Query 001329
Match_columns 1099
No_of_seqs 741 out of 4260
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 22:33:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 4.6E-70 1.6E-74 717.7 75.3 461 161-650 153-628 (1321)
2 3g5u_A MCG1178, multidrug resi 100.0 1E-64 3.5E-69 665.5 68.6 536 86-650 33-600 (1284)
3 3b5x_A Lipid A export ATP-bind 100.0 7E-63 2.4E-67 602.6 69.3 531 85-650 10-554 (582)
4 3qf4_A ABC transporter, ATP-bi 100.0 1.3E-63 4.4E-68 609.1 61.5 527 89-650 12-553 (587)
5 4a82_A Cystic fibrosis transme 100.0 8.7E-64 3E-68 610.0 59.3 533 88-650 2-551 (578)
6 3qf4_B Uncharacterized ABC tra 100.0 2.9E-64 9.9E-69 616.2 55.0 530 85-650 22-565 (598)
7 3b60_A Lipid A export ATP-bind 100.0 7.6E-63 2.6E-67 602.3 66.9 531 85-650 10-554 (582)
8 2yl4_A ATP-binding cassette SU 100.0 9.4E-63 3.2E-67 603.0 67.6 538 85-650 4-557 (595)
9 4f4c_A Multidrug resistance pr 100.0 1.4E-63 4.9E-68 656.1 46.9 534 86-650 738-1291(1321)
10 3g5u_A MCG1178, multidrug resi 100.0 4.9E-56 1.7E-60 583.2 54.8 536 87-650 692-1245(1284)
11 3nh6_A ATP-binding cassette SU 100.0 7.3E-49 2.5E-53 440.9 23.7 238 401-650 16-264 (306)
12 3tui_C Methionine import ATP-b 100.0 3.3E-46 1.1E-50 426.6 19.8 230 442-718 22-269 (366)
13 2ff7_A Alpha-hemolysin translo 100.0 1.8E-44 6.1E-49 394.5 24.8 202 443-650 6-219 (247)
14 3gfo_A Cobalt import ATP-bindi 100.0 4.1E-44 1.4E-48 397.1 19.7 200 443-650 6-220 (275)
15 3rlf_A Maltose/maltodextrin im 100.0 3.6E-44 1.2E-48 412.2 19.8 198 444-650 3-210 (381)
16 3tif_A Uncharacterized ABC tra 100.0 5.5E-44 1.9E-48 387.9 19.3 199 444-650 1-221 (235)
17 3fvq_A Fe(3+) IONS import ATP- 100.0 1.2E-43 4.2E-48 405.2 22.6 198 444-650 4-215 (359)
18 1mv5_A LMRA, multidrug resista 100.0 1E-43 3.6E-48 387.6 19.6 201 445-650 2-213 (243)
19 2olj_A Amino acid ABC transpor 100.0 2.1E-43 7.1E-48 389.2 20.3 198 444-650 24-235 (263)
20 3gd7_A Fusion complex of cysti 100.0 3.3E-43 1.1E-47 406.7 21.8 202 441-650 16-229 (390)
21 1b0u_A Histidine permease; ABC 100.0 3E-43 1E-47 388.1 19.9 198 444-650 6-229 (262)
22 2pcj_A ABC transporter, lipopr 100.0 4.3E-43 1.5E-47 378.2 19.1 198 444-650 4-215 (224)
23 2ixe_A Antigen peptide transpo 100.0 2.3E-42 8E-47 382.7 25.0 204 442-650 14-232 (271)
24 2yyz_A Sugar ABC transporter, 100.0 8.9E-43 3E-47 399.1 22.0 198 444-650 3-210 (359)
25 1z47_A CYSA, putative ABC-tran 100.0 5.1E-43 1.8E-47 400.2 19.7 200 443-650 13-222 (355)
26 2ghi_A Transport protein; mult 100.0 2.7E-42 9.1E-47 380.1 24.6 201 443-650 16-229 (260)
27 2it1_A 362AA long hypothetical 100.0 7.9E-43 2.7E-47 399.9 18.8 198 444-650 3-210 (362)
28 1v43_A Sugar-binding transport 100.0 2E-42 6.9E-47 397.9 21.1 198 444-650 11-218 (372)
29 4g1u_C Hemin import ATP-bindin 100.0 2.8E-42 9.4E-47 381.1 21.3 197 443-650 10-224 (266)
30 1vpl_A ABC transporter, ATP-bi 100.0 1.6E-42 5.3E-47 380.9 19.1 199 443-650 14-222 (256)
31 2yz2_A Putative ABC transporte 100.0 6.3E-42 2.2E-46 378.4 23.5 198 444-650 2-214 (266)
32 1g6h_A High-affinity branched- 100.0 2.1E-42 7.1E-47 380.4 19.3 199 443-650 6-229 (257)
33 2onk_A Molybdate/tungstate ABC 100.0 2.4E-42 8.3E-47 376.0 18.8 192 445-650 2-203 (240)
34 2pze_A Cystic fibrosis transme 100.0 2.1E-41 7.3E-46 366.2 25.9 194 443-650 5-205 (229)
35 1ji0_A ABC transporter; ATP bi 100.0 6.1E-42 2.1E-46 373.0 21.4 198 443-650 5-215 (240)
36 1oxx_K GLCV, glucose, ABC tran 100.0 3E-42 1E-46 394.6 19.1 198 444-650 3-217 (353)
37 1g29_1 MALK, maltose transport 100.0 4.5E-42 1.5E-46 395.5 19.5 198 444-650 3-216 (372)
38 3d31_A Sulfate/molybdate ABC t 100.0 4.2E-42 1.4E-46 392.3 18.7 194 444-650 1-204 (348)
39 2cbz_A Multidrug resistance-as 100.0 3.1E-41 1E-45 366.8 23.4 193 444-650 3-204 (237)
40 2nq2_C Hypothetical ABC transp 100.0 6.4E-41 2.2E-45 367.6 22.9 192 444-650 4-205 (253)
41 2ihy_A ABC transporter, ATP-bi 100.0 4.2E-41 1.4E-45 374.0 19.2 199 443-650 20-239 (279)
42 1sgw_A Putative ABC transporte 100.0 1.6E-41 5.6E-46 363.1 14.2 193 443-648 9-207 (214)
43 2qi9_C Vitamin B12 import ATP- 100.0 3E-40 1E-44 361.3 20.9 188 444-650 4-209 (249)
44 2d2e_A SUFC protein; ABC-ATPas 100.0 9.8E-41 3.3E-45 365.7 15.8 198 444-650 3-220 (250)
45 2pjz_A Hypothetical protein ST 100.0 7.1E-40 2.4E-44 361.0 19.4 192 444-650 1-202 (263)
46 2zu0_C Probable ATP-dependent 100.0 7E-40 2.4E-44 362.2 19.1 201 442-650 18-241 (267)
47 2bbs_A Cystic fibrosis transme 100.0 8.9E-39 3E-43 356.9 23.9 191 442-650 38-234 (290)
48 3ozx_A RNAse L inhibitor; ATP 100.0 1.8E-33 6.2E-38 338.8 20.7 189 443-650 268-462 (538)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 4E-33 1.4E-37 336.4 18.5 187 443-650 286-478 (538)
50 3bk7_A ABC transporter ATP-bin 100.0 5.4E-33 1.9E-37 338.8 18.5 186 443-649 356-547 (607)
51 3bk7_A ABC transporter ATP-bin 100.0 1.1E-32 3.7E-37 336.2 16.5 189 444-650 83-304 (607)
52 2iw3_A Elongation factor 3A; a 100.0 4E-32 1.4E-36 341.8 19.7 195 443-650 670-974 (986)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 1.3E-32 4.6E-37 331.8 14.5 187 445-649 21-233 (538)
54 3j16_B RLI1P; ribosome recycli 100.0 8.1E-32 2.8E-36 328.0 16.3 184 448-650 350-544 (608)
55 2iw3_A Elongation factor 3A; a 100.0 5.4E-30 1.8E-34 322.6 23.1 184 443-650 434-621 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 2.9E-31 9.8E-36 329.0 10.8 184 458-649 31-278 (670)
57 3j16_B RLI1P; ribosome recycli 100.0 7E-30 2.4E-34 311.0 16.9 186 449-650 82-297 (608)
58 3ozx_A RNAse L inhibitor; ATP 100.0 6.4E-30 2.2E-34 307.9 11.7 183 449-650 4-213 (538)
59 3ux8_A Excinuclease ABC, A sub 100.0 1.2E-28 4E-33 305.6 16.8 177 458-649 335-620 (670)
60 3pih_A Uvrabc system protein A 99.9 1.2E-27 4.1E-32 301.1 17.1 218 444-715 589-914 (916)
61 2npi_A Protein CLP1; CLP1-PCF1 99.9 2.4E-30 8.2E-35 305.9 -11.7 186 443-652 117-327 (460)
62 2vf7_A UVRA2, excinuclease ABC 99.9 1.8E-26 6.2E-31 288.3 15.9 193 443-649 501-807 (842)
63 2r6f_A Excinuclease ABC subuni 99.9 2.9E-26 1E-30 286.6 14.8 187 443-649 628-922 (972)
64 4aby_A DNA repair protein RECN 99.9 4.5E-26 1.5E-30 266.3 14.0 189 459-648 49-369 (415)
65 2v9p_A Replication protein E1; 99.9 1.2E-29 4.2E-34 284.2 -18.1 197 391-650 56-253 (305)
66 2ygr_A Uvrabc system protein A 99.9 1E-25 3.5E-30 282.7 14.8 187 443-649 646-940 (993)
67 3b85_A Phosphate starvation-in 99.9 1.4E-26 4.6E-31 246.7 -8.0 144 458-640 13-163 (208)
68 4gp7_A Metallophosphoesterase; 99.9 1.2E-24 4.2E-29 224.1 4.4 147 463-644 1-168 (171)
69 1e69_A Chromosome segregation 99.9 4.1E-23 1.4E-27 234.0 12.2 189 462-651 16-300 (322)
70 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.2E-21 4E-26 225.8 16.2 74 577-650 278-360 (365)
71 1ye8_A Protein THEP1, hypothet 99.9 9.1E-23 3.1E-27 212.0 3.4 134 473-643 2-152 (178)
72 1tq4_A IIGP1, interferon-induc 99.9 5.4E-24 1.9E-28 247.8 -6.8 166 458-645 36-248 (413)
73 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.6E-22 5.6E-27 229.8 -1.8 128 459-650 159-290 (330)
74 1z6g_A Guanylate kinase; struc 99.8 1.5E-23 5.1E-28 224.6 -9.9 167 459-649 11-193 (218)
75 3aez_A Pantothenate kinase; tr 99.8 4E-23 1.4E-27 233.0 -8.9 167 442-638 41-231 (312)
76 3b9q_A Chloroplast SRP recepto 99.8 1E-21 3.5E-26 220.5 -0.9 167 461-650 90-282 (302)
77 1znw_A Guanylate kinase, GMP k 99.8 2.9E-23 9.9E-28 220.1 -13.3 171 458-649 9-203 (207)
78 3sop_A Neuronal-specific septi 99.8 1.4E-21 4.6E-26 216.3 -0.7 146 473-638 4-153 (270)
79 2og2_A Putative signal recogni 99.8 8.2E-21 2.8E-25 217.4 0.1 165 462-649 148-338 (359)
80 2dpy_A FLII, flagellum-specifi 99.8 3.2E-21 1.1E-25 226.8 -5.3 171 443-649 130-330 (438)
81 3qkt_A DNA double-strand break 99.7 4.2E-18 1.4E-22 194.2 14.0 74 577-650 247-329 (339)
82 1tf7_A KAIC; homohexamer, hexa 99.7 2.1E-20 7.1E-25 225.4 -7.5 168 448-649 16-209 (525)
83 2o8b_B DNA mismatch repair pro 99.7 4.8E-18 1.7E-22 217.5 11.2 160 442-648 748-926 (1022)
84 2jeo_A Uridine-cytidine kinase 99.7 5.7E-19 1.9E-23 192.0 0.8 155 456-636 10-166 (245)
85 2eyu_A Twitching motility prot 99.7 1.1E-18 3.8E-23 192.0 2.3 141 445-649 6-147 (261)
86 1tf7_A KAIC; homohexamer, hexa 99.7 2.2E-18 7.5E-23 207.8 4.3 149 465-649 275-442 (525)
87 1cr0_A DNA primase/helicase; R 99.7 2.5E-18 8.6E-23 191.8 2.9 176 457-650 21-235 (296)
88 1ewq_A DNA mismatch repair pro 99.7 5E-17 1.7E-21 202.5 12.0 145 442-641 548-704 (765)
89 2obl_A ESCN; ATPase, hydrolase 99.7 2E-18 6.8E-23 197.3 -0.6 173 443-649 44-241 (347)
90 4a74_A DNA repair and recombin 99.7 1.1E-17 3.8E-22 178.2 4.4 144 467-650 21-200 (231)
91 2o5v_A DNA replication and rep 99.7 7.3E-17 2.5E-21 184.9 10.2 70 578-650 265-343 (359)
92 3pih_A Uvrabc system protein A 99.7 5.1E-17 1.7E-21 204.9 8.5 146 485-650 382-541 (916)
93 3asz_A Uridine kinase; cytidin 99.7 3.1E-19 1E-23 188.8 -10.1 141 468-635 3-161 (211)
94 2i3b_A HCR-ntpase, human cance 99.6 1.5E-18 5.2E-23 181.9 -7.7 137 471-636 1-150 (189)
95 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 4.5E-16 1.6E-20 156.7 10.6 74 577-650 56-138 (148)
96 2ehv_A Hypothetical protein PH 99.6 1.4E-17 4.8E-22 179.7 -0.6 173 445-649 7-207 (251)
97 3thx_A DNA mismatch repair pro 99.6 5.2E-16 1.8E-20 196.6 13.4 151 443-649 630-799 (934)
98 2qnr_A Septin-2, protein NEDD5 99.6 8.1E-18 2.8E-22 188.9 -4.1 160 448-636 2-168 (301)
99 3thx_B DNA mismatch repair pro 99.6 1.2E-15 4.1E-20 192.7 12.9 154 443-643 639-804 (918)
100 1rj9_A FTSY, signal recognitio 99.6 1.3E-16 4.3E-21 179.3 1.5 145 470-637 101-260 (304)
101 1pzn_A RAD51, DNA repair and r 99.6 3.4E-16 1.2E-20 179.2 2.6 144 456-638 115-289 (349)
102 3jvv_A Twitching mobility prot 99.6 5.3E-16 1.8E-20 177.8 4.0 143 448-649 92-245 (356)
103 1pui_A ENGB, probable GTP-bind 99.6 4.4E-17 1.5E-21 171.2 -4.8 166 444-623 3-195 (210)
104 2qag_C Septin-7; cell cycle, c 99.5 3.2E-16 1.1E-20 183.0 -0.7 163 443-637 10-179 (418)
105 2ygr_A Uvrabc system protein A 99.5 9.8E-15 3.3E-19 183.7 10.9 116 524-649 466-597 (993)
106 2w0m_A SSO2452; RECA, SSPF, un 99.5 1.5E-14 5.3E-19 153.7 10.1 161 456-649 7-191 (235)
107 3szr_A Interferon-induced GTP- 99.5 1.3E-16 4.5E-21 195.3 -7.9 156 444-637 10-198 (608)
108 3kta_B Chromosome segregation 99.5 3E-14 1E-18 147.1 10.9 74 575-648 61-140 (173)
109 1nlf_A Regulatory protein REPA 99.5 2.5E-14 8.6E-19 158.3 10.8 149 467-638 26-184 (279)
110 2r6f_A Excinuclease ABC subuni 99.5 2.5E-14 8.6E-19 179.4 10.9 89 553-649 486-580 (972)
111 1lw7_A Transcriptional regulat 99.5 8.6E-17 2.9E-21 185.2 -12.0 152 460-643 157-337 (365)
112 2vf7_A UVRA2, excinuclease ABC 99.5 4.8E-14 1.6E-18 176.6 11.5 88 554-649 362-455 (842)
113 2gza_A Type IV secretion syste 99.5 2.2E-15 7.5E-20 173.3 -1.1 148 446-650 137-302 (361)
114 2f1r_A Molybdopterin-guanine d 99.5 1.4E-16 4.8E-21 164.3 -10.3 104 472-599 3-124 (171)
115 1wb9_A DNA mismatch repair pro 99.5 8.1E-14 2.8E-18 174.6 10.4 151 443-644 576-739 (800)
116 1lvg_A Guanylate kinase, GMP k 99.4 3.8E-17 1.3E-21 172.1 -17.0 153 468-649 1-173 (198)
117 2ewv_A Twitching motility prot 99.4 1.3E-14 4.3E-19 167.6 2.1 128 459-647 126-256 (372)
118 2cvh_A DNA repair and recombin 99.4 2.5E-13 8.6E-18 143.5 11.2 150 456-650 4-185 (220)
