 679999999999999999999999999999999999999999999999964 12246799999
Q ss_pred cCCCCCc-ccHHHHhccCCCCCCc----CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 520 QRPYTAV-GTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~----~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
|+|.++. .|+.||+.++...... ......+++.++++.+++.++.++.+. +||||||||++|||||+
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrl~la~al~ 152 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA--------QLSGGQRQRVALARALA 152 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh--------hCCHHHHHHHHHHHHHh
Confidence 9998875 6999999876432111 011123467788999999888887763 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G 213 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKG 213 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999887764 3899999999999764 69999999864
No 87
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3e-40 Score=379.49 Aligned_cols=198 Identities=25% Similarity=0.381 Sum_probs=173.4
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEe
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~ 519 (1099)
.|+++||++.|+ +..+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...++.++|||
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 4 YLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 589999999996 4679999999999999999999999999999999999999999999999964 12356899999
Q ss_pred cCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|++.+|+ .|++||+.|+............+++.++++.++|+++.++.|. +|||||||||+|||||+.+|+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~--------~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPG--------QLSGGQQQRVALARALATSPG 154 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChh--------hCCHHHHHHHHHHHHHhcCCC
Confidence 9998885 7999999997543221112235678899999999999999884 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
++|||||||+||+.++.++.+.+++ .|.|+|+||||++.+ ..+|+|++|+++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G 211 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHG 211 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999998877654 489999999999976 569999999975
No 88
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.1e-40 Score=350.08 Aligned_cols=193 Identities=30% Similarity=0.404 Sum_probs=168.1
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC---ccccccEEEEecCC
Q 001329 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIFYVPQRP 522 (1099)
Q Consensus 446 ~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---~~~r~~i~~v~Q~p 522 (1099)
+++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+||+|
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 367899999643679999999999999999999999999999999999999999999999965 23456899999998
Q ss_pred --CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001329 523 --YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1099)
Q Consensus 523 --~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1099)
.++..|++||+.++..... ...+++.++++.+++.++.++.|. +||||||||++|||||+.+|+++
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 81 DYQLFTDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPL--------SLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCch--------hCCHHHHHHHHHHHHHHhCCCEE
Confidence 3567899999987643211 234578899999999988888774 89999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 601 ILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 601 iLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 202 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANG 202 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999888764 4899999999999886 69999999864
No 89
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-40 Score=377.84 Aligned_cols=199 Identities=27% Similarity=0.380 Sum_probs=171.0
Q ss_pred cEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c--------cc
Q 001329 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DL 511 (1099)
Q Consensus 444 ~I~~~~v~~~y~~---~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~~ 511 (1099)
+|+++||++.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . ..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 3789999999962 3579999999999999999999999999999999999999999999999964 1 13
Q ss_pred cccEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001329 512 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1099)
Q Consensus 512 r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1099)
+++|+||||++.++. .|++||+.++............+++.++++.+|+.++.++.|. +||||||||++||
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LSgGq~qRv~lA 152 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPA--------QLSGGQKQRVAIA 152 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh--------hCCHHHHHHHHHH
Confidence 578999999998875 6999999876432111111234567889999999988888774 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 591 RAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||+++|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G 217 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAG 217 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999888764 3899999999999876 59999999864
No 90
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-40 Score=353.17 Aligned_cols=200 Identities=27% Similarity=0.350 Sum_probs=170.6
Q ss_pred EEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-ccccccEEEEec
Q 001329 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQ 520 (1099)
Q Consensus 445 I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~~r~~i~~v~Q 520 (1099)
|+++|+++.|+++ +++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 4689999999642 579999999999999999999999999999999999999999999999965 344678999999
Q ss_pred CCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
+|.++. .|++||+.++............+++.++++.+++.++.++.|. +||||||||++|||||+.+|++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPH--------QLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcc--------cCCHHHHHHHHHHHHHHcCCCE
Confidence 998876 6999999875322111111234567889999999988888774 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeC-CCc
Q 001329 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG-EGE 652 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~-~g~ 652 (1099)
+||||||++||+.++..+.+.+++ .|.|+|+|||+++.+ ..||++++|++ +|.
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 999999999999999999887754 389999999999976 56999999985 443
No 91
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-40 Score=373.46 Aligned_cols=206 Identities=23% Similarity=0.226 Sum_probs=169.8
Q ss_pred CCCcEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-----CCccEEEeCCCC------
Q 001329 441 EANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG------ 508 (1099)
Q Consensus 441 ~~~~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~------ 508 (1099)
..+.|+++|+++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4568999999999964 4579999999999999999999999999999999999996 579999999975
Q ss_pred --ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCc-CCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001329 509 --SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP-LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1099)
Q Consensus 509 --~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~-~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1099)
..+|+.++||||+|+++++|++||+.++......... ..++.+.++++.+++.+.++... ...+.+|||||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~----~~~~~~LSgGqkq 232 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDL----DKAGNALSGGQQQ 232 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhh----hCCcccCCHHHHH
Confidence 1357889999999999999999999975322111000 11223567888888754332111 1245689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHh-cCEEEEEeCC
Q 001329 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAF-HDVVLSLDGE 650 (1099)
Q Consensus 586 RlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1099)
|++||||++.+|+|+||||||+|||+.+...+.+.+++ .++|+|+|||+++.+.. ||+|++|+++
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G 300 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQG 300 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999888775 37999999999999876 9999999864
No 92
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6e-40 Score=377.00 Aligned_cols=198 Identities=26% Similarity=0.400 Sum_probs=171.5
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEe
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~ 519 (1099)
.|+++|+++.|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...+++++|||
T Consensus 2 ~L~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFG-RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 378999999996 4679999999999999999999999999999999999999999999999965 12346899999
Q ss_pred cCCCCCc-ccHHHHhccCCCCC----CcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 520 QRPYTAV-GTLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~----~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
|++.++. .|+.||+.++.... .......++++.++++.++++++.+++|. +||||||||++|||||+
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA--------QLSGGQKQRVALARALA 152 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChh--------hCCHHHHHHHHHHHHHh
Confidence 9998876 69999999875421 11111234678899999999999999884 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.++..+.+.+++ .|+|+|+||||++.+. .+|+|++|+++
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G 213 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQG 213 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999998877654 3899999999999864 69999999864
No 93
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.4e-40 Score=379.43 Aligned_cols=200 Identities=26% Similarity=0.403 Sum_probs=173.4
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEE
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFY 517 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~ 517 (1099)
.+.|+++|+++.|+ +.++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++.++|
T Consensus 12 ~~~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 12 SPLVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CceEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 35699999999995 4679999999999999999999999999999999999999999999999965 123568999
Q ss_pred EecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001329 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1099)
Q Consensus 518 v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1099)
|||++.+|. .|+.|||.|+............+++.++++.++++++.+++|. +|||||||||+|||||+.+
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~--------~LSgGq~QRVaLARaL~~~ 162 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH--------QLSGGQQQRVAIARAVVNK 162 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh--------hCCHHHHHHHHHHHHHhcC
Confidence 999998875 5999999997643221111224568889999999999999984 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 597 PKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 597 P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|+++|||||||+||+..+..+.+.+++ .|+|+|+||||+..+ ..+|+|++|+++
T Consensus 163 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G 221 (375)
T PRK09452 163 PKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDG 221 (375)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999998877654 489999999999976 579999999864
No 94
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.5e-39 Score=361.92 Aligned_cols=199 Identities=22% Similarity=0.337 Sum_probs=177.7
Q ss_pred cEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEE
Q 001329 444 YIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~ 516 (1099)
.|+++||++.|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.+ .++|+.|+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 5899999999974 4679999999999999999999999999999999999998 78999999965 24678999
Q ss_pred EEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHH
Q 001329 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL 593 (1099)
||||+|.+|.+|+++|+..... .+++++.++++.+|+.++.+++|.+..+ +.|..||||||||++||||+
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~-------~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGK-------WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred EECCCcccchhhHHHHhhhccC-------CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999963211 3567889999999999999999865433 35788999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+.+|+++||||||++||+.+.+.+++.+++ .++|+|+||||++.+..||+|++|+++
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G 212 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEEN 212 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCC
Confidence 999999999999999999999999998875 489999999999999899999999864
No 95
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=6.5e-40 Score=351.90 Aligned_cols=198 Identities=30% Similarity=0.432 Sum_probs=170.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c--------cccccE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNKEI 515 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~~r~~i 515 (1099)
++++|+++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 7899999999645689999999999999999999999999999999999999999999999964 1 245689
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
+|+||+|.++. .|+.||+.++...........++++.++++.+++.+..++.|. +||||||||++|||||+
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrl~la~al~ 153 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPE--------QLSGGEQQRVAIARAIV 153 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh--------hCCHHHHHHHHHHHHHh
Confidence 99999998875 6999999875321111111234577889999999988887773 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 99999999999999999999999888765 4899999999999886 58999999763
No 96
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-40 Score=351.97 Aligned_cols=197 Identities=30% Similarity=0.434 Sum_probs=168.3
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEec
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~Q 520 (1099)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeC-CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 46899999995 4679999999999999999999999999999999999999999999999964 123568999999
Q ss_pred CCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
++.++. .|++||+.++............+++.++++.+++.++.++.|. +||||||||++|||||+.+|++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH--------ELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChh--------hCCHHHHHHHHHHHHHhcCCCE
Confidence 998775 6999999875322111111234567889999999988888774 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G 207 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEG 207 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECC
Confidence 999999999999999999888764 389999999999976 469999999864
No 97
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-40 Score=364.85 Aligned_cols=199 Identities=24% Similarity=0.328 Sum_probs=172.5
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
.|+++||++.|+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 68999999999755679999999999999999999999999999999999999999999999964 134568999
Q ss_pred EecCC--CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 518 VPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 518 v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
+||+| .++..|+.||+.++............+++.++++.+++.++.++.|. +||||||||++|||||+.
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY--------HLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh--------hCCHHHHHHHHHHHHHHc
Confidence 99998 56778999999976432111111224567889999999998888884 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+|+++||||||++||+.+..++.+.+++ .|.|+|++||+++.+ +.||+|++|+++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999888764 389999999999987 579999999864
No 98
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-40 Score=357.00 Aligned_cols=197 Identities=27% Similarity=0.362 Sum_probs=168.2
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC---------ccccccE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNKEI 515 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~~r~~i 515 (1099)
|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..+++.+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 47899999995 4679999999999999999999999999999999999999999999999954 1246789
Q ss_pred EEEecCCCCCcc-cHHHHhccCCCCCC-cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 516 FYVPQRPYTAVG-TLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 516 ~~v~Q~p~l~~~-Ti~eni~~~~~~~~-~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
+||||++.++.. |+.||+.++..... .......+++.++++.+++.++.++.|. +||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~ia~al 151 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPA--------ELSGGMKKRVALARAL 151 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHH
Confidence 999999988764 99999987532111 1111123567789999999888877763 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+.+|+++||||||++||+.++..+.+.+++ .|+|+|+|||+++.+. .||++++|+++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G 213 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDG 213 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999888765 3899999999999875 59999999864
No 99
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=8.2e-40 Score=350.98 Aligned_cols=198 Identities=26% Similarity=0.341 Sum_probs=169.6
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c--------cccccE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNKEI 515 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~~r~~i 515 (1099)
++++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 4689999999655679999999999999999999999999999999999999999999999864 1 245689
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
+|+||++.++. .|++||+.++...........++++.++++.+++++..++.|. +||||||||++|||||+
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~laral~ 152 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPA--------ELSGGEQQRVAIARAIV 152 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChh--------hcCHHHHHHHHHHHHHH
Confidence 99999998876 5999999876322111111234567889999999988887774 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G 212 (214)
T cd03292 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERG 212 (214)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999887764 4899999999999886 58999999864
No 100
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.4e-40 Score=325.26 Aligned_cols=200 Identities=31% Similarity=0.420 Sum_probs=176.0
Q ss_pred CcEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC---------cc
Q 001329 443 NYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SD 510 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~ 510 (1099)
..|+++++++.-+.+ -.+|++|+|.|++||.++||||||||||||+-+++|+.+|++|+|.+.|++ ..
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 368888888866443 479999999999999999999999999999999999999999999999975 12
Q ss_pred cc-ccEEEEecCCCC-CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001329 511 LN-KEIFYVPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1099)
Q Consensus 511 ~r-~~i~~v~Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1099)
+| +++|||||...+ ++.|-.||+..|....++......+...+.|+++||.+-+..||. +||||||||||
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~--------qLSGGEQQRVA 156 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPA--------QLSGGEQQRVA 156 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCcc--------ccCchHHHHHH
Confidence 33 689999999864 678999999999876654444455668899999999999999995 99999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 589 IARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|||||...|++|+.||||.+||..+-+++.+++ ++.|.|.++||||+.+...|||++.|..+
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G 222 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSG 222 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecc
Confidence 999999999999999999999999999887765 45799999999999999999999999764
No 101
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.3e-40 Score=349.95 Aligned_cols=197 Identities=29% Similarity=0.418 Sum_probs=166.4
Q ss_pred EEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEE
Q 001329 446 EFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1099)
Q Consensus 446 ~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v 518 (1099)
+++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999642 579999999999999999999999999999999999999999999999964 1345789999
Q ss_pred ecCCC--CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001329 519 PQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1099)
Q Consensus 519 ~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1099)
||++. ++..|++||+.++...........++++.++++.+++.++.++.|. +||||||||++|||||+.+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPF--------TLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcc--------cCCHHHHHHHHHHHHHhcC
Confidence 99983 5678999999875321111111123467789999999988887763 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEEeCC
Q 001329 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDGE 650 (1099)
Q Consensus 597 P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1099)
|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+.. ||+|++|+++
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999887754 38899999999998875 9999999863
No 102
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-39 Score=375.92 Aligned_cols=200 Identities=23% Similarity=0.385 Sum_probs=172.9
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEE
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFY 517 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~ 517 (1099)
...|+++|+++.|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...++.+||
T Consensus 17 ~~~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 34699999999995 4579999999999999999999999999999999999999999999999964 123578999
Q ss_pred EecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001329 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1099)
Q Consensus 518 v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1099)
|||++.+|. .|+.||+.|+............+++.++++.+++.++.++.|. +|||||||||+|||||+.+
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~--------~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH--------QLSGGQRQRVALARSLAKR 167 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHhcC
Confidence 999998886 5999999997543221112234678899999999999999885 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 597 PKFAILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 597 P~iliLDEpTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|++||||||||+||+..+..+.+.+ ++.|.|+|+||||++.+ ..+|+|++|+++
T Consensus 168 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G 226 (377)
T PRK11607 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRG 226 (377)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999998876544 44589999999999976 579999999864
No 103
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=9.6e-40 Score=376.01 Aligned_cols=199 Identities=22% Similarity=0.316 Sum_probs=172.7
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCc--cEEEeCCCC----ccccccEE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS--GHIAKPGVG----SDLNKEIF 516 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~--G~I~i~g~~----~~~r~~i~ 516 (1099)
+.|+++||++.|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++ |+|.++|.+ ...++.|+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 4 GGIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred eEEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 5699999999996 4579999999999999999999999999999999999999999 999999965 12356899
Q ss_pred EEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
||||++.+|. .|++||+.|+...........++++.++++.++|+++.++.|. +|||||||||+|||||+.
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~--------~LSgGq~QRvaLARAL~~ 154 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA--------QLSGGMQQRIAIARAIAI 154 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh--------hCCHHHHHHHHHHHHHhc
Confidence 9999998875 5999999987543221112234568889999999999999885 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----c-CcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRA----M-GTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~----~-g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+|+++|||||||+||+....++.+.+++ . |.|+|+||||++.+ ..+|+|++|+++
T Consensus 155 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 155 EPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999998876653 3 79999999999986 569999999864
No 104
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-39 Score=327.54 Aligned_cols=195 Identities=25% Similarity=0.340 Sum_probs=170.7
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEec
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~Q 520 (1099)
+.+++|.+.|.. .=-.++++|++||++||+||||||||||+++|+|+..|.+|+|.++|++ .-..+-++++||
T Consensus 2 l~L~~V~~~y~~---~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 2 LALDDVRFSYGH---LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred ccccceEEeeCc---ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 567889998853 2346789999999999999999999999999999999999999999987 234577999999
Q ss_pred CCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
+..+|. -||.+||.+|....-....+..+++..++.++|+..+.+|+|. +||||||||+|+||+|+++-+|
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~--------~LSGGqRQRvALARclvR~~Pi 150 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG--------ELSGGQRQRVALARCLVREQPI 150 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc--------ccCchHHHHHHHHHHHhccCCe
Confidence 999985 6999999998764333334567889999999999999999995 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 600 AILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++||||+|+|||..+.++..++ ++.+.|++||||.++.++ .+|++++++++
T Consensus 151 lLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~G 206 (231)
T COG3840 151 LLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNG 206 (231)
T ss_pred EEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCC
Confidence 9999999999999999877655 457999999999999775 68999999874
No 105
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.6e-39 Score=348.73 Aligned_cols=195 Identities=33% Similarity=0.463 Sum_probs=166.8
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-ccccccEEEEecCCCC
Q 001329 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPYT 524 (1099)
Q Consensus 446 ~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~~r~~i~~v~Q~p~l 524 (1099)
+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..++++++|+||++.+
T Consensus 1 ~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 1 EVEDLTVSYG-GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred CcccceeEEC-CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 3678999985 3579999999999999999999999999999999999999999999999975 2456789999999876
Q ss_pred ---CcccHHHHhccCCCCCC----cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001329 525 ---AVGTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1099)
Q Consensus 525 ---~~~Ti~eni~~~~~~~~----~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1099)
+..|+.||+.++..... .......+++.++++.+++.++.++.+. +||||||||++|||||+.+|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~la~al~~~p 151 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG--------ELSGGQQQRVLLARALVQDP 151 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc--------cCCHHHHHHHHHHHHHHcCC
Confidence 45799999987643211 0111234567889999999988887763 89999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001329 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1099)
Q Consensus 598 ~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1099)
+++||||||++||+.+...+.+.+++ .|.|+|+|||+++.+. .+|++++|++
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 207 (213)
T cd03235 152 DLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR 207 (213)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcC
Confidence 99999999999999999999887764 4799999999999875 6899999975
No 106
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.7e-39 Score=350.42 Aligned_cols=198 Identities=26% Similarity=0.365 Sum_probs=168.5
Q ss_pred EEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c-----c---cc
Q 001329 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D---LN 512 (1099)
Q Consensus 445 I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~---~r 512 (1099)
|+++||++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . + ++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6899999999642 479999999999999999999999999999999999999999999999864 1 1 23
Q ss_pred -ccEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001329 513 -KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1099)
Q Consensus 513 -~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1099)
+.++|+||++.++. .|++||+.++............+++.++++.+|+++..++.|. +||||||||++||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~la 153 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPS--------ELSGGERQRVAIA 153 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh--------hCCHHHHHHHHHH
Confidence 57999999998775 6999999874321111111123567789999999888887763 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 591 RAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|||+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+..+|++++|+++
T Consensus 154 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G 217 (221)
T TIGR02211 154 RALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDG 217 (221)
T ss_pred HHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCC
Confidence 999999999999999999999999999887753 389999999999998889999999864
No 107
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-39 Score=353.28 Aligned_cols=194 Identities=29% Similarity=0.366 Sum_probs=169.2
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 489999999995 4679999999999999999999999999999999999999999999999964 234678999
Q ss_pred EecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001329 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1099)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1099)
+||++.++..|++||+.++..... ...+++.++++.+++. ++.++.+ .+||||||||++||||++.+
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDV--------KNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCc--------ccCCHHHHHHHHHHHHHhcC
Confidence 999999888899999987543211 2245678899999996 5667766 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 597 PKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 597 P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .||+|++|+++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 999999999999999999998887754 3899999999999875 69999999864
No 108
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-39 Score=351.85 Aligned_cols=200 Identities=25% Similarity=0.351 Sum_probs=170.1
Q ss_pred CcEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c--------c
Q 001329 443 NYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------D 510 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~ 510 (1099)
+.++++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 368999999999743 479999999999999999999999999999999999999999999999964 1 1
Q ss_pred c-cccEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001329 511 L-NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1099)
Q Consensus 511 ~-r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1099)
. ++.++|+||++.++. .|++||+.++............+++.++++.+|+.+..++.|. +||||||||++
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LSgG~~qrl~ 155 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPS--------ELSGGERQRVA 155 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChh--------hCCHHHHHHHH
Confidence 2 257999999998776 4999999875321111111234567889999999888777663 89999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 589 IARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||||++.+|+++||||||++||+.++..+.+.+++ .|+|+|+|||+++.+..+|++++|+++
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G 221 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDG 221 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECC
Confidence 99999999999999999999999999999887754 389999999999999888999999864
No 109
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-39 Score=362.21 Aligned_cols=199 Identities=28% Similarity=0.360 Sum_probs=172.0
Q ss_pred cEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccE
Q 001329 444 YIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~--~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i 515 (1099)
.++++||++.|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 58999999999642 469999999999999999999999999999999999999999999999964 1346789
Q ss_pred EEEecCCC--CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 516 ~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
+|+||+|. ++..|++|||.++...........++++.++++.+|++++.++.|. +||||||||++|||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LSgGq~qrv~lAral 155 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPA--------RLSGGQKQRVAIAGAV 155 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcc--------cCCHHHHHHHHHHHHH
Confidence 99999983 5567999999986432211111234568889999999998888874 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+.+|++|||||||++||+.++..+.+.+++ .|+|+|++||+++.+..||+|++|+++
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G 216 (279)
T PRK13650 156 AMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNG 216 (279)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 999999999999999999999999887653 389999999999988889999999864
No 110
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-39 Score=363.24 Aligned_cols=198 Identities=25% Similarity=0.359 Sum_probs=168.8
Q ss_pred EEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c-------ccc
Q 001329 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-------DLN 512 (1099)
Q Consensus 445 I~~~~v~~~y~~~----~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-------~~r 512 (1099)
|+++||++.|+++ +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 7899999999742 479999999999999999999999999999999999999999999999964 1 345
Q ss_pred ccEEEEecCC--CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh--hHHhcCCCCcccCCCCCcChHHHHHHH
Q 001329 513 KEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLG 588 (1099)
Q Consensus 513 ~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~--~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1099)
+++|||||+| .++..|++||+.++............+++.++++.+|++ ++.++.| .+||||||||++
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~--------~~LSgGq~qrv~ 154 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP--------FELSGGQKRRVA 154 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCc--------ccCCHHHHHHHH
Confidence 7899999998 466789999998754322111112335678899999997 5666666 489999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 589 IARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|||||+.+|++|||||||++||+.++.++.+.+++ .|.|+|+|||+++.+ ..||+|++|+++
T Consensus 155 iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G 221 (287)
T PRK13637 155 IAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221 (287)
T ss_pred HHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999887754 389999999999987 579999999864
No 111
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.6e-39 Score=358.93 Aligned_cols=199 Identities=29% Similarity=0.366 Sum_probs=166.2
Q ss_pred cEEEEeeEEEcCC--------CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c-----
Q 001329 444 YIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S----- 509 (1099)
Q Consensus 444 ~I~~~~v~~~y~~--------~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~----- 509 (1099)
.|+++||++.|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 4889999999963 3679999999999999999999999999999999999999999999999964 1
Q ss_pred ---cccccEEEEecCCC--CC-cccHHHHhccCCCCC-CcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcCh
Q 001329 510 ---DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSL 581 (1099)
Q Consensus 510 ---~~r~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSG 581 (1099)
.+++.++|+||+|. ++ ..|+.||+.++.... .......++++.++++.+++. +..++.+ .+|||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~LSg 153 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLP--------RQLSG 153 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCCh--------hhCCH
Confidence 13567999999983 33 479999997643211 111112345678899999996 5666655 48999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||||++|||||+.+|++|||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G 227 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCC
Confidence 999999999999999999999999999999999998887754 3899999999999886 69999999853
No 112
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2e-39 Score=349.06 Aligned_cols=198 Identities=24% Similarity=0.302 Sum_probs=169.3
Q ss_pred EEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEE
Q 001329 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIF 516 (1099)
Q Consensus 445 I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~ 516 (1099)
|+++||++.|++. .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 7899999999643 179999999999999999999999999999999999999999999999964 23467899
Q ss_pred EEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
|+||+|.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++||||++.
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV--------GGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh--------hhcCHHHHHHHHHHHHHhc
Confidence 9999998877 599999986432111111123456788999999998888766 3899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|+++||||||++||+.+.+.+.+.+++ .|.|+|+|||+++.+. .+|++++|+++
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G 212 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRG 212 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999888764 4899999999999765 68999999864
No 113
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.3e-39 Score=348.62 Aligned_cols=198 Identities=25% Similarity=0.341 Sum_probs=168.9
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c--------cccccE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNKEI 515 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~~r~~i 515 (1099)
|+++|+++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+++.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 7899999999545689999999999999999999999999999999999999999999999964 1 145789
Q ss_pred EEEecCCCC-CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 516 FYVPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 516 ~~v~Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
+|+||+|.+ +..|++||+.++............+++.++++.+++.+..++.|. +||||||||++||||++
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~laral~ 153 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPI--------QLSGGEQQRVGIARAVV 153 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCch--------hCCHHHHHHHHHHHHHH
Confidence 999999986 467999999876322111111123457789999999988887764 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .+|+|++|+++
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDG 213 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999998887764 3799999999999886 58999999864
No 114
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-39 Score=366.65 Aligned_cols=201 Identities=21% Similarity=0.270 Sum_probs=170.6
Q ss_pred CCcEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--c------
Q 001329 442 ANYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--S------ 509 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~----~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~------ 509 (1099)
...|+++||++.|+++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 3579999999999642 469999999999999999999999999999999999999999999999843 1
Q ss_pred --------------cccccEEEEecCC--CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcc
Q 001329 510 --------------DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKE 572 (1099)
Q Consensus 510 --------------~~r~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~ 572 (1099)
.++++++||||+| +++..|++||+.++............+++.++++.+++. ++.++.|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---- 174 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP---- 174 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc----
Confidence 2467899999998 678889999998864321111112234677889999996 5777766
Q ss_pred cCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEe
Q 001329 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLD 648 (1099)
Q Consensus 573 ~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~ 648 (1099)
.+||||||||++|||||+.+|++|||||||++||+.++..+.+.+++ .|+|+|+||||++.+ +.||+|++|+
T Consensus 175 ----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 175 ----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 48999999999999999999999999999999999999999887753 489999999999976 5799999998
Q ss_pred CC
Q 001329 649 GE 650 (1099)
Q Consensus 649 ~~ 650 (1099)
++
T Consensus 251 ~G 252 (320)
T PRK13631 251 KG 252 (320)
T ss_pred CC
Confidence 75
No 115
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.4e-39 Score=346.13 Aligned_cols=197 Identities=24% Similarity=0.373 Sum_probs=167.9
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEec
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~Q 520 (1099)
|+++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+||
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 478999999964 579999999999999999999999999999999999999999999999964 122457999999
Q ss_pred CCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
++.++. .|++||+.++...........++++.++++.+++.++.++.|. +||||||||++|||||+.+|++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPK--------QLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChh--------hCCHHHHHHHHHHHHHhcCCCE
Confidence 998775 6999999875322111111234567788999999988888774 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g 207 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDG 207 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 999999999999999999887754 3899999999999875 58999999764
No 116
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4.2e-39 Score=352.27 Aligned_cols=198 Identities=24% Similarity=0.354 Sum_probs=168.9
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c--------cccccE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNKEI 515 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~~r~~i 515 (1099)
|+++||++.|+.++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 7899999999635679999999999999999999999999999999999999999999999964 1 146789
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCCC--------cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQ--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~--------~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1099)
+|+||++.++. .|++||+.++..... ......++++.++++.+++.+..++.+ .+||||||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qr 153 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA--------DQLSGGQQQR 153 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHHH
Confidence 99999998775 699999987532110 001123456788999999988877766 3899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 587 laIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
++|||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+ +.||++++|+++
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G 222 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAG 222 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 9999999999999999999999999999998887754 389999999999987 469999999864
No 117
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.6e-39 Score=348.77 Aligned_cols=198 Identities=21% Similarity=0.246 Sum_probs=169.1
Q ss_pred EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEE
Q 001329 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1099)
Q Consensus 445 I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v 518 (1099)
|+++||++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..++++++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 4789999999653 679999999999999999999999999999999999999999999999965 2346789999
Q ss_pred ecCCCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001329 519 PQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1099)
Q Consensus 519 ~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1099)
||++.++ ..|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA--------RTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh--------hhCCHHHHHHHHHHHHHhcCC
Confidence 9999887 5799999987532211111112356788999999988877766 389999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 598 KFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 598 ~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 208 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDG 208 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999988875 3689999999999885 68999999864
No 118
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=374.49 Aligned_cols=198 Identities=21% Similarity=0.335 Sum_probs=170.8
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEe
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~ 519 (1099)
.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++.|+|||
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 489999999995 4679999999999999999999999999999999999999999999999964 12346799999
Q ss_pred cCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|++.++. .|++||+.++............+++.++++.+++.++.++.|. +|||||||||+|||||+.+|+
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~--------~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPK--------ALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChh--------hCCHHHHHHHHHHHHHhcCCC
Confidence 9998875 6999999987532211111234568889999999998888884 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .||+|++|+++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G 210 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999998877653 3899999999999764 69999999864
No 119
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.5e-39 Score=373.58 Aligned_cols=187 Identities=28% Similarity=0.318 Sum_probs=162.7
Q ss_pred CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccc----cccEEEEecCCCCC
Q 001329 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDL----NKEIFYVPQRPYTA 525 (1099)
Q Consensus 456 ~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~----r~~i~~v~Q~p~l~ 525 (1099)
+++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .++ ++.++||||++.+|
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 35679999999999999999999999999999999999999999999999965 123 67899999999988
Q ss_pred c-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeC
Q 001329 526 V-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1099)
Q Consensus 526 ~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDE 604 (1099)
+ .|++||+.++....+.......+++.++++.+||+++.+++|. +|||||||||+|||||+.+|+++||||
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~--------~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD--------ELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh--------hCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 6 6999999986433221112235678899999999999999885 899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 605 CTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 605 pTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|||+||+.++..+++.+.+ .|+|+|+|||+++.+ +.||+|++|+++
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G 206 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAG 206 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999887643 489999999999975 579999999764
No 120
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-39 Score=355.01 Aligned_cols=199 Identities=23% Similarity=0.256 Sum_probs=166.5
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC--------c
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------S 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~ 509 (1099)
..++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ .
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 4799999999996 46799999999999999999999999999999999999997 48999999854 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCc-CCcCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
..++.++|+||++.++..|++||+.++...... .....++++.++++.+++.+ ..++.+ .+||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LSgG~~ 156 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA--------LSLSGGQQ 156 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc--------ccCCHHHH
Confidence 246789999999988889999999876422111 01122456778889988843 334433 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G 225 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNG 225 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999888765 3789999999999874 68999999864
No 121
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=6.9e-39 Score=331.22 Aligned_cols=166 Identities=54% Similarity=0.997 Sum_probs=153.6
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCC
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l 524 (1099)
|+++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|++|++.+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----~~i~~~~q~~~~ 75 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----EDLLFLPQRPYL 75 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----ceEEEECCCCcc
Confidence 478999999975568999999999999999999999999999999999999999999999883 579999999998
Q ss_pred CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeC
Q 001329 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1099)
Q Consensus 525 ~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDE 604 (1099)
+..|+.||+.++ .+ .+||||||||++||||++.+|+++||||
T Consensus 76 ~~~tv~~nl~~~------------------------------~~--------~~LS~G~~~rv~laral~~~p~~lllDE 117 (166)
T cd03223 76 PLGTLREQLIYP------------------------------WD--------DVLSGGEQQRLAFARLLLHKPKFVFLDE 117 (166)
T ss_pred ccccHHHHhhcc------------------------------CC--------CCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 888999999753 12 3799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEeCCCce
Q 001329 605 CTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEW 653 (1099)
Q Consensus 605 pTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~ 653 (1099)
||++||+.+++.+.+.+++.+.|+|++||+++....+|++++++++|+|
T Consensus 118 Pt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~i~~l~~~~~~ 166 (166)
T cd03223 118 ATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDRVLDLDGEGGW 166 (166)
T ss_pred CccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCEEEEEcCCCCC
Confidence 9999999999999999988889999999999988899999999998865
No 122
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-39 Score=360.00 Aligned_cols=196 Identities=26% Similarity=0.318 Sum_probs=166.1
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c-----cc----cccE
Q 001329 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----DL----NKEI 515 (1099)
Q Consensus 446 ~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~~----r~~i 515 (1099)
.++|+++.|. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+ ++++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 5678888884 5679999999999999999999999999999999999999999999999964 1 11 3579
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
+|+||++.++. .|+.||+.++............+++.++++.+++.++.++.|. +||||||||++|||||+
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD--------ELSGGMQQRVGLARALA 176 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcc--------cCCHHHHHHHHHHHHHh
Confidence 99999998874 6999999875321111111234567889999999988888874 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+ ..+|++++|+++
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G 237 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDG 237 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999999887754 389999999999986 469999999864
No 123
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-39 Score=352.94 Aligned_cols=196 Identities=24% Similarity=0.319 Sum_probs=168.1
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-ccccccEEEEecCCC
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPY 523 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~~r~~i~~v~Q~p~ 523 (1099)
++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+..++|+||++.
T Consensus 2 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 2 LQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred EEEEEEEEEeC-CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 78999999995 4679999999999999999999999999999999999999999999999965 223456999999998
Q ss_pred CCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEE
Q 001329 524 TAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602 (1099)
Q Consensus 524 l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliL 602 (1099)
++. .|+.||+.++............+++.++++.+++.+..++.|. +||||||||++|||||+.+|+++||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LSgGq~qrl~laral~~~p~lllL 152 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIW--------QLSGGQRQRVGIARALAANPQLLLL 152 (255)
T ss_pred cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChh--------hCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 776 6999999875321111111224567889999999888777663 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001329 603 DECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1099)
Q Consensus 603 DEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1099)
||||++||+.+...+.+.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 153 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 204 (255)
T PRK11248 153 DEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSP 204 (255)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999887754 3899999999999875 6899999986
No 124
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-39 Score=350.92 Aligned_cols=198 Identities=23% Similarity=0.356 Sum_probs=168.6
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c--------cccccE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNKEI 515 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~~r~~i 515 (1099)
++++||++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 4689999999643679999999999999999999999999999999999999999999999964 1 235679
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCC--------CcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSD--------QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~--------~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1099)
+|+||++.++. .|++||+.++.... ........+++.++++.+++.+..++.+ .+||||||||
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qr 152 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA--------DQLSGGQQQR 152 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc--------ccCCHHHHHH
Confidence 99999998765 69999998753211 0011123456788999999988777766 3899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 587 laIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++|||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 153 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G 221 (241)
T cd03256 153 VAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDG 221 (241)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999887754 3899999999999887 79999999864
No 125
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6.8e-39 Score=347.47 Aligned_cols=200 Identities=28% Similarity=0.358 Sum_probs=170.5
Q ss_pred CcEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-cc--------
Q 001329 443 NYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SD-------- 510 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~-------- 510 (1099)
..|+++||++.|+++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 469999999999653 359999999999999999999999999999999999999999999999964 11
Q ss_pred c-cccEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001329 511 L-NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1099)
Q Consensus 511 ~-r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1099)
. ++.++|+||++.++. .|+.||+.++............+++.++++.+++.++.++.|. +||||||||++
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~Ge~qrl~ 156 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPA--------QLSGGEQQRVA 156 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChh--------hCCHHHHHHHH
Confidence 1 257999999998876 5999999864321111111234578889999999988888774 89999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 589 IARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|||||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+..+|++++|+++
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g 222 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNG 222 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999887753 389999999999988889999999864
No 126
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.4e-39 Score=353.31 Aligned_cols=198 Identities=24% Similarity=0.261 Sum_probs=168.0
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCC-----ccEEEeCCCC-c-------c
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVG-S-------D 510 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-----~G~I~i~g~~-~-------~ 510 (1099)
.++++||++.|+ +.++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+ . .
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYG-EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEEC-CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 378999999996 357999999999999999999999999999999999999998 9999999964 1 2
Q ss_pred ccccEEEEecCCCCCcccHHHHhccCCCCCCc-CCcCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHHHH
Q 001329 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQQ 585 (1099)
Q Consensus 511 ~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~l~----~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1099)
.++.++|+||++.++..|+.||+.++...... ......+++.++++.+|+. +..++.+ .+|||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG~~q 151 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSA--------LGLSGGQQQ 151 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc--------ccCCHHHHH
Confidence 35689999999988889999999875322111 1112345678899999997 5556655 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 586 RlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|+|||+++.+. .+|++++|+++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 219 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDG 219 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999988765 2589999999999774 69999999864
No 127
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-39 Score=347.32 Aligned_cols=197 Identities=23% Similarity=0.237 Sum_probs=168.3
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEEe
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v~ 519 (1099)
|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..++++++|+|
T Consensus 1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 47899999995 4679999999999999999999999999999999999999999999999854 13456899999
Q ss_pred cCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|++.++. .|++||+.++...........++++.++++.++++++.++.|. +||||||||++||||++.+|+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK--------TYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChh--------hCCHHHHHHHHHHHHHhcCCC
Confidence 9998775 5999999875321111111234567889999999988888774 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G 208 (220)
T cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHG 208 (220)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999998887754 3899999999999875 68999999864
No 128
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-39 Score=361.08 Aligned_cols=199 Identities=23% Similarity=0.288 Sum_probs=169.8
Q ss_pred cEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----------c
Q 001329 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----------S 509 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~----~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----------~ 509 (1099)
+|+++||++.|+.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 37899999999743 259999999999999999999999999999999999999999999999964 1
Q ss_pred cccccEEEEecCC--CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHH
Q 001329 510 DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1099)
++++.++||||+| .++..|+.||+.++....+......++++.++++.+++. ++.++.|. +||||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~--------~LSgGqkqr 152 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF--------ELSGGQMRR 152 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcc--------cCCHHHHHH
Confidence 2467899999998 677789999999864322111112345678899999995 57777664 899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 587 laIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
++|||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..||+|++|+++
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G 220 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKG 220 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999887754 489999999999987 579999999875
No 129
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-39 Score=352.31 Aligned_cols=198 Identities=27% Similarity=0.378 Sum_probs=167.6
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v 518 (1099)
++++||++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 4689999999643579999999999999999999999999999999999999999999999964 1345689999
Q ss_pred ecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChh--HHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY--LLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 519 ~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~--~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
||+|.++. .|++||+.++............+++.++++.+++.+ +.++.+ .+||||||||++|||||+.
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--------~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYP--------HELSGGQQQRVGVARALAA 152 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcCh--------hhCCHHHHHHHHHHHHHhc
Confidence 99998875 699999987532211111123456788999999985 667665 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+ ..+|+|++|+++
T Consensus 153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G 212 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNG 212 (242)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999998887764 389999999999976 568999999864
No 130
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-38 Score=351.42 Aligned_cols=193 Identities=21% Similarity=0.307 Sum_probs=170.5
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-ccccccEEEEecC
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQR 521 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~~r~~i~~v~Q~ 521 (1099)
..|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+||+
T Consensus 11 ~~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 11 TPLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CcEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 4699999999995 4679999999999999999999999999999999999999999999998865 3456789999999
Q ss_pred CCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001329 522 PYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1099)
Q Consensus 522 p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1099)
+.++. .|++||+.++... ..++++.++++.+++.+..++.| .+||||||||++|||||+.+|+++
T Consensus 90 ~~l~~~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLKG------QWRDAALQALAAVGLADRANEWP--------AALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred ccCCCCCcHHHHHHhcccc------hHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98776 6999999876321 13467888999999998887766 389999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 601 ILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 601 iLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
||||||++||+.++..+.+.+++ .|.|+|+|||+++.+ ..||+|++|+++
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G 210 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEG 210 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999998887754 489999999999987 469999999864
No 131
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-39 Score=362.58 Aligned_cols=199 Identities=19% Similarity=0.260 Sum_probs=169.6
Q ss_pred cEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----------
Q 001329 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----------- 508 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~----~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----------- 508 (1099)
.|+++||++.|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 37899999999753 269999999999999999999999999999999999999999999998643
Q ss_pred -------------------ccccccEEEEecCC--CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhc
Q 001329 509 -------------------SDLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDR 566 (1099)
Q Consensus 509 -------------------~~~r~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~ 566 (1099)
..+++.||||||+| .++..|+.|||.++...........++++.++++.+|+. ++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 12456899999987 567789999999864322211122345688999999996 77888
Q ss_pred CCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcC
Q 001329 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHD 642 (1099)
Q Consensus 567 ~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D 642 (1099)
.|. +||||||||++|||||+.+|++|||||||++||+.+...+.+.+++ .|.|+|+|||+++.+ ..||
T Consensus 162 ~~~--------~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ad 233 (305)
T PRK13651 162 SPF--------ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTK 233 (305)
T ss_pred Chh--------hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCC
Confidence 774 8999999999999999999999999999999999999998887754 489999999999876 5799
Q ss_pred EEEEEeCC
Q 001329 643 VVLSLDGE 650 (1099)
Q Consensus 643 ~Il~l~~~ 650 (1099)
+|++|+++
T Consensus 234 rv~vl~~G 241 (305)
T PRK13651 234 RTIFFKDG 241 (305)
T ss_pred EEEEEECC
Confidence 99999764
No 132
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-39 Score=343.75 Aligned_cols=197 Identities=25% Similarity=0.320 Sum_probs=168.5
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--ccccccEEEEecCC
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDLNKEIFYVPQRP 522 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~~~r~~i~~v~Q~p 522 (1099)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||++
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 47899999995 4679999999999999999999999999999999999999999999999975 23467899999999
Q ss_pred CCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001329 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1099)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1099)
.++. .|++||+.++...........++++.++++.+++.+..++.+. +||||||||++||||++.+|+++|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVE--------ELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHh--------hCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8876 5999999875321111111234567889999999887777663 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 602 LDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 602 LDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||||++||+.++..+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 152 lDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 204 (210)
T cd03269 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKG 204 (210)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCC
Confidence 9999999999999999888764 3889999999999875 68999999864
No 133
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-39 Score=344.63 Aligned_cols=196 Identities=25% Similarity=0.320 Sum_probs=167.8
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEEe
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v~ 519 (1099)
|+++|+++.|+ ++++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+|
T Consensus 1 i~~~~~~~~~~-~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYG-KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEEC-CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 47899999995 457999999999999 999999999999999999999999999999999965 13467899999
Q ss_pred cCCCCCcc-cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|++.++.. |+.||+.++............+++.++++.+++.++.++.+. +||||||||++|||||+.+|+
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIG--------SLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchh--------hCCHHHHHHHHHHHHHhcCCC
Confidence 99988764 999999864321111111124567889999999988777663 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++||||||++||+.+++.+.+.+++. +.|+|++||+++.+. .+|++++|+++
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g 205 (211)
T cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKG 205 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999888753 789999999999885 68999999864
No 134
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.6e-38 Score=346.52 Aligned_cols=200 Identities=26% Similarity=0.418 Sum_probs=172.2
Q ss_pred EEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 445 IEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 445 I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
|+++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999964 3679999999999999999999999999999999999999999999999964 234678999
Q ss_pred EecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHc
Q 001329 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~ 594 (1099)
+||++.++..|+.||+.++... ...+++.+.++..++.++++.+|.+... ....+||||||||++||||++
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 154 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPG------MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI 154 (237)
T ss_pred EcCCchhccchHHHHhhccCCC------CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999998889999999875421 2344566777778888888776543222 245789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+..+|++++|+++
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G 212 (237)
T cd03252 155 HNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKG 212 (237)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999988865 389999999999999889999999864
No 135
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-39 Score=354.91 Aligned_cols=200 Identities=23% Similarity=0.262 Sum_probs=166.2
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC--------
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------- 508 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------- 508 (1099)
.+.|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 10 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 10 QPQIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred ceeEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 35799999999995 46799999999999999999999999999999999999985 89999999854
Q ss_pred ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001329 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 509 ~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
..+++.++|+||++.++..|+.||+.++...........++++.++++.+++.+ ..++.+ .+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG~~ 160 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPA--------LSLSGGQQ 160 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh--------hhCCHHHH
Confidence 124567999999998888999999987532111111112345778899998842 333333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+. .||++++|+++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G 229 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMG 229 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999988765 3799999999999874 69999999864
No 136
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-39 Score=355.23 Aligned_cols=236 Identities=18% Similarity=0.197 Sum_probs=185.1
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-----CCccEEEeCCCC--------
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1099)
...|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 11 ~~~l~i~nl~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 11 NIIISLQNVTISYG-TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred CceEEEEeEEEEEC-CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 45799999999995 4679999999999999999999999999999999999987 699999999854
Q ss_pred ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001329 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 509 ~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
..+++.++|+||++.++..|++||+.++...... ....++++.++++.+++.. ..++.+ .+||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~G~~ 160 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGY-TGDMDELVERSLRKAAVWDECKDKLNESG--------YSLSGGQQ 160 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCC-cHHHHHHHHHHHHHhCCcchhhhhhCCCc--------ccCCHHHH
Confidence 1345689999999988878999999876432211 1112455677888888743 333333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCCCceEEeecCCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGEGEWRVHDKRDG 661 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~g~~~~~~~~~~ 661 (1099)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..||++++|+++... .++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~----~~~- 235 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVE----GGS- 235 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccc----ccc-
Confidence 999999999999999999999999999999999988875 378999999999877 469999999862100 000
Q ss_pred ccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhc
Q 001329 662 SSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAA 715 (1099)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~ 715 (1099)
.. ..|++++.++..+++.+ |.|||++.++.+
T Consensus 236 ----------------~g------~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~ 266 (269)
T PRK14259 236 ----------------GG------KVGYLVEFNETKKIFNS-PKQKATQDYISG 266 (269)
T ss_pred ----------------cc------ccceEEEeCCHHHHHhC-cCChHHHHHHhc
Confidence 00 01344555556666654 789999988764
No 137
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=6.6e-39 Score=352.97 Aligned_cols=197 Identities=27% Similarity=0.349 Sum_probs=168.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc---------------
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------------- 509 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------------- 509 (1099)
|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+-
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 47899999996 46799999999999999999999999999999999999999999999998531
Q ss_pred ----cccccEEEEecCCCCCc-ccHHHHhccCCCC-CCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHH
Q 001329 510 ----DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGE 583 (1099)
Q Consensus 510 ----~~r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~-~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGq 583 (1099)
.+++.++|++|++.++. .|+.||+.++... ........++++.++++.+++.++.++.|. +|||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LS~G~ 151 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPA--------QLSGGQ 151 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChh--------hcCHHH
Confidence 23568999999998774 7999999874211 111111234567889999999988888773 899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|||++|||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|+|||+++.+ ..+|++++|+++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 223 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKG 223 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999998887764 389999999999988 469999999864
No 138
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-39 Score=358.54 Aligned_cols=200 Identities=22% Similarity=0.311 Sum_probs=171.7
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc--------ccccc
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKE 514 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~~r~~ 514 (1099)
..|+++||++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 3699999999997556799999999999999999999999999999999999999999999999641 34678
Q ss_pred EEEEecCC--CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001329 515 IFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1099)
Q Consensus 515 i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1099)
++|+||+| .++..|++||+.++............+++.++++.+|+.++.++.+ .+||||||||++||||
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LS~G~~qrl~lara 155 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPT--------HCLSFGQKKRVAIAGV 155 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCc--------ccCCHHHHHHHHHHHH
Confidence 99999998 4677899999987532211111122356788999999998888766 4899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 593 L~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G 218 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEG 218 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999998887754 3899999999999886 79999999864
No 139
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-39 Score=349.34 Aligned_cols=184 Identities=29% Similarity=0.361 Sum_probs=163.0
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------c---cc-cccEEEEecCCCC-Ccc
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------S---DL-NKEIFYVPQRPYT-AVG 527 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~---~~-r~~i~~v~Q~p~l-~~~ 527 (1099)
.-++|+||+|+.||+..|+|-||||||||+|++.||.+|++|+|+++|.+ + ++ |+++++|||+.-+ |..
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 36899999999999999999999999999999999999999999999986 1 23 4689999999865 567
Q ss_pred cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001329 528 TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1099)
Q Consensus 528 Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTS 607 (1099)
||.||..||....+..+.+..+++.+.++.+||++|.+++|+ +|||||||||.+||||+.+|+||++|||+|
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~--------eLSGGMqQRVGLARAla~~~~IlLMDEaFS 193 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN--------ELSGGMQQRVGLARALANDPDILLMDEAFS 193 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc--------cccchHHHHHHHHHHHccCCCEEEecCchh
Confidence 999999999887666555677889999999999999999996 899999999999999999999999999999
Q ss_pred CCCHHHHHHHHH----HHHhcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 608 AVTTDMEERFCA----KVRAMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 608 aLD~~~~~~l~~----~l~~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
||||-.+.++++ +.++.++||++||||++.+ +..|||..|+++
T Consensus 194 ALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG 241 (386)
T COG4175 194 ALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDG 241 (386)
T ss_pred hcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCC
Confidence 999976666554 4456799999999999875 668999988764
No 140
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=9.6e-39 Score=341.53 Aligned_cols=193 Identities=22% Similarity=0.268 Sum_probs=169.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEec
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~Q 520 (1099)
|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 47899999995 4689999999999999999999999999999999999999999999999975 134568999999
Q ss_pred CCCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 521 RPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 521 ~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
++.++ ..|++||+.++..... ..++++.++++.+++.+..++.+. +||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLG----IRKKRIDEVLDVVGLKDSAKKKVK--------GFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHhhhHh--------hCCHHHHHHHHHHHHHhcCCCE
Confidence 99876 5799999987532211 245678889999999988887663 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 600 AILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g 202 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKG 202 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECC
Confidence 999999999999999999887764 4899999999999885 69999999864
No 141
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-38 Score=344.24 Aligned_cols=201 Identities=27% Similarity=0.432 Sum_probs=174.9
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
.|+++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 48999999999754579999999999999999999999999999999999999999999999864 234678999
Q ss_pred EecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHc
Q 001329 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~ 594 (1099)
+||++.++.+|+.||+.++... ...+++.++++.+++.++.+++|.+... ....+||||||||++|||||+
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~ 155 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPN------ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML 155 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCC------CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999998888999999876432 2345677788889999888887643222 235689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+..||++++|+++
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 213 (229)
T cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDG 213 (229)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCC
Confidence 99999999999999999999999888765 379999999999998889999999865
No 142
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.1e-39 Score=349.63 Aligned_cols=197 Identities=27% Similarity=0.392 Sum_probs=168.5
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c-------cccccEE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-------DLNKEIF 516 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-------~~r~~i~ 516 (1099)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+++.++
T Consensus 2 l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 78999999995 4679999999999999999999999999999999999999999999999964 1 2356899
Q ss_pred EEecCCCCCc-ccHHHHhccCCCC-CCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 517 YVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~-~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
|+||++.++. .|+.||+.++... ........++++.++++.+|+++..++.|. +||||||||++||||++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPS--------ELSGGQQQRVAIARALA 152 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChh--------hcCHHHHHHHHHHHHHh
Confidence 9999998775 6999999875311 111111234567889999999888887763 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 212 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKG 212 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999887754 4899999999999885 68999999864
No 143
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=7e-39 Score=362.27 Aligned_cols=199 Identities=24% Similarity=0.291 Sum_probs=171.1
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 517 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~ 517 (1099)
..|+++||++.|+ +..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...+++|||
T Consensus 6 ~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 4799999999995 4679999999999999999999999999999999999999999999999975 235678999
Q ss_pred EecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001329 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1099)
Q Consensus 518 v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1099)
+||++.++. .|++||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+++
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKV--------GELSGGMKRRLTLARALVND 156 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCch--------hhCCHHHHHHHHHHHHHhCC
Confidence 999998875 699999986332211111112346778999999988777765 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 597 P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|+++||||||+|||+.++..+.+.+++ .|+|+|++||+++.+. .||+|++|+++
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G 214 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEG 214 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999888765 4899999999999885 69999999875
No 144
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-39 Score=356.50 Aligned_cols=198 Identities=25% Similarity=0.323 Sum_probs=170.8
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccEEE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIFY 517 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i~~ 517 (1099)
++++||++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 7899999999655679999999999999999999999999999999999999999999999964 123567999
Q ss_pred EecCCC--CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 518 VPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 518 v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
+||+|. ++..|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++|||||+.
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK--------TLSGGQGQCVALAGILTM 153 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcc--------cCCHHHHHHHHHHHHHHc
Confidence 999985 4567999999876422111111224567888999999988888774 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+..||+|++++++
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G 211 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRG 211 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECC
Confidence 9999999999999999999999888754 489999999999999889999999864
No 145
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-39 Score=359.21 Aligned_cols=199 Identities=20% Similarity=0.300 Sum_probs=169.4
Q ss_pred cEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----------c
Q 001329 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----------S 509 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~----~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----------~ 509 (1099)
.++++||++.|+++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999642 469999999999999999999999999999999999999999999999954 1
Q ss_pred cccccEEEEecCC--CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHH
Q 001329 510 DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1099)
.++++||||||+| .++..|+.||+.++............+++.++++.+|+. +..++.| .+||||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qr 153 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--------FQMSGGQMRK 153 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccCCHHHHHH
Confidence 3467899999998 567789999999864321111112345678899999996 6777766 3899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 587 laIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
++|||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|+|||+++.+ ..+|+|++|+++
T Consensus 154 v~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G 222 (286)
T PRK13646 154 IAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEG 222 (286)
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999887764 389999999999987 478999999864
No 146
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-38 Score=356.49 Aligned_cols=200 Identities=27% Similarity=0.367 Sum_probs=173.0
Q ss_pred CcEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccE
Q 001329 443 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i 515 (1099)
..++++||++.|++ .+++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ..+++.|
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 36899999999964 3579999999999999999999999999999999999999999999999964 1345689
Q ss_pred EEEecCC--CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 516 FYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 516 ~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
+|+||+| .++..|+.||+.++............+++.++++.+|+.++.++.|. +||||||||++|||||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LS~G~~qrv~laral 155 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH--------RLSGGQKQRVAIAGVL 155 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc--------cCCHHHHHHHHHHHHH
Confidence 9999998 45678999999886432211111224568889999999999888874 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+..||+|++++++
T Consensus 156 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G 216 (279)
T PRK13635 156 ALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKG 216 (279)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECC
Confidence 999999999999999999999999988764 289999999999998889999999864
No 147
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.8e-38 Score=340.92 Aligned_cols=200 Identities=31% Similarity=0.440 Sum_probs=176.3
Q ss_pred cEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEE
Q 001329 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~ 516 (1099)
.++++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 47899999999753 579999999999999999999999999999999999999999999999964 23567899
Q ss_pred EEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHH
Q 001329 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL 593 (1099)
|+||+|.++.+|++||+.+... ...+++.++++.+++.++++++|.+... .+..+||||||||++|||||
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~-------~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGE-------YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred EECCCCccccchHHHHhCcCCC-------CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 9999999988999999975421 2456788899999999988877654333 35679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..+|++++|+++
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 213 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKG 213 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 999999999999999999999999998875 378999999999999889999999864
No 148
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-39 Score=347.35 Aligned_cols=198 Identities=29% Similarity=0.398 Sum_probs=169.2
Q ss_pred EEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c--------ccc
Q 001329 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLN 512 (1099)
Q Consensus 445 I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~~r 512 (1099)
|+++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 289999999999999999999999999999999999999999999999964 1 125
Q ss_pred ccEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001329 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1099)
Q Consensus 513 ~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1099)
+.++|+||++.++. .|+.||+.++............+++.++++.+++.+..++.+. +||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~la~ 153 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPA--------QLSGGQKQRVGIAR 153 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChh--------hCCHHHHHHHHHHH
Confidence 68999999998886 6999999875321111111234567889999999988887763 89999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 592 AL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G 217 (233)
T cd03258 154 ALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKG 217 (233)
T ss_pred HHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999887754 3899999999999875 58999999864
No 149
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.9e-38 Score=340.58 Aligned_cols=201 Identities=30% Similarity=0.505 Sum_probs=174.3
Q ss_pred cEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEE
Q 001329 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~ 516 (1099)
.++++|+++.|+++ +++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 47899999999643 579999999999999999999999999999999999999999999999964 12356899
Q ss_pred EEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHH
Q 001329 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL 593 (1099)
|+||++.++..|+.||+.++... ...+++.++++.+++.+..++.|.+..+ ....+||||||||++||||+
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPL------ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCC------CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 99999998888999999875321 2345677889999999988887753332 23468999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+.+|+++||||||++||+.+...+.+.+++. +.|+|++||+++.+..+|++++++++
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g 214 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSG 214 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999988763 57999999999988889999999864
No 150
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-39 Score=359.27 Aligned_cols=198 Identities=24% Similarity=0.286 Sum_probs=168.0
Q ss_pred EEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc----------c
Q 001329 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------D 510 (1099)
Q Consensus 445 I~~~~v~~~y~~~----~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~----------~ 510 (1099)
++++||++.|+++ .++|+||||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+- .
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999642 4699999999999999999999999999999999999999999999999641 2
Q ss_pred ccccEEEEecCC--CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHH
Q 001329 511 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1099)
Q Consensus 511 ~r~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1099)
.++.++||||+| .++..|+.||+.++............+++.++++.++|. ++.++.| .+||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qrv 154 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSP--------FELSGGQMRRV 154 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCc--------ccCCHHHHHHH
Confidence 356899999998 577789999998764321111111234678899999996 5667766 38999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 588 aIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|+|||+++.+. .||+|++|+++
T Consensus 155 ~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G 222 (290)
T PRK13634 155 AIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKG 222 (290)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999998887754 3899999999999874 69999999864
No 151
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=9.7e-39 Score=342.45 Aligned_cols=197 Identities=26% Similarity=0.361 Sum_probs=168.5
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--------ccccccEE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--------SDLNKEIF 516 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--------~~~r~~i~ 516 (1099)
++++||++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 478999999964 679999999999999999999999999999999999999999999999864 12357899
Q ss_pred EEecCCCCCc-ccHHHHhccCCCC-CCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 517 YVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~-~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
|+||++.++. .|+.||+.++... .........+++.++++.+++++..++.|. +||||||||++||||++
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~la~al~ 151 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPA--------QLSGGQQQRVAIARALA 151 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCcc--------ccCHHHHHHHHHHHHHh
Confidence 9999998775 6999999875321 111111233567889999999988888774 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g 211 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDG 211 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999888764 4899999999999885 69999999864
No 152
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=8.5e-39 Score=351.47 Aligned_cols=198 Identities=25% Similarity=0.347 Sum_probs=167.6
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--------------c
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--------------S 509 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--------------~ 509 (1099)
.++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 589999999996 4579999999999999999999999999999999999999999999999853 1
Q ss_pred cccccEEEEecCCCCCc-ccHHHHhccCCCC-CCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHH
Q 001329 510 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~-~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1099)
.+++.++|+||++.++. .|+.||+.++... .........+++.++++.+|+.+..++.+ .+||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~Gq~qrv 153 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYP--------RRLSGGQQQRV 153 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCCh--------hhCChHHHHHH
Confidence 23568999999998775 6999999864211 11111112345778899999987777665 48999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 588 aIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G 220 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQG 220 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999887764 4899999999999885 58999999864
No 153
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.2e-38 Score=345.28 Aligned_cols=199 Identities=24% Similarity=0.290 Sum_probs=167.8
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcC-----cCCccEEEeCCCC-c-------cc
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW-----PLVSGHIAKPGVG-S-------DL 511 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~-----~p~~G~I~i~g~~-~-------~~ 511 (1099)
|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.+ . .+
T Consensus 1 i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 47899999995 457999999999999999999999999999999999999 9999999999964 1 23
Q ss_pred cccEEEEecCCCCCcccHHHHhccCCCCCCcCC-cCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001329 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1099)
Q Consensus 512 r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1099)
+++++|+||++.++..|++||+.++........ ...++++.++++.+|+.+..++.+. ..+||||||||++||
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~~LSgG~~qrv~la 153 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH------ALGLSGGQQQRLCLA 153 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC------cccCCHHHHHHHHHH
Confidence 568999999998887899999987643211111 1124567889999999887666530 148999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 591 RAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||+.+|+++||||||++||+.++..+.+.+++. ..|+|++||+++.+. .||++++|+++
T Consensus 154 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 216 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNG 216 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999888653 379999999999875 69999999864
No 154
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.2e-38 Score=347.67 Aligned_cols=198 Identities=25% Similarity=0.357 Sum_probs=168.1
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v 518 (1099)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 1 ALEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred CEEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence 378999999996 4679999999999999999999999999999999999999999999999964 1223579999
Q ss_pred ecCCCC-CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001329 519 PQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1099)
Q Consensus 519 ~Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1099)
||++.+ +..|++||+.++............+++.++++.+|+.+..++.+ .+||||||||++|||||+.+|
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKV--------RELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCCh--------hhCCHHHHHHHHHHHHHhcCC
Confidence 999977 46799999987532211111123456778999999988777665 389999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 598 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 598 ~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+..+|++++|+++
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G 208 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRG 208 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCC
Confidence 99999999999999999999887753 389999999999988889999999864
No 155
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-38 Score=354.42 Aligned_cols=200 Identities=26% Similarity=0.378 Sum_probs=171.7
Q ss_pred CcEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccE
Q 001329 443 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i 515 (1099)
..++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 47999999999963 5689999999999999999999999999999999999999999999999965 1356789
Q ss_pred EEEecCC--CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 516 FYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 516 ~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
+|+||+| .++..|++||+.++............+++.++++.+++.++.++.+. +||||||||++|||||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrl~laral 157 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQ--------NLSGGQKQRVAIASVL 157 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcc--------cCCHHHHHHHHHHHHH
Confidence 9999998 45567999999875322111111123457789999999988888773 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+.+|+++||||||++||+.+.+.+++.+++ . +.|+|++||+++.+..||++++|+++
T Consensus 158 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G 218 (271)
T PRK13632 158 ALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEG 218 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECC
Confidence 999999999999999999999999988865 2 58999999999988889999999864
No 156
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=8e-39 Score=348.57 Aligned_cols=197 Identities=28% Similarity=0.409 Sum_probs=167.1
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c-----c-ccccEEE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D-LNKEIFY 517 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~-~r~~i~~ 517 (1099)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . . .+..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 46899999996 4579999999999999999999999999999999999999999999999964 1 1 2457999
Q ss_pred EecCCCCCcc-cHHHHhccCCCCCCcC----------CcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH
Q 001329 518 VPQRPYTAVG-TLRDQLIYPLTSDQEV----------EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1099)
Q Consensus 518 v~Q~p~l~~~-Ti~eni~~~~~~~~~~----------~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1099)
+||++.++.. |++||+.++....... .....+++.++++.+++.+..++.+ .+||||||||
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qr 151 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA--------GELSYGQQRR 151 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh--------hhCCHHHHHH
Confidence 9999988765 9999998764321110 1112346778999999988777766 3899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 587 laIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++|||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G 219 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQG 219 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999888764 5899999999999885 59999999864
No 157
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-38 Score=351.04 Aligned_cols=200 Identities=21% Similarity=0.211 Sum_probs=167.5
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-----CCccEEEeCCCC--------
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1099)
.+.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 11 ~~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 45799999999996 4579999999999999999999999999999999999986 589999999854
Q ss_pred ccccccEEEEecCCCCCcccHHHHhccCCCCC-CcCCcCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHH
Q 001329 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGE 583 (1099)
Q Consensus 509 ~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~l~----~~~~~~p~~~~~~~g~~LSGGq 583 (1099)
..++++++|+||++.++..|++||+.++.... .......++++.++++.+++. +..++.+ .+|||||
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq 161 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSG--------YSLSGGQ 161 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC--------CCCCHHH
Confidence 13467899999999888899999998753221 111112235678899999984 3344433 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||++|||||+.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 231 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLG 231 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999888865 3789999999999875 69999999864
No 158
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-38 Score=339.14 Aligned_cols=195 Identities=23% Similarity=0.317 Sum_probs=166.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEec
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~Q 520 (1099)
|+++|+++.|++ +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 478999999963 33 39999999999999999999999999999999999999999999964 123467999999
Q ss_pred CCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
++.++. .|++||+.++...........++++.++++.+++.+..++.|. +||||||||++||||++.+|++
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG--------ELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcc--------cCCHHHHHHHHHHHHHhcCCCE
Confidence 998876 4999999876431111111235578899999999988888774 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 205 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNG 205 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECC
Confidence 999999999999999999887764 3899999999999885 58999999864
No 159
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-38 Score=348.79 Aligned_cols=202 Identities=21% Similarity=0.228 Sum_probs=167.0
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc---CCccEEEeCCCC------cccccc
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG------SDLNKE 514 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~---p~~G~I~i~g~~------~~~r~~ 514 (1099)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ ...++.