119 1s96_A Guanylate kinase, GMP k 99.4 2.5E-14 8.7E-19 153.2 1.7 126 466-640 11-145 (219)
120 1zp6_A Hypothetical protein AT 99.4 1.4E-15 4.8E-20 157.8 -9.9 136 467-623 5-146 (191)
121 4ad8_A DNA repair protein RECN 99.4 4.6E-13 1.6E-17 161.1 8.6 73 578-650 396-473 (517)
122 2qag_B Septin-6, protein NEDD5 99.4 7.5E-14 2.6E-18 162.6 1.3 181 444-633 16-217 (427)
123 1odf_A YGR205W, hypothetical 3 99.4 1.8E-14 6.2E-19 160.7 -3.7 132 470-613 30-169 (290)
124 2qm8_A GTPase/ATPase; G protei 99.3 5.3E-15 1.8E-19 168.5 -13.7 168 446-623 31-257 (337)
125 2yhs_A FTSY, cell division pro 99.3 1.5E-13 5.3E-18 161.9 -2.1 150 461-633 283-447 (503)
126 1nij_A Hypothetical protein YJ 99.3 1.9E-15 6.4E-20 170.9 -18.7 144 472-636 5-190 (318)
127 2bbw_A Adenylate kinase 4, AK4 99.3 1.4E-14 4.7E-19 157.3 -11.3 139 470-623 26-195 (246)
128 2rcn_A Probable GTPase ENGC; Y 99.3 4.6E-13 1.6E-17 153.0 0.5 120 459-593 204-328 (358)
129 1n0w_A DNA repair protein RAD5 99.3 4.9E-12 1.7E-16 135.6 8.1 141 467-649 20-208 (243)
130 1p9r_A General secretion pathw 99.3 1.1E-14 3.7E-19 170.2 -14.3 142 445-601 144-314 (418)
131 3auy_A DNA double-strand break 99.2 1.6E-11 5.5E-16 141.5 10.8 75 578-652 280-363 (371)
132 3e70_C DPA, signal recognition 99.2 3.9E-13 1.3E-17 152.4 -3.5 141 467-634 125-278 (328)
133 1htw_A HI0065; nucleotide-bind 99.2 8.6E-13 3E-17 134.2 -1.1 82 449-534 12-96 (158)
134 3c8u_A Fructokinase; YP_612366 99.2 9.2E-14 3.1E-18 147.1 -9.8 141 468-637 19-160 (208)
135 2yv5_A YJEQ protein; hydrolase 99.2 3.7E-12 1.3E-16 142.9 1.7 115 467-591 161-300 (302)
136 1w1w_A Structural maintenance 99.2 3.6E-11 1.2E-15 141.3 10.0 72 578-649 333-411 (430)
137 1sxj_E Activator 1 40 kDa subu 99.2 1.4E-11 4.6E-16 140.2 5.9 133 472-637 37-176 (354)
138 3lda_A DNA repair protein RAD5 99.1 6.9E-11 2.4E-15 137.4 8.8 142 467-650 174-363 (400)
139 3ec2_A DNA replication protein 99.1 6.5E-12 2.2E-16 129.3 -0.1 109 465-636 32-144 (180)
140 1udx_A The GTP-binding protein 99.1 1.1E-11 3.7E-16 144.7 -1.3 156 461-633 147-306 (416)
141 1u0l_A Probable GTPase ENGC; p 99.1 2E-11 6.8E-16 136.9 0.9 100 466-569 164-290 (301)
142 2kjq_A DNAA-related protein; s 99.1 1.5E-10 5.2E-15 116.4 7.0 36 459-500 29-64 (149)
143 2oap_1 GSPE-2, type II secreti 99.0 1.2E-12 4.2E-17 156.7 -10.4 171 458-640 247-455 (511)
144 2bdt_A BH3686; alpha-beta prot 99.0 8.7E-13 3E-17 136.9 -13.2 153 471-645 2-168 (189)
145 2x8a_A Nuclear valosin-contain 99.0 6.8E-13 2.3E-17 146.8 -15.1 139 459-623 34-192 (274)
146 1sq5_A Pantothenate kinase; P- 99.0 1.6E-12 5.6E-17 146.1 -12.7 89 443-535 36-151 (308)
147 1t9h_A YLOQ, probable GTPase E 98.9 1.8E-10 6.2E-15 129.2 0.9 111 466-586 168-303 (307)
148 1ls1_A Signal recognition part 98.9 9.3E-10 3.2E-14 123.0 5.0 131 445-623 77-208 (295)
149 1in4_A RUVB, holliday junction 98.9 9.4E-12 3.2E-16 141.4 -11.6 149 448-623 22-191 (334)
150 3lnc_A Guanylate kinase, GMP k 98.8 7.4E-12 2.5E-16 134.4 -13.5 39 459-497 15-54 (231)
151 1vma_A Cell division protein F 98.8 9.6E-10 3.3E-14 123.4 3.0 98 464-607 97-197 (306)
152 3euj_A Chromosome partition pr 98.8 2.2E-09 7.6E-14 127.0 5.3 59 446-508 8-66 (483)
153 3tr0_A Guanylate kinase, GMP k 98.8 8.9E-10 3.1E-14 115.1 0.3 120 465-605 1-127 (205)
154 3k1j_A LON protease, ATP-depen 98.8 4.9E-10 1.7E-14 137.2 -2.0 158 456-623 45-227 (604)
155 2dr3_A UPF0273 protein PH0284; 98.6 1.3E-07 4.6E-12 101.1 12.9 166 456-649 7-196 (247)
156 2px0_A Flagellar biosynthesis 98.6 1E-07 3.5E-12 106.5 9.4 126 469-644 103-236 (296)
157 2r6a_A DNAB helicase, replicat 98.6 2.3E-08 8E-13 118.2 4.2 170 456-651 188-400 (454)
158 1iy2_A ATP-dependent metallopr 98.5 9.2E-11 3.2E-15 129.5 -16.4 131 446-599 51-190 (278)
159 2ius_A DNA translocase FTSK; n 98.5 3.1E-09 1.1E-13 126.6 -4.7 157 463-636 159-343 (512)
160 1oix_A RAS-related protein RAB 98.5 5.2E-09 1.8E-13 108.6 -4.0 37 585-623 152-188 (191)
161 1ixz_A ATP-dependent metallopr 98.5 1.3E-10 4.3E-15 126.3 -17.1 136 446-606 27-171 (254)
162 1qhl_A Protein (cell division 98.5 4E-09 1.4E-13 113.4 -5.2 69 444-521 9-91 (227)
163 1svm_A Large T antigen; AAA+ f 98.4 7.8E-10 2.7E-14 127.5 -12.5 142 459-607 157-312 (377)
164 2zr9_A Protein RECA, recombina 98.3 5.2E-07 1.8E-11 103.1 6.6 131 456-635 44-198 (349)
165 1cke_A CK, MSSA, protein (cyti 98.3 1.4E-08 4.9E-13 107.7 -6.3 120 470-607 4-151 (227)
166 4e22_A Cytidylate kinase; P-lo 98.3 5.1E-08 1.7E-12 106.2 -2.5 54 469-522 25-96 (252)
167 3nwj_A ATSK2; P loop, shikimat 98.3 6.8E-08 2.3E-12 105.3 -1.5 53 443-495 16-72 (250)
168 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 8.3E-08 2.9E-12 111.0 -2.0 151 467-649 16-198 (392)
169 2qtf_A Protein HFLX, GTP-bindi 98.2 1.4E-07 4.8E-12 108.4 -0.2 143 473-623 181-350 (364)
170 3kta_A Chromosome segregation 98.2 1.1E-06 3.9E-11 89.9 4.8 102 460-562 14-137 (182)
171 2j41_A Guanylate kinase; GMP, 98.1 5.2E-07 1.8E-11 94.0 1.7 57 466-522 1-60 (207)
172 3uie_A Adenylyl-sulfate kinase 98.1 9E-08 3.1E-12 100.2 -5.5 49 457-506 11-61 (200)
173 2f9l_A RAB11B, member RAS onco 98.0 2.7E-07 9.2E-12 95.9 -2.8 35 587-623 130-164 (199)
174 2ce7_A Cell division protein F 98.0 4.2E-06 1.4E-10 99.3 6.6 112 459-638 39-167 (476)
175 3ney_A 55 kDa erythrocyte memb 98.0 6.2E-07 2.1E-11 94.2 -0.6 65 466-536 14-97 (197)
176 3a00_A Guanylate kinase, GMP k 98.0 1.7E-06 5.8E-11 89.5 2.2 30 471-500 1-30 (186)
177 4a1f_A DNAB helicase, replicat 98.0 9.3E-06 3.2E-10 92.2 8.4 132 457-633 32-164 (338)
178 2dy1_A Elongation factor G; tr 98.0 8E-07 2.7E-11 109.9 -0.5 128 465-637 3-138 (665)
179 3tqc_A Pantothenate kinase; bi 98.0 2.3E-07 8E-12 104.6 -5.2 128 459-610 74-210 (321)
180 1jjv_A Dephospho-COA kinase; P 97.9 3.1E-06 1.1E-10 88.5 3.0 125 473-649 4-132 (206)
181 2qt1_A Nicotinamide riboside k 97.9 6.8E-06 2.3E-10 86.1 5.5 50 466-535 16-65 (207)
182 2e87_A Hypothetical protein PH 97.9 8.3E-06 2.8E-10 93.3 6.0 58 578-636 231-293 (357)
183 3vaa_A Shikimate kinase, SK; s 97.8 5.1E-06 1.8E-10 86.7 2.8 38 458-495 12-49 (199)
184 3b5x_A Lipid A export ATP-bind 97.8 0.0011 3.8E-08 80.7 23.5 289 769-1073 35-325 (582)
185 2xau_A PRE-mRNA-splicing facto 97.8 7.9E-06 2.7E-10 102.7 4.5 62 578-639 190-256 (773)
186 3hr8_A Protein RECA; alpha and 97.8 7.1E-06 2.4E-10 93.8 3.4 47 456-502 44-92 (356)
187 2dhr_A FTSH; AAA+ protein, hex 97.8 2.2E-07 7.4E-12 110.8 -9.5 126 458-607 53-187 (499)
188 3t34_A Dynamin-related protein 97.8 4.3E-05 1.5E-09 87.3 9.3 43 459-504 25-69 (360)
189 1zu4_A FTSY; GTPase, signal re 97.8 5.7E-06 2E-10 93.3 1.8 48 461-508 95-142 (320)
190 3b60_A Lipid A export ATP-bind 97.8 0.001 3.5E-08 80.9 21.7 288 769-1072 35-324 (582)
191 1kgd_A CASK, peripheral plasma 97.8 7.3E-06 2.5E-10 84.2 2.1 35 469-503 3-38 (180)
192 3ice_A Transcription terminati 97.7 5E-06 1.7E-10 95.1 0.4 55 442-496 131-199 (422)
193 1fnn_A CDC6P, cell division co 97.7 8E-05 2.7E-09 84.8 10.2 43 595-638 124-172 (389)
194 4eun_A Thermoresistant glucoki 97.7 1E-05 3.4E-10 84.5 2.2 39 465-507 23-61 (200)
195 3bh0_A DNAB-like replicative h 97.6 8E-05 2.7E-09 83.7 7.2 131 456-633 53-189 (315)
196 1rz3_A Hypothetical protein rb 97.5 1.4E-05 4.9E-10 83.5 0.7 40 468-507 19-58 (201)
197 2vp4_A Deoxynucleoside kinase; 97.5 2.8E-05 9.6E-10 83.1 2.9 39 466-508 15-53 (230)
198 2yl4_A ATP-binding cassette SU 97.5 0.0022 7.4E-08 78.3 18.9 244 813-1072 77-321 (595)
199 2z43_A DNA repair and recombin 97.5 0.00029 9.9E-09 79.3 10.2 132 467-635 103-258 (324)
200 3b9p_A CG5977-PA, isoform A; A 97.4 0.0005 1.7E-08 75.8 11.3 69 580-648 97-187 (297)
201 3tau_A Guanylate kinase, GMP k 97.4 5.3E-05 1.8E-09 79.7 3.3 29 469-497 6-34 (208)
202 2ffh_A Protein (FFH); SRP54, s 97.4 0.00012 4E-09 85.6 6.2 149 462-633 91-246 (425)
203 3qf4_B Uncharacterized ABC tra 97.4 0.0017 5.9E-08 79.2 16.7 293 764-1072 42-336 (598)
204 4a82_A Cystic fibrosis transme 97.4 0.0028 9.6E-08 77.0 18.2 291 766-1072 21-320 (578)
205 2qby_A CDC6 homolog 1, cell di 97.4 9.2E-05 3.2E-09 83.9 4.6 31 469-499 43-73 (386)
206 1v5w_A DMC1, meiotic recombina 97.3 0.00052 1.8E-08 78.0 10.4 132 467-635 118-274 (343)
207 3cr8_A Sulfate adenylyltranfer 97.3 3.5E-05 1.2E-09 93.0 0.8 42 466-507 364-407 (552)
208 3qf4_A ABC transporter, ATP-bi 97.3 0.0071 2.4E-07 73.6 20.6 293 764-1072 28-322 (587)
209 1knq_A Gluconate kinase; ALFA/ 97.3 5.3E-05 1.8E-09 76.8 1.5 34 469-506 6-39 (175)
210 1w1w_A Structural maintenance 97.3 8.4E-05 2.9E-09 87.0 2.8 50 444-500 6-55 (430)
211 3kl4_A SRP54, signal recogniti 97.2 0.00037 1.3E-08 81.5 7.6 35 470-504 96-130 (433)
212 3m6a_A ATP-dependent protease 97.1 7.1E-05 2.4E-09 90.4 0.5 48 459-507 97-144 (543)
213 1kag_A SKI, shikimate kinase I 97.1 0.00016 5.4E-09 73.0 2.5 28 470-497 3-30 (173)
214 4fcw_A Chaperone protein CLPB; 97.1 0.00084 2.9E-08 74.2 8.2 31 472-502 48-78 (311)
215 1ypw_A Transitional endoplasmi 97.1 0.00041 1.4E-08 87.6 6.2 31 466-496 233-263 (806)
216 2pez_A Bifunctional 3'-phospho 97.0 0.00015 5.3E-09 73.8 1.2 37 469-506 3-41 (179)
217 3lxx_A GTPase IMAP family memb 97.0 0.0028 9.6E-08 67.6 11.1 29 473-501 31-59 (239)
218 2z4s_A Chromosomal replication 97.0 0.00055 1.9E-08 80.4 5.8 41 595-635 193-237 (440)
219 2p67_A LAO/AO transport system 96.9 0.0001 3.5E-09 83.7 -0.8 46 458-503 43-88 (341)
220 1f6b_A SAR1; gtpases, N-termin 96.9 0.00026 9E-09 73.3 1.6 41 452-493 7-47 (198)
221 1m7g_A Adenylylsulfate kinase; 96.8 0.00021 7.2E-09 75.0 0.4 41 466-506 20-62 (211)
222 3cf0_A Transitional endoplasmi 96.8 0.0017 5.8E-08 72.2 7.4 30 466-495 44-73 (301)
223 4eaq_A DTMP kinase, thymidylat 96.8 0.00044 1.5E-08 74.1 2.4 42 461-503 13-57 (229)
224 4ad8_A DNA repair protein RECN 96.7 0.00039 1.3E-08 83.4 1.9 34 460-494 50-83 (517)
225 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00067 2.3E-08 67.7 3.3 30 462-492 15-44 (149)
226 2www_A Methylmalonic aciduria 96.7 0.0004 1.4E-08 79.1 1.3 35 470-504 73-107 (349)
227 3h4m_A Proteasome-activating n 96.6 0.0018 6.3E-08 70.7 6.3 28 468-495 48-75 (285)
228 1l8q_A Chromosomal replication 96.5 0.0024 8.2E-08 71.3 6.3 29 470-498 36-64 (324)
229 3llm_A ATP-dependent RNA helic 96.5 0.00058 2E-08 72.9 1.0 123 468-618 73-199 (235)
230 1m2o_B GTP-binding protein SAR 96.4 0.0015 5E-08 67.1 3.7 34 459-493 12-45 (190)
231 1u94_A RECA protein, recombina 96.4 0.011 3.8E-07 67.4 10.9 41 455-495 45-87 (356)
232 1y63_A LMAJ004144AAA protein; 96.4 0.0013 4.3E-08 67.5 2.8 32 463-494 2-33 (184)
233 1njg_A DNA polymerase III subu 96.3 0.0088 3E-07 62.2 9.0 41 595-636 125-167 (250)
234 2qor_A Guanylate kinase; phosp 96.3 0.0012 4E-08 68.9 2.2 30 467-496 8-37 (204)
235 2q6t_A DNAB replication FORK h 96.3 0.0065 2.2E-07 71.3 8.7 41 456-496 185-225 (444)
236 2gj8_A MNME, tRNA modification 96.3 0.0021 7.3E-08 64.8 4.0 27 469-495 2-28 (172)
237 1j8m_F SRP54, signal recogniti 96.3 0.00066 2.2E-08 75.7 -0.1 43 462-505 89-132 (297)
238 2yvu_A Probable adenylyl-sulfa 96.3 0.0012 4E-08 67.6 1.8 35 468-502 10-44 (186)
239 1mky_A Probable GTP-binding pr 96.3 0.0026 8.9E-08 74.6 4.9 35 473-507 182-228 (439)
240 2i1q_A DNA repair and recombin 96.2 0.0096 3.3E-07 66.6 9.0 27 467-493 94-120 (322)
241 2ohf_A Protein OLA1, GTP-bindi 96.2 0.0024 8.3E-08 73.8 3.9 40 467-506 18-68 (396)
242 4dcu_A GTP-binding protein ENG 96.1 0.0033 1.1E-07 74.1 4.6 58 581-638 87-144 (456)
243 3qks_A DNA double-strand break 96.0 0.0031 1.1E-07 66.0 3.4 29 463-492 16-44 (203)
244 2v1u_A Cell division control p 96.0 0.0073 2.5E-07 68.2 6.6 29 469-497 42-70 (387)
245 2qag_A Septin-2, protein NEDD5 96.0 0.00082 2.8E-08 76.9 -1.4 54 443-503 16-69 (361)
246 2b8t_A Thymidine kinase; deoxy 95.9 0.0091 3.1E-07 63.7 6.8 51 596-648 89-150 (223)
247 2if2_A Dephospho-COA kinase; a 95.9 0.0028 9.4E-08 65.7 2.3 21 473-493 3-23 (204)
248 1np6_A Molybdopterin-guanine d 95.8 0.0037 1.3E-07 64.1 2.7 35 472-506 7-44 (174)
249 2wjg_A FEOB, ferrous iron tran 95.7 0.0051 1.7E-07 62.2 3.7 22 473-494 9-30 (188)
250 2wji_A Ferrous iron transport 95.7 0.0072 2.5E-07 60.2 4.7 24 473-496 5-28 (165)
251 2zej_A Dardarin, leucine-rich 95.7 0.0049 1.7E-07 62.6 3.3 26 473-498 4-29 (184)
252 3t61_A Gluconokinase; PSI-biol 95.7 0.0026 9E-08 65.9 1.1 25 471-495 18-42 (202)
253 1sxj_C Activator 1 40 kDa subu 95.6 0.0011 3.8E-08 74.7 -1.9 44 457-500 30-75 (340)
254 2p5t_B PEZT; postsegregational 95.6 0.0024 8.3E-08 69.0 0.7 38 467-506 28-65 (253)
255 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0016 5.4E-08 74.1 -0.8 38 459-496 10-49 (359)
256 3r20_A Cytidylate kinase; stru 95.6 0.0025 8.7E-08 68.5 0.8 24 471-494 9-32 (233)
257 1q3t_A Cytidylate kinase; nucl 95.5 0.0032 1.1E-07 67.2 1.1 26 469-494 14-39 (236)
258 1qhx_A CPT, protein (chloramph 95.4 0.0069 2.4E-07 61.0 3.3 26 471-496 3-28 (178)
259 3cm0_A Adenylate kinase; ATP-b 95.4 0.0053 1.8E-07 62.4 2.4 26 469-494 2-27 (186)
260 1lv7_A FTSH; alpha/beta domain 95.3 0.005 1.7E-07 66.3 1.7 33 462-496 38-70 (257)
261 3kb2_A SPBC2 prophage-derived 95.2 0.0081 2.8E-07 59.9 2.9 23 473-495 3-25 (173)
262 1ega_A Protein (GTP-binding pr 95.2 0.0056 1.9E-07 68.1 1.7 26 470-495 7-32 (301)
263 1xp8_A RECA protein, recombina 95.2 0.058 2E-06 61.7 10.1 38 456-493 57-96 (366)
264 4ag6_A VIRB4 ATPase, type IV s 95.0 0.007 2.4E-07 69.7 2.1 48 457-505 19-69 (392)
265 2jaq_A Deoxyguanosine kinase; 95.0 0.0096 3.3E-07 61.1 2.8 24 473-496 2-25 (205)
266 1kht_A Adenylate kinase; phosp 95.0 0.011 3.8E-07 60.0 3.2 25 471-495 3-27 (192)
267 1gtv_A TMK, thymidylate kinase 94.9 0.004 1.4E-07 64.7 -0.4 26 473-498 2-27 (214)
268 3trf_A Shikimate kinase, SK; a 94.9 0.012 4E-07 59.8 3.2 26 470-495 4-29 (185)
269 3bgw_A DNAB-like replicative h 94.9 0.016 5.6E-07 68.0 4.7 128 457-632 183-317 (444)
270 3dm5_A SRP54, signal recogniti 94.8 0.1 3.5E-06 61.0 11.2 41 470-523 99-139 (443)
271 3lw7_A Adenylate kinase relate 94.8 0.013 4.4E-07 58.1 3.1 19 473-491 3-21 (179)
272 1uf9_A TT1252 protein; P-loop, 94.8 0.0092 3.2E-07 61.3 1.9 23 472-494 9-31 (203)
273 2rhm_A Putative kinase; P-loop 94.8 0.011 3.8E-07 60.2 2.5 27 469-495 3-29 (193)
274 3io5_A Recombination and repai 94.7 0.082 2.8E-06 59.2 9.5 55 582-636 93-173 (333)
275 3d8b_A Fidgetin-like protein 1 94.7 0.053 1.8E-06 61.6 8.1 27 469-495 115-141 (357)
276 3auy_A DNA double-strand break 94.7 0.015 5.1E-07 66.6 3.5 31 461-492 16-46 (371)
277 1jal_A YCHF protein; nucleotid 94.6 0.02 6.8E-07 65.4 4.4 36 471-506 2-48 (363)
278 1gvn_B Zeta; postsegregational 94.6 0.015 5.1E-07 64.2 3.1 35 470-506 32-66 (287)
279 3iij_A Coilin-interacting nucl 94.5 0.015 5.1E-07 58.9 2.8 26 469-494 9-34 (180)
280 1vht_A Dephospho-COA kinase; s 94.5 0.016 5.5E-07 60.7 2.9 24 470-493 3-26 (218)
281 3pfi_A Holliday junction ATP-d 94.5 0.16 5.4E-06 56.6 11.2 24 472-495 56-79 (338)
282 1ex7_A Guanylate kinase; subst 94.4 0.013 4.6E-07 60.6 2.2 23 474-496 4-26 (186)
283 2v54_A DTMP kinase, thymidylat 94.4 0.019 6.6E-07 59.0 3.3 26 470-495 3-28 (204)
284 1via_A Shikimate kinase; struc 94.4 0.016 5.3E-07 58.6 2.5 23 473-495 6-28 (175)
285 3ihw_A Centg3; RAS, centaurin, 94.3 0.033 1.1E-06 56.6 4.8 28 473-500 22-54 (184)
286 2c95_A Adenylate kinase 1; tra 94.3 0.019 6.4E-07 58.6 2.9 27 469-495 7-33 (196)
287 2wwf_A Thymidilate kinase, put 94.3 0.02 6.9E-07 59.2 3.1 27 469-495 8-34 (212)
288 2ze6_A Isopentenyl transferase 94.2 0.016 5.3E-07 62.8 2.2 23 473-495 3-25 (253)
289 1ly1_A Polynucleotide kinase; 94.1 0.021 7.3E-07 57.2 2.9 22 472-493 3-24 (181)
290 2plr_A DTMP kinase, probable t 94.1 0.021 7.3E-07 58.8 2.9 27 470-496 3-29 (213)
291 1ko7_A HPR kinase/phosphatase; 94.1 0.032 1.1E-06 62.4 4.6 34 459-493 133-166 (314)
292 1fzq_A ADP-ribosylation factor 94.1 0.026 9E-07 57.0 3.5 22 473-494 18-39 (181)
293 1nn5_A Similar to deoxythymidy 94.1 0.023 7.7E-07 58.9 3.1 28 468-495 6-33 (215)
294 1xjc_A MOBB protein homolog; s 94.0 0.02 7E-07 58.3 2.3 26 472-497 5-30 (169)
295 2vli_A Antibiotic resistance p 93.8 0.023 7.8E-07 57.3 2.5 26 470-495 4-29 (183)
296 1tev_A UMP-CMP kinase; ploop, 93.8 0.026 8.8E-07 57.3 2.8 25 471-495 3-27 (196)
297 3ake_A Cytidylate kinase; CMP 93.8 0.02 6.7E-07 59.0 1.8 23 473-495 4-26 (208)
298 1nks_A Adenylate kinase; therm 93.7 0.026 9E-07 57.1 2.7 24 473-496 3-26 (194)
299 2bwj_A Adenylate kinase 5; pho 93.7 0.023 7.9E-07 58.1 2.3 28 468-495 9-36 (199)
300 1ojl_A Transcriptional regulat 93.7 0.073 2.5E-06 59.1 6.4 28 469-496 23-50 (304)
301 1zuh_A Shikimate kinase; alpha 93.6 0.032 1.1E-06 55.7 3.1 23 472-494 8-30 (168)
302 3k53_A Ferrous iron transport 93.6 0.029 9.9E-07 61.1 2.8 24 473-496 5-28 (271)
303 2z0h_A DTMP kinase, thymidylat 93.4 0.034 1.2E-06 56.7 2.9 24 473-496 2-25 (197)
304 1jr3_A DNA polymerase III subu 93.4 0.24 8.1E-06 55.7 10.1 40 596-636 119-160 (373)
305 3q72_A GTP-binding protein RAD 93.3 0.038 1.3E-06 54.2 3.0 24 473-496 4-27 (166)
306 1aky_A Adenylate kinase; ATP:A 93.3 0.04 1.4E-06 57.8 3.3 27 469-495 2-28 (220)
307 2iyv_A Shikimate kinase, SK; t 93.3 0.034 1.1E-06 56.4 2.6 24 472-495 3-26 (184)
308 3fb4_A Adenylate kinase; psych 93.2 0.037 1.3E-06 57.6 2.9 23 473-495 2-24 (216)
309 3bos_A Putative DNA replicatio 93.2 0.031 1.1E-06 58.5 2.2 27 470-496 51-77 (242)
310 1e6c_A Shikimate kinase; phosp 93.2 0.035 1.2E-06 55.4 2.5 24 472-495 3-26 (173)
311 1zd8_A GTP:AMP phosphotransfer 93.1 0.04 1.4E-06 58.1 3.0 27 469-495 5-31 (227)
312 2cdn_A Adenylate kinase; phosp 93.1 0.046 1.6E-06 56.4 3.3 25 471-495 20-44 (201)
313 2pt5_A Shikimate kinase, SK; a 93.1 0.042 1.4E-06 54.6 2.9 23 473-495 2-24 (168)
314 2erx_A GTP-binding protein DI- 93.0 0.045 1.5E-06 53.7 3.1 21 473-493 5-25 (172)
315 2nzj_A GTP-binding protein REM 93.0 0.045 1.5E-06 54.1 3.1 23 473-495 6-28 (175)
316 3tw8_B RAS-related protein RAB 93.0 0.048 1.6E-06 54.1 3.3 22 473-494 11-32 (181)
317 1qvr_A CLPB protein; coiled co 93.0 0.11 3.7E-06 66.0 7.3 28 472-499 589-616 (854)
318 2w58_A DNAI, primosome compone 93.0 0.04 1.4E-06 56.7 2.7 26 472-497 55-80 (202)
319 1z2a_A RAS-related protein RAB 93.0 0.038 1.3E-06 54.1 2.4 22 473-494 7-28 (168)
320 2ged_A SR-beta, signal recogni 93.0 0.039 1.3E-06 55.9 2.5 24 472-495 49-72 (193)
321 2pbr_A DTMP kinase, thymidylat 92.9 0.044 1.5E-06 55.6 2.9 23 473-495 2-24 (195)
322 3dl0_A Adenylate kinase; phosp 92.9 0.044 1.5E-06 57.1 2.9 23 473-495 2-24 (216)
323 2dby_A GTP-binding protein; GD 92.9 0.042 1.4E-06 62.9 2.9 23 473-495 3-25 (368)
324 1a7j_A Phosphoribulokinase; tr 92.9 0.03 1E-06 61.9 1.7 26 470-495 4-29 (290)
325 1zak_A Adenylate kinase; ATP:A 92.9 0.041 1.4E-06 57.7 2.6 26 470-495 4-29 (222)
326 3q85_A GTP-binding protein REM 92.8 0.049 1.7E-06 53.6 3.0 23 473-495 4-26 (169)
327 2grj_A Dephospho-COA kinase; T 92.8 0.046 1.6E-06 56.7 2.9 23 472-494 13-35 (192)
328 2ce2_X GTPase HRAS; signaling 92.8 0.04 1.4E-06 53.5 2.2 22 473-494 5-26 (166)
329 1ukz_A Uridylate kinase; trans 92.7 0.046 1.6E-06 56.3 2.7 24 472-495 16-39 (203)
330 2dyk_A GTP-binding protein; GT 92.7 0.044 1.5E-06 53.3 2.5 23 473-495 3-25 (161)
331 1kao_A RAP2A; GTP-binding prot 92.7 0.044 1.5E-06 53.4 2.5 21 473-493 5-25 (167)
332 1qf9_A UMP/CMP kinase, protein 92.7 0.047 1.6E-06 55.2 2.7 25 471-495 6-30 (194)
333 2lkc_A Translation initiation 92.7 0.06 2.1E-06 53.4 3.5 25 470-494 7-31 (178)
334 1u8z_A RAS-related protein RAL 92.7 0.045 1.5E-06 53.4 2.4 22 473-494 6-27 (168)
335 3lxw_A GTPase IMAP family memb 92.6 0.051 1.7E-06 58.4 3.0 24 473-496 23-46 (247)
336 1uj2_A Uridine-cytidine kinase 92.6 0.05 1.7E-06 58.5 2.9 23 473-495 24-46 (252)
337 3b1v_A Ferrous iron uptake tra 92.6 0.052 1.8E-06 59.4 3.1 23 473-495 5-27 (272)
338 1jbk_A CLPB protein; beta barr 92.6 0.06 2E-06 53.7 3.2 28 469-496 41-68 (195)
339 1z0j_A RAB-22, RAS-related pro 92.6 0.048 1.6E-06 53.5 2.5 23 473-495 8-30 (170)
340 3pqc_A Probable GTP-binding pr 92.5 0.05 1.7E-06 54.8 2.6 23 473-495 25-47 (195)
341 1svi_A GTP-binding protein YSX 92.5 0.05 1.7E-06 55.1 2.6 23 472-494 24-46 (195)
342 1z08_A RAS-related protein RAB 92.5 0.049 1.7E-06 53.6 2.5 22 473-494 8-29 (170)
343 3cmw_A Protein RECA, recombina 92.5 0.21 7.3E-06 67.1 9.2 31 467-497 728-758 (1706)
344 1ek0_A Protein (GTP-binding pr 92.5 0.049 1.7E-06 53.3 2.4 22 473-494 5-26 (170)
345 1ky3_A GTP-binding protein YPT 92.5 0.05 1.7E-06 54.0 2.5 22 473-494 10-31 (182)
346 1g16_A RAS-related protein SEC 92.4 0.047 1.6E-06 53.6 2.2 22 473-494 5-26 (170)
347 1c1y_A RAS-related protein RAP 92.4 0.05 1.7E-06 53.2 2.4 21 473-493 5-25 (167)
348 3t5d_A Septin-7; GTP-binding p 92.4 0.057 2E-06 58.8 3.1 23 473-495 10-32 (274)
349 3a4m_A L-seryl-tRNA(SEC) kinas 92.4 0.056 1.9E-06 58.5 2.9 26 470-495 3-28 (260)
350 1moz_A ARL1, ADP-ribosylation 92.4 0.05 1.7E-06 54.3 2.4 22 472-493 19-40 (183)
351 1wms_A RAB-9, RAB9, RAS-relate 92.3 0.053 1.8E-06 53.8 2.5 22 473-494 9-30 (177)
352 2fn4_A P23, RAS-related protei 92.3 0.05 1.7E-06 53.9 2.3 22 473-494 11-32 (181)
353 3a8t_A Adenylate isopentenyltr 92.3 0.079 2.7E-06 59.8 4.1 30 470-502 39-68 (339)
354 2cxx_A Probable GTP-binding pr 92.3 0.057 1.9E-06 54.2 2.6 22 473-494 3-24 (190)
355 3cmu_A Protein RECA, recombina 92.3 0.2 6.9E-06 68.2 8.6 38 455-492 1063-1102(2050)
356 3t1o_A Gliding protein MGLA; G 92.2 0.057 2E-06 54.4 2.6 24 473-496 16-39 (198)
357 3cmw_A Protein RECA, recombina 92.1 0.36 1.2E-05 64.9 10.6 39 456-494 366-406 (1706)
358 3euj_A Chromosome partition pr 92.1 0.19 6.6E-06 59.4 7.2 70 577-648 378-464 (483)
359 1r2q_A RAS-related protein RAB 92.1 0.059 2E-06 52.7 2.4 21 473-493 8-28 (170)
360 3tlx_A Adenylate kinase 2; str 92.0 0.065 2.2E-06 57.4 2.9 26 470-495 28-53 (243)
361 3clv_A RAB5 protein, putative; 92.0 0.061 2.1E-06 54.3 2.5 22 473-494 9-30 (208)
362 2f6r_A COA synthase, bifunctio 92.0 0.063 2.1E-06 59.0 2.7 22 472-493 76-97 (281)
363 3cbq_A GTP-binding protein REM 92.0 0.072 2.5E-06 54.6 3.0 23 473-495 25-47 (195)
364 2hxs_A RAB-26, RAS-related pro 92.0 0.071 2.4E-06 52.9 2.9 22 473-494 8-29 (178)
365 4dsu_A GTPase KRAS, isoform 2B 91.9 0.062 2.1E-06 53.8 2.5 22 473-494 6-27 (189)
366 3bc1_A RAS-related protein RAB 91.9 0.062 2.1E-06 53.9 2.4 21 473-493 13-33 (195)
367 2oil_A CATX-8, RAS-related pro 91.8 0.064 2.2E-06 54.3 2.4 22 473-494 27-48 (193)