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 478999999996 4679999999999999999999999999999999999984 699999999965 134678
Q ss_pred EEEEecCCCCCcccHHHHhccCCCCCCcC--CcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001329 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1099)
Q Consensus 515 i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1099)
++|+||+|.++..|++||+.++....... ....++++.++++.+++.+.+..... ..+.+||||||||++||||
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLK----QNALALSGGQQQRLCIARA 156 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhc----CCcccCCHHHHHHHHHHHH
Confidence 99999999988899999998753221111 11233467789999999644322110 1235899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 593 L~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|+.+|+++||||||++||+.++..+.+.+++ .|+|+|+|||+++.+. .+|++++|+++
T Consensus 157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 157 LAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLG 217 (246)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECC
Confidence 9999999999999999999999999888865 4899999999999775 69999999864
No 160
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-38 Score=354.09 Aligned_cols=199 Identities=25% Similarity=0.327 Sum_probs=170.7
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
.++++||++.|+++.++|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 58899999999755679999999999999999999999999999999999999999999999964 134568999
Q ss_pred EecCCC--CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 518 VPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 518 v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
+||+|. ++..|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++|||||+.
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPH--------HLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcc--------cCCHHHHHHHHHHHHHHc
Confidence 999983 5678999999875422111111223467889999999988888774 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+|+++||||||++||+.+...+.+.+++ .|.|+|++||+++.+ +.||++++|+++
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999998887754 389999999999988 579999999864
No 161
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.2e-38 Score=357.62 Aligned_cols=199 Identities=28% Similarity=0.371 Sum_probs=172.0
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v 518 (1099)
.++++||++.|..++.+|+||||+|++||++|++||||||||||+|+|+|+.+|++|+|.++|.+ .+.++++||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 57899999999645789999999999999999999999999999999999999999999999965 2567899999
Q ss_pred ecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001329 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1099)
Q Consensus 519 ~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1099)
||+|.++. .|++||+.|............++++.++++.++|.+..++.. .+||+|||||++||+||+++|
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~lS~G~kqrl~ia~aL~~~P 155 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKV--------RTLSGGMKQRLSIALALLHDP 155 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcch--------hhcCHHHHHHHHHHHHHhcCC
Confidence 99998664 699999988544332211234568999999999998543333 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cC-cEEEEEccChhHHHh-cCEEEEEeCC
Q 001329 598 KFAILDECTSAVTTDMEERFCAKVRA---MG-TSCITISHRPALVAF-HDVVLSLDGE 650 (1099)
Q Consensus 598 ~iliLDEpTSaLD~~~~~~l~~~l~~---~g-~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1099)
+++||||||+|||+.+..++.+.+++ .| +||+++||.++.+.. ||+|++++++
T Consensus 156 ~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 156 ELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999888765 35 899999999998875 9999999875
No 162
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.5e-38 Score=345.59 Aligned_cols=197 Identities=22% Similarity=0.287 Sum_probs=166.7
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------cc-ccccEEE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SD-LNKEIFY 517 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~-~r~~i~~ 517 (1099)
++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .. .++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 47899999995 4679999999999999999999999999999999999999999999999964 11 2457999
Q ss_pred EecCCCCCcc-cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001329 518 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1099)
Q Consensus 518 v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1099)
+||++.++.. |++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKA--------SSLSGGERRRVEIARALATN 151 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHHHHhcC
Confidence 9999988775 99999987532211111112346778999999988777766 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 597 P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+ ..+|++++|+++
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 209 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEG 209 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999887754 489999999999765 569999999864
No 163
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2e-38 Score=350.15 Aligned_cols=200 Identities=21% Similarity=0.262 Sum_probs=169.2
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc------------
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------------ 509 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~------------ 509 (1099)
.+.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+-
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 3 ENKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred CccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 35799999999996 46799999999999999999999999999999999999999999999998531
Q ss_pred -------cccccEEEEecCCCCCc-ccHHHHhccCCC-CCCcCCcCCHHHHHHHHHhcCChhHH-hcCCCCcccCCCCCc
Q 001329 510 -------DLNKEIFYVPQRPYTAV-GTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDEL 579 (1099)
Q Consensus 510 -------~~r~~i~~v~Q~p~l~~-~Ti~eni~~~~~-~~~~~~~~~~~~i~~~l~~~~l~~~~-~~~p~~~~~~~g~~L 579 (1099)
.++++++|+||++.++. .|++||+.++.. ..........+++.++++.+|+.+.. ++.+ .+|
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~L 153 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYP--------VHL 153 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccC
Confidence 23568999999998876 599999986421 11111112345678899999998764 5555 489
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .||+|++|+++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 228 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999999999999999999999887654 4899999999999887 58999999864
No 164
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.7e-38 Score=342.33 Aligned_cols=198 Identities=31% Similarity=0.426 Sum_probs=163.6
Q ss_pred EEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC---------cccc
Q 001329 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLN 512 (1099)
Q Consensus 445 I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~~r 512 (1099)
|+++||++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 7899999999643 279999999999999999999999999999999999999999999999964 1245
Q ss_pred ccEEEEecCC--CCC-cccHHHHhccCCCCCCcCC-cCCHHH-HHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHH
Q 001329 513 KEIFYVPQRP--YTA-VGTLRDQLIYPLTSDQEVE-PLTHGG-MVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1099)
Q Consensus 513 ~~i~~v~Q~p--~l~-~~Ti~eni~~~~~~~~~~~-~~~~~~-i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1099)
+.++|+||+| .++ ..|++||+.++........ ....++ ..++++.+++. ++.++.+ .+||||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~qr 153 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYP--------HELSGGQRQR 153 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCc--------hhcCHHHHHH
Confidence 6899999999 333 5799999976432111100 011122 24788899995 5667666 3899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 587 laIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++|||||+.+|+++||||||++||+.+++.+.+.+++ . |.|+|++||+++.+. .+|++++|+++
T Consensus 154 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 222 (228)
T cd03257 154 VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAG 222 (228)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCC
Confidence 9999999999999999999999999999999888764 2 899999999999887 69999999864
No 165
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-38 Score=368.45 Aligned_cols=184 Identities=26% Similarity=0.329 Sum_probs=158.6
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c-----c----ccccEEEEecCCCCCc-c
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D----LNKEIFYVPQRPYTAV-G 527 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~----~r~~i~~v~Q~p~l~~-~ 527 (1099)
.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . + .+++++||||++.++. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999999964 1 1 1357999999998875 6
Q ss_pred cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001329 528 TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1099)
Q Consensus 528 Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTS 607 (1099)
|++||+.++............+++.++++.+|+.++.+++|. +||||||||++|||||+.+|++|||||||+
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~--------~LSgGq~QRv~LArAL~~~P~iLLLDEPts 193 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD--------ELSGGMRQRVGLARALAINPDILLMDEAFS 193 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcc--------cCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 999999986432211111234567889999999999898884 899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 608 AVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 608 aLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+||+.++..+++.+++ .|+|+|+|||+++.+. .+|+|++|+++
T Consensus 194 ~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G 241 (400)
T PRK10070 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241 (400)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999887753 4899999999999874 69999999864
No 166
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.5e-38 Score=333.74 Aligned_cols=192 Identities=28% Similarity=0.438 Sum_probs=167.1
Q ss_pred EEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEec
Q 001329 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520 (1099)
Q Consensus 445 I~~~~v~~~y~~~----~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q 520 (1099)
++++||++.|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+|+||
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------~i~~~~q 73 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------SIAYVSQ 73 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------EEEEEec
Confidence 4789999999754 3799999999999999999999999999999999999999999999998 6999999
Q ss_pred CCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCC
Q 001329 521 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKP 597 (1099)
Q Consensus 521 ~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P 597 (1099)
+|.+++.|++||+.++... ..++..++++.+++.++++..|.+..+ ....+||||||||++||||++.+|
T Consensus 74 ~~~l~~~t~~enl~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 74 EPWIQNGTIRENILFGKPF-------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred CchhccCcHHHHhccCCCc-------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999986421 234566788888998888877653322 345789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHH---hcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 598 KFAILDECTSAVTTDMEERFCA-KVR---AMGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 598 ~iliLDEpTSaLD~~~~~~l~~-~l~---~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+++||||||++||+.+.+.+.+ +++ +.|.|+|++||+++.+..+|++++|+++
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G 203 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCC
Confidence 9999999999999999988876 443 2479999999999998889999999863
No 167
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.9e-38 Score=358.65 Aligned_cols=199 Identities=25% Similarity=0.274 Sum_probs=168.9
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 517 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~ 517 (1099)
..|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|
T Consensus 3 ~~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 3 VAIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred cEEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 3689999999995 4679999999999999999999999999999999999999999999999964 234678999
Q ss_pred EecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001329 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1099)
Q Consensus 518 v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1099)
+||++.++. .|++||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+++
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRV--------ALLSGGMKRRLTLARALIND 153 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCch--------hhCCHHHHHHHHHHHHHhcC
Confidence 999998774 699999975322111111112345677899999988877766 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 597 P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||+|++|+++
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G 211 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESG 211 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999888765 4899999999999885 69999999864
No 168
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3.4e-38 Score=341.69 Aligned_cols=198 Identities=24% Similarity=0.384 Sum_probs=169.9
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~ 516 (1099)
..|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ..+++.++
T Consensus 6 ~~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 6 PLLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred ceEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4699999999995 4679999999999999999999999999999999999999999999999864 12456899
Q ss_pred EEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
|+||++.++..|++||+.++..... .....+++.++++.+++. ...++.+ .+||||||||++|||||+.
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRN--QQPDPAIFLDDLERFALPDTILTKNI--------AELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcC--CChHHHHHHHHHHHcCCChHHhcCCc--------ccCCHHHHHHHHHHHHHhc
Confidence 9999999888899999987432111 112345677899999996 4666655 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCCC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGEG 651 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~g 651 (1099)
+|+++||||||++||+.+...+.+.+++ .|.|+|++||+++.+..||++++|++.+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~ 214 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHA 214 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEeccc
Confidence 9999999999999999999998887664 3899999999999988899999997543
No 169
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-38 Score=353.55 Aligned_cols=200 Identities=22% Similarity=0.290 Sum_probs=172.4
Q ss_pred CcEEEEeeEEEcCC-----CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------cc
Q 001329 443 NYIEFSGVKVVTPT-----GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SD 510 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~-----~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~ 510 (1099)
+.++++|+++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 46899999999974 2579999999999999999999999999999999999999999999999864 12
Q ss_pred ccccEEEEecCCC--CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001329 511 LNKEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1099)
Q Consensus 511 ~r~~i~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1099)
+++.++|+||+|. ++..|+.||+.++...........++++.++++.+|+.++.++.|. +||||||||++
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LS~G~~qrv~ 154 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPH--------LLSGGQKQRVA 154 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcc--------cCCHHHHHHHH
Confidence 4678999999984 5556899999886432211111234568889999999999888874 89999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 589 IARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+..||++++|+++
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G 220 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSG 220 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECC
Confidence 99999999999999999999999999999887764 389999999999998889999999864
No 170
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-38 Score=348.74 Aligned_cols=199 Identities=22% Similarity=0.264 Sum_probs=166.6
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-----CCccEEEeCCCCc--------
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS-------- 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~~-------- 509 (1099)
+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+-
T Consensus 5 ~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 5 PKMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred cEEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5799999999995 4579999999999999999999999999999999999974 6899999999641
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCc-CCcCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1099)
.+++.++|+||++.++..|+.||+.++...... ......+++.++++.+++.+. .++.+ .+||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgGq~ 155 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESA--------LGLSGGQQ 155 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc--------ccCCHHHH
Confidence 235789999999988888999999875321111 011234567888999998643 33333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMG 224 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999988875 3789999999999874 69999999864
No 171
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-38 Score=341.52 Aligned_cols=200 Identities=30% Similarity=0.464 Sum_probs=173.4
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v 518 (1099)
++++|+++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 4789999999755679999999999999999999999999999999999999999999999964 2345679999
Q ss_pred ecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHcc
Q 001329 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 519 ~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
||++.++..|++||+.++... ..++++.+.++.+++.+.++.+|.+... .+..+||||||||++|||||+.
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~ 154 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPD------ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK 154 (236)
T ss_pred CCCChhhcchHHHHHhhcCCC------CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999886432 2345567778888998888877643322 2467899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+|+++||||||++||+.+...+.+.+++. |.|+|++||+++.+..||++++|+++
T Consensus 155 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g 211 (236)
T cd03253 155 NPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDG 211 (236)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999998887642 88999999999999889999999864
No 172
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3e-38 Score=340.74 Aligned_cols=195 Identities=22% Similarity=0.345 Sum_probs=164.3
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c-----c-ccccEEE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D-LNKEIFY 517 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~-~r~~i~~ 517 (1099)
|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . + .++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 47899999996 4579999999999999999999999999999999999999999999999964 1 1 2467999
Q ss_pred EecCCCCCcc-cHHHHhccCCCCCCcCCcCCHHHHHHHHHhc-CChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 518 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNV-DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 518 v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~-~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
+||++.++.. |++||+.++..... .....+++.++++.+ ++.+..++.+ .+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLA--------GTLSGGEQQMLAIARALMS 149 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCch--------hhCCHHHHHHHHHHHHHhc
Confidence 9999987765 99999987643221 112344566777777 4666666655 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..+|++++|+++
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 208 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERG 208 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCC
Confidence 9999999999999999999999988764 489999999999986 469999999864
No 173
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.9e-38 Score=366.12 Aligned_cols=198 Identities=23% Similarity=0.310 Sum_probs=172.7
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .+++++++|
T Consensus 3 ~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 589999999996 5789999999999999999999999999999999999999999999999964 245678999
Q ss_pred EecCCCC-CcccHHHHhccCCCCC--Cc--CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001329 518 VPQRPYT-AVGTLRDQLIYPLTSD--QE--VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1099)
Q Consensus 518 v~Q~p~l-~~~Ti~eni~~~~~~~--~~--~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1099)
|+|++.+ +..|++||+.++...+ .. ......+++.++++.+++.++.++.+ .+||||||||++||||
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~--------~~LSgGerQRv~IArA 153 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV--------TSLSGGERQRVLLARA 153 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHH
Confidence 9999987 5689999998864321 00 01224567889999999999888866 3899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 593 L~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|+++|++|||||||++||+.++.++++++++ .|+|+|++||+++.+ +.||++++|+++
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999998887764 489999999999998 579999999875
No 174
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.8e-38 Score=338.57 Aligned_cols=192 Identities=26% Similarity=0.331 Sum_probs=164.1
Q ss_pred EEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----c-----cccccEE
Q 001329 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S-----DLNKEIF 516 (1099)
Q Consensus 447 ~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~-----~~r~~i~ 516 (1099)
++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 468899886 4679999999999999999999999999999999999999999999999864 0 1356899
Q ss_pred EEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
|++|++.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI--------YELSGGEQQRVALARAILK 151 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh--------hhCCHHHHHHHHHHHHHHc
Confidence 9999998876 699999987532211111123456788999999988877766 3899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEE
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSL 647 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l 647 (1099)
+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+..||++++|
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999988765 389999999999988889999874
No 175
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-38 Score=345.95 Aligned_cols=199 Identities=23% Similarity=0.252 Sum_probs=165.4
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc--C---CccEEEeCCCC--------c
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVG--------S 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--p---~~G~I~i~g~~--------~ 509 (1099)
+.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+ .
T Consensus 3 ~~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 4689999999996 4679999999999999999999999999999999999986 4 68999999954 1
Q ss_pred cccccEEEEecCCCCCc-ccHHHHhccCCCCCCcC-CcCCHHHHHHHHHhcCChhHH----hcCCCCcccCCCCCcChHH
Q 001329 510 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLL----DRYPPEKEINWGDELSLGE 583 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~l~~~~----~~~p~~~~~~~g~~LSGGq 583 (1099)
.+++.++|+||++.++. .|+.||+.++....... ....++++.++++.+++.+.+ ++.+ .+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~ 153 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNA--------MELSGGQ 153 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc--------CcCCHHH
Confidence 24678999999998876 69999998653221111 112235677889999986432 3323 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|||++|||||+.+|+++||||||++||+.++..+.+.+++. +.|+|++||+++.+ ..||++++|+++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMG 223 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999998887753 78999999999987 569999999864
No 176
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-38 Score=351.16 Aligned_cols=198 Identities=23% Similarity=0.266 Sum_probs=167.6
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc--------cccccE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEI 515 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~~r~~i 515 (1099)
+|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- .+++.+
T Consensus 1 ml~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 378999999996 46799999999999999999999999999999999999999999999999641 235679
Q ss_pred EEEecCCC--CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 516 ~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
+|+||+|. ++..|+.+|+.++............+++.++++.+++.++.++.+ .+||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrl~laraL 151 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI--------QCLSHGQKKRVAIAGAL 151 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCc--------hhCCHHHHHHHHHHHHH
Confidence 99999985 456789999987532211111112345778999999988877765 38999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+.+|+++||||||++||+.++..+.+.+++ .|.|+|+|||+++.+. .+|++++|+++
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G 212 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQG 212 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999888764 4899999999999884 69999999864
No 177
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-38 Score=351.51 Aligned_cols=198 Identities=25% Similarity=0.358 Sum_probs=169.5
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc--------cccccEE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIF 516 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~~r~~i~ 516 (1099)
|+++||++.|+++.++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- .+++.|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 78999999997556799999999999999999999999999999999999999999999999541 2457899
Q ss_pred EEecCC--CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 517 YVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 517 ~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
|+||+| .++..|+.||+.++............+++.++++.+++.++.++.|. +||||||||++||||++
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPH--------HLSGGQKKRVAIAGILA 153 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChh--------hCCHHHHHHHHHHHHHh
Confidence 999997 46678999999875321111111223567889999999988887763 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G 213 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDG 213 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999887764 3899999999999876 69999999864
No 178
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-38 Score=348.55 Aligned_cols=237 Identities=19% Similarity=0.200 Sum_probs=183.9
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-----CCccEEEeCCCC--------c
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG--------S 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~--------~ 509 (1099)
+.|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ .
T Consensus 9 ~~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 9 TVLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred eEEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 4799999999995 4579999999999999999999999999999999999986 489999999853 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1099)
.++++++|++|++.++..|+.||+.++...... ....++++.++++.+++.+.+..... ....+||||||||++|
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~----~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGY-KGDMDELVERSLRQAALWDEVKDKLK----QSGLSLSGGQQQRLCI 162 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCc-chHHHHHHHHHHHHhCchhhHHHHhc----CCcccCCHHHHHHHHH
Confidence 235689999999988878999999886432211 11223456677888888543321110 1134899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCCCceEEeecCCCccccc
Q 001329 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGEGEWRVHDKRDGSSVVT 666 (1099)
Q Consensus 590 ARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~g~~~~~~~~~~~~~~~ 666 (1099)
||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..||++++|+++. +
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~---~----------- 228 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVEL---T----------- 228 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeccc---c-----------
Confidence 9999999999999999999999999999988865 268999999999976 4689999998420 0
Q ss_pred cccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhc
Q 001329 667 KSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAA 715 (1099)
Q Consensus 667 ~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~ 715 (1099)
...++.|++++.++.++++. .|.|+|+++++.+
T Consensus 229 ---------------~~~~~~g~i~~~~~~~~~~~-~~~~~~~~~~~~~ 261 (264)
T PRK14243 229 ---------------EGGGRYGYLVEFDRTEKIFN-SPQQQATRDYVSG 261 (264)
T ss_pred ---------------cccccCceEEEeCCHHHHHh-CCCcHHHHHHhhh
Confidence 00122344455555566665 4789999988765
No 179
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.3e-38 Score=349.93 Aligned_cols=199 Identities=25% Similarity=0.376 Sum_probs=168.8
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c--------cccc
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNK 513 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~~r~ 513 (1099)
..|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4699999999995 4679999999999999999999999999999999999999999999999854 1 1356
Q ss_pred cEEEEecCCCCCcc-cHHHHhccCCCCCC-cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001329 514 EIFYVPQRPYTAVG-TLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1099)
Q Consensus 514 ~i~~v~Q~p~l~~~-Ti~eni~~~~~~~~-~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1099)
.++|+||++.++.. |+.||+.++..... .......+++.++++.+++.+..++.|. +||||||||++|||
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LSgGq~qrv~lar 156 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPS--------ELSGGMARRAALAR 156 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChh--------hCCHHHHHHHHHHH
Confidence 79999999988764 99999987532111 1111123467788999999988887763 89999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 592 AL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||+.+|+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+. .||++++|+++
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G 220 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADK 220 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECC
Confidence 99999999999999999999999998887764 2899999999998775 58999999864
No 180
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-38 Score=345.90 Aligned_cols=198 Identities=25% Similarity=0.296 Sum_probs=165.5
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC------cccc
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG------SDLN 512 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~------~~~r 512 (1099)
.++++||++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..++
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 5899999999964 5799999999999999999999999999999999999974 79999999964 2346
Q ss_pred ccEEEEecCCCCC-cccHHHHhccCCCCCCc--CCcCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHHH
Q 001329 513 KEIFYVPQRPYTA-VGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1099)
Q Consensus 513 ~~i~~v~Q~p~l~-~~Ti~eni~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~----~~~~p~~~~~~~g~~LSGGqrQ 585 (1099)
+.|+|+||+|.++ ..|+.||+.++...... ......+++.++++.+++.+. .++.+ .+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG~~q 153 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPA--------GKLSGGQQQ 153 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc--------ccCCHHHHH
Confidence 7899999999754 57999999875321111 111234567889999998643 34433 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 586 RlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 221 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999999999999999988865 3799999999999874 69999999864
No 181
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-38 Score=352.16 Aligned_cols=200 Identities=27% Similarity=0.384 Sum_probs=171.8
Q ss_pred CcEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCc---cEEEeCCCC------cccc
Q 001329 443 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS---GHIAKPGVG------SDLN 512 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~---G~I~i~g~~------~~~r 512 (1099)
..|+++|+++.|++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.+ ...+
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 46999999999964 3579999999999999999999999999999999999999988 899999964 1345
Q ss_pred ccEEEEecCCC--CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001329 513 KEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1099)
Q Consensus 513 ~~i~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1099)
++++|+||+|. ++..|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~LS~G~~qrv~la 155 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPA--------NLSGGQKQRVAIA 155 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcc--------cCCHHHHHHHHHH
Confidence 78999999984 5678999999876332211111223567889999999998888874 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 591 RAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G 219 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDG 219 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999887754 389999999999999889999999864
No 182
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-39 Score=327.01 Aligned_cols=199 Identities=26% Similarity=0.304 Sum_probs=175.3
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v 518 (1099)
++++.+++++|++-..+++||||+++.||++||.||||+||||++|+|++++.|++|.|.+||.| ...|++||++
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 47889999999875669999999999999999999999999999999999999999999999986 3568999999
Q ss_pred ecCCCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001329 519 PQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1099)
Q Consensus 519 ~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1099)
+-+..++ ..|++|||.|....++......+.++.++.+.+++.+.+++.. .+||-||||||+|||||+++|
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv--------~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV--------GEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHH--------hhhchhhHHHHHHHHHHhcCC
Confidence 9666565 4699999998655444444456778899999999999998865 389999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 598 KFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 598 ~iliLDEpTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++++|||||||||..+...+.+.++ +.|+++|+.||.++.++ .||++++++++
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~G 209 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKG 209 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecC
Confidence 9999999999999999998877655 45999999999999997 79999999875
No 183
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=4e-38 Score=360.19 Aligned_cols=199 Identities=25% Similarity=0.293 Sum_probs=170.2
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 517 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~ 517 (1099)
..|+++||++.|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ ...++.+||
T Consensus 40 ~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 40 VAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred eeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEE
Confidence 4699999999995 4679999999999999999999999999999999999999999999999975 235678999
Q ss_pred EecCCCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001329 518 VPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1099)
Q Consensus 518 v~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1099)
+||++.++ ..|+.||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+++
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~--------~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARV--------SDLSGGMKRRLTLARALIND 190 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCCh--------hhCCHHHHHHHHHHHHHhcC
Confidence 99999876 5699999985322111111112345678899999988777765 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 597 P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|+++||||||+|||+.++.++.+.+++ .|+|+|++||+++.+. .||+|++|+++
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G 248 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAG 248 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999988765 4899999999999885 69999999864
No 184
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-37 Score=339.39 Aligned_cols=200 Identities=26% Similarity=0.417 Sum_probs=172.0
Q ss_pred EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 445 I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
|+++|+++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643 379999999999999999999999999999999999999999999999954 234678999
Q ss_pred EecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHc
Q 001329 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~ 594 (1099)
+||++.++..|++||+.++... ...+++.+.++..++.++++.+|.+... ....+||||||||++|||||+
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 154 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPG------ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL 154 (234)
T ss_pred eCCCCeeccccHHHHhhccCCC------CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh
Confidence 9999999889999999886432 2344566777788888888776533221 245689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+..||++++|+++
T Consensus 155 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G 212 (234)
T cd03251 155 KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDG 212 (234)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCC
Confidence 99999999999999999999999988865 389999999999999889999999875
No 185
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-38 Score=348.64 Aligned_cols=200 Identities=20% Similarity=0.200 Sum_probs=167.7
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC--------
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------- 508 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------- 508 (1099)
.+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 17 ~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 45799999999996 46799999999999999999999999999999999999975 89999999954
Q ss_pred ccccccEEEEecCCCCCcccHHHHhccCCCCCCc--CCcCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChH
Q 001329 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLG 582 (1099)
Q Consensus 509 ~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~----~~~~p~~~~~~~g~~LSGG 582 (1099)
..+++.++|+||+|.++..|+.||+.++...... ......+++.++++.+++.+. .++.+ .+||||
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG 167 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPG--------TGLSGG 167 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCc--------ccCCHH
Confidence 1245789999999998888999999875321111 011124567889999999653 33333 489999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||||++|||||+.+|++|||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G 238 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLG 238 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999999988865 3789999999999884 68999999864
No 186
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3.5e-38 Score=363.91 Aligned_cols=186 Identities=27% Similarity=0.327 Sum_probs=160.1
Q ss_pred CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCC----C------cc---cc-ccEEEEecCC
Q 001329 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV----G------SD---LN-KEIFYVPQRP 522 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~----~------~~---~r-~~i~~v~Q~p 522 (1099)
...+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. + .+ .| ++++||||++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 457899999999999999999999999999999999999999999999984 2 11 22 5799999999
Q ss_pred CCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001329 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1099)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1099)
.+++ .|++||+.++............+++.++++.+|+.++.+++|. +||||||||++|||||+.+|+++|
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~--------~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPG--------ELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8876 7999999987432211111234567889999999999888884 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 602 LDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 602 LDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
||||||+||+.++.++++.+.+ .++|+|+||||++.+ +.+|+|++|+++
T Consensus 188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G 241 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGG 241 (382)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999887653 489999999999986 579999999875
No 187
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-38 Score=353.05 Aligned_cols=199 Identities=26% Similarity=0.353 Sum_probs=167.9
Q ss_pred cEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc----------
Q 001329 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------- 509 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~----~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~---------- 509 (1099)
.|+++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+-
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 47899999999632 4699999999999999999999999999999999999999999999999641
Q ss_pred cccccEEEEecCC--CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHH
Q 001329 510 DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1099)
..++.++|+||+| .++..|+.||+.++............+++.++++.++++ ++.++.+ .+||||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qr 153 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSP--------FELSGGQMRR 153 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCc--------ccCCHHHHHH
Confidence 2346799999998 466789999998753211111112334678899999997 6777766 3899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 587 laIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++|||||+.+|++|||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 154 l~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G 221 (287)
T PRK13641 154 VAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHG 221 (287)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999998887764 4899999999999874 79999999864
No 188
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=8.7e-38 Score=335.55 Aligned_cols=195 Identities=22% Similarity=0.312 Sum_probs=166.6
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEec
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~Q 520 (1099)
++++||++.|+. .++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 368999999952 5689999999999999999999999999999999999999999999965 234678999999
Q ss_pred CCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
+|.++. .|+.||+.++...........++++.++++.+++++..++.|. +||||||||++||||++.+|++
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE--------QLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc--------cCCHHHHHHHHHHHHHhcCCCE
Confidence 998876 5999999875321111111234567889999999988888774 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+||||||++||+.++..+.+.+++ .|.|+|+|||+++.+. .+|++++|+++
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g 205 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQG 205 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECC
Confidence 999999999999999998887754 3899999999999875 68999999864
No 189
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-38 Score=346.68 Aligned_cols=199 Identities=22% Similarity=0.241 Sum_probs=165.4
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc--C---CccEEEeCCCCc--------
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS-------- 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--p---~~G~I~i~g~~~-------- 509 (1099)
..|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+-
T Consensus 11 ~~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 11 EVYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred ceEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 4799999999996 4579999999999999999999999999999999999987 3 699999999641
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCcC-CcCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~l~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1099)
.+++.++|+||++.++..|+.||+.++....... .....+++.++++.+++.+. .++.+ .+||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~--------~~LS~Gq~ 161 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQA--------LSLSGGQQ 161 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCc--------ccCCHHHH
Confidence 3456899999999988889999998753221110 11123456778888888643 23322 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||++|||||+.+|+++||||||++||+.++..+.+.+++. ++|+|+|||+++.+. .+|++++|+++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G 230 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMG 230 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999888753 789999999999875 68999999864
No 190
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5.5e-38 Score=342.68 Aligned_cols=197 Identities=27% Similarity=0.393 Sum_probs=168.4
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEec
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~Q 520 (1099)
++++|+++.|+ ++++++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 i~i~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFG-SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEEC-CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 47899999996 4579999999999999999999999999999999999999999999999965 123568999999
Q ss_pred CCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
+|.++. .|+.||+.+.............+++.++++.+++.++.++.+ .+|||||+||++|||||+.+|++
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP--------NQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 998886 499999987543211111123456788999999988888766 38999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 600 AILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+||||||++||+.+++.+.+.+++ . |+|+|++||+++.+ +.||++++++++
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g 207 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNG 207 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECC
Confidence 999999999999999999888764 2 79999999999986 469999999864
No 191
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=6.4e-38 Score=348.14 Aligned_cols=200 Identities=26% Similarity=0.356 Sum_probs=165.4
Q ss_pred CcEEEEeeEEEcCC--------CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------
Q 001329 443 NYIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------ 508 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~--------~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------ 508 (1099)
..|+++||++.|+. ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 46899999999952 2479999999999999999999999999999999999999999999999864
Q ss_pred ccccccEEEEecCCC--CC-cccHHHHhccCCCCCC-cCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHH
Q 001329 509 SDLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGE 583 (1099)
Q Consensus 509 ~~~r~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~~-~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGq 583 (1099)
...++.++|+||++. ++ ..|+.+|+.++..... .......+++.++++.+++. +..++.+ .+|||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~ 154 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP--------HMLAPGQ 154 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCc--------hhcCHHH
Confidence 122457999999984 33 3589999876432111 11112235678899999994 6666655 3899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G 226 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQG 226 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999999887764 3899999999999887 48999999864
No 192
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-38 Score=348.66 Aligned_cols=200 Identities=26% Similarity=0.330 Sum_probs=170.7
Q ss_pred CcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccE
Q 001329 443 NYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i 515 (1099)
+.++++|+++.|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.+
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 469999999999754 469999999999999999999999999999999999999999999999964 1346789
Q ss_pred EEEecCCC--CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 516 ~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
+|+||+|. ++..|+.+|+.++............+++.++++.+++.++.++.+ .+||||||||++||||+
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral 157 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP--------NALSGGQKQRVAIAGVL 157 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 99999984 455689999987643211111122356778999999988887766 38999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+..+|+|++|+++
T Consensus 158 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G 218 (269)
T PRK13648 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKG 218 (269)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECC
Confidence 999999999999999999999999887764 389999999999988889999999864
No 193
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-38 Score=347.46 Aligned_cols=199 Identities=23% Similarity=0.268 Sum_probs=165.6
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-----CCccEEEeCCCCc--------
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS-------- 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~~-------- 509 (1099)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+-
T Consensus 20 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 20 HILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred ceEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 4699999999996 4679999999999999999999999999999999999864 7999999998641
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCcCC-cCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~l~----~~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
.+++.++|+||++.++..|+.||+.++........ ...++.+.++++.+++. +..++.+ .+||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgGq~ 170 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSA--------LSLSGGQQ 170 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc--------ccCCHHHH
Confidence 24568999999999888899999987532111111 11234567788888874 3344444 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||++|||||+.+|+++||||||++||+.++..+.+.+++. +.|+|++||+++.+. .||++++|+++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G 239 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNG 239 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999888753 689999999999764 69999999864
No 194
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-38 Score=349.94 Aligned_cols=199 Identities=23% Similarity=0.301 Sum_probs=170.5
Q ss_pred cEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccE
Q 001329 444 YIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~--~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i 515 (1099)
.|+++||++.|++. .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 68999999999742 469999999999999999999999999999999999999999999999964 1346789
Q ss_pred EEEecCCC--CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 516 ~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
+|+||+|. ++..|+.||+.++............+++.++++.+++.++.++.|. +||||||||++|||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~lAraL 155 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPA--------RLSGGQKQRVAVAGII 155 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcc--------cCCHHHHHHHHHHHHH
Confidence 99999983 5678999999875322111111123457789999999988888763 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+.+|+++||||||++||+.+...+.+.+++ .|.|+|++||+++.+..+|+|++|+++
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G 216 (277)
T PRK13642 156 ALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAG 216 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 999999999999999999999999887753 389999999999998889999999864
No 195
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-38 Score=344.85 Aligned_cols=198 Identities=25% Similarity=0.299 Sum_probs=165.5
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-----CCccEEEeCCCC--------cc
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG--------SD 510 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~--------~~ 510 (1099)
.|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+ ..
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 589999999996 4679999999999999999999999999999999999997 489999999964 12
Q ss_pred ccccEEEEecCCCCCcccHHHHhccCCCCCCcCC-cCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHHHH
Q 001329 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQQ 585 (1099)
Q Consensus 511 ~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~l~----~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1099)
+++.++|++|++.++..|++||+.++........ ...++++.++++.++++ +..++.+ .+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq~q 154 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNA--------QAFSGGQQQ 154 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccCh--------hhCCHHHHH
Confidence 4678999999999888999999987532211111 11234677888888884 2333333 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 586 RlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|++|||||+.+|+++||||||++||+.++..+.+.+++. +.|+|+|||+++.+. .+|+|++|+++
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 222 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNG 222 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECC
Confidence 999999999999999999999999999999998888753 789999999999875 58999999864
No 196
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-38 Score=347.87 Aligned_cols=234 Identities=21% Similarity=0.240 Sum_probs=184.5
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC--------
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------- 508 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------- 508 (1099)
...|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 18 ~~~l~~~nl~~~~~-~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 18 HSVFEVEGVKVFYG-GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred CceEEEeeEEEEeC-CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 45799999999996 45799999999999999999999999999999999999863 69999999964
Q ss_pred ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001329 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 509 ~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1099)
..+++.++|+||++.++..|+.||+.++...... ....++.+.++++.+++.+. .++.+ .+||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LSgGq~ 167 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGY-KGNLDELVEDSLRRAAIWEEVKDKLKEKG--------TALSGGQQ 167 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCc-hHHHHHHHHHHHHHcccchhhHHHhcCCc--------ccCCHHHH
Confidence 1245789999999988878999999875321111 11123456678888887533 33333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCCCceEEeecCCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKRDG 661 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~~~~~~ 661 (1099)
||++|||||+.+|+++||||||++||+.++..+.+.+++. +.|+|++||+++.+. .||++++|++.....
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~------- 240 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEY------- 240 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccc-------
Confidence 9999999999999999999999999999999999888753 789999999999875 689999997421000
Q ss_pred ccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhc
Q 001329 662 SSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAA 715 (1099)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~ 715 (1099)
.+..|++++.++.++++.+ |.|+++++++..
T Consensus 241 ----------------------~~~~G~~~~~g~~~~~~~~-~~~~~~~~~~~~ 271 (274)
T PRK14265 241 ----------------------GKRRGKLVEFSPTEQMFGS-PQTKEAREYISG 271 (274)
T ss_pred ----------------------cccCceEEEeCCHHHHHhC-CCCHHHHHHhhh
Confidence 1223445555666666654 789999887653
No 197
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=345.64 Aligned_cols=200 Identities=27% Similarity=0.340 Sum_probs=170.5
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccE
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i 515 (1099)
...|+++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.+
T Consensus 9 ~~~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 9 DTTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred CceEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 34699999999996 4689999999999999999999999999999999999999999999999964 2345689
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCC-C---cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSD-Q---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~-~---~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1099)
+|+||++.++. .|+.||+.++.... . ......++++.++++.+++.++.++.|. +||||||||++||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~la 159 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD--------SLSGGERQRAWIA 159 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc--------cCCHHHHHHHHHH
Confidence 99999976654 59999998763211 0 0011234567889999999988888774 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 591 RAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+. .+|+|++|+++
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGG 224 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999998887754 3899999999999885 69999999864
No 198
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-38 Score=346.78 Aligned_cols=197 Identities=23% Similarity=0.281 Sum_probs=164.0
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC--------cc
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------SD 510 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~~ 510 (1099)
.++++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..
T Consensus 4 ~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 5899999999964 5799999999999999999999999999999999999974 79999999854 12
Q ss_pred ccccEEEEecCCCCCc-ccHHHHhccCCCCCCc-CCcCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001329 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 511 ~r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
+++.++|++|++.++. .|++||+.++...... .....++++.++++.+++.+ ..++.+ .+||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~ 154 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPG--------GGLSGGQQ 154 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc--------ccCCHHHH
Confidence 4568999999998776 6999999875322111 11122356778899999853 334433 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1099)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|+|||+++.+ +.||+|++|++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~ 222 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNL 222 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEec
Confidence 999999999999999999999999999999999888765 378999999999987 47999999974
No 199
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.6e-37 Score=336.26 Aligned_cols=203 Identities=26% Similarity=0.429 Sum_probs=165.1
Q ss_pred CCcEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccc
Q 001329 442 ANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNK 513 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~--~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~ 513 (1099)
.+.++++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4689999999999752 479999999999999999999999999999999999999999999999965 13456
Q ss_pred cEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcc---cCCCCCcChHHHHHHHHH
Q 001329 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMA 590 (1099)
Q Consensus 514 ~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~---~~~g~~LSGGqrQRlaIA 590 (1099)
.++|+||++.++..|+.||+.++.... ...++.+..+..++.++++.++.+.. .....+||||||||++||
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~------~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSC------SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCC------CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 899999999988899999998764321 11222233333344444444322111 112468999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 591 RAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|||+.+|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+..+|+|++|+++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 224 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCC
Confidence 999999999999999999999999999988875 368999999999999889999999864
No 200
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-38 Score=350.78 Aligned_cols=198 Identities=23% Similarity=0.309 Sum_probs=165.9
Q ss_pred EEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----------cc
Q 001329 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----------SD 510 (1099)
Q Consensus 445 I~~~~v~~~y~~~----~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----------~~ 510 (1099)
|+++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 7899999999742 469999999999999999999999999999999999999999999999964 12
Q ss_pred ccccEEEEecCC--CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHH
Q 001329 511 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1099)
Q Consensus 511 ~r~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1099)
+++.|+|+||+| .++..|++||+.++............+.+.++++.+++. ++.++.+ .+||||||||+
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv 154 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNP--------FELSGGQMRRV 154 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccCCHHHHHHH
Confidence 456799999998 567789999998753211111111234567788999996 4556655 48999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 588 aIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|||||+.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 221 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKG 221 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999888764 4899999999999875 68999999864
No 201
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-38 Score=343.76 Aligned_cols=199 Identities=22% Similarity=0.266 Sum_probs=164.9
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCc---CcC--CccEEEeCCCCc--------
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL---WPL--VSGHIAKPGVGS-------- 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl---~~p--~~G~I~i~g~~~-------- 509 (1099)
..|+++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+ .+| ++|+|.++|.+-
T Consensus 2 ~~l~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEECC-EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 36899999999954 6799999999999999999999999999999999997 455 589999999641
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCcC-CcCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~l~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1099)
.+++.++|+||++.++..|+.||+.++....... ....++++.++++.+++.+. .++.+ .+||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~ 152 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESA--------FALSGGQQ 152 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCc--------ccCCHHHH
Confidence 2356799999999888889999998753221110 11233567788999998643 33333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
||++|||||+.+|+++||||||++||+.+++.+.+.+++ .++|+|++||+++.+ ..+|++++|+++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G 221 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMG 221 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECC
Confidence 999999999999999999999999999999999988875 378999999999987 569999999864
No 202
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-38 Score=347.02 Aligned_cols=200 Identities=22% Similarity=0.236 Sum_probs=167.3
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-----CCccEEEeCCCCc-------
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~~------- 509 (1099)
...|+++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+-
T Consensus 18 ~~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 35799999999995 4689999999999999999999999999999999999996 5899999999641
Q ss_pred -cccccEEEEecCCCCCcccHHHHhccCCCCCCc-CCcCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHH
Q 001329 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGE 583 (1099)
Q Consensus 510 -~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~----~~~~~p~~~~~~~g~~LSGGq 583 (1099)
..++.++|+||++.++..|++||+.++...... .....++++.++++.+++.+ ..++.+ .+|||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~--------~~LS~G~ 168 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSA--------LTLSGGQ 168 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCc--------ccCCHHH
Confidence 236689999999988888999999876322111 11123456778899999854 333333 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|||++||||++++|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..||++++|+++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 238 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLG 238 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999999888765 378999999999987 569999999864
No 203
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=343.87 Aligned_cols=198 Identities=29% Similarity=0.396 Sum_probs=168.6
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLG-GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 478999999996 4679999999999999999999999999999999999999999999999964 124567999
Q ss_pred EecCCCC-CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc--
Q 001329 518 VPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY-- 594 (1099)
Q Consensus 518 v~Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~-- 594 (1099)
+||++.+ +..|++||+.++...........++++.++++.+++.++.++.+. +||||||||++|||||+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYP--------QLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcc--------cCCHHHHHHHHHHHHHhcc
Confidence 9999977 567999999875432111111234567889999999988877763 89999999999999999
Q ss_pred ----cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 595 ----HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 595 ----~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.+...+.+.+++ .|.|+|++||+++.+. .||+|++|+++
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 217 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQG 217 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 59999999999999999999998877653 4899999999999875 79999999864
No 204
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-38 Score=351.75 Aligned_cols=200 Identities=24% Similarity=0.254 Sum_probs=166.6
Q ss_pred CcEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----------
Q 001329 443 NYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------- 508 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~----~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------- 508 (1099)
+.|+++|+++.|++. .++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 569999999999653 259999999999999999999999999999999999999999999999853
Q ss_pred -ccccccEEEEecCCC--CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001329 509 -SDLNKEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 509 -~~~r~~i~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
..+++.++|+||+|. ++..|++||+.++............+++.++++.+++. ++.++.+ .+||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~--------~~LS~Gq~ 156 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSP--------FELSGGQK 156 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCCh--------hhCCHHHH
Confidence 124568999999983 56679999998753211111111234567788999994 5666655 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
||++|||||+.+|++|||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+ +.||++++|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 227 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEG 227 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999998887653 389999999999976 569999999864
No 205
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.6e-37 Score=338.85 Aligned_cols=200 Identities=28% Similarity=0.448 Sum_probs=170.7
Q ss_pred EEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEE
Q 001329 445 IEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1099)
Q Consensus 445 I~~~~v~~~y~~--~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~ 516 (1099)
++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 468999999964 3579999999999999999999999999999999999999999999999964 12356799
Q ss_pred EEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHH
Q 001329 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL 593 (1099)
|+||++.++..|++||+.++... ...+++.+.++..++.++.+.+|.+... ....+||||||||++||||+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPD------ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCC------CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 99999988888999999886432 1234556677778888877776643221 23568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G 213 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNG 213 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 999999999999999999999999988765 489999999999998899999999875
No 206
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-38 Score=343.41 Aligned_cols=199 Identities=21% Similarity=0.209 Sum_probs=166.3
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCCc--------
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~~-------- 509 (1099)
..++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.+-
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 3 IKMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred cEEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4689999999996 46799999999999999999999999999999999999875 799999998641
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCc-CCcCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
..++.++|+||++.++..|+.||+.++...... ......+++.++++.+++.+ ..++.+ .+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~ 153 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSA--------LKLSGGQQ 153 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCc--------ccCCHHHH
Confidence 235779999999998889999999875322111 01122345678899998853 334433 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||++||||++.+|+++||||||++||+.++..+.+.+++. +.|+|++||+++.+. .+|++++|+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G 222 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMG 222 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999999888753 789999999999875 58999999864
No 207
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=8.8e-38 Score=337.20 Aligned_cols=198 Identities=25% Similarity=0.422 Sum_probs=170.1
Q ss_pred EEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc---------ccc
Q 001329 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLN 512 (1099)
Q Consensus 445 I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~---------~~r 512 (1099)
++++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 6899999999642 5799999999999999999999999999999999999999999999999641 235
Q ss_pred ccEEEEecCCCCCc-ccHHHHhccCCCCCCc-CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001329 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1099)
Q Consensus 513 ~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1099)
+.++|+||+|.++. .|+.||+.++...... ......+++.++++.+++.++.++.|. +||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~lS~G~~qrv~la 153 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPH--------NLSGGQKQRVAIA 153 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChh--------hCCHHHHHHHHHH
Confidence 78999999998876 6999999875322111 111123467889999999988888774 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 591 RAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||++.+|+++||||||++||+.+++.+.+.+++ .++|+|++||+++....||+|++|+++
T Consensus 154 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g 217 (220)
T TIGR02982 154 RALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDG 217 (220)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 999999999999999999999999998887754 489999999999988889999999864
No 208
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-38 Score=319.36 Aligned_cols=205 Identities=21% Similarity=0.260 Sum_probs=175.4
Q ss_pred cEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-ccccccEEEEecC
Q 001329 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQR 521 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~~r~~i~~v~Q~ 521 (1099)
.+.+++++.+|++. ..+|+|+|++|.+||.+.++||||||||||+++++|+.+|+.|+|.+||.. ..-...=|.|||+
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 35678899999642 359999999999999999999999999999999999999999999999963 1112345899999
Q ss_pred CCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001329 522 PYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1099)
Q Consensus 522 p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1099)
+-++ ..++.||+.|+....+..+....+.+.+.+..+||+++-++++. +||||||||+.|||||..+|++|
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~--------qLSGGmrQRvGiARALa~eP~~L 154 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIW--------QLSGGMRQRVGIARALAVEPQLL 154 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceE--------eecchHHHHHHHHHHhhcCcceE
Confidence 9765 57999999999876655444455677889999999999888874 89999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHHHh-cCEEEEEeCCCceEEe
Q 001329 601 ILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVAF-HDVVLSLDGEGEWRVH 656 (1099)
Q Consensus 601 iLDEpTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~~~~~ 656 (1099)
+||||++|||.-+++++++++ ++.|+.+++|||+++..-+ ++++++|+++.+..++
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence 999999999999999887765 4579999999999998764 8999999987666654
No 209
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.3e-37 Score=340.40 Aligned_cols=198 Identities=25% Similarity=0.347 Sum_probs=169.1
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc-------cccccEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-------~~r~~i~ 516 (1099)
.|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++
T Consensus 2 ~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFD-GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 589999999996 46799999999999999999999999999999999999999999999999641 1235699
Q ss_pred EEecCCCCCcc-cHHHHhccCCCCCC--------cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHH
Q 001329 517 YVPQRPYTAVG-TLRDQLIYPLTSDQ--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1099)
Q Consensus 517 ~v~Q~p~l~~~-Ti~eni~~~~~~~~--------~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1099)
|+||++.++.+ |++||+.++..... ......++++.++++.+++.+..++.+ .+||||||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Ge~qrv 152 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA--------GLLSHGQKQWL 152 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHH
Confidence 99999988875 99999987532110 000113456788999999988777765 38999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 588 aIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+||||++.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .||+|++++++
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 218 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQG 218 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999998875 3789999999999886 69999999864
No 210
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.4e-37 Score=343.75 Aligned_cols=199 Identities=21% Similarity=0.295 Sum_probs=163.9
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----c------c-
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S------D- 510 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~------~- 510 (1099)
..++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ - .
T Consensus 5 ~~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 5 PLLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred ceEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 36999999999964 679999999999999999999999999999999999999999999999964 1 1
Q ss_pred ---ccccEEEEecCCC--CC-cccHHHHhccCCCCCCc-CCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChH
Q 001329 511 ---LNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLG 582 (1099)
Q Consensus 511 ---~r~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGG 582 (1099)
.++.++|+||++. ++ ..|+.+|+.++...... ......+++.++++.+++. +..++.+ .+||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G 155 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLP--------TTFSGG 155 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCC--------ccCCHH
Confidence 2456999999984 33 35888888653211110 0011245677889999996 3566655 489999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||||++|||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|+|||+++.+. .+|+|++|+++
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g 228 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQG 228 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999999999999999998887653 3899999999999986 69999999864
No 211
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=341.12 Aligned_cols=198 Identities=25% Similarity=0.354 Sum_probs=168.2
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc------------cc
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------------DL 511 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~------------~~ 511 (1099)
.++++|+++.|+ ++++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- ..
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 478999999995 46799999999999999999999999999999999999999999999998631 23
Q ss_pred cccEEEEecCCCCCc-ccHHHHhccCC-CCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001329 512 NKEIFYVPQRPYTAV-GTLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1099)
Q Consensus 512 r~~i~~v~Q~p~l~~-~Ti~eni~~~~-~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1099)
++.++|+||++.++. .|+.||+.+.. ...........+++.++++.+|++++.++.|. +||||||||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LS~G~~qrv~l 152 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPL--------HLSGGQQQRVAI 152 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh--------hCCHHHHHHHHH
Confidence 568999999998876 59999997521 11111111123567889999999988888774 899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 590 ARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g 217 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENG 217 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999887764 4899999999999885 59999999864
No 212
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=342.00 Aligned_cols=199 Identities=23% Similarity=0.267 Sum_probs=165.1
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc--C---CccEEEeCCCC--------c
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVG--------S 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--p---~~G~I~i~g~~--------~ 509 (1099)
..++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.+ .
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 4 PILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred ceEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 3689999999996 4579999999999999999999999999999999999953 6 59999999854 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCcC-CcCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~l~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
.+++.++|+||++.++..|+.||+.++....... ....++++.++++.+++.+ ..++.+ .+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~ 154 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSA--------LGLSGGQQ 154 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCc--------ccCCHHHH
Confidence 2467899999999988899999998753211111 1122456777889998753 334433 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
||++||||++.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+ ..||++++|+++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDG 223 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999988875 368999999999876 469999999864
No 213
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.1e-37 Score=340.85 Aligned_cols=202 Identities=24% Similarity=0.343 Sum_probs=176.3
Q ss_pred CCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------cccccc
Q 001329 442 ANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 514 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~ 514 (1099)
.+.|+++|+++.|++. +++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+++.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 5679999999999753 579999999999999999999999999999999999999999999999964 235678
Q ss_pred EEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHH
Q 001329 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMAR 591 (1099)
Q Consensus 515 i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIAR 591 (1099)
++|++|+|.++.+|++||+..... ...+++.++++.+++.++++.+|.+.+. .++.+||||||||++|||
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lar 169 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECK-------CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLAR 169 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCC-------CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHH
Confidence 999999999998999999864311 1345677888888999888888753332 356799999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 592 AL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|++++|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..||+|++|+++
T Consensus 170 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G 230 (257)
T cd03288 170 AFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRG 230 (257)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECC
Confidence 99999999999999999999999999888865 489999999999999889999999864
No 214
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.6e-37 Score=331.86 Aligned_cols=198 Identities=18% Similarity=0.314 Sum_probs=167.8
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c---------cccccE
Q 001329 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S---------DLNKEI 515 (1099)
Q Consensus 446 ~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~---------~~r~~i 515 (1099)
.+.|+.+.|+++.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 567899999866789999999999999999999999999999999999999999999999864 1 134679
Q ss_pred EEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHH
Q 001329 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARL 592 (1099)
Q Consensus 516 ~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARA 592 (1099)
+|++|+|.++..|++||+.++.. ...++..++++.+++.+.++..|.+..+ ....+||||||||++||||
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lara 154 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSP-------FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARA 154 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCc-------CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHH
Confidence 99999999888899999987642 1234556788888988777766543322 2356899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHH--HH---HhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 593 FYHKPKFAILDECTSAVTTDMEERFCA--KV---RAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 593 L~~~P~iliLDEpTSaLD~~~~~~l~~--~l---~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
++.+|+++||||||++||+.+...+.+ .+ ++.|.|+|++||+++.+..+|++++|+++
T Consensus 155 l~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 155 LYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217 (218)
T ss_pred HhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCC
Confidence 999999999999999999999987776 33 34589999999999999889999999753
No 215
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-38 Score=340.25 Aligned_cols=197 Identities=23% Similarity=0.349 Sum_probs=168.5
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEec
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~Q 520 (1099)
|+++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|++|
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 468999999964 579999999999999999999999999999999999999999999999964 123568999999
Q ss_pred CCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
++.++. .|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPS--------QLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHhcCCCE
Confidence 998886 4999999865322111111234567889999999988888774 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .+|++++++++
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G 207 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKG 207 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 999999999999999999887754 3899999999999875 68999999864
No 216
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=9e-38 Score=352.72 Aligned_cols=198 Identities=22% Similarity=0.320 Sum_probs=170.1
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v 518 (1099)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..+++.+||+
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 378999999995 4679999999999999999999999999999999999999999999999964 2346789999
Q ss_pred ecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001329 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1099)
Q Consensus 519 ~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1099)
||+|.++. .|+.||+.+.....+.......+++.++++.+|+.+..++.+ .+||||||||++|||||+++|
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKI--------GQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCch--------hhCCHHHHHHHHHHHHHhcCC
Confidence 99998876 499999986432211111122456788999999998887765 389999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 598 KFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 598 ~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+++||||||++||+.+.+.+.+.+++. ++|+|++||+++.+. .||+|++|+++
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G 208 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKG 208 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999887753 799999999999775 69999999864
No 217
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.9e-37 Score=329.98 Aligned_cols=187 Identities=26% Similarity=0.375 Sum_probs=161.0
Q ss_pred CCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------cccccc
Q 001329 442 ANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 514 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~ 514 (1099)
.+.++++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+.++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 4 HGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 4579999999999753 479999999999999999999999999999999999999999999999964 234678
Q ss_pred EEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 515 i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
++|+||+|.++.+|++||+.+... ...+++.++++ +++.+ .+||||||||++||||++
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-------~~~~~~~~~l~-------~~~~~--------~~LS~G~~qrv~laral~ 141 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-------YSDEEIYGALR-------VSEGG--------LNLSQGQRQLLCLARALL 141 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-------CCHHHHHHHhh-------ccCCC--------CcCCHHHHHHHHHHHHHh
Confidence 999999999988999999975321 23344555544 22323 489999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+..+|++++|+++
T Consensus 142 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g 199 (207)
T cd03369 142 KRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAG 199 (207)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 99999999999999999999999988875 389999999999998889999999864
No 218
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=342.75 Aligned_cols=197 Identities=21% Similarity=0.224 Sum_probs=164.1
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-----CCccEEEeCCCC-c-------cc
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-S-------DL 511 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-~-------~~ 511 (1099)
-+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+ . .+
T Consensus 6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 37899999995 4679999999999999999999999999999999999986 479999999964 1 24
Q ss_pred cccEEEEecCCCCCcccHHHHhccCCCCCCc--CCcCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHHH
Q 001329 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1099)
Q Consensus 512 r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~----~~~~p~~~~~~~g~~LSGGqrQ 585 (1099)
++.++|+||++.++..|+.||+.++...... .....++++.++++.+++.+. .++.+ .+|||||||
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq~q 156 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSA--------FELSGGQQQ 156 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcCh--------hhCCHHHHH
Confidence 6789999999988888999999875221111 011233567788999999653 33333 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 586 RlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|++|||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|+|||+++.+. .+|++++|+++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 224 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSG 224 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECC
Confidence 99999999999999999999999999999999888765 3799999999999875 69999999864
No 219
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.6e-37 Score=345.10 Aligned_cols=199 Identities=28% Similarity=0.429 Sum_probs=165.7
Q ss_pred cEEEEeeEEEcCC--------CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c-----
Q 001329 444 YIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S----- 509 (1099)
Q Consensus 444 ~I~~~~v~~~y~~--------~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~----- 509 (1099)
.|+++||++.|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 5899999999974 4689999999999999999999999999999999999999999999999964 1
Q ss_pred ---cccccEEEEecCCC--CC-cccHHHHhccCCCCC-CcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcCh
Q 001329 510 ---DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSL 581 (1099)
Q Consensus 510 ---~~r~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSG 581 (1099)
.+++.++|+||++. ++ ..|+.||+.++.... ........+++.++++.+++. +..++.+ .+|||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~LS~ 154 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRP--------PQLSG 154 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCC--------ccCCh
Confidence 24678999999983 33 469999986542211 101112234678899999996 5666655 48999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||||++|||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 155 Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G 228 (268)
T PRK10419 155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNG 228 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999998887753 3899999999999886 68999999864
No 220
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-37 Score=335.45 Aligned_cols=195 Identities=21% Similarity=0.309 Sum_probs=166.3
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c---cccccEEEEec
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S---DLNKEIFYVPQ 520 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~---~~r~~i~~v~Q 520 (1099)
++++||++.|++ .+ .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++|+||
T Consensus 2 l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 2 LKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred eEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 789999999963 22 49999999999999999999999999999999999999999999965 1 12467999999
Q ss_pred CCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
++.++. .|+.||+.++...........++++.++++.+|++++.++.|. +||||||||++||||++.+|++
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~laral~~~p~l 150 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG--------QLSGGQRQRVALARCLVREQPI 150 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc--------cCCHHHHHHHHHHHHHhcCCCE
Confidence 998876 5999999876321100111235678899999999998888884 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 151 llLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 206 (232)
T PRK10771 151 LLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADG 206 (232)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999998887754 3889999999999875 68999999864
No 221
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=341.49 Aligned_cols=198 Identities=21% Similarity=0.251 Sum_probs=164.9
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC--------cc
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------SD 510 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~~ 510 (1099)
.|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYG-DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEEC-CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 589999999996 45799999999999999999999999999999999999863 69999999964 12
Q ss_pred ccccEEEEecCCCCCcccHHHHhccCCCCCCcC-CcCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHHH
Q 001329 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQQ 585 (1099)
Q Consensus 511 ~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~l~~----~~~~~p~~~~~~~g~~LSGGqrQ 585 (1099)
+++.++|+||++.++..|+.||+.++....... ....++++.++++.+++.+ ..++.+ .+|||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~G~~q 153 (250)
T PRK14240 82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSA--------LGLSGGQQQ 153 (250)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCC--------CCCCHHHHH
Confidence 467899999999888899999998753221111 1123456777888888753 233433 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 586 RlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G 221 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNG 221 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999888765 3789999999999775 68999999864
No 222
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=342.93 Aligned_cols=198 Identities=26% Similarity=0.312 Sum_probs=164.5
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC--------cc
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------SD 510 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~~ 510 (1099)
.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYG-SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeC-CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 689999999995 46799999999999999999999999999999999999987 49999999864 12
Q ss_pred ccccEEEEecCCCCCc-ccHHHHhccCCCCCCc--CCcCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHH
Q 001329 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 583 (1099)
Q Consensus 511 ~r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~----~~~~p~~~~~~~g~~LSGGq 583 (1099)
++++++|+||++.++. .|+.||+.++...... .....++++.++++.+++.+. .++.+ .+|||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~ 154 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYP--------SNLSGGQ 154 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccCh--------hhCCHHH
Confidence 4568999999998876 4999999875321110 011223467788999988532 33333 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+. .||+|++|+++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 224 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLG 224 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999888765 3689999999999875 69999999864
No 223
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=345.52 Aligned_cols=200 Identities=21% Similarity=0.225 Sum_probs=164.1
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-----CCccEEEeCCCC--------
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1099)
...++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 22 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 22 KVVFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred ceEEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 34799999999996 4579999999999999999999999999999999999987 699999999954
Q ss_pred ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCC-cCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHH
Q 001329 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGE 583 (1099)
Q Consensus 509 ~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~l~----~~~~~~p~~~~~~~g~~LSGGq 583 (1099)
..+++.++|+||++.++..|+.||+.++........ ...++.+.++++.+++. +..++.+ .+|||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--------~~LSgGe 172 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNA--------YGLSGGQ 172 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCc--------ccCCHHH
Confidence 124678999999999888899999987532111101 11123456677777543 3334433 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||++|||||+.+|+++||||||++||+.+...+.+.+++. ++|+|++||+++.+. .||++++|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G 242 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNG 242 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999998887653 789999999999875 69999999864
No 224
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-37 Score=340.97 Aligned_cols=198 Identities=21% Similarity=0.326 Sum_probs=169.6
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
+++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 478999999996 4679999999999999999999999999999999999999999999999964 134567999
Q ss_pred EecCCCCCcc-cHHHHhccCCCCC----CcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001329 518 VPQRPYTAVG-TLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1099)
Q Consensus 518 v~Q~p~l~~~-Ti~eni~~~~~~~----~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1099)
+||++.++.+ |+.||+.++.... ........+++.++++.+++.++.++.+. +||||||||++||||
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~lara 152 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT--------DLSGGQRQRAFLAMV 152 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcc--------cCCHHHHHHHHHHHH
Confidence 9999987765 9999998753210 10111234567889999999988887763 899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 593 L~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999888764 4899999999999875 68999999864
No 225
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-37 Score=340.70 Aligned_cols=199 Identities=22% Similarity=0.309 Sum_probs=167.9
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c-----c-ccccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D-LNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~-~r~~i 515 (1099)
..++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . . .+..+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 3699999999995 4689999999999999999999999999999999999999999999999964 1 1 23469
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCC-------Cc--------CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCc
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSD-------QE--------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDEL 579 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~-------~~--------~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~L 579 (1099)
+|+||+|.++. .|+.||+.++.... .. ......+++.++++.+|+.++.++.+ .+|
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~L 154 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA--------GNL 154 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh--------hhC
Confidence 99999998887 49999999753210 00 00012245777899999988877766 389
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||||||++|||||+.+|+++||||||++||+.++..+.+.+.+ .|+|+|++||+++.+. .||++++++++
T Consensus 155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999887753 3899999999999885 69999999864
No 226
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-37 Score=340.51 Aligned_cols=198 Identities=21% Similarity=0.264 Sum_probs=164.9
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC-------ccc
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------SDL 511 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------~~~ 511 (1099)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..+
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 589999999996 46799999999999999999999999999999999999986 59999999853 134
Q ss_pred cccEEEEecCCCCCcccHHHHhccCCCCCCcC-CcCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHHHH
Q 001329 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQR 586 (1099)
Q Consensus 512 r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~l~~~----~~~~p~~~~~~~g~~LSGGqrQR 586 (1099)
++.++|+||++.++..|+.||+.++....... ....++++.++++.+++.+. .++.+ .+||||||||
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~LS~G~~qr 153 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHA--------FGLSGGQQQR 153 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCc--------ccCCHHHHHH
Confidence 67899999999988899999998753221111 11123456778888887542 33333 4899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 587 laIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++|||||+.+|+++||||||++||+.+...+.+.+++. +.|+|++||+++.+. .||++++|+++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G 220 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMG 220 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999998888753 689999999999876 58999999864
No 227
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=339.24 Aligned_cols=199 Identities=22% Similarity=0.234 Sum_probs=165.6
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCC-----ccEEEeCCCC--------c
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVG--------S 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-----~G~I~i~g~~--------~ 509 (1099)
+.|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+ .