368 1upt_A ARL1, ADP-ribosylation 91.8 0.065 2.2E-06 52.7 2.4 22 472-493 8-29 (171)
369 1r8s_A ADP-ribosylation factor 91.8 0.066 2.2E-06 52.4 2.4 21 473-493 2-22 (164)
370 2qmh_A HPR kinase/phosphorylas 91.8 0.11 3.6E-06 54.5 4.0 34 460-494 24-57 (205)
371 2y8e_A RAB-protein 6, GH09086P 91.7 0.064 2.2E-06 53.1 2.2 21 473-493 16-36 (179)
372 3iby_A Ferrous iron transport 91.7 0.072 2.5E-06 57.7 2.8 23 473-495 3-25 (256)
373 1q57_A DNA primase/helicase; d 91.7 0.33 1.1E-05 57.7 8.7 33 461-493 232-264 (503)
374 1ksh_A ARF-like protein 2; sma 91.6 0.09 3.1E-06 52.8 3.2 24 471-494 18-41 (186)
375 1z0f_A RAB14, member RAS oncog 91.6 0.072 2.5E-06 52.7 2.4 22 473-494 17-38 (179)
376 2a9k_A RAS-related protein RAL 91.6 0.071 2.4E-06 53.1 2.4 21 473-493 20-40 (187)
377 2p65_A Hypothetical protein PF 91.6 0.07 2.4E-06 53.2 2.3 29 469-497 41-69 (187)
378 2g6b_A RAS-related protein RAB 91.6 0.072 2.5E-06 52.9 2.4 22 473-494 12-33 (180)
379 2xtp_A GTPase IMAP family memb 91.5 0.079 2.7E-06 56.9 2.9 22 473-494 24-45 (260)
380 3con_A GTPase NRAS; structural 91.5 0.073 2.5E-06 53.7 2.4 22 473-494 23-44 (190)
381 2h57_A ADP-ribosylation factor 91.5 0.086 2.9E-06 53.3 2.9 23 473-495 23-45 (190)
382 3be4_A Adenylate kinase; malar 91.5 0.083 2.8E-06 55.3 2.9 26 470-495 4-29 (217)
383 3n70_A Transport activator; si 91.4 0.088 3E-06 51.6 2.9 38 596-634 76-115 (145)
384 2efe_B Small GTP-binding prote 91.4 0.077 2.6E-06 52.8 2.5 22 473-494 14-35 (181)
385 2il1_A RAB12; G-protein, GDP, 91.4 0.096 3.3E-06 53.3 3.2 22 473-494 28-49 (192)
386 2xb4_A Adenylate kinase; ATP-b 91.3 0.089 3E-06 55.5 2.9 23 473-495 2-24 (223)
387 1e4v_A Adenylate kinase; trans 91.3 0.084 2.9E-06 55.0 2.7 23 473-495 2-24 (214)
388 3t5g_A GTP-binding protein RHE 91.2 0.12 4.1E-06 51.5 3.7 20 473-492 8-27 (181)
389 4bas_A ADP-ribosylation factor 91.2 0.1 3.5E-06 52.8 3.2 22 473-494 19-40 (199)
390 1sky_E F1-ATPase, F1-ATP synth 91.2 0.048 1.6E-06 64.2 0.8 43 457-500 138-180 (473)
391 2bme_A RAB4A, RAS-related prot 91.2 0.077 2.6E-06 53.1 2.2 22 473-494 12-33 (186)
392 2h92_A Cytidylate kinase; ross 91.2 0.074 2.5E-06 55.4 2.2 25 471-495 3-27 (219)
393 4dhe_A Probable GTP-binding pr 91.2 0.057 1.9E-06 56.1 1.3 24 472-495 30-53 (223)
394 1wf3_A GTP-binding protein; GT 91.2 0.092 3.1E-06 58.3 3.0 22 473-494 9-30 (301)
395 1nrj_B SR-beta, signal recogni 91.1 0.083 2.8E-06 54.7 2.4 23 473-495 14-36 (218)
396 1zbd_A Rabphilin-3A; G protein 91.1 0.1 3.5E-06 53.3 3.0 22 473-494 10-31 (203)
397 2qu8_A Putative nucleolar GTP- 91.1 0.11 3.6E-06 54.7 3.2 22 473-494 31-52 (228)
398 2bov_A RAla, RAS-related prote 91.1 0.085 2.9E-06 53.7 2.4 21 473-493 16-36 (206)
399 2gf9_A RAS-related protein RAB 91.0 0.087 3E-06 53.2 2.4 22 473-494 24-45 (189)
400 3i8s_A Ferrous iron transport 91.0 0.094 3.2E-06 57.2 2.9 23 473-495 5-27 (274)
401 1vg8_A RAS-related protein RAB 91.0 0.087 3E-06 53.8 2.5 22 473-494 10-31 (207)
402 3kkq_A RAS-related protein M-R 91.0 0.088 3E-06 52.6 2.4 21 473-493 20-40 (183)
403 2qz4_A Paraplegin; AAA+, SPG7, 91.0 0.1 3.6E-06 55.6 3.1 26 470-495 38-63 (262)
404 3pxi_A Negative regulator of g 91.0 0.43 1.5E-05 59.6 9.2 23 473-495 523-545 (758)
405 3tkl_A RAS-related protein RAB 91.0 0.089 3E-06 53.1 2.4 22 473-494 18-39 (196)
406 2fg5_A RAB-22B, RAS-related pr 90.9 0.086 2.9E-06 53.6 2.3 22 473-494 25-46 (192)
407 3d3q_A TRNA delta(2)-isopenten 90.9 0.097 3.3E-06 59.2 2.9 24 473-496 9-32 (340)
408 2gf0_A GTP-binding protein DI- 90.9 0.086 2.9E-06 53.4 2.3 21 473-493 10-30 (199)
409 3a1s_A Iron(II) transport prot 90.9 0.1 3.6E-06 56.5 3.1 23 473-495 7-29 (258)
410 1a5t_A Delta prime, HOLB; zinc 90.9 0.49 1.7E-05 53.0 8.7 40 596-636 108-149 (334)
411 1ak2_A Adenylate kinase isoenz 90.8 0.12 4E-06 54.8 3.3 26 470-495 15-40 (233)
412 3zvl_A Bifunctional polynucleo 90.8 0.11 3.9E-06 60.2 3.5 28 468-495 255-282 (416)
413 1m7b_A RND3/RHOE small GTP-bin 90.8 0.088 3E-06 53.0 2.2 22 473-494 9-30 (184)
414 1mh1_A RAC1; GTP-binding, GTPa 90.8 0.093 3.2E-06 52.3 2.4 21 473-493 7-27 (186)
415 1zj6_A ADP-ribosylation factor 90.8 0.11 3.7E-06 52.4 2.8 21 473-493 18-38 (187)
416 1z06_A RAS-related protein RAB 90.8 0.096 3.3E-06 52.9 2.5 21 473-493 22-42 (189)
417 2o52_A RAS-related protein RAB 90.7 0.11 3.7E-06 53.3 2.8 22 473-494 27-48 (200)
418 3iev_A GTP-binding protein ERA 90.6 0.11 3.8E-06 57.7 3.0 22 473-494 12-33 (308)
419 3v9p_A DTMP kinase, thymidylat 90.6 0.11 3.7E-06 55.5 2.7 28 469-496 23-50 (227)
420 2h17_A ADP-ribosylation factor 90.6 0.1 3.4E-06 52.4 2.4 22 473-494 23-44 (181)
421 3exa_A TRNA delta(2)-isopenten 90.5 0.11 3.9E-06 58.0 2.9 26 471-496 3-28 (322)
422 3oes_A GTPase rhebl1; small GT 90.5 0.096 3.3E-06 53.6 2.2 22 473-494 26-47 (201)
423 3bwd_D RAC-like GTP-binding pr 90.5 0.1 3.5E-06 51.9 2.4 22 472-493 9-30 (182)
424 1ltq_A Polynucleotide kinase; 90.5 0.11 3.9E-06 56.9 2.9 22 472-493 3-24 (301)
425 2r62_A Cell division protease 90.5 0.035 1.2E-06 59.9 -1.2 29 465-495 40-68 (268)
426 3dz8_A RAS-related protein RAB 90.5 0.098 3.4E-06 53.0 2.2 22 473-494 25-46 (191)
427 3cnl_A YLQF, putative uncharac 90.5 0.12 4.2E-06 56.2 3.1 30 472-501 100-129 (262)
428 2a5j_A RAS-related protein RAB 90.5 0.1 3.6E-06 52.8 2.4 22 473-494 23-44 (191)
429 2cjw_A GTP-binding protein GEM 90.5 0.1 3.6E-06 53.3 2.4 22 473-494 8-29 (192)
430 3llu_A RAS-related GTP-binding 90.4 0.13 4.4E-06 52.5 3.0 24 473-496 22-45 (196)
431 2f7s_A C25KG, RAS-related prot 90.3 0.13 4.5E-06 53.1 3.1 22 473-494 27-48 (217)
432 2b6h_A ADP-ribosylation factor 90.3 0.13 4.6E-06 52.3 3.0 22 472-493 30-51 (192)
433 2fu5_C RAS-related protein RAB 90.3 0.095 3.2E-06 52.4 1.9 22 473-494 10-31 (183)
434 1jwy_B Dynamin A GTPase domain 90.3 0.12 4E-06 57.1 2.8 23 473-495 26-48 (315)
435 3reg_A RHO-like small GTPase; 90.2 0.11 3.9E-06 52.6 2.4 22 473-494 25-46 (194)
436 1x3s_A RAS-related protein RAB 90.2 0.11 3.9E-06 52.2 2.4 22 473-494 17-38 (195)
437 2atv_A RERG, RAS-like estrogen 90.2 0.11 3.9E-06 52.7 2.5 22 473-494 30-51 (196)
438 2q3h_A RAS homolog gene family 90.2 0.14 4.6E-06 52.2 3.0 22 473-494 22-43 (201)
439 2ew1_A RAS-related protein RAB 90.2 0.11 3.6E-06 53.8 2.2 21 473-493 28-48 (201)
440 3cph_A RAS-related protein SEC 90.2 0.11 3.9E-06 53.2 2.4 21 473-493 22-42 (213)
441 1zd9_A ADP-ribosylation factor 90.2 0.11 3.9E-06 52.4 2.4 21 473-493 24-44 (188)
442 3def_A T7I23.11 protein; chlor 90.2 0.13 4.3E-06 55.7 2.9 23 473-495 38-60 (262)
443 2bcg_Y Protein YP2, GTP-bindin 90.2 0.11 3.7E-06 53.3 2.2 22 473-494 10-31 (206)
444 2p5s_A RAS and EF-hand domain 90.2 0.11 3.9E-06 52.9 2.4 22 473-494 30-51 (199)
445 2j1l_A RHO-related GTP-binding 90.1 0.13 4.4E-06 53.4 2.9 21 473-493 36-56 (214)
446 2wsm_A Hydrogenase expression/ 90.1 0.11 3.8E-06 53.9 2.3 23 473-495 32-54 (221)
447 1ypw_A Transitional endoplasmi 90.1 0.049 1.7E-06 68.7 -0.6 33 464-496 504-536 (806)
448 2fv8_A H6, RHO-related GTP-bin 90.0 0.11 3.9E-06 53.4 2.3 22 473-494 27-48 (207)
449 3crm_A TRNA delta(2)-isopenten 90.0 0.13 4.5E-06 57.7 2.9 25 472-496 6-30 (323)
450 4djt_A GTP-binding nuclear pro 90.0 0.093 3.2E-06 54.3 1.6 22 473-494 13-34 (218)
451 1h65_A Chloroplast outer envel 90.0 0.13 4.5E-06 55.8 2.8 23 473-495 41-63 (270)
452 4edh_A DTMP kinase, thymidylat 89.9 0.14 4.8E-06 54.0 2.9 28 469-496 4-31 (213)
453 2orv_A Thymidine kinase; TP4A 89.9 0.66 2.3E-05 49.5 8.0 51 595-648 89-150 (234)
454 2x77_A ADP-ribosylation factor 89.8 0.13 4.4E-06 51.9 2.4 22 472-493 23-44 (189)
455 1sxj_D Activator 1 41 kDa subu 89.8 0.056 1.9E-06 60.4 -0.4 40 596-636 133-174 (353)
456 3lv8_A DTMP kinase, thymidylat 89.8 0.15 5.2E-06 54.6 3.1 27 470-496 26-52 (236)
457 2iwr_A Centaurin gamma 1; ANK 89.7 0.1 3.4E-06 51.9 1.6 21 473-493 9-29 (178)
458 3tqf_A HPR(Ser) kinase; transf 89.7 0.2 6.7E-06 51.3 3.6 26 468-493 13-38 (181)
459 3c5c_A RAS-like protein 12; GD 89.7 0.13 4.6E-06 52.0 2.5 21 473-493 23-43 (187)
460 2fh5_B SR-beta, signal recogni 89.7 0.13 4.5E-06 53.0 2.4 23 472-494 8-30 (214)
461 2aka_B Dynamin-1; fusion prote 89.6 0.14 4.7E-06 56.0 2.6 23 473-495 28-50 (299)
462 3co5_A Putative two-component 89.6 0.13 4.3E-06 50.4 2.1 27 470-496 26-52 (143)
463 1gwn_A RHO-related GTP-binding 89.5 0.13 4.4E-06 53.3 2.2 22 473-494 30-51 (205)
464 2gco_A H9, RHO-related GTP-bin 89.4 0.13 4.5E-06 52.6 2.2 22 473-494 27-48 (201)
465 1p5z_B DCK, deoxycytidine kina 89.4 0.13 4.5E-06 55.4 2.3 28 469-496 22-49 (263)
466 2zts_A Putative uncharacterize 89.3 0.21 7E-06 52.6 3.7 26 467-492 26-51 (251)
467 2ocp_A DGK, deoxyguanosine kin 89.3 0.16 5.4E-06 54.0 2.8 27 470-496 1-27 (241)
468 4tmk_A Protein (thymidylate ki 89.3 0.18 6.1E-06 53.2 3.1 27 470-496 2-28 (213)
469 3syl_A Protein CBBX; photosynt 89.2 0.18 6.1E-06 55.3 3.1 26 471-496 67-92 (309)
470 2atx_A Small GTP binding prote 89.1 0.15 5.1E-06 51.6 2.3 22 473-494 20-41 (194)
471 3cmu_A Protein RECA, recombina 89.1 0.74 2.5E-05 62.8 9.5 41 456-496 366-408 (2050)
472 3ld9_A DTMP kinase, thymidylat 89.1 0.18 6E-06 53.7 2.9 28 469-496 19-46 (223)
473 1r6b_X CLPA protein; AAA+, N-t 89.1 0.33 1.1E-05 60.7 5.8 124 469-649 486-652 (758)
474 3uk6_A RUVB-like 2; hexameric 89.0 0.17 5.7E-06 57.1 2.8 30 469-498 68-97 (368)
475 2g3y_A GTP-binding protein GEM 89.0 0.19 6.4E-06 52.7 3.1 22 473-494 39-60 (211)
476 2yc2_C IFT27, small RAB-relate 88.9 0.097 3.3E-06 53.3 0.8 22 473-494 22-43 (208)
477 3tmk_A Thymidylate kinase; pho 88.9 0.19 6.6E-06 53.1 3.1 29 469-497 3-31 (216)
478 3foz_A TRNA delta(2)-isopenten 88.9 0.18 6.2E-06 56.2 2.9 25 472-496 11-35 (316)
479 2v3c_C SRP54, signal recogniti 88.8 0.081 2.8E-06 61.9 0.0 26 472-497 100-125 (432)
480 2eyu_A Twitching motility prot 88.7 0.00068 2.3E-08 74.1 -16.5 58 577-636 171-241 (261)
481 2hf9_A Probable hydrogenase ni 88.5 0.17 5.8E-06 52.7 2.2 22 473-494 40-61 (226)
482 3umf_A Adenylate kinase; rossm 88.5 0.16 5.6E-06 53.7 2.1 28 468-495 26-53 (217)
483 2chg_A Replication factor C sm 88.4 0.21 7E-06 51.0 2.8 41 595-636 101-143 (226)
484 3l0o_A Transcription terminati 88.4 0.12 4.3E-06 59.1 1.3 51 445-495 138-199 (427)
485 1lw7_A Transcriptional regulat 88.3 0.096 3.3E-06 59.6 0.2 31 576-606 294-329 (365)
486 2hup_A RAS-related protein RAB 88.1 0.19 6.4E-06 51.6 2.3 21 473-493 31-51 (201)
487 3hws_A ATP-dependent CLP prote 88.0 0.21 7.3E-06 56.5 2.9 24 472-495 52-75 (363)
488 4gzl_A RAS-related C3 botulinu 88.0 0.22 7.5E-06 51.2 2.7 22 472-493 31-52 (204)
489 1xwi_A SKD1 protein; VPS4B, AA 88.0 0.24 8.3E-06 55.3 3.2 26 470-495 44-69 (322)
490 3cpj_B GTP-binding protein YPT 87.9 0.21 7.1E-06 52.1 2.5 22 473-494 15-36 (223)
491 1d2n_A N-ethylmaleimide-sensit 87.8 0.2 6.9E-06 54.1 2.4 25 470-494 63-87 (272)
492 3pvs_A Replication-associated 87.8 0.15 5.1E-06 59.9 1.5 38 595-633 105-142 (447)
493 1ofh_A ATP-dependent HSL prote 87.7 0.23 8E-06 54.1 2.9 25 471-495 50-74 (310)
494 3eph_A TRNA isopentenyltransfe 87.7 0.22 7.5E-06 57.5 2.7 25 472-496 3-27 (409)
495 3l0i_B RAS-related protein RAB 87.6 0.11 3.7E-06 53.1 0.0 22 473-494 35-56 (199)
496 3eie_A Vacuolar protein sortin 87.5 0.26 9E-06 54.8 3.2 26 470-495 50-75 (322)
497 3q3j_B RHO-related GTP-binding 87.5 0.22 7.6E-06 51.7 2.4 21 473-493 29-49 (214)
498 2bjv_A PSP operon transcriptio 87.5 0.29 9.8E-06 52.6 3.4 28 470-497 28-55 (265)
499 2ewv_A Twitching motility prot 87.4 0.0019 6.5E-08 74.2 -14.8 59 577-637 282-353 (372)
500 3t15_A Ribulose bisphosphate c 87.2 0.26 9.1E-06 54.2 3.0 24 472-495 37-60 (293)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.6e-70 Score=717.70 Aligned_cols=461 Identities=17% Similarity=0.208 Sum_probs=362.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 161 HSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYT 239 (1099)
Q Consensus 161 ~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~ 239 (1099)
.++..++..+.+.+ +..++|.++|+|++++|++|||++ .++..+|+++|++.+.+.+...+..++..++.. +..
T Consensus 153 ~~~~~~~~~~~~~r----~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~-i~~ 227 (1321)
T 4f4c_A 153 GQITVTCYLYVAEQ----MNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQF-ITG 227 (1321)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 34444444445544 788899999999999999999864 679999999999998776666565555555433 233
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 001329 240 WRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKA 319 (1099)
Q Consensus 240 ~~L~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~ 319 (1099)
.+++++++|.+++++++.+|+..++...++++..+...+.++..++.....++...++++||+|+.|+.+.+++.+..++
T Consensus 228 ~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 307 (1321)
T 4f4c_A 228 FIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEE 307 (1321)
T ss_dssp HHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHH
Confidence 45567789999999998889888888889999999888888888888888889999999999999999998666655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 320 LTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSI 398 (1099)
Q Consensus 320 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~ 398 (1099)
..+... +.....++..+..........+++++ +++.+ ..+..+.| .+++++. ++..+..|+..+..
T Consensus 308 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~v~~g~lt~g--~~~~~~~----~~~~~~~~l~~~~~ 374 (1321)
T 4f4c_A 308 AKKAGV---LKGLFLGISFGAMQASNFISFALAFY----IGVGWVHDGSLNFG--DMLTTFS----SVMMGSMALGLAGP 374 (1321)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTTSSCHH--HHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCCcHH--HHHHHHH----HHHHHHHHHHHHHH
Confidence 443322 22233333333222222222233333 22222 22344555 3344332 33445577888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEE
Q 001329 399 SSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLI 476 (1099)
Q Consensus 399 ~~~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~--~~~vL~~vsl~i~~Ge~vaI 476 (1099)
.+..++++.++++|++++++.+++.+.+.... ....+..+.|+|+||+|.||+ ++++|+|+||+|++||+++|
T Consensus 375 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~-----~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vai 449 (1321)
T 4f4c_A 375 QLAVLGTAQGAASGIYEVLDRKPVIDSSSKAG-----RKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVAL 449 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCC-----CCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccccc-----ccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEE
Confidence 88999999999999999998776544221111 111123467999999999975 46899999999999999999
Q ss_pred EcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHH
Q 001329 477 TGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGG 550 (1099)
Q Consensus 477 vG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~ 550 (1099)
|||||||||||+++|+|+|+|++|+|.+||.+ +.+|++|+||+|+|++|++||+|||.++.+. .++++
T Consensus 450 vG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~------~~~~~ 523 (1321)
T 4f4c_A 450 VGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEG------ITREE 523 (1321)
T ss_dssp EECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTT------CCHHH
T ss_pred EecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhccc------chHHH
Confidence 99999999999999999999999999999975 4578899999999999999999999998643 57899
Q ss_pred HHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cC
Q 001329 551 MVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MG 625 (1099)
Q Consensus 551 i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g 625 (1099)
+.++++.++++++++++|+++++ +.|.+|||||||||+||||++++|+|+||||||||||+++|..+++.+++ .|
T Consensus 524 v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~ 603 (1321)
T 4f4c_A 524 MVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKG 603 (1321)
T ss_dssp HHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999987665 46889999999999999999999999999999999999999999999876 49
Q ss_pred cEEEEEccChhHHHhcCEEEEEeCC
Q 001329 626 TSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 626 ~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+|+|+||||+++++.||+|++|+++
T Consensus 604 ~T~iiiaHrls~i~~aD~Iivl~~G 628 (1321)
T 4f4c_A 604 RTTIIIAHRLSTIRNADLIISCKNG 628 (1321)
T ss_dssp SEEEEECSCTTTTTTCSEEEEEETT
T ss_pred CEEEEEcccHHHHHhCCEEEEeeCC
Confidence 9999999999999999999999875
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1e-64 Score=665.46 Aligned_cols=536 Identities=17% Similarity=0.185 Sum_probs=388.4
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----------------hHHHHHHH
Q 001329 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRV-----------------PLFFQLIS 148 (1099)
Q Consensus 86 ~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~-----------------~~~~~~l~ 148 (1099)
..++++++|..++.+ ..+++.++++++...+....+.+.+.+++.+..... ..+...+.
T Consensus 33 ~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (1284)
T 3g5u_A 33 VSVLTMFRYAGWLDR----LYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMT 108 (1284)
T ss_dssp CTTHHHHTCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHH
Confidence 345666666644322 134445555566566666778888888776642210 00111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHH
Q 001329 149 ENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQD 227 (1099)
Q Consensus 149 ~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~ 227 (1099)
.+.++.+++.++..+..|+...+......++..++|.++|++++++|++||+++ .++..+|+++|++.+.+.+...+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~ 188 (1284)
T 3g5u_A 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGM 188 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222223333444444444444455888999999999999999999875 5699999999999988877777766
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH
Q 001329 228 DLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN 307 (1099)
Q Consensus 228 ~l~~il~~i~~~~~L~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~ 307 (1099)
++..++.. +..+.++++.+|.+++++++.+|++.++..++.+...+...+.++..++......+...++++||+|+.|+
T Consensus 189 ~~~~~~~~-i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~ 267 (1284)
T 3g5u_A 189 FFQAMATF-FGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQK 267 (1284)
T ss_dssp HHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCC
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchH
Confidence 66655433 23345667889999999999999888888888888888888888887777777777777999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHH
Q 001329 308 KEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVI 386 (1099)
Q Consensus 308 ~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~i 386 (1099)
.+.+++.+..++..+...+ .....+...++...+.....+++++++ +.+. .+..+.|.. ++.+. .+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~lv~~g~~~~g~~--~~~~~----~~ 334 (1284)
T 3g5u_A 268 KELERYNNNLEEAKRLGIK---KAITANISMGAAFLLIYASYALAFWYG----TSLVISKEYSIGQV--LTVFF----SV 334 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHT---TTHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHSSSCSSCH--HHHHH----HH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHcCCCCHHHH--HHHHH----HH
Confidence 9987666665554443222 222223333322222222223333322 2111 122344432 22211 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC--Cceeeee
Q 001329 387 ISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENL 464 (1099)
Q Consensus 387 ~~~~~~l~~l~~~~~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~--~~vL~~v 464 (1099)
.....++..+...+..++++.++++|++++++.+++........ .......+.|+++||+|.|+++ .++|+|+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~-----~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~i 409 (1284)
T 3g5u_A 335 LIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSG-----HKPDNIQGNLEFKNIHFSYPSRKEVQILKGL 409 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSC-----CCCTTCCCCEEEEEEEECCSSTTSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccC-----CCCCCCCCeEEEEEEEEEcCCCCCCcceecc
Confidence 23345677777788889999999999999998765433211000 0011124679999999999753 4799999
Q ss_pred eEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCC
Q 001329 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 538 (1099)
Q Consensus 465 sl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~ 538 (1099)
||+|++||+++||||||||||||+++|+|+++|++|+|.+||.+ .++|++|+||||+|++|++||+|||.++.+
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~ 489 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE 489 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999975 356788999999999999999999999754
Q ss_pred CCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001329 539 SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615 (1099)
Q Consensus 539 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~ 615 (1099)
. .+++++.++++.++++++++++|.+.++ +.|.+|||||||||+|||||+++|+|||||||||+||+++++
T Consensus 490 ~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~ 563 (1284)
T 3g5u_A 490 D------VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563 (1284)
T ss_dssp S------CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHH
T ss_pred C------CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 2 4678899999999999999999986554 357899999999999999999999999999999999999999
Q ss_pred HHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 616 RFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 616 ~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
.+++.+++ .|+|+|+||||++++..||+|++|+++
T Consensus 564 ~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G 600 (1284)
T 3g5u_A 564 VVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGG 600 (1284)
T ss_dssp HHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSS
T ss_pred HHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECC
Confidence 99988864 499999999999999999999999865
No 3
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7e-63 Score=602.60 Aligned_cols=531 Identities=15% Similarity=0.185 Sum_probs=398.0
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS 164 (1099)
Q Consensus 85 ~~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 164 (1099)
++.+++++++++++++. ++..+++.++..++....|.+.++++|.+......... ....++++++.++..+.