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 4689999999995 467999999999999999999999999999999999999997 6999999854 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCcC-CcCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~l~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1099)
.+++.++|+||+|.++..|+.||+.++....... ....++.+.++++.+++.+. .++.+ .+||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~Gq~ 153 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSG--------LALSGGQQ 153 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCc--------ccCCHHHH
Confidence 3467899999999988889999998764221111 11123456677888887543 33333 58999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .||++++|+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G 222 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTG 222 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCC
Confidence 999999999999999999999999999999998888765 3799999999999876 57999999864
No 228
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-37 Score=344.12 Aligned_cols=200 Identities=23% Similarity=0.277 Sum_probs=165.9
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC-------c
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------S 509 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------~ 509 (1099)
...++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ .
T Consensus 19 ~~~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 19 APAMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred CcEEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 35789999999996 56899999999999999999999999999999999999986 79999999854 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCc-CCcCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1099)
.+++.++|+||+|.++..|++||+.++...... ......+.+.++++.+++.+. .++.+ .+||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~--------~~LSgGq~ 169 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSP--------FRLSGGQQ 169 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCc--------ccCCHHHH
Confidence 346789999999998889999999875321110 011112345677888888643 23333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|++||+++.+. .+|++++|+++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G 238 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDG 238 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999998887653 689999999999875 68999999864
No 229
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.1e-37 Score=336.28 Aligned_cols=194 Identities=25% Similarity=0.359 Sum_probs=163.1
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c------cccccEEE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEIFY 517 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~~r~~i~~ 517 (1099)
|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 47899999996 4579999999999999999999999999999999999999999999999854 1 12467999
Q ss_pred EecCCCCCcc-cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcC-ChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 518 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 518 v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~-l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
+||++.++.. |+.||+.++...... ...+...++++.++ +.+..++.+ .+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~---~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPR---RSRKIPDEIYELFPVLKEMLGRRG--------GDLSGGQQQQLAIARALVT 148 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCc---chHHHHHHHHHHHHhHHHHhhCCh--------hhCCHHHHHHHHHHHHHhc
Confidence 9999988765 999999875332111 12234566777776 455556655 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|+++||||||++||+.++..+.+.+.+ .|+|+|++||+++.+. .+|++++++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g 208 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERG 208 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999887764 3899999999999887 59999999864
No 230
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=342.26 Aligned_cols=198 Identities=22% Similarity=0.255 Sum_probs=164.6
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC--------c
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------S 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~ 509 (1099)
+.++++||++.|+ ++++++|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|.+ .
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 4699999999995 46799999999999999999999999999999999999985 48999999864 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCcCC-cCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~l~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
.+++.++|+||++.++..|+.||+.++........ ...++.+.++++.+++.+ ..++.+ .+||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~G~~ 156 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSA--------LGLSGGQQ 156 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCc--------ccCCHHHH
Confidence 24568999999999888999999987532111101 112345678889998853 333333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1099)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+. .||++++|+.
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~ 224 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFST 224 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEec
Confidence 999999999999999999999999999999999988865 3689999999999875 6899999974
No 231
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.1e-37 Score=352.14 Aligned_cols=186 Identities=25% Similarity=0.267 Sum_probs=159.5
Q ss_pred CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEEecCCCCCc-ccHH
Q 001329 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVPQRPYTAV-GTLR 530 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v~Q~p~l~~-~Ti~ 530 (1099)
++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..++++++|+||++.++. .|++
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 4579999999999999999999999999999999999999999999999964 234678999999998876 5999
Q ss_pred HHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 001329 531 DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610 (1099)
Q Consensus 531 eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD 610 (1099)
||+.+............++++.++++.+++.+..++.+ .+||||||||++|||||+++|+++||||||++||
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPV--------GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 99987432211111123456888999999988777766 3899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 611 TDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 611 ~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+.++..+.+.+++ .|+|+|++||+++.+. .||+|++|+++
T Consensus 157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 157 PRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHG 200 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 9999999887764 4899999999999885 69999999864
No 232
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=337.12 Aligned_cols=198 Identities=23% Similarity=0.303 Sum_probs=167.0
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i~ 516 (1099)
.++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 589999999995 4689999999999999999999999999999999999999999999999964 11356899
Q ss_pred EEecCCCCCc-ccHHHHhccCCCCCC-cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 517 YVPQRPYTAV-GTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~-~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
|+||++.++. .|+.||+.++..... ........++.++++.+++.+..++.+ .+||||||||++||||++
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG--------QSLSGGERRRVEIARALA 153 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcch--------hhCCHHHHHHHHHHHHHh
Confidence 9999998776 599999987532111 111122356788899999987766655 489999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..+|++++|+++
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G 213 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQG 213 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCC
Confidence 99999999999999999999988776653 589999999999766 568999999864
No 233
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-37 Score=339.20 Aligned_cols=199 Identities=22% Similarity=0.229 Sum_probs=164.8
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC--------c
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------S 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~ 509 (1099)
..|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+ .
T Consensus 5 ~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 5 IILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred ceEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4799999999995 46799999999999999999999999999999999999763 48999999864 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCcCC-cCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~l~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1099)
..++.++|+||++.++..|++||+.++........ ...++.+.++++.+++.+. .++. ..+||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~ 155 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDS--------ALSLSGGQQ 155 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcC--------hhhCCHHHH
Confidence 23567999999999888899999987643211111 1223457778888888542 2332 248999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||++||||++.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLG 224 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECC
Confidence 999999999999999999999999999999999888765 3689999999999885 69999999864
No 234
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=4e-37 Score=338.95 Aligned_cols=198 Identities=22% Similarity=0.310 Sum_probs=162.5
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----c---------
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S--------- 509 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~--------- 509 (1099)
.|+++||++.|+ +.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ -
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYG-GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeC-CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 689999999996 3579999999999999999999999999999999999999999999999853 1
Q ss_pred -cccccEEEEecCCCC---CcccHHHHhccCCC-CCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHH
Q 001329 510 -DLNKEIFYVPQRPYT---AVGTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGE 583 (1099)
Q Consensus 510 -~~r~~i~~v~Q~p~l---~~~Ti~eni~~~~~-~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGq 583 (1099)
..++.++|++|++.. +..|+.+|+.+... .........++++.++++.+++. +..++.+ .+|||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--------~~LSgG~ 153 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLP--------RAFSGGM 153 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCc--------hhcCHHH
Confidence 113569999999852 23588888854211 00000012245678899999996 4666655 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||++|||||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .+|++++|+++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G 225 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQG 225 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999999887754 3899999999999887 68999999864
No 235
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-37 Score=381.57 Aligned_cols=201 Identities=23% Similarity=0.302 Sum_probs=166.9
Q ss_pred CCcEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----------
Q 001329 442 ANYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------- 508 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~---~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------- 508 (1099)
.+.|+++|+++.|++ +.++++||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 357999999999963 2479999999999999999999999999999999999999999999998741
Q ss_pred ------c---ccc-ccEEEEecCC--CCC-cccHHHHhccCCCCC-CcCCcCCHHHHHHHHHhcCCh---hHHhcCCCCc
Q 001329 509 ------S---DLN-KEIFYVPQRP--YTA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE---YLLDRYPPEK 571 (1099)
Q Consensus 509 ------~---~~r-~~i~~v~Q~p--~l~-~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~l~---~~~~~~p~~~ 571 (1099)
. .+| ++|+||+|+| .++ ..|+.||+.++...+ ........+++.++++.+|+. +..+++|.
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~-- 167 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH-- 167 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc--
Confidence 0 122 4799999998 344 469999998764321 111112345788899999995 35677774
Q ss_pred ccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEE
Q 001329 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLS 646 (1099)
Q Consensus 572 ~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~ 646 (1099)
+|||||||||+|||||+.+|++|||||||++||+.+++++.+++++ .|+|+|+||||++.+. .||+|++
T Consensus 168 ------~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 168 ------QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred ------cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 8999999999999999999999999999999999999998887754 3899999999999875 6999999
Q ss_pred EeCC
Q 001329 647 LDGE 650 (1099)
Q Consensus 647 l~~~ 650 (1099)
|+++
T Consensus 242 l~~G 245 (623)
T PRK10261 242 MYQG 245 (623)
T ss_pred eeCC
Confidence 9863
No 236
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-37 Score=345.84 Aligned_cols=200 Identities=21% Similarity=0.220 Sum_probs=165.7
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-----CCccEEEeCCCC--------
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1099)
...|+++||++.|+ +.++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+
T Consensus 37 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 37 KPHVVAKNFSIYYG-EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred ceEEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 34699999999995 4579999999999999999999999999999999999864 499999999854
Q ss_pred ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCC-cCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHH
Q 001329 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGE 583 (1099)
Q Consensus 509 ~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~l~----~~~~~~p~~~~~~~g~~LSGGq 583 (1099)
..+++.++|+||+|.++..|+.||+.++........ ...++++.++++.+++. +..++.+ .+|||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LSgGq 187 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNA--------LGLSGGQ 187 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCCh--------hhCCHHH
Confidence 124678999999999888899999987642211111 11234567788888874 3334433 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||++|||||+.+|+++||||||++||+.+...+.+.+++. +.|+|++||+++.+. .+|++++|+++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G 257 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEG 257 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999888753 689999999999875 69999999864
No 237
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.3e-37 Score=339.43 Aligned_cols=197 Identities=30% Similarity=0.401 Sum_probs=168.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v 518 (1099)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 68999999995 4689999999999999999999999999999999999999999999999964 1335679999
Q ss_pred ecCCCC-CcccHHHHhccCCCCC-C---cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 519 PQRPYT-AVGTLRDQLIYPLTSD-Q---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 519 ~Q~p~l-~~~Ti~eni~~~~~~~-~---~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
||++.+ +..|+.||+.++.... . .......+++.++++.+++.+..++.+ .+||||||||++||||+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al 152 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM--------STLSGGERQRVHVARAL 152 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHHHHHHHHHH
Confidence 999864 4579999998753211 0 001123356788999999988877766 38999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+.+|+++||||||++||+.+...+.+.+++ .|.|+|++||+++.+ ..||+|++|+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGG 213 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999888765 389999999999998 579999999864
No 238
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.7e-37 Score=328.64 Aligned_cols=192 Identities=27% Similarity=0.363 Sum_probs=165.3
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v 518 (1099)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEEC-CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence 378999999995 4679999999999999999999999999999999999999999999999864 2346789999
Q ss_pred ecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001329 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1099)
Q Consensus 519 ~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1099)
+|++.++. .|+.||+.++..... ...++++.++++.+|+.++.++.+ .+||||||||++||||++++|
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHG---PGDDEALWEALAQVGLAGFEDVPV--------RQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcC---ccHHHHHHHHHHHcCCHHHhhCCh--------hhcCHHHHHHHHHHHHHhcCC
Confidence 99987665 699999987643221 124567888999999998877765 389999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEE
Q 001329 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSL 647 (1099)
Q Consensus 598 ~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l 647 (1099)
+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+.. .+|++++
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999888765 38999999999999854 4677766
No 239
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-37 Score=340.87 Aligned_cols=199 Identities=20% Similarity=0.260 Sum_probs=165.4
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCC-----ccEEEeCCCC--------c
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVG--------S 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-----~G~I~i~g~~--------~ 509 (1099)
+.|+++||++.|+ +.++|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+ .
T Consensus 6 ~~l~~~nl~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYD-TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeC-CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 4699999999995 357999999999999999999999999999999999999985 8999999854 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCc-CCcCCHHHHHHHHHhcCChhHH----hcCCCCcccCCCCCcChHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLL----DRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~~~----~~~p~~~~~~~g~~LSGGqr 584 (1099)
.+++.++|+||++.++..|+.||+.++...... .....++++.++++.+++.+++ ++.+ .+||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgGq~ 156 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSA--------LDLSGGQQ 156 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCc--------ccCCHHHH
Confidence 245679999999988889999999865321110 0111234577889999886533 3322 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||++|||||+++|+++||||||++||+.++..+.+.+++ .|.|+|+|||++..+. .||+|++|+++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~ 227 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGN 227 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccC
Confidence 999999999999999999999999999999999887764 4899999999999875 68999999863
No 240
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2e-36 Score=374.59 Aligned_cols=343 Identities=29% Similarity=0.471 Sum_probs=310.5
Q ss_pred CCCchhhhhcccccCCCceeecCCCeeEehhhHHHHhhHHHHHHHhcCCcchhHHhhcCHHHHHHHHHHHHhhhhhHHHH
Q 001329 735 PRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFI 814 (1099)
Q Consensus 735 ~~~~p~Ra~~lCri~iP~l~s~e~g~lv~c~~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~~~s~~ 814 (1099)
...+..+...+.+...|.+.+++.+.++...++++++|++++.++.++|.++.+++++|.+.|.+.++.|+++.++++++
T Consensus 72 ~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~ 151 (659)
T TIGR00954 72 NGVFLGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFI 151 (659)
T ss_pred CHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 33455678888888899999888888889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHH
Q 001329 815 APSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTW 894 (1099)
Q Consensus 815 n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~~~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~ 894 (1099)
|+.++|+++++...||+++++|++++|+++.+||++++.|++.+|+|||||+||++||+.++++++++++|++|++.++.
T Consensus 152 ~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~ 231 (659)
T TIGR00954 152 NSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSF 231 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCcchHHHHHHHHHHHHHHHhhcCCcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHHHH
Q 001329 895 RMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFREL 974 (1099)
Q Consensus 895 ~l~~~~g~~g~~~~~~~~~~~~~~lr~~~P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l 974 (1099)
.|....++..+.+++.++.+++.+.+.++|+++++..++++.||+||..|++.++|+|||++|+|++.|+..+++.++++
T Consensus 232 ~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l 311 (659)
T TIGR00954 232 KLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRL 311 (659)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhccchhhhhhhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 001329 975 LEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHR 1054 (1099)
Q Consensus 975 ~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~~k 1054 (1099)
.++..+..+.+.+++.+++++.+|.|.+++|.+++.+++...+.....-+.++.+..+.....++...++++++++..++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~ 391 (659)
T TIGR00954 312 VEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGR 391 (659)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877655532221011112344444444444444447899999999999
Q ss_pred HHHHhcChhhHHHHHHHHHHHhC
Q 001329 1055 KFVELSGGINRIFELEELLDAAQ 1077 (1099)
Q Consensus 1055 ~~~~laG~t~Rv~el~~~l~~~~ 1077 (1099)
+++++.|++.||.|++|..++++
T Consensus 392 ~i~~~~~~~~Ri~~ll~~~~~~~ 414 (659)
T TIGR00954 392 DMTRLAGFTARVDTLLQVLDDVK 414 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988865
No 241
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-37 Score=339.78 Aligned_cols=199 Identities=20% Similarity=0.244 Sum_probs=169.6
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~ 516 (1099)
..|+++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 6 ~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 4799999999996 4679999999999999999999999999999999999999999999999964 12356799
Q ss_pred EEecCCCCCc-ccHHHHhccCCCCC-C---cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001329 517 YVPQRPYTAV-GTLRDQLIYPLTSD-Q---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1099)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~-~---~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1099)
|+||++.++. .|+.||+.++.... . ......++++.++++.+++.++.++.+ .+||||||||++|||
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Gq~qrv~lar 156 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV--------DTLSGGQRQRAWIAM 156 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc--------ccCChHHHHHHHHHH
Confidence 9999998764 69999998753111 0 001122456788999999998888776 389999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 592 AL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|++.+|+++||||||++||+.+...+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREG 220 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999887754 388999999999976 569999999864
No 242
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-37 Score=334.55 Aligned_cols=196 Identities=18% Similarity=0.226 Sum_probs=164.6
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c------cccccEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~~r~~i~ 516 (1099)
.|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 689999999995 4679999999999999999999999999999999999999999999999964 1 1356799
Q ss_pred EEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhc-CChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV-DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~-~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
|+||++.++. .|+.||+.++..... .....+++.++++.+ ++.+..++.+ .+||||||||++||||++
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAE--RDQFQERIKWVYELFPRLHERRIQRA--------GTMSGGEQQMLAIGRALM 153 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccC--hhHHHHHHHHHHHHHHHHHHHHhCch--------hhCCHHHHHHHHHHHHHH
Confidence 9999998876 599999987532111 111234566677777 4666555554 489999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+ +.+|++++|+++
T Consensus 154 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENG 213 (237)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCC
Confidence 99999999999999999999998887754 489999999999865 579999999864
No 243
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=7.6e-37 Score=325.51 Aligned_cols=188 Identities=27% Similarity=0.404 Sum_probs=163.5
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEEe
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v~ 519 (1099)
++++||++.|+ ++++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++++++|+|
T Consensus 1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 47899999985 4679999999999999999999999999999999999999999999999865 23567899999
Q ss_pred cCCCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|++.++ ..|++||+.+.... ..++++.++++.+++.++.++.+ .+||||||||++||||++.+|+
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPV--------AQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred cccccCCCcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCch--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999775 57999999875321 24567888999999988777655 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhH-HHhcCEEEEE
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL-VAFHDVVLSL 647 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~-i~~~D~Il~l 647 (1099)
++||||||++||+.+++.+.+.+++ .|.|+|++||+... ...+++++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999988864 38999999998664 4577888876
No 244
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=341.42 Aligned_cols=198 Identities=23% Similarity=0.309 Sum_probs=165.4
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-----CCccEEEeCCCC--------
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1099)
.+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 37 ~~~l~i~~l~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 37 ETVIEARDLNVFYG-DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CceEEEEEEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 45699999999995 4679999999999999999999999999999999999997 689999999854
Q ss_pred ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHHH
Q 001329 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 509 ~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~----~~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
..+++.++|+||++.++..|+.||+.++...... ....++++.++++.+++. +..++.+ .+||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~--------~~LSgGe~ 186 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGY-DGDIDERVEESLRRAALWDEVKDQLDSSG--------LDLSGGQQ 186 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCC-cHHHHHHHHHHHHHcCCCchhHHHHhCCc--------ccCCHHHH
Confidence 1346789999999988878999999875322111 112345688899999985 3344444 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEE-EeC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLS-LDG 649 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~-l~~ 649 (1099)
||++|||||+.+|++|||||||++||+.++..+.+.+++. +.|+|++||+++.+. .+|++++ |++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~ 255 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTG 255 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeC
Confidence 9999999999999999999999999999999999888753 689999999999875 5899764 564
No 245
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=338.10 Aligned_cols=200 Identities=21% Similarity=0.243 Sum_probs=166.1
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC--------
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------- 508 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------- 508 (1099)
.+.|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.+
T Consensus 14 ~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 46799999999996 45799999999999999999999999999999999999875 79999998853
Q ss_pred --ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCC-cCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcCh
Q 001329 509 --SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSL 581 (1099)
Q Consensus 509 --~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~l~~----~~~~~p~~~~~~~g~~LSG 581 (1099)
..+++.++|+||++.++.+|++||+.++........ ...++++.++++.+++.+ ..++.+ .+|||
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~ 164 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLA--------FNLSG 164 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCc--------ccCCH
Confidence 124678999999999888899999987532111111 112456778888888753 333333 48999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .+.|+|+|||+++.+. .||++++|+++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G 236 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMG 236 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999888765 3689999999999885 69999999864
No 246
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-37 Score=336.69 Aligned_cols=198 Identities=24% Similarity=0.259 Sum_probs=165.4
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC--------cc
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------SD 510 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~~ 510 (1099)
.|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 589999999996 46799999999999999999999999999999999999984 89999999954 12
Q ss_pred ccccEEEEecCCCCCcccHHHHhccCCCCCCcC-CcCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHHH
Q 001329 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1099)
Q Consensus 511 ~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~l~~~----~~~~p~~~~~~~g~~LSGGqrQ 585 (1099)
+++.++|+||+|.++..|++||+.++....... ....++++.++++.+++.+. .++.+ .+|||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq~q 153 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPG--------TRLSGGQQQ 153 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCCh--------hhcCHHHHH
Confidence 467899999999988899999998753211111 11233457788899988643 33333 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 586 RlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+ ..+|++++++++
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G 221 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRG 221 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999988765 378999999999976 569999999864
No 247
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-38 Score=313.46 Aligned_cols=225 Identities=20% Similarity=0.252 Sum_probs=188.2
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--------------
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------------- 508 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------------- 508 (1099)
..++++|+.+.|. ...+|++|||+.++|+.+.|+|.|||||||++|+|.=+..|++|+|.++|..
T Consensus 5 ~~l~v~dlHK~~G-~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhcc-cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 4689999999994 5679999999999999999999999999999999999999999999999852
Q ss_pred -----ccccccEEEEecCCCCC-cccHHHHhccCCC-CCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcCh
Q 001329 509 -----SDLNKEIFYVPQRPYTA-VGTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSL 581 (1099)
Q Consensus 509 -----~~~r~~i~~v~Q~p~l~-~~Ti~eni~~~~~-~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSG 581 (1099)
..+|.+.++|||+-.+. ..|+.||+...-. .-+..+....++....|..+|+.+..+.||. .|||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~--------~LSG 155 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA--------HLSG 155 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc--------ccCc
Confidence 13578899999998776 4799999986421 1122223345677789999999999999994 8999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---HhcCcEEEEEccChhHHHh-cCEEEEEeCCCceEEee
Q 001329 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALVAF-HDVVLSLDGEGEWRVHD 657 (1099)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l---~~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~~~~~~ 657 (1099)
|||||++|||||+.+|+++++|||||||||+...++++.+ .+.|+|.++|||.+...+. +.++++++++
T Consensus 156 GQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G------- 228 (256)
T COG4598 156 GQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQG------- 228 (256)
T ss_pred hHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecc-------
Confidence 9999999999999999999999999999999988876654 4579999999999999986 5788877753
Q ss_pred cCCCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhc
Q 001329 658 KRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAA 715 (1099)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~ 715 (1099)
.+.|.|+.+++|.| |..|..++.+++
T Consensus 229 -------------------------------~iEE~G~P~qvf~n-P~S~RlkqFlss 254 (256)
T COG4598 229 -------------------------------KIEEEGPPEQVFGN-PQSPRLKQFLSS 254 (256)
T ss_pred -------------------------------eecccCChHHHhcC-CCCHHHHHHHHh
Confidence 33455677788886 788888888764
No 248
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=9.3e-37 Score=336.40 Aligned_cols=195 Identities=24% Similarity=0.326 Sum_probs=162.8
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC----CccEEEeCCCC---ccc-cccE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL----VSGHIAKPGVG---SDL-NKEI 515 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p----~~G~I~i~g~~---~~~-r~~i 515 (1099)
.|+++||++.| ++++++|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+ .+. ++.+
T Consensus 4 ~l~~~~l~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 4 QIELRNIALQA--AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred EEEEeCeEEEe--ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 58999999999 46799999999999999999999999999999999999999 99999999965 122 3579
Q ss_pred EEEecCCC-CC--cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChh---HHhcCCCCcccCCCCCcChHHHHHHHH
Q 001329 516 FYVPQRPY-TA--VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDELSLGEQQRLGM 589 (1099)
Q Consensus 516 ~~v~Q~p~-l~--~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~---~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1099)
+||||++. .+ ..|+.+|+.+....... ...++++.++++.+++.+ ..++.+ .+||||||||++|
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~LS~Gq~qrv~l 151 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCLALGK--PADDATLTAALEAVGLENAARVLKLYP--------FEMSGGMLQRMMI 151 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHHHcCC--ChHHHHHHHHHHHcCCCChhhhhhcCC--------cccCHHHHHHHHH
Confidence 99999984 23 35888887653211110 123467888999999976 345554 4899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 590 ARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||||+.+|++|||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G 217 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHG 217 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999998887754 3899999999999875 68999999864
No 249
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=5.3e-37 Score=335.59 Aligned_cols=198 Identities=24% Similarity=0.283 Sum_probs=162.5
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcC--cCCccEEEeCCCC-c-----c-ccccE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVG-S-----D-LNKEI 515 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~--~p~~G~I~i~g~~-~-----~-~r~~i 515 (1099)
|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+. +|++|+|.++|.+ . . .+..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 47899999996 467999999999999999999999999999999999994 7999999999964 1 1 23459
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCCCc-------CCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHH
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQE-------VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~-------~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1099)
+|+||+|.++. .|+.||+.+....... ......+++.++++.+++. +..++.+. .+||||||||
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------~~LS~G~~qr 152 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN-------EGFSGGEKKR 152 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc-------cCcCHHHHHH
Confidence 99999998776 4899998764221100 0011235678899999997 45555442 2599999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh--cCEEEEEeCC
Q 001329 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF--HDVVLSLDGE 650 (1099)
Q Consensus 587 laIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~--~D~Il~l~~~ 650 (1099)
++|||||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+.. +|++++|+++
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G 221 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDG 221 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCC
Confidence 9999999999999999999999999999999988765 38999999999998864 7999999864
No 250
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=9.6e-37 Score=329.66 Aligned_cols=193 Identities=27% Similarity=0.294 Sum_probs=167.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc--cccccEEEEecCC
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--DLNKEIFYVPQRP 522 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--~~r~~i~~v~Q~p 522 (1099)
++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- .-++.++|+||++
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 46899999986 46799999999999999999999999999999999999999999999999641 1125799999999
Q ss_pred CCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001329 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1099)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1099)
.++. .|++||+.++..... ..++++.++++.+++++..++.+. +||||||||++||||++.+|+++|
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLG----LPDSRIDEVLNIVDLTNTGKKKAK--------QFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred CccccCCHHHHHHHHHHHcC----CCHHHHHHHHHHcCCcHHHhhhHh--------hCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8765 699999986432111 235678889999999988877663 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 602 LDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 602 LDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||||++||+.+.+.+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 200 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEG 200 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCC
Confidence 9999999999999999888764 4889999999999874 69999999864
No 251
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=7.4e-37 Score=331.33 Aligned_cols=199 Identities=25% Similarity=0.371 Sum_probs=166.1
Q ss_pred cEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc---CCccEEEeCCCC---cccccc
Q 001329 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG---SDLNKE 514 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~---p~~G~I~i~g~~---~~~r~~ 514 (1099)
.+.++||++.|++. +++++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+ ...++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 36799999999764 689999999999999999999999999999999999999 999999999965 245678
Q ss_pred EEEEecCCCCCcc-cHHHHhccCCCCC--Cc-CCcCCHHHHHH-HHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001329 515 IFYVPQRPYTAVG-TLRDQLIYPLTSD--QE-VEPLTHGGMVE-LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1099)
Q Consensus 515 i~~v~Q~p~l~~~-Ti~eni~~~~~~~--~~-~~~~~~~~i~~-~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1099)
++|+||++.++.. |++||+.++.... .. .......++.+ .++.+++.+..++.+ .+||||||||++|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~l 154 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV--------KGISGGERRRVSI 154 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc--------cCcCHHHHHHHHH
Confidence 9999999988875 9999998753211 00 01111223444 788888887766655 4899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccCh--hHHHhcCEEEEEeCC
Q 001329 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRP--ALVAFHDVVLSLDGE 650 (1099)
Q Consensus 590 ARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l--~~i~~~D~Il~l~~~ 650 (1099)
|||++.+|+++||||||++||+.++..+.+.+++ .|.|+|++||++ .....+|++++|+++
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G 220 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSG 220 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999888764 488999999998 355689999999864
No 252
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=9.2e-37 Score=317.34 Aligned_cols=161 Identities=34% Similarity=0.584 Sum_probs=146.8
Q ss_pred EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 445 I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
|+++|+++.|+++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4789999999753 469999999999999999999999999999999999999999999999964 234678999
Q ss_pred EecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001329 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1099)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1099)
++|+|.++..|++||+ ||||||||++||||++.+|
T Consensus 81 ~~q~~~~~~~tv~~~l---------------------------------------------LS~G~~qrv~la~al~~~p 115 (173)
T cd03246 81 LPQDDELFSGSIAENI---------------------------------------------LSGGQRQRLGLARALYGNP 115 (173)
T ss_pred ECCCCccccCcHHHHC---------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 9999988888998886 8999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 598 ~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 116 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G 171 (173)
T cd03246 116 RILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDG 171 (173)
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999887754 488999999999998889999999864
No 253
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.2e-37 Score=324.98 Aligned_cols=187 Identities=23% Similarity=0.327 Sum_probs=162.7
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEEe
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v~ 519 (1099)
|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+|
T Consensus 2 l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 2 LDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEEEeC-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 78999999996 4579999999999999999999999999999999999999999999999965 23467899999
Q ss_pred cCCCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|++.++ ..|++||+.++.... ....++.++++.+++.+..++.+ .+||||||||++||||++++|+
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFS-----PGAVGITELCRLFSLEHLIDYPC--------GLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcC-----cchHHHHHHHHHcCCchhhhCCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 999875 579999998763211 12346788999999987766644 3799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEE
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVL 645 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il 645 (1099)
++||||||++||+.+.+.+.+.+++ .|.|+|++||+...+..+|.-+
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 9999999999999999999988764 4899999999999998887644
No 254
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-37 Score=335.88 Aligned_cols=199 Identities=22% Similarity=0.251 Sum_probs=164.0
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc--C---CccEEEeCCCCc--------
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS-------- 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--p---~~G~I~i~g~~~-------- 509 (1099)
..|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.+-
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 4 KIITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred ceEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4689999999996 4679999999999999999999999999999999999975 4 599999999641
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCcC-CcCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~l~----~~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
.+++.++|+||++.++..|+.+|+.++....... ....++++.++++.+++. +..++.+ .+||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~--------~~LS~Gq~ 154 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESA--------LSLSGGQQ 154 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCc--------ccCCHHHH
Confidence 2456899999999888889999998753211110 111234566778888764 2333333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|+|||+++.+. .+|+|++|+++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTG 223 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999888653 689999999999885 68999999864
No 255
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=338.80 Aligned_cols=200 Identities=21% Similarity=0.266 Sum_probs=166.7
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC--------
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------- 508 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------- 508 (1099)
.+.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 23 ~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 45799999999995 45799999999999999999999999999999999999884 89999999864
Q ss_pred ccccccEEEEecCCCCCcccHHHHhccCCCCCCc-CCcCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHH
Q 001329 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 583 (1099)
Q Consensus 509 ~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~~----~~~~p~~~~~~~g~~LSGGq 583 (1099)
..+++.++|+||++.++..|+.||+.++...... .....++++.++++.+++.+. .++.+ .+|||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq 173 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENA--------FGLSGGQ 173 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCc--------ccCCHHH
Confidence 1346789999999988888999999875321111 011123557788898888643 33333 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .||++++|+++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G 243 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMG 243 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999888765 3789999999999875 69999999864
No 256
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.8e-37 Score=325.76 Aligned_cols=174 Identities=25% Similarity=0.302 Sum_probs=147.5
Q ss_pred CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc--------cccccEEEEecCC--CCC
Q 001329 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIFYVPQRP--YTA 525 (1099)
Q Consensus 456 ~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~~r~~i~~v~Q~p--~l~ 525 (1099)
+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+- .+++.++|+||+| .++
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 456799999999999999999999999999999999999999999999998541 2356799999998 466
Q ss_pred cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCC
Q 001329 526 VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605 (1099)
Q Consensus 526 ~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEp 605 (1099)
..|++||+.++............+++.++++.+++.++.++.+. +||||||||++|||||+.+|+++|||||
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTH--------CLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChh--------hCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 78999999875321111111123467889999999988888773 8999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh---cCcEEEEEccChhH
Q 001329 606 TSAVTTDMEERFCAKVRA---MGTSCITISHRPAL 637 (1099)
Q Consensus 606 TSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~ 637 (1099)
|++||+.+++.+.+.+++ .|+|+|++||+++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999887764 48999999999864
No 257
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=336.70 Aligned_cols=200 Identities=29% Similarity=0.353 Sum_probs=165.5
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCC------CC------c
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VG------S 509 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g------~~------~ 509 (1099)
.+.++++|++++|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+ .
T Consensus 8 ~~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 45799999999995 56799999999999999999999999999999999999999997777665 32 1
Q ss_pred cccccEEEEecCCCCCc-ccHHHHhccCCCCCCcCC-cCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHH
Q 001329 510 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGE 583 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~l~~----~~~~~p~~~~~~~g~~LSGGq 583 (1099)
.+++.++|+||+|.++. .|+.||+.++........ ....+++.++++.+++.+ ..++.+ ..|||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~LS~G~ 158 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPA--------SQLSGGQ 158 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCc--------ccCCHHH
Confidence 34678999999998876 499999987632211111 112245778899999864 334433 4799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|||++||||++.+|+++||||||++||+.++..+.+.+.+ .+.|+|++||+++.+ ..||++++|+++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g 228 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNG 228 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999988865 368999999999988 579999999864
No 258
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.2e-36 Score=317.85 Aligned_cols=164 Identities=29% Similarity=0.434 Sum_probs=148.9
Q ss_pred EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEE
Q 001329 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1099)
Q Consensus 445 I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v 518 (1099)
|+++|+++.|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4789999999754 479999999999999999999999999999999999999999999999964 2346789999
Q ss_pred ecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 519 ~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
||+|.++..|++||+ + .+||||||||++||||++++|+
T Consensus 81 ~q~~~~~~~tv~~~i----------------------------------~--------~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 81 NQRPYLFDTTLRNNL----------------------------------G--------RRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred ccCCeeecccHHHhh----------------------------------c--------ccCCHHHHHHHHHHHHHhcCCC
Confidence 999988888998887 2 3799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..+|++++|+++
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g 172 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENG 172 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 9999999999999999999988865 389999999999999889999999864
No 259
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-36 Score=326.26 Aligned_cols=195 Identities=23% Similarity=0.302 Sum_probs=166.8
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC---ccccccEEEEe
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIFYVP 519 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---~~~r~~i~~v~ 519 (1099)
..++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|++
T Consensus 10 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 10 PLLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred ceEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEee
Confidence 4699999999995 4579999999999999999999999999999999999999999999999964 12345799999
Q ss_pred cCCCCCcc-cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|++.++.. |+.||+.++..... ...++.+.++++.+++.+..++.+ .+||||||||++||||++.+|+
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~ 157 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLAGYEDTLV--------RQLSAGQKKRLALARLWLSPAP 157 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChhhccCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99988765 99999976432111 113455678899999987776665 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1099)
++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 158 LWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999888764 4899999999999875 6899998863
No 260
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-36 Score=331.57 Aligned_cols=196 Identities=27% Similarity=0.388 Sum_probs=167.8
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEec
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~Q 520 (1099)
|+++|+++.|++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeCC--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 468999999863 48999999999999999999999999999999999999999999999965 123568999999
Q ss_pred CCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
++.++. .|+.||+.++...........++++.++++.+++.++.++.+. +||||||||++||||++.+|++
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE--------TLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcc--------cCCHHHHHHHHHHHHHHcCCCE
Confidence 998775 7999999875322111111234567889999999988888774 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++|||||++||+.+++.+.+.+++ .|+|+|++||++..+. .+|++++|+++
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G 206 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNG 206 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999887764 3899999999999876 59999999864
No 261
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=335.23 Aligned_cols=200 Identities=21% Similarity=0.187 Sum_probs=166.5
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCCc--------
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~~-------- 509 (1099)
..+.+++++++|. +.++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+-
T Consensus 7 ~~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 7 IVMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred ceEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4588999999884 46799999999999999999999999999999999999986 799999999641
Q ss_pred cccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001329 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1099)
.+++.++|+||++.++..|+.||+.++...... .....+++.++++.+++.+.+..... ....+||||||||++|
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~----~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLK----VSGLSLSGGQQQRLCI 160 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhh----CCcccCCHHHHHHHHH
Confidence 245679999999998889999999876432111 11234578889999998654322110 1234899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEe
Q 001329 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLD 648 (1099)
Q Consensus 590 ARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~ 648 (1099)
||||+++|+++||||||++||+.++.++.+.+++ .+.|+|++||+++.+. .||++++|+
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999988875 3789999999999764 699999997
No 262
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=334.51 Aligned_cols=198 Identities=23% Similarity=0.251 Sum_probs=161.1
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCC-----ccEEEeCCCCc--------c
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVGS--------D 510 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-----~G~I~i~g~~~--------~ 510 (1099)
.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+. .
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 589999999996 468999999999999999999999999999999999999874 89999998541 3
Q ss_pred ccccEEEEecCCCCCc-ccHHHHhccCCCCCCcC-CcCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001329 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 511 ~r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~l~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1099)
+++.++|+||++.++. .|+.||+.++....... .....+.+.+.++.+++.+. .++. ..+||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~ 154 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTP--------ATGLSGGQQ 154 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCC--------cccCCHHHH
Confidence 3568999999998876 59999998643211110 01112345556666766432 2222 358999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+. .+|++++|+++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVG 223 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999988865 3699999999999886 58999999864
No 263
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.9e-36 Score=335.42 Aligned_cols=199 Identities=19% Similarity=0.247 Sum_probs=168.5
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCC---ccEEEeCCCCc----------
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVGS---------- 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g~~~---------- 509 (1099)
+.|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+-
T Consensus 3 ~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 3 TIIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred cEEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 3689999999995 468999999999999999999999999999999999999986 49999999541
Q ss_pred -cccccEEEEecCCCCCc-ccHHHHhccCCCCCC--------cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCc
Q 001329 510 -DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQ--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDEL 579 (1099)
Q Consensus 510 -~~r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~--------~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~L 579 (1099)
.+++.++|+||++.++. .|+.||+.++..... .......+++.++++.+++.+..++.+. +|
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~L 153 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS--------TL 153 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc--------cc
Confidence 12457999999998776 699999987532110 0011234568889999999888887663 89
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|||||||++||||++.+|++|||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+ ..||+|++|+++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999887764 389999999999975 579999999864
No 264
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=336.53 Aligned_cols=196 Identities=27% Similarity=0.329 Sum_probs=163.7
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--ccc-cccEEEEec
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDL-NKEIFYVPQ 520 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~~~-r~~i~~v~Q 520 (1099)
.|+++||++.|++++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ... ++.++|+||
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 58999999999756789999999999999999999999999999999999999999999999965 222 246999999
Q ss_pred CCCC---CcccHHHHhccCCCCC-C---cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 521 RPYT---AVGTLRDQLIYPLTSD-Q---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 521 ~p~l---~~~Ti~eni~~~~~~~-~---~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
+|.+ +..++.+|+.++.... . .......+++.++++.+++.++.++.+. +||||||||++|||||
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LSgG~~qrv~laraL 157 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG--------ELSGGQKKRVFLARAI 157 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc--------cCCHHHHHHHHHHHHH
Confidence 9864 3457889887542110 0 0011123457788999999988777663 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEE
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSL 647 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l 647 (1099)
+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|+|||+++.+ ..||+++++
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~ 215 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV 215 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999888764 489999999999876 568999776
No 265
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-34 Score=313.26 Aligned_cols=446 Identities=17% Similarity=0.158 Sum_probs=273.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWR 241 (1099)
Q Consensus 163 ~~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~-~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~ 241 (1099)
+.......+++. ...++|.++.+++..-|+.-+++ +...+..++++|+..++-.+. .+.....+++ ..+.+..
T Consensus 67 is~lg~t~~gq~----~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s-~lp~~~qa~i-l~l~s~a 140 (546)
T COG4615 67 ISQLGLTTLGQH----FIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFS-RLPELVQAII-LTLGSAA 140 (546)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHh-hhHHHHHHHH-HHHHHHH
Confidence 344455555655 44556777777887777776655 345788899999998652222 2222222221 1122223
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 001329 242 LCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALT 321 (1099)
Q Consensus 242 L~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~ 321 (1099)
...|.||++.+++.+.+.+..+.-.....+.-+..+...+.+.++......+.++.+..+. +++.++.- .++.+..-.
T Consensus 141 YLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l-~r~R~~~~-h~~~~~~~a 218 (546)
T COG4615 141 YLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTL-NRERAEYV-HNNLYIPDA 218 (546)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhhee-chHHHHHH-HhhhcCcch
Confidence 3446788877766554433333322333344444445555555555556666666666654 44433321 112221111
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 322 RHMRV-VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISS 400 (1099)
Q Consensus 322 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~ 400 (1099)
+..++ ....+.+......+.+..+...+++++++..- .++- .+- .+..+.. .+.-+-.|+.+.....
T Consensus 219 ~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~-~~w~----st~-~a~tivl------vlLflr~pL~s~vgil 286 (546)
T COG4615 219 QEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALS-LGWA----STN-VAATIVL------VLLFLRTPLLSAVGIL 286 (546)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc----hhh-HHHHHHH------HHHHHhhHHHHHHhhh
Confidence 11111 11111111111122222222233333221100 0111 011 1111111 1122224555555666
Q ss_pred HHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCC
Q 001329 401 RRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPN 480 (1099)
Q Consensus 401 ~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~s 480 (1099)
..+.++..++++|.++-..++....+. .+..++-..|+++||.|.|++...-+..||++|++||+|-|+|.|
T Consensus 287 P~l~~AqvA~~kiakle~~~~~a~~~~--------~q~~p~~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~N 358 (546)
T COG4615 287 PTLLTAQVAFNKIAKLELAPYKADFPR--------PQAFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGN 358 (546)
T ss_pred hHHHHHHHHHHHHHHhhcCCccccCCC--------CCcCCcccceeeeeeeeccCcccceecceeeEEecCcEEEEECCC
Confidence 778888999999988644222111110 011122356999999999987667789999999999999999999
Q ss_pred CCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHH
Q 001329 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1099)
Q Consensus 481 GsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~ 554 (1099)
||||||+++++.|++.|++|+|.+||.+ +++|+-++-||-|-++|+.++ -+ . ...+.+.+...
T Consensus 359 GsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll-----~~-e-----~~as~q~i~~~ 427 (546)
T COG4615 359 GSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GP-E-----GKASPQLIEKW 427 (546)
T ss_pred CCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh-----CC-c-----cCCChHHHHHH
Confidence 9999999999999999999999999964 467888888999988876433 11 1 11466777888
Q ss_pred HHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH----HHHhcCcEEEE
Q 001329 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA----KVRAMGTSCIT 630 (1099)
Q Consensus 555 l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~----~l~~~g~TvI~ 630 (1099)
++++.+.+...-..... ....||.|||+|+|+--|++-+-||+++||=-+--||.-++.+++ .++++|+||+.
T Consensus 428 LqrLel~~ktsl~d~~f---s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~a 504 (546)
T COG4615 428 LQRLELAHKTSLNDGRF---SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFA 504 (546)
T ss_pred HHHHHHhhhhcccCCcc---cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEE
Confidence 88877765432211100 013699999999999999999999999999999999999998765 46789999999
Q ss_pred EccChhHHHhcCEEEEEeCC
Q 001329 631 ISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 631 ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||||-....++||++.++++
T Consensus 505 IsHDd~YF~~ADrll~~~~G 524 (546)
T COG4615 505 ISHDDHYFIHADRLLEMRNG 524 (546)
T ss_pred EecCchhhhhHHHHHHHhcC
Confidence 99999999999999988865
No 266
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-36 Score=323.97 Aligned_cols=191 Identities=28% Similarity=0.362 Sum_probs=165.2
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc---cccccEEEEec
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIFYVPQ 520 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~---~~r~~i~~v~Q 520 (1099)
.++++||++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..+++++|++|
T Consensus 2 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 4789999999964 5799999999999999999999999999999999999999999999999651 25678999998
Q ss_pred CCCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 521 RPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 521 ~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
++.++ ..|++||+.+...... ..++++.++++.+|+.++.++.+ .+||||||||++||||++++|++
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPF--------GYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCCh--------hhcCHHHHHHHHHHHHHhcCCCE
Confidence 87664 5799999976432211 23456889999999988766655 38999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEe
Q 001329 600 AILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLD 648 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1099)
+||||||++||+.+..++.+.+++ .|.|+|++||+++.+.. |+++.++
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~ 199 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLG 199 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeec
Confidence 999999999999999999888764 48999999999999887 9998775
No 267
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-36 Score=336.46 Aligned_cols=197 Identities=24% Similarity=0.325 Sum_probs=166.8
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCC--------ccEEEeCCCC------cc
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV--------SGHIAKPGVG------SD 510 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~--------~G~I~i~g~~------~~ 510 (1099)
|+++|+++.|. ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+ ..
T Consensus 2 l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 78999999995 467999999999999999999999999999999999999998 9999999964 12
Q ss_pred ccccEEEEecCCC-CCcccHHHHhccCCCCCC----cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001329 511 LNKEIFYVPQRPY-TAVGTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1099)
Q Consensus 511 ~r~~i~~v~Q~p~-l~~~Ti~eni~~~~~~~~----~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1099)
+++.++|+||++. .+..|++||+.++..... .......+.+.++++.+++.++.++.+ .+|||||||
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~q 152 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV--------TTLSGGELA 152 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHH
Confidence 4567999999986 467899999987532110 011123356788999999998877765 489999999
Q ss_pred HHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 586 RLGMARLFY---------HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 586 RlaIARAL~---------~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|++|||||+ .+|+++||||||++||+.+...+.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999 59999999999999999999999887764 3899999999999885 79999999864
No 268
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4.2e-36 Score=330.56 Aligned_cols=185 Identities=31% Similarity=0.431 Sum_probs=162.7
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCC
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~ 523 (1099)
.++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..++|+||++.
T Consensus 4 ~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----~~~i~~v~q~~~ 77 (251)
T PRK09544 4 LVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----KLRIGYVPQKLY 77 (251)
T ss_pred EEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----ccCEEEeccccc
Confidence 689999999996 45799999999999999999999999999999999999999999999987 347999999987
Q ss_pred CCc---ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001329 524 TAV---GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1099)
Q Consensus 524 l~~---~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1099)
++. .|+.+++.+.. ...++++.++++.+++.++.++.+ .+||||||||++||||++.+|+++
T Consensus 78 ~~~~l~~~~~~~~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qrv~laral~~~p~ll 142 (251)
T PRK09544 78 LDTTLPLTVNRFLRLRP-------GTKKEDILPALKRVQAGHLIDAPM--------QKLSGGETQRVLLARALLNRPQLL 142 (251)
T ss_pred cccccChhHHHHHhccc-------cccHHHHHHHHHHcCChHHHhCCh--------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 654 48888875421 123567888999999998888766 389999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeC
Q 001329 601 ILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1099)
Q Consensus 601 iLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1099)
||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..+|+|++|++
T Consensus 143 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~ 196 (251)
T PRK09544 143 VLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH 196 (251)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC
Confidence 99999999999999998887754 289999999999987 46999999964
No 269
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-36 Score=325.18 Aligned_cols=191 Identities=25% Similarity=0.353 Sum_probs=161.7
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc----------ccccc
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKE 514 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~----------~~r~~ 514 (1099)
+++ ||++.|++ +.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.+- ..++.
T Consensus 2 ~~~-~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 2 LCV-DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred cee-eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 345 89999964 344 99999999 99999999999999999999999999999999998541 23568
Q ss_pred EEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 515 i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
++|+||++.++. .|+.||+.++.... .....++++.++++.+++.+..++.+ .+||||||||++||||+
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al 146 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYP--------AQLSGGEKQRVALARAL 146 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCc--------ccCCHHHHHHHHHHHHH
Confidence 999999998875 69999998753221 11123456788999999988777766 38999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 208 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDG 208 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999887754 3899999999999875 68999999864
No 270
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.4e-36 Score=326.66 Aligned_cols=196 Identities=24% Similarity=0.303 Sum_probs=161.2
Q ss_pred EEEEeeEEEcCC------CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeC--CC--C-c----
Q 001329 445 IEFSGVKVVTPT------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP--GV--G-S---- 509 (1099)
Q Consensus 445 I~~~~v~~~y~~------~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~--g~--~-~---- 509 (1099)
|+++|+++.|++ +.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. + .
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999953 1479999999999999999999999999999999999999999999998 42 2 0
Q ss_pred ----cc-cccEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcChH
Q 001329 510 ----DL-NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLG 582 (1099)
Q Consensus 510 ----~~-r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~p~~~~~~~g~~LSGG 582 (1099)
+. ++.++|+||++.++. .|+.||+.++............+++.++++.+++.+. .++.+ .+||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G 153 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPP--------ATFSGG 153 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCc--------ccCCHH
Confidence 11 357999999997765 5999999864321111111224567788999999764 34444 489999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEe
Q 001329 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLD 648 (1099)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~ 648 (1099)
||||++|||||+.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .||+++.+.
T Consensus 154 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 154 EQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 99999999999999999999999999999999999888765 4899999999999885 799998763
No 271
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=346.87 Aligned_cols=188 Identities=23% Similarity=0.318 Sum_probs=164.1
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c---------ccccc
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S---------DLNKE 514 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~---------~~r~~ 514 (1099)
|++ ||++.|.+ + .+ |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . ..+++
T Consensus 2 l~~-~l~k~~~~-~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGD-L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCC-E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 667 89999953 3 23 9999999999999999999999999999999999999999999854 1 23578
Q ss_pred EEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 515 i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
++|+||++.++. .|++||+.++... ...+++.++++.+++.++.++.|. +||||||||++|||||
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~~--------~LSgGq~qRvalaraL 143 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAK------SMVAQFDKIVALLGIEPLLDRYPG--------SLSGGEKQRVAIGRAL 143 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhh------hhHHHHHHHHHHcCCchhhhCCcc--------cCCHHHHHHHHHHHHH
Confidence 999999998875 6999999986431 245678899999999998888874 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+.+|+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+. .||++++|+++
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G 205 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQG 205 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999998887754 3899999999998764 69999999864
No 272
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-36 Score=330.29 Aligned_cols=202 Identities=23% Similarity=0.258 Sum_probs=164.6
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-----CCccEEEeCCCC-c-------c
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-S-------D 510 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-~-------~ 510 (1099)
.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+ . .
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 478999999996 4679999999999999999999999999999999999864 489999999964 1 2
Q ss_pred ccccEEEEecCCCCCcccHHHHhccCCCCCCcC-CcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001329 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1099)
Q Consensus 511 ~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1099)
+++.++|+||+|.++..|+.||+.++....... .....+++.++++.+++.+.+....+ ....+||||||||++|
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~----~~~~~LS~Gq~qrv~l 157 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLD----KSALGLSGGQQQRLCI 157 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHh----CCcccCCHHHHHHHHH
Confidence 467899999999988889999998753221111 11223567788999998654322110 1135899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 590 ARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||||+.+|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.+. .+|++++++++
T Consensus 158 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G 221 (250)
T PRK14266 158 ARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNG 221 (250)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECC
Confidence 9999999999999999999999999999888765 4789999999999775 57999999764
No 273
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.8e-36 Score=320.30 Aligned_cols=187 Identities=26% Similarity=0.352 Sum_probs=158.6
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEEe
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v~ 519 (1099)
++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 47899999985 4679999999999999999999999999999999999999999999999964 22456899999
Q ss_pred cCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|++.++. .|+.||+.+...... ..++++.++++.+++.++.++.+ .+||||||||++||||++.+|+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPA--------AQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 9988765 699999986532211 12346788999999998887766 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEE
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVL 645 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il 645 (1099)
++||||||++||+.++..+.+.+++ .|.|+|++||+...+.. ++.+
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 9999999999999999999888764 48999999999864433 4443
No 274
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8e-37 Score=303.20 Aligned_cols=186 Identities=27% Similarity=0.404 Sum_probs=162.1
Q ss_pred CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccH
Q 001329 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTL 529 (1099)
Q Consensus 456 ~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti 529 (1099)
++.++|+++||++++||.++|+||||||||||+|.++-|.+|++|++.+.|.+ +.+|.+|+||.|.|.+|.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 45789999999999999999999999999999999999999999999999976 467999999999999999999
Q ss_pred HHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 001329 530 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609 (1099)
Q Consensus 530 ~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaL 609 (1099)
.||+.||-..+.. ..+.....+.++++++.+.+-..+ ..+||||||||+||+|-|.--|+||+||||||||
T Consensus 94 eDNlifP~~~r~r--r~dr~aa~~llar~~l~~~~L~k~-------it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 94 EDNLIFPWQIRNR--RPDRAAALDLLARFALPDSILTKN-------ITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hhccccchHHhcc--CCChHHHHHHHHHcCCchhhhcch-------hhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9999998654321 235667888999999976432222 2489999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH----HhcCcEEEEEccChhH-HHhcCEEEEEeCC
Q 001329 610 TTDMEERFCAKV----RAMGTSCITISHRPAL-VAFHDVVLSLDGE 650 (1099)
Q Consensus 610 D~~~~~~l~~~l----~~~g~TvI~ItH~l~~-i~~~D~Il~l~~~ 650 (1099)
|+.+.+.+.+.+ ++++..+++||||.+. ++++|+++-+..+
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G 210 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPG 210 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccC
Confidence 999988876654 5679999999999987 7899999988764
No 275
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.7e-35 Score=328.90 Aligned_cols=192 Identities=25% Similarity=0.389 Sum_probs=164.8
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecC
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~ 521 (1099)
.+.|+++|+++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|+
T Consensus 37 ~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------~i~yv~q~ 106 (282)
T cd03291 37 DNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------RISFSSQF 106 (282)
T ss_pred CCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------EEEEEeCc
Confidence 467999999985 35799999999999999999999999999999999999999999999988 59999999
Q ss_pred CCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCC
Q 001329 522 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 522 p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
++++..|++||+.++... ...++.++++.+++.+.++..|..... ..+.+||||||||++|||||+.+|+
T Consensus 107 ~~l~~~tv~enl~~~~~~-------~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 107 SWIMPGTIKENIIFGVSY-------DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred ccccccCHHHHhhccccc-------CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999889999999875321 223456677888888887776643221 2346899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-Hh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKV-RA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l-~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
++||||||++||+.++..+.+.+ ++ .+.|+|++||+++.+..||++++|+++
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G 234 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECC
Confidence 99999999999999999887643 32 488999999999999899999999864
No 276
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-36 Score=311.24 Aligned_cols=161 Identities=30% Similarity=0.465 Sum_probs=145.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEEe
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v~ 519 (1099)
++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.++|+|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 468999999864 579999999999999999999999999999999999999999999999964 23467899999
Q ss_pred cCCCCCcc-cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|++.++.+ |+.||+. ||||||||++|||||+.+|+
T Consensus 80 q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 80 EEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred cCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99987764 8888863 89999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++||||||++||+.+...+.+.+++ .|.|+|++||+.+.+. .+|++++|+++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g 171 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNG 171 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999888764 3789999999999887 68999999864
No 277
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=5.2e-36 Score=345.42 Aligned_cols=189 Identities=22% Similarity=0.288 Sum_probs=162.3
Q ss_pred eeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc----------cccccEEEE
Q 001329 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEIFYV 518 (1099)
Q Consensus 449 ~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~----------~~r~~i~~v 518 (1099)
|+++.|++ .. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- ..++.++|+
T Consensus 4 ~l~~~~~~-~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGD-FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC-EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 78888853 33 4 99999999999999999999999999999999999999999999541 235689999
Q ss_pred ecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001329 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1099)
Q Consensus 519 ~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1099)
||++.++. .|++||+.++..... .....+++.++++.+++.++.++.|. +||||||||++|||||+.+|
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~--~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LSgGqkqRvalAraL~~~p 150 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRAR--PSERRISFERVIELLGIGHLLGRLPG--------RLSGGEKQRVAIGRALLSSP 150 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccC--hhHHHHHHHHHHHHcCChhHhcCChh--------hCCHHHHHHHHHHHHHHcCC
Confidence 99998876 599999998643211 11224468889999999998888774 89999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 598 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 598 ~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+. .+|++++|+++
T Consensus 151 ~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G 208 (354)
T TIGR02142 151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDG 208 (354)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999998887754 3899999999999875 69999999875
No 278
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.4e-36 Score=366.33 Aligned_cols=199 Identities=27% Similarity=0.352 Sum_probs=165.9
Q ss_pred CcEEEEeeEEEcCC----------CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c--
Q 001329 443 NYIEFSGVKVVTPT----------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-- 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~----------~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-- 509 (1099)
..|+++|+++.|+. ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.+ .
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 46999999999952 3579999999999999999999999999999999999995 89999999954 1
Q ss_pred ------cccccEEEEecCCC--CC-cccHHHHhccCCCCCC--cCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCC
Q 001329 510 ------DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQ--EVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGD 577 (1099)
Q Consensus 510 ------~~r~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~~--~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~ 577 (1099)
.++++++||||++. ++ ..|+.||+.++..... ......++++.++++.+++. +..++.|.
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 424 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPA-------- 424 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCc--------
Confidence 13567999999983 44 4699999987532110 01111235678899999997 56777664
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+++ .|+|+|+||||++.+. .||+|++|+++
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 8999999999999999999999999999999999999999888763 3899999999999875 69999999864
No 279
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.1e-36 Score=328.79 Aligned_cols=186 Identities=25% Similarity=0.304 Sum_probs=154.7
Q ss_pred CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEEe-cCCCCC-cccH
Q 001329 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP-QRPYTA-VGTL 529 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v~-Q~p~l~-~~Ti 529 (1099)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|++ |++.++ ..|+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 4579999999999999999999999999999999999999999999999864 23456899998 556554 5799
Q ss_pred HHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 001329 530 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609 (1099)
Q Consensus 530 ~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaL 609 (1099)
+||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|+++||||||++|
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 184 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPV--------RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 999976432111111112345677889999987777655 379999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 610 TTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 610 D~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|+.+.+.+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 185 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 230 (236)
T cd03267 185 DVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKG 230 (236)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 99999999988764 2789999999999875 68999999864
No 280
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-36 Score=337.12 Aligned_cols=199 Identities=21% Similarity=0.284 Sum_probs=164.4
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-----CCccEEEeCCCC--------
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1099)
...|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 43 ~~~l~i~nl~~~~~~-~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 43 DAKLSVEDLDVYYGD-DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred CceEEEEEEEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 346999999999964 679999999999999999999999999999999999986 689999999854
Q ss_pred ccccccEEEEecCCCCCcccHHHHhccCCCCCC------------cC-CcCCHHHHHHHHHhcCChh----HHhcCCCCc
Q 001329 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ------------EV-EPLTHGGMVELLKNVDLEY----LLDRYPPEK 571 (1099)
Q Consensus 509 ~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~------------~~-~~~~~~~i~~~l~~~~l~~----~~~~~p~~~ 571 (1099)
..+++.++|+||++.++..|++||+.++..... .. ....++++.++++.+++.+ ..++.+
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 198 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNA--- 198 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcc---
Confidence 124568999999998888899999987532110 00 0112456788899998853 333333
Q ss_pred ccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEE-EE
Q 001329 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVL-SL 647 (1099)
Q Consensus 572 ~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il-~l 647 (1099)
.+||||||||++|||||+++|++|||||||++||+.++..+.+.+++. +.|+|++||+++.+. .+|+++ +|
T Consensus 199 -----~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 199 -----LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 489999999999999999999999999999999999999999988753 689999999999875 689975 55
Q ss_pred eC
Q 001329 648 DG 649 (1099)
Q Consensus 648 ~~ 649 (1099)
++
T Consensus 274 ~~ 275 (305)
T PRK14264 274 TG 275 (305)
T ss_pred cC
Confidence 65
No 281
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-36 Score=309.71 Aligned_cols=161 Identities=38% Similarity=0.637 Sum_probs=145.8
Q ss_pred EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 445 I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
++++|+++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4689999999653 379999999999999999999999999999999999999999999999964 134568999
Q ss_pred EecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001329 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1099)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1099)
+||++.++..|+.||+ ||||||||++||||++.+|
T Consensus 81 ~~~~~~~~~~t~~e~l---------------------------------------------LS~G~~~rl~la~al~~~p 115 (171)
T cd03228 81 VPQDPFLFSGTIRENI---------------------------------------------LSGGQRQRIAIARALLRDP 115 (171)
T ss_pred EcCCchhccchHHHHh---------------------------------------------hCHHHHHHHHHHHHHhcCC
Confidence 9999988878888876 8999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 598 KFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 598 ~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+++||||||++||+.+...+.+.+++ .++|+|++||+++.+..||++++|+++
T Consensus 116 ~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g 170 (171)
T cd03228 116 PILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170 (171)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCC
Confidence 99999999999999999999888865 378999999999998889999999764
No 282
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5.3e-36 Score=325.66 Aligned_cols=182 Identities=21% Similarity=0.289 Sum_probs=152.9
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-ccccccEEEEecCCCCCc-ccHHHHhccCCC
Q 001329 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPYTAV-GTLRDQLIYPLT 538 (1099)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~~r~~i~~v~Q~p~l~~-~Ti~eni~~~~~ 538 (1099)
++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .......+|+||++.++. .|+.||+.++..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999965 222234689999998876 699999987521
Q ss_pred C--CCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001329 539 S--DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1099)
Q Consensus 539 ~--~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~ 616 (1099)
. .........+++.++++.+++.+..++.+ .+||||||||++|||||+.+|+++||||||++||+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 152 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRP--------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence 1 01111122345788999999998887766 3899999999999999999999999999999999999999
Q ss_pred HHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 617 FCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 617 l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+.+.+++ .|+|+|+|||+++.+. .+|++++|+++
T Consensus 153 l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G 191 (230)
T TIGR01184 153 LQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191 (230)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 9887754 3899999999999865 69999999864
No 283
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-35 Score=310.66 Aligned_cols=163 Identities=29% Similarity=0.375 Sum_probs=145.9
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c-------cccccEE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-------DLNKEIF 516 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-------~~r~~i~ 516 (1099)
|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++
T Consensus 1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 47899999995 4679999999999999999999999999999999999999999999999954 1 2357899
Q ss_pred EEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
|++|+|.++. .|++||+.+. ||||||||++|||||+.