T Consensus 10 ~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 81 (582)
T 3b5x_A 10 WQTFKRLWTYIRLYKAG-----LVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFL---RILPFMILGLMFVRGLS 81 (582)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHH---HHHHHHHHHHHHHHHHH
Confidence 55678888899888763 44455566666777788899999999887642211111 11111112222334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1099)
Q Consensus 165 ~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~ 243 (1099)
.++..++..+....+..++|.++|+++.+.|+++|++. .++..+|+++|++.+...+...+...+..++..+. ...++
T Consensus 82 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~-~~~~l 160 (582)
T 3b5x_A 82 GFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIG-LLTLM 160 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 55555555555566888999999999999999999864 56899999999999887766666666555544333 23445
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 001329 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1099)
Q Consensus 244 ~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~ 323 (1099)
++++|.+++++++.+|+..++...+.++..+...+.++..+++.....+...++++||+|+.|+.+.+++.+..++..+.
T Consensus 161 ~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~ 240 (582)
T 3b5x_A 161 FWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQ 240 (582)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 66899999988888887777777788888888888888888888888888889999999999999987777777666654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 324 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1099)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~ 402 (1099)
..+..+...+...+..+ +.....++++++ ++.. ..+..++|. +++++ .++..++.|+..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~----g~~~v~~g~lt~g~--l~~~~----~~~~~~~~pl~~l~~~~~~ 307 (582)
T 3b5x_A 241 TMKLVSAQSIADPVIQM---IASLALFAVLFL----ASVDSIRAELTPGT--FTVVF----SAMFGLMRPLKALTSVTSE 307 (582)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHcCCCCHHH--HHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 44333222222222221 112222222222 2222 123445553 33333 2345566788888889999
Q ss_pred HHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCC
Q 001329 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNG 481 (1099)
Q Consensus 403 l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sG 481 (1099)
+++...+++|+.++++.+++... . .. ......+.|+++||+|.|+++ +++|+|+||++++||+++|+||||
T Consensus 308 ~~~~~~a~~ri~~~l~~~~~~~~-~-~~------~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sG 379 (582)
T 3b5x_A 308 FQRGMAACQTLFGLMDLETERDN-G-KY------EAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSG 379 (582)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCC-C-CC------CCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCC
Confidence 99999999999999986554221 0 00 001123579999999999753 689999999999999999999999
Q ss_pred CchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHH
Q 001329 482 SGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555 (1099)
Q Consensus 482 sGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l 555 (1099)
||||||+|+|+|+++|++|+|.+||.+ .++|++++||||+|.+|++|++|||.++... ..+++++.+++
T Consensus 380 sGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-----~~~~~~~~~~~ 454 (582)
T 3b5x_A 380 SGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEG-----EYTREQIEQAA 454 (582)
T ss_pred CCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCC-----CCCHHHHHHHH
Confidence 999999999999999999999999975 3467899999999999999999999987521 14678899999
Q ss_pred HhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEE
Q 001329 556 KNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCIT 630 (1099)
Q Consensus 556 ~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ 630 (1099)
+.++++++++++|++.++ +.|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .|+|+|+
T Consensus 455 ~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 534 (582)
T 3b5x_A 455 RQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLV 534 (582)
T ss_pred HHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999976554 35789999999999999999999999999999999999999999998875 3899999
Q ss_pred EccChhHHHhcCEEEEEeCC
Q 001329 631 ISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 631 ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||||++.++.||+|++|+++
T Consensus 535 itH~~~~~~~~d~i~~l~~G 554 (582)
T 3b5x_A 535 IAHRLSTIEQADEILVVDEG 554 (582)
T ss_pred EecCHHHHHhCCEEEEEECC
Confidence 99999999999999999864
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-63 Score=609.09 Aligned_cols=527 Identities=18% Similarity=0.211 Sum_probs=391.9
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 89 QVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHSTSKYI 167 (1099)
Q Consensus 89 ~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~yl 167 (1099)
++++++++||++. ++..+++.++.+++....|.+.+.++|...... ...++.. .++++++.++..+..++
T Consensus 12 ~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 82 (587)
T 3qf4_A 12 KTLARYLKPYWIF-----AVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKT----GILMLIVALIGAVGGIG 82 (587)
T ss_dssp CCGGGGTGGGHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3455688888774 555566666777788888999999998765432 2222221 11111122223333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001329 168 TGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1099)
Q Consensus 168 ~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~~~~ 246 (1099)
..++..+....+..++|.++|+++..+|..+|++. .++..+|+++|++.+.+.+...+..++..++.. +.+..+++++
T Consensus 83 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~-i~~~~~l~~~ 161 (587)
T 3qf4_A 83 CTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLF-VGGIVMAVSI 161 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 44444455555788899999999999999999764 668999999999998877766655555444332 2233455678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 001329 247 SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1099)
Q Consensus 247 ~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~ 326 (1099)
+|.+++++++.+|+..++..++.++..+..++.++..++......+...++++||+|+.|+.+.+++.+..++..+...+
T Consensus 162 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 241 (587)
T 3qf4_A 162 NVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIIS 241 (587)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888888888888888888889999999999999987776666655544332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 405 (1099)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~l~~ 405 (1099)
.. .+.+...++.........+.++++ ++.. ..+..+.| .+++++.+ +..++.++..+...+..+.+
T Consensus 242 ~~---~~~~~~~~~~~~~~~~~~~~vl~~----g~~~v~~g~lt~g--~~~~~~~~----~~~~~~~l~~l~~~~~~~~~ 308 (587)
T 3qf4_A 242 AF---SLIVFALPLFIFIVNMGMIAVLWF----GGVLVRNNQMEIG--SIMAYTNY----LMQIMFSLMMIGNILNFIVR 308 (587)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTSSCHH--HHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCcCHH--HHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 22 222222222221222222222222 2222 12334555 33443332 33445677778888888999
Q ss_pred HHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCCCch
Q 001329 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGK 484 (1099)
Q Consensus 406 ~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sGsGK 484 (1099)
+..+++|+.++++.+++...+... ....+..+.|+++||+|.|++ ++++|+|+||++++||+++|+|||||||
T Consensus 309 ~~~s~~ri~~~l~~~~~~~~~~~~------~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGK 382 (587)
T 3qf4_A 309 ASASAKRVLEVLNEKPAIEEADNA------LALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGK 382 (587)
T ss_dssp HHHHHHHHHHHHHCCCSCCCCTTC------BCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSH
T ss_pred HHHHHHHHHHHHcCCCccCCCCCc------cccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCH
Confidence 999999999999876543321110 001122467999999999975 4689999999999999999999999999
Q ss_pred hHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhc
Q 001329 485 SSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558 (1099)
Q Consensus 485 STLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~ 558 (1099)
|||+++|+|+++|++|+|.+||.+ .++|++|+||||+|++|++|++|||.++.+. .+++++.++++.+
T Consensus 383 STll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~------~~~~~~~~~~~~~ 456 (587)
T 3qf4_A 383 STLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRED------ATDDEIVEAAKIA 456 (587)
T ss_dssp HHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSS------CCHHHHHHHHHHT
T ss_pred HHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCC------CCHHHHHHHHHHh
Confidence 999999999999999999999986 3467899999999999999999999987542 4678899999999
Q ss_pred CChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEcc
Q 001329 559 DLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISH 633 (1099)
Q Consensus 559 ~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH 633 (1099)
+++++++++|.+.++ +.|.+||||||||++|||||+++|+++|||||||+||+++++.+++.+++ .|+|+|+|||
T Consensus 457 ~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 536 (587)
T 3qf4_A 457 QIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQ 536 (587)
T ss_dssp TCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 999999999976554 35789999999999999999999999999999999999999999998875 4899999999
Q ss_pred ChhHHHhcCEEEEEeCC
Q 001329 634 RPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 634 ~l~~i~~~D~Il~l~~~ 650 (1099)
|++++..||+|++|+++
T Consensus 537 ~l~~~~~~d~i~vl~~G 553 (587)
T 3qf4_A 537 KIPTALLADKILVLHEG 553 (587)
T ss_dssp CHHHHTTSSEEEEEETT
T ss_pred ChHHHHhCCEEEEEECC
Confidence 99999999999999864
No 5
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8.7e-64 Score=609.95 Aligned_cols=533 Identities=15% Similarity=0.189 Sum_probs=395.8
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh----hHHHHHHHHHHHHHHHHHHHHHH
Q 001329 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRV----PLFFQLISENILLCFLLSTMHST 163 (1099)
Q Consensus 88 l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~----~~~~~~l~~~~~l~~~~~~~~~~ 163 (1099)
+++++++++||++. ++..+++.++.+.+....|.+.++++|.+..... ..+........+++++..++..+
T Consensus 2 ~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (578)
T 4a82_A 2 IKRYLQFVKPYKYR-----IFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPP 76 (578)
T ss_dssp HHHHHHHHGGGHHH-----HHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999874 5556666666677788889999999998765332 11111111112222222233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1099)
Q Consensus 164 ~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L 242 (1099)
..|+..++..+...++..++|.++|+++.++|.++|++. .++..+|+++|++.+.+.+...+...+..++..++ ...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~-~~~~ 155 (578)
T 4a82_A 77 IEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIII-ALSI 155 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 555555555555566888899999999999999999864 56899999999998776655433333333332222 2334
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 001329 243 CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1099)
Q Consensus 243 ~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~ 322 (1099)
+++++|.+++++++.+|+..++..++.++..+...+.++..++......+...++++||+|+.|+.+.+++++..++..+
T Consensus 156 l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 235 (578)
T 4a82_A 156 MFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLT 235 (578)
T ss_dssp HHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 56689999999888888888888888888888888888888888888888888999999999999998777776666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1099)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~ 402 (1099)
...+.. .+.+....+...+.....+++++++.+. ...+..+.|. +++++ .++..++.++..+...+..
T Consensus 236 ~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~g~~~---v~~g~lt~g~--l~~~~----~~~~~~~~~l~~l~~~~~~ 303 (578)
T 4a82_A 236 RALKHT---RWNAYSFAAINTVTDIGPIIVIGVGAYL---AISGSITVGT--LAAFV----GYLELLFGPLRRLVASFTT 303 (578)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTSCCHHH--HHHHH----HTHHHHTTHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCcCHHH--HHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 433322 2222222222211122222222221111 0123345553 33332 2334556788888888899
Q ss_pred HHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCC
Q 001329 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNG 481 (1099)
Q Consensus 403 l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sG 481 (1099)
+++...+++|+.++++.+++....... .......+.|+++||+|.|++ ++++|+|+||++++||+++|+||||
T Consensus 304 ~~~~~~s~~ri~~~l~~~~~~~~~~~~------~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sG 377 (578)
T 4a82_A 304 LTQSFASMDRVFQLIDEDYDIKNGVGA------QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSG 377 (578)
T ss_dssp HHHHHHHHHHHHHHHTCCCSSCCCTTC------CCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTT
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCc------cccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCC
Confidence 999999999999999876543321110 011112467999999999976 4689999999999999999999999
Q ss_pred CchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHH
Q 001329 482 SGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555 (1099)
Q Consensus 482 sGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l 555 (1099)
||||||+++|+|+++|++|+|.++|.+ .++|++++||||+|++|++|++|||.++.+. .+++++.+++
T Consensus 378 sGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~------~~~~~~~~~~ 451 (578)
T 4a82_A 378 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPT------ATDEEVVEAA 451 (578)
T ss_dssp SSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSS------CCHHHHHHHH
T ss_pred ChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCC------CCHHHHHHHH
Confidence 999999999999999999999999975 3467899999999999999999999997542 4678899999
Q ss_pred HhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEE
Q 001329 556 KNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCIT 630 (1099)
Q Consensus 556 ~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ 630 (1099)
+.++++++++++|.+.++ +.|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .++|+|+
T Consensus 452 ~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~ 531 (578)
T 4a82_A 452 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLI 531 (578)
T ss_dssp HHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEE
T ss_pred HHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999976554 35779999999999999999999999999999999999999999998865 4899999
Q ss_pred EccChhHHHhcCEEEEEeCC
Q 001329 631 ISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 631 ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||||++.++.||+|++|+++
T Consensus 532 itH~l~~~~~~d~i~~l~~G 551 (578)
T 4a82_A 532 VAHRLSTITHADKIVVIENG 551 (578)
T ss_dssp ECSSGGGTTTCSEEEEEETT
T ss_pred EecCHHHHHcCCEEEEEECC
Confidence 99999999999999999864
No 6
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.9e-64 Score=616.25 Aligned_cols=530 Identities=20% Similarity=0.239 Sum_probs=398.4
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHH
Q 001329 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHST 163 (1099)
Q Consensus 85 ~~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~ 163 (1099)
+..+++++++++|+++. ++..+++.++.+++....|.+.+.++|.+.... ...+...+ ++++++.++..+
T Consensus 22 ~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 92 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFT-----LIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYM----LILGTIYALTSL 92 (598)
T ss_dssp HHHHHHHGGGTGGGHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHH----HHHHHHHHHHHH
Confidence 56688899999998763 555666677777888889999999998875432 22222221 122222223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1099)
Q Consensus 164 ~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L 242 (1099)
..|+..++..+....+..++|.++|+++.++|++||++. .++..+|+++|++.+.+.+...+...+..++..+. ...+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~-~~~~ 171 (598)
T 3qf4_B 93 LFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAG-AVIM 171 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 455555555555566888899999999999999999764 56899999999999887776666555555543332 3345
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 001329 243 CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1099)
Q Consensus 243 ~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~ 322 (1099)
+++++|.+++++++.+|+..++..+++++..+...+.++..++......+...++++||+|+.|+.+.+++++..++..+
T Consensus 172 l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~ 251 (598)
T 3qf4_B 172 MFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRK 251 (598)
T ss_dssp HHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 56789999999888888888888888888888888888888888888888888999999999999998777766665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSR 401 (1099)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~ 401 (1099)
...+.. ...+....+.........+++++++ +.+ ..+..+.|. +++++. +...+..++..+...+.
T Consensus 252 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g----~~l~~~g~ls~g~--~~~~~~----~~~~~~~~l~~l~~~~~ 318 (598)
T 3qf4_B 252 VGTKAQ---IFSGVLPPLMNMVNNLGFALISGFG----GWLALKDIITVGT--IATFIG----YSRQFTRPLNELSNQFN 318 (598)
T ss_dssp HHHHHH---HHTTTHHHHHHHHHHHHHHHHHHHH----HHHGGGTSSCHHH--HHHHHT----TTTSSHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHH
Confidence 333222 2222222222111122222222222 221 123345553 333322 23345577778888889
Q ss_pred HHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCC
Q 001329 402 RLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNG 481 (1099)
Q Consensus 402 ~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sG 481 (1099)
.+++...+++|+.++++.+++...+.. .......+.|+++||+|.|++++++|+|+||++++||+++|+||||
T Consensus 319 ~~~~~~~s~~ri~~~l~~~~~~~~~~~-------~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sG 391 (598)
T 3qf4_B 319 MIQMALASAERIFEILDLEEEKDDPDA-------VELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTG 391 (598)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCSSC-------CCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCC-------CCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCC
Confidence 999999999999999987654321110 0111224579999999999877789999999999999999999999
Q ss_pred CchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHH
Q 001329 482 SGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555 (1099)
Q Consensus 482 sGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l 555 (1099)
||||||+|+|+|+++|++|+|.++|.+ .++|++++||||+|++|++|++|||.++.+. .+++++.+++
T Consensus 392 sGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~------~~~~~~~~~~ 465 (598)
T 3qf4_B 392 SGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPG------ATDEEIKEAA 465 (598)
T ss_dssp SSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTT------CCTTHHHHHT
T ss_pred CcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCC------CCHHHHHHHH
Confidence 999999999999999999999999975 3467899999999999999999999997542 3456788999
Q ss_pred HhcCChhHHhcCCCCcccC---CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEE
Q 001329 556 KNVDLEYLLDRYPPEKEIN---WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCIT 630 (1099)
Q Consensus 556 ~~~~l~~~~~~~p~~~~~~---~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ 630 (1099)
+.++++++++++|.+.++. .|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .|+|+|+
T Consensus 466 ~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~ 545 (598)
T 3qf4_B 466 KLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSII 545 (598)
T ss_dssp TTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999766553 4689999999999999999999999999999999999999999988875 4999999
Q ss_pred EccChhHHHhcCEEEEEeCC
Q 001329 631 ISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 631 ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||||+++++.||+|++|+++
T Consensus 546 itH~l~~~~~~d~i~~l~~G 565 (598)
T 3qf4_B 546 IAHRLNTIKNADLIIVLRDG 565 (598)
T ss_dssp ESCCTTHHHHCSEEEEECSS
T ss_pred EecCHHHHHcCCEEEEEECC
Confidence 99999999999999999864
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=7.6e-63 Score=602.29 Aligned_cols=531 Identities=17% Similarity=0.200 Sum_probs=397.5
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS 164 (1099)
Q Consensus 85 ~~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 164 (1099)
++.+++++++++++++. ++..+++.++..++....|.+.++++|.+........ +....++++++.++..+.
T Consensus 10 ~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 81 (582)
T 3b60_A 10 WQTFRRLWPTIAPFKAG-----LIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV---LLWMPLVVIGLMILRGIT 81 (582)
T ss_dssp CHHHHHHHHHHGGGHHH-----HHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHH---HHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHH---HHHHHHHHHHHHHHHHHH
Confidence 56688888999988763 4445555666667777888888888886543221111 111111112222334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1099)
Q Consensus 165 ~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~ 243 (1099)
.|+..++..+....+..++|.++|+++.+.|.++|++. .++..+|+++|++.+...+...+...+..++..++ ...++
T Consensus 82 ~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~-~~~~l 160 (582)
T 3b60_A 82 SYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIG-LFIMM 160 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 55555555555566888899999999999999999764 56889999999999887766666666655544333 23345
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 001329 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1099)
Q Consensus 244 ~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~ 323 (1099)
++++|.+++++++.+|+..++...+.++..+...+.++..+++.....+...++++||+|+.|+.+.+++.+..++..+.
T Consensus 161 ~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~ 240 (582)
T 3b60_A 161 FYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQ 240 (582)
T ss_dssp HHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 66899999998888887777777788888888888888888888888888889999999999999987777777666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 324 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1099)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~ 402 (1099)
..+..+...+...+..++ .....+++++ +++... .+..++| .+++++. +...++.++..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~g~~~v~~g~lt~g--~l~~~~~----~~~~~~~pl~~l~~~~~~ 307 (582)
T 3b60_A 241 GMKMVSASSISDPIIQLI---ASLALAFVLY----AASFPSVMDSLTAG--TITVVFS----SMIALMRPLKSLTNVNAQ 307 (582)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHH----HHHSSSTTSSSHHH--HHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHcCCCCHH--HHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 444333222222222221 1122222222 223332 2344555 3344332 345566788888889999
Q ss_pred HHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEEcCCC
Q 001329 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNG 481 (1099)
Q Consensus 403 l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~-~~vL~~vsl~i~~Ge~vaIvG~sG 481 (1099)
+++...+++|+.++++.+++... . .. ......+.|+++||+|.|+++ +++|+|+||++++||+++|+||||
T Consensus 308 ~~~~~~a~~ri~~~l~~~~~~~~-~-~~------~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sG 379 (582)
T 3b60_A 308 FQRGMAACQTLFAILDSEQEKDE-G-KR------VIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSG 379 (582)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCCC-C-CB------CCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHcCCCCccC-C-CC------CCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCC
Confidence 99999999999999986554321 0 00 001123579999999999754 789999999999999999999999
Q ss_pred CchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHH
Q 001329 482 SGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555 (1099)
Q Consensus 482 sGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l 555 (1099)
||||||+|+|+|+++|++|+|.++|.+ .++|++++||||+|.+|++|++|||.++... ..+++++.+++
T Consensus 380 sGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-----~~~~~~~~~~l 454 (582)
T 3b60_A 380 SGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTE-----EYSREQIEEAA 454 (582)
T ss_dssp SSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTS-----CCCHHHHHHHH
T ss_pred CCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCC-----CCCHHHHHHHH
Confidence 999999999999999999999999965 2457789999999999999999999987521 14678899999
Q ss_pred HhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEE
Q 001329 556 KNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCIT 630 (1099)
Q Consensus 556 ~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ 630 (1099)
+.++++++++++|++.++ +.|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .|+|+|+
T Consensus 455 ~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 534 (582)
T 3b60_A 455 RMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 534 (582)
T ss_dssp HTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999976554 35789999999999999999999999999999999999999999988875 3899999
Q ss_pred EccChhHHHhcCEEEEEeCC
Q 001329 631 ISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 631 ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||||++.++.||+|++|+++
T Consensus 535 itH~~~~~~~~d~i~~l~~G 554 (582)
T 3b60_A 535 IAHRLSTIEQADEIVVVEDG 554 (582)
T ss_dssp ECSCGGGTTTCSEEEEEETT
T ss_pred EeccHHHHHhCCEEEEEECC
Confidence 99999999999999999874
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=9.4e-63 Score=602.96 Aligned_cols=538 Identities=20% Similarity=0.217 Sum_probs=394.1
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS 164 (1099)
Q Consensus 85 ~~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 164 (1099)
++.+++++++++|+++. ++..+++.++...+....|.+.+.++|.+...........+....++++++.++..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (595)
T 2yl4_A 4 LPEARKLLGLAYPERRR-----LAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAA 78 (595)
T ss_dssp HHHHHHHHHHHGGGHHH-----HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45577888899988774 4444555566666777888899999988764321100000111111112222223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1099)
Q Consensus 165 ~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~~-~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L~ 243 (1099)
.++..++..+....+..++|.++|+++.+.|.++|++. .++..+|+++|++.+...+...+...+..++..++ ...++
T Consensus 79 ~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~-~~~~l 157 (595)
T 2yl4_A 79 NAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASV-GISMM 157 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45555555555556888899999999999999999764 56899999999999877666555555555443332 23445
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 001329 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1099)
Q Consensus 244 ~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~ 323 (1099)
++++|.+++++++.+|+..++...+.++..+..++.++..++......+...++++||+|+.|+.+.+++.+..++..+.
T Consensus 158 ~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 237 (595)
T 2yl4_A 158 FFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQL 237 (595)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 66899999988888887777777788888888888888888888888888889999999999999987777777666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 324 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1099)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~~ 402 (1099)
..+..+ ..+....+...+.....+.++++ ++.+ ..+..++|. +++++. +...++.++..+...+..
T Consensus 238 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----g~~~v~~g~lt~g~--l~~~~~----~~~~~~~pl~~l~~~~~~ 304 (595)
T 2yl4_A 238 ARKEAF---ARAGFFGATGLSGNLIVLSVLYK----GGLLMGSAHMTVGE--LSSFLM----YAFWVGISIGGLSSFYSE 304 (595)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTSCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 433322 22222222211111122222222 2221 123446653 333332 334556788888888999
Q ss_pred HHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCc-EEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEEcC
Q 001329 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANY-IEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGP 479 (1099)
Q Consensus 403 l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~-I~~~~v~~~y~~~--~~vL~~vsl~i~~Ge~vaIvG~ 479 (1099)
+++...+++|+.++++.+++...+... . ......+. |+++||+|.|+++ +++|+|+||++++||+++|+||
T Consensus 305 ~~~~~~s~~ri~~~l~~~~~~~~~~~~-~-----~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~ 378 (595)
T 2yl4_A 305 LMKGLGAGGRLWELLEREPKLPFNEGV-I-----LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGP 378 (595)
T ss_dssp HHHHHHHHHHHHHHHTCCCSSCSSCSB-C-----CCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHcCCCccCCCCCC-C-----CCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECC
Confidence 999999999999999865543211100 0 00112356 9999999999753 5799999999999999999999
Q ss_pred CCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHH
Q 001329 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE 553 (1099)
Q Consensus 480 sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~ 553 (1099)
||||||||+|+|+|+++|++|+|.++|.+ .++|++|+||||+|.+|++|++|||.++.+.. ...+++++.+
T Consensus 379 sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~ 455 (595)
T 2yl4_A 379 SGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP---SSVTAEEIQR 455 (595)
T ss_dssp TTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSST---TTSCHHHHHH
T ss_pred CCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCc---cccCHHHHHH
Confidence 99999999999999999999999999965 24577899999999999999999999975421 1246788999
Q ss_pred HHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEE
Q 001329 554 LLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSC 628 (1099)
Q Consensus 554 ~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~Tv 628 (1099)
+++.++++++++++|++.++ +.|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .|+|+
T Consensus 456 ~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tv 535 (595)
T 2yl4_A 456 VAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTV 535 (595)
T ss_dssp HHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEE
Confidence 99999999999999975544 35789999999999999999999999999999999999999999998875 38999
Q ss_pred EEEccChhHHHhcCEEEEEeCC
Q 001329 629 ITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 629 I~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|+||||+++++.||+|++|+++
T Consensus 536 i~itH~~~~~~~~d~i~~l~~G 557 (595)
T 2yl4_A 536 LVIAHRLSTIKNANMVAVLDQG 557 (595)
T ss_dssp EEECCCHHHHHHSSEEEEEETT
T ss_pred EEEecCHHHHHcCCEEEEEECC
Confidence 9999999999999999999864
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.4e-63 Score=656.06 Aligned_cols=534 Identities=17% Similarity=0.174 Sum_probs=371.2
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh---HHHHHHHHHHHHHHHHHHHHH
Q 001329 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVP---LFFQLISENILLCFLLSTMHS 162 (1099)
Q Consensus 86 ~~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~---~~~~~l~~~~~l~~~~~~~~~ 162 (1099)
..+.+++.+.+|++.. +++.+++.++...+....+.+...+++........ ......+.++++.++..++.+
T Consensus 738 ~~~~~~~~~~~~~~~~-----l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~ 812 (1321)
T 4f4c_A 738 TNLFEILYHARPHALS-----LFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSF 812 (1321)
T ss_dssp CCHHHHHHHTGGGHHH-----HHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3477788888888764 23333333333334444455555555543322111 111111111222222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC---CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG---RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYT 239 (1099)
Q Consensus 163 ~~~yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~---~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~ 239 (1099)
+..|+....+. ++.+++|.+.|+++++.|++|||. .+++..+|+++|++.+...+...+..++..++..+ ..
T Consensus 813 ~~~~~~~~~~~----~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i-~~ 887 (1321)
T 4f4c_A 813 LMTFFMGIASE----SLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMV-AG 887 (1321)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHH-HH
Confidence 44444444444 477889999999999999999985 24688999999999887665555555554444332 23
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 001329 240 WRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKA 319 (1099)
Q Consensus 240 ~~L~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~ 319 (1099)
..++++.+|.+++++++.+|+..+......++..+...+.++..++......+...++++||+|+.|+.+.+++.+..++
T Consensus 888 ~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~ 967 (1321)
T 4f4c_A 888 IGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDI 967 (1321)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred eeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHH
Confidence 34566789999999888888777766665555444444444445555555667778999999999999998776666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 320 LTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSI 398 (1099)
Q Consensus 320 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~ 398 (1099)
..+...+. ....++...+...+.....+.+++ +++.+ ..+..+++.+..+..+. .+.....+++.+..
T Consensus 968 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~g~~lv~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 1036 (1321)
T 4f4c_A 968 PHKEAIKE---AFIQGLSYGCASSVLYLLNTCAYR----MGLALIITDPPTMQPMRVLRVMY----AITISTSTLGFATS 1036 (1321)
T ss_dssp HHHHHHHH---HHHHHHHHHHHTTHHHHHHHHHHH----HHHHTTSSSSCSSCHHHHHHHHH----HHHTTTSSTTGGGG
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHhcCccccchHHHHHHHH----HHHHHHHHHHHHHH
Confidence 54433222 222222222211111111122222 11122 22333444333322211 11112234555566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEE
Q 001329 399 SSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLI 476 (1099)
Q Consensus 399 ~~~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~--~~vL~~vsl~i~~Ge~vaI 476 (1099)
.+..+.+...+++|++++++.+++.+..... ...++..+.|+|+||+|+||++ .++|+|+||+|++||++||
T Consensus 1037 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~------~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaI 1110 (1321)
T 4f4c_A 1037 YFPEYAKATFAGGIIFGMLRKISKIDSLSLA------GEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLAL 1110 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSSCTTCCC------SBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCcccCCCccCC------CCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEE
Confidence 6778888999999999999877654321111 1112345789999999999853 4799999999999999999
Q ss_pred EcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHH
Q 001329 477 TGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGG 550 (1099)
Q Consensus 477 vG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~ 550 (1099)
|||||||||||+++|.|+|+|++|+|.+||+| +++|++|++|||||++|++||+|||.|+... .+.++++
T Consensus 1111 VG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~----~~~sd~e 1186 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP----SSVTMAQ 1186 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT----TTSCHHH
T ss_pred ECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCC----CCCCHHH
Confidence 99999999999999999999999999999986 4689999999999999999999999998643 2368999
Q ss_pred HHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cC
Q 001329 551 MVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MG 625 (1099)
Q Consensus 551 i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g 625 (1099)
++++++.++++++++++|.++++ +.|.+||||||||+||||||+++|+|||||||||+||+++|+.+++.+++ .|
T Consensus 1187 i~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~ 1266 (1321)
T 4f4c_A 1187 VEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREG 1266 (1321)
T ss_dssp HHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSS
T ss_pred HHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999987665 36889999999999999999999999999999999999999999999987 49
Q ss_pred cEEEEEccChhHHHhcCEEEEEeCC
Q 001329 626 TSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 626 ~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+|+|+||||++++..||+|+||++|
T Consensus 1267 ~TvI~IAHRLsTi~~aD~I~Vld~G 1291 (1321)
T 4f4c_A 1267 RTCIVIAHRLNTVMNADCIAVVSNG 1291 (1321)
T ss_dssp SEEEEECSSSSTTTTCSEEEEESSS
T ss_pred CEEEEeccCHHHHHhCCEEEEEECC
Confidence 9999999999999999999999864
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.9e-56 Score=583.24 Aligned_cols=536 Identities=18% Similarity=0.200 Sum_probs=378.2
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVP-LFFQLISENILLCFLLSTMHSTSK 165 (1099)
Q Consensus 87 ~l~~Ll~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~~~a~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1099)
.+++++++.+|+++. ++..+++.++...+....+.+.+.+++.......+ ........+.++++++.++..+..