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHC
Confidence 9999998775 5999987642 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|+++||||||++||+.++..+.+.+++ . |+|+|++||+++.+. .+|++++|+++
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 177 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 9999999999999999999999887764 3 799999999999887 68999999763
No 284
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9.4e-36 Score=358.89 Aligned_cols=198 Identities=25% Similarity=0.346 Sum_probs=168.1
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc------c-ccccEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~------~-~r~~i~ 516 (1099)
.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- . .++.++
T Consensus 4 ~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 4 LLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 689999999995 46799999999999999999999999999999999999999999999999641 1 246799
Q ss_pred EEecCCCCCc-ccHHHHhccCCCCCC---cC-CcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001329 517 YVPQRPYTAV-GTLRDQLIYPLTSDQ---EV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1099)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~---~~-~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1099)
|+||++.++. .|++||+.++..... .. .....+++.++++.+++.+..++.+. +||||||||++|||
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~la~ 154 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG--------ELSIGEQQMVEIAK 154 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh--------hCCHHHHHHHHHHH
Confidence 9999987665 599999988643211 00 11123467889999999887777663 89999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 592 AL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||+.+|++|||||||++||+.+...+.+.+++ .|.|+|+||||++.+. .||+|++|+++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G 217 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDG 217 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999877654 4899999999999875 68999999864
No 285
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.3e-35 Score=359.82 Aligned_cols=200 Identities=26% Similarity=0.371 Sum_probs=165.2
Q ss_pred CcEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-----CccEEEeCCCC-c----
Q 001329 443 NYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-S---- 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~---~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-~---- 509 (1099)
+.++++||++.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+ .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 36999999999964 25799999999999999999999999999999999999987 79999999964 1
Q ss_pred ----ccc-ccEEEEecCCC--CC-cccHHHHhccCCCC-CCcCCcCCHHHHHHHHHhcCChh---HHhcCCCCcccCCCC
Q 001329 510 ----DLN-KEIFYVPQRPY--TA-VGTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGD 577 (1099)
Q Consensus 510 ----~~r-~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~-~~~~~~~~~~~i~~~l~~~~l~~---~~~~~p~~~~~~~g~ 577 (1099)
..+ ++++||||+|. ++ ..|+.+|+.++... .........+++.++++.+|+.+ ..++.| .
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~--------~ 155 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP--------H 155 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC--------c
Confidence 122 57999999985 33 36899998753211 01111123467888999999975 356666 3
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+++ .|.|+|+||||++.+. .||+|++|+++
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G 233 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECC
Confidence 8999999999999999999999999999999999999999888765 3899999999999875 68999999864
No 286
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=309.78 Aligned_cols=198 Identities=22% Similarity=0.272 Sum_probs=170.6
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i~ 516 (1099)
.+..+|+.++|. ++++++||||+|++||+||+.||||+||||.+.++.|+.+|++|+|.+||.| ..-|..||
T Consensus 4 ~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 578899999994 6789999999999999999999999999999999999999999999999987 23356799
Q ss_pred EEecCCCCCcc-cHHHHhccCCCCCCcCCc--CCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 517 YVPQRPYTAVG-TLRDQLIYPLTSDQEVEP--LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 517 ~v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~--~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
|+||+|.+|.+ ||.|||............ ...+++.++|+.+++.+..++.. .+||||||+|+.|||||
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a--------~sLSGGERRR~EIARaL 154 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKA--------YSLSGGERRRVEIARAL 154 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcc--------cccccchHHHHHHHHHH
Confidence 99999999975 999999876554332222 34456778999999998877643 58999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHH---HHhcCcEEEEEccChh-HHHhcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAK---VRAMGTSCITISHRPA-LVAFHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~---l~~~g~TvI~ItH~l~-~i~~~D~Il~l~~~ 650 (1099)
+.+|++++||||++|+||.+...++++ |++.|..|++.-|+.. ++..|||.+++..+
T Consensus 155 a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G 215 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDG 215 (243)
T ss_pred hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecC
Confidence 999999999999999999988887765 4567999999999874 77899999999864
No 287
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=358.49 Aligned_cols=199 Identities=24% Similarity=0.311 Sum_probs=168.7
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC--CccEEEeCCCCc-------cccc
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVGS-------DLNK 513 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p--~~G~I~i~g~~~-------~~r~ 513 (1099)
..|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+- ..++
T Consensus 4 ~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 3699999999995 46799999999999999999999999999999999999996 899999999641 1246
Q ss_pred cEEEEecCCCCCc-ccHHHHhccCCCCC--Cc-CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001329 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSD--QE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1099)
Q Consensus 514 ~i~~v~Q~p~l~~-~Ti~eni~~~~~~~--~~-~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1099)
.++||||++.++. .|++||+.++.... .. ......+++.++++.+++.+..++.+ .+||||||||++|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGqkqrv~l 154 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV--------GNLGLGQQQLVEI 154 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch--------hhCCHHHHHHHHH
Confidence 7999999997765 59999998875321 10 11112356788999999987777766 3899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 590 ARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G 219 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDG 219 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999887754 4899999999999875 68999999864
No 288
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-35 Score=313.21 Aligned_cols=185 Identities=20% Similarity=0.260 Sum_probs=158.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-ccc-cccEEEEecCC
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDL-NKEIFYVPQRP 522 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~~-r~~i~~v~Q~p 522 (1099)
++++|+++.|++ +.++ ++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ... ++.++|++|++
T Consensus 2 l~~~~l~~~~~~-~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 2 LSLHQLQFNIEQ-KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred eEEEEeeEEECC-cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 789999999953 4555 5999999999999999999999999999999999999999999965 111 34699999987
Q ss_pred CC-CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001329 523 YT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1099)
Q Consensus 523 ~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1099)
.+ +..|++||+.+..... ...+++.++++.+++.+..++.+ .+||||||||++||||++++|+++|
T Consensus 80 ~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIY-----NSAETLYAAIHYFKLHDLLDEKC--------YSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CCCccCCHHHHHHHHHHhc-----ccHHHHHHHHHHcCCHhhhccCh--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 54 5689999998754221 13456778899999988777655 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHHhcCEE
Q 001329 602 LDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAFHDVV 644 (1099)
Q Consensus 602 LDEpTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~~~D~I 644 (1099)
|||||++||+.+++.+.+.++ +.|.|+|++||+++.++.+|.+
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 999999999999999988775 3589999999999999888765
No 289
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=357.29 Aligned_cols=199 Identities=21% Similarity=0.305 Sum_probs=168.8
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc-------cccccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-------~~r~~i 515 (1099)
+.|+++||++.|+ ++++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- .+++++
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 3689999999995 46799999999999999999999999999999999999999999999998641 235789
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCC--Cc-CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSD--QE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~--~~-~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1099)
+||||++.++. .|+.||+.++.... .. ......+++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lar 153 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL--------KYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch--------hhCCHHHHHHHHHHH
Confidence 99999998765 59999999864211 10 01122356788999999976666655 389999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 592 AL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|+|||+++.+. .||+|++|+++
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G 216 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDG 216 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999887764 4899999999999875 68999999864
No 290
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.1e-35 Score=309.67 Aligned_cols=162 Identities=27% Similarity=0.381 Sum_probs=144.0
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c------cccccEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~~r~~i~ 516 (1099)
.++++|+++.| +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++
T Consensus 4 ~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 4 VLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred EEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 68999999987 8999999999999999999999999999999999999999999999964 1 2356899
Q ss_pred EEecCC----CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001329 517 YVPQRP----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1099)
Q Consensus 517 ~v~Q~p----~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1099)
|+||++ ..+..|++||+.++.. ||||||||++||||
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHH
Confidence 999995 2345799999876310 89999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 593 L~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G 180 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEG 180 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCC
Confidence 9999999999999999999999999888764 3899999999998775 59999999864
No 291
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=357.09 Aligned_cols=199 Identities=24% Similarity=0.246 Sum_probs=168.4
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c------cccccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~~r~~i 515 (1099)
..|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . ..++.+
T Consensus 4 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 4 PYISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred ceEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 3689999999995 4679999999999999999999999999999999999999999999999864 1 123579
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCC----Cc---CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHH
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSD----QE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~----~~---~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1099)
+||||++.++. .|++||+.++.... .. ......+++.++++.+|+.+..++.+ .+||||||||+
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgG~~qrv 154 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV--------ANLSISHKQML 154 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch--------hhCCHHHHHHH
Confidence 99999987765 59999998754211 10 00112356788999999987777766 38999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 588 aIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|+|||+++.+. .||++++|+++
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G 221 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999887754 4899999999999885 68999999864
No 292
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.1e-35 Score=354.96 Aligned_cols=195 Identities=22% Similarity=0.372 Sum_probs=169.1
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c-----c-ccccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D-LNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~-~r~~i 515 (1099)
+.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . . .+..+
T Consensus 10 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 10 PLLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred ceEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 4699999999995 4679999999999999999999999999999999999999999999999854 1 1 13469
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
+|+||++.++. .|+.||+.++.... ....+++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKR----QASMQKMKQLLAALGCQLDLDSSA--------GSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccc----hHHHHHHHHHHHHcCCCccccCCh--------hhCCHHHHHHHHHHHHHH
Confidence 99999998765 59999999864321 123467888999999987777766 389999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
.+|++|||||||++||+.+..++.+.+++ .|+|+|++||+++.+. .||+|++|+++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G 216 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDG 216 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999887764 4899999999999875 69999999864
No 293
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-35 Score=311.70 Aligned_cols=171 Identities=25% Similarity=0.398 Sum_probs=149.2
Q ss_pred cEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcC--cCCccEEEeCCCC--ccccccEE
Q 001329 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVG--SDLNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~---~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~--~p~~G~I~i~g~~--~~~r~~i~ 516 (1099)
.|+++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.+ ..+++.++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 5899999999975 257999999999999999999999999999999999986 4899999999965 34567899
Q ss_pred EEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
|++|++.++. .|++||+.++.. ++ +||||||||++||||++.
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~----------------~~---------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL----------------LR---------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH----------------Hh---------------------cCCHHHhHHHHHHHHHhc
Confidence 9999998766 599999976310 00 599999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhH--HHhcCEEEEEeCCC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGEG 651 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~--i~~~D~Il~l~~~g 651 (1099)
+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++. ...+|++++|+++|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g 186 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGG 186 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence 9999999999999999999999887764 48999999999983 56799999998644
No 294
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=5.7e-35 Score=321.50 Aligned_cols=200 Identities=26% Similarity=0.349 Sum_probs=163.3
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCc--CcCCccEEEeCCCC-c-----cccc-
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-S-----DLNK- 513 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl--~~p~~G~I~i~g~~-~-----~~r~- 513 (1099)
..++++||++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.+ . ..++
T Consensus 6 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 6 PILEIKNLHASVN-ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred ceEEEEeEEEEeC-CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 3699999999996 45799999999999999999999999999999999998 68999999999864 1 1222
Q ss_pred cEEEEecCCCCCc-ccHHHHhccCCCCCC---cCCcC----CHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001329 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSDQ---EVEPL----THGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 514 ~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~---~~~~~----~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
.++|++|++.++. .|+.+|+.+...... ..... ..+++.++++.+++. +..++.+. .+||||||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------~~LSgG~~ 157 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN-------EGFSGGEK 157 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc-------cCCCHHHH
Confidence 4889999998776 488999875422110 00001 124567889999997 45666552 25999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh--cCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF--HDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~--~D~Il~l~~~ 650 (1099)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+.. +|++++|+++
T Consensus 158 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G 228 (252)
T CHL00131 158 KRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNG 228 (252)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCC
Confidence 999999999999999999999999999999999888764 48999999999998864 7999999864
No 295
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.6e-35 Score=312.11 Aligned_cols=170 Identities=31% Similarity=0.457 Sum_probs=149.3
Q ss_pred cEEEEeeEEEcCC-----CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcC--cCCccEEEeCCCC---ccccc
Q 001329 444 YIEFSGVKVVTPT-----GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVG---SDLNK 513 (1099)
Q Consensus 444 ~I~~~~v~~~y~~-----~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~--~p~~G~I~i~g~~---~~~r~ 513 (1099)
.|+++||++.|++ ++++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.+ ...++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 4899999999975 368999999999999999999999999999999999999 9999999999975 24567
Q ss_pred cEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001329 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1099)
Q Consensus 514 ~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1099)
.++|+||++.++. .|++||+.++.. +. +||||||||++||||
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~----------------~~---------------------~LS~G~~qrv~lara 125 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAK----------------LR---------------------GLSGGERKRVSIALE 125 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHH----------------hc---------------------cCCHHHHHHHHHHHH
Confidence 8999999998775 599999865310 00 599999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChh-HH-HhcCEEEEEeCC
Q 001329 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPA-LV-AFHDVVLSLDGE 650 (1099)
Q Consensus 593 L~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~-~i-~~~D~Il~l~~~ 650 (1099)
|+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++ .+ ..+|++++|+++
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCC
Confidence 9999999999999999999999999887764 4899999999996 44 568999999864
No 296
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=314.10 Aligned_cols=199 Identities=27% Similarity=0.369 Sum_probs=170.3
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i 515 (1099)
..++++|++++| ++-.+++||||++++||+++|+|||||||||++++|.|+|+|++|+|.++|.+ .-.|..|
T Consensus 3 ~lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 3 PLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred ceeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 357899999999 56789999999999999999999999999999999999999999999999976 1125678
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCC------------CcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChH
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSD------------QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~------------~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGG 582 (1099)
+--||.+-+|. .|+.||+..+.... ...+.+..+++.++|+.+||.+..++.- .+||+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A--------~~LsyG 153 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA--------GNLSYG 153 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh--------hcCChh
Confidence 89999998875 69999998763311 0012234567888999999999888754 489999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||+|+.|||||+.+|++|+||||.+||.+....++.+.+++ .|.|+++|.||+..+. .||||+||+.+
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G 226 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYG 226 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCC
Confidence 99999999999999999999999999999998888877654 4699999999999875 79999999864
No 297
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.4e-35 Score=308.59 Aligned_cols=163 Identities=34% Similarity=0.486 Sum_probs=141.9
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc------cccccEEEEe
Q 001329 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIFYVP 519 (1099)
Q Consensus 446 ~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~------~~r~~i~~v~ 519 (1099)
+++||++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- .+++.++|+|
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 47899999964 6799999999999999999999999999999999999999999999998541 1233456666
Q ss_pred cCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 520 QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 520 Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
| +++.+++.++.++.+ .+||||||||++||||++.+|++
T Consensus 80 q---------------------------------~l~~~gl~~~~~~~~--------~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 80 Q---------------------------------ALELLGLAHLADRPF--------NELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred H---------------------------------HHHHcCCHhHhcCCc--------ccCCHHHHHHHHHHHHHhcCCCE
Confidence 5 677888887777655 38999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 600 AILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+||||||++||+.+.+.+.+.+++ . +.|+|++||+++.+ ..+|++++++++
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g 174 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDG 174 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999887754 3 78999999999987 579999999864
No 298
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-35 Score=301.38 Aligned_cols=198 Identities=27% Similarity=0.350 Sum_probs=168.4
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
+|+.+|++++- .++.+++++||++++||.++|+||||+|||||+|+|+|...|++|++.++|.+ .++.++-++
T Consensus 1 mi~a~nls~~~-~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSL-AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEe-ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 47889999876 46789999999999999999999999999999999999999999999999986 244567899
Q ss_pred EecCCCC-CcccHHHHhccCCCCCCcCCc-CCHH-HHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 518 VPQRPYT-AVGTLRDQLIYPLTSDQEVEP-LTHG-GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 518 v~Q~p~l-~~~Ti~eni~~~~~~~~~~~~-~~~~-~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
+||+..+ |.-|+.|.+.+|...+....+ ..++ -+.+++..+++..+..+.- .+|||||||||.+||.|+
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y--------~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY--------RTLSGGEQQRVQLARVLA 151 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch--------hhcCchHHHHHHHHHHHH
Confidence 9999865 678999999998765533222 1222 3677999999999988754 279999999999999997
Q ss_pred c------CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 595 H------KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 595 ~------~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+ +|++|+||||||+||..-+..++++.++ .|..|+.|-||+++.. +||+|++|+++
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~G 217 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQG 217 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCC
Confidence 5 4569999999999999999998887765 4899999999999875 79999999875
No 299
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.1e-34 Score=318.41 Aligned_cols=198 Identities=27% Similarity=0.348 Sum_probs=154.4
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcC--cCCccEEEeCCCCc------cc-cccE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVGS------DL-NKEI 515 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~--~p~~G~I~i~g~~~------~~-r~~i 515 (1099)
|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|.+- .. +..+
T Consensus 2 i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 78999999996 457999999999999999999999999999999999994 69999999999651 12 3569
Q ss_pred EEEecCCCCCcc-cHHHHhccCCCC---CCcCCcC----CHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHH
Q 001329 516 FYVPQRPYTAVG-TLRDQLIYPLTS---DQEVEPL----THGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1099)
Q Consensus 516 ~~v~Q~p~l~~~-Ti~eni~~~~~~---~~~~~~~----~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1099)
+|++|++.++.. |..+++...... ....... ..+.+.+.++.+++. ++.++.+ ..+||||||||
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-------~~~LS~G~~qr 153 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV-------NVGFSGGEKKR 153 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC-------CCCCCHHHHHH
Confidence 999999876543 444443221100 0000001 123456678888884 3333332 13699999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh--cCEEEEEeCC
Q 001329 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF--HDVVLSLDGE 650 (1099)
Q Consensus 587 laIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~--~D~Il~l~~~ 650 (1099)
++||||++++|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+.. +|+|++|+++
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g 222 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQG 222 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECC
Confidence 9999999999999999999999999999999887653 48999999999998875 7999999764
No 300
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4.9e-35 Score=316.91 Aligned_cols=191 Identities=22% Similarity=0.297 Sum_probs=155.2
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCC-C
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP-Y 523 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p-~ 523 (1099)
+.++++++.|. ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ....+.. +
T Consensus 23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~------~~~~~~~~~ 95 (224)
T cd03220 23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS------SLLGLGGGF 95 (224)
T ss_pred hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc------hhhcccccC
Confidence 67888888774 46799999999999999999999999999999999999999999999998531 1111122 2
Q ss_pred CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEe
Q 001329 524 TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILD 603 (1099)
Q Consensus 524 l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLD 603 (1099)
.+..|++||+.++............+++.++++.+++.+..++.+ .+||||||||++||||++++|+++|||
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 96 NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPV--------KTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 345799999987532111111112345778889999988777765 389999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 604 ECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 604 EpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||++||+.++..+.+.+++ .|.|+|++||+++.+. .+|++++++++
T Consensus 168 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 218 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKG 218 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999998887754 3789999999999875 69999999864
No 301
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=304.31 Aligned_cols=198 Identities=22% Similarity=0.310 Sum_probs=161.0
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i 515 (1099)
..++++||+..|. ..++|+||||++++||+++|+|+||+|||||+|+|+|+.+|.+|+|.++|.| ...|..|
T Consensus 2 ~mL~v~~l~~~YG-~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYG-KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeeccc-ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 3689999999984 4789999999999999999999999999999999999999999999999986 2346789
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcC-ChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~-l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
+||||.-.+|. .||.||+..+...... +......+.++.+.+- |.+..+ ..+.+|||||||.+||||||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~--------~~aG~LSGGEQQMLAiaRAL 151 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRN--------QRAGTLSGGEQQMLAIARAL 151 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhc--------CcccCCChHHHHHHHHHHHH
Confidence 99999988775 6999999976433211 0111112444444432 222222 23568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+.+|++|+|||||.+|-|...++|.+.+++ .|.||++|.++...+ +.+|+.++|+++
T Consensus 152 m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~G 213 (237)
T COG0410 152 MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENG 213 (237)
T ss_pred hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCC
Confidence 999999999999999999999998877653 378999999999876 578999999874
No 302
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-35 Score=310.12 Aligned_cols=176 Identities=22% Similarity=0.317 Sum_probs=147.5
Q ss_pred cEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc---CCccEEEeCCCC-----cccc
Q 001329 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG-----SDLN 512 (1099)
Q Consensus 444 ~I~~~~v~~~y~~---~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~---p~~G~I~i~g~~-----~~~r 512 (1099)
.+.++||+|.|+. ++++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 4789999999974 4579999999999999999999999999999999999999 899999999965 1346
Q ss_pred ccEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001329 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1099)
Q Consensus 513 ~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1099)
+.++|+||++.++. .|++||+.++... . .++.+ .+||||||||++|||
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------------~-------~~~~~--------~~LS~Ge~qrl~lar 131 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRC----------------K-------GNEFV--------RGISGGERKRVSIAE 131 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhh----------------c-------cccch--------hhCCHHHHHHHHHHH
Confidence 78999999997775 5999999864210 0 12222 479999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEE-ccChhHH-HhcCEEEEEeCC
Q 001329 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITI-SHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 592 AL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~-g~TvI~I-tH~l~~i-~~~D~Il~l~~~ 650 (1099)
||+++|+++||||||++||+.+++.+.+.+++ . +.|+|++ +|+.+.+ +.+|++++|+++
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G 196 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECC
Confidence 99999999999999999999999999887764 2 5676665 4555554 679999999874
No 303
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=5.1e-35 Score=317.85 Aligned_cols=183 Identities=31% Similarity=0.393 Sum_probs=151.1
Q ss_pred eeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC----CccEEEeCCCC---ccc-cccEEEEecCCC--CC-ccc
Q 001329 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL----VSGHIAKPGVG---SDL-NKEIFYVPQRPY--TA-VGT 528 (1099)
Q Consensus 460 vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p----~~G~I~i~g~~---~~~-r~~i~~v~Q~p~--l~-~~T 528 (1099)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ .+. ++.++|++|++. ++ ..|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57999999999999999999999999999999999999 89999999965 122 357999999984 33 359
Q ss_pred HHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh---hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCC
Q 001329 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE---YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605 (1099)
Q Consensus 529 i~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~---~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEp 605 (1099)
+.+|+.++............+++.++++.+++. +..++.+ .+||||||||++||||++.+|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYP--------FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCCh--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999886543211111112345688899999997 4555544 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 606 TSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 606 TSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|++||+.++..+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 202 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDG 202 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999998887754 3889999999999885 69999999864
No 304
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-35 Score=351.89 Aligned_cols=195 Identities=24% Similarity=0.296 Sum_probs=163.8
Q ss_pred EEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccEEEEe
Q 001329 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIFYVP 519 (1099)
Q Consensus 447 ~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i~~v~ 519 (1099)
++|+++.|+ ++++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..+++.++|+|
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 368899885 4679999999999999999999999999999999999999999999999964 12356799999
Q ss_pred cCCCCC-cccHHHHhccCCCCC-Cc--CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 520 QRPYTA-VGTLRDQLIYPLTSD-QE--VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 520 Q~p~l~-~~Ti~eni~~~~~~~-~~--~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
|++.++ ..|+.||+.++.... .. ......+++.++++.+++.+..++.+ .+|||||||||+|||||+.
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV--------ATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch--------hhCCHHHHHHHHHHHHHHh
Confidence 998765 469999998764211 10 01112346778899999987666655 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|++|||||||++||+.+..++.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G 210 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDG 210 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999887754 5899999999999875 68999999864
No 305
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=8.1e-35 Score=352.35 Aligned_cols=197 Identities=26% Similarity=0.316 Sum_probs=164.1
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcC--cCCccEEEeCC----------------
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPG---------------- 506 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~--~p~~G~I~i~g---------------- 506 (1099)
|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+. +|++|+|.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 47899999995 467999999999999999999999999999999999997 79999999862
Q ss_pred -------CC----------------ccccccEEEEecC-CCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh
Q 001329 507 -------VG----------------SDLNKEIFYVPQR-PYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561 (1099)
Q Consensus 507 -------~~----------------~~~r~~i~~v~Q~-p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 561 (1099)
.+ ..+++.++|+||+ +.++. .|+.||+.++...........++++.++++.+|++
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 10 0135679999998 45554 69999998754221111112245688899999999
Q ss_pred hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhH
Q 001329 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPAL 637 (1099)
Q Consensus 562 ~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~ 637 (1099)
++.++.|. +|||||||||+|||||+.+|++|||||||++||+.+..++.+.+++ .|.|+|+||||++.
T Consensus 160 ~~~~~~~~--------~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 160 HRITHIAR--------DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred hhhhcCcc--------cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 88888774 8999999999999999999999999999999999999998776643 48999999999998
Q ss_pred HH-hcCEEEEEeCC
Q 001329 638 VA-FHDVVLSLDGE 650 (1099)
Q Consensus 638 i~-~~D~Il~l~~~ 650 (1099)
+. .||+|++|+++
T Consensus 232 ~~~~~d~i~~l~~G 245 (520)
T TIGR03269 232 IEDLSDKAIWLENG 245 (520)
T ss_pred HHHhcCEEEEEeCC
Confidence 85 68999999864
No 306
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.4e-34 Score=317.37 Aligned_cols=182 Identities=26% Similarity=0.317 Sum_probs=154.3
Q ss_pred EEcCCCCceeeeeeEEEe-----CCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCC-C
Q 001329 452 VVTPTGNVLVENLTLKVE-----PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT-A 525 (1099)
Q Consensus 452 ~~y~~~~~vL~~vsl~i~-----~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l-~ 525 (1099)
|+|++..+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .|+|+||++.. +
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------~i~~~~q~~~~~~ 74 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------TVSYKPQYIKADY 74 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------eEEEecccccCCC
Confidence 346655667888888887 69999999999999999999999999999999999884 69999999874 5
Q ss_pred cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCC
Q 001329 526 VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605 (1099)
Q Consensus 526 ~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEp 605 (1099)
..|+.||+.+...... .......++++.+++.+..++.+ .+||||||||++|||||+.+|+++|||||
T Consensus 75 ~~tv~e~l~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~--------~~LSgGe~qrv~iaraL~~~p~llllDEP 142 (246)
T cd03237 75 EGTVRDLLSSITKDFY----THPYFKTEIAKPLQIEQILDREV--------PELSGGELQRVAIAACLSKDADIYLLDEP 142 (246)
T ss_pred CCCHHHHHHHHhhhcc----ccHHHHHHHHHHcCCHHHhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 7899999975432110 11234677899999988877766 38999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001329 606 TSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1099)
Q Consensus 606 TSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1099)
|++||+.++..+.+.+++ .|+|+|+|||+++.+. .||++++|++++
T Consensus 143 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 143 SAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEP 193 (246)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence 999999999998887764 3899999999999887 599999998754
No 307
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.1e-34 Score=318.88 Aligned_cols=190 Identities=24% Similarity=0.314 Sum_probs=158.2
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEe
Q 001329 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVP 519 (1099)
Q Consensus 446 ~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~ 519 (1099)
+++||++. .+|+|+||++++||+++|+||||||||||+++|+|++++ +|+|.++|.+ ..+++.++|+|
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEec
Confidence 46677763 279999999999999999999999999999999999965 8999999964 12346799999
Q ss_pred cCCCC-CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc---
Q 001329 520 QRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH--- 595 (1099)
Q Consensus 520 Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~--- 595 (1099)
|++.+ +..|+.+|+.++.... .......+++.++++.+++.+..++.+ .+||||||||++|||||+.
T Consensus 76 q~~~~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 76 QQQTPPFAMPVFQYLTLHQPDK-TRTEAVASALNEVAEALGLDDKLGRSV--------NQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred ccCccCCCccHHHHHHhcCccC-CCcHHHHHHHHHHHHHcCCHhHhcCCc--------ccCCHHHHHHHHHHHHHhcccc
Confidence 99854 4679999998764221 111122456788999999988777766 3899999999999999997
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 596 ----KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 596 ----~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 209 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQG 209 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 6799999999999999999999888764 489999999999966 579999999875
No 308
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1e-34 Score=349.88 Aligned_cols=197 Identities=23% Similarity=0.328 Sum_probs=164.5
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC--CccEEEeCCCC-c------cccccE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVG-S------DLNKEI 515 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p--~~G~I~i~g~~-~------~~r~~i 515 (1099)
|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+ . ..++.+
T Consensus 2 l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 78999999995 46799999999999999999999999999999999999987 79999999964 1 124679
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCCC----cCCcCCHHHHHHHHHhcCChhHH-hcCCCCcccCCCCCcChHHHHHHHH
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELSLGEQQRLGM 589 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~----~~~~~~~~~i~~~l~~~~l~~~~-~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1099)
+||||++.++. .|+.||+.++..... .......+++.++++.+++.+.. ++.+ .+||||||||++|
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv~i 152 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV--------GDYGGGQQQLVEI 152 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch--------hhCCHHHHHHHHH
Confidence 99999987665 599999987643210 00111234677889999997654 3434 3799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 590 ARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||||+.+|+++||||||++||+.+...+.+.+++ .|.|+|+|||+++.+. .||+|++|+++
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G 217 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDG 217 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999887654 5899999999999875 69999999864
No 309
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-35 Score=289.86 Aligned_cols=198 Identities=26% Similarity=0.370 Sum_probs=172.0
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------------ccc
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------------SDL 511 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------------~~~ 511 (1099)
.|+++|+++.|. ...+|.||+|+.+.||.+.+.||||+|||||+|.+.=+.-|.+|+..+-|.. .++
T Consensus 2 sirv~~in~~yg-~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFYG-AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEcccccccc-cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 478999999884 5679999999999999999999999999999999999999999999997752 257
Q ss_pred cccEEEEecCCCCC-cccHHHHhccC-CCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001329 512 NKEIFYVPQRPYTA-VGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1099)
Q Consensus 512 r~~i~~v~Q~p~l~-~~Ti~eni~~~-~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1099)
|+++|+|||.-.+. ..||-||+... ....+..+.....+..++++++.+.++.+++|. .|||||+|||||
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl--------hlsggqqqrvai 152 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL--------HLSGGQQQRVAI 152 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCce--------ecccchhhhHHH
Confidence 89999999998775 47999999863 222233333455678899999999999999996 799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 590 ARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||||+.+|++|++||||++|||+...++.+.+++ .|+|-+++||..+..+ .+.+++.|+++
T Consensus 153 aralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g 217 (242)
T COG4161 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENG 217 (242)
T ss_pred HHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecC
Confidence 9999999999999999999999999998877765 5999999999999886 57899999874
No 310
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.2e-34 Score=350.74 Aligned_cols=199 Identities=26% Similarity=0.339 Sum_probs=165.7
Q ss_pred CcEEEEeeEEEcCC----CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeC-CCC----c----
Q 001329 443 NYIEFSGVKVVTPT----GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP-GVG----S---- 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~----~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~-g~~----~---- 509 (1099)
..|+++||++.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++ |.+ .
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 47999999999953 2579999999999999999999999999999999999999999999995 521 0
Q ss_pred ----cccccEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChh-----HHhcCCCCcccCCCCCc
Q 001329 510 ----DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-----LLDRYPPEKEINWGDEL 579 (1099)
Q Consensus 510 ----~~r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-----~~~~~p~~~~~~~g~~L 579 (1099)
..+++++|+||++.++. .|+.||+.++.... ......++++.++++.+++.+ +.++.| .+|
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~--------~~L 428 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE-LPDELARMKAVITLKMVGFDEEKAEEILDKYP--------DEL 428 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh--------hhC
Confidence 13467999999987665 69999998642111 011112356778999999964 566666 389
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 429 SgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G 504 (520)
T TIGR03269 429 SEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDG 504 (520)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999888743 4899999999999875 68999999864
No 311
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=357.54 Aligned_cols=199 Identities=25% Similarity=0.344 Sum_probs=171.4
Q ss_pred cEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c-----cc---
Q 001329 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----DL--- 511 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~~--- 511 (1099)
.++++|+++.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 68999999999642 479999999999999999999999999999999999999999999999965 1 11
Q ss_pred -cccEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001329 512 -NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1099)
Q Consensus 512 -r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1099)
++.++|+||++.++. .|+.||+.++...........++++.++++.+++.+..++.|. +||||||||++|
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~--------~LS~Gq~qrv~L 155 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPS--------QLSGGQQQRVSI 155 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcc--------cCCHHHHHHHHH
Confidence 468999999999886 5999999874321111111234567889999999988888774 899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 590 ARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||||+++|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+..||++++|+++
T Consensus 156 AraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G 219 (648)
T PRK10535 156 ARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDG 219 (648)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999887764 489999999999999899999999864
No 312
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2e-34 Score=306.82 Aligned_cols=166 Identities=28% Similarity=0.392 Sum_probs=142.6
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCc--CcCCccEEEeCCCC-c-----c-ccccE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-S-----D-LNKEI 515 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl--~~p~~G~I~i~g~~-~-----~-~r~~i 515 (1099)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.+ . . .+..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 46899999996 46799999999999999999999999999999999999 58999999999964 1 1 23469
Q ss_pred EEEecCCCCCcc-cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 516 FYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 516 ~~v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
+|+||+|.++.+ ++.+++ +..+ .+||||||||++||||++
T Consensus 80 ~~v~q~~~~~~~~~~~~~l-------------------------------~~~~--------~~LS~G~~qrv~laral~ 120 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL-------------------------------RYVN--------EGFSGGEKKRNEILQLLL 120 (200)
T ss_pred EEeecChhhccCccHHHHH-------------------------------hhcc--------ccCCHHHHHHHHHHHHHh
Confidence 999999977654 444443 1122 269999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH--hcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA--FHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~--~~D~Il~l~~~ 650 (1099)
.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .+|++++|+++
T Consensus 121 ~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G 181 (200)
T cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDG 181 (200)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999888764 3899999999999887 69999999864
No 313
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.4e-34 Score=347.92 Aligned_cols=190 Identities=22% Similarity=0.244 Sum_probs=163.6
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...++.++|
T Consensus 3 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLS-DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcC-CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 589999999996 4569999999999999999999999999999999999999999999998853 123456999
Q ss_pred EecCCCCC---------cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001329 518 VPQRPYTA---------VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1099)
Q Consensus 518 v~Q~p~l~---------~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1099)
++|++... ..|+.+|+..+. ...+++.++++.+++++..++.+. +||||||||++
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~ 145 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV--------KDPARCEQLAQQFGITALLDRRFK--------YLSTGETRKTL 145 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch--------hHHHHHHHHHHHcCCHhhhhCCcc--------cCCHHHHHHHH
Confidence 99987531 347888775431 134578889999999988888774 89999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 589 IARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||||+.+|+++||||||++||+.+.+++.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G 211 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADC 211 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999888765 3899999999999875 68999999864
No 314
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.3e-35 Score=292.32 Aligned_cols=227 Identities=22% Similarity=0.325 Sum_probs=185.3
Q ss_pred cEEEEeeEEEcCC--------CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----cc
Q 001329 444 YIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SD 510 (1099)
Q Consensus 444 ~I~~~~v~~~y~~--------~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~ 510 (1099)
.++++|+++.|.. ...+++.|||++++|+++||+|+||||||||.|+|+|..+|++|+|.+||.. .+
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 4678888876642 1368999999999999999999999999999999999999999999999975 22
Q ss_pred c-cccEEEEecCCCC---CcccHHHHhccCCCCCCcC-CcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001329 511 L-NKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 511 ~-r~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
. .++|-++||||.. +...|...+..|....... +....+++.+-|+.+||- +..+-+|+ .||.|||
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~--------~la~~QK 155 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH--------MLAPGQK 155 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchh--------hcCchhH
Confidence 3 3689999999963 2235666666666543222 234557788999999984 55666664 7999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH----HHhcCcEEEEEccChhHHHh-cCEEEEEeCCCceEEeecC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK----VRAMGTSCITISHRPALVAF-HDVVLSLDGEGEWRVHDKR 659 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~----l~~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~~~~~~~~ 659 (1099)
||||+||||+.+|+|+|.||+..+||...+.++.++ .++.|.+.|.|+.++..+++ +|.|+||+++
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG--------- 226 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEG--------- 226 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecC---------
Confidence 999999999999999999999999999999987764 34569999999999999986 7999999853
Q ss_pred CCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCC
Q 001329 660 DGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP 717 (1099)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p 717 (1099)
+++|.|.+.+++.. |.|+.|+.|+++--
T Consensus 227 -----------------------------~vvE~G~t~~v~a~-P~~~~TkRlieShF 254 (267)
T COG4167 227 -----------------------------EVVERGSTADVLAS-PLHELTKRLIESHF 254 (267)
T ss_pred -----------------------------ceeecCChhhhhcC-CccHHHHHHHHHHh
Confidence 35666777888874 89999999998653
No 315
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-34 Score=350.10 Aligned_cols=200 Identities=21% Similarity=0.259 Sum_probs=165.2
Q ss_pred CcEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-CCccEEEeCCCC-------cccc
Q 001329 443 NYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-LVSGHIAKPGVG-------SDLN 512 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~--~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-p~~G~I~i~g~~-------~~~r 512 (1099)
..|+++||++.|+. ++++++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+ ...+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 46999999999852 4579999999999999999999999999999999999998 599999999854 1234
Q ss_pred ccEEEEecCCC---CC-cccHHHHhccCCCC-C-C---cCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChH
Q 001329 513 KEIFYVPQRPY---TA-VGTLRDQLIYPLTS-D-Q---EVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLG 582 (1099)
Q Consensus 513 ~~i~~v~Q~p~---l~-~~Ti~eni~~~~~~-~-~---~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGG 582 (1099)
+.++|+||++. ++ ..|+.||+.++... . . .......+++.++++.+++. +..++.+ .+||||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG 409 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI--------ARLSGG 409 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc--------ccCCHH
Confidence 57999999962 44 46999999875311 0 0 00111235678899999996 4666666 389999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||||++|||||+.+|++|||||||++||+.+.+.+.+.++ +.|.|+|+||||++.+. .||++++|+++
T Consensus 410 ~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G 481 (506)
T PRK13549 410 NQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEG 481 (506)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999888765 35899999999999875 69999999864
No 316
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.2e-34 Score=349.39 Aligned_cols=194 Identities=21% Similarity=0.328 Sum_probs=163.6
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCC
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p 522 (1099)
..|+++||++.|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ +..|+||||+|
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----~~~i~~v~Q~~ 79 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----GIKVGYLPQEP 79 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----CCEEEEEecCC
Confidence 4799999999996357899999999999999999999999999999999999999999999875 24799999999
Q ss_pred CCCc-ccHHHHhccCCCCC--------------CcCC----------------------cCCHHHHHHHHHhcCChhHHh
Q 001329 523 YTAV-GTLRDQLIYPLTSD--------------QEVE----------------------PLTHGGMVELLKNVDLEYLLD 565 (1099)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~--------------~~~~----------------------~~~~~~i~~~l~~~~l~~~~~ 565 (1099)
.++. .|+.||+.++.... .... ...++++.++++.+|+.. .+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~ 158 (556)
T PRK11819 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WD 158 (556)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-cc
Confidence 8775 59999998753100 0000 001345677788888853 34
Q ss_pred cCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEE
Q 001329 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVV 644 (1099)
Q Consensus 566 ~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~I 644 (1099)
+.+ .+|||||||||+|||||+.+|+++||||||++||+.+...+.+.+++.+.|+|+|||+++.+. .+|+|
T Consensus 159 ~~~--------~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 159 AKV--------TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred Cch--------hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeE
Confidence 433 489999999999999999999999999999999999999999999987789999999999886 58999
Q ss_pred EEEeCC
Q 001329 645 LSLDGE 650 (1099)
Q Consensus 645 l~l~~~ 650 (1099)
++|+++
T Consensus 231 ~~l~~g 236 (556)
T PRK11819 231 LELDRG 236 (556)
T ss_pred EEEeCC
Confidence 999964
No 317
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-34 Score=348.08 Aligned_cols=197 Identities=18% Similarity=0.187 Sum_probs=163.8
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i 515 (1099)
..++++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++++
T Consensus 264 ~~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 264 TVFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred cEEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 4699999998652 48999999999999999999999999999999999999999999999854 1235679
Q ss_pred EEEecCC---CCC-cccHHHHhccCCCCC--------Cc-CCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcCh
Q 001329 516 FYVPQRP---YTA-VGTLRDQLIYPLTSD--------QE-VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSL 581 (1099)
Q Consensus 516 ~~v~Q~p---~l~-~~Ti~eni~~~~~~~--------~~-~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSG 581 (1099)
+||||++ .++ ..|+.||+.++.... .. ......+++.++++.+++. +..++.|. +|||
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------~LSg 412 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT--------ELSG 412 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc--------cCCh
Confidence 9999984 344 469999998753210 00 0111224577899999996 66777663 8999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||||||+|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|+|+||||++.+. .||++++|+++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G 485 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEG 485 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECC
Confidence 999999999999999999999999999999999999888764 4899999999998775 69999999864
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-34 Score=346.53 Aligned_cols=192 Identities=20% Similarity=0.246 Sum_probs=163.4
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCC
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l 524 (1099)
|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. .+++|++|++.+
T Consensus 2 l~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----~~i~~~~q~~~~ 75 (530)
T PRK15064 2 LSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----ERLGKLRQDQFA 75 (530)
T ss_pred EEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----CEEEEEeccCCc
Confidence 78999999995 468999999999999999999999999999999999999999999999873 469999999876
Q ss_pred Cc-ccHHHHhccCCCC-----------CCcC---------------------CcCCHHHHHHHHHhcCChhHHh-cCCCC
Q 001329 525 AV-GTLRDQLIYPLTS-----------DQEV---------------------EPLTHGGMVELLKNVDLEYLLD-RYPPE 570 (1099)
Q Consensus 525 ~~-~Ti~eni~~~~~~-----------~~~~---------------------~~~~~~~i~~~l~~~~l~~~~~-~~p~~ 570 (1099)
+. .|+.||+.++... .... ....++++.++++.+|+.+... +.+
T Consensus 76 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-- 153 (530)
T PRK15064 76 FEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLM-- 153 (530)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCch--
Confidence 64 5999999865310 0000 0012346778899999976443 333
Q ss_pred cccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeC
Q 001329 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 649 (1099)
Q Consensus 571 ~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1099)
.+||||||||++|||||+.+|++|||||||++||+.+..++.+.+++.|.|||+||||++.+. .||+|++|++
T Consensus 154 ------~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~ 227 (530)
T PRK15064 154 ------SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDY 227 (530)
T ss_pred ------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeC
Confidence 389999999999999999999999999999999999999999999888999999999999875 6899999986
Q ss_pred C
Q 001329 650 E 650 (1099)
Q Consensus 650 ~ 650 (1099)
+
T Consensus 228 g 228 (530)
T PRK15064 228 G 228 (530)
T ss_pred C
Confidence 4
No 319
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-34 Score=287.22 Aligned_cols=222 Identities=21% Similarity=0.353 Sum_probs=178.0
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----------c--
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----------S-- 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----------~-- 509 (1099)
+.++++++++.|. +....+||||++.|||.++|||+||||||||+++|++-+.|++|+|.+.-.+ .
T Consensus 5 PLL~V~~lsk~Yg-~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 5 PLLSVSGLSKLYG-PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred cceeehhhhhhhC-CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 4689999999885 4568999999999999999999999999999999999999999999886432 0
Q ss_pred --cccccEEEEecCCCCC-------cccHHHHhcc-CCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCC
Q 001329 510 --DLNKEIFYVPQRPYTA-------VGTLRDQLIY-PLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDE 578 (1099)
Q Consensus 510 --~~r~~i~~v~Q~p~l~-------~~Ti~eni~~-~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~ 578 (1099)
-+|..-|+|.|+|.-- -+.|.|-+.- +....+ ...++..+.++++.++ +-++..| ..
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG----~iR~~a~~WL~~VEI~~~RiDD~P--------rt 151 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG----NIRAEAQDWLEEVEIDLDRIDDLP--------RT 151 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh----hHHHHHHHHHHhcccCcccccCcc--------cc
Confidence 1356789999999521 1244443332 211111 1345667788998886 3456666 48
Q ss_pred cChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHHHh-cCEEEEEeCCCce
Q 001329 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVAF-HDVVLSLDGEGEW 653 (1099)
Q Consensus 579 LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~~ 653 (1099)
+|||||||+.|||-|+..|+++++||||.+||...+++++++++ +.|..++++|||+..++. +|+..+|++
T Consensus 152 FSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~---- 227 (258)
T COG4107 152 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQ---- 227 (258)
T ss_pred cchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecC----
Confidence 99999999999999999999999999999999999999988775 469999999999999874 678776653
Q ss_pred EEeecCCCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcC
Q 001329 654 RVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAAS 716 (1099)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~ 716 (1099)
|+++|.+-++.++.. |.|||||-|.+++
T Consensus 228 ----------------------------------g~vve~GLTDrvLDD-P~hPYTQLLVSsv 255 (258)
T COG4107 228 ----------------------------------GQVVESGLTDRVLDD-PHHPYTQLLVSSV 255 (258)
T ss_pred ----------------------------------CCEeccccccccccC-CCCchHHHHHHHh
Confidence 456677888888875 8999999998875
No 320
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7e-34 Score=293.05 Aligned_cols=147 Identities=35% Similarity=0.455 Sum_probs=130.6
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c------cccccEEE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEIFY 517 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~~r~~i~~ 517 (1099)
|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++|
T Consensus 1 l~~~~l~~~~~-~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFG-GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 47899999996 4579999999999999999999999999999999999999999999999853 1 12345666
Q ss_pred EecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001329 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1099)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1099)
+|| ||||||||++||||++.+|
T Consensus 80 ~~q----------------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 80 VYQ----------------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred EEe----------------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 665 8999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 598 ~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++++++
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g 158 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDG 158 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999888764 3899999999999765 69999999864
No 321
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-34 Score=332.06 Aligned_cols=199 Identities=28% Similarity=0.368 Sum_probs=166.9
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i 515 (1099)
..++++|++++|+ +.++|+||||++.+||+++|+|+||||||||+|+|+|.|+|++|+|.++|.. +.....|
T Consensus 7 ~ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 7 PLLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred ceeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 4689999999996 5789999999999999999999999999999999999999999999999964 2345679
Q ss_pred EEEecCCCCC-cccHHHHhccCCCCCCc----CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001329 516 FYVPQRPYTA-VGTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1099)
Q Consensus 516 ~~v~Q~p~l~-~~Ti~eni~~~~~~~~~----~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1099)
++|+|++.+. +.||.|||.++...... ..+...++..++++.+++..-.+. ...+||+||||.|+||
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~--------~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDT--------LVGDLSIAQRQMVEIA 157 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhh--------hhhhCCHHHHHHHHHH
Confidence 9999999865 57999999887654321 112234567778888888521222 1248999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 591 RAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
||+..+++++|||||||+|+....+.+++.++ +.|.++|+||||++.+ +.||+|.||.++
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG 221 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDG 221 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCC
Confidence 99999999999999999999998888777654 5799999999999977 469999999864
No 322
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.3e-35 Score=304.67 Aligned_cols=198 Identities=27% Similarity=0.344 Sum_probs=170.9
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--ccccccEEEEecC
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDLNKEIFYVPQR 521 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~~~r~~i~~v~Q~ 521 (1099)
.+++++|+++| +++.+++|+||++++|++.|++||||+||||.+|+|+|+++|++|+|.++|.+ ...+.+|||+|.+
T Consensus 2 ~L~ie~vtK~F-g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE 80 (300)
T COG4152 2 ALEIEGVTKSF-GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE 80 (300)
T ss_pred ceEEecchhcc-CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhh
Confidence 47899999998 46789999999999999999999999999999999999999999999999976 4456789999999
Q ss_pred CCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001329 522 PYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1099)
Q Consensus 522 p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1099)
--++ ..|+.|++.|-....+....+...++...|+++++.+...+.. .+||-|++|++.+--+++|+|+++
T Consensus 81 RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kI--------k~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 81 RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKI--------KELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchH--------HHhhhhhhHHHHHHHHHhcCCCEE
Confidence 8776 4799999998655544444444566777888888876544432 489999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 601 ILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 601 iLDEpTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||||+|||||.+.+.+.+.+. +.|.|||++||+++-+. -||++++|+++
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG 206 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKG 206 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCC
Confidence 9999999999999998887654 56999999999999886 69999999865
No 323
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.3e-34 Score=345.50 Aligned_cols=200 Identities=19% Similarity=0.208 Sum_probs=164.2
Q ss_pred CcEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-CccEEEeCCCC-------cccc
Q 001329 443 NYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVG-------SDLN 512 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~--~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~-------~~~r 512 (1099)
..|+++|+++.|++ ++++++|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|.++|.+ ..++
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 46999999998842 35799999999999999999999999999999999999985 89999999854 1235
Q ss_pred ccEEEEecCC---CCC-cccHHHHhccCCCC-CCc----CCcCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChH
Q 001329 513 KEIFYVPQRP---YTA-VGTLRDQLIYPLTS-DQE----VEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLG 582 (1099)
Q Consensus 513 ~~i~~v~Q~p---~l~-~~Ti~eni~~~~~~-~~~----~~~~~~~~i~~~l~~~~l~~-~~~~~p~~~~~~~g~~LSGG 582 (1099)
++++|+||++ .++ ..|++||+.++... ... ......+++.++++.+++.+ ..++.+ .+||||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG 407 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI--------GRLSGG 407 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc--------ccCCHH
Confidence 6899999996 244 46999999875321 000 00112346788999999963 456655 389999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||||++|||||+.+|++|||||||++||+.+...+++.+++ .|.|+|++|||++.+. .||++++|+++
T Consensus 408 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G 479 (500)
T TIGR02633 408 NQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEG 479 (500)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999998876643 5899999999999875 68999999864
No 324
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=6.9e-34 Score=307.68 Aligned_cols=174 Identities=28% Similarity=0.340 Sum_probs=147.3
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-ccccccEEEEecCCCC---CcccHHHHhccCCCCC-
Q 001329 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPYT---AVGTLRDQLIYPLTSD- 540 (1099)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~~r~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~- 540 (1099)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+.+++++|+||+|.+ +..|+.||+.++....
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 5789999999999999999999999999999999999999975 2345689999999865 3479999998753211
Q ss_pred Cc---CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 001329 541 QE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617 (1099)
Q Consensus 541 ~~---~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l 617 (1099)
.. .....++++.++++.+++.++.++.+ .+||||||||++|||||+++|+++||||||++||+.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPV--------GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 00 01123456888999999988777766 37999999999999999999999999999999999999999
Q ss_pred HHHHHh---cCcEEEEEccChhHHH-hcCEEEEE
Q 001329 618 CAKVRA---MGTSCITISHRPALVA-FHDVVLSL 647 (1099)
Q Consensus 618 ~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l 647 (1099)
.+.+++ .|.|+|++||+++.+. .+|+++++
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l 186 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDLAQAMATCDRVVLL 186 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 888764 4889999999999775 68999999
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=341.55 Aligned_cols=189 Identities=24% Similarity=0.257 Sum_probs=165.2
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCC
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p 522 (1099)
..|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. +.++|+||++
T Consensus 318 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----~~i~~~~q~~ 391 (530)
T PRK15064 318 NALEVENLTKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----ANIGYYAQDH 391 (530)
T ss_pred ceEEEEeeEEeeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----eEEEEEcccc
Confidence 4799999999995 457999999999999999999999999999999999999999999999883 5799999997
Q ss_pred C--CC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 523 Y--TA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 523 ~--l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
. ++ ..|+.||+.+... ....++++.++++.+++. +..++.+ .+||||||||++||||++.+|+
T Consensus 392 ~~~~~~~~t~~~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGq~qrv~la~al~~~p~ 458 (530)
T PRK15064 392 AYDFENDLTLFDWMSQWRQ-----EGDDEQAVRGTLGRLLFSQDDIKKSV--------KVLSGGEKGRMLFGKLMMQKPN 458 (530)
T ss_pred cccCCCCCcHHHHHHHhcc-----CCccHHHHHHHHHHcCCChhHhcCcc--------cccCHHHHHHHHHHHHHhcCCC
Confidence 4 33 3699999864211 112356788899999994 6667766 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|||||||++||+.+...+.+.+++.+.|+|+|||+++.+. .||++++|+++
T Consensus 459 lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g 511 (530)
T PRK15064 459 VLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPD 511 (530)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999988789999999999876 58999999864
No 326
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-33 Score=312.27 Aligned_cols=178 Identities=18% Similarity=0.256 Sum_probs=148.8
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCC-cccHHHHhccC
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTA-VGTLRDQLIYP 536 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~-~~Ti~eni~~~ 536 (1099)
+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++++++|++.++ ..|+.||+.++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g-------~~~~~~~~~~~~~~~tv~enl~~~ 109 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-------EVSVIAISAGLSGQLTGIENIEFK 109 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC-------EEeEEecccCCCCCCcHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999998 367888888665 46999999764
Q ss_pred CCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001329 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1099)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~ 616 (1099)
............+.+.++++.+++.++.++.+ .+||||||||++||||++.+|+++||||||++||+.+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~ 181 (264)
T PRK13546 110 MLCMGFKRKEIKAMTPKIIEFSELGEFIYQPV--------KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQK 181 (264)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcCCc--------ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHH
Confidence 22111111112234556788889988777755 4899999999999999999999999999999999999999
Q ss_pred HHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 617 FCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 617 l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+.+.+.+ .|.|+|++||++..+. .+|+|++|+++
T Consensus 182 l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 182 CLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred HHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 8887654 4899999999999875 58999999864
No 327
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.7e-33 Score=343.02 Aligned_cols=195 Identities=22% Similarity=0.274 Sum_probs=164.7
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCC
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p 522 (1099)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++. .+|+|+||++
T Consensus 321 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~-----~~i~~v~q~~ 394 (552)
T TIGR03719 321 KVIEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET-----VKLAYVDQSR 394 (552)
T ss_pred eEEEEeeEEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc-----eEEEEEeCCc
Confidence 4799999999995 457999999999999999999999999999999999999999999998541 2699999997
Q ss_pred C-CC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 523 Y-TA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 523 ~-l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
. ++ ..|+.||+.++....... ..+.+..++++.+++.+ ..++.| .+||||||||++|||||+.+|++
T Consensus 395 ~~~~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGe~qrv~la~al~~~p~l 464 (552)
T TIGR03719 395 DALDPNKTVWEEISGGLDIIQLG--KREVPSRAYVGRFNFKGSDQQKKV--------GQLSGGERNRVHLAKTLKSGGNV 464 (552)
T ss_pred cccCCCCcHHHHHHhhccccccC--cchHHHHHHHHhCCCChhHhcCch--------hhCCHHHHHHHHHHHHHhhCCCE
Confidence 3 44 469999998864321111 11334567899999964 456655 38999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCCce
Q 001329 600 AILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGEW 653 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~ 653 (1099)
+||||||++||+.+...+.+.+++.+.|+|+|||+++.+. .||+|++|+++|..
T Consensus 465 llLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~ 519 (552)
T TIGR03719 465 LLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHV 519 (552)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeE
Confidence 9999999999999999999999987669999999999876 58999999875533
No 328
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.3e-33 Score=344.08 Aligned_cols=202 Identities=22% Similarity=0.337 Sum_probs=158.4
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCC
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~ 523 (1099)
.++++||++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++ +..|+||||+|.
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----~~~i~~v~Q~~~ 78 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----GIKVGYLPQEPQ 78 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----CCEEEEEeccCC
Confidence 689999999996456899999999999999999999999999999999999999999999976 247999999998
Q ss_pred CCc-ccHHHHhccCCCCC--------------CcCCcC------CHHHHHHHHHhcCChhH-------HhcCCCCcccCC
Q 001329 524 TAV-GTLRDQLIYPLTSD--------------QEVEPL------THGGMVELLKNVDLEYL-------LDRYPPEKEINW 575 (1099)
Q Consensus 524 l~~-~Ti~eni~~~~~~~--------------~~~~~~------~~~~i~~~l~~~~l~~~-------~~~~p~~~~~~~ 575 (1099)
++. .|+.||+.++.... ...... ..+++.+.++.+++++. ++....+.....
T Consensus 79 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 158 (552)
T TIGR03719 79 LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDAD 158 (552)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCc
Confidence 764 59999998753210 000000 01233444444443211 111110000012
Q ss_pred CCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
..+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++.+.|+|+|||+++.+. .||++++|+++
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g 234 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRG 234 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECC
Confidence 3589999999999999999999999999999999999999999999887789999999999886 58999999864
No 329
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.6e-33 Score=343.26 Aligned_cols=196 Identities=21% Similarity=0.268 Sum_probs=165.2
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCC
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p 522 (1099)
..++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++. ..|||+||++
T Consensus 323 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----~~i~~v~q~~ 396 (556)
T PRK11819 323 KVIEAENLSKSFG-DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET-----VKLAYVDQSR 396 (556)
T ss_pred eEEEEEeEEEEEC-CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----eEEEEEeCch
Confidence 4799999999995 457999999999999999999999999999999999999999999999542 2699999997
Q ss_pred -CCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 523 -YTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 523 -~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
.++ ..|+.||+.++...... ...+.+..++++.+++.+ ..++.+ .+||||||||++||||++.+|++
T Consensus 397 ~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~l 466 (556)
T PRK11819 397 DALDPNKTVWEEISGGLDIIKV--GNREIPSRAYVGRFNFKGGDQQKKV--------GVLSGGERNRLHLAKTLKQGGNV 466 (556)
T ss_pred hhcCCCCCHHHHHHhhcccccc--cccHHHHHHHHHhCCCChhHhcCch--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 444 46999999876422111 112334567899999964 456666 38999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCCceE
Q 001329 600 AILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGEWR 654 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~ 654 (1099)
+||||||++||+.+...+.+.+++.+.|+|+|||+++.+. .||+|++++++|...
T Consensus 467 llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 467 LLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 9999999999999999999999887569999999999875 589999998755444
No 330
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-33 Score=329.17 Aligned_cols=194 Identities=20% Similarity=0.208 Sum_probs=159.6
Q ss_pred CCcEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEe
Q 001329 442 ANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP 519 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~--~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~ 519 (1099)
...++++|+++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~-------~~i~ 91 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA-------ALIA 91 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe-------eeEE
Confidence 3479999999998764 469999999999999999999999999999999999999999999999853 2233
Q ss_pred cCCCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
+.+.++ ..|++||+.+.............+++.++++.+++.++.++.+ .+||||||||++|||||+.+|+
T Consensus 92 ~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~--------~~LSGGQrQRVaLArAL~~~P~ 163 (549)
T PRK13545 92 ISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPV--------KTYSSGMKSRLGFAISVHINPD 163 (549)
T ss_pred eccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCc--------ccCCHHHHHHHHHHHHHHhCCC
Confidence 344333 4699999976432111111112344667899999998888766 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 164 LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~G 219 (549)
T PRK13545 164 ILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYG 219 (549)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999998887754 4899999999999875 59999999864
No 331
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.1e-33 Score=373.07 Aligned_cols=200 Identities=20% Similarity=0.232 Sum_probs=173.8
Q ss_pred CcEEEEeeEEEcC-CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEE
Q 001329 443 NYIEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIF 516 (1099)
Q Consensus 443 ~~I~~~~v~~~y~-~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~ 516 (1099)
..|+++||++.|+ +++++++|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ .+.|+.+|
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 4699999999996 35789999999999999999999999999999999999999999999999965 23567899
Q ss_pred EEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
|+||++.++. .|++||+.++....+......++++.++++.+||++..++.+. +||||||||++|||||+.
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~--------~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQ--------DLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHHc
Confidence 9999998775 6999999875432221111234568889999999988888774 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|+++||||||||||+.+++.+.+.+++ .|+|+|++||+++.+. .+|+|++|+++
T Consensus 1079 ~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~G 1136 (2272)
T TIGR01257 1079 DAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQG 1136 (2272)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999988865 3899999999999886 68999999864
No 332
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=5.4e-33 Score=280.68 Aligned_cols=142 Identities=25% Similarity=0.443 Sum_probs=132.3
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCC
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l 524 (1099)
++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++|+||
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----~~i~~~~~---- 70 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----VKIGYFEQ---- 70 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----EEEEEEcc----
Confidence 468999999864 47999999999999999999999999999999999999999999999983 47899988
Q ss_pred CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeC
Q 001329 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1099)
Q Consensus 525 ~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDE 604 (1099)
||+||+||++||||++.+|+++||||
T Consensus 71 ------------------------------------------------------lS~G~~~rv~laral~~~p~illlDE 96 (144)
T cd03221 71 ------------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDE 96 (144)
T ss_pred ------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 89999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 605 CTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 605 pTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||++||+.+...+.+.+++.+.|+|++||+++.+. .+|++++|+++
T Consensus 97 P~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~~l~~g 143 (144)
T cd03221 97 PTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDG 143 (144)
T ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999888899999999999885 58999999764
No 333
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=339.40 Aligned_cols=195 Identities=18% Similarity=0.253 Sum_probs=161.3
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i 515 (1099)
..++++|+++ ..+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++.+
T Consensus 256 ~~l~~~~~~~-----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 256 VRLRLDGLKG-----PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred cEEEEecccc-----CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 3589999984 248999999999999999999999999999999999999999999999854 1234689
Q ss_pred EEEecCC----CCCcccHHHHhccCCCCCC---c---CCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001329 516 FYVPQRP----YTAVGTLRDQLIYPLTSDQ---E---VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 516 ~~v~Q~p----~l~~~Ti~eni~~~~~~~~---~---~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
+|+||+| ..+..|+.||+.++..... . ......+++.++++.+++. +..++.|. +||||||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------~LSgGq~ 402 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM--------NLSGGNQ 402 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc--------cCCHHHH
Confidence 9999997 3445799999987532110 0 0111234677899999994 56666663 8999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||++|||||+.+|++|||||||++||+.++.++.++++ +.|.|+|+||||++.+. .||++++|+++
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g 472 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREG 472 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999988764 35899999999999885 68999999864
No 334
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=339.36 Aligned_cols=194 Identities=20% Similarity=0.292 Sum_probs=161.1
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i 515 (1099)
..++++|+++ ++++|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ..+++++
T Consensus 256 ~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 256 VRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred cEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 4689999984 37999999999999999999999999999999999999999999999854 1235679
Q ss_pred EEEecCCC---C-CcccHHHHhccCCCCC--C----cCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001329 516 FYVPQRPY---T-AVGTLRDQLIYPLTSD--Q----EVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 516 ~~v~Q~p~---l-~~~Ti~eni~~~~~~~--~----~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
+||||+|. + +..|+.||+.++.... . .......+++.++++.+++. +..++.+ .+||||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGek 401 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI--------GLLSGGNQ 401 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch--------hhCCHHHH
Confidence 99999972 3 4579999998753110 0 00111235678899999994 5666665 38999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++|||++.+. .||++++|+++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 471 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEG 471 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECC
Confidence 999999999999999999999999999999998887764 4889999999999875 68999999864
No 335
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.3e-33 Score=368.55 Aligned_cols=201 Identities=20% Similarity=0.243 Sum_probs=172.0
Q ss_pred CCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccE
Q 001329 442 ANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEI 515 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i 515 (1099)
...|+++||++.|+++ +++|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.+ .+.+++|
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 4579999999999753 679999999999999999999999999999999999999999999999965 2346789
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
||+||++.++. .|++||+.+.....+...+..++.+.++++.+++.++.++.+. +||||||||++|||||+
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~--------~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAG--------TYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChh--------hCCHHHHHHHHHHHHHh
Confidence 99999987764 6999999864322211111123456788999999998888774 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
.+|+++||||||+|||+.+++.+.+.+++ .|+|+|++||+++.+. .||+|++|+++
T Consensus 2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G 2146 (2272)
T TIGR01257 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKG 2146 (2272)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999887754 4899999999999886 69999999864
No 336
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.7e-33 Score=319.37 Aligned_cols=199 Identities=28% Similarity=0.365 Sum_probs=170.1
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i 515 (1099)
..++++++++.|| +..+.+||||+|++||+.||.|+||+|||||+++|.|+|+|++|+|.++|+. +..+..|
T Consensus 3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 4689999999998 7789999999999999999999999999999999999999999999999974 3467789
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCCCc---CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~---~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1099)
|+|+|++.+++ .|+.|||..+...... ......+++.++.++.|++=-.++.. .+||-||||||.|-+
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V--------~dLsVG~qQRVEIlK 153 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV--------ADLSVGEQQRVEILK 153 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee--------ecCCcchhHHHHHHH
Confidence 99999998875 6999999998754211 11234566777888888763333332 479999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 592 AL~~~P~iliLDEpTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||+++|++||||||||-|-|...+++++.++ +.|+|||+|||++..+. .||++-||..+
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~G 216 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRG 216 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCC
Confidence 9999999999999999999999998887665 46999999999999886 59999999875
No 337
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.1e-33 Score=308.24 Aligned_cols=189 Identities=23% Similarity=0.287 Sum_probs=155.2
Q ss_pred EeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEE-----------eCCCC-c----cc
Q 001329 448 SGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA-----------KPGVG-S----DL 511 (1099)
Q Consensus 448 ~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~-----------i~g~~-~----~~ 511 (1099)
.+|+++|+++..+++|+| .+++||+++|+||||||||||+|+|+|+++|++|+|. ++|.+ . ..
T Consensus 4 ~~~~~~y~~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 367888865557999999 4999999999999999999999999999999999996 66754 1 11
Q ss_pred c---ccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001329 512 N---KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1099)
Q Consensus 512 r---~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1099)
+ ..+++++|++..+..++.+++.+.... ....+++.++++.+|+.+..++.+ .+||||||||++
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~ 149 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKK-----KDERGKLDELVDQLELRHVLDRNI--------DQLSGGELQRVA 149 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhch-----hHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHH
Confidence 1 247899998776655666666543211 123456788999999988777665 389999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 589 IARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||||++.+|+++||||||++||+.+...+.+.+++ .++|+|+|||+++.+. .||+|++|+++
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~~ 215 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYGE 215 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECCC
Confidence 99999999999999999999999999988877764 4899999999999887 69999999864
No 338
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.1e-33 Score=336.22 Aligned_cols=200 Identities=23% Similarity=0.258 Sum_probs=162.8
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-CccEEEeCCCC-------ccccc
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVG-------SDLNK 513 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~-------~~~r~ 513 (1099)
...|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|.++|.+ ...++
T Consensus 258 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 258 EPRIVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred CceEEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 35799999999995 45799999999999999999999999999999999999876 79999999853 12356
Q ss_pred cEEEEecCCCCCc---ccHHHHhccCCCC----CCcCCcCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHH
Q 001329 514 EIFYVPQRPYTAV---GTLRDQLIYPLTS----DQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQ 585 (1099)
Q Consensus 514 ~i~~v~Q~p~l~~---~Ti~eni~~~~~~----~~~~~~~~~~~i~~~l~~~~l~~-~~~~~p~~~~~~~g~~LSGGqrQ 585 (1099)
+++|++|++.++. .++.+++.++... ........++++.++++.+++.+ ..++.| .+|||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGq~q 408 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF--------HSLSWGQQR 408 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch--------hhCCHHHHH
Confidence 7999999986532 4677776543211 00001112356788999999986 777766 389999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cC-cEEEEEccChhHHH--hcCEEEEEeCC
Q 001329 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MG-TSCITISHRPALVA--FHDVVLSLDGE 650 (1099)
Q Consensus 586 RlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g-~TvI~ItH~l~~i~--~~D~Il~l~~~ 650 (1099)
|++|||||+.+|++|||||||++||+.+...+.+.+++ .+ .|+|+||||++.+. .+|++++|+++
T Consensus 409 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G 479 (490)
T PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDG 479 (490)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCC
Confidence 99999999999999999999999999999999987765 34 57999999999886 37999999864
No 339
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=3.2e-33 Score=344.59 Aligned_cols=198 Identities=22% Similarity=0.265 Sum_probs=159.4
Q ss_pred eeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCC--ccEEEeCCCC--ccccccEEEEecCCCC
Q 001329 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV--SGHIAKPGVG--SDLNKEIFYVPQRPYT 524 (1099)
Q Consensus 449 ~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~--~G~I~i~g~~--~~~r~~i~~v~Q~p~l 524 (1099)
|+++.|+ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.+||.+ .+.+++++||+|++.+
T Consensus 73 ~l~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l 151 (659)
T PLN03211 73 DETRQIQ-ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDIL 151 (659)
T ss_pred cccccCC-CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECccccc
Confidence 3444442 457999999999999999999999999999999999999885 8999999975 3445679999999988
Q ss_pred Cc-ccHHHHhccCCCCC---CcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001329 525 AV-GTLRDQLIYPLTSD---QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1099)
Q Consensus 525 ~~-~Ti~eni~~~~~~~---~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1099)
+. .|++||+.+..... ....+...+++.++++.+|+.+..+....+ ....+||||||||++|||+|+++|+++
T Consensus 152 ~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~---~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 152 YPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN---SFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred CCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCC---CCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 75 69999998753211 001111234577899999998765443211 123579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhH--HHhcCEEEEEeCC
Q 001329 601 ILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGE 650 (1099)
Q Consensus 601 iLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~--i~~~D~Il~l~~~ 650 (1099)
+|||||+|||+.++.++.+.+++ .|+|+|+++|+++. .+.+|+|++|+++
T Consensus 229 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G 283 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEG 283 (659)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCC
Confidence 99999999999999999888764 58999999999973 4679999999854
No 340
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.7e-32 Score=338.87 Aligned_cols=202 Identities=23% Similarity=0.273 Sum_probs=168.3
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCC
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p 522 (1099)
..|+++||++.|+ ++++++|+||+|++|++++|+||||||||||+|+|+|+.+|++|+|.+ |.+ -.|+|++|++
T Consensus 318 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~----~~i~y~~q~~ 391 (635)
T PRK11147 318 IVFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK----LEVAYFDQHR 391 (635)
T ss_pred ceEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC----cEEEEEeCcc
Confidence 4699999999995 467999999999999999999999999999999999999999999998 421 2699999986
Q ss_pred C-CC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 523 Y-TA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 523 ~-l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
. ++ ..|+.||+.++..... ......++.++++.+++. +..++.+ .+||||||||++|||||+.+|++
T Consensus 392 ~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGekqRl~la~al~~~p~l 461 (635)
T PRK11147 392 AELDPEKTVMDNLAEGKQEVM--VNGRPRHVLGYLQDFLFHPKRAMTPV--------KALSGGERNRLLLARLFLKPSNL 461 (635)
T ss_pred cccCCCCCHHHHHHhhccccc--ccchHHHHHHHHHhcCCCHHHHhChh--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 3 43 4699999987532110 011245677889999985 4566655 38999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCCceEEeecCC
Q 001329 600 AILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKRD 660 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~~~~~ 660 (1099)
|||||||++||+.+...+.+.+++.+.|+|+||||...+. .||+|++++++|.....++++
T Consensus 462 LlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y 523 (635)
T PRK11147 462 LILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGY 523 (635)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCH
Confidence 9999999999999999999999988779999999999875 699999998666555544444
No 341
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=2.8e-33 Score=319.19 Aligned_cols=167 Identities=27% Similarity=0.386 Sum_probs=141.7
Q ss_pred EEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHH
Q 001329 476 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGG 550 (1099)
Q Consensus 476 IvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~ 550 (1099)
|+||||||||||+|+|+|+++|++|+|.++|.+ ...+++++|+||++.++. .|++||+.++............++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 689999999999999999999999999999964 123568999999998875 599999998743211111122356
Q ss_pred HHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCc
Q 001329 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGT 626 (1099)
Q Consensus 551 i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~ 626 (1099)
+.++++.+++.++.++.|. +||||||||++|||||+.+|+++||||||++||+.++..+.+.+++ .|+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~--------~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ 152 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPH--------QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI 152 (325)
T ss_pred HHHHHHHcCCcchhcCChh--------hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 7889999999998888874 8999999999999999999999999999999999999998887754 389
Q ss_pred EEEEEccChhHHH-hcCEEEEEeCC
Q 001329 627 SCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 627 TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|+|+|||+++.+. .||+|++|+++
T Consensus 153 tiiivTHd~~e~~~~~d~i~vl~~G 177 (325)
T TIGR01187 153 TFVFVTHDQEEAMTMSDRIAIMRKG 177 (325)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999765 69999999864
No 342
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-33 Score=296.07 Aligned_cols=175 Identities=26% Similarity=0.361 Sum_probs=154.8
Q ss_pred eeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCC---C--c-----cccccEEEEecCCCCCc-ccHH
Q 001329 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV---G--S-----DLNKEIFYVPQRPYTAV-GTLR 530 (1099)
Q Consensus 462 ~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~---~--~-----~~r~~i~~v~Q~p~l~~-~Ti~ 530 (1099)
=++||+.+.-.++||-|+||||||||+|+|+|+..|++|+|.+||. | + .-+++|||||||.-+|+ .||+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 3678888887899999999999999999999999999999999995 2 1 22578999999998875 7999
Q ss_pred HHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 001329 531 DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610 (1099)
Q Consensus 531 eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD 610 (1099)
.|+.|+... .+.++..++.+.+|++++++++|. .|||||||||||+|||+.+|++|+||||.|+||
T Consensus 95 gNL~YG~~~------~~~~~fd~iv~lLGI~hLL~R~P~--------~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD 160 (352)
T COG4148 95 GNLRYGMWK------SMRAQFDQLVALLGIEHLLDRYPG--------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160 (352)
T ss_pred cchhhhhcc------cchHhHHHHHHHhCcHHHHhhCCC--------ccCcchhhHHHHHHHHhcCCCeeeecCchhhcc
Confidence 999998754 245678889999999999999995 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----hcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 611 TDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 611 ~~~~~~l~~~l~----~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
...+++++..++ +.++-|+.|||.++.+ +-||++++|+++
T Consensus 161 ~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~G 205 (352)
T COG4148 161 LPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENG 205 (352)
T ss_pred cchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCC
Confidence 999999876554 3589999999999876 469999999975
No 343
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=331.13 Aligned_cols=197 Identities=15% Similarity=0.168 Sum_probs=158.0
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c------cccccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~~r~~i 515 (1099)
..|+++|+++.+ +++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ . ..++.+
T Consensus 249 ~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 249 VILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred cEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 469999999863 469999999999999999999999999999999999999999999999854 1 124569
Q ss_pred EEEecCCC---CC-cccHHHHhccC-----CCCCCc-CCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001329 516 FYVPQRPY---TA-VGTLRDQLIYP-----LTSDQE-VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 516 ~~v~Q~p~---l~-~~Ti~eni~~~-----~~~~~~-~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
+|+||++. ++ ..|+.+|+.+. ...... ......+++.++++.+++. +..++.| .+||||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGq~ 397 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI--------GSLSGGNQ 397 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc--------ccCCcHHH
Confidence 99999963 33 35777664322 110000 0111234567788888885 4456555 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||++||||++.+|++|||||||++||+.+.+.+++.++ +.|.|+|+||||++.+. .||++++|+++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g 467 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNG 467 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999988774 45999999999999875 68999999864
No 344
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.2e-32 Score=331.87 Aligned_cols=185 Identities=23% Similarity=0.316 Sum_probs=161.7
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCC
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p 522 (1099)
..++++|+++.|.+ ..|+++||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++ .+++|+||++
T Consensus 339 ~~l~~~~ls~~~~~--~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------~~i~y~~Q~~ 409 (590)
T PRK13409 339 TLVEYPDLTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------LKISYKPQYI 409 (590)
T ss_pred eEEEEcceEEEECC--EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------eeEEEecccc
Confidence 46999999999853 35999999999999999999999999999999999999999999886 2699999998
Q ss_pred CC-CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001329 523 YT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1099)
Q Consensus 523 ~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1099)
.. +..|++||+.++.... .....+.++++.+++.+..++.|. +|||||||||+|||||+.+|+++|
T Consensus 410 ~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~--------~LSGGe~QRvaiAraL~~~p~llL 476 (590)
T PRK13409 410 KPDYDGTVEDLLRSITDDL-----GSSYYKSEIIKPLQLERLLDKNVK--------DLSGGELQRVAIAACLSRDADLYL 476 (590)
T ss_pred cCCCCCcHHHHHHHHhhhc-----ChHHHHHHHHHHCCCHHHHhCCcc--------cCCHHHHHHHHHHHHHhcCCCEEE
Confidence 64 4579999998753211 123356789999999988888774 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001329 602 LDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1099)
Q Consensus 602 LDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1099)
|||||++||+.+...+.+.+++ .|.|+|+||||+..+. .+|++++|++
T Consensus 477 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~ 529 (590)
T PRK13409 477 LDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG 529 (590)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 9999999999999999888765 3899999999999875 6999999986
No 345
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=8.6e-32 Score=354.99 Aligned_cols=207 Identities=23% Similarity=0.334 Sum_probs=171.4
Q ss_pred cEEEEeeEEEcC---CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc---CCccEEEeCCCC--ccccccE
Q 001329 444 YIEFSGVKVVTP---TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG--SDLNKEI 515 (1099)
Q Consensus 444 ~I~~~~v~~~y~---~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~---p~~G~I~i~g~~--~~~r~~i 515 (1099)
.++++||++.|+ +++++|+|||+++++||+++|+||||||||||+++|+|+.+ |++|+|.+||.+ .++++.+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 479999999885 24679999999999999999999999999999999999998 789999999975 3567889
Q ss_pred EEEecCCC-CCcccHHHHhccCCCCCC---cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001329 516 FYVPQRPY-TAVGTLRDQLIYPLTSDQ---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1099)
Q Consensus 516 ~~v~Q~p~-l~~~Ti~eni~~~~~~~~---~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1099)
+||+|++. ++..|++||+.+....+. ......++++.++++.+++.+..++.+. +.+.+||||||||++|||
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~----~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG----VPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeC----CCCCCCCHHHhhHHHHHH
Confidence 99999875 456799999997532111 1111223567889999999887666542 123479999999999999
Q ss_pred HHccCCC-EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH--HhcCEEEEEeCCCceE
Q 001329 592 LFYHKPK-FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV--AFHDVVLSLDGEGEWR 654 (1099)
Q Consensus 592 AL~~~P~-iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i--~~~D~Il~l~~~g~~~ 654 (1099)
||+.+|+ +|+|||||||||+.+...+++.+++ .|+|+|+++|+++.. ..+|++++|+++|...
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv 983 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV 983 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE
Confidence 9999997 9999999999999999999988765 489999999999863 6789999998765443
No 346
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.4e-32 Score=331.92 Aligned_cols=194 Identities=20% Similarity=0.247 Sum_probs=159.0
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c------cccccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~~r~~i 515 (1099)
..|+++|++. .+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ . ..++.+
T Consensus 267 ~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 267 PVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred ceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 4699999983 26999999999999999999999999999999999999999999999853 1 124579
Q ss_pred EEEecCCC---CC-cccHHHHhccCCCC---CCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHH
Q 001329 516 FYVPQRPY---TA-VGTLRDQLIYPLTS---DQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1099)
Q Consensus 516 ~~v~Q~p~---l~-~~Ti~eni~~~~~~---~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1099)
+|+||++. ++ ..|+.+|+...... ........++++.++++.+++. +..++.+ .+||||||||+
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~kqrl 412 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA--------RTLSGGNQQKV 412 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc--------ccCCcHHHHHH
Confidence 99999862 44 45999998532100 0000111234577889999996 5666665 38999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 588 aIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|+|+||||++.+. .||++++|+++
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G 479 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQG 479 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999888764 4899999999999885 68999999864
No 347
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-32 Score=335.09 Aligned_cols=193 Identities=22% Similarity=0.280 Sum_probs=157.8
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCC
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~ 523 (1099)
+|+++||++.|. ++++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|. ..++|++|++.
T Consensus 1 ~i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-----~~i~~~~q~~~ 74 (638)
T PRK10636 1 MIVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-----WQLAWVNQETP 74 (638)
T ss_pred CEEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----CEEEEEecCCC
Confidence 378999999994 567999999999999999999999999999999999999999999999884 25899999764
Q ss_pred CCcccHHHHhccCCC---------------C--------C----CcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCC
Q 001329 524 TAVGTLRDQLIYPLT---------------S--------D----QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINW 575 (1099)
Q Consensus 524 l~~~Ti~eni~~~~~---------------~--------~----~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~ 575 (1099)
.+..|+.+.+..... . . .......+.++.++++.+|+. +..++.+
T Consensus 75 ~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~------- 147 (638)
T PRK10636 75 ALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV------- 147 (638)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch-------
Confidence 443454443321100 0 0 000011245678889999996 4556544
Q ss_pred CCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
.+|||||||||+|||||+.+|++|||||||++||+.+..++.+.+++.+.|+|+||||...+. .||+|++|+++
T Consensus 148 -~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G 222 (638)
T PRK10636 148 -SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQ 222 (638)
T ss_pred -hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 489999999999999999999999999999999999999999999988889999999999875 68999999864
No 348
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-33 Score=284.91 Aligned_cols=198 Identities=24% Similarity=0.349 Sum_probs=173.2
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
+|+++||++.|. ++.+++|+|++|++|.+++|+||||+|||||+.++++|.++++|+|.++|.+ +++.+++++
T Consensus 1 MI~i~nv~K~y~-~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSYG-TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhhC-CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 478999999994 6789999999999999999999999999999999999999999999999976 456788999
Q ss_pred EecCCCCC-cccHHHHhccCCCCC--CcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 518 VPQRPYTA-VGTLRDQLIYPLTSD--QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 518 v~Q~p~l~-~~Ti~eni~~~~~~~--~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
+-|+..+- .-||+|-+.||.-.. +....++...+.++++.++|.++.+++-. +||||||||.-||+.++
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd--------~LSGGQrQRAfIAMVla 151 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD--------ELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHH--------hcccchhhhhhhheeee
Confidence 99988754 469999999876432 22233556678899999999999999863 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++.+.++||||.++||.....++++.++ +.|+|+++|-||.+.+. ++|+|+-|+++
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G 212 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNG 212 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCC
Confidence 9999999999999999988888877765 46999999999999986 67999999864
No 349
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=267.75 Aligned_cols=195 Identities=21% Similarity=0.331 Sum_probs=166.6
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCC---ccEEEeCCCC----ccccccEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVG----SDLNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g~~----~~~r~~i~ 516 (1099)
++.++||+..-+ +.-.|-++||+|.+||++-|+||||||||||+.-+.|.+.++ +|++.+++++ ..-++++|
T Consensus 2 ~l~l~nvsl~l~-g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 2 MLCLKNVSLRLP-GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred ceeeeeeeecCC-CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 578899998764 567899999999999999999999999999999999999885 8999999976 23468999
Q ss_pred EEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
++|||+++|+ -+|.+|+.|..+..-.. ...+..+..++++.|+..+.++.|. +||||||-||++-|+|+.
T Consensus 81 iLFQD~lLFphlsVg~Nl~fAlp~~~KG-~aRr~~a~aAL~~~gL~g~f~~dP~--------tlSGGQrARvaL~R~Lla 151 (213)
T COG4136 81 ILFQDALLFPHLSVGQNLLFALPATLKG-NARRNAANAALERSGLDGAFHQDPA--------TLSGGQRARVALLRALLA 151 (213)
T ss_pred eeecccccccccccccceEEecCccccc-HHHHhhHHHHHHHhccchhhhcChh--------hcCcchHHHHHHHHHHHh
Confidence 9999999986 59999999976643211 2345567789999999999999884 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHH----HHHHHhcCcEEEEEccChhHHHhcCEEEEEe
Q 001329 596 KPKFAILDECTSAVTTDMEERF----CAKVRAMGTSCITISHRPALVAFHDVVLSLD 648 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l----~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1099)
.|+.++||||+|.||..-+.+. ...+++.|.-+|+||||...+..-.+++.+.
T Consensus 152 ~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~~ 208 (213)
T COG4136 152 QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEMA 208 (213)
T ss_pred CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeeee
Confidence 9999999999999999876664 4456677999999999999888667777663
No 350
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.3e-32 Score=290.72 Aligned_cols=200 Identities=27% Similarity=0.395 Sum_probs=166.3
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------cccccc
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKE 514 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~ 514 (1099)
...|+++||++.| +++++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+-|.. .++|++
T Consensus 29 ~~li~l~~v~v~r-~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 29 EPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred cceEEecceEEEE-CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 4569999999998 57899999999999999999999999999999999999999999999988753 468999
Q ss_pred EEEEecC---CCCCcccHHHHhccCCCCC----C-cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH
Q 001329 515 IFYVPQR---PYTAVGTLRDQLIYPLTSD----Q-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1099)
Q Consensus 515 i~~v~Q~---p~l~~~Ti~eni~~~~~~~----~-~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1099)
||+|.-. .+....+++|-+.-+.... . ...+...+++..+++.+|+.+..++.- .+||-|||||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~--------~~LS~Ge~rr 179 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF--------GSLSQGEQRR 179 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch--------hhcCHhHHHH
Confidence 9999843 3344567888776432211 1 112234456778999999999888754 3899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-----CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM-----GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 587 laIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~-----g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+-|||||+++|++|||||||++||....+.+.+.+.+. +.++|+|||..+.+. +.++++.++++
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g 249 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEG 249 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCC
Confidence 99999999999999999999999999999988877652 678999999999886 55999998865
No 351
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=6.2e-32 Score=333.49 Aligned_cols=189 Identities=21% Similarity=0.319 Sum_probs=161.1
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecC
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~ 521 (1099)
...|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.+++. .++||++|+
T Consensus 310 ~~~l~~~~l~~~y~-~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----~~igy~~Q~ 383 (638)
T PRK10636 310 NPLLKMEKVSAGYG-DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----IKLGYFAQH 383 (638)
T ss_pred CceEEEEeeEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----EEEEEecCc
Confidence 34799999999995 467999999999999999999999999999999999999999999999641 369999998
Q ss_pred C--CCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001329 522 P--YTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1099)
Q Consensus 522 p--~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1099)
+ .+. ..|+.+++..... ....+++.++++.+++. +..++.+ .+|||||||||+|||+++.+|
T Consensus 384 ~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~L~~~~l~~~~~~~~~--------~~LSgGekqRl~La~~l~~~p 449 (638)
T PRK10636 384 QLEFLRADESPLQHLARLAP------QELEQKLRDYLGGFGFQGDKVTEET--------RRFSGGEKARLVLALIVWQRP 449 (638)
T ss_pred chhhCCccchHHHHHHHhCc------hhhHHHHHHHHHHcCCChhHhcCch--------hhCCHHHHHHHHHHHHHhcCC
Confidence 5 233 3478887642111 12356788899999996 4566655 389999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 598 ~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++|||||||++||+.+...+.+.+++.+.|+|+||||+..+. .||+|++|+++
T Consensus 450 ~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G 503 (638)
T PRK10636 450 NLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDG 503 (638)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999987779999999999885 68999999854
No 352
>PLN03073 ABC transporter F family; Provisional
Probab=99.98 E-value=5.2e-32 Score=335.67 Aligned_cols=192 Identities=20% Similarity=0.297 Sum_probs=159.4
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCC
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p 522 (1099)
..++++||++.|++++++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.+++ +.+|+|++|++
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----~~~igyv~Q~~ 581 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----KVRMAVFSQHH 581 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----ceeEEEEeccc
Confidence 5799999999996556799999999999999999999999999999999999999999999876 34799999987
Q ss_pred CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001329 523 YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1099)
Q Consensus 523 ~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1099)
. ...++.+|........ .....++++.++++.+++.+ ..++.| .+||||||||++||||++.+|++||
T Consensus 582 ~-~~l~~~~~~~~~~~~~--~~~~~~~~i~~~L~~~gl~~~~~~~~~--------~~LSgGqkqRvaLAraL~~~p~lLL 650 (718)
T PLN03073 582 V-DGLDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPM--------YTLSGGQKSRVAFAKITFKKPHILL 650 (718)
T ss_pred c-ccCCcchhHHHHHHHh--cCCCCHHHHHHHHHHCCCChHHhcCCc--------cccCHHHHHHHHHHHHHhcCCCEEE
Confidence 3 2234444432110000 01134567889999999974 556655 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 602 LDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 602 LDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||||++||+.+...+.+.+.+.+.|+|+||||+..+. .||++++|+++
T Consensus 651 LDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G 700 (718)
T PLN03073 651 LDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEG 700 (718)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 99999999999999999988875569999999999886 58999999864
No 353
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.98 E-value=1.8e-32 Score=326.61 Aligned_cols=255 Identities=24% Similarity=0.317 Sum_probs=191.9
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCC
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~ 523 (1099)
.|+++|+++.| +++++++|+||++.+|+++||||+||||||||+|+|+|...|++|+|..++. -+++|++|++.
T Consensus 3 ~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----~~v~~l~Q~~~ 76 (530)
T COG0488 3 MITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----LRVGYLSQEPP 76 (530)
T ss_pred eEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----ceEEEeCCCCC
Confidence 58999999999 5789999999999999999999999999999999999999999999998762 36999999998
Q ss_pred CCc-ccHHHHhccCCCCCCcC----C--------------------------cCCHHHHHHHHHhcCChhHHhcCCCCcc
Q 001329 524 TAV-GTLRDQLIYPLTSDQEV----E--------------------------PLTHGGMVELLKNVDLEYLLDRYPPEKE 572 (1099)
Q Consensus 524 l~~-~Ti~eni~~~~~~~~~~----~--------------------------~~~~~~i~~~l~~~~l~~~~~~~p~~~~ 572 (1099)
... .|+.|.+..+....... + -..+.++..++..+|+.+. ++ |
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~-~---- 150 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DR-P---- 150 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cC-c----
Confidence 875 49999887654211000 0 0012344445555555443 22 1
Q ss_pred cCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001329 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1099)
Q Consensus 573 ~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1099)
..+||||||.|+++||||+.+||+|+|||||++||.++..++.+.|++...|+|+||||..++. .|++|+.++.+
T Consensus 151 ---~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g- 226 (530)
T COG0488 151 ---VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRG- 226 (530)
T ss_pred ---hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCC-
Confidence 2589999999999999999999999999999999999999999999876339999999999886 58999999875
Q ss_pred ceEEeecCCCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHh
Q 001329 652 EWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIA 714 (1099)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~ 714 (1099)
......++++.+...+.........+..++...+...+.|.......+.+..+.....+++-+
T Consensus 227 ~l~~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k 289 (530)
T COG0488 227 KLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEK 289 (530)
T ss_pred ceeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 455666677777766655554444444444445555566655544444433344555555543
No 354
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.1e-31 Score=279.71 Aligned_cols=142 Identities=23% Similarity=0.302 Sum_probs=126.9
Q ss_pred EeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcc
Q 001329 448 SGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVG 527 (1099)
Q Consensus 448 ~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~ 527 (1099)
.||++.|. ++++++| +|++++||+++|+||||||||||+|+|+|+++|++|+|.++|. .++|++|++.
T Consensus 4 ~~l~~~~~-~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------~i~~~~q~~~---- 71 (177)
T cd03222 4 PDCVKRYG-VFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------TPVYKPQYID---- 71 (177)
T ss_pred CCeEEEEC-CEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------EEEEEcccCC----
Confidence 57888884 4678888 4999999999999999999999999999999999999999984 4889888642
Q ss_pred cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001329 528 TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1099)
Q Consensus 528 Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTS 607 (1099)
||||||||++||||++.+|+++||||||+
T Consensus 72 ---------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 72 ---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 89999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh---c-CcEEEEEccChhHHH-hcCEEEEEeCCCc
Q 001329 608 AVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDGEGE 652 (1099)
Q Consensus 608 aLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i~-~~D~Il~l~~~g~ 652 (1099)
+||+.+++.+.+.+++ . +.|+|++||+++.+. .+|++++++++.+
T Consensus 101 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 101 YLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCc
Confidence 9999999998887754 3 489999999999887 6999999987643
No 355
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=99.97 E-value=2.4e-29 Score=281.35 Aligned_cols=275 Identities=28% Similarity=0.484 Sum_probs=248.1
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS 164 (1099)
Q Consensus 85 ~~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 164 (1099)
++.+++|++.+.|..++..++.+++++++.++++.+++.++.+.+.++++++.++.+.|++.++.+++++++.+++++..
T Consensus 7 lr~f~~L~~~~~~~~~~~~~~ll~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l~~~~ 86 (281)
T PF06472_consen 7 LRRFWRLARIYWPSERWKAWLLLLVLLLLLLARVYLSVRINFWNGDFYNALQQKDLQAFWRLLLLFLLLAIASALLNSIL 86 (281)
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777778888899999999999999999999999999999999999888888888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1099)
Q Consensus 165 ~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~ 244 (1099)
+|+.+.++.+||+++|++++++|+++..+|.+...+++++||||||++|++.+++...+++.+++.++++.+.|++.++.
T Consensus 87 ~yl~~~L~l~wR~~Lt~~~~~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~ 166 (281)
T PF06472_consen 87 KYLRQRLALRWREWLTRHLHDRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWS 166 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999888877
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001329 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1099)
Q Consensus 245 ~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1099)
...+...+.+++++++..+++++++|++.+++.++|+.||++|..+.++++|+|+|++|+||+.|+.+++++|+++.+++
T Consensus 167 ~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~ 246 (281)
T PF06472_consen 167 ISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNW 246 (281)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 65555555777888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001329 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF 359 (1099)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 359 (1099)
....+.....++++.++..+++..++.+++.+|+|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~F 281 (281)
T PF06472_consen 247 RRLIRRRLRLGFFTNFYVKYLSSILPYLVVAPPYF 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 98888888889888887567777777777766653
No 356
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.97 E-value=1.4e-31 Score=287.85 Aligned_cols=172 Identities=17% Similarity=0.117 Sum_probs=139.0
Q ss_pred eeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEE-eCCCCccccccEEEEecCCCCCc-ccHHHHhccCC
Q 001329 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA-KPGVGSDLNKEIFYVPQRPYTAV-GTLRDQLIYPL 537 (1099)
Q Consensus 460 vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~-i~g~~~~~r~~i~~v~Q~p~l~~-~Ti~eni~~~~ 537 (1099)
+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|.. + .+.|++.++. .|+.||+.++.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~------~-~~~~~~~l~~~ltv~enl~~~~ 74 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDA------L-PLGANSFILPGLTGEENARMMA 74 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCce------e-ccccccccCCcCcHHHHHHHHH
Confidence 79999999999999999999999999999999999999999997 77632 1 2345666665 59999998753
Q ss_pred CCCCcCCcCCHHHH-HHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001329 538 TSDQEVEPLTHGGM-VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1099)
Q Consensus 538 ~~~~~~~~~~~~~i-~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~ 616 (1099)
.... ...++. ..+.+..++.+..++.+ .+||||||||++||||++.+|+++||||||+++|+.++..
T Consensus 75 ~~~~----~~~~~~~~~~~~~~~l~~~~~~~~--------~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~ 142 (213)
T PRK15177 75 SLYG----LDGDEFSHFCYQLTQLEQCYTDRV--------SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLR 142 (213)
T ss_pred HHcC----CCHHHHHHHHHHHhChhHHhhchH--------hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHH
Confidence 3211 122222 23345567776666554 3799999999999999999999999999999999999999
Q ss_pred HHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 617 FCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 617 l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+.+.+.+ .+.|+|++||+++.+. .||++++|+++
T Consensus 143 ~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G 179 (213)
T PRK15177 143 MQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHG 179 (213)
T ss_pred HHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECC
Confidence 8886643 4678999999999885 79999999864
No 357
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=5.6e-31 Score=325.42 Aligned_cols=191 Identities=23% Similarity=0.299 Sum_probs=154.3
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCC
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~ 523 (1099)
.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|. ..+++++|++.
T Consensus 3 ~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-----~~~~~l~q~~~ 76 (635)
T PRK11147 3 LISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-----LIVARLQQDPP 76 (635)
T ss_pred EEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-----CEEEEeccCCC
Confidence 589999999995 467999999999999999999999999999999999999999999999873 24788998764
Q ss_pred C-CcccHHHHhccCCC-------------------C-C--------------CcCCcCCHHHHHHHHHhcCChhHHhcCC
Q 001329 524 T-AVGTLRDQLIYPLT-------------------S-D--------------QEVEPLTHGGMVELLKNVDLEYLLDRYP 568 (1099)
Q Consensus 524 l-~~~Ti~eni~~~~~-------------------~-~--------------~~~~~~~~~~i~~~l~~~~l~~~~~~~p 568 (1099)
. ..+++.+++..+.. . . .......+.++.++++.+|+.. ++.+
T Consensus 77 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~ 154 (635)
T PRK11147 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--DAAL 154 (635)
T ss_pred CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--CCch
Confidence 3 23466554321100 0 0 0000012356777888888752 3333
Q ss_pred CCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEE
Q 001329 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSL 647 (1099)
Q Consensus 569 ~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l 647 (1099)
.+|||||||||+|||||+.+|++|||||||++||+.+..++.+.+++.+.|+|+||||...+. .||+|++|
T Consensus 155 --------~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L 226 (635)
T PRK11147 155 --------SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDL 226 (635)
T ss_pred --------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 489999999999999999999999999999999999999999999988789999999999885 58999999
Q ss_pred eCC
Q 001329 648 DGE 650 (1099)
Q Consensus 648 ~~~ 650 (1099)
+++
T Consensus 227 ~~G 229 (635)
T PRK11147 227 DRG 229 (635)
T ss_pred ECC
Confidence 864
No 358
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=4.9e-31 Score=274.62 Aligned_cols=150 Identities=23% Similarity=0.350 Sum_probs=127.7
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCcc-ccccEEEEecCCCCCcccHHHHhccC
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD-LNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~-~r~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1099)
+++|+|+||++++||+++|+||||||||||+|+|+ +++|++.++|.... .+..++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q---------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ---------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH----------------
Confidence 57999999999999999999999999999999995 37899999875322 2335777776
Q ss_pred CCCCCcCCcCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHH
Q 001329 537 LTSDQEVEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHK--PKFAILDECTSAVTTDM 613 (1099)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~--P~iliLDEpTSaLD~~~ 613 (1099)
.++++.+++.+. .++.+ .+||||||||++||||++.+ |+++||||||++||+.+
T Consensus 68 ---------------~~~l~~~~L~~~~~~~~~--------~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 ---------------LQFLIDVGLGYLTLGQKL--------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred ---------------HHHHHHcCCCccccCCCc--------CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 246777787643 44433 48999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 614 EERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 614 ~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
.+.+.+.+++ .|.|+|+|||+++.+..+|++++|+++
T Consensus 125 ~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g 164 (176)
T cd03238 125 INQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPG 164 (176)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCC
Confidence 9999887765 589999999999999899999999764
No 359
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=307.51 Aligned_cols=321 Identities=18% Similarity=0.222 Sum_probs=257.4
Q ss_pred cccCCCceeecCCCeeEehhhHHHHh----hHHHHHHHhcCCcchhHHhhcCHHHHHHHHHHHHhhhhhHHHHhhHHHHH
Q 001329 746 FKVLVPTVFDKQGAQLLAVAFLVVSR----TWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHL 821 (1099)
Q Consensus 746 Cri~iP~l~s~e~g~lv~c~~~lv~R----t~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~~~s~~n~~l~~~ 821 (1099)
..+.-|-|.++........+..+++= +...++++.-+|.+-.+|-++|...|...+..+..++.-.-.++..-.|+
T Consensus 30 w~i~r~yw~~~~~~~~~~l~~~i~~~~l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L 109 (604)
T COG4178 30 WMIARAYWASPVRKRAWLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWL 109 (604)
T ss_pred HHHhhhhccCccchHHHHHHHHHHHHHHHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544443344433333 44456677788999999999999999999988888777776788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceEEecCC--CCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHh
Q 001329 822 TARLALGWRIRMTQHLLKSYLRKNSFYKVFNMS--SKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKAL 899 (1099)
Q Consensus 822 ~~~l~l~~R~rLt~~~~~~Yl~~~~yY~~~~ld--~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~ 899 (1099)
+.++.++||++||+|++++||+++.||++.+.+ +-+|||||||++||..||++..+|..+++++++.++-|+.-|+.+
T Consensus 110 ~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~l 189 (604)
T COG4178 110 NQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSL 189 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999997 778999999999999999999999999999999999999999987
Q ss_pred hCc----------chH----HHHHHHHHHHHHHHhhcCCcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHH
Q 001329 900 TGQ----------RGV----AILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKA 965 (1099)
Q Consensus 900 ~g~----------~g~----~~~~~~~~~~~~~lr~~~P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~ 965 (1099)
.|. ..| ..++.|.+++..+.-.+.||+.+|..+.+++||+|||.|.|+.+|||+||||+|++.||.
T Consensus 190 sg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~ 269 (604)
T COG4178 190 SGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERR 269 (604)
T ss_pred cCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHH
Confidence 662 223 345567777777766999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccchhhhhhhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhh
Q 001329 966 MIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLA 1045 (1099)
Q Consensus 966 ~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 1045 (1099)
.+++.|...++-.+.+..+-..+..+.+-+ -++..++.|.++++.+++.. -+.++++++...... ...|
T Consensus 270 ~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy-~~~s~v~P~li~ap~~f~g~------i~~G~lmqa~~aF~~----v~ss 338 (604)
T COG4178 270 RLDDRFDAVLGNWRRLVRAQIRLTWFQLGY-GWLSVVLPILIAAPRYFSGQ------ITFGGLMQAVGAFGQ----VHSS 338 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhh-hHHHHHHHHHhccHhhhcCc------ChHHHHHHHHHHHHH----HHHH
Confidence 999999999997777776666665555533 22222333333333333221 224566665555555 5678
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHhC
Q 001329 1046 FGDILELHRKFVELSGGINRIFELEELLDAAQ 1077 (1099)
Q Consensus 1046 ~grl~~~~k~~~~laG~t~Rv~el~~~l~~~~ 1077 (1099)
++..+..|..++++..-..||+++.+.++..+
T Consensus 339 lswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~ 370 (604)
T COG4178 339 LSWFIDNYDAIADWRATLLRLAEFRQALEAAQ 370 (604)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999998665
No 360
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.97 E-value=1.5e-31 Score=329.38 Aligned_cols=192 Identities=22% Similarity=0.298 Sum_probs=158.9
Q ss_pred CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCC---ccEEEeCCCC---ccccccEEEEecCCCCCc-ccH
Q 001329 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVG---SDLNKEIFYVPQRPYTAV-GTL 529 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g~~---~~~r~~i~~v~Q~p~l~~-~Ti 529 (1099)
++++|+|+|+++++||.++|+||||||||||+++|+|..+|. +|+|.++|.+ ..+++.++||+|++.++. .||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999999885 8999999975 346778999999998775 699
Q ss_pred HHHhccCCCCCCc---CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCC
Q 001329 530 RDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606 (1099)
Q Consensus 530 ~eni~~~~~~~~~---~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpT 606 (1099)
+|||.++...+.. .....++++.++++.+|+.+..+..+.+. ..+..||||||||++|||+|+.+|++++|||||
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~--~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVP--GRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCC--CCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 9999886432211 11123456888999999987655543210 013579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHh---cCcEEEEEccChh--HHHhcCEEEEEeCC
Q 001329 607 SAVTTDMEERFCAKVRA---MGTSCITISHRPA--LVAFHDVVLSLDGE 650 (1099)
Q Consensus 607 SaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~--~i~~~D~Il~l~~~ 650 (1099)
||||+.+...+++.+++ .|+|+|+++|+++ ....+|++++|+++
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G 243 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEG 243 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCC
Confidence 99999999999888765 4899999999985 45789999999853
No 361
>PRK12369 putative transporter; Reviewed
Probab=99.97 E-value=9.9e-30 Score=287.81 Aligned_cols=283 Identities=16% Similarity=0.114 Sum_probs=252.5
Q ss_pred hhHHHHhhHHHHHHHhcCCcchhHHhhc-------CHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001329 765 AFLVVSRTWISDRIASLNGTTVKYVLEQ-------DKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837 (1099)
Q Consensus 765 ~~~lv~Rt~ls~~va~l~g~~v~~iv~~-------~~~~F~~~l~~~~~~~~~~s~~n~~l~~~~~~l~l~~R~rLt~~~ 837 (1099)
-++.++-+.+++++...+++.-.+|-++ |.++|...+..+..+++.+..++..-.|++++|+++||+.||+|+
T Consensus 23 i~l~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~ 102 (326)
T PRK12369 23 LLSLWYQVSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSY 102 (326)
T ss_pred HHHHHHHHHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788999999999999999999996 799999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhh-----------CcchHH
Q 001329 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALT-----------GQRGVA 906 (1099)
Q Consensus 838 ~~~Yl~~~~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~-----------g~~g~~ 906 (1099)
++.|+. .|+.+|||||||+|||+.||+...+|+..+++++++++.|+.-|++.- ++..+.
T Consensus 103 l~~wl~---------~~~~iDNPDQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~ 173 (326)
T PRK12369 103 LKFWRN---------KRDNIEGSSQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVW 173 (326)
T ss_pred HHHHhc---------CCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHH
Confidence 999996 467799999999999999999999999999999999999999999943 344456
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 907 ILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKW 986 (1099)
Q Consensus 907 ~~~~~~~~~~~~lr~~~P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~ 986 (1099)
..+.|.++++.+...+.+|+.++..++|+.|++||+.|.|..+|+|. | .|+..+++.|.++.+..+.+++...
T Consensus 174 ~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~----~E~~~l~~~f~~v~~n~~~~~~~~~ 246 (326)
T PRK12369 174 IALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y----AKPETLIELFTGLRFNYFRLFLHYG 246 (326)
T ss_pred HHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999 5 8999999999999999999999999
Q ss_pred HHHHhHHHHHhhccchhhhhhhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcChhhHH
Q 001329 987 LFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRI 1066 (1099)
Q Consensus 987 ~~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~~k~~~~laG~t~Rv 1066 (1099)
+.+++.+.. .|++..+++.++++..++.... .|++++.-....+ ..+|++-++.+|++++|+++++.|+
T Consensus 247 ~l~~~~~~y-~~~~~i~p~li~aP~y~sg~i~------lG~l~Q~~~AF~~----v~~als~~v~~y~~la~~~A~~~RL 315 (326)
T PRK12369 247 YFNIWLISF-SQMMVIVPYLIMAPGLFAGVIT------LGVLMQISNAFSQ----VRSSFSVFIRNWTTITELRSIYKRL 315 (326)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999965 8899999998877766653332 3456655544444 4569999999999999999999999
Q ss_pred HHHHHHHH
Q 001329 1067 FELEELLD 1074 (1099)
Q Consensus 1067 ~el~~~l~ 1074 (1099)
.++.+.++
T Consensus 316 ~~f~~~l~ 323 (326)
T PRK12369 316 KEFEKNIE 323 (326)
T ss_pred HHHHHHhh
Confidence 99999886
No 362
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.5e-31 Score=273.39 Aligned_cols=275 Identities=19% Similarity=0.277 Sum_probs=209.4
Q ss_pred EEEEeeEEEcCC--C-CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc----CCccEEEeCCCC------cc-
Q 001329 445 IEFSGVKVVTPT--G-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----LVSGHIAKPGVG------SD- 510 (1099)
Q Consensus 445 I~~~~v~~~y~~--~-~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~----p~~G~I~i~g~~------~~- 510 (1099)
+.++|++..+.. + .++++++|+++.+||+-|+||+||||||-+.|+|+|..+ .+.-+..+++.+ .+
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 456677665432 2 479999999999999999999999999999999999864 344555566654 11
Q ss_pred ---ccccEEEEecCCCC---CcccHHHHhccCCCCCCc------CCcCCHHHHHHHHHhcCChh---HHhcCCCCcccCC
Q 001329 511 ---LNKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQE------VEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINW 575 (1099)
Q Consensus 511 ---~r~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~~~------~~~~~~~~i~~~l~~~~l~~---~~~~~p~~~~~~~ 575 (1099)
+.+.|+++||+|.. ++.+|..++.-..+.... .-...+.+..++|.++|+.+ ....||.
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~------ 157 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPY------ 157 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcc------
Confidence 23579999999964 345777766543322111 11245678899999999964 4667885
Q ss_pred CCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHh-cCEEEEEeCC
Q 001329 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAF-HDVVLSLDGE 650 (1099)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1099)
+|--||-|+|+||.|++.+|++||.||||+++|+.++.++++++.+ .|.|+++++||+..+.. ||+|-
T Consensus 158 --ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~----- 230 (330)
T COG4170 158 --ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKIN----- 230 (330)
T ss_pred --hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheE-----
Confidence 7999999999999999999999999999999999999999998864 48999999999998854 55543
Q ss_pred CceEEeecCCCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCCCCCCC----CCCC
Q 001329 651 GEWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN----VPLP 726 (1099)
Q Consensus 651 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~----~~~~ 726 (1099)
|+|.|+.+|++++++++. .|.||||++|+.+.|..... .++.
T Consensus 231 ---------------------------------VlYCGQ~~ESa~~e~l~~-~PhHPYTqALi~a~PDF~~~lp~KsrL~ 276 (330)
T COG4170 231 ---------------------------------VLYCGQTVESAPSEELVT-MPHHPYTQALIRAIPDFGSALPHKSRLN 276 (330)
T ss_pred ---------------------------------EEEecccccccchhHHhc-CCCCchHHHHHHhCccccccCcchhhhc
Confidence 778889999999999887 58999999999999985332 4567
Q ss_pred CCCCCCCCCCCchh---------hhhcccccCCCceeecCCCeeEehhhHH
Q 001329 727 VFPQLKSAPRILPL---------RVADMFKVLVPTVFDKQGAQLLAVAFLV 768 (1099)
Q Consensus 727 ~~~~~~~~~~~~p~---------Ra~~lCri~iP~l~s~e~g~lv~c~~~l 768 (1099)
.+||..|.....|- .+++.|-+ .|...- -..|..+|-+=|
T Consensus 277 tL~G~iP~Le~lPiGCRLGPRCP~AQk~Cie-~P~~~~-~K~H~FsCH~Pl 325 (330)
T COG4170 277 TLPGAIPLLEQLPIGCRLGPRCPYAQRECIE-TPRLTG-AKNHLFACHFPL 325 (330)
T ss_pred cCCCcCchhhhCCcccccCCCCchhhhhhhc-chhhhh-hhcceeeecccc
Confidence 88999998887772 36666643 455432 234666665433
No 363
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=6.1e-31 Score=320.69 Aligned_cols=184 Identities=25% Similarity=0.287 Sum_probs=154.4
Q ss_pred eeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEE-----------eCCCC-c----c--
Q 001329 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA-----------KPGVG-S----D-- 510 (1099)
Q Consensus 449 ~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~-----------i~g~~-~----~-- 510 (1099)
+++++|..+..+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|.+ . .
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 47778864456999999 9999999999999999999999999999999999997 77764 1 1
Q ss_pred -ccccEEE----EecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001329 511 -LNKEIFY----VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1099)
Q Consensus 511 -~r~~i~~----v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1099)
.+.++++ ++|.|.++.+|++|++... ...+++.++++.+++.+..++.+ .+|||||||
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~--------~~LSgGe~q 219 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDI--------SELSGGELQ 219 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHH
Confidence 1123444 4455666678999998642 13457888999999988777766 389999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 586 RlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|++|||||+.+|+++||||||++||+....++.+.+++. |.|+|+||||++.+. .+|+|++++++
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999998887654 999999999999885 58999999764
No 364
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=1.6e-30 Score=342.00 Aligned_cols=208 Identities=23% Similarity=0.279 Sum_probs=168.2
Q ss_pred cEEEEeeEEEcC------------CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC--CccEEEeCCCC-
Q 001329 444 YIEFSGVKVVTP------------TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVG- 508 (1099)
Q Consensus 444 ~I~~~~v~~~y~------------~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p--~~G~I~i~g~~- 508 (1099)
.+.++||++..+ +++++|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 589999998753 123799999999999999999999999999999999999874 78999999975
Q ss_pred --ccccccEEEEecCCCCC-cccHHHHhccCCCCCC--c-CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChH
Q 001329 509 --SDLNKEIFYVPQRPYTA-VGTLRDQLIYPLTSDQ--E-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582 (1099)
Q Consensus 509 --~~~r~~i~~v~Q~p~l~-~~Ti~eni~~~~~~~~--~-~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGG 582 (1099)
...++.+|||+|++.++ ..|++||+.++..... . ......+.+.++++.++|.+..++.+.+ .....||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~---~~~~~LSgG 1023 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGL---PGVTGLSTE 1023 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCC---CCCCCcCHH
Confidence 23567799999998655 4699999987532110 0 0111234578899999998877665421 112479999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhH--HHhcCEEEEEeCCCceE
Q 001329 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGEGEWR 654 (1099)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~--i~~~D~Il~l~~~g~~~ 654 (1099)
||||++|||+|+.+|++|+|||||||||+.+...+++.+++ .|+|+|+++|+++. ...+|++++|+++|...
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v 1100 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1100 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE
Confidence 99999999999999999999999999999999999888765 48999999999984 46789999998755433
No 365
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.8e-30 Score=263.21 Aligned_cols=144 Identities=34% Similarity=0.567 Sum_probs=128.9
Q ss_pred EEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEec
Q 001329 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQ 520 (1099)
Q Consensus 447 ~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q 520 (1099)
++|+++.|++ +++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ .++++.++|+||
T Consensus 2 ~~~~~~~~~~-~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 2 IENLSFRYGG-RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred eEEEEEEeCC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 6789998864 479999999999999999999999999999999999999999999999853 123456777777
Q ss_pred CCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001329 521 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1099)
Q Consensus 521 ~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1099)
|||||+||++||||++.+|+++
T Consensus 81 ----------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 81 ----------------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 8999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEEeC
Q 001329 601 ILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDG 649 (1099)
Q Consensus 601 iLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l~~ 649 (1099)
||||||++||+.+...+.+.+++ .++|+|++||+++.+.. +|+++++++
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~ 155 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKD 155 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999887764 36899999999999876 599999975
No 366
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-29 Score=263.84 Aligned_cols=200 Identities=28% Similarity=0.371 Sum_probs=166.6
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCc--CcCCccEEEeCCCC-------cccccc
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-------SDLNKE 514 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl--~~p~~G~I~i~g~~-------~~~r~~ 514 (1099)
.++++||++.-.+.+.+|++|||+|++||+.+|+||||||||||.++|+|. |++++|+|.++|.| +..|..
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G 82 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG 82 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence 589999998764335899999999999999999999999999999999996 58899999999986 234678
Q ss_pred EEEEecCCCCCcc-cHHHHhccCCCCCCcC---CcCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHH
Q 001329 515 IFYVPQRPYTAVG-TLRDQLIYPLTSDQEV---EPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGM 589 (1099)
Q Consensus 515 i~~v~Q~p~l~~~-Ti~eni~~~~~~~~~~---~~~~~~~i~~~l~~~~l~~-~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1099)
|.+-+|.|.=++| |+.+-+.......... .....+++.++++.+++++ +++|... ..+|||||+|..|
T Consensus 83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN-------~GFSGGEkKR~Ei 155 (251)
T COG0396 83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN-------EGFSGGEKKRNEI 155 (251)
T ss_pred CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC-------CCcCcchHHHHHH
Confidence 9999999986665 8888776543221111 1133567888999999976 7777653 4799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHH---HHhcCcEEEEEccChhHHHhc--CEEEEEeCC
Q 001329 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAK---VRAMGTSCITISHRPALVAFH--DVVLSLDGE 650 (1099)
Q Consensus 590 ARAL~~~P~iliLDEpTSaLD~~~~~~l~~~---l~~~g~TvI~ItH~l~~i~~~--D~Il~l~~~ 650 (1099)
+.+++.+|++.|||||-||||.++-+.+.+. +++.|.++++|||.-..+.+. |++.+|-++
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~G 221 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDG 221 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECC
Confidence 9999999999999999999999988887654 456799999999999998876 999998764
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=1e-29 Score=315.30 Aligned_cols=198 Identities=17% Similarity=0.195 Sum_probs=148.2
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcC---cCCccEEEeCCCC-----c-----
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW---PLVSGHIAKPGVG-----S----- 509 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~---~p~~G~I~i~g~~-----~----- 509 (1099)
..|+++|+++.|+ ++++|+|+||+|++|+++|||||||||||||+|+|+|.. .|++|+|.+.+++ .
T Consensus 176 ~~I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 176 KDIHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred eeEEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 4699999999995 567999999999999999999999999999999999964 4677887643221 0
Q ss_pred ----------cccccEEEEecCCCCCcccHHHHhccCCCCCCcCC-------------------cCCHHHHHHHHHhcCC
Q 001329 510 ----------DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-------------------PLTHGGMVELLKNVDL 560 (1099)
Q Consensus 510 ----------~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-------------------~~~~~~i~~~l~~~~l 560 (1099)
.+++.+++++|+|.+...+..+|...+.. ..... ...++++.++++.+|+
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANK-DGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccc-cccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 01233566666654322222222211110 00000 0123456667777777
Q ss_pred h-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH
Q 001329 561 E-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA 639 (1099)
Q Consensus 561 ~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~ 639 (1099)
. +..++.+ .+||||||||++|||||+.+|++|||||||++||+.+..++.+.+++.+.|+|+||||+..+.
T Consensus 334 ~~~~~~~~~--------~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~ 405 (718)
T PLN03073 334 TPEMQVKAT--------KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLN 405 (718)
T ss_pred ChHHHhCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence 5 3444444 489999999999999999999999999999999999999999999999999999999999886
Q ss_pred -hcCEEEEEeCC
Q 001329 640 -FHDVVLSLDGE 650 (1099)
Q Consensus 640 -~~D~Il~l~~~ 650 (1099)
.||+|++|+++
T Consensus 406 ~~~d~i~~l~~g 417 (718)
T PLN03073 406 TVVTDILHLHGQ 417 (718)
T ss_pred HhCCEEEEEECC
Confidence 48999999964
No 368
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3.4e-29 Score=258.51 Aligned_cols=186 Identities=23% Similarity=0.294 Sum_probs=145.9
Q ss_pred CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCC---CCcc
Q 001329 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPY---TAVG 527 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~---l~~~ 527 (1099)
.+++|+++|++|++|+++-|+|.||||||||+++|+|-.+|++|+|.+||.+ ......++-|||||. .+..
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4689999999999999999999999999999999999999999999999976 122246888999996 3467
Q ss_pred cHHHHhccCCCCCC---cCC---cCCHHHHHHHHHhcCC--hhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 528 TLRDQLIYPLTSDQ---EVE---PLTHGGMVELLKNVDL--EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 528 Ti~eni~~~~~~~~---~~~---~~~~~~i~~~l~~~~l--~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
||.||+.......+ ... ....+...+-++.+++ +..++. ...-|||||||-++++.|-++.|+|
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~--------~iglLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSD--------RIGLLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcC--------hhhhccchHHHHHHHHHHhcCCCcE
Confidence 99999987533211 000 0112233344555443 222222 1236999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHH----HHhcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 600 AILDECTSAVTTDMEERFCAK----VRAMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~----l~~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|+|||-|+||||.+.+.+++. +.+.+.|.+||||.++-+ .+-+|.++|+++
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G 225 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSG 225 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCC
Confidence 999999999999999998864 456799999999999865 567999999864
No 369
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.96 E-value=2.3e-27 Score=273.21 Aligned_cols=283 Identities=14% Similarity=0.156 Sum_probs=250.0
Q ss_pred HHHHhhHHHHHHHhcCCcchhHHhh-------cCHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 767 LVVSRTWISDRIASLNGTTVKYVLE-------QDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLK 839 (1099)
Q Consensus 767 ~lv~Rt~ls~~va~l~g~~v~~iv~-------~~~~~F~~~l~~~~~~~~~~s~~n~~l~~~~~~l~l~~R~rLt~~~~~ 839 (1099)
+.+.-+.+++++...++..-.+|-+ +|.++|...+..+..++..+..++.+-.|+++++.++||+.||+|..+
T Consensus 100 l~l~~v~l~V~~n~w~~~FydaLq~al~~~~~~d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~ 179 (409)
T PRK11098 100 VTWFLVQVSVAVNAWYAPFYDLIQTALSSPGKVTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMA 179 (409)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999988 699999999999999999999999999999999999999999999999
Q ss_pred HhccCCCceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhCc--------chH----HH
Q 001329 840 SYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQ--------RGV----AI 907 (1099)
Q Consensus 840 ~Yl~~~~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~--------~g~----~~ 907 (1099)
+|++++ +|+||||||+||+++||+...+|..++++++++++-|+.-|+..-|. .-| ..
T Consensus 180 ~Wl~~r----------~ienPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~ 249 (409)
T PRK11098 180 HWQKLR----------HIEGAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIA 249 (409)
T ss_pred HHHhcC----------CCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHH
Confidence 999654 68899999999999999999999999999999999999999885543 333 36
Q ss_pred HHHHHHHHHHHHhhcCCcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 908 LYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWL 987 (1099)
Q Consensus 908 ~~~~~~~~~~~lr~~~P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~ 987 (1099)
.+.|.++++.+...+.+|..++..++|+.|++||+.|.|+.+||| +.|+.++++.|.+..+..+++++....
T Consensus 250 aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~~L~~~F~~V~~N~~rl~~~~~~ 321 (409)
T PRK11098 250 AIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPPTVRELFSNVRKNYFRLYFHYMY 321 (409)
T ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999 669999999999999999999999999
Q ss_pred HHHhHHHHHhhccchhhhhhhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcChhhHHH
Q 001329 988 FGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIF 1067 (1099)
Q Consensus 988 ~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~~k~~~~laG~t~Rv~ 1067 (1099)
.+++.+.. .|+...+++.++++-.+..... -|++++......+ ..+|+.-++.+|++++|+++++.|+.
T Consensus 322 l~~f~~~y-~~~~~i~P~iv~aP~y~aG~It------lG~l~Q~~~AF~~----V~~als~~v~sy~~lael~A~~~RL~ 390 (409)
T PRK11098 322 FNIARILY-LQVDNVFGLFLLFPSIVAGTIT------LGLMTQITNVFGQ----VRGSFQYLINSWTTIVELLSIYKRLR 390 (409)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHcCCcc------hhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999965 8888999998877655543322 3456555444444 46689999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 001329 1068 ELEELLDAAQP 1078 (1099)
Q Consensus 1068 el~~~l~~~~~ 1078 (1099)
++.+++++.+.
T Consensus 391 ~F~~~l~~~~~ 401 (409)
T PRK11098 391 SFEAALDGEPL 401 (409)
T ss_pred HHHHHHhcCCC
Confidence 99999998874
No 370
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=5.9e-28 Score=288.10 Aligned_cols=190 Identities=23% Similarity=0.322 Sum_probs=164.7
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecC
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~ 521 (1099)
...++++|+++.|++++++++++||.|++|+++||+||||+|||||+|+|+|...|.+|+|.+.. .-++||.+|+
T Consensus 319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-----~v~igyf~Q~ 393 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-----TVKIGYFDQH 393 (530)
T ss_pred CeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-----ceEEEEEEeh
Confidence 45799999999997778899999999999999999999999999999999999999999998754 2369999998
Q ss_pred CC-C-CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 522 PY-T-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 522 p~-l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
.. + ...|+.|++....+. ..+..+...|.++++..-....| ...||||||-|+++|+.++.+|.+
T Consensus 394 ~~~l~~~~t~~d~l~~~~~~------~~e~~~r~~L~~f~F~~~~~~~~-------v~~LSGGEk~Rl~La~ll~~~pNv 460 (530)
T COG0488 394 RDELDPDKTVLEELSEGFPD------GDEQEVRAYLGRFGFTGEDQEKP-------VGVLSGGEKARLLLAKLLLQPPNL 460 (530)
T ss_pred hhhcCccCcHHHHHHhhCcc------ccHHHHHHHHHHcCCChHHHhCc-------hhhcCHhHHHHHHHHHHhccCCCE
Confidence 73 2 445899998754322 22677889999999974333323 247999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeC
Q 001329 600 AILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 649 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1099)
|||||||++||.++...+.++|.+..-|+|+||||..++. .+++|+.+++
T Consensus 461 LiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 461 LLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC
Confidence 9999999999999999999999999999999999999997 5799999987
No 371
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.2e-29 Score=253.82 Aligned_cols=183 Identities=27% Similarity=0.373 Sum_probs=149.6
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEEEe
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~v~ 519 (1099)
++.+|++..- ++..++.++||++.+||.+-|+||||||||||+|+|+|+.+|++|+|.++|.+ ++.++.+-|+-
T Consensus 3 L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 3 LEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred chhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 4456666543 45689999999999999999999999999999999999999999999999754 22345566666
Q ss_pred cCCCC-CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
-.|-+ ...|+.||+.|-....+. .+.+.+.++++.+||.++.+-.. .+||-|||+||||||.++..++
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~--------~~LSAGQqRRvAlArL~ls~~p 150 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPV--------GQLSAGQQRRVALARLWLSPAP 150 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccch--------hhcchhHHHHHHHHHHHcCCCC
Confidence 55554 356999999985443221 34567999999999998766532 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA 639 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~ 639 (1099)
+.||||||++||.+.+..+-.++.+ .|-.||..||..--+.
T Consensus 151 LWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred ceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 9999999999999999998887765 4888999999766543
No 372
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=6.6e-29 Score=252.64 Aligned_cols=199 Identities=26% Similarity=0.345 Sum_probs=167.8
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCC-CC-c------ccccc
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VG-S------DLNKE 514 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g-~~-~------~~r~~ 514 (1099)
..++++||+++| ++-.+|+|+||++.+||.-+|+||||+||||++.+|.|-.+|++|++.++| .+ . -.|..
T Consensus 4 ~iL~~~~vsVsF-~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEE-cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 468999999998 467899999999999999999999999999999999999999999999999 43 1 12457
Q ss_pred EEEEecCCCCCc-ccHHHHhccCCCCCCc--------CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001329 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQE--------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1099)
Q Consensus 515 i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~--------~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1099)
||-=||.|..|. -||+||+......+.. ......+++.++|...||.+..++.. ..||-||||
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A--------~~LSHGqKQ 154 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA--------ALLSHGQKQ 154 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh--------hhhccchhh
Confidence 888999999886 5999999876543321 11234457999999999998777654 479999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 586 RlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++.|++.++++|++|+||||++|+..+...+.-+++++ .+.++++|.||+..++ .+|+|-+|+.+
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G 222 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEG 222 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEecc
Confidence 99999999999999999999999977766666666665 3789999999999997 68999999864
No 373
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.3e-29 Score=250.47 Aligned_cols=199 Identities=26% Similarity=0.326 Sum_probs=160.0
Q ss_pred cEEEEeeEEEcC----CC--CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC---------
Q 001329 444 YIEFSGVKVVTP----TG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--------- 508 (1099)
Q Consensus 444 ~I~~~~v~~~y~----~~--~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--------- 508 (1099)
.+.++||+++|. ++ -|+++|+||+++.||++++-||||+|||||+|.|-+-|.|++|+|.+.-.+
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 477888888763 23 389999999999999999999999999999999999999999999985432
Q ss_pred -c---cc-cccEEEEecCCC-CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChH
Q 001329 509 -S---DL-NKEIFYVPQRPY-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582 (1099)
Q Consensus 509 -~---~~-r~~i~~v~Q~p~-l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGG 582 (1099)
. +. |+.||||.|--- ++.-+-.|.+..|....+...+...+++.+++.++++.+-+=.++. ..+|||
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaP-------aTFSGG 156 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAP-------ATFSGG 156 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCC-------cccCCc
Confidence 0 22 467999999542 3344445555555443333333455677889999999876655543 489999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001329 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1099)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1099)
|||||.|||.++.+-+||+|||||++||..+.+.+.+++++ .|..+|=|=||.+.-. -|||++.+..
T Consensus 157 EqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 157 EQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999888865 5999999999998765 4899998864
No 374
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=1.2e-28 Score=325.38 Aligned_cols=190 Identities=15% Similarity=0.184 Sum_probs=151.9
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcC----cCCccEEEeCCCC-----ccccccEEEEecCCCCC-cc
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW----PLVSGHIAKPGVG-----SDLNKEIFYVPQRPYTA-VG 527 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~----~p~~G~I~i~g~~-----~~~r~~i~~v~Q~p~l~-~~ 527 (1099)
+++|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|.+ ...|+.++||+|++.++ ..
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 46999999999999999999999999999999999986 5799999999975 23466799999998665 46
Q ss_pred cHHHHhccCCCCCC---cCCcCC----HHH-HHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 528 TLRDQLIYPLTSDQ---EVEPLT----HGG-MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 528 Ti~eni~~~~~~~~---~~~~~~----~~~-i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
|++||+.++..... .....+ .++ +.++++.+||.+..+..+.+ .....|||||||||+|||+|+.+|++
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~---~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGN---DFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCC---CcCCCCCcccchHHHHHHHHHhCCCE
Confidence 99999988532110 000111 122 34578999998766554321 11247999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChh-H-HHhcCEEEEEeCC
Q 001329 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPA-L-VAFHDVVLSLDGE 650 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~-~-i~~~D~Il~l~~~ 650 (1099)
++|||||+|||+.+...+.+.+++ .|+|+|+++|+++ . ...+|++++|+++
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G 287 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEG 287 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCC
Confidence 999999999999999998887764 3899999999973 4 4568999999864
No 375
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=4.3e-28 Score=257.03 Aligned_cols=178 Identities=17% Similarity=0.266 Sum_probs=147.0
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCC--CCCcccHHHHhcc
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP--YTAVGTLRDQLIY 535 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p--~l~~~Ti~eni~~ 535 (1099)
.++|+||||++++||.+||+|+||||||||+|+|+|.++|++|+|.++|. ++.+..-. +-+..|-+|||.+
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------v~~li~lg~Gf~pelTGreNi~l 112 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------VAPLIELGAGFDPELTGRENIYL 112 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------EehhhhcccCCCcccchHHHHHH
Confidence 47999999999999999999999999999999999999999999999983 44333222 1234589999976
Q ss_pred CCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001329 536 PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615 (1099)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~ 615 (1099)
-....+...++.++.+.++.+..+|.+|++... .++|.||+-|+++|-|...+|+|||+||..+.-|+.-++
T Consensus 113 ~~~~~G~~~~ei~~~~~eIieFaELG~fi~~Pv--------ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~ 184 (249)
T COG1134 113 RGLILGLTRKEIDEKVDEIIEFAELGDFIDQPV--------KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQE 184 (249)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHhhCch--------hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHH
Confidence 322222223356677888999999999998743 489999999999999999999999999999999999887
Q ss_pred HHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 616 RFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 616 ~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+-.+.++ +.+.|+|+|||+++.++ .||++++|+++
T Consensus 185 K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G 223 (249)
T COG1134 185 KCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHG 223 (249)
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCC
Confidence 7555443 35799999999999986 69999999875
No 376
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.2e-28 Score=262.45 Aligned_cols=178 Identities=24% Similarity=0.304 Sum_probs=139.8
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc-----cccccEEEEe-cCCCCCc-----c
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DLNKEIFYVP-QRPYTAV-----G 527 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-----~~r~~i~~v~-Q~p~l~~-----~ 527 (1099)
++++||||+|++|++++++|+||+||||++|+|.|+..|++|.|.++|.+. +.-+++++|+ |...+.. .
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 589999999999999999999999999999999999999999999999751 2224566554 3332211 1
Q ss_pred --cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCC
Q 001329 528 --TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605 (1099)
Q Consensus 528 --Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEp 605 (1099)
.|-..| |..+ .+.-.++....-+.++++.+++... ..||-|||.|+-||.+|+|+|++|+||||
T Consensus 118 s~~v~~~I-y~Ip-----d~~F~~r~~~l~eiLdl~~~lk~~v--------r~LSlGqRmraeLaaaLLh~p~VLfLDEp 183 (325)
T COG4586 118 SLEVLKLI-YEIP-----DDEFAERLDFLTEILDLEGFLKWPV--------RKLSLGQRMRAELAAALLHPPKVLFLDEP 183 (325)
T ss_pred hHHHHHHH-HhCC-----HHHHHHHHHHHHHHhcchhhhhhhh--------hhccchHHHHHHHHHHhcCCCcEEEecCC
Confidence 222211 1111 1122345566677778887776533 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 606 TSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 606 TSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|=+||...+..+.+.+++ .+.||+..||+++-+. -||||+.++.+
T Consensus 184 TvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~G 233 (325)
T COG4586 184 TVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQG 233 (325)
T ss_pred ccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCC
Confidence 999999999999988875 4899999999999775 69999999875
No 377
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=5.2e-28 Score=295.70 Aligned_cols=205 Identities=24% Similarity=0.310 Sum_probs=170.3
Q ss_pred CcEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC---CccEEEeCCCC---cccc
Q 001329 443 NYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL---VSGHIAKPGVG---SDLN 512 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~----~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p---~~G~I~i~g~~---~~~r 512 (1099)
..+.++|++...++. +.+|+|||.+++|||..||+||||||||||+++|+|-.+. .+|+|.+||+. +.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 458899999877553 6899999999999999999999999999999999999875 79999999954 4678
Q ss_pred ccEEEEecCCCCC-cccHHHHhccCCCCC---CcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001329 513 KEIFYVPQRPYTA-VGTLRDQLIYPLTSD---QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1099)
Q Consensus 513 ~~i~~v~Q~p~l~-~~Ti~eni~~~~~~~---~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1099)
+..|||.||..++ ..||+|++.|..... .....+.+++++++++++|+.+..+....+. ....+|||||+||+
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~---~~rgiSGGErkRvs 180 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNP---GIRGLSGGERKRVS 180 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCC---CCCccccchhhHHH
Confidence 8999999998755 579999998853321 1122345678999999999997666543211 12579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChh--HHHhcCEEEEEeCC
Q 001329 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPA--LVAFHDVVLSLDGE 650 (1099)
Q Consensus 589 IARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~--~i~~~D~Il~l~~~ 650 (1099)
||.-+++||++++|||||||||..+..++.+.|++ .|+|||++=|.++ .....|+++.|.++
T Consensus 181 ia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G 247 (613)
T KOG0061|consen 181 IALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEG 247 (613)
T ss_pred HHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCC
Confidence 99999999999999999999999999998887764 4999999999987 44668999999865
No 378
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=8.1e-28 Score=260.92 Aligned_cols=178 Identities=21% Similarity=0.260 Sum_probs=124.0
Q ss_pred CCceeeeeeEEEeCCCEEEEEcCCCCchhHHH-HHhcCcCcCCccEEEeC-----------C-C---C-cccc-ccEEEE
Q 001329 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLF-RVLGGLWPLVSGHIAKP-----------G-V---G-SDLN-KEIFYV 518 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl-~lL~Gl~~p~~G~I~i~-----------g-~---~-~~~r-~~i~~v 518 (1099)
+.++|+|+||+|++||+++|+||||||||||+ ..+. .+|++.+. + . + ...+ ....+.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 45799999999999999999999999999996 3332 12322110 0 0 0 0111 234555
Q ss_pred ecCCCCC---cccHH---HHhccCCCCCCcCCcCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001329 519 PQRPYTA---VGTLR---DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1099)
Q Consensus 519 ~Q~p~l~---~~Ti~---eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1099)
.|++... ..++. +...+-.... ......+..+.++.+++.+ ..++.| .+||||||||++|||
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv~lar 150 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLF---ARVGIRERLGFLVDVGLGYLTLSRSA--------PTLSGGEAQRIRLAT 150 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHCCCCcccccCcc--------CcCCHHHHHHHHHHH
Confidence 5655321 12332 2221100000 0111223357889999976 356666 389999999999999
Q ss_pred HHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 592 LFYHKP--KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 592 AL~~~P--~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||+.+| +++||||||++||+.+...+.+.+++ .|.|+|+|||+++.+..||++++|+.+
T Consensus 151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~ 214 (226)
T cd03270 151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPG 214 (226)
T ss_pred HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCC
Confidence 999998 59999999999999999998887754 589999999999999999999999543
No 379
>PLN03140 ABC transporter G family member; Provisional
Probab=99.95 E-value=6e-28 Score=317.77 Aligned_cols=190 Identities=17% Similarity=0.209 Sum_probs=150.7
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCC---ccEEEeCCCC---ccccccEEEEecCCCCC-cccHH
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVG---SDLNKEIFYVPQRPYTA-VGTLR 530 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g~~---~~~r~~i~~v~Q~p~l~-~~Ti~ 530 (1099)
+++|+|+|+.|++||.++|+||||||||||+|+|+|..+|+ +|+|.++|.+ ...++.++||+|++.++ ..|++
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 46999999999999999999999999999999999999998 9999999975 12367899999997655 57999
Q ss_pred HHhccCCCCCCc----------CCcC------CH------------------HHHHHHHHhcCChhHHhcCCCCcccCCC
Q 001329 531 DQLIYPLTSDQE----------VEPL------TH------------------GGMVELLKNVDLEYLLDRYPPEKEINWG 576 (1099)
Q Consensus 531 eni~~~~~~~~~----------~~~~------~~------------------~~i~~~l~~~~l~~~~~~~p~~~~~~~g 576 (1099)
||+.++...... ...+ .+ ..+.++++.+||++..+....+ ...
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~---~~~ 334 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGD---EMI 334 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCC---ccc
Confidence 999875321100 0000 00 1235678888887654332211 112
Q ss_pred CCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccCh--hHHHhcCEEEEEeCC
Q 001329 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRP--ALVAFHDVVLSLDGE 650 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l--~~i~~~D~Il~l~~~ 650 (1099)
..|||||||||+||++|+.+|++++|||||+|||+.+..++.+.+++ .|+|+|+++|++ +....+|+|++|+++
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 47999999999999999999999999999999999999999888765 389999999986 345679999999864
No 380
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=3.5e-28 Score=242.26 Aligned_cols=130 Identities=43% Similarity=0.664 Sum_probs=112.3
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcc-cHHHHh
Q 001329 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVG-TLRDQL 533 (1099)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~-Ti~eni 533 (1099)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ...++.++|++|++.++.. |+.||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 789999999999999999999999999999999999999999999865 2457899999999887765 69999
Q ss_pred ccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001329 534 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1099)
Q Consensus 534 ~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTS 607 (1099)
..++++.++++.+++.++.++... ....+||||||||++|||||+++|+++||||||+
T Consensus 80 ------------~~~~~~~~~l~~l~~~~~~~~~~~----~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLEDLLDRKIG----QRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGGGTGSBGT----SCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------------cccccccccccccccccccccccc----cccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 135678889999998876554331 1125899999999999999999999999999996
No 381
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.94 E-value=2.5e-27 Score=251.75 Aligned_cols=160 Identities=24% Similarity=0.327 Sum_probs=128.7
Q ss_pred eeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCc---------cEEEeCCCC---ccccccEEEEecCCCCCcccH
Q 001329 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS---------GHIAKPGVG---SDLNKEIFYVPQRPYTAVGTL 529 (1099)
Q Consensus 462 ~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~---------G~I~i~g~~---~~~r~~i~~v~Q~p~l~~~Ti 529 (1099)
+++++++++| +++|+||||||||||+++|+|+.+|.. |++.+.|.+ ...++++++|||+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7789999999 999999999999999999999987663 356666654 12356899999999766
Q ss_pred HHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc----cCCCEEEEeCC
Q 001329 530 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY----HKPKFAILDEC 605 (1099)
Q Consensus 530 ~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~----~~P~iliLDEp 605 (1099)
++.. ..+++.++++. .+..++.| .+||||||||++|||+++ .+|+++|||||
T Consensus 89 -----~~~~--------~~~~~~~~l~~---~~~~~~~~--------~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 -----YSII--------SQGDVSEIIEA---PGKKVQRL--------SLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred -----eeEE--------ehhhHHHHHhC---CCccccch--------hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 2211 13456667766 23333333 489999999999999986 56799999999
Q ss_pred CCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 606 TSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 606 TSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|++||+.....+.+.+++. +.|+|+|||+++.+..+|+++.+...
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~~ 191 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTMQ 191 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEec
Confidence 9999999999999988763 78999999999999999999998754
No 382
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=4.6e-25 Score=243.02 Aligned_cols=174 Identities=22% Similarity=0.259 Sum_probs=125.0
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhc-----C-cC----cCCccEEEeCCCCccccccEEEEecCCC-----
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLG-----G-LW----PLVSGHIAKPGVGSDLNKEIFYVPQRPY----- 523 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~-----G-l~----~p~~G~I~i~g~~~~~r~~i~~v~Q~p~----- 523 (1099)
.-|+|||++|+.|+.++|+|+||||||||++.+. + ++ .|..++...+.. . -.++-+|.|.|.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~--~-~~~~~~vdq~pi~~~~r 85 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLE--H-IDKVIVIDQSPIGRTPR 85 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCccccccccc--c-cCceEEecCCcCCCCCC
Confidence 4699999999999999999999999999999652 1 11 133332221110 0 012333333332
Q ss_pred ------------------------------------------CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh
Q 001329 524 ------------------------------------------TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561 (1099)
Q Consensus 524 ------------------------------------------l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 561 (1099)
....|+.|++.+.... ...++..++++.+||.
T Consensus 86 s~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~------~~~~~~~~~L~~vgL~ 159 (261)
T cd03271 86 SNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI------PKIARKLQTLCDVGLG 159 (261)
T ss_pred CcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh------hhHHHHHHHHHHcCCc
Confidence 1223555554432111 1124566788888887
Q ss_pred hH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccC
Q 001329 562 YL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHK---PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHR 634 (1099)
Q Consensus 562 ~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~---P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~ 634 (1099)
+. .++.+ .+||||||||++|||+|+.+ |+++||||||++||+.....+.+.+++ .|.|+|+|||+
T Consensus 160 ~l~l~~~~--------~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~ 231 (261)
T cd03271 160 YIKLGQPA--------TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN 231 (261)
T ss_pred hhhhcCcc--------ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 63 45544 48999999999999999996 799999999999999999998887764 48999999999
Q ss_pred hhHHHhcCEEEEEeC
Q 001329 635 PALVAFHDVVLSLDG 649 (1099)
Q Consensus 635 l~~i~~~D~Il~l~~ 649 (1099)
++.++.+|++++|..
T Consensus 232 ~~~i~~aD~ii~Lgp 246 (261)
T cd03271 232 LDVIKCADWIIDLGP 246 (261)
T ss_pred HHHHHhCCEEEEecC
Confidence 999999999999953
No 383
>PRK12369 putative transporter; Reviewed
Probab=99.92 E-value=5.4e-22 Score=224.98 Aligned_cols=298 Identities=14% Similarity=0.143 Sum_probs=235.1
Q ss_pred HHHhhchhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ChhHHHHHHHHHHHHHHHHHHHHHH
Q 001329 93 AILLSEMGKMGARDLL--ALVGIVVLRTALSNRLAKVQGFLFRAAFLR-------RVPLFFQLISENILLCFLLSTMHST 163 (1099)
Q Consensus 93 ~~~~p~~~~~~~~~ll--~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~-------~~~~~~~~l~~~~~l~~~~~~~~~~ 163 (1099)
+|++++++. .+.++. +++++.+..+.+++.++.|.+.|+|++..+ +.+.|+..+..+.+++++...+.+.
T Consensus 4 ~~~~~~~~~-~~~ll~~~~~i~l~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~ 82 (326)
T PRK12369 4 SFFASKKWA-LWAYGGLFFILLSLWYQVSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATV 82 (326)
T ss_pred HHhcCCcHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566676554 222344 467888888999999999999999999985 5778888887777766666667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1099)
Q Consensus 164 ~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~ 243 (1099)
..|+.+.+..+||+|||+++.++|+. .++.++||||||++|++.+++....+...++.+++..+.|+.+|+
T Consensus 83 ~~~~~~~l~i~WR~wLT~~~l~~wl~---------~~~~iDNPDQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW 153 (326)
T PRK12369 83 VDYFASHYAFRWREAMTFSYLKFWRN---------KRDNIEGSSQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILW 153 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999996 235589999999999999999999999999999888887766665
Q ss_pred HH----------hhhhHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Q 001329 244 SY----------ASPKYVFWI-LAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESH 312 (1099)
Q Consensus 244 ~~----------~~~~l~l~i-l~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~ 312 (1099)
.. ..|++++++ +++..+...++.++|+++.+++.++|+.||++|..+.+++++.|. | .|.+.
T Consensus 154 ~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~----~E~~~ 226 (326)
T PRK12369 154 GLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y----AKPET 226 (326)
T ss_pred HhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h----hhHHH
Confidence 42 123444554 455566667888999999999999999999999999999999887 3 56678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 001329 313 IQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQS 392 (1099)
Q Consensus 313 l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~ 392 (1099)
++++|+++.+++.+..+...+.++++..+. .+...++.++..+.+++|.+ ++|... .....+..+..+
T Consensus 227 l~~~f~~v~~n~~~~~~~~~~l~~~~~~y~-~~~~i~p~li~aP~y~sg~i-----~lG~l~------Q~~~AF~~v~~a 294 (326)
T PRK12369 227 LIELFTGLRFNYFRLFLHYGYFNIWLISFS-QMMVIVPYLIMAPGLFAGVI-----TLGVLM------QISNAFSQVRSS 294 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHhCCc-----chhHHH------HHHHHHHHHHHH
Confidence 899999999998888777777777776554 34556666777777777765 565322 223345566678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001329 393 LGTLSISSRRLNRLSGYADRIHELMVI 419 (1099)
Q Consensus 393 l~~l~~~~~~l~~~~~~~~Ri~ell~~ 419 (1099)
++.+...+.++.+..+..+|+.++.+.
T Consensus 295 ls~~v~~y~~la~~~A~~~RL~~f~~~ 321 (326)
T PRK12369 295 FSVFIRNWTTITELRSIYKRLKEFEKN 321 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999987653
No 384
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.92 E-value=6.4e-25 Score=236.14 Aligned_cols=184 Identities=16% Similarity=0.138 Sum_probs=133.2
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEe-CCCEEEEEcCCCCchhHHHHHhcC-cCcCCccEEEeCCC----C-ccccccEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVE-PGSNLLITGPNGSGKSSLFRVLGG-LWPLVSGHIAKPGV----G-SDLNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~-~Ge~vaIvG~sGsGKSTLl~lL~G-l~~p~~G~I~i~g~----~-~~~r~~i~ 516 (1099)
.|+++|.. .|.+. ++++|+.. +|++++|+||||||||||+++|++ ++.+..+....+.. . ......|+
T Consensus 5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (213)
T cd03279 5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS 79 (213)
T ss_pred EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE
Confidence 57888887 55432 66777654 589999999999999999999995 55555555543211 1 23356799
Q ss_pred EEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHH--HHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE--LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~--~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
+++|++.... .+..++ ..+.++..+ .++..++.+++++.+ .+||||||||++||||++
T Consensus 80 ~~f~~~~~~~----~~~r~~--------gl~~~~~~~~~~l~~g~l~~~l~~~~--------~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 80 FTFQLGGKKY----RVERSR--------GLDYDQFTRIVLLPQGEFDRFLARPV--------STLSGGETFLASLSLALA 139 (213)
T ss_pred EEEEECCeEE----EEEEec--------CCCHHHHHHhhhhhhcchHHHhcCCc--------cccCHHHHHHHHHHHHHH
Confidence 9999984221 111222 123333333 244555667776655 489999999999999998
Q ss_pred c----------CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCCCc
Q 001329 595 H----------KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGEGE 652 (1099)
Q Consensus 595 ~----------~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~ 652 (1099)
. +|+++||||||++||+.+...+.+.+++ .+.|+|+|||+++.+. .+|++++++++|+
T Consensus 140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 4 6799999999999999999998877654 3889999999999775 5799999987663
No 385
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.92 E-value=3.3e-25 Score=281.88 Aligned_cols=201 Identities=20% Similarity=0.213 Sum_probs=170.6
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i 515 (1099)
..+..+|+++.|+..+.+++++|+.|++||+.|+.|+|||||||++++|.|..+|++|++.++|.+ .+.++.+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 468899999999754449999999999999999999999999999999999999999999999875 1367889
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
||+||+..+.. .|.+|.+.+-...++.....-.+.+...++.+++.+..++.. ..+|||+|+|+++|-|++
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~--------~~ySgG~kRkLs~aiali 714 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQV--------RTYSGGNKRRLSFAIALI 714 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccch--------hhCCCcchhhHHHHHHHh
Confidence 99999877664 699999976433333222223455788999999998888753 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEEeCCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDGEG 651 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l~~~g 651 (1099)
.+|++++|||||+|+||.+++.+.+.+.+ .|+.+|++||.++..+. |||+..|.++.
T Consensus 715 g~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~ 775 (885)
T KOG0059|consen 715 GDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQ 775 (885)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCe
Confidence 99999999999999999999998887654 45699999999999874 89999998753
No 386
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=6e-25 Score=242.16 Aligned_cols=170 Identities=17% Similarity=0.224 Sum_probs=134.2
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCcCcCC-ccEEEeCCC-C---c----cc-cccEEEEecCCCC----------CcccHH
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGLWPLV-SGHIAKPGV-G---S----DL-NKEIFYVPQRPYT----------AVGTLR 530 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-~G~I~i~g~-~---~----~~-r~~i~~v~Q~p~l----------~~~Ti~ 530 (1099)
..+++||||||||||||+++|++++.++ .|++...+. + . .. +.++++++|++.. +..||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999876 468877665 2 0 12 3489999999631 245888
Q ss_pred HHhccCCCCCC--cCCcCCHHHHHHHHHhcCCh--------------------hHHhcCCCCcccCCCCCcChHHHHHHH
Q 001329 531 DQLIYPLTSDQ--EVEPLTHGGMVELLKNVDLE--------------------YLLDRYPPEKEINWGDELSLGEQQRLG 588 (1099)
Q Consensus 531 eni~~~~~~~~--~~~~~~~~~i~~~l~~~~l~--------------------~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1099)
+|+.++..... .......+++.++++.+++. +..++.| .+||||||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~--------~~lS~G~~qr~~ 176 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESL--------TELSGGQRSLVA 176 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccc--------cccCHHHHHHHH
Confidence 88876543211 01224567899999999985 2222323 489999999999
Q ss_pred HHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEe
Q 001329 589 MARLFY----HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLD 648 (1099)
Q Consensus 589 IARAL~----~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1099)
||||++ .+|+++|+||||++||+...+.+.+.+++ .|.|+|+|||+.+....||+++-+.
T Consensus 177 la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 177 LSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 999997 57899999999999999999999998875 4889999999999999999999775
No 387
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=1e-24 Score=238.74 Aligned_cols=198 Identities=19% Similarity=0.260 Sum_probs=121.1
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCcc--------EEEeCCCC-ccccccE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--------HIAKPGVG-SDLNKEI 515 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G--------~I~i~g~~-~~~r~~i 515 (1099)
|+++|.. +| .+..++++++ |++++|+||||||||||+++|++++.+..+ .+..+|.+ ......+
T Consensus 4 i~~~nfk-sy-~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v 76 (243)
T cd03272 4 VIIQGFK-SY-KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYV 76 (243)
T ss_pred EEEeCcc-Cc-ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEE
Confidence 4555532 24 3456788876 899999999999999999999855432222 12222211 1112234
Q ss_pred EEEecCCCC--C----cccHHHHhccCCCCCCc-CCcCCHHHHHHHHHhcCChhHHhc--CCC----------CcccCCC
Q 001329 516 FYVPQRPYT--A----VGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDR--YPP----------EKEINWG 576 (1099)
Q Consensus 516 ~~v~Q~p~l--~----~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~~~~~--~p~----------~~~~~~g 576 (1099)
.+++|++.- + ..+++..+.+....... ....+.+++...++.+++...-.. .+. +.....+
T Consensus 77 ~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~ 156 (243)
T cd03272 77 EIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEM 156 (243)
T ss_pred EEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccc
Confidence 444444311 0 00111111110000000 011344556666666655421000 000 0001124
Q ss_pred CCcChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeC
Q 001329 577 DELSLGEQQRLGMARLFY----HKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~----~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
.+||||||||++||||++ .+|+++|+||||++||+.+.+.+.+.+++. ++|+|+++|+.+..+.||++++++-
T Consensus 157 ~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~~l~~ 235 (243)
T cd03272 157 QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFYGVKF 235 (243)
T ss_pred cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEEE
Confidence 589999999999999996 368999999999999999999999888763 7899999999988889999999963
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=9.1e-25 Score=250.44 Aligned_cols=193 Identities=18% Similarity=0.254 Sum_probs=159.9
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecC
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~ 521 (1099)
.+.+.+.||+|.|+++..+++++||-|+.++++++|||||||||||+|++.|...|+.|.|.-.-. .++++..|+
T Consensus 387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----~~~~~y~Qh 461 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----NKLPRYNQH 461 (614)
T ss_pred CCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----ccchhhhhh
Confidence 457999999999987778999999999999999999999999999999999999999999965432 245555554
Q ss_pred CC---CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 522 PY---TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 522 p~---l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
.. ....+.-|++.-..+. ....+++..++.++||....+..|. .+||+|||.||.+||+.++.|.
T Consensus 462 ~~e~ldl~~s~le~~~~~~~~-----~~~~e~~r~ilgrfgLtgd~q~~p~-------~~LS~Gqr~rVlFa~l~~kqP~ 529 (614)
T KOG0927|consen 462 LAEQLDLDKSSLEFMMPKFPD-----EKELEEMRSILGRFGLTGDAQVVPM-------SQLSDGQRRRVLFARLAVKQPH 529 (614)
T ss_pred hHhhcCcchhHHHHHHHhccc-----cchHHHHHHHHHHhCCCccccccch-------hhcccccchhHHHHHHHhcCCc
Confidence 32 2234666666532211 1356788899999999865555554 5899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHh-cCEEEEEeCCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAF-HDVVLSLDGEG 651 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g 651 (1099)
+|+|||||++||.++...+-+++.+..-++|+||||.-++.+ +++|++.++++
T Consensus 530 lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~ 583 (614)
T KOG0927|consen 530 LLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGT 583 (614)
T ss_pred EEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCc
Confidence 999999999999999999999999998899999999999874 78888887653
No 389
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.90 E-value=1e-23 Score=225.43 Aligned_cols=160 Identities=21% Similarity=0.224 Sum_probs=124.7
Q ss_pred eeEEEeCCCEEEEEcCCCCchhHHHHHh----cCcCcCCccEEEeCCC---CccccccEEEEecCCC-----CC-cccHH
Q 001329 464 LTLKVEPGSNLLITGPNGSGKSSLFRVL----GGLWPLVSGHIAKPGV---GSDLNKEIFYVPQRPY-----TA-VGTLR 530 (1099)
Q Consensus 464 vsl~i~~Ge~vaIvG~sGsGKSTLl~lL----~Gl~~p~~G~I~i~g~---~~~~r~~i~~v~Q~p~-----l~-~~Ti~ 530 (1099)
.++++.+| +++|+||||||||||+++| .|..+|++|.+..+.. ....+..+++++|++. .. ..|+.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 34667777 9999999999999999999 4999998887652211 0233567999999982 11 13888
Q ss_pred HHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH------HHHHHHHccCCCEEEEeC
Q 001329 531 DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR------LGMARLFYHKPKFAILDE 604 (1099)
Q Consensus 531 eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQR------laIARAL~~~P~iliLDE 604 (1099)
||+.+.. .+++.+.+ ++.+ .+||+||+|| ++||||++.+|+++++||
T Consensus 95 ~~~~~~~----------~~~~~~~~---------~~~~--------~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 95 ENVIFCH----------QGESNWPL---------LDMR--------GRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hceeeec----------hHHHHHHH---------hcCc--------cccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 8887641 22233332 4444 4899999996 789999999999999999
Q ss_pred CCCCCCHHHHH-HHHHHHHh---c-CcEEEEEccChhHHHhcCEEEEEeCCC
Q 001329 605 CTSAVTTDMEE-RFCAKVRA---M-GTSCITISHRPALVAFHDVVLSLDGEG 651 (1099)
Q Consensus 605 pTSaLD~~~~~-~l~~~l~~---~-g~TvI~ItH~l~~i~~~D~Il~l~~~g 651 (1099)
||++||+.... .+.+.+++ . |.|+|+|||+++.+..+|++++++.+|
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~~ 199 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKDG 199 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeCC
Confidence 99999999998 88887754 2 789999999999988999999998765
No 390
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.90 E-value=1.3e-20 Score=217.52 Aligned_cols=284 Identities=14% Similarity=0.175 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 108 LALVGIVVLRTALSNRLAKVQGFLFRAAFL-------RRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180 (1099)
Q Consensus 108 l~~~~l~l~~t~ls~~l~~~~~~~~~a~~~-------~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~ 180 (1099)
++++++.+..+.+++.++.|.+.|+|++.. ++.+.|++.+..+..++++...+.+...|+.+.+..+||++||
T Consensus 95 ~~il~l~l~~v~l~V~~n~w~~~FydaLq~al~~~~~~d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT 174 (409)
T PRK11098 95 ALIIFVTWFLVQVSVAVNAWYAPFYDLIQTALSSPGKVTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMN 174 (409)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667778889999999999999999987 4778888888877777776667778889999999999999999
Q ss_pred HHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhh
Q 001329 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA-----------SPK 249 (1099)
Q Consensus 181 ~~l~~~~f~~l~~~~~~~~~~~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~-----------~~~ 249 (1099)
+++.++|++.. +.+||||||++|+.++++...++...++.++++.+.|+.+|+... .|+
T Consensus 175 ~~yl~~Wl~~r----------~ienPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg 244 (409)
T PRK11098 175 EYYMAHWQKLR----------HIEGAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPY 244 (409)
T ss_pred HHHHHHHHhcC----------CCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCch
Confidence 99999998431 456899999999999999999999999999888877766665422 233
Q ss_pred HHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Q 001329 250 YVFWI-LAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVL 328 (1099)
Q Consensus 250 l~l~i-l~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~ 328 (1099)
+.+++ +++..+...++.++|+++.+++.++|+.||++|..+.++++|+| +.|...++++|+++.+++.+..
T Consensus 245 ~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~~L~~~F~~V~~N~~rl~ 316 (409)
T PRK11098 245 GLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPPTVRELFSNVRKNYFRLY 316 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 55566666788899999999999999999999999999999988 4577788999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 329 HDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSG 408 (1099)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~ 408 (1099)
......++++.... .....++.++..+.+++|.+ ++|... .....+..+..+++.+...+.++.+..+
T Consensus 317 ~~~~~l~~f~~~y~-~~~~i~P~iv~aP~y~aG~I-----tlG~l~------Q~~~AF~~V~~als~~v~sy~~lael~A 384 (409)
T PRK11098 317 FHYMYFNIARILYL-QVDNVFGLFLLFPSIVAGTI-----TLGLMT------QITNVFGQVRGSFQYLINSWTTIVELLS 384 (409)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCc-----chhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776543 34445666666666777665 666422 2233455666788888899999999999
Q ss_pred HHHHHHHHHhhch
Q 001329 409 YADRIHELMVISR 421 (1099)
Q Consensus 409 ~~~Ri~ell~~~~ 421 (1099)
..+|+.++.+.-+
T Consensus 385 ~~~RL~~F~~~l~ 397 (409)
T PRK11098 385 IYKRLRSFEAALD 397 (409)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999876543
No 391
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=4.9e-24 Score=243.33 Aligned_cols=191 Identities=20% Similarity=0.295 Sum_probs=139.8
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecC
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~ 521 (1099)
...|..++.+..|. ++.+|++-++++..|.++|+||+||+|||||+|+|+. |+|..-..+++.+..--..-|+
T Consensus 78 ~~Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~ 150 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQS 150 (582)
T ss_pred ccceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhh
Confidence 35688999999884 7889999999999999999999999999999999998 5554332222221110011111
Q ss_pred CCCCcccHHHHhccCCCCCCcCCcCCHHHHHH-HHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001329 522 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE-LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1099)
Q Consensus 522 p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~-~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1099)
. +-.++-+..+..-.. +.....+.+++.. +|..+|..+-....|- .+||||.|-|+++||||.++||||
T Consensus 151 ~-l~~D~~~~dfl~~e~--~l~~~~~l~ei~~~~L~glGFt~emq~~pt-------~slSGGWrMrlaLARAlf~~pDlL 220 (582)
T KOG0062|consen 151 V-LESDTERLDFLAEEK--ELLAGLTLEEIYDKILAGLGFTPEMQLQPT-------KSLSGGWRMRLALARALFAKPDLL 220 (582)
T ss_pred h-hhccHHHHHHHHhhh--hhhccchHHHHHHHHHHhCCCCHHHHhccc-------cccCcchhhHHHHHHHHhcCCCEE
Confidence 1 112222222222110 0001114456666 8999999877777674 589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHh-cCEEEEEeC
Q 001329 601 ILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAF-HDVVLSLDG 649 (1099)
Q Consensus 601 iLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~-~D~Il~l~~ 649 (1099)
+|||||+.||..+..++.+.|...+.|+|+||||.+.+.. |.-|+-+++
T Consensus 221 LLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~ 270 (582)
T KOG0062|consen 221 LLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLEN 270 (582)
T ss_pred eecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999989999999999998753 555665654
No 392
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=2.2e-24 Score=231.72 Aligned_cols=181 Identities=17% Similarity=0.089 Sum_probs=128.4
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-cccc-ccEEEEecC
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLN-KEIFYVPQR 521 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~~r-~~i~~v~Q~ 521 (1099)
.|+++|.. .| ++..+++++++ ++++|+|||||||||++++|... .|.+ ...+ +++++++|+
T Consensus 5 ~l~l~nfk-~~-~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~----------~G~~~~~~~~~~i~~~~~~ 67 (212)
T cd03274 5 KLVLENFK-SY-AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV----------FGFRASKMRQKKLSDLIHN 67 (212)
T ss_pred EEEEECcc-cC-CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH----------hccCHHHhhhhhHHHHhcC
Confidence 36777765 45 35678999988 89999999999999999999722 2322 1122 468888888
Q ss_pred CCCCc-ccHHHHhccCCCCC--------CcCCcCCHH--HHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001329 522 PYTAV-GTLRDQLIYPLTSD--------QEVEPLTHG--GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1099)
Q Consensus 522 p~l~~-~Ti~eni~~~~~~~--------~~~~~~~~~--~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1099)
...++ .|.++++.+..... +........ ...++++.+++.+..++.+ ..||+|||||++||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~--------~~lS~G~~~r~~la 139 (212)
T cd03274 68 SAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI--------SNLSGGEKTLSSLA 139 (212)
T ss_pred CCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch--------hhcCHHHHHHHHHH
Confidence 76543 36666555432110 000000000 0123445555554444433 47999999999999
Q ss_pred HHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeC
Q 001329 591 RLFYH----KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 591 RAL~~----~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
||++. +|+++++||||++||+.+...+.+.+++. +.|+|++||+.+..+.||++++|..
T Consensus 140 ~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 140 LVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99963 58999999999999999999999988764 6799999999988899999999975
No 393
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=7.4e-24 Score=263.82 Aligned_cols=195 Identities=23% Similarity=0.308 Sum_probs=162.2
Q ss_pred CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc--CCccEEEeCCCC---ccccccEEEEecCC-CCCcccHH
Q 001329 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--LVSGHIAKPGVG---SDLNKEIFYVPQRP-YTAVGTLR 530 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--p~~G~I~i~g~~---~~~r~~i~~v~Q~p-~l~~~Ti~ 530 (1099)
.+++|+|||=-++||..+||+|+||||||||+++|+|=.. ..+|+|.++|.+ +..++.+|||.|++ +++.-||+
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchH
Confidence 3589999999999999999999999999999999999653 357999999975 45788999999976 57778999
Q ss_pred HHhccCCCCC--CcCCcCC-HHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC-CEEEEeCCC
Q 001329 531 DQLIYPLTSD--QEVEPLT-HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP-KFAILDECT 606 (1099)
Q Consensus 531 eni~~~~~~~--~~~~~~~-~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P-~iliLDEpT 606 (1099)
|-+.|....+ ...+..+ .+-++++++.++|+++.+.... ..|..||..||+|+.||--|+.|| .||+|||||
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG----~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPT 958 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVG----LPGSGLSTEQRKRLTIGVELVANPSSILFLDEPT 958 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhcc----CCCCCCCHHHhceeeEEEEEecCCceeEEecCCC
Confidence 9998854322 1112222 2568889999999988877643 235679999999999999999999 999999999
Q ss_pred CCCCHHHHHHHHHHHHh---cCcEEEEEccChhH--HHhcCEEEEEeCCCceEE
Q 001329 607 SAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGEGEWRV 655 (1099)
Q Consensus 607 SaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~--i~~~D~Il~l~~~g~~~~ 655 (1099)
||||..+...+++.+++ .|+||+..-|.++. .+..|+++.|+.+|....
T Consensus 959 SGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY 1012 (1391)
T KOG0065|consen 959 SGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVY 1012 (1391)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEE
Confidence 99999999998888775 59999999999884 467899999998876553
No 394
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.88 E-value=8.8e-24 Score=211.59 Aligned_cols=188 Identities=22% Similarity=0.277 Sum_probs=153.5
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
.+.++||.... -|-.+|.++..||++-+|||||||||||+-.++|+.+ .+|+|.++|.+ .++.++-+|
T Consensus 3 l~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 3 LMQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHH
Confidence 46777887643 3677899999999999999999999999999999985 78999999986 345566678
Q ss_pred EecCC-CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc-
Q 001329 518 VPQRP-YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH- 595 (1099)
Q Consensus 518 v~Q~p-~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~- 595 (1099)
+.|+. ..|...|...+....+. +...+++.++++.++++|.+.|.. ++|||||.|||-+|-.+++
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~-----~~~a~~i~~i~~~L~l~DKL~Rs~--------~qLSGGEWQRVRLAav~LQv 143 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPD-----KTRTELLNDVAGALALDDKLGRST--------NQLSGGEWQRVRLAAVVLQI 143 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCch-----HHHHHHHHHHHhhhcccchhhhhh--------hhcCcccceeeEEeEEEEEe
Confidence 87754 35667888887764432 134467888899999998887765 3899999999999998875
Q ss_pred ----C--CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChh-HHHhcCEEEEEeCC
Q 001329 596 ----K--PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPA-LVAFHDVVLSLDGE 650 (1099)
Q Consensus 596 ----~--P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~-~i~~~D~Il~l~~~ 650 (1099)
| .+++|+|||-++||...+..+.+++.+ .|.+|||.+||++ +++++|+++.+..+
T Consensus 144 ~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG 208 (248)
T COG4138 144 TPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRG 208 (248)
T ss_pred cCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcC
Confidence 3 469999999999999999887776654 5999999999998 78999999988764
No 395
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.6e-22 Score=236.10 Aligned_cols=197 Identities=22% Similarity=0.297 Sum_probs=153.7
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------cccccc
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKE 514 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~ 514 (1099)
...++++|++.. ..++|+||++++||++||.|--|||+|-|+++|.|..++.+|+|.++|.+ +.++..
T Consensus 261 ~~~l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 261 EPVLEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred CcEEEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 346788888752 25899999999999999999999999999999999999999999999974 245668
Q ss_pred EEEEecCCC----CCcccHHHHhccCCCCC-C---cCC-cCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001329 515 IFYVPQRPY----TAVGTLRDQLIYPLTSD-Q---EVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1099)
Q Consensus 515 i~~v~Q~p~----l~~~Ti~eni~~~~~~~-~---~~~-~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1099)
|+|||.|-- +...+|++|+..+.... . ... ....+.+.+..+.+++.. |. .. ....+||||-||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~-----~s-~~-~~v~~LSGGNQQ 408 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT-----PS-PE-QPIGTLSGGNQQ 408 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCccc-----CC-cc-chhhcCCchhhh
Confidence 999998753 44579999999872211 0 011 111223344444444431 11 00 123479999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 586 RlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+|.|||.|..+|++|||||||.|+|.-+..+|++++++ .|++||+||-++..+ ..||||+||.++
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~G 477 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREG 477 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999988775 599999999998766 589999999864
No 396
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.5e-22 Score=224.92 Aligned_cols=189 Identities=22% Similarity=0.287 Sum_probs=152.0
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecC
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~ 521 (1099)
.+.+-+.||+|.||+.+|++++++|-|.-..+++||||||.|||||+++|.|-++|++|+..-+- |-+||+.-|.
T Consensus 584 PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----rL~iG~FdQh 658 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----RLRIGWFDQH 658 (807)
T ss_pred CCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----eeeeechhhh
Confidence 45788999999999999999999999999999999999999999999999999999999986543 4579998886
Q ss_pred CC---CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 522 PY---TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 522 p~---l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
.. ....|-.|.+.-.. ....++...+|-.+||........ ...|||||+-||++|-.-+..|+
T Consensus 659 ~~E~L~~Eetp~EyLqr~F-------Nlpyq~ARK~LG~fGL~sHAHTik-------ikdLSGGQKaRValaeLal~~PD 724 (807)
T KOG0066|consen 659 ANEALNGEETPVEYLQRKF-------NLPYQEARKQLGTFGLASHAHTIK-------IKDLSGGQKARVALAELALGGPD 724 (807)
T ss_pred hHHhhccccCHHHHHHHhc-------CCChHHHHHHhhhhhhhhccceEe-------eeecCCcchHHHHHHHHhcCCCC
Confidence 52 12235555443211 134566777888888765333211 24699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCE-EEEEeC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDV-VLSLDG 649 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~-Il~l~~ 649 (1099)
+|||||||++||.++...+-+++.+..-.||+||||..++...|. .+|+++
T Consensus 725 vlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 725 VLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVEN 776 (807)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEcc
Confidence 999999999999999999999999998899999999888765433 334443
No 397
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.3e-22 Score=223.06 Aligned_cols=176 Identities=21% Similarity=0.253 Sum_probs=123.3
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------c-------cccccEEEEecCCCC--CcccHHHHh-cc
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------S-------DLNKEIFYVPQRPYT--AVGTLRDQL-IY 535 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~-------~~r~~i~~v~Q~p~l--~~~Ti~eni-~~ 535 (1099)
.+++|+||||||||||+.+|.++..+..|++..++.+ . ...-.+.|..|++.. +..++++.. .|
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999988877877654321 0 111234444454321 122222211 11
Q ss_pred CCCCCCcCCcCCHHHHHHHHHhcCChhH--------------HhcCCCCcccCCCCCcChHHHHHHHHHHHHccC----C
Q 001329 536 PLTSDQEVEPLTHGGMVELLKNVDLEYL--------------LDRYPPEKEINWGDELSLGEQQRLGMARLFYHK----P 597 (1099)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~l~~~--------------~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~----P 597 (1099)
.. . ....+.+++.+.++.+|+..+ .+..|.........+||||||||++||||++.+ |
T Consensus 103 ~i--n--gk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p 178 (247)
T cd03275 103 RI--N--GKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPA 178 (247)
T ss_pred EE--C--CEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCC
Confidence 10 0 112456777889999998532 222231111112357999999999999999864 9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEccChhHHHhcCEEEEEeCCC
Q 001329 598 KFAILDECTSAVTTDMEERFCAKVRAM---GTSCITISHRPALVAFHDVVLSLDGEG 651 (1099)
Q Consensus 598 ~iliLDEpTSaLD~~~~~~l~~~l~~~---g~TvI~ItH~l~~i~~~D~Il~l~~~g 651 (1099)
+++|+||||++||+.....+.+.+++. |.|+|+|||+.+.+..+|+++++..++
T Consensus 179 ~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 179 PFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYRDQ 235 (247)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEecC
Confidence 999999999999999999988877653 889999999999999999999997654
No 398
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.87 E-value=3.7e-22 Score=229.18 Aligned_cols=218 Identities=19% Similarity=0.252 Sum_probs=146.9
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecC
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~ 521 (1099)
...+.++|+++.|+ +..+++|++|++.+|+.+||+|+|||||||++++|.|-..|..-++.+ ..+.++
T Consensus 73 s~dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~-----------y~ls~e 140 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF-----------YLLSRE 140 (614)
T ss_pred cccceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch-----------hhhccc
Confidence 35689999999985 678999999999999999999999999999999999988885544422 112221
Q ss_pred CCCCcccHHHHhc-cCCCC-----------CC---cCCcCCHHHHHHHHHhcCChhHHhcC----C---C--CcccCCCC
Q 001329 522 PYTAVGTLRDQLI-YPLTS-----------DQ---EVEPLTHGGMVELLKNVDLEYLLDRY----P---P--EKEINWGD 577 (1099)
Q Consensus 522 p~l~~~Ti~eni~-~~~~~-----------~~---~~~~~~~~~i~~~l~~~~l~~~~~~~----p---~--~~~~~~g~ 577 (1099)
-.-...+..+.+. ..... .. ..+...-..+.+.+..++.+.+-.+. . . .....|..
T Consensus 141 ~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~ 220 (614)
T KOG0927|consen 141 IEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVK 220 (614)
T ss_pred CCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhh
Confidence 1100111111111 00000 00 00001112233334444433221110 0 0 00012446
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCc-EEEEEccChhHHH-hcCEEEEEeCCCceEE
Q 001329 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT-SCITISHRPALVA-FHDVVLSLDGEGEWRV 655 (1099)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~-TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~ 655 (1099)
.||||||.|+++||+|+.+|++|+|||||++||.++..++-+.|.+... ++++++|.-+++. .|.+|+.++++. ...
T Consensus 221 ~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kk-l~~ 299 (614)
T KOG0927|consen 221 DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKK-LIY 299 (614)
T ss_pred ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccc-eee
Confidence 8999999999999999999999999999999999999999999999877 8999999999886 689999998764 344
Q ss_pred eecCCCccccccccccc
Q 001329 656 HDKRDGSSVVTKSGINM 672 (1099)
Q Consensus 656 ~~~~~~~~~~~~~~~~~ 672 (1099)
.+++++.++.+.++..+
T Consensus 300 y~Gnydqy~~tr~E~~~ 316 (614)
T KOG0927|consen 300 YEGNYDQYVKTRSELEE 316 (614)
T ss_pred ecCCHHHHhhHHHHHhH
Confidence 55666666666654443
No 399
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.86 E-value=1.7e-21 Score=245.72 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=67.8
Q ss_pred CCcChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeC
Q 001329 577 DELSLGEQQRLGMARLFYHKP---KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P---~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
.+||||||||++|||+|+++| +++||||||++||+.....+.+.+++ .|.|+|+|||+++.+..+|+|++|..
T Consensus 829 ~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp 907 (943)
T PRK00349 829 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGP 907 (943)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecC
Confidence 589999999999999999999 99999999999999999998887764 48999999999999999999999953
No 400
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.86 E-value=2.3e-21 Score=253.44 Aligned_cols=190 Identities=26% Similarity=0.309 Sum_probs=134.5
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHH---------HhcCcCcCCc----cE----EEeCC
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFR---------VLGGLWPLVS----GH----IAKPG 506 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~---------lL~Gl~~p~~----G~----I~i~g 506 (1099)
.++++|++. ..|+|+||+|++||+++|+|+||||||||++ .+.|..++.. +. |.+|.
T Consensus 600 ~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQ 673 (1809)
T PRK00635 600 TLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITR 673 (1809)
T ss_pred eEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecC
Confidence 578888763 3799999999999999999999999999999 6666533211 11 12221
Q ss_pred CC----------------cccc--------------ccEEEEecC------------------C--C-------------
Q 001329 507 VG----------------SDLN--------------KEIFYVPQR------------------P--Y------------- 523 (1099)
Q Consensus 507 ~~----------------~~~r--------------~~i~~v~Q~------------------p--~------------- 523 (1099)
.. +++| ....|.+|. | +
T Consensus 674 spigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~ 753 (1809)
T PRK00635 674 DLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLP 753 (1809)
T ss_pred CCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCH
Confidence 00 0111 112233332 1 0
Q ss_pred -----CC-cccHHHHhccCCCCCCc---CCcCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 524 -----TA-VGTLRDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 524 -----l~-~~Ti~eni~~~~~~~~~---~~~~~~~~i~~~l~~~~l~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
.+ ..||.|++.++...... ..+...+++ ++++.+|+.++ .++.+ .+||||||||++|||||
T Consensus 754 e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~--------~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 754 QVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL--------SSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc--------ccCCHHHHHHHHHHHHH
Confidence 11 23778887765332100 001122334 57888899876 56654 38999999999999999
Q ss_pred c---cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEe
Q 001329 594 Y---HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLD 648 (1099)
Q Consensus 594 ~---~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1099)
+ ++|+++||||||++||+...+++.+.+++ .|.|+|+|||+++.++.+|++++|.
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~ 885 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELG 885 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEc
Confidence 8 69999999999999999999998887754 5899999999999998999999996
No 401
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=5.7e-21 Score=215.11 Aligned_cols=172 Identities=26% Similarity=0.371 Sum_probs=135.9
Q ss_pred eeeeeeEEE-----eCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCC-CCcccHHHHh
Q 001329 460 LVENLTLKV-----EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY-TAVGTLRDQL 533 (1099)
Q Consensus 460 vL~~vsl~i-----~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~-l~~~Ti~eni 533 (1099)
.+.++.|++ ..||+++++||||-||||++++|+|..+|++|. . . .-+++|=||--. -+.+||.+-+
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~-~------~~~vSyKPQyI~~~~~gtV~~~l 422 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-E-E------DLKVSYKPQYISPDYDGTVEDLL 422 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-C-c------cceEeecceeecCCCCCcHHHHH
Confidence 344566655 467889999999999999999999999999998 1 1 126889998532 3678999877
Q ss_pred ccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 001329 534 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613 (1099)
Q Consensus 534 ~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~ 613 (1099)
.-..... . .+.---.++++-++|++.+++.. .+|||||.||||||.||.+++|+.+||||++.||.+.
T Consensus 423 ~~~~~~~-~---~~s~~~~ei~~pl~l~~i~e~~v--------~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEq 490 (591)
T COG1245 423 RSAIRSA-F---GSSYFKTEIVKPLNLEDLLERPV--------DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQ 490 (591)
T ss_pred HHhhhhh-c---ccchhHHhhcCccchHHHHhccc--------ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHH
Confidence 6433221 0 11122346788889999888854 3799999999999999999999999999999999988
Q ss_pred HHHHHHHHH----hcCcEEEEEccChhHHHh-cCEEEEEeCCC
Q 001329 614 EERFCAKVR----AMGTSCITISHRPALVAF-HDVVLSLDGEG 651 (1099)
Q Consensus 614 ~~~l~~~l~----~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g 651 (1099)
+-.+-+.++ +.++|.++|-||+-.+.+ +|++++++++.
T Consensus 491 R~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GeP 533 (591)
T COG1245 491 RIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEP 533 (591)
T ss_pred HHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEecCC
Confidence 766555554 458999999999999875 79999999864
No 402
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=5.5e-21 Score=218.56 Aligned_cols=194 Identities=19% Similarity=0.240 Sum_probs=160.9
Q ss_pred CCcEEEEeeEEEcCCCC-ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEec
Q 001329 442 ANYIEFSGVKVVTPTGN-VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~-~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q 520 (1099)
.+.+++.+|+|.|+.+. +.+.++++.++.-+++++||+||+||||++|++.|-..|..|.+.+.+ |.+|+|-.|
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----r~ri~~f~Q 434 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----RLRIKYFAQ 434 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----cceecchhH
Confidence 56799999999998776 799999999999999999999999999999999999999999998776 568999999
Q ss_pred CCCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 521 RPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 521 ~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
.-.-+ ...+.+ +.+-... .+..+++++.+.|..+|++.-+...+. ..||||||-||++|.+...+|.+
T Consensus 435 hhvd~l~~~v~~-vd~~~~~---~pG~~~ee~r~hl~~~Gl~g~la~~si-------~~LSGGQKsrvafA~~~~~~Phl 503 (582)
T KOG0062|consen 435 HHVDFLDKNVNA-VDFMEKS---FPGKTEEEIRRHLGSFGLSGELALQSI-------ASLSGGQKSRVAFAACTWNNPHL 503 (582)
T ss_pred hhhhHHHHHhHH-HHHHHHh---CCCCCHHHHHHHHHhcCCCchhhhccc-------cccCCcchhHHHHHHHhcCCCcE
Confidence 65322 112211 1110000 012378899999999999854444332 37999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001329 600 AILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1099)
|+|||||+.||.++...+-++++..+-.||+||||.+++. -|+.+++.+++.
T Consensus 504 LVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~ 556 (582)
T KOG0062|consen 504 LVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGK 556 (582)
T ss_pred EEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCc
Confidence 9999999999999999999999999889999999999997 589999998754
No 403
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=1.6e-20 Score=199.88 Aligned_cols=162 Identities=17% Similarity=0.078 Sum_probs=115.3
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccEEEEecCCCCCcccHHHHh
Q 001329 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIFYVPQRPYTAVGTLRDQL 533 (1099)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i~~v~Q~p~l~~~Ti~eni 533 (1099)
++++++++.+| +.+|+||||||||||+.+|.-....... ....|.. ..-...|.+.+|+.-.+. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 46778888887 7799999999999999999743322211 0001110 111346888888765433 1
Q ss_pred ccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH----ccCCCEEEEeCCCCCC
Q 001329 534 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF----YHKPKFAILDECTSAV 609 (1099)
Q Consensus 534 ~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL----~~~P~iliLDEpTSaL 609 (1099)
.. .....+++.++++. .+..++.+ .+||+|||||++||+|+ +.+|+++||||||++|
T Consensus 84 ----~~----~~~~~~~~~~~l~~---~~~~~~~~--------~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~gl 144 (198)
T cd03276 84 ----PL----CVLSQDMARSFLTS---NKAAVRDV--------KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFM 144 (198)
T ss_pred ----cC----CHHHHHHHHHHhcc---ccccCCcc--------cccChhHHHHHHHHHHHHHhcccCCCEEEecCccccc
Confidence 10 11223456666665 33334433 48999999999999999 6999999999999999
Q ss_pred CHHHHHHHHHHHHhc------CcEEEEEccChhHHHhcCEEEEEeC
Q 001329 610 TTDMEERFCAKVRAM------GTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 610 D~~~~~~l~~~l~~~------g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
|+.....+.+.+++. +.|+|++||+++.+...|+|-++..
T Consensus 145 D~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~ 190 (198)
T cd03276 145 DMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRM 190 (198)
T ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEe
Confidence 999999888766541 3589999999999988899999964
No 404
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.81 E-value=1.6e-19 Score=207.15 Aligned_cols=202 Identities=22% Similarity=0.274 Sum_probs=158.7
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc----c----ccc
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----D----LNK 513 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~----~----~r~ 513 (1099)
...++++|+++.-..+.+.++||||+|.+||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|.+- . .+.
T Consensus 255 ~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred CeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 45799999999765556889999999999999999999999999999999999999999999999752 1 235
Q ss_pred cEEEEecCCC----CCcccHHHHhccCCCCCC---cCCcCCHHH----HHHHHHhcCChhHHhcCCCCcccCCCCCcChH
Q 001329 514 EIFYVPQRPY----TAVGTLRDQLIYPLTSDQ---EVEPLTHGG----MVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582 (1099)
Q Consensus 514 ~i~~v~Q~p~----l~~~Ti~eni~~~~~~~~---~~~~~~~~~----i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGG 582 (1099)
.++|||.|.. .+..|+.||+........ ...-.+..+ ..++++++++.. .-| .....+||||
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~---~~~----~~~a~~LSGG 407 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA---PSP----DAPARSLSGG 407 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC---CCC----CcchhhcCCc
Confidence 7999999874 456799999987543211 000122222 334444444431 111 0123589999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
.+||+-+||-|..+|++||+.+||-|||....+.+.+.+. +.|+.|++||-+++.+ .-||+|.||.++
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~G 479 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEG 479 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCC
Confidence 9999999999999999999999999999999999988664 3599999999999976 579999999865
No 405
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=1.3e-19 Score=228.50 Aligned_cols=72 Identities=25% Similarity=0.372 Sum_probs=66.9
Q ss_pred CCcChHHHHHHHHHHHHcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEe
Q 001329 577 DELSLGEQQRLGMARLFYH---KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLD 648 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~---~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1099)
.+|||||+||++|||+|++ +|+++||||||++||+.....+.+.+++ .|.|+|+|+|+++.+..+|+|++|.
T Consensus 827 ~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lg 904 (924)
T TIGR00630 827 TTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLG 904 (924)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEec
Confidence 5899999999999999997 5999999999999999999998887764 4899999999999999999999995
No 406
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.76 E-value=8.4e-18 Score=172.77 Aligned_cols=198 Identities=18% Similarity=0.250 Sum_probs=138.5
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc----cc--cccE
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DL--NKEI 515 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~----~~--r~~i 515 (1099)
+..|++.++.|.|+...|++-|+|++++.|.+..+||.||||||||+|+|+|-.-...|.|.+.|.+. ++ ....
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 45799999999999888999999999999999999999999999999999998877789999998651 10 1112
Q ss_pred EEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhc--CC--CCcccCC-CCCcChHHHHHHHHH
Q 001329 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR--YP--PEKEINW-GDELSLGEQQRLGMA 590 (1099)
Q Consensus 516 ~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~--~p--~~~~~~~-g~~LSGGqrQRlaIA 590 (1099)
.|+--+= ..+.... .+.+-.-|--+.+.+.-++-.++..+ +. .|.+..| -+.+|-|||+||.|+
T Consensus 91 ~YLGgeW-------~~~~~~a----gevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQic 159 (291)
T KOG2355|consen 91 SYLGGEW-------SKTVGIA----GEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQIC 159 (291)
T ss_pred eEecccc-------ccccccc----ccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHH
Confidence 2222110 0000000 00000001112233333333332111 10 1223334 357999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 591 RAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+-|++.=++|+|||-|--||...+..+++.+++ +|.||+..||-.+-++ -..+++.+.++
T Consensus 160 MGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~G 224 (291)
T KOG2355|consen 160 MGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSG 224 (291)
T ss_pred HhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCC
Confidence 999999999999999999999999999988864 5999999999776444 46778877654
No 407
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.74 E-value=1.1e-17 Score=186.68 Aligned_cols=172 Identities=25% Similarity=0.392 Sum_probs=134.2
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCc--------CcCCccEEEeCCCCccccccEEEEecC--CCCCccc
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--------WPLVSGHIAKPGVGSDLNKEIFYVPQR--PYTAVGT 528 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl--------~~p~~G~I~i~g~~~~~r~~i~~v~Q~--p~l~~~T 528 (1099)
.+++|+||++++|+.++|+|+||+||||++++|+|. |.|++|.|.++-.. --+++|-+ |.+-..|
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-----~~a~iPge~Ep~f~~~t 471 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-----VSALIPGEYEPEFGEVT 471 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-----hhhccCcccccccCchh
Confidence 689999999999999999999999999999999986 56899999886421 22355543 3333347
Q ss_pred HHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001329 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1099)
Q Consensus 529 i~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTS 607 (1099)
+.|++.--. -+.....++|.++|+.+- +-+-+. ++||-|||.|..||+++..+|.+++.||--|
T Consensus 472 ilehl~s~t--------GD~~~AveILnraGlsDAvlyRr~f-------~ELStGQKeR~KLAkllaerpn~~~iDEF~A 536 (593)
T COG2401 472 ILEHLRSKT--------GDLNAAVEILNRAGLSDAVLYRRKF-------SELSTGQKERAKLAKLLAERPNVLLIDEFAA 536 (593)
T ss_pred HHHHHhhcc--------CchhHHHHHHHhhccchhhhhhccH-------hhcCcchHHHHHHHHHHhcCCCcEEhhhhhh
Confidence 888775311 122346789999999753 222222 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHH----HHHhcCcEEEEEccChhHHHh--cCEEEEEeCC
Q 001329 608 AVTTDMEERFCA----KVRAMGTSCITISHRPALVAF--HDVVLSLDGE 650 (1099)
Q Consensus 608 aLD~~~~~~l~~----~l~~~g~TvI~ItH~l~~i~~--~D~Il~l~~~ 650 (1099)
.||+.+...+.+ +.++.|.|.++||||.+.... -|.++.+.-+
T Consensus 537 hLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg 585 (593)
T COG2401 537 HLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYG 585 (593)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecc
Confidence 999999887654 445679999999999999874 4888776543
No 408
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.74 E-value=3.6e-18 Score=182.11 Aligned_cols=137 Identities=18% Similarity=0.178 Sum_probs=100.0
Q ss_pred eeeeeeEEEeCCC-EEEEEcCCCCchhHHHHHhc--------CcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHH
Q 001329 460 LVENLTLKVEPGS-NLLITGPNGSGKSSLFRVLG--------GLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR 530 (1099)
Q Consensus 460 vL~~vsl~i~~Ge-~vaIvG~sGsGKSTLl~lL~--------Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~ 530 (1099)
-+.++||++.+|+ +++|+||||||||||+|.|. |.+-|....+ .++|+.|.-.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------~~~~~~~~~~------- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------SLPVFENIFA------- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------cCcCccEEEE-------
Confidence 3567899999996 69999999999999999998 5444432211 1233333210
Q ss_pred HHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 001329 531 DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610 (1099)
Q Consensus 531 eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD 610 (1099)
..+..+.++.. -..+|+||||+..+++++ .+|+++++||||+++|
T Consensus 78 --------------------------~lg~~~~l~~~--------~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD 122 (200)
T cd03280 78 --------------------------DIGDEQSIEQS--------LSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTD 122 (200)
T ss_pred --------------------------ecCchhhhhcC--------cchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCC
Confidence 01111111111 137999999999999884 8999999999999999
Q ss_pred HHHHHHHHH-H---HHhcCcEEEEEccChhHHHhcCEEEEEeC
Q 001329 611 TDMEERFCA-K---VRAMGTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 611 ~~~~~~l~~-~---l~~~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
+.....+.. . +.+.|.|+|++||+.+....+|+++.+++
T Consensus 123 ~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~ 165 (200)
T cd03280 123 PVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVEN 165 (200)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEE
Confidence 998877643 3 33458999999999888888999998875
No 409
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.74 E-value=1.7e-17 Score=173.69 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=65.8
Q ss_pred cChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 579 LSLGEQQRLGMARLFY----HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 579 LSGGqrQRlaIARAL~----~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||||||||++|||+++ .+|+++|+||||++||+.....+.+.+++ .|.|+|+|||+++.+..+|+++.++..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~~ 173 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLFV 173 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEEe
Confidence 9999999999999995 79999999999999999999998887764 368999999999999999999999763
No 410
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.74 E-value=5.1e-18 Score=191.52 Aligned_cols=166 Identities=29% Similarity=0.393 Sum_probs=127.8
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeC-CCC--------------------cccc--ccEEEEecCCCC
Q 001329 468 VEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP-GVG--------------------SDLN--KEIFYVPQRPYT 524 (1099)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~-g~~--------------------~~~r--~~i~~v~Q~p~l 524 (1099)
..+|+.+||+|+||-||||-+|+|+|...|.=|+-.-+ +.+ .++| .++.||--=|-.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 46899999999999999999999999999987764321 100 0111 233344334445
Q ss_pred CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeC
Q 001329 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1099)
Q Consensus 525 ~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDE 604 (1099)
..|+++|-+.-... .....++.++++|...+++-. ++|||||-||+|||.|++++++++++||
T Consensus 177 ~KG~v~elLk~~de---------~g~~devve~l~L~nvl~r~v--------~~LSGGELQr~aIaa~l~rdADvY~FDE 239 (591)
T COG1245 177 VKGKVGELLKKVDE---------RGKFDEVVERLGLENVLDRDV--------SELSGGELQRVAIAAALLRDADVYFFDE 239 (591)
T ss_pred hcchHHHHHHhhhh---------cCcHHHHHHHhcchhhhhhhh--------hhcCchHHHHHHHHHHHhccCCEEEEcC
Confidence 56888887753211 124567888899998888754 4899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEEeCC
Q 001329 605 CTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDGE 650 (1099)
Q Consensus 605 pTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1099)
|||-||...+-..-+.+++ .++++|+|.||+..+.. +|.|.++-++
T Consensus 240 psSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~ 289 (591)
T COG1245 240 PSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGE 289 (591)
T ss_pred CcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecC
Confidence 9999999877666555554 37999999999999875 7999888765
No 411
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.8e-17 Score=185.39 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=72.1
Q ss_pred HhcCCCCcccCCCCCcChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhH
Q 001329 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYH----KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPAL 637 (1099)
Q Consensus 564 ~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~----~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~ 637 (1099)
....|.+....+...|||||+||+++|++++. +|+++|+||||++||+.....+.+.+++. +.|+|+|||++..
T Consensus 156 ~~~~p~e~~~~~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~ 235 (276)
T cd03241 156 FSTNPGEPLKPLAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQV 235 (276)
T ss_pred eecCCCCccchhhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHH
Confidence 33444433333445799999999999997654 99999999999999999999999888753 7899999999998
Q ss_pred HHhcCEEEEEeCC
Q 001329 638 VAFHDVVLSLDGE 650 (1099)
Q Consensus 638 i~~~D~Il~l~~~ 650 (1099)
...+|+++.++++
T Consensus 236 ~~~~d~~~~l~~~ 248 (276)
T cd03241 236 AAMADNHFLVEKE 248 (276)
T ss_pred HHhcCcEEEEEEe
Confidence 8899999999764
No 412
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.69 E-value=7.3e-17 Score=166.41 Aligned_cols=135 Identities=22% Similarity=0.277 Sum_probs=97.7
Q ss_pred eeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEE-EEecCCCCCcccHHHHhccCCCCCC
Q 001329 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF-YVPQRPYTAVGTLRDQLIYPLTSDQ 541 (1099)
Q Consensus 463 ~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~-~v~Q~p~l~~~Ti~eni~~~~~~~~ 541 (1099)
..++.+.++..+.|+|||||||||+++.+....-..+|.+..... .+.+ .+++...
T Consensus 13 ~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~------------------ 69 (162)
T cd03227 13 PNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSG-----VKAGCIVAAVSA------------------ 69 (162)
T ss_pred ccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCc-----ccCCCcceeeEE------------------
Confidence 345555566799999999999999999987665555554432110 0001 0111000
Q ss_pred cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHH
Q 001329 542 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH----KPKFAILDECTSAVTTDMEERF 617 (1099)
Q Consensus 542 ~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~----~P~iliLDEpTSaLD~~~~~~l 617 (1099)
. . +-.. .+||+||+||+++||+|.. +|+++|+|||++++|+.....+
T Consensus 70 -----~---~------------i~~~---------~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l 120 (162)
T cd03227 70 -----E---L------------IFTR---------LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL 120 (162)
T ss_pred -----E---E------------ehhe---------eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 0 0 0000 2599999999999999986 7899999999999999998887
Q ss_pred HHHHHh---cCcEEEEEccChhHHHhcCEEEEEeC
Q 001329 618 CAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 618 ~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
.+.+.+ .+.++|++||+++....+|+++.|+.
T Consensus 121 ~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 121 AEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 776543 26899999999999999999999864
No 413
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.69 E-value=1.8e-16 Score=170.69 Aligned_cols=174 Identities=20% Similarity=0.182 Sum_probs=100.0
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccE---------EEeCCCCccccccEEEEecCCCCCcccHHH
Q 001329 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH---------IAKPGVGSDLNKEIFYVPQRPYTAVGTLRD 531 (1099)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~---------I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~e 531 (1099)
++++.+++.+| ..+|+||||||||||+.+|.-..-..... ..-.|.+ ...|-..++...- .=..+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~---~~~v~~~~~~~~~--~~~~~ 87 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCD---EGTIEIELYGNPG--NIQVD 87 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCC---cEEEEEEEEeCCC--ccccC
Confidence 35566666555 56899999999999999986544211111 0011111 1122222222110 00112
Q ss_pred HhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcc--cCCCCCcChHHHHHHHHHHHH----ccCCCEEEEeCC
Q 001329 532 QLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE--INWGDELSLGEQQRLGMARLF----YHKPKFAILDEC 605 (1099)
Q Consensus 532 ni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~--~~~g~~LSGGqrQRlaIARAL----~~~P~iliLDEp 605 (1099)
|+.+. ...+++.++...-+. +.+.+++.+.+ .....+||||||||+.+|+++ +.+|+++|+|||
T Consensus 88 n~~~~---------~~q~~~~~~~~~~~~-e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP 157 (213)
T cd03277 88 NLCQF---------LPQDRVGEFAKLSPI-ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEI 157 (213)
T ss_pred CceEE---------EchHHHHHHHhCChH-hHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecc
Confidence 22211 122223333222111 22333332221 123458999999999877554 589999999999
Q ss_pred CCCCCHHHHHHHHHHHHh---c-C-cEEEEEccChhHH-HhcC--EEEEEeCC
Q 001329 606 TSAVTTDMEERFCAKVRA---M-G-TSCITISHRPALV-AFHD--VVLSLDGE 650 (1099)
Q Consensus 606 TSaLD~~~~~~l~~~l~~---~-g-~TvI~ItH~l~~i-~~~D--~Il~l~~~ 650 (1099)
|++||+.+...+.+.+++ . | .|+|++||++..+ ..+| +|+++.++
T Consensus 158 ~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g 210 (213)
T cd03277 158 NQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNG 210 (213)
T ss_pred cccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecC
Confidence 999999999998887743 3 4 5799999998544 4554 67777643
No 414
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.64 E-value=1.4e-16 Score=172.46 Aligned_cols=144 Identities=24% Similarity=0.235 Sum_probs=106.6
Q ss_pred CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEE-EEecCCCCCcccHHHHhcc
Q 001329 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF-YVPQRPYTAVGTLRDQLIY 535 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~-~v~Q~p~l~~~Ti~eni~~ 535 (1099)
++.+.+|++++.++|++++|+|||||||||+++.++-. . +-.++| +||.+... .
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~-------~la~~g~~vpa~~~~----------~ 70 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------V-------LMAQIGCFVPCDSAD----------I 70 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------H-------HHHHhCCCcCcccEE----------E
Confidence 45689999999999999999999999999999998721 1 112344 55554311 0
Q ss_pred CCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCC
Q 001329 536 PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF--YHKPKFAILDEC---TSAVT 610 (1099)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL--~~~P~iliLDEp---TSaLD 610 (1099)
+ .+.+++..+++.+... ..+|.|++|++.+++++ +.+|+++||||| |+++|
T Consensus 71 ~-------------~~~~il~~~~l~d~~~-----------~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 71 P-------------IVDCILARVGASDSQL-----------KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred e-------------ccceeEeeeccccchh-----------cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 0 0112344445543321 36999999999999999 899999999999 99999
Q ss_pred HHHHHHHH-HHHHh-cCcEEEEEccChhHHHhcCEEEEEeC
Q 001329 611 TDMEERFC-AKVRA-MGTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 611 ~~~~~~l~-~~l~~-~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
+....... +.+.+ .|.++|++||..+..+.+|++..+++
T Consensus 127 ~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~ 167 (222)
T cd03285 127 GFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKN 167 (222)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEE
Confidence 98776533 55554 58999999998777778898887764
No 415
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.64 E-value=8.5e-16 Score=201.89 Aligned_cols=75 Identities=27% Similarity=0.511 Sum_probs=68.3
Q ss_pred CCcChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 577 DELSLGEQQRLGMARLFYHK---PKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~---P~iliLDEpTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
.+|||||.|||-+|.-|..+ +.++||||||.||++...+.+++.++ +.|-|+|+|.|++++++.||.|+.|-.+
T Consensus 1698 ~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~ 1777 (1809)
T PRK00635 1698 SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPG 1777 (1809)
T ss_pred CccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCC
Confidence 47999999999999999876 79999999999999999999888755 4699999999999999999999999765
Q ss_pred C
Q 001329 651 G 651 (1099)
Q Consensus 651 g 651 (1099)
|
T Consensus 1778 g 1778 (1809)
T PRK00635 1778 S 1778 (1809)
T ss_pred c
Confidence 4
No 416
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=2e-16 Score=176.53 Aligned_cols=185 Identities=18% Similarity=0.274 Sum_probs=129.6
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCc---CcCCccEEEeCCCCccccccEEEEec
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL---WPLVSGHIAKPGVGSDLNKEIFYVPQ 520 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl---~~p~~G~I~i~g~~~~~r~~i~~v~Q 520 (1099)
.|.++|.+++- .++.++.|-||.|-.|.++++|||||-|||||++.|+.- +||. = .+-+|-|
T Consensus 264 DIKiEnF~ISA-~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn-I-------------DvLlCEQ 328 (807)
T KOG0066|consen 264 DIKIENFDISA-QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN-I-------------DVLLCEQ 328 (807)
T ss_pred cceeeeeeeec-ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC-C-------------ceEeeee
Confidence 47888888765 356789999999999999999999999999999999742 2332 1 2344444
Q ss_pred CCCCCcccHHHHh---------------------ccCCCCCC------------cCCcCCHHHHHHHHHhcCChhHHhcC
Q 001329 521 RPYTAVGTLRDQL---------------------IYPLTSDQ------------EVEPLTHGGMVELLKNVDLEYLLDRY 567 (1099)
Q Consensus 521 ~p~l~~~Ti~eni---------------------~~~~~~~~------------~~~~~~~~~i~~~l~~~~l~~~~~~~ 567 (1099)
+...-..|.-+.+ ..+..... ......+.+...+|.-+|.+.-....
T Consensus 329 Evvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~r 408 (807)
T KOG0066|consen 329 EVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQER 408 (807)
T ss_pred eeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcC
Confidence 4332221111111 11110000 00011223344455555555444333
Q ss_pred CCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEE
Q 001329 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLS 646 (1099)
Q Consensus 568 p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~ 646 (1099)
|- ..+|||.|-||++||||+.+|-+|.|||||++||-...-++-+.|+.-.+|.++||||-+.+. .|..|+-
T Consensus 409 Pt-------~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIH 481 (807)
T KOG0066|consen 409 PT-------TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIH 481 (807)
T ss_pred Cc-------cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhh
Confidence 42 479999999999999999999999999999999999988888888878899999999999886 5888888
Q ss_pred EeCC
Q 001329 647 LDGE 650 (1099)
Q Consensus 647 l~~~ 650 (1099)
+|+.
T Consensus 482 LD~q 485 (807)
T KOG0066|consen 482 LDNQ 485 (807)
T ss_pred hhhh
Confidence 8864
No 417
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.63 E-value=1.8e-15 Score=181.25 Aligned_cols=75 Identities=28% Similarity=0.405 Sum_probs=68.0
Q ss_pred CCcChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 577 DELSLGEQQRLGMARLFYHKP---KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P---~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
.+|||||-|||-+|.-|.++. -++||||||.||-.+-.+++++.+.+ .|-|||+|.|++++++.||.|+.|-.+
T Consensus 821 tTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPe 900 (935)
T COG0178 821 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPE 900 (935)
T ss_pred ccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCC
Confidence 589999999999999999887 99999999999999988888877654 599999999999999999999999654
Q ss_pred C
Q 001329 651 G 651 (1099)
Q Consensus 651 g 651 (1099)
|
T Consensus 901 G 901 (935)
T COG0178 901 G 901 (935)
T ss_pred C
Confidence 3
No 418
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.62 E-value=1.6e-12 Score=140.79 Aligned_cols=216 Identities=17% Similarity=0.118 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001329 110 LVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFE 189 (1099)
Q Consensus 110 ~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~ 189 (1099)
.+++.++...++...|.+.+.+++.+...+.+..........+ .++...+.....+...+...++..++..++++++++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (275)
T PF00664_consen 4 AILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFL-LIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFE 82 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666788899999888655443311111111111 111111111222222333445555577788889999
Q ss_pred hhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 001329 190 NMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNF 268 (1099)
Q Consensus 190 ~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~~~~l~l~il~~~~~~~~i~~~~ 268 (1099)
+..+.|.+++++. .++..+|+++|++.+.+.+...+...+..++..+ ....++++.+|.+++++++..|+...+...+
T Consensus 83 ~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 83 KLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISII-FSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhh-hhhhcccccccccccccchhhhhhHhhhhhh
Confidence 9999999998764 5689999999999988877776666665554332 2344566789999999988888888888889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Q 001329 269 SPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVV 327 (1099)
Q Consensus 269 ~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~ 327 (1099)
.++..+..++.++..++......+..+++++||.|+.|+.+.+++++..++..+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 220 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKY 220 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888999999999999999999888877777766554443
No 419
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.60 E-value=1.6e-15 Score=190.23 Aligned_cols=190 Identities=21% Similarity=0.321 Sum_probs=148.8
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC---CccEEEeCCCC-cc--ccccEEEEecCC-CCCcccHH
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL---VSGHIAKPGVG-SD--LNKEIFYVPQRP-YTAVGTLR 530 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p---~~G~I~i~g~~-~~--~r~~i~~v~Q~p-~l~~~Ti~ 530 (1099)
..+++|+|.-++||+.+.+.||.|||||||+++++|-.+- ..|+|.+||.+ ++ -++.++|++|+. +.+..||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4699999999999999999999999999999999997754 35799999987 21 157899999866 45678999
Q ss_pred HHhccCCCCCCc---CCcCCH-H----HHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEE
Q 001329 531 DQLIYPLTSDQE---VEPLTH-G----GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602 (1099)
Q Consensus 531 eni~~~~~~~~~---~~~~~~-~----~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliL 602 (1099)
|-+.|....... .++.++ + ....+++.+||++-.+....+ +-....|||||.||++|-+++.+|++++.
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGn---d~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGN---DMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecc---cccccccCcccceeeeeeeeecCcceeee
Confidence 999886443211 111222 2 234678889998755544321 12346999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CcEEEEEccChh--HHHhcCEEEEEeCC
Q 001329 603 DECTSAVTTDMEERFCAKVRAM----GTSCITISHRPA--LVAFHDVVLSLDGE 650 (1099)
Q Consensus 603 DEpTSaLD~~~~~~l~~~l~~~----g~TvI~ItH~l~--~i~~~D~Il~l~~~ 650 (1099)
||+|.|||..+.-++.+.+++. +.|.++.=|..+ ...-.|.|++|.++
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG 338 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEG 338 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeecc
Confidence 9999999999999999888763 888888888765 44557999999764
No 420
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.59 E-value=1.5e-15 Score=161.81 Aligned_cols=136 Identities=18% Similarity=0.191 Sum_probs=90.4
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCC-cccHHHHhccC
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTA-VGTLRDQLIYP 536 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~-~~Ti~eni~~~ 536 (1099)
+++++|++++. |++++|+||||||||||+|+|+|.... ...|.+ +. .-.+++|...++ ..|+.||+..+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l-----~~~G~~--v~-a~~~~~q~~~l~~~~~~~d~l~~~ 83 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVIL-----AQAGAP--VC-ASSFELPPVKIFTSIRVSDDLRDG 83 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHH-----HHcCCE--Ee-cCccCcccceEEEeccchhccccc
Confidence 45778777765 799999999999999999999875531 112321 00 013566743333 46889998776
Q ss_pred CCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001329 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1099)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~ 616 (1099)
.... ....+++.++++.+++ .+|+++|+||||+++|+.....
T Consensus 84 ~s~~----~~e~~~~~~iL~~~~~----------------------------------~~p~llllDEp~~glD~~~~~~ 125 (199)
T cd03283 84 ISYF----YAELRRLKEIVEKAKK----------------------------------GEPVLFLLDEIFKGTNSRERQA 125 (199)
T ss_pred cChH----HHHHHHHHHHHHhccC----------------------------------CCCeEEEEecccCCCCHHHHHH
Confidence 4321 0011233344433321 6999999999999999987765
Q ss_pred HH----HHHHhcCcEEEEEccChhHHHhc
Q 001329 617 FC----AKVRAMGTSCITISHRPALVAFH 641 (1099)
Q Consensus 617 l~----~~l~~~g~TvI~ItH~l~~i~~~ 641 (1099)
+. +.+.+.|.|+|++||+++.+...
T Consensus 126 l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 126 ASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 43 33445689999999999987643
No 421
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.56 E-value=3e-15 Score=159.83 Aligned_cols=140 Identities=19% Similarity=0.209 Sum_probs=90.6
Q ss_pred eeeEEEeCCCEEEEEcCCCCchhHHHHHhcC-cCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCC
Q 001329 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGG-LWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ 541 (1099)
Q Consensus 463 ~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~G-l~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~ 541 (1099)
..|+++.+|++++|+||||||||||+|+|++ .+.+..|... +.. +..+++..|. ....
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-~~~----~~~i~~~dqi------------~~~~---- 79 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-PAE----SASIPLVDRI------------FTRI---- 79 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-ccc----ccccCCcCEE------------EEEe----
Confidence 3456666899999999999999999999994 3333333221 110 1122222211 1000
Q ss_pred cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH---
Q 001329 542 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC--- 618 (1099)
Q Consensus 542 ~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~--- 618 (1099)
+..+-+. .+-+.+|++++| +..+.+++.+|+++|+||||+++|+.....+.
T Consensus 80 -----------------~~~d~i~--------~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~l 133 (202)
T cd03243 80 -----------------GAEDSIS--------DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAV 133 (202)
T ss_pred -----------------cCccccc--------CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHH
Confidence 0000000 111357777766 66667888999999999999999998776553
Q ss_pred -HHHHhcCcEEEEEccChhHHHhcCEEEEEeC
Q 001329 619 -AKVRAMGTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 619 -~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
+.+.+.+.++|++||+.+.+..++++..++.
T Consensus 134 l~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~ 165 (202)
T cd03243 134 LEHLLEKGCRTLFATHFHELADLPEQVPGVKN 165 (202)
T ss_pred HHHHHhcCCeEEEECChHHHHHHhhcCCCeEE
Confidence 3344568999999999999998887666653
No 422
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=3e-14 Score=159.04 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=59.5
Q ss_pred CCcChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhc---CEE
Q 001329 577 DELSLGEQQRLGMARLFY---------HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFH---DVV 644 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~---------~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~---D~I 644 (1099)
..+|+||||+++|||+|+ .+|+++++||||++||+.....+.+.+++.+.++|+++|+......+ +++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~~~~~~~~~i 261 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFDALWLRRAQI 261 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhccchhccCccE
Confidence 358999999999999985 79999999999999999999999999987765555555554444444 678
Q ss_pred EEEeCC
Q 001329 645 LSLDGE 650 (1099)
Q Consensus 645 l~l~~~ 650 (1099)
+.++++
T Consensus 262 ~~l~~g 267 (270)
T cd03242 262 FRVDAG 267 (270)
T ss_pred EEEeCc
Confidence 877653
No 423
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.50 E-value=4.5e-14 Score=151.07 Aligned_cols=138 Identities=17% Similarity=0.165 Sum_probs=94.9
Q ss_pred CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEE-EEecCCCCCcccHHHHhcc
Q 001329 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF-YVPQRPYTAVGTLRDQLIY 535 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~-~v~Q~p~l~~~Ti~eni~~ 535 (1099)
++.+.+|+++++++|+.++|+|||||||||++|.++++.- ..++| +||-.. ..-++.|+|..
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~G~~vpa~~--~~l~~~d~I~~ 77 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI---------------MAQIGCFVPAEY--ATLPIFNRLLS 77 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH---------------HHHcCCCcchhh--cCccChhheeE
Confidence 4578999999999999999999999999999999987641 11222 222111 11244455532
Q ss_pred CCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001329 536 PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615 (1099)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~ 615 (1099)
.. +..+-.++ ..+.+|+|++|+ ..+-+++.+|+++|+|||++++|+....
T Consensus 78 ~~---------------------~~~d~~~~--------~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~ 127 (204)
T cd03282 78 RL---------------------SNDDSMER--------NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGF 127 (204)
T ss_pred ec---------------------CCccccch--------hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHH
Confidence 21 11110111 124799999976 4556678999999999999999996543
Q ss_pred H----HHHHHHhcCcEEEEEccChhHHHhc
Q 001329 616 R----FCAKVRAMGTSCITISHRPALVAFH 641 (1099)
Q Consensus 616 ~----l~~~l~~~g~TvI~ItH~l~~i~~~ 641 (1099)
. +.+.+.+.|.++|++||+.+.+...
T Consensus 128 ~l~~~il~~l~~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 128 AISLAILECLIKKESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 3 4445556699999999999987643
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.49 E-value=1.2e-13 Score=155.12 Aligned_cols=181 Identities=20% Similarity=0.317 Sum_probs=137.6
Q ss_pred EEcCCCCceeeeeeEEEeCCC-----EEEEEcCCCCchhHHHHHhcCcCcCCcc-EEEeCCCCccccccEEEEecCCC-C
Q 001329 452 VVTPTGNVLVENLTLKVEPGS-----NLLITGPNGSGKSSLFRVLGGLWPLVSG-HIAKPGVGSDLNKEIFYVPQRPY-T 524 (1099)
Q Consensus 452 ~~y~~~~~vL~~vsl~i~~Ge-----~vaIvG~sGsGKSTLl~lL~Gl~~p~~G-~I~i~g~~~~~r~~i~~v~Q~p~-l 524 (1099)
+.||+-+..+.+..|.|+.|+ ++..+|+||.||||++++++|..+|++| +|-. -.++|=||.-. -
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~--------lnVSykpqkispK 414 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV--------LNVSYKPQKISPK 414 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc--------cceeccccccCcc
Confidence 457776778899999999885 6889999999999999999999999876 3321 14788888643 3
Q ss_pred CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeC
Q 001329 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1099)
Q Consensus 525 ~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDE 604 (1099)
+.+|+|+-+.--.... -....-+.+.++-+.+++.+++.. .+|||||+||+|+|-+|=+.+++.+.||
T Consensus 415 ~~~tvR~ll~~kIr~a----y~~pqF~~dvmkpL~ie~i~dqev--------q~lSggelQRval~KOGGKpAdvYliDE 482 (592)
T KOG0063|consen 415 REGTVRQLLHTKIRDA----YMHPQFVNDVMKPLQIENIIDQEV--------QGLSGGELQRVALALCLGKPADVYLIDE 482 (592)
T ss_pred ccchHHHHHHHHhHhh----hcCHHHHHhhhhhhhHHHHHhHHh--------hcCCchhhHHHHHHHhcCCCCceEEecC
Confidence 4678877553211110 122334566777777777777644 3799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHH----HHHhcCcEEEEEccChhHHHh-cCEEEEEeCCCc
Q 001329 605 CTSAVTTDMEERFCA----KVRAMGTSCITISHRPALVAF-HDVVLSLDGEGE 652 (1099)
Q Consensus 605 pTSaLD~~~~~~l~~----~l~~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~ 652 (1099)
|.+-||.+.+..--+ .+-...+|-.+|.||.-...+ +||+++.++..+
T Consensus 483 psAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps 535 (592)
T KOG0063|consen 483 PSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPS 535 (592)
T ss_pred chhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcc
Confidence 999999987755333 333458899999999887754 899999997543
No 425
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.43 E-value=2.2e-13 Score=149.65 Aligned_cols=173 Identities=16% Similarity=0.156 Sum_probs=109.5
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHh----ccCCCCCC
Q 001329 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQL----IYPLTSDQ 541 (1099)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni----~~~~~~~~ 541 (1099)
+.+.+||+++|+||+|||||||++.|.+..+...+.+. .+.++-+++..-...+.+.+ ........
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~----------~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~ 80 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVY----------LIVLLIDERPEEVTDMQRSVKGEVIASTFDEP 80 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeE----------EEEEEccCCCccHHHHHHHhccEEEEecCCCC
Confidence 46889999999999999999999999998876533322 12233343322111222222 00000000
Q ss_pred cCCc-CCHHHHHHHHH---hcCCh-----hHHhcCCCCcc---cCCCCCcChHH--------HHHHHHHHHHccCCCEEE
Q 001329 542 EVEP-LTHGGMVELLK---NVDLE-----YLLDRYPPEKE---INWGDELSLGE--------QQRLGMARLFYHKPKFAI 601 (1099)
Q Consensus 542 ~~~~-~~~~~i~~~l~---~~~l~-----~~~~~~p~~~~---~~~g~~LSGGq--------rQRlaIARAL~~~P~ili 601 (1099)
.... .....+.+.++ ..|-. |-+.+++.... ...|..+|||| +||+++||++.++|+|.+
T Consensus 81 ~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~ 160 (249)
T cd01128 81 PERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI 160 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence 0000 00001111111 12211 22344443221 23578899999 999999999999999999
Q ss_pred EeCCCCCCCHHHHHH--HHHHHHhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 602 LDECTSAVTTDMEER--FCAKVRAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 602 LDEpTSaLD~~~~~~--l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
| ||+.+|+.++.. +.+.++..+.|.|++||+++...++|.|.+++.+
T Consensus 161 l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~ 209 (249)
T cd01128 161 I--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSG 209 (249)
T ss_pred e--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCC
Confidence 9 999999655543 4556666789999999999999999999999865
No 426
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=4.5e-13 Score=169.78 Aligned_cols=87 Identities=28% Similarity=0.426 Sum_probs=74.8
Q ss_pred HHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcE
Q 001329 554 LLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP--KFAILDECTSAVTTDMEERFCAKVRA---MGTS 627 (1099)
Q Consensus 554 ~l~~~~l~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P--~iliLDEpTSaLD~~~~~~l~~~l~~---~g~T 627 (1099)
.+..+||.++ +++.+ .+|||||+|||+|||+|..+| +++||||||++||+.....+.+.+++ .|.|
T Consensus 470 ~L~~vgL~~l~l~r~~--------~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~T 541 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAA--------GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNT 541 (924)
T ss_pred hHhhccccccccCCCc--------CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 4566676554 44443 489999999999999999986 89999999999999999998877654 5899
Q ss_pred EEEEccChhHHHhcCEEEEEe
Q 001329 628 CITISHRPALVAFHDVVLSLD 648 (1099)
Q Consensus 628 vI~ItH~l~~i~~~D~Il~l~ 648 (1099)
+|+|+||++.+..||+|++|.
T Consensus 542 VIvVeHd~~~i~~aD~vi~Lg 562 (924)
T TIGR00630 542 VIVVEHDEETIRAADYVIDIG 562 (924)
T ss_pred EEEEECCHHHHhhCCEEEEec
Confidence 999999999999999999995
No 427
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.41 E-value=5e-13 Score=144.37 Aligned_cols=136 Identities=23% Similarity=0.231 Sum_probs=90.4
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-CccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccC
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1099)
+.+.+|++++.++ ++++|+|||||||||++|.+++..-. ..|.. ++. .+..++++.|- ....++.|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~-vp~----~~~~i~~~~~i--~~~~~~~~----- 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSF-VPA----SKAEIGVVDRI--FTRIGASD----- 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCe-ecc----ccceecceeeE--eccCCchh-----
Confidence 4588999999987 99999999999999999999864321 22211 111 12345555431 01112222
Q ss_pred CCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH----HHHHHHH--ccCCCEEEEeCC---CC
Q 001329 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR----LGMARLF--YHKPKFAILDEC---TS 607 (1099)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQR----laIARAL--~~~P~iliLDEp---TS 607 (1099)
++|.||.+. ..+++++ +.+|+++||||| |+
T Consensus 85 -----------------------------------------~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 85 -----------------------------------------DLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred -----------------------------------------hhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 344444432 3455555 469999999999 99
Q ss_pred CCCHHHH-HHHHHHHHhc-CcEEEEEccChhHHHhcCEEEEE
Q 001329 608 AVTTDME-ERFCAKVRAM-GTSCITISHRPALVAFHDVVLSL 647 (1099)
Q Consensus 608 aLD~~~~-~~l~~~l~~~-g~TvI~ItH~l~~i~~~D~Il~l 647 (1099)
++|.... ..+.+.+.+. +.|+|++||+.++...+|++..+
T Consensus 124 ~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v 165 (216)
T cd03284 124 TYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRV 165 (216)
T ss_pred hHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCe
Confidence 9998663 4566666666 89999999998877777765434
No 428
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.40 E-value=4.7e-13 Score=169.87 Aligned_cols=87 Identities=25% Similarity=0.416 Sum_probs=75.7
Q ss_pred HHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHH---hcCcE
Q 001329 554 LLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP--KFAILDECTSAVTTDMEERFCAKVR---AMGTS 627 (1099)
Q Consensus 554 ~l~~~~l~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P--~iliLDEpTSaLD~~~~~~l~~~l~---~~g~T 627 (1099)
.++.+||.++ .++.+ .+|||||+|||+|||||..+| +++||||||++||+.....+.+.++ +.|.|
T Consensus 472 ~L~~vGL~~l~l~r~~--------~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~T 543 (943)
T PRK00349 472 FLVDVGLDYLTLSRSA--------GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNT 543 (943)
T ss_pred HhhccccCCCCCCCch--------hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 5677777654 45544 489999999999999999997 9999999999999999999888765 45999
Q ss_pred EEEEccChhHHHhcCEEEEEe
Q 001329 628 CITISHRPALVAFHDVVLSLD 648 (1099)
Q Consensus 628 vI~ItH~l~~i~~~D~Il~l~ 648 (1099)
||+|+||++.+..||+|++|.
T Consensus 544 VIvVeH~~~~i~~aD~vi~Lg 564 (943)
T PRK00349 544 LIVVEHDEDTIRAADYIVDIG 564 (943)
T ss_pred EEEEeCCHHHHHhCCEEEEec
Confidence 999999999999999999994
No 429
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.38 E-value=4.7e-13 Score=127.67 Aligned_cols=72 Identities=21% Similarity=0.133 Sum_probs=62.9
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHH
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRD 531 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~e 531 (1099)
.++|++++|++++||.++|+||||||||||++++. +|++.++|.+ .+.++.++++||+ +|.+||+|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 46899999999999999999999999999999986 7999999975 2345567788887 89999999
Q ss_pred HhccCC
Q 001329 532 QLIYPL 537 (1099)
Q Consensus 532 ni~~~~ 537 (1099)
||.++.
T Consensus 74 Ni~~~~ 79 (107)
T cd00820 74 NIFLIT 79 (107)
T ss_pred hceeee
Confidence 999854
No 430
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.36 E-value=2.2e-12 Score=143.42 Aligned_cols=126 Identities=21% Similarity=0.284 Sum_probs=83.3
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~ 544 (1099)
..++|+||||||||||+++|+|+++|++|+|.++|.+ .++...++++||+......++.||
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~------------ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG------------ 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc------------
Confidence 6899999999999999999999999999999999954 122233445555432111111111
Q ss_pred cCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 001329 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 624 (1099)
Q Consensus 545 ~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~ 624 (1099)
.| . ..|+ .+++|+ .+|+++|+|||++. +....+.+.+. .
T Consensus 180 ----------------------~~---------k-~~~~---~~~i~~--~~P~villDE~~~~---e~~~~l~~~~~-~ 218 (270)
T TIGR02858 180 ----------------------CP---------K-AEGM---MMLIRS--MSPDVIVVDEIGRE---EDVEALLEALH-A 218 (270)
T ss_pred ----------------------ch---------H-HHHH---HHHHHh--CCCCEEEEeCCCcH---HHHHHHHHHHh-C
Confidence 11 0 1121 233333 69999999999852 33334444443 5
Q ss_pred CcEEEEEccChhH--H------------HhcCEEEEEeCC
Q 001329 625 GTSCITISHRPAL--V------------AFHDVVLSLDGE 650 (1099)
Q Consensus 625 g~TvI~ItH~l~~--i------------~~~D~Il~l~~~ 650 (1099)
|.|+|+++|+.+. + ..+|++++|+++
T Consensus 219 G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~ 258 (270)
T TIGR02858 219 GVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRR 258 (270)
T ss_pred CCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecC
Confidence 9999999997665 3 347999999864
No 431
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.35 E-value=3.8e-12 Score=137.54 Aligned_cols=172 Identities=24% Similarity=0.346 Sum_probs=100.5
Q ss_pred eeeeEEEeCCCEEEEEcCCCCchhHHHHHhc-CcC--cCCccE-------EEeCCCC-ccccccEEEEecCCCCC----c
Q 001329 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLG-GLW--PLVSGH-------IAKPGVG-SDLNKEIFYVPQRPYTA----V 526 (1099)
Q Consensus 462 ~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~-Gl~--~p~~G~-------I~i~g~~-~~~r~~i~~v~Q~p~l~----~ 526 (1099)
+...+.+.+ ....|+|||||||||++.+|. .|- +..+.+ |...+.+ ......|...++++.-. .
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 455666654 599999999999999999992 332 221111 1110111 11123355555444211 0
Q ss_pred --ccHHHHhccCCCCC-C-cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH----ccCCC
Q 001329 527 --GTLRDQLIYPLTSD-Q-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF----YHKPK 598 (1099)
Q Consensus 527 --~Ti~eni~~~~~~~-~-~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL----~~~P~ 598 (1099)
..+...+.-..... . ........++.+.+...++.. ..||||||-+++||--| +.+++
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~--------------~~lSgGEk~~~~Lal~lA~~~~~~~p 160 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISP--------------EFLSGGEKSLVALALLLALQRYKPSP 160 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTT--------------TGS-HHHHHHHHHHHHHHHHTCS--S
T ss_pred cccccccccccccccccccccccccccccccccccccccc--------------cccccccccccccccccccccccccc
Confidence 01111111000000 0 011234456666666655532 16999999999998665 46789
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEe
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1099)
++|||||.++||......+.+.+++. +.-+|++||+......+|+.+.+.
T Consensus 161 ~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 161 FLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp EEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999875 488999999999999999988764
No 432
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.35 E-value=6.3e-12 Score=157.85 Aligned_cols=145 Identities=18% Similarity=0.224 Sum_probs=98.2
Q ss_pred cEEEEeeEEEcCCCCceeee-----eeEEEeCC-CEEEEEcCCCCchhHHHHHhcCc-CcCCccEEEeCCCCccccccEE
Q 001329 444 YIEFSGVKVVTPTGNVLVEN-----LTLKVEPG-SNLLITGPNGSGKSSLFRVLGGL-WPLVSGHIAKPGVGSDLNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~-----vsl~i~~G-e~vaIvG~sGsGKSTLl~lL~Gl-~~p~~G~I~i~g~~~~~r~~i~ 516 (1099)
.+.++++.. |++++ +|+++.+| ++++|+||||+|||||+|+|+|. +.+..|.
T Consensus 295 ~i~l~~~rh------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------------- 353 (771)
T TIGR01069 295 KIILENARH------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------------- 353 (771)
T ss_pred CEEEccccC------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------------
Confidence 567766653 44443 78889888 99999999999999999999997 4555551
Q ss_pred EEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001329 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1099)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1099)
+||..+... ..+.+++... ..+ .+-+... -+++|+|++|+..|++++ .+
T Consensus 354 ~Vpa~~~~~-~~~~d~i~~~---------i~~------------~~si~~~--------LStfS~~m~~~~~il~~~-~~ 402 (771)
T TIGR01069 354 PIPANEHSE-IPYFEEIFAD---------IGD------------EQSIEQN--------LSTFSGHMKNISAILSKT-TE 402 (771)
T ss_pred CccCCcccc-ccchhheeee---------cCh------------HhHHhhh--------hhHHHHHHHHHHHHHHhc-CC
Confidence 333332100 0112222110 000 0001111 147999999999999887 78
Q ss_pred CCEEEEeCCCCCCCHHHHHHHH----HHHHhcCcEEEEEccChhHHHh
Q 001329 597 PKFAILDECTSAVTTDMEERFC----AKVRAMGTSCITISHRPALVAF 640 (1099)
Q Consensus 597 P~iliLDEpTSaLD~~~~~~l~----~~l~~~g~TvI~ItH~l~~i~~ 640 (1099)
|+++|+|||++|+|+.....+. +.+.+.|.++|++||+.++...
T Consensus 403 ~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 403 NSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred CcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 9999999999999998887663 3344569999999999887543
No 433
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.31 E-value=1.1e-12 Score=138.24 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=48.5
Q ss_pred CCcChHHHHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHH----HHHHh-cCcEEEEEccChhHHHhcCE
Q 001329 577 DELSLGEQQRLGMARLFYH--KPKFAILDECTSAVTTDMEERFC----AKVRA-MGTSCITISHRPALVAFHDV 643 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~--~P~iliLDEpTSaLD~~~~~~l~----~~l~~-~g~TvI~ItH~l~~i~~~D~ 643 (1099)
+++|+|++| +++++.. +|+++|+|||++++|+.....+. +.+.+ .+.++|++||+.+..+.+|+
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 468888887 4444444 99999999999999998665543 33334 48899999999987776653
No 434
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=99.29 E-value=8e-09 Score=114.58 Aligned_cols=280 Identities=14% Similarity=0.222 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 108 LALVGIVVLRTALSNRLAKVQGFLFRAAFLR-------RVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180 (1099)
Q Consensus 108 l~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~-------~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~ 180 (1099)
+.++.+....+-+++.++.|.+.|+|.++.. ....|+..+..++.+.++..++..+..|+.....-+||..++
T Consensus 13 ~~il~~~~~~v~v~V~iN~W~~~Fyd~iQ~al~~~~~~t~~ef~~~~~~f~~ia~~~v~~~v~~~ff~shyiFrWR~Am~ 92 (315)
T PF05992_consen 13 ALILFVTWFQVQVSVAINEWYGPFYDLIQKALSKPGSVTIDEFYAQILNFLWIAMIYVVLAVLNSFFVSHYIFRWRTAMN 92 (315)
T ss_pred HHHHHHHHHHHheeeeehHhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455666667778999999999988754 234566666655555555555667778888888999999999
Q ss_pred HHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-------h-hhh
Q 001329 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS---Y-------A-SPK 249 (1099)
Q Consensus 181 ~~l~~~~f~~l~~~~~~~~~~~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~---~-------~-~~~ 249 (1099)
+...+.|= ++ +++....||+.+|+.++++.+.++...++.+++..+.|.-.|+. . - .|.
T Consensus 93 ~yY~~~W~-~~---------r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~simtliaFlPiL~~lS~~V~~lp~~g~i~~ 162 (315)
T PF05992_consen 93 EYYMSHWP-KL---------RHIEGASQRIQEDTMRFAKIMEDLGVSFIRSIMTLIAFLPILWELSSHVSELPFFGEIPH 162 (315)
T ss_pred HHHHHHHH-Hh---------ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcccCCCch
Confidence 88766652 22 22444679999999999999988888888888777766433321 1 1 122
Q ss_pred HHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Q 001329 250 YVFWI-LAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVL 328 (1099)
Q Consensus 250 l~l~i-l~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~ 328 (1099)
..++. ++...+..++....|.++..+..+.|+.||++|..+..-.++.+. ++ ...+.+.|.++.+++.+.-
T Consensus 163 ~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRKeLV~gED~~~r-----a~---~~tl~eLF~~Vr~Ny~rly 234 (315)
T PF05992_consen 163 SLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRKELVYGEDDANR-----AQ---PPTLRELFSNVRRNYFRLY 234 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHHHHHhcCccccc-----CC---chhHHHHHHHHHHHHHHHH
Confidence 22222 333334445566678888888899999999999865443333211 11 2235577777777766554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 329 HDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSG 408 (1099)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~~~~ 408 (1099)
.....+++.......+ ...++.+++.+.++.|.+ |+|.... ....+.....++..+...+..+.++.+
T Consensus 235 ~hy~yfni~~~~y~q~-~~i~~~i~l~Psi~ag~i-----TLG~~~Q------i~~aF~~V~~sfq~lv~~W~tivEL~S 302 (315)
T PF05992_consen 235 FHYMYFNIARISYLQF-DVIFPYIILIPSIVAGAI-----TLGVLQQ------ISNAFGQVRSSFQYLVNSWTTIVELRS 302 (315)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccc-----cHHHHHH------HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3334444444333222 223445555555555544 7774322 223345555677777888888888988
Q ss_pred HHHHHHHHH
Q 001329 409 YADRIHELM 417 (1099)
Q Consensus 409 ~~~Ri~ell 417 (1099)
..+|+.++-
T Consensus 303 i~kRL~~FE 311 (315)
T PF05992_consen 303 IYKRLRAFE 311 (315)
T ss_pred HHHHHHHHH
Confidence 889987763
No 435
>PRK00064 recF recombination protein F; Reviewed
Probab=99.28 E-value=4e-11 Score=139.29 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=63.0
Q ss_pred CCcChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHh---cCEE
Q 001329 577 DELSLGEQQRLGMARLFY---------HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAF---HDVV 644 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~---------~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~---~D~I 644 (1099)
..+|.||||++++|++++ .+|++++||||+++||+..+..+.+.+.+.+..++++||+...+.. .+++
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~~i 351 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENAKI 351 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccCcE
Confidence 469999999999999985 7999999999999999999999999987766789999998776542 3567
Q ss_pred EEEeCC
Q 001329 645 LSLDGE 650 (1099)
Q Consensus 645 l~l~~~ 650 (1099)
+.++++
T Consensus 352 ~~v~~G 357 (361)
T PRK00064 352 FHVEQG 357 (361)
T ss_pred EEEeCC
Confidence 777653
No 436
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.26 E-value=2.4e-11 Score=131.12 Aligned_cols=132 Identities=15% Similarity=0.130 Sum_probs=85.9
Q ss_pred eeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcC--cCcCCccEEEeCCCCccccccEEEEecCCCCCc--ccHHHHhcc
Q 001329 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG--LWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAV--GTLRDQLIY 535 (1099)
Q Consensus 460 vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~G--l~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~--~Ti~eni~~ 535 (1099)
+=+|+++.=..+.+++|+||||+|||||+|.++. +. +..|...... ...+++..|...-.. .++.+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----~~~~~~~d~i~~~l~~~~si~~---- 87 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----SATIGLVDKIFTRMSSRESVSS---- 87 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----CcEEeeeeeeeeeeCCccChhh----
Confidence 4455554322237899999999999999999983 33 5566654322 135677766531110 01100
Q ss_pred CCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001329 536 PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615 (1099)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~ 615 (1099)
++..| .-+-||+++|++++.+|+++|+|||++++|+....
T Consensus 88 -----------------------~~S~f-----------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~ 127 (213)
T cd03281 88 -----------------------GQSAF-----------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGA 127 (213)
T ss_pred -----------------------ccchH-----------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHH
Confidence 00111 34679999999999999999999999999986433
Q ss_pred H----HHHHHHhc---CcEEEEEccChhHHHhc
Q 001329 616 R----FCAKVRAM---GTSCITISHRPALVAFH 641 (1099)
Q Consensus 616 ~----l~~~l~~~---g~TvI~ItH~l~~i~~~ 641 (1099)
. +.+.+.+. +.++|++||+.+.+...
T Consensus 128 ~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 128 GLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 2 22333333 35899999999988654
No 437
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.22 E-value=8.6e-12 Score=140.52 Aligned_cols=165 Identities=27% Similarity=0.367 Sum_probs=117.2
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCC--C-------------------cccc--ccEEEEecCCCCC
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV--G-------------------SDLN--KEIFYVPQRPYTA 525 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~--~-------------------~~~r--~~i~~v~Q~p~l~ 525 (1099)
.+|+..++||.||-||||-+++++|-.+|.-|.-.-+.. + .+++ -+..||.|-|-..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 489999999999999999999999999998775432210 0 0011 1122333333233
Q ss_pred cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCC
Q 001329 526 VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605 (1099)
Q Consensus 526 ~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEp 605 (1099)
.+++++.+.--. ..+...++++..+|....++-. .+|||||-||.+||.+.+++.|+.++|||
T Consensus 178 k~~v~~~l~~~~---------~r~~~~~~~~~~~L~~~~~re~--------~~lsggelqrfaia~~~vq~advyMFDEp 240 (592)
T KOG0063|consen 178 KGTVGSLLDRKD---------ERDNKEEVCDQLDLNNLLDREV--------EQLSGGELQRFAIAMVCVQKADVYMFDEP 240 (592)
T ss_pred HHHHHHHHHHHh---------hcccHHHHHHHHHHhhHHHhhh--------hhcccchhhhhhhhhhhhhhcceeEecCC
Confidence 345555443211 1123455667777777666643 37999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEEeCC
Q 001329 606 TSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDGE 650 (1099)
Q Consensus 606 TSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1099)
.|-||...+..-...++. .+.=+|+|.||++++.+ .|-|..+-+-
T Consensus 241 SsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYGv 289 (592)
T KOG0063|consen 241 SSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGV 289 (592)
T ss_pred cccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEecC
Confidence 999999888765555544 47889999999999875 6888888764
No 438
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.21 E-value=4.9e-11 Score=159.14 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=92.2
Q ss_pred CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCC-cccCCCCCcChHHHH------HHHHHHHHccC
Q 001329 524 TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE-KEINWGDELSLGEQQ------RLGMARLFYHK 596 (1099)
Q Consensus 524 l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~-~~~~~g~~LSGGqrQ------RlaIARAL~~~ 596 (1099)
.|.||+.|||.+ .+. .+++ .++++.++..+|+..+|.+ +.......||||||| |++||||++.+
T Consensus 1153 ~~~~~~~~~i~~-~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~ 1223 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSD------ADEN--VSASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLN 1223 (1311)
T ss_pred HcCccHHHHhhc-CCC------CChH--HHHHHHcCchHHHhccCCCCeecCCCCCCchhhhhHhhHhHHHHHHHHHhcC
Confidence 468999999998 432 2333 5778888999998888765 333434589999999 99999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh--------cCcEEEEEccChhHHH------hcCEEEEEe
Q 001329 597 PKFAILDECTSAVTTDMEERFCAKVRA--------MGTSCITISHRPALVA------FHDVVLSLD 648 (1099)
Q Consensus 597 P~iliLDEpTSaLD~~~~~~l~~~l~~--------~g~TvI~ItH~l~~i~------~~D~Il~l~ 648 (1099)
|++++|||||++||+.+...+.+.+.. .|.|+|+|||++..+. .+|+.+.+.
T Consensus 1224 ~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1224 CGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred CCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 999999999999999999887765532 3789999999999875 356666554
No 439
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.13 E-value=1.6e-10 Score=125.29 Aligned_cols=137 Identities=17% Similarity=0.164 Sum_probs=86.3
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcC-cCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccC
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG-LWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~G-l~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1099)
+.+.+|+++.+++|++++|+||||+||||+++.+++ .+.++.|.... +.. -++++..| |...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~-a~~----~~~~~~~~------------i~~~ 80 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP-ASS----ATLSIFDS------------VLTR 80 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE-cCc----eEEeccce------------EEEE
Confidence 468999999999999999999999999999999999 77888887543 211 12333222 1110
Q ss_pred CCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH--
Q 001329 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME-- 614 (1099)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~-- 614 (1099)
.... +.+. -|+.. + ..|-+|++-.---+.+|+++|+|||.++.|+...
T Consensus 81 ~~~~--------d~~~-----~~~St----------------F-~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~ 130 (222)
T cd03287 81 MGAS--------DSIQ-----HGMST----------------F-MVELSETSHILSNCTSRSLVILDELGRGTSTHDGIA 130 (222)
T ss_pred ecCc--------cccc-----cccch----------------H-HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHH
Confidence 0000 0000 01111 1 1233333333334568999999999666664332
Q ss_pred --HHHHHHHHhc-CcEEEEEccChhHHHhc
Q 001329 615 --ERFCAKVRAM-GTSCITISHRPALVAFH 641 (1099)
Q Consensus 615 --~~l~~~l~~~-g~TvI~ItH~l~~i~~~ 641 (1099)
..+.+.+.+. +.++|++||+.++....
T Consensus 131 i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 131 IAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 3355555555 89999999999986543
No 440
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.11 E-value=1.2e-10 Score=143.28 Aligned_cols=76 Identities=25% Similarity=0.336 Sum_probs=68.3
Q ss_pred CCcChHHHHHHHHHHHHc----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHh-cCcEEEEEccChhHHHhcCEE
Q 001329 577 DELSLGEQQRLGMARLFY----------HKPKFAILDECT-SAVTTDMEERFCAKVRA-MGTSCITISHRPALVAFHDVV 644 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~----------~~P~iliLDEpT-SaLD~~~~~~l~~~l~~-~g~TvI~ItH~l~~i~~~D~I 644 (1099)
..||||||||++|||||+ .+|+++|||||| ++||+.....+.+.+++ .|.|+|+|||+......+|++
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~~~d~~ 546 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQKFDRH 546 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchhhhhcE
Confidence 479999999999999987 599999999998 78999999999998877 488999999999888889999
Q ss_pred EEEeCCCc
Q 001329 645 LSLDGEGE 652 (1099)
Q Consensus 645 l~l~~~g~ 652 (1099)
+++++.|+
T Consensus 547 ~~l~~~~~ 554 (562)
T PHA02562 547 LKMEKVGR 554 (562)
T ss_pred EEEEEECC
Confidence 99987443
No 441
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.11 E-value=4.9e-11 Score=128.44 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCC-----CCCCHHHHHHHHHHHHhc
Q 001329 583 EQQRLGMARLFYHKPKFAILDECT-----SAVTTDMEERFCAKVRAM 624 (1099)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEpT-----SaLD~~~~~~l~~~l~~~ 624 (1099)
|++++.|||+++.+|+++++|||| ++||+.+.+.+.+.+++.
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999988763
No 442
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.07 E-value=2.7e-10 Score=139.75 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=67.0
Q ss_pred CcChHHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 578 ELSLGEQQRLGMARLFYHK----PKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~----P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
.|||||+||++|||+++.. |+++|+||||++||+.+...+.+.+++ .+.|||+|||++..+..+|++++++++
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 6999999999999999985 699999999999999999999888775 389999999999999999999999863
No 443
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.04 E-value=1.5e-09 Score=137.05 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=53.9
Q ss_pred CCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH----HHHHhcCcEEEEEccChhHHHh
Q 001329 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC----AKVRAMGTSCITISHRPALVAF 640 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~----~~l~~~g~TvI~ItH~l~~i~~ 640 (1099)
+++|+||+|++.|++++ .+|+++|+|||++|+|+.....+. +.+.+.|.++|++||+.++...
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL 455 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence 47999999999999998 899999999999999998776653 3344568999999999887764
No 444
>PRK10869 recombination and repair protein; Provisional
Probab=99.02 E-value=6.1e-10 Score=135.89 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=67.0
Q ss_pred CcChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 578 ELSLGEQQRLGMARLFYH----KPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 578 ~LSGGqrQRlaIARAL~~----~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
.|||||+||++||++++. +|+++|+|||+++||..+...+.+.+++ .+.++|+|||++..+..||+++.+.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 599999999999999996 6899999999999999999999988875 368999999999999999999999763
No 445
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.98 E-value=3.8e-09 Score=115.36 Aligned_cols=155 Identities=18% Similarity=0.233 Sum_probs=88.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHH-HHHhcCcCcCCccEEEeCCCCccccccEEEEecCCC
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSL-FRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTL-l~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~ 523 (1099)
+.+++++..+.+ .+++|+.++|+||+||||||| ++.+.++.++... +.|+..+-.
T Consensus 8 ~~~~~ld~~l~g----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~--------------~~yi~~e~~ 63 (230)
T PRK08533 8 LSRDELHKRLGG----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS--------------VSYVSTQLT 63 (230)
T ss_pred EEEeeeehhhCC----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc--------------EEEEeCCCC
Confidence 455666654433 279999999999999999999 6899988764322 334432210
Q ss_pred CCcccHHHHhc-cCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc----CCC
Q 001329 524 TAVGTLRDQLI-YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH----KPK 598 (1099)
Q Consensus 524 l~~~Ti~eni~-~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~----~P~ 598 (1099)
...+.++.. ++. + +.+.... +.-.+.+-.| .+|+++.++-.+++.+-. +|+
T Consensus 64 --~~~~~~~~~~~g~---------~---~~~~~~~-~~l~~~~~~~---------~~~~~~~~~~~l~~il~~~~~~~~~ 119 (230)
T PRK08533 64 --TTEFIKQMMSLGY---------D---INKKLIS-GKLLYIPVYP---------LLSGNSEKRKFLKKLMNTRRFYEKD 119 (230)
T ss_pred --HHHHHHHHHHhCC---------c---hHHHhhc-CcEEEEEecc---------cccChHHHHHHHHHHHHHHHhcCCC
Confidence 011111110 110 0 0011000 0000111112 467777766666665543 699
Q ss_pred EEEEeCCCCCC----CHHHHHHHHHHHH---hcCcEEEEEccChhHH--------H-hcCEEEEEe
Q 001329 599 FAILDECTSAV----TTDMEERFCAKVR---AMGTSCITISHRPALV--------A-FHDVVLSLD 648 (1099)
Q Consensus 599 iliLDEpTSaL----D~~~~~~l~~~l~---~~g~TvI~ItH~l~~i--------~-~~D~Il~l~ 648 (1099)
++++||||+++ |+.....+.+.++ +.|.|+++ ||+.... . .+|-|+.|+
T Consensus 120 ~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 120 VIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred EEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 99999999999 7766666766655 45776655 5554332 1 247777775
No 446
>PRK13695 putative NTPase; Provisional
Probab=98.97 E-value=2.7e-10 Score=118.89 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=62.2
Q ss_pred CCcChHHHHHHHHHHHHccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 577 DELSLGEQQRLGMARLFYHKPKFAILDE--CTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~iliLDE--pTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
..+||+++-+..+++..+.+|+++++|| |+..+|+...+.+.+.+ +.+.++|+++|+......+|+|..+.+.
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKSRPGG 151 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECchhhHHHHHHHhccCCc
Confidence 3699999999999999999999999999 66677777777777777 6789999999997666788998888764
No 447
>PRK01156 chromosome segregation protein; Provisional
Probab=98.89 E-value=3.3e-09 Score=137.37 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=66.4
Q ss_pred CCCcChHHHHHHHH------HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hc-C-cEEEEEccChhHHHhcCE
Q 001329 576 GDELSLGEQQRLGM------ARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AM-G-TSCITISHRPALVAFHDV 643 (1099)
Q Consensus 576 g~~LSGGqrQRlaI------ARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~----~~-g-~TvI~ItH~l~~i~~~D~ 643 (1099)
...||||||||++| ||+++.+|++++|||||++||+.....+.+.+. .. + .|+|+|||+...+..||+
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~ 878 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADV 878 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCe
Confidence 45799999999975 599999999999999999999999998877664 22 3 489999999999999999
Q ss_pred EEEEeCCCc
Q 001329 644 VLSLDGEGE 652 (1099)
Q Consensus 644 Il~l~~~g~ 652 (1099)
++.++..||
T Consensus 879 ii~~~~~~~ 887 (895)
T PRK01156 879 AYEVKKSSG 887 (895)
T ss_pred EEEEEecCC
Confidence 999985443
No 448
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.88 E-value=7.4e-09 Score=122.40 Aligned_cols=148 Identities=20% Similarity=0.208 Sum_probs=97.8
Q ss_pred CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--------------ccccccEEEEecC
Q 001329 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--------------SDLNKEIFYVPQR 521 (1099)
Q Consensus 456 ~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--------------~~~r~~i~~v~Q~ 521 (1099)
.+..+++++ +.+.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|.. ..+++.|.++.+.
T Consensus 144 tg~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 144 VGVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred cchhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 356799999 9999999999999999999999999999999999999986543 1245667777653
Q ss_pred --CCCCc-------ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccC-CCCCcChHHHHHHHHHH
Q 001329 522 --PYTAV-------GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN-WGDELSLGEQQRLGMAR 591 (1099)
Q Consensus 522 --p~l~~-------~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~-~g~~LSGGqrQRlaIAR 591 (1099)
|.... .|+.|.+. ++ .. ++- .-++++ |.|-|-
T Consensus 223 ~~~~~~r~~~~~~a~~iAEyfr------------------------------~~-g~--~Vll~~Dslt-----r~A~A~ 264 (438)
T PRK07721 223 DQPALMRIKGAYTATAIAEYFR------------------------------DQ-GL--NVMLMMDSVT-----RVAMAQ 264 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH------------------------------HC-CC--cEEEEEeChH-----HHHHHH
Confidence 22110 12222222 11 00 000 000111 111110
Q ss_pred H----HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-----cCc-----EEEEEccChhHHHhcCEEEEEeC
Q 001329 592 L----FYHKPKFAILDECTSAVTTDMEERFCAKVRA-----MGT-----SCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 592 A----L~~~P~iliLDEpTSaLD~~~~~~l~~~l~~-----~g~-----TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
- .+.+|+ .|+|+|+.....+.+++++ .|. ||++.+||++. ..+|++..+.+
T Consensus 265 rEisl~~ge~P------~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~d 329 (438)
T PRK07721 265 REIGLAVGEPP------TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILD 329 (438)
T ss_pred HHHHHhcCCCC------ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecC
Confidence 0 123444 4899999999888777654 364 99999999985 77899998865
No 449
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=3.8e-09 Score=138.54 Aligned_cols=75 Identities=19% Similarity=0.114 Sum_probs=66.8
Q ss_pred CCcChHHHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcC
Q 001329 577 DELSLGEQQRLGMARLFYH----------KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHD 642 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~----------~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D 642 (1099)
..|||||++|++||+||+. +|+++|+||||++||+.+...+.+.+++ .|++|++|||++.... .+|
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~~ 1028 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPH 1028 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhCC
Confidence 5799999999999999985 7999999999999999999998887754 5899999999999875 689
Q ss_pred EEEEEeCCC
Q 001329 643 VVLSLDGEG 651 (1099)
Q Consensus 643 ~Il~l~~~g 651 (1099)
+|.|+..+|
T Consensus 1029 ~i~v~~~~~ 1037 (1042)
T TIGR00618 1029 RILVKKTNA 1037 (1042)
T ss_pred EEEEEECCC
Confidence 999997654
No 450
>PRK03918 chromosome segregation protein; Provisional
Probab=98.86 E-value=4.7e-09 Score=135.82 Aligned_cols=74 Identities=24% Similarity=0.248 Sum_probs=65.0
Q ss_pred CCcChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEE
Q 001329 577 DELSLGEQQ------RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSL 647 (1099)
Q Consensus 577 ~~LSGGqrQ------RlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l 647 (1099)
..|||||+| |+|+||+++.+|+++|+||||++||+.....+.+.+.. .+.|+|+|||+......||++++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 479999999 56666788999999999999999999999998887754 367999999999988899999999
Q ss_pred eCC
Q 001329 648 DGE 650 (1099)
Q Consensus 648 ~~~ 650 (1099)
+..
T Consensus 867 ~~~ 869 (880)
T PRK03918 867 SLE 869 (880)
T ss_pred Eec
Confidence 843
No 451
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.81 E-value=1.1e-08 Score=107.28 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=55.4
Q ss_pred CCcChHHHH------HHHHHHHHccCCCEEEEeCCCCCCC---HHHHHHHHHH---HHhcCcEEEEEccChhH-------
Q 001329 577 DELSLGEQQ------RLGMARLFYHKPKFAILDECTSAVT---TDMEERFCAK---VRAMGTSCITISHRPAL------- 637 (1099)
Q Consensus 577 ~~LSGGqrQ------RlaIARAL~~~P~iliLDEpTSaLD---~~~~~~l~~~---l~~~g~TvI~ItH~l~~------- 637 (1099)
..+|+||+| ....+.+...+|+++++||||+.+| ......+.+. +++.|.|+|+++|+...
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~ 149 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGG 149 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCc
Confidence 378999999 4555555667999999999999999 6555555444 45569999999998764
Q ss_pred --H-HhcCEEEEEeC
Q 001329 638 --V-AFHDVVLSLDG 649 (1099)
Q Consensus 638 --i-~~~D~Il~l~~ 649 (1099)
+ ..+|.|+.|+.
T Consensus 150 ~~~~~~aD~ii~l~~ 164 (187)
T cd01124 150 GDVEYLVDGVIRLRL 164 (187)
T ss_pred CceeEeeeEEEEEEE
Confidence 3 35799998874
No 452
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.81 E-value=2.1e-08 Score=117.72 Aligned_cols=155 Identities=17% Similarity=0.093 Sum_probs=108.2
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCC
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~ 523 (1099)
.++-++++..+..+..+++++ +.+.+||+++|+|+||+|||||++.|+|..+|+.|.|.+.|. +.
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGe-------------rg- 194 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGE-------------RG- 194 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCC-------------Cc-
Confidence 456667776676677888885 999999999999999999999999999999999887765543 22
Q ss_pred CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc-------cC
Q 001329 524 TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY-------HK 596 (1099)
Q Consensus 524 l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~-------~~ 596 (1099)
.+++|.+.. .+..-++..- ..+..-.+-|.|+|+|++.+.+.+ .+
T Consensus 195 ---~ev~e~~~~------------------~l~~~gl~~t-------vvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~ 246 (432)
T PRK06793 195 ---REVKDFIRK------------------ELGEEGMRKS-------VVVVATSDESHLMQLRAAKLATSIAEYFRDQGN 246 (432)
T ss_pred ---ccHHHHHHH------------------Hhhhccccee-------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 133343321 1111111100 000011367999999999999988 78
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCE
Q 001329 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDV 643 (1099)
Q Consensus 597 P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~ 643 (1099)
|-++++||||...|+. +++-.++.+ .|.+..+.||-..+.+.+..
T Consensus 247 ~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 247 NVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK 294 (432)
T ss_pred cEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc
Confidence 9999999999999996 444444443 37788888885555555533
No 453
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.80 E-value=4.6e-08 Score=105.89 Aligned_cols=137 Identities=18% Similarity=0.136 Sum_probs=81.5
Q ss_pred CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-CccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcc
Q 001329 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIY 535 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~ 535 (1099)
++.+-+|++|+.++|++++|+||||+||||+++.++...-. ..|. .++.. ..+++++.+ .+......|++..
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~-~vpa~----~~~i~~~~~--i~~~~~~~d~~~~ 88 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM-DVPAK----SMRLSLVDR--IFTRIGARDDIMK 88 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC-ccCcc----ccEeccccE--EEEecCccccccc
Confidence 35788999999999999999999999999999999875321 1121 01110 001111100 0000000111111
Q ss_pred CCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001329 536 PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615 (1099)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~ 615 (1099)
+ . +.+. .|-++++-.-..+.+|+++++|||++|.|+....
T Consensus 89 ~-----------------------~----------------StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~ 128 (218)
T cd03286 89 G-----------------------E----------------STFM-VELSETANILRHATPDSLVILDELGRGTSTHDGY 128 (218)
T ss_pred C-----------------------c----------------chHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHH
Confidence 1 0 0111 2333443333334689999999999999987755
Q ss_pred HHH----HHHHhc-CcEEEEEccChhHHHh
Q 001329 616 RFC----AKVRAM-GTSCITISHRPALVAF 640 (1099)
Q Consensus 616 ~l~----~~l~~~-g~TvI~ItH~l~~i~~ 640 (1099)
.+. +.+.+. +.++|++||+.++...
T Consensus 129 ~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 129 AIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 543 334444 8999999999998764
No 454
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.74 E-value=3.3e-09 Score=124.14 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=44.4
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCcc-EEEeCCCC
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG-HIAKPGVG 508 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G-~I~i~g~~ 508 (1099)
++|++||+++++||+++|+||||||||||++ +|+.+|++| +|.++|.+
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~ 68 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATH 68 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEE
Confidence 6899999999999999999999999999999 788888888 79999964
No 455
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.71 E-value=1.9e-08 Score=133.75 Aligned_cols=73 Identities=27% Similarity=0.381 Sum_probs=64.8
Q ss_pred CCCcChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEe
Q 001329 576 GDELSLGEQQRLGMARLF----YHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648 (1099)
Q Consensus 576 g~~LSGGqrQRlaIARAL----~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1099)
...||||||||++||+++ +.+|+++||||||++||+.+...+.+.++.. +.++|+|||++..+..||+++.+.
T Consensus 1087 ~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~~ 1165 (1179)
T TIGR02168 1087 LSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGVT 1165 (1179)
T ss_pred ccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeeee
Confidence 458999999999999998 4678999999999999999999998887653 678999999999998999998664
No 456
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.71 E-value=3.8e-08 Score=112.16 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=82.5
Q ss_pred eeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc-ccc--ccEEEEecCCCCCcccHHHHhccCCCCC
Q 001329 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-DLN--KEIFYVPQRPYTAVGTLRDQLIYPLTSD 540 (1099)
Q Consensus 464 vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-~~r--~~i~~v~Q~p~l~~~Ti~eni~~~~~~~ 540 (1099)
+++.+++|+.++|+||+|||||||+++|++++++..|.+.++...+ .++ ..+.++.+.. .
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~----------------~- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKG----------------G- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCC----------------C-
Confidence 5678889999999999999999999999999999988877754211 000 1111111100 0
Q ss_pred CcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 001329 541 QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK 620 (1099)
Q Consensus 541 ~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~ 620 (1099)
+. ....+ ..-.++.+|-.+|+++++|||.+ .+.. .+++.
T Consensus 200 ---------------------------~~------~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~---~e~~-~~l~a 238 (308)
T TIGR02788 200 ---------------------------QG------LAKVT----PKDLLQSCLRMRPDRIILGELRG---DEAF-DFIRA 238 (308)
T ss_pred ---------------------------CC------cCccC----HHHHHHHHhcCCCCeEEEeccCC---HHHH-HHHHH
Confidence 00 00111 12246677889999999999996 2322 23444
Q ss_pred HHhcCcEEEEEccChhHHHhcCEEEEEe
Q 001329 621 VRAMGTSCITISHRPALVAFHDVVLSLD 648 (1099)
Q Consensus 621 l~~~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1099)
+..-+.+++.++|..+.....||+..+.
T Consensus 239 ~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~ 266 (308)
T TIGR02788 239 VNTGHPGSITTLHAGSPEEAFEQLALMV 266 (308)
T ss_pred HhcCCCeEEEEEeCCCHHHHHHHHHHHh
Confidence 4433346799999998777677777664
No 457
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.68 E-value=9.1e-08 Score=98.60 Aligned_cols=73 Identities=25% Similarity=0.329 Sum_probs=59.2
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEEeCCC
Q 001329 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDGEG 651 (1099)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l~~~g 651 (1099)
..|-||-=---+.+.+ ++.-|.|||||-++|.+.-+..++..++. .|.-+|+.||.+-++.+ .-.|+.++.+|
T Consensus 129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g 205 (233)
T COG3910 129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESG 205 (233)
T ss_pred hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCC
Confidence 5788987766666665 45689999999999999999888877654 58999999999988775 46888888765
No 458
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.65 E-value=4.8e-08 Score=127.83 Aligned_cols=73 Identities=19% Similarity=0.087 Sum_probs=62.1
Q ss_pred CCcChHHHHHHHHHHHHcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhc-CEE
Q 001329 577 DELSLGEQQRLGMARLFYH--------KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFH-DVV 644 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~--------~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~-D~I 644 (1099)
.+|||||+|+++||+||.. +|+++|+||||++||+.+...+++.+.. .|+||++|||...+.... .+|
T Consensus 948 ~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~qi 1027 (1047)
T PRK10246 948 RTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQI 1027 (1047)
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccceE
Confidence 5799999999999999995 8999999999999999999998877653 599999999977776654 555
Q ss_pred EEEeC
Q 001329 645 LSLDG 649 (1099)
Q Consensus 645 l~l~~ 649 (1099)
.|-..
T Consensus 1028 ~V~k~ 1032 (1047)
T PRK10246 1028 KVKKI 1032 (1047)
T ss_pred EEEEC
Confidence 55543
No 459
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=98.64 E-value=0.00018 Score=78.84 Aligned_cols=297 Identities=14% Similarity=0.169 Sum_probs=160.6
Q ss_pred HHHHHhhchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------hhHHHHHHHHHHHHHHHHHHHHH
Q 001329 91 LAAILLSEMGKMGARD-LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-------VPLFFQLISENILLCFLLSTMHS 162 (1099)
Q Consensus 91 Ll~~~~p~~~~~~~~~-ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~-------~~~~~~~l~~~~~l~~~~~~~~~ 162 (1099)
.+....||++...+-+ -...++..-...-+++.++.|.+.|+|-+++.. ...|...++++..+.++...++.
T Consensus 73 fw~~~sph~wq~wsilgtali~f~tyF~vqvsvain~wy~pf~d~~q~als~~~~~t~~~fY~~~~vF~~IA~~~v~i~v 152 (405)
T COG1133 73 FWFIYSPHRWQYWSILGTALIIFVTYFLVQVSVAVNAWYGPFYDLIQNALSSPPKVTAGQFYSLVGVFLGIALIAVVISV 152 (405)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456655433210 112223333444567788899999998776422 12356666667666666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1099)
Q Consensus 163 ~~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L 242 (1099)
+..|+.....-|||..++....+.|= + .+++....||+.+|.-++.+.+-++-.+++.++.+.+.|.=++
T Consensus 153 ln~ffvShyiFrWRtAMn~~ym~~W~-k---------lrhIEGasQRvQEDTmrFSstlE~LGvsfi~siMTLiaFlPvL 222 (405)
T COG1133 153 LNNFFVSHYIFRWRTAMNEYYMANWQ-K---------LRHIEGASQRVQEDTMRFSSTLENLGVSFINAIMTLIAFLPVL 222 (405)
T ss_pred HHHHHHHHHHhHHHHHhhHHHHHhhh-h---------hccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 78888888899999998776655542 1 1234456799999999999999888888888887776663222
Q ss_pred H---HH--------hhhhHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Q 001329 243 C---SY--------ASPKYVFWILAYV-LGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEE 310 (1099)
Q Consensus 243 ~---~~--------~~~~l~l~il~~~-~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~ 310 (1099)
. .. ..|...+++.+.- ....++....+-++..+..+.|+.|+.+|..+..-.+|.+- + +.
T Consensus 223 ~~ls~~Vs~Lpiig~ip~~Lv~aAi~wslfGtv~la~vGIKLPGLef~NQrvEAAyRKELVYgEDh~dr--A---~p--- 294 (405)
T COG1133 223 FTLSAHVSELPIIGHIPHALVWAAIVWSLFGTVLLAVVGIKLPGLEFRNQRVEAAYRKELVYGEDHADR--A---TP--- 294 (405)
T ss_pred HHHHHhcccCcccccCchHHHHHHHHHHHhchHHHHhhhccCCCcccccHHHHHHHHhhhhccCCchhh--c---CC---
Confidence 2 11 1233333333222 22223334455566667778888898888755444444321 0 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHH
Q 001329 311 SHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLF 390 (1099)
Q Consensus 311 ~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~ 390 (1099)
....+.|.++..+..+.-..-..+++..-+.... ..++.+++..+..++|. .|+|....++ ..+...-
T Consensus 295 ~T~~ELf~nvr~NYfRLyfHY~YFNiari~ylQ~-dnif~llil~PsivAgk-----itlG~~~QI~------n~FgqVr 362 (405)
T COG1133 295 PTVRELFSNVRKNYFRLYFHYMYFNIARILYLQV-DNIFGLLILFPSIVAGK-----ITLGLMTQIT------NVFGQVR 362 (405)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHhch-----hhHHHHHHHH------HHHHHhh
Confidence 1123455555554443311111122211111111 11222223223233443 4676433222 2233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 391 QSLGTLSISSRRLNRLSGYADRIHELM 417 (1099)
Q Consensus 391 ~~l~~l~~~~~~l~~~~~~~~Ri~ell 417 (1099)
.++.-+.+++..+.++.+--+|+.++-
T Consensus 363 ~SfqylinsWTTIveL~SIyKRLraFE 389 (405)
T COG1133 363 GSFQYLINSWTTIVELLSIYKRLRAFE 389 (405)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 455556666777777777777776653
No 460
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.63 E-value=1.1e-07 Score=101.65 Aligned_cols=57 Identities=9% Similarity=0.130 Sum_probs=46.4
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEe
Q 001329 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648 (1099)
Q Consensus 588 aIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1099)
+++++|..+|+++++|||. |.++...+.+.. ..|.+++.++|..+.....||++.+-
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a-~~G~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALTAA-ETGHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHH-HcCCEEEEEecCCcHHHHHhHHHhhc
Confidence 5889999999999999996 777666555554 36889999999999888788887664
No 461
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.62 E-value=2.4e-07 Score=93.73 Aligned_cols=126 Identities=22% Similarity=0.194 Sum_probs=75.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHH
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~ 552 (1099)
+++|.||||+||||+++.+++...+..|.+ .|+.++.... ...++...... .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v-------------~~~~~e~~~~--~~~~~~~~~~~-------------~ 52 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKV-------------VYVDIEEEIE--ELTERLIGESL-------------K 52 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEE-------------EEEECCcchH--HHHHHHhhhhh-------------c
Confidence 378999999999999999999887654544 4555443211 11111100000 0
Q ss_pred HHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCC----------HHHHHHHHHH--
Q 001329 553 ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT----------TDMEERFCAK-- 620 (1099)
Q Consensus 553 ~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD----------~~~~~~l~~~-- 620 (1099)
...+ ...+... .....+.++.++++.+++...+|+++++||+++-++ ....+.+.++
T Consensus 53 ~~~~---~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 121 (165)
T cd01120 53 GALD---NLIIVFA--------TADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLE 121 (165)
T ss_pred cccc---cEEEEEc--------CCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 0000 0000111 112345667778899999999999999999996544 3434444443
Q ss_pred -HHhcCcEEEEEccChhH
Q 001329 621 -VRAMGTSCITISHRPAL 637 (1099)
Q Consensus 621 -l~~~g~TvI~ItH~l~~ 637 (1099)
.++.+.|+|+++|....
T Consensus 122 ~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 122 RARKGGVTVIFTLQVPSG 139 (165)
T ss_pred HHhcCCceEEEEEecCCc
Confidence 34469999999997653
No 462
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.61 E-value=6.5e-08 Score=128.68 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=66.4
Q ss_pred CCCcChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeC
Q 001329 576 GDELSLGEQQRLGMARLFYH----KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~----~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
...||||||++++||++|+. +|+++|||||+++||+.....+.+.+.+. +.++|+|||+..++..||+++.+..
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 45799999999999999984 78999999999999999999999988763 6789999999999999999987754
No 463
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.61 E-value=3.4e-06 Score=106.91 Aligned_cols=295 Identities=16% Similarity=0.085 Sum_probs=190.8
Q ss_pred eeEehhhHHHHhhHHHHHHHhcCCcchhHHhh-cCHHHHHHHHHHHHhhhhhHHHHhh----HHHHHHHHHHHHHHHHHH
Q 001329 760 QLLAVAFLVVSRTWISDRIASLNGTTVKYVLE-QDKASFVRLIGVSVLQSAASSFIAP----SIRHLTARLALGWRIRMT 834 (1099)
Q Consensus 760 ~lv~c~~~lv~Rt~ls~~va~l~g~~v~~iv~-~~~~~F~~~l~~~~~~~~~~s~~n~----~l~~~~~~l~l~~R~rLt 834 (1099)
.+....++.+.-+.+.+.+..+-|.++..++. ++...|...+...+++++..++++. ...+...++..++|.++.
T Consensus 162 ~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~ 241 (711)
T TIGR00958 162 WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLF 241 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888999988888999988874 4666776655444443333344332 233555566666777666
Q ss_pred HHHHHHhccCCCceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhCcchHHHHHHHHHH
Q 001329 835 QHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLL 914 (1099)
Q Consensus 835 ~~~~~~Yl~~~~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~ 914 (1099)
+++.+. +..||+ +.+..+.-+++|+|++...+.+++-...++..++-++.+..-+.. +.+.-..++...+.+
T Consensus 242 ~~ll~~---~~~~f~----~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~-~s~~l~l~~l~~~~l 313 (711)
T TIGR00958 242 RSLLRQ---DLGFFD----ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW-LSPRLTMVTLINLPL 313 (711)
T ss_pred HHHHcC---CHHHHc----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence 666653 344443 233456677999999999988877666666555555444443332 222223333444445
Q ss_pred HHHHHhhcCCcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001329 915 GLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDF 994 (1099)
Q Consensus 915 ~~~~lr~~~P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~ 994 (1099)
...+.+.+.+...++..+.++.++++...-...+.+.++|--|++++.|....++..+++.+...+..+....+..+.++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (711)
T TIGR00958 314 VFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSV 393 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567777888899999999999999999999999999999999999999998888888777665555544444444433
Q ss_pred HHhhccchhhhhhhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q 001329 995 VTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELL 1073 (1099)
Q Consensus 995 ~~Ky~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~~k~~~~laG~t~Rv~el~~~l 1073 (1099)
+. .+..++.+. .+.+.+. .+.. +.++.+--..+. .....++..++..+.++.+..+...|+.++++.-
T Consensus 394 ~~-~~~~~~il~-~g~~lv~-~g~i----t~G~lva~~~~~----~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 461 (711)
T TIGR00958 394 LG-MLIQVLVLY-YGGQLVL-TGKV----SSGNLVSFLLYQ----EQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRK 461 (711)
T ss_pred HH-HHHHHHHHH-HHHHHHH-cCCC----CHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 21 121111111 1111111 1211 133443322222 3367789999999999999999999999987653
No 464
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.59 E-value=1.8e-07 Score=113.82 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=64.5
Q ss_pred CCCcChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHHH---HhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 576 GDELSLGEQQRLGMARLFYHK--PKFAILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~~--P~iliLDEpTSaLD~~~~~~l~~~l---~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
..+|||||.||+-+|.-+-.+ -=+++||||+.||-+.--.++.+.| +..|-|+|+|.||.++++.||+|+-+-.+
T Consensus 479 a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPg 558 (935)
T COG0178 479 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPG 558 (935)
T ss_pred CCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCC
Confidence 358999999999999999865 4578999999999887777766554 55799999999999999999999988643
No 465
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=98.53 E-value=9e-06 Score=90.73 Aligned_cols=245 Identities=14% Similarity=0.122 Sum_probs=171.7
Q ss_pred CHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCCCCCCCCcchhhhHHHHH
Q 001329 793 DKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLT 872 (1099)
Q Consensus 793 ~~~~F~~~l~~~~~~~~~~s~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~~~yY~~~~ld~ri~n~Dq~it~Dv~~f~ 872 (1099)
+..+|...+..++.++.|.-++..+..|..+..-.+||+-+|+|..+.+=+- ..|+.+.|||-||..+||
T Consensus 51 t~~ef~~~~~~f~~ia~~~v~~~v~~~ff~shyiFrWR~Am~~yY~~~W~~~----------r~IEGASQRIQEDtmrfa 120 (315)
T PF05992_consen 51 TIDEFYAQILNFLWIAMIYVVLAVLNSFFVSHYIFRWRTAMNEYYMSHWPKL----------RHIEGASQRIQEDTMRFA 120 (315)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh----------ccCccHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999988764321 238889999999999999
Q ss_pred HHHHhhhhccchhhHHHHHHHHHHHH---hhCc-------chH--HHHHHHHHHHHHHHhhcCCcchhhcHHHHhhccch
Q 001329 873 TDLSGLVTGMVKPSVDILWFTWRMKA---LTGQ-------RGV--AILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTF 940 (1099)
Q Consensus 873 ~~~a~lys~~~KP~lDi~~~~~~l~~---~~g~-------~g~--~~~~~~~~~~~~~lr~~~P~fg~l~a~e~~leG~~ 940 (1099)
+-+-+|--++.+-++-.+-|.--|.. .+.. .++ ...+.+.++++.++=.++-+.=.+--+-|+.|.+|
T Consensus 121 ~i~E~Lgv~~i~simtliaFlPiL~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAy 200 (315)
T PF05992_consen 121 KIMEDLGVSFIRSIMTLIAFLPILWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAY 200 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHH
Confidence 99999999999999999888755544 4331 111 33456666677777778888888999999999999
Q ss_pred hhhhhhhhhchhhhcccCCcHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHhhccchhhhhhhhhhee
Q 001329 941 RFMHERLRAHAESVAFFGGGAREKAMIESR-------FRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAM 1013 (1099)
Q Consensus 941 R~~hsrli~~aEeiAFy~G~~~E~~~~~~~-------~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~ 1013 (1099)
|--- + .+|+=+ +..+-.++.+. |.+|..|.-++--.|.+|.=++. .++|.++++-.+
T Consensus 201 RKeL---V-~gED~~----~ra~~~tl~eLF~~Vr~Ny~rly~hy~yfni~~~~y~q~~~--------i~~~i~l~Psi~ 264 (315)
T PF05992_consen 201 RKEL---V-YGEDDA----NRAQPPTLRELFSNVRRNYFRLYFHYMYFNIARISYLQFDV--------IFPYIILIPSIV 264 (315)
T ss_pred HHHH---H-hcCccc----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 9732 2 233221 12233444444 44444454444444555544444 356666666555
Q ss_pred cccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q 001329 1014 EHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELL 1073 (1099)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~~k~~~~laG~t~Rv~el~~~l 1073 (1099)
..... -|.+.+-.+-..+ ...++-=++.+++.++||.---.|+.++...+
T Consensus 265 ag~iT------LG~~~Qi~~aF~~----V~~sfq~lv~~W~tivEL~Si~kRL~~FE~~I 314 (315)
T PF05992_consen 265 AGAIT------LGVLQQISNAFGQ----VRSSFQYLVNSWTTIVELRSIYKRLRAFEANI 314 (315)
T ss_pred hcccc------HHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 43222 3345443333333 34467778889999999988888888876554
No 466
>PRK02224 chromosome segregation protein; Provisional
Probab=98.52 E-value=1.5e-07 Score=122.12 Aligned_cols=74 Identities=27% Similarity=0.399 Sum_probs=64.2
Q ss_pred CCcChHHHH------HHHHHHHHccC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHh---cCc-EEEEEccChhHHHh
Q 001329 577 DELSLGEQQ------RLGMARLFYHK-----P-KFAILDECTSAVTTDMEERFCAKVRA---MGT-SCITISHRPALVAF 640 (1099)
Q Consensus 577 ~~LSGGqrQ------RlaIARAL~~~-----P-~iliLDEpTSaLD~~~~~~l~~~l~~---~g~-TvI~ItH~l~~i~~ 640 (1099)
..||||||| |+++|+++..+ | +++|+||||++||+.....+.+.++. .|. ++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 479999999 99999999864 3 67999999999999999998877654 344 89999999999999
Q ss_pred cCEEEEEeCC
Q 001329 641 HDVVLSLDGE 650 (1099)
Q Consensus 641 ~D~Il~l~~~ 650 (1099)
+|+++.+..+
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999754
No 467
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.50 E-value=9.4e-08 Score=113.83 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=83.6
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCC
Q 001329 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSD 540 (1099)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~ 540 (1099)
+++.++.+++|++++++|||||||||++..|++.+.+..|.. +|++|++|++ ..+..||+.+.....
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------kV~LI~~Dt~--RigA~EQLr~~Aeil 312 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------KVALLTTDSY--RIGGHEQLRIYGKIL 312 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------eEEEEeCCcc--chhHHHHHHHHHHHh
Confidence 444555667899999999999999999999999887666632 5889999984 456678876421111
Q ss_pred CcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH-HHHHHHHHccCC-----CEEEEeCCCCCCCHHHH
Q 001329 541 QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ-RLGMARLFYHKP-----KFAILDECTSAVTTDME 614 (1099)
Q Consensus 541 ~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQ-RlaIARAL~~~P-----~iliLDEpTSaLD~~~~ 614 (1099)
+.......+.........++.+.-..+. .+...+|+- .+.-+.+++.++ .+|+||.++..-| -
T Consensus 313 GVpv~~~~~~~Dl~~aL~~L~d~d~VLI--------DTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~---l 381 (484)
T PRK06995 313 GVPVHAVKDAADLRLALSELRNKHIVLI--------DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT---L 381 (484)
T ss_pred CCCeeccCCchhHHHHHHhccCCCeEEe--------CCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH---H
Confidence 1100001111112223334433211111 121111211 223333444444 6899999888733 2
Q ss_pred HHHHHHHHhcCcEEEEEcc
Q 001329 615 ERFCAKVRAMGTSCITISH 633 (1099)
Q Consensus 615 ~~l~~~l~~~g~TvI~ItH 633 (1099)
.++.+..+..+.+-+++|+
T Consensus 382 ~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 382 NEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred HHHHHHhccCCCCEEEEeC
Confidence 3333444445777777786
No 468
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.50 E-value=2.6e-07 Score=108.82 Aligned_cols=81 Identities=22% Similarity=0.212 Sum_probs=69.4
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCC---C----------
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV---G---------- 508 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~---~---------- 508 (1099)
.+.++.++++..|..+..+++.++ .+.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|. +
T Consensus 137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~ 215 (450)
T PRK06002 137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA 215 (450)
T ss_pred CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH
Confidence 356899999999988888999996 99999999999999999999999999999999999988653 2
Q ss_pred ccccccEEEEecCCC
Q 001329 509 SDLNKEIFYVPQRPY 523 (1099)
Q Consensus 509 ~~~r~~i~~v~Q~p~ 523 (1099)
...++.|++|+|...
T Consensus 216 ~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 216 DNLKKAVAVVATSDE 230 (450)
T ss_pred HhhCCeEEEEEcCCC
Confidence 112467999999654
No 469
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.49 E-value=4.3e-07 Score=116.04 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=47.5
Q ss_pred HccCCCEEEEeCCCCCC-CHHHHHHHHHHHH---hcCcEEEEEccChhHH----------HhcCEEEEEeCC
Q 001329 593 FYHKPKFAILDECTSAV-TTDMEERFCAKVR---AMGTSCITISHRPALV----------AFHDVVLSLDGE 650 (1099)
Q Consensus 593 L~~~P~iliLDEpTSaL-D~~~~~~l~~~l~---~~g~TvI~ItH~l~~i----------~~~D~Il~l~~~ 650 (1099)
+..+|+++++|||+.+| |+...+.+.+.++ +.|.++|++||+++.+ ..||..++|.++
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~ 720 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNG 720 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCc
Confidence 36799999999999999 6888887776654 4689999999999876 368888888653
No 470
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.47 E-value=2.5e-07 Score=107.09 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCCCceee-----------eeeEEEeCCCEEE
Q 001329 407 SGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVE-----------NLTLKVEPGSNLL 475 (1099)
Q Consensus 407 ~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~vL~-----------~vsl~i~~Ge~va 475 (1099)
....+|++++++.++.... .+ ....+.++|+||++.||+++.+|+ |+++.|.+||+++
T Consensus 104 ~~~~ER~~~Ll~v~~vn~~---~~--------e~~~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~ 172 (415)
T TIGR00767 104 PKEGERYFALLKVESVNGD---DP--------EKAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGL 172 (415)
T ss_pred cccHhHHHHHhCCCccCCC---Cc--------cccCCCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEE
Confidence 4567899999986543211 00 012357999999999998878897 9999999999999
Q ss_pred EEcCCCCchhHHHHHhcCcCcC
Q 001329 476 ITGPNGSGKSSLFRVLGGLWPL 497 (1099)
Q Consensus 476 IvG~sGsGKSTLl~lL~Gl~~p 497 (1099)
|+||+|||||||++.|++.+..
T Consensus 173 IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 173 IVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred EECCCCCChhHHHHHHHHhhcc
Confidence 9999999999999999998764
No 471
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.47 E-value=2.4e-06 Score=93.47 Aligned_cols=149 Identities=19% Similarity=0.202 Sum_probs=86.7
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhc-CcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhc-cCCCCCCcCC
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLG-GLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI-YPLTSDQEVE 544 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~-Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~-~~~~~~~~~~ 544 (1099)
-+++|..+.|.|++|||||||...++ +... . | .++.|+..+-. ...+.++.. ++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~-g------------~~~~y~~~e~~--~~~~~~~~~~~g~~------ 78 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-Q-G------------KKVYVITTENT--SKSYLKQMESVKID------ 78 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-C-C------------CEEEEEEcCCC--HHHHHHHHHHCCCC------
Confidence 58999999999999999999999875 2111 1 1 24556554321 111222211 1100
Q ss_pred cCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc--CCCEEEEeCCCCCC---CHHHHHHHHH
Q 001329 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH--KPKFAILDECTSAV---TTDMEERFCA 619 (1099)
Q Consensus 545 ~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~--~P~iliLDEpTSaL---D~~~~~~l~~ 619 (1099)
+.+... .+...+.+..|. .....|.++++.+..++..+. +|+++++||||+.+ |......+.+
T Consensus 79 ------~~~~~~-~g~l~i~~~~~~-----~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~ 146 (234)
T PRK06067 79 ------ISDFFL-WGYLRIFPLNTE-----GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT 146 (234)
T ss_pred ------hhHHHh-CCCceEEecccc-----ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH
Confidence 000000 000011111111 112457789999999999997 99999999999654 4444444433
Q ss_pred HH---HhcCcEEEEEccChhH-------HH-hcCEEEEEeC
Q 001329 620 KV---RAMGTSCITISHRPAL-------VA-FHDVVLSLDG 649 (1099)
Q Consensus 620 ~l---~~~g~TvI~ItH~l~~-------i~-~~D~Il~l~~ 649 (1099)
.+ ++.|.|+++++|.... +. .+|-++.|+.
T Consensus 147 ~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 147 EAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 33 4468999999997653 22 3577877763
No 472
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.46 E-value=1.5e-07 Score=100.10 Aligned_cols=113 Identities=11% Similarity=0.081 Sum_probs=66.7
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHH
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~ 552 (1099)
+++|+||||||||||.+.|.+++ ..| .+.++++|.+....+..+...............+.+.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~-------------~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNP-------------KVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLI 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCC-------------CeEEEEecccccccccccHHHhccCCCCCCCcccHHHHH
Confidence 48999999999999999999987 222 245566665443222222111111111111112334455
Q ss_pred HHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 001329 553 ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 611 (1099)
Q Consensus 553 ~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~ 611 (1099)
+.++.+...+.+.. | .-+.|.|++++..+ .+.+|+++|+|+|+...++
T Consensus 66 ~~l~~l~~~~~~~~-p-------~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 66 SHLQDLKNGKSVEI-P-------VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHCCCCEec-c-------ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 55555444332222 2 13578888776555 5788999999999999886
No 473
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.40 E-value=3.8e-07 Score=96.39 Aligned_cols=77 Identities=26% Similarity=0.248 Sum_probs=57.4
Q ss_pred eeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc---cccccEEEEecCCCC---CcccHHHHh
Q 001329 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIFYVPQRPYT---AVGTLRDQL 533 (1099)
Q Consensus 460 vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~---~~r~~i~~v~Q~p~l---~~~Ti~eni 533 (1099)
..+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+++..+ ..+..++++.|.+.. ...+..+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 34456677899999999999999999999999999999999999977531 123456777765532 234666666
Q ss_pred ccC
Q 001329 534 IYP 536 (1099)
Q Consensus 534 ~~~ 536 (1099)
...
T Consensus 94 ~~~ 96 (186)
T cd01130 94 RSA 96 (186)
T ss_pred HHH
Confidence 543
No 474
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.36 E-value=5.3e-07 Score=99.07 Aligned_cols=44 Identities=9% Similarity=0.196 Sum_probs=33.4
Q ss_pred HHccCCCEEEEeCCCCC------CCHHHHHHHHHHH----HhcCcEEEEEccChh
Q 001329 592 LFYHKPKFAILDECTSA------VTTDMEERFCAKV----RAMGTSCITISHRPA 636 (1099)
Q Consensus 592 AL~~~P~iliLDEpTSa------LD~~~~~~l~~~l----~~~g~TvI~ItH~l~ 636 (1099)
+...+|+++|+| |+++ +|+.....+++.+ ++.|+|+|+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 346899999999 7754 6887777766654 345999999999753
No 475
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.32 E-value=6.7e-07 Score=104.22 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=57.4
Q ss_pred CcChHHHHHHHHHHHHcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH
Q 001329 578 ELSLGEQQRLGMARLFYH---------KPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA 639 (1099)
Q Consensus 578 ~LSGGqrQRlaIARAL~~---------~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~ 639 (1099)
.+|.|||++++||.+|+. +|+|++||||+|+||+.....+.+.+.+.|.+++++||+++.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhcc
Confidence 699999999999999999 99999999999999999999999999766789999999887543
No 476
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.31 E-value=9.1e-06 Score=78.94 Aligned_cols=115 Identities=26% Similarity=0.254 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCcCCc-cEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCH
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVS-GHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH 548 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~-G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~ 548 (1099)
+|..+.|+||+||||||+++.|++...... +-+.++.. ..... ..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~--------------~~~~~--------------------~~ 46 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE--------------DILEE--------------------VL 46 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE--------------Ecccc--------------------CH
Confidence 478899999999999999999999887554 33333321 00000 00
Q ss_pred HHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH---------
Q 001329 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA--------- 619 (1099)
Q Consensus 549 ~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~--------- 619 (1099)
.+.. ...... ......+++.++..+++|-..+|+++++||+....+.........
T Consensus 47 ~~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~ 110 (148)
T smart00382 47 DQLL--------LIIVGG--------KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLL 110 (148)
T ss_pred HHHH--------hhhhhc--------cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHH
Confidence 0000 000000 112578899999999999999999999999999999887776543
Q ss_pred HHHhcCcEEEEEccC
Q 001329 620 KVRAMGTSCITISHR 634 (1099)
Q Consensus 620 ~l~~~g~TvI~ItH~ 634 (1099)
.....+..+|.++|.
T Consensus 111 ~~~~~~~~~i~~~~~ 125 (148)
T smart00382 111 LKSEKNLTVILTTND 125 (148)
T ss_pred HHhcCCCEEEEEeCC
Confidence 222347788888884
No 477
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.28 E-value=1.3e-05 Score=102.84 Aligned_cols=135 Identities=21% Similarity=0.229 Sum_probs=84.7
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcC-cCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccC
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW-PLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~-~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1099)
..+-+|+++. +.+..+.|+|||++||||++|.++-.. -..-|. +||=+.. .-++.|.|
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~---------------~VPa~~a--~i~~~d~I--- 653 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS---------------FVPAESA--RIGIVDRI--- 653 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC---------------ceeccce--EecccCee---
Confidence 3566788887 677899999999999999999875321 111111 2221110 00011111
Q ss_pred CCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc--CCCEEEEeCC---CCCCCH
Q 001329 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH--KPKFAILDEC---TSAVTT 611 (1099)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~--~P~iliLDEp---TSaLD~ 611 (1099)
.-++|..+-+. ..+|-=+.....++++|-. ++.++|+||| |+.+|.
T Consensus 654 ------------------~triga~d~i~-----------~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg 704 (854)
T PRK05399 654 ------------------FTRIGASDDLA-----------SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDG 704 (854)
T ss_pred ------------------eeccCcccccc-----------cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchh
Confidence 11112111111 2467777777777777765 8999999999 999997
Q ss_pred HHHHH-HHHHHHhc-CcEEEEEccChhHHHhcC
Q 001329 612 DMEER-FCAKVRAM-GTSCITISHRPALVAFHD 642 (1099)
Q Consensus 612 ~~~~~-l~~~l~~~-g~TvI~ItH~l~~i~~~D 642 (1099)
..... +.+.+.+. +.++|++||..++...++
T Consensus 705 ~aia~aile~l~~~~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 705 LSIAWAVAEYLHDKIGAKTLFATHYHELTELEE 737 (854)
T ss_pred HHHHHHHHHHHHhcCCceEEEEechHHHHHHhh
Confidence 66443 66666665 689999999977765544
No 478
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.22 E-value=3.6e-06 Score=97.54 Aligned_cols=123 Identities=19% Similarity=0.270 Sum_probs=77.8
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcCcCcC-CccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcC
Q 001329 468 VEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546 (1099)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~ 546 (1099)
..++..+.|.||+||||||+++.+.+.+++ .+|+|..-. ||. |.. ++.... . .
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE--------------dp~-------E~~-~~~~~~-~---i 172 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE--------------DPI-------EYV-HRNKRS-L---I 172 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc--------------CCh-------hhh-ccCccc-e---E
Confidence 457899999999999999999999997763 456654322 110 000 000000 0 0
Q ss_pred CHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCc
Q 001329 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626 (1099)
Q Consensus 547 ~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~ 626 (1099)
. -..+|.. ..+ ---+++++|-.+||++++||+. |+++....++.. ..|.
T Consensus 173 ~-------q~evg~~----------------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa-~tGh 221 (343)
T TIGR01420 173 N-------QREVGLD----------------TLS----FANALRAALREDPDVILIGEMR---DLETVELALTAA-ETGH 221 (343)
T ss_pred E-------ccccCCC----------------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHHH-HcCC
Confidence 0 0000000 001 1234678899999999999997 888877666653 4589
Q ss_pred EEEEEccChhHHHhcCEEEEE
Q 001329 627 SCITISHRPALVAFHDVVLSL 647 (1099)
Q Consensus 627 TvI~ItH~l~~i~~~D~Il~l 647 (1099)
+++.+.|..+.....+|++.+
T Consensus 222 ~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 222 LVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred cEEEEEcCCCHHHHHHHHHHh
Confidence 999999998877766666544
No 479
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.19 E-value=0.00014 Score=89.99 Aligned_cols=293 Identities=11% Similarity=0.030 Sum_probs=172.7
Q ss_pred hhhHHHHhhHHHHHHHhcCCcchhHHh-hcCHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001329 764 VAFLVVSRTWISDRIASLNGTTVKYVL-EQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYL 842 (1099)
Q Consensus 764 c~~~lv~Rt~ls~~va~l~g~~v~~iv-~~~~~~F~~~l~~~~~~~~~~s~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl 842 (1099)
..++.+.-..+++.+.-+-+.++..++ ..+...|...++..+++.+...+.+-.-.|+..+++-++..+|...+++..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~ 102 (576)
T TIGR02204 23 ALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLI 102 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666655666665544 3444445444443333333333334334456666666665666666666655
Q ss_pred cC-CCceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHhh
Q 001329 843 RK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRS 921 (1099)
Q Consensus 843 ~~-~~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~ 921 (1099)
+. ..||.-.+ ..+--.++++|++...+-+.+.+..+..-++-++.+..-+...-..-+.. +.....+...+...
T Consensus 103 ~~~~~~~~~~~----~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~l~~~~~~~ 177 (576)
T TIGR02204 103 SLSPSFFDKNR----SGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL-VLLAVPLVLLPILL 177 (576)
T ss_pred cCCHHHHccCC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHH
Confidence 53 23332111 12234578889888876666665555444444444333332222222222 22233334445566
Q ss_pred cCCcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccc
Q 001329 922 VTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPH 1001 (1099)
Q Consensus 922 ~~P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~ 1001 (1099)
..++..++..+.++.+++++......+.|.|+|..|+..+.+....++.+++..+...+..+...+...+-+++. ++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 255 (576)
T TIGR02204 178 FGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLV-FGA- 255 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-
Confidence 778889999999999999999999999999999999999999999999999888776666555555544443332 121
Q ss_pred hhhhhhhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcChhhHHHHHHHH
Q 001329 1002 NVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEEL 1072 (1099)
Q Consensus 1002 ~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~~k~~~~laG~t~Rv~el~~~ 1072 (1099)
.+.+...+.+.+. .+.. +.++++. ...+.......+..+.....++.+......|+.++++.
T Consensus 256 ~~~~~~~g~~~v~-~g~l----t~g~~~~----~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~ 317 (576)
T TIGR02204 256 IVGVLWVGAHDVI-AGKM----SAGTLGQ----FVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQA 317 (576)
T ss_pred HHHHHHHHHHHHH-cCCC----CHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1122222222221 1111 1233332 22222335678999999999999999999999988764
No 480
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.17 E-value=1.8e-06 Score=92.22 Aligned_cols=28 Identities=36% Similarity=0.621 Sum_probs=26.6
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
++|++++|+||||||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999885
No 481
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.15 E-value=1.7e-07 Score=113.28 Aligned_cols=152 Identities=14% Similarity=0.202 Sum_probs=90.6
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHh--cCcCcCCccEEEeCCCC--ccc---cccEEEEecCCCCCcccHHHHhccCCCC
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVL--GGLWPLVSGHIAKPGVG--SDL---NKEIFYVPQRPYTAVGTLRDQLIYPLTS 539 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL--~Gl~~p~~G~I~i~g~~--~~~---r~~i~~v~Q~p~l~~~Ti~eni~~~~~~ 539 (1099)
-+++|..+.|.|++|||||||..-. .|..++.+.-+.+...+ +++ .+.+|+-.|+..- . +++.+-..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~-~----g~l~~~~~- 90 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVD-E----GKLFILDA- 90 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhh-c----CceEEEec-
Confidence 4789999999999999999999866 45555445555554322 111 1234443332210 0 01111000
Q ss_pred CCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH--HHHccCCCEEEEeCCCCCCCHHHHHHH
Q 001329 540 DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA--RLFYHKPKFAILDECTSAVTTDMEERF 617 (1099)
Q Consensus 540 ~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA--RAL~~~P~iliLDEpTSaLD~~~~~~l 617 (1099)
.........++.+++.+++++.+ ..+|+||+|||.|+ .++..+|+.. ....+.+
T Consensus 91 ------~~~~~~~~~~~~~~l~~~l~~i~--------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l 146 (484)
T TIGR02655 91 ------SPDPEGQDVVGGFDLSALIERIN--------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI 146 (484)
T ss_pred ------CchhccccccccCCHHHHHHHHH--------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence 00001112345566666666655 37999999999999 6666665543 3444445
Q ss_pred HH---HHHhcCcEEEEEccChhH--------H-H-hcCEEEEEe
Q 001329 618 CA---KVRAMGTSCITISHRPAL--------V-A-FHDVVLSLD 648 (1099)
Q Consensus 618 ~~---~l~~~g~TvI~ItH~l~~--------i-~-~~D~Il~l~ 648 (1099)
.+ .+++.|+|+|+++|+.+. + . .+|.|+.|+
T Consensus 147 ~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 147 FRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 44 445679999999998753 1 2 368899886
No 482
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.14 E-value=0.00013 Score=90.17 Aligned_cols=290 Identities=12% Similarity=0.116 Sum_probs=177.0
Q ss_pred hhhHHHHhhHHHHHHHhcCCcchhHHhhcCHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHH----HHH
Q 001329 764 VAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQH----LLK 839 (1099)
Q Consensus 764 c~~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~~~s~~n~~l~~~~~~l~l~~R~rLt~~----~~~ 839 (1099)
+.++.++-..+.+.++..-+.++...+.......+.. +.+..+.+.++..+++|..+.+.-+...++... +++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 95 (571)
T TIGR02203 19 AGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWW---VPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFE 95 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433444443343332222211 111222234455566665555555444444443 333
Q ss_pred HhccC-CCceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Q 001329 840 SYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGF 918 (1099)
Q Consensus 840 ~Yl~~-~~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~ 918 (1099)
.+++. ..+++ +....+.-++++.|++++.+.+++....+.-.++.++++..-+... ++.-..++.....+...+
T Consensus 96 ~~~~~~~~~~~----~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~l~~i~l~~~~l~~~~ 170 (571)
T TIGR02203 96 KLLGLPVSFFD----RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYY-SWQLTLIVVVMLPVLSIL 170 (571)
T ss_pred HHHcCCHHHhC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHH
Confidence 33331 11211 1113445679999999999999888888877777777776655543 222223333444455556
Q ss_pred HhhcCCcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 001329 919 LRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQ 998 (1099)
Q Consensus 919 lr~~~P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky 998 (1099)
...+.++..+...+.++.++++...-.....|.++|--|++.+.+....++.+++..+...+..+...+...+.+++.-
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 249 (571)
T TIGR02203 171 MRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIAS- 249 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 6777888889999999999999999999999999999999999999999999999988888888777777666665532
Q ss_pred ccchhhhhhhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcChhhHHHHHHHH
Q 001329 999 LPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEEL 1072 (1099)
Q Consensus 999 ~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~~k~~~~laG~t~Rv~el~~~ 1072 (1099)
+..++.+.+.+..+.. +. -+.++++--..+. ....+.+.+++..+.++.+..-...|+.++++.
T Consensus 250 ~~~~~~~~~g~~~~~~--g~----lt~g~l~a~~~~~----~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 313 (571)
T TIGR02203 250 LALAVVLFIALFQAQA--GS----LTAGDFTAFITAM----IALIRPLKSLTNVNAPMQRGLAAAESLFTLLDS 313 (571)
T ss_pred HHHHHHHHHHHHHHHc--CC----CCHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2222222222222221 21 1233444333222 235678888899999999999999999887653
No 483
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.13 E-value=2.9e-06 Score=113.72 Aligned_cols=60 Identities=23% Similarity=0.309 Sum_probs=54.7
Q ss_pred CCCcChHHHHHHH----HHHH--------HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccCh
Q 001329 576 GDELSLGEQQRLG----MARL--------FYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRP 635 (1099)
Q Consensus 576 g~~LSGGqrQRla----IARA--------L~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l 635 (1099)
...||||||||++ +|++ +..+|++++|||||++||+.+...+++++.+.|.++|++||++
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccch
Confidence 4689999999996 6766 5579999999999999999999999999999999999999975
No 484
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.09 E-value=0.00041 Score=85.14 Aligned_cols=287 Identities=11% Similarity=0.047 Sum_probs=171.8
Q ss_pred HHhhHHHHHHHhcCCcchhHHh-h-cCHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccC-C
Q 001329 769 VSRTWISDRIASLNGTTVKYVL-E-QDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-N 845 (1099)
Q Consensus 769 v~Rt~ls~~va~l~g~~v~~iv-~-~~~~~F~~~l~~~~~~~~~~s~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~-~ 845 (1099)
++=+.+++...-+-|.++..+. . .+...+...++.++++++..++.+..-.|+..+++.++..+|.+.+++..++- .
T Consensus 13 ~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~ 92 (529)
T TIGR02857 13 ALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGP 92 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 4445555555556666666554 3 23445555554454544445555555566666777777677777777776663 3
Q ss_pred CceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHhhcCCc
Q 001329 846 SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPE 925 (1099)
Q Consensus 846 ~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~~~P~ 925 (1099)
.||. +....+.-.++++|+++..+.+++-...+..-++-++++..-+.. ..+....++...+.+...+.....+.
T Consensus 93 ~~~~----~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~l~~~~l~~~~~~~~~~~ 167 (529)
T TIGR02857 93 GWLQ----GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFP-ADWISGLILLLTAPLIPIFMILIGWA 167 (529)
T ss_pred hhhc----cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 223445667889999998877665444444333333333222221 12222222222222233334455666
Q ss_pred chhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccchhhh
Q 001329 926 FGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTW 1005 (1099)
Q Consensus 926 fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~ 1005 (1099)
..+...++++.++++-..-...+.+.|+|--|+..+.|....++..+++.++..+..+...+.+++-+++ -+++..+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 246 (529)
T TIGR02857 168 AQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF-ATLSVALVA 246 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 7777788888888888888888999999999999999999999999998888877777776666666654 233332222
Q ss_pred hhhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcChhhHHHHHHH
Q 001329 1006 GLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEE 1071 (1099)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~~k~~~~laG~t~Rv~el~~ 1071 (1099)
...+..++ .+. -+.+... ....+.......+..+..++.++.+.-....|+.++++
T Consensus 247 ~~~~~~~~--~g~----~t~g~~~----~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~ 302 (529)
T TIGR02857 247 VYIGFRLL--AGD----LDLATGL----FVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLD 302 (529)
T ss_pred HHHHHHHH--cCC----CCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22222222 221 1122332 22222223456777788888888888888899988875
No 485
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.08 E-value=3.5e-06 Score=99.61 Aligned_cols=103 Identities=19% Similarity=0.146 Sum_probs=69.5
Q ss_pred CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-CccEEEeCCC---C------cccc---ccEEEE-----
Q 001329 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGV---G------SDLN---KEIFYV----- 518 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~---~------~~~r---~~i~~v----- 518 (1099)
+..+++++ |++.+||+++|+|+||||||||++.|+|+.++ +.|.|.+.|. + ..++ .+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 45689998 99999999999999999999999999998854 4467776552 2 1121 235555
Q ss_pred ecCCCCC---c---ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh
Q 001329 519 PQRPYTA---V---GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561 (1099)
Q Consensus 519 ~Q~p~l~---~---~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 561 (1099)
+|+|..- . .++.|.+..-. .+......+..+..++++.+++.
T Consensus 230 ~q~p~~rlnp~~va~~IAE~~r~~g-~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAYVGTAIAEYFRDQG-KTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHHHHHHHHHHHHHcC-CCcchhhhHHHHHHHHHHHhCcC
Confidence 9988532 1 25555554321 11001123457788999999994
No 486
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.07 E-value=4.1e-06 Score=98.79 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=58.7
Q ss_pred CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCC---C------c------cccccEEEEec
Q 001329 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV---G------S------DLNKEIFYVPQ 520 (1099)
Q Consensus 456 ~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~---~------~------~~r~~i~~v~Q 520 (1099)
.+..+++++ +++.+||+++|+|+||||||||+++|+|+.+++.+.+-..|. + + ..|..+++++|
T Consensus 141 TGi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 141 VGVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred cceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 456899999 999999999999999999999999999999988644332232 1 0 12457899999
Q ss_pred CCCCC-cccHHHHhc
Q 001329 521 RPYTA-VGTLRDQLI 534 (1099)
Q Consensus 521 ~p~l~-~~Ti~eni~ 534 (1099)
+...+ ..++.++..
T Consensus 220 d~s~~~rl~a~e~a~ 234 (434)
T PRK07196 220 DESPLMRIKATELCH 234 (434)
T ss_pred CCChhhhHHHHHHHH
Confidence 87544 335555543
No 487
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.05 E-value=0.00029 Score=87.61 Aligned_cols=288 Identities=11% Similarity=0.030 Sum_probs=166.7
Q ss_pred hhHHHHhhHHHHHHHhcCCcchhHHhhcCHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001329 765 AFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK 844 (1099)
Q Consensus 765 ~~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~~~s~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~ 844 (1099)
.++.++-..+++...-+-+.++..++.+ ..+...+..++++.+...+..-...+...+++-++|.++.+.+++..++.
T Consensus 25 ~~~~i~~~~~~~~~~~~~~~iid~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 102 (588)
T PRK13657 25 AVANVLLAAATFAEPILFGRIIDAISGK--GDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQL 102 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333445555555554455566555543 22333333343333333333444445556677777777776666666653
Q ss_pred -CCceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHhhcC
Q 001329 845 -NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVT 923 (1099)
Q Consensus 845 -~~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~~~ 923 (1099)
..++. ..+..+.-+++++|++.+.+...+.+.+++-.++.+++...-+...-..-+ +++...+.+...+.+.+.
T Consensus 103 ~~~~~~----~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~~l~~~~l~~~i~~~~~ 177 (588)
T PRK13657 103 PLAWHS----QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLS-LVLVVLGIVYTLITTLVM 177 (588)
T ss_pred CHHHHC----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 23322 123455678899999988766665555555555554444333322211122 223333344455677778
Q ss_pred CcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccchh
Q 001329 924 PEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNV 1003 (1099)
Q Consensus 924 P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~v 1003 (1099)
|...++..+.++..+++.......+.+.++|.-|+..+.|....++.++++.+......+...+...+.+++ .++....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 256 (588)
T PRK13657 178 RKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAA-STITMLA 256 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 888888888888889999999999999999999999999999999999999998888777777666666643 3332222
Q ss_pred hhhhhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcChhhHHHHHH
Q 001329 1004 TWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELE 1070 (1099)
Q Consensus 1004 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~~k~~~~laG~t~Rv~el~ 1070 (1099)
.+.+.+..++ .+. -+.++.+--..+.. .....+.++.....++.+-.-...|+.+++
T Consensus 257 ~~~~g~~~v~--~g~----lt~g~~~a~~~l~~----~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~ 313 (588)
T PRK13657 257 ILVLGAALVQ--KGQ----LRVGEVVAFVGFAT----LLIGRLDQVVAFINQVFMAAPKLEEFFEVE 313 (588)
T ss_pred HHHHHHHHHH--cCC----cCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222222 121 12345443222222 234556666666666555444445554443
No 488
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.04 E-value=9.7e-06 Score=105.43 Aligned_cols=76 Identities=24% Similarity=0.251 Sum_probs=65.3
Q ss_pred CCCcChHHHHHHHHHHHH------ccC--CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEE
Q 001329 576 GDELSLGEQQRLGMARLF------YHK--PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVV 644 (1099)
Q Consensus 576 g~~LSGGqrQRlaIARAL------~~~--P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~I 644 (1099)
...|||||+=.++||-+| ..+ -++++|||||..||++....+.+.+.+ .+.+||+|||+.++...+|++
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~ 892 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVR 892 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeE
Confidence 357999999877766655 456 799999999999999999998887764 479999999999999999999
Q ss_pred EEEeCCC
Q 001329 645 LSLDGEG 651 (1099)
Q Consensus 645 l~l~~~g 651 (1099)
+.++.++
T Consensus 893 i~V~k~~ 899 (908)
T COG0419 893 IRVKKDG 899 (908)
T ss_pred EEEEecC
Confidence 9998765
No 489
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.03 E-value=4.4e-05 Score=98.33 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=44.4
Q ss_pred HHHHHccCCCEEEEeCCCCCC-CHHHHHHHHHHH---HhcCcEEEEEccChhHHHh
Q 001329 589 MARLFYHKPKFAILDECTSAV-TTDMEERFCAKV---RAMGTSCITISHRPALVAF 640 (1099)
Q Consensus 589 IARAL~~~P~iliLDEpTSaL-D~~~~~~l~~~l---~~~g~TvI~ItH~l~~i~~ 640 (1099)
|+|++..+|+++++|||+.+| |+...+.+.+.+ ++.|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 688899999999999999999 688887776655 4568999999999997754
No 490
>PRK14079 recF recombination protein F; Provisional
Probab=98.01 E-value=1.1e-05 Score=93.61 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=58.0
Q ss_pred CcChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEe
Q 001329 578 ELSLGEQQRLGMARLFY---------HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648 (1099)
Q Consensus 578 ~LSGGqrQRlaIARAL~---------~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1099)
-+|+|||+++++|+.|+ .+|++++||||+|.||......+.+.+.....++|..|+. ..-+|+++.++
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t~~---~~~~~~~~~~~ 339 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGTEA---PPGAALTLRIE 339 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcCCC---CCCCceEEEEe
Confidence 58999999999999998 8999999999999999999999999886554555555543 34578999887
Q ss_pred C
Q 001329 649 G 649 (1099)
Q Consensus 649 ~ 649 (1099)
+
T Consensus 340 ~ 340 (349)
T PRK14079 340 A 340 (349)
T ss_pred c
Confidence 6
No 491
>PRK01889 GTPase RsgA; Reviewed
Probab=98.00 E-value=4.3e-06 Score=97.30 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=62.7
Q ss_pred eeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC---ccccccEEEEecCCCCCcccHHHHhccC
Q 001329 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1099)
Q Consensus 460 vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---~~~r~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1099)
-++.+.-.+++|++++|+|+||+|||||++.|+|..++..|+|.+++.. ...++++++++|+.++++.....++.+.
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l~ 263 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLW 263 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhhccc
Confidence 3566666788999999999999999999999999999999999987632 2234679999999988876666666554
No 492
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.98 E-value=0.00078 Score=83.66 Aligned_cols=290 Identities=12% Similarity=0.109 Sum_probs=177.9
Q ss_pred hHHHHhhHHHHHHHhcCCcchhHHhhcCHHHHHHHHHH-HHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001329 766 FLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGV-SVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK 844 (1099)
Q Consensus 766 ~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~-~~~~~~~~s~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~ 844 (1099)
++.+.-+.+......+-+.++..+...+...+...+.. ++++++...+....-+|+..+++-.+...|.+.+++.+++-
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 111 (582)
T PRK11176 32 VALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGM 111 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344444433333333344444454444434333222 22233333334444445556666666666666666666652
Q ss_pred -CCceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHhhcC
Q 001329 845 -NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVT 923 (1099)
Q Consensus 845 -~~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~~~ 923 (1099)
..++. .....+--+++++|+++..+.+.+....+...++-++.+..-+...-+. -.+++...+.+...+.....
T Consensus 112 ~~~~~~----~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~l~~l~~~~l~~~~~~~~~ 186 (582)
T PRK11176 112 PVSFFD----KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ-LSLILIVIAPIVSIAIRVVS 186 (582)
T ss_pred CHHHhC----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 23332 1123445568999999999998888888887777777776555543322 22233333444445567778
Q ss_pred CcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccchh
Q 001329 924 PEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNV 1003 (1099)
Q Consensus 924 P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~v 1003 (1099)
++..+...+.++..+++.......+.+.++|--|+..+.+....++.++++.++..+..+...+...+-+++.=. ..++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 265 (582)
T PRK11176 187 KRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASL-ALAF 265 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 888999999999999999999999999999999999999999999999999999988888777777766665332 2222
Q ss_pred hhhhhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcChhhHHHHHHH
Q 001329 1004 TWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEE 1071 (1099)
Q Consensus 1004 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~~k~~~~laG~t~Rv~el~~ 1071 (1099)
.+.+.+..+.. +.. +.++++- ...+.......+..+...+..+.+....-.|+.++++
T Consensus 266 i~~~g~~~~~~--g~i----s~g~~~~----~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~ 323 (582)
T PRK11176 266 VLYAASFPSVM--DTL----TAGTITV----VFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILD 323 (582)
T ss_pred HHHHHHHHHHc--CCC----CHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22222222222 211 1334432 2222233456677777777777777777778777664
No 493
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.97 E-value=1e-05 Score=93.98 Aligned_cols=67 Identities=22% Similarity=0.177 Sum_probs=45.9
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCcC--Cc-cEEEeCCCC-----ccccccEEEEecCCC-----CCcccHHHHhcc
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPL--VS-GHIAKPGVG-----SDLNKEIFYVPQRPY-----TAVGTLRDQLIY 535 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p--~~-G~I~i~g~~-----~~~r~~i~~v~Q~p~-----l~~~Ti~eni~~ 535 (1099)
++|..++|+||+||||||++++|++.+.+ .+ +.|.....+ ...+...+.++|... .|...+++.+..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~ 211 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRR 211 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhcc
Confidence 58999999999999999999999999843 33 355443322 123334578888643 344567776654
No 494
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.96 E-value=7.3e-05 Score=87.06 Aligned_cols=164 Identities=23% Similarity=0.369 Sum_probs=111.4
Q ss_pred eEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhc-CcCcCCccEEEeCCCCccccccEEEEecCCCCCccc
Q 001329 450 VKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLG-GLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGT 528 (1099)
Q Consensus 450 v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~-Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~T 528 (1099)
|++..|++. .+.+ +-|++| ++.|||.+=-||||||++|. |.|+.--| ||. . ||--++... .
T Consensus 227 ve~~LP~~g-~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGR-----E---~VVT~~~av--k 288 (448)
T PF09818_consen 227 VEIELPNGG-TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGR-----E---FVVTDPDAV--K 288 (448)
T ss_pred EEEECCCCC-EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCc-----e---EEEECCCce--E
Confidence 555555432 2333 568899 99999999999999999995 77764322 231 1 111111100 0
Q ss_pred HHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCC--CCCcChHHHHHHHHHHHHccCCCEEEEeCCC
Q 001329 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINW--GDELSLGEQQRLGMARLFYHKPKFAILDECT 606 (1099)
Q Consensus 529 i~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~--g~~LSGGqrQRlaIARAL~~~P~iliLDEpT 606 (1099)
| . +.|. .....+++..|++.+|.+..+.. -.+=||-.-|=-.|..|+=..+++|++||=|
T Consensus 289 i----------r-----AEDG---R~V~~vDISpFI~~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDt 350 (448)
T PF09818_consen 289 I----------R-----AEDG---RSVEGVDISPFINNLPGGKDTTCFSTENASGSTSQAANIMEALEAGARLLLIDEDT 350 (448)
T ss_pred E----------E-----ecCC---ceEeCccchHHHhhCCCCCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 0 0 0000 23556789999999998766532 2467999999999999999999999999999
Q ss_pred CCC-----CHHHHHHH--------------HHHHHhcCcEEEEEccChh-HHHhcCEEEEEeC
Q 001329 607 SAV-----TTDMEERF--------------CAKVRAMGTSCITISHRPA-LVAFHDVVLSLDG 649 (1099)
Q Consensus 607 SaL-----D~~~~~~l--------------~~~l~~~g~TvI~ItH~l~-~i~~~D~Il~l~~ 649 (1099)
||- |..+++.+ .++.++.|.++|+|+=-.. .+..+|+|++|++
T Consensus 351 sATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~ 413 (448)
T PF09818_consen 351 SATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDE 413 (448)
T ss_pred cchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecC
Confidence 996 55555543 2223456888777776544 5678999999986
No 495
>PRK08149 ATP synthase SpaL; Validated
Probab=97.91 E-value=2e-05 Score=92.95 Aligned_cols=66 Identities=26% Similarity=0.278 Sum_probs=55.5
Q ss_pred CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCc---cEEEeCCCC----------ccccccEEEEecCC
Q 001329 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS---GHIAKPGVG----------SDLNKEIFYVPQRP 522 (1099)
Q Consensus 456 ~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~---G~I~i~g~~----------~~~r~~i~~v~Q~p 522 (1099)
++.++++++ +++.+||+++|+|+||||||||+++|++..+++. |.|-.+|.+ ...++++++|+...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 456899999 9999999999999999999999999999999887 888888865 11235778887654
No 496
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.90 E-value=3.4e-05 Score=91.78 Aligned_cols=53 Identities=28% Similarity=0.291 Sum_probs=47.0
Q ss_pred cCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCC
Q 001329 454 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV 507 (1099)
Q Consensus 454 y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~ 507 (1099)
+..+..+++++ +.+.+||+++|+|+||+|||||++.|+|..+++.|.+...|.
T Consensus 147 l~TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~ 199 (440)
T TIGR01026 147 LSTGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGE 199 (440)
T ss_pred ccceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEee
Confidence 34566899999 999999999999999999999999999999999887766554
No 497
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.84 E-value=0.0016 Score=81.02 Aligned_cols=288 Identities=12% Similarity=0.049 Sum_probs=162.6
Q ss_pred ehhhHHHHhhHHHHHHHhcCCcchhHHhhcCHHHHHHHHHHHHhhhhhHHHHhhHHH----HHHHHHHHHHHHHHHHHHH
Q 001329 763 AVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIR----HLTARLALGWRIRMTQHLL 838 (1099)
Q Consensus 763 ~c~~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~~~s~~n~~l~----~~~~~l~l~~R~rLt~~~~ 838 (1099)
.+.++.++=+.+.+...-+-|.++..++.++.. ...+..|++. .+++.... +...++...+|.++.+.++
T Consensus 23 ~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 96 (585)
T TIGR01192 23 LIVIANITLAAITIAEPILFGRIIDAISSKSDV--LPTLALWAGF----GVFNTIAYVLVAREADRLAHGRRATLLTEAF 96 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444666667777666777777766655421 1222233222 22333333 3444566666777777777
Q ss_pred HHhcc-CCCceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Q 001329 839 KSYLR-KNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLG 917 (1099)
Q Consensus 839 ~~Yl~-~~~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~ 917 (1099)
+..++ ...||.- ..-.+.=.++|+|++...+.+.+...+++.-++-++++..-+.. +.+.-.+++...+.+...
T Consensus 97 ~~l~~l~~~~~~~----~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~l~~~~~~~~ 171 (585)
T TIGR01192 97 GRIISMPLSWHQQ----RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA-MDWRLSIVLMVLGILYIL 171 (585)
T ss_pred HHHHcCCHHHhCC----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 77776 3455531 22344556899999998877777666666555555544333322 111212222222333344
Q ss_pred HHhhcCCcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 001329 918 FLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTK 997 (1099)
Q Consensus 918 ~lr~~~P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~K 997 (1099)
+.+.+.+...+...+.++..+++...=...+.+.++|--|+..+.|...+++..+++.++..+..+...+...+.+++ -
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 250 (585)
T TIGR01192 172 IAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMA-S 250 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 456666666666666666666666666667899999999999999999999999988877766665555554444433 2
Q ss_pred hccchhhhhhhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcChhhHHHHHHHH
Q 001329 998 QLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEEL 1072 (1099)
Q Consensus 998 y~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~~k~~~~laG~t~Rv~el~~~ 1072 (1099)
++..++-+. .|.+.+. .+.. +.++.+--..+. ......+..+...+.++.+......|+.++++.
T Consensus 251 ~~~~~~v~~-~g~~~v~-~g~i----t~g~l~a~~~~~----~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~ 315 (585)
T TIGR01192 251 TISMMCILV-IGTVLVI-KGEL----SVGEVIAFIGFA----NLLIGRLDQMSGFITQIFEARAKLEDFFDLEDS 315 (585)
T ss_pred HHHHHHHHH-HHHHHHH-cCCC----CHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 222221121 1212111 1211 133443222222 224556667777777777777777788777653
No 498
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.83 E-value=1.9e-05 Score=93.31 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=56.9
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCC
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV 507 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~ 507 (1099)
+.++.++++..+..+..+++++ +.+.+||+++|+|+||+|||||++.|+|..+++.|.+.+.|.
T Consensus 128 ~~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGe 191 (433)
T PRK07594 128 PAMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE 191 (433)
T ss_pred CceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECC
Confidence 3567777777777788899999 999999999999999999999999999999999988877664
No 499
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.82 E-value=6.4e-05 Score=100.26 Aligned_cols=43 Identities=26% Similarity=0.226 Sum_probs=35.6
Q ss_pred eeEEEeCCCEEEEEcCCCCchhHHHHHhcC-cCcCCccEEEeCC
Q 001329 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGG-LWPLVSGHIAKPG 506 (1099)
Q Consensus 464 vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~G-l~~p~~G~I~i~g 506 (1099)
++++.+++++++|+|++|+|||||++.+.+ +.+..+|.+.+++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 466778899999999999999999999955 4455688888765
No 500
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.81 E-value=4.3e-05 Score=94.96 Aligned_cols=117 Identities=12% Similarity=0.117 Sum_probs=73.7
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCcCcCCccE--------EEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCc
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGH--------IAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE 542 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~--------I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~ 542 (1099)
.+.++|+||+|||||||++++.++..+..|+ +.++|.+ + ..++ ..+ .+..++...
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~------l---~~d~----~~i-~~~llg~~~--- 237 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT------L---RWDP----REV-TNPLLGSVH--- 237 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh------c---cCCH----HHH-hHHhcCCcc---
Confidence 4569999999999999999999988765443 4554421 0 0000 001 111222110
Q ss_pred CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001329 543 VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622 (1099)
Q Consensus 543 ~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~ 622 (1099)
....+...+.++..|+.+...+.. .++||| +|+||| +..||+..+..+.+.++
T Consensus 238 --~~~~~~a~~~l~~~gl~~~~~g~v--------~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le 290 (615)
T TIGR02903 238 --DPIYQGARRDLAETGVPEPKTGLV--------TDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLE 290 (615)
T ss_pred --HHHHHHHHHHHHHcCCCchhcCch--------hhcCCC----------------eEEEec-cccCCHHHHHHHHHHHh
Confidence 011223445677778776555544 378888 999999 79999999999999887
Q ss_pred hcCcEEEEEcc
Q 001329 623 AMGTSCITISH 633 (1099)
Q Consensus 623 ~~g~TvI~ItH 633 (1099)
+. .+.++++
T Consensus 291 ~~--~v~~~~~ 299 (615)
T TIGR02903 291 DK--RVEFSSS 299 (615)
T ss_pred hC--eEEeecc
Confidence 52 3444443
Done!