T Consensus 692 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 766 (1284)
T 3g5u_A 692 SFWRILKLNSTEWPY-----FVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITF 766 (1284)
T ss_dssp CTTHHHHHHHHTCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888775 33334444444455556677777777665543321 111111111222222222233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC---CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG---RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1099)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~l~~~~~~~~~~---~~~n~~~Rit~Di~~~~~~i~~l~~~~l~~il~~i~~~~~L 242 (1099)
++..++..+...++..++|.++|+++.+.|++||+. ..++..+|+++|++.+...+...+...+..++.. +....+
T Consensus 767 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~-~~~~i~ 845 (1284)
T 3g5u_A 767 FLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANL-GTGIII 845 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 444444445555588899999999999999999984 3568889999999998777666665555554433 223445
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 001329 243 CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1099)
Q Consensus 243 ~~~~~~~l~l~il~~~~~~~~i~~~~~~~~~~~~~~~q~~~a~~r~~~~~~~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~ 322 (1099)
+++++|.+++++++.+|+..++.....+...+...+.++..+.......+..+++++|++|+.|+.+.+++.+..+...+
T Consensus 846 ~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~ 925 (1284)
T 3g5u_A 846 SLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYR 925 (1284)
T ss_dssp HHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 66789999999988888877766666666666655555555555566677777889999999999987666655544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001329 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSR 401 (1099)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~i~~~~~~l~~l~~~~~ 401 (1099)
.. .+...+.+...++.........+++++ +++.+. .+..+.|.. +..+ ..+.....+++.+.....
T Consensus 926 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~lv~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~ 992 (1284)
T 3g5u_A 926 NA---MKKAHVFGITFSFTQAMMYFSYAAAFR----FGAYLVTQQLMTFENV--LLVF----SAIVFGAMAVGQVSSFAP 992 (1284)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCSSSCSCSTTH--HHHH----HHHHHHHHHHHHHTSSSC
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCccHHHH--HHHH----HHHHHHHHHHHHHHHHHH
Confidence 22 222333333333332222222223332 333332 233444432 2211 112223345555555566
Q ss_pred HHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEEcC
Q 001329 402 RLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGP 479 (1099)
Q Consensus 402 ~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~--~~vL~~vsl~i~~Ge~vaIvG~ 479 (1099)
.+.+...+++|+.++++.+++........ .......+.|+++||+|.|+++ .++|+|+||+|++||++||+||
T Consensus 993 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~-----~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~ 1067 (1284)
T 3g5u_A 993 DYAKATVSASHIIRIIEKTPEIDSYSTQG-----LKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGS 1067 (1284)
T ss_dssp CSTHHHHHHHHHHHHHHSCCSSSSCCSSC-----CCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHcCCCccccccccc-----ccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECC
Confidence 67788899999999998765543211100 0111224679999999999753 4799999999999999999999
Q ss_pred CCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHH
Q 001329 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE 553 (1099)
Q Consensus 480 sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~ 553 (1099)
||||||||+++|+|+++|++|+|.+||.+ .++|++|+||||||.+|++||+|||.++.... ..+++++.+
T Consensus 1068 sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~----~~~~~~i~~ 1143 (1284)
T 3g5u_A 1068 SGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSR----VVSYEEIVR 1143 (1284)
T ss_dssp SSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSC----CCCHHHHHH
T ss_pred CCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCC----CCCHHHHHH
Confidence 99999999999999999999999999986 35688999999999999999999999976432 246788999
Q ss_pred HHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEE
Q 001329 554 LLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSC 628 (1099)
Q Consensus 554 ~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~Tv 628 (1099)
+++.++++++++++|.++++ +.|.+|||||||||+|||||+++|++||||||||+||+.+++.+++.+++ .|+|+
T Consensus 1144 ~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tv 1223 (1284)
T 3g5u_A 1144 AAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTC 1223 (1284)
T ss_dssp HHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCE
T ss_pred HHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEE
Confidence 99999999999999986655 35789999999999999999999999999999999999999999998875 48999
Q ss_pred EEEccChhHHHhcCEEEEEeCC
Q 001329 629 ITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 629 I~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|+||||++++..||+|++|+++
T Consensus 1224 i~isH~l~~i~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1224 IVIAHRLSTIQNADLIVVIQNG 1245 (1284)
T ss_dssp EEECSCTTGGGSCSEEEEEETB
T ss_pred EEEecCHHHHHcCCEEEEEECC
Confidence 9999999999999999999864
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=7.3e-49 Score=440.86 Aligned_cols=238 Identities=24% Similarity=0.345 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCC
Q 001329 401 RRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPN 480 (1099)
Q Consensus 401 ~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~s 480 (1099)
..++++..+++|++++++.+++........ ......+.|+++||+|.|++++++|+||||+|++||+++|+|||
T Consensus 16 ~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~------~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~s 89 (306)
T 3nh6_A 16 PRGSHMFIDMENMFDLLKEETEVKDLPGAG------PLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPS 89 (306)
T ss_dssp ---CCTTCCHHHHHHHHHHHHSCCCCTTCB------CCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSS
T ss_pred hhHHHHHHHHHHHHHHHhCCcccccccccc------ccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCC
Confidence 345666788899999998766543211110 01112457999999999987788999999999999999999999
Q ss_pred CCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHH
Q 001329 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1099)
Q Consensus 481 GsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~ 554 (1099)
|||||||+++|+|+++|++|+|.++|.+ .++|++|+||||+|.+|++||+|||.++... ..++++.++
T Consensus 90 GsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~------~~~~~~~~~ 163 (306)
T 3nh6_A 90 GAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT------AGNDEVEAA 163 (306)
T ss_dssp CHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTT------CCHHHHHHH
T ss_pred CchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhccc------CCHHHHHHH
Confidence 9999999999999999999999999975 3467899999999999999999999998543 357789999
Q ss_pred HHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEE
Q 001329 555 LKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1099)
Q Consensus 555 l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI 629 (1099)
++.+++.++++++|.+..+ ..|.+|||||||||+|||||+++|++||||||||+||+.++..+++.+++ .++|+|
T Consensus 164 ~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi 243 (306)
T 3nh6_A 164 AQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTI 243 (306)
T ss_dssp HHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999976554 35779999999999999999999999999999999999999999998876 489999
Q ss_pred EEccChhHHHhcCEEEEEeCC
Q 001329 630 TISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 630 ~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+||||++++..||+|++|+++
T Consensus 244 ~itH~l~~~~~aD~i~vl~~G 264 (306)
T 3nh6_A 244 VVAHRLSTVVNADQILVIKDG 264 (306)
T ss_dssp EECCSHHHHHTCSEEEEEETT
T ss_pred EEEcChHHHHcCCEEEEEECC
Confidence 999999999999999999874
No 12
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.3e-46 Score=426.64 Aligned_cols=230 Identities=24% Similarity=0.316 Sum_probs=194.2
Q ss_pred CCcEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------c---
Q 001329 442 ANYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------S--- 509 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~--- 509 (1099)
...|+++||++.|+++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 4579999999999643 469999999999999999999999999999999999999999999999975 1
Q ss_pred cccccEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001329 510 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1099)
Q Consensus 510 ~~r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1099)
.+|++||||||++.++. .||+||+.++............+++.++++.+||.++.+++|. +|||||||||+
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~--------~LSGGqkQRVa 173 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS--------NLSGGQKQRVA 173 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTT--------TSCHHHHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChh--------hCCHHHHHHHH
Confidence 24678999999998775 5999999987543222122334678899999999999999885 89999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCceEEeecCCCcc
Q 001329 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKRDGSS 663 (1099)
Q Consensus 589 IARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~~~~~~~~ 663 (1099)
|||||+.+|++|||||||||||+.++..+++++++ .|+|+|+||||++.+. .||+|++|+++
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G------------- 240 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNG------------- 240 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETT-------------
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC-------------
Confidence 99999999999999999999999999999887754 4999999999999886 69999999863
Q ss_pred ccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhcCCC
Q 001329 664 VVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPI 718 (1099)
Q Consensus 664 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~ 718 (1099)
++++.++.++++. .|.|||++.++.+.+.
T Consensus 241 -------------------------~iv~~g~~~ev~~-~p~~~~~~~~~~~~~~ 269 (366)
T 3tui_C 241 -------------------------ELIEQDTVSEVFS-HPKTPLAQKFIQSTLH 269 (366)
T ss_dssp -------------------------EEEECCBHHHHHS-SCCSHHHHHHHHHHTT
T ss_pred -------------------------EEEEEcCHHHHHh-CCCcHHHHHHHhhccc
Confidence 2233345556666 4899999999987654
No 13
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.8e-44 Score=394.53 Aligned_cols=202 Identities=22% Similarity=0.334 Sum_probs=179.2
Q ss_pred CcEEEEeeEEEcC-CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccE
Q 001329 443 NYIEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~-~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i 515 (1099)
..|+++||++.|+ +++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..++++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 4699999999995 35689999999999999999999999999999999999999999999999964 2346789
Q ss_pred EEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHH
Q 001329 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARL 592 (1099)
Q Consensus 516 ~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARA 592 (1099)
+||||+|.++..|++||+.++... ..++++.++++.+++.++++++|.+... ..+.+|||||||||+||||
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAra 159 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPG------MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARA 159 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTT------CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHH
T ss_pred EEEeCCCccccccHHHHHhccCCC------CCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHH
Confidence 999999999888999999986421 3467788999999999999998854333 2467899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 593 L~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|+++|+++|||||||+||+.++..+.+.+++ .|+|+|+|||+++.+..||++++|+++
T Consensus 160 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G 219 (247)
T 2ff7_A 160 LVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKG 219 (247)
T ss_dssp HTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETT
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999988765 389999999999998889999999864
No 14
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.1e-44 Score=397.09 Aligned_cols=200 Identities=22% Similarity=0.295 Sum_probs=173.9
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc--------ccccc
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKE 514 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~~r~~ 514 (1099)
..|+++||++.|+++.++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- .++++
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 4699999999997666799999999999999999999999999999999999999999999999641 34678
Q ss_pred EEEEecCC--CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001329 515 IFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1099)
Q Consensus 515 i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1099)
||||||+| .++..|++||+.++............+++.++++.+++.++.++.|. +|||||||||+||||
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTH--------CLSFGQKKRVAIAGV 157 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGG--------GSCHHHHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcc--------cCCHHHHHHHHHHHH
Confidence 99999998 46778999999986433221112234568889999999998888774 899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 593 L~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|+.+|++||||||||+||+.++..+++.+++ .|+|+|+||||++.+. .||+|++|+++
T Consensus 158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G 220 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEG 220 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETT
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999998887643 3899999999999885 69999999864
No 15
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.6e-44 Score=412.22 Aligned_cols=198 Identities=21% Similarity=0.342 Sum_probs=173.3
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEe
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~ 519 (1099)
.|+++||++.|. +.++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++.|||||
T Consensus 3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 489999999994 5689999999999999999999999999999999999999999999999965 22356799999
Q ss_pred cCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|++.+++ .||+|||.|+...........++++.++++.+++.++.+++|. +|||||||||+|||||+.+|+
T Consensus 82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~--------~LSGGqrQRVaiArAL~~~P~ 153 (381)
T 3rlf_A 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK--------ALSGGQRQRVAIGRTLVAEPS 153 (381)
T ss_dssp TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGG--------GSCHHHHHHHHHHHHHHHCCS
T ss_pred cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh--------HCCHHHHHHHHHHHHHHcCCC
Confidence 9998875 5999999997543322222335678899999999999999885 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+||||||||+||+..+.++.+.+++ .|+|+|+||||++.+. .||+|++|+++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G 210 (381)
T 3rlf_A 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210 (381)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999998876643 4999999999998774 69999999864
No 16
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5.5e-44 Score=387.90 Aligned_cols=199 Identities=23% Similarity=0.344 Sum_probs=168.9
Q ss_pred cEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c-----c---c
Q 001329 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D---L 511 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~---~ 511 (1099)
.|+++||++.|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . + .
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 37899999999643 369999999999999999999999999999999999999999999999964 1 1 1
Q ss_pred -cccEEEEecCCCCCcc-cHHHHhccCCCCC---CcCCcCCHHHHHHHHHhcCChhHH-hcCCCCcccCCCCCcChHHHH
Q 001329 512 -NKEIFYVPQRPYTAVG-TLRDQLIYPLTSD---QEVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELSLGEQQ 585 (1099)
Q Consensus 512 -r~~i~~v~Q~p~l~~~-Ti~eni~~~~~~~---~~~~~~~~~~i~~~l~~~~l~~~~-~~~p~~~~~~~g~~LSGGqrQ 585 (1099)
++.|+||||+|.++.. |++||+.++.... ........+++.++++.+++.+.. ++.|. +|||||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------~LSgGq~Q 152 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN--------QLSGGQQQ 152 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG--------GSCHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChh--------hCCHHHHH
Confidence 3469999999988765 9999998753211 111112345678899999998754 77664 89999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 586 RlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||+|||||+++|++||||||||+||+.++..+.+.+++ .|+|+|+||||++.+..||+|++|+++
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G 221 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDG 221 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETT
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999887754 399999999999988889999999874
No 17
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.2e-43 Score=405.16 Aligned_cols=198 Identities=25% Similarity=0.379 Sum_probs=173.8
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--------ccccccE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--------SDLNKEI 515 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--------~~~r~~i 515 (1099)
.|+++||++.|. +.++|+||||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...+++|
T Consensus 4 ~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 589999999994 5789999999999999999999999999999999999999999999999964 1235789
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
|||||++.+|. .|++||+.|+............+++.++++.++|.++.+++|. +|||||||||+|||||+
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~--------~LSGGq~QRValArAL~ 154 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH--------ELSGGQQQRAALARALA 154 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGG--------GSCHHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChh--------hCCHHHHHHHHHHHHHH
Confidence 99999998875 6999999998654332222345678899999999999999885 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
.+|++||||||||+||+..+.++.+.+ ++.|+|+|+||||++.+. .||+|++|+++
T Consensus 155 ~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G 215 (359)
T 3fvq_A 155 PDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQG 215 (359)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETT
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECC
Confidence 999999999999999999999887643 346999999999999875 69999999864
No 18
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1e-43 Score=387.64 Aligned_cols=201 Identities=23% Similarity=0.430 Sum_probs=177.9
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v 518 (1099)
|+++||++.|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..++++|+||
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 7899999999655789999999999999999999999999999999999999999999999964 2457789999
Q ss_pred ecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHcc
Q 001329 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 519 ~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
||+|.++..|++||+.++... ...++++.++++.+++.++++++|.+... ..+.+||||||||++|||||++
T Consensus 82 ~q~~~l~~~tv~enl~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 82 SQDSAIMAGTIRENLTYGLEG-----DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp CCSSCCCCEEHHHHTTSCTTS-----CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred cCCCccccccHHHHHhhhccC-----CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 999999889999999987321 13467788999999999999988864433 2356899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+|+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+..||+|++|+++
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G 213 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKG 213 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETT
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECC
Confidence 9999999999999999999998887765 489999999999988889999999864
No 19
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.1e-43 Score=389.21 Aligned_cols=198 Identities=25% Similarity=0.363 Sum_probs=170.5
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc--------cccccE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEI 515 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~~r~~i 515 (1099)
.|+++||++.|. ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- .++++|
T Consensus 24 ~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 24 MIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp SEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred eEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 699999999994 56799999999999999999999999999999999999999999999999541 235679
Q ss_pred EEEecCCCCCcc-cHHHHhccCC-CCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 516 FYVPQRPYTAVG-TLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 516 ~~v~Q~p~l~~~-Ti~eni~~~~-~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
+||||++.++.. |++||+.++. ...........+++.++++.+++.++.++.|. +||||||||++|||||
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~LSgGqkQRv~lAraL 174 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD--------SLSGGQAQRVAIARAL 174 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGG--------GSCHHHHHHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChh--------hCCHHHHHHHHHHHHH
Confidence 999999987764 9999998852 11111111224568889999999998888774 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+.+|++|||||||++||+.+++.+.+.+++ .|+|+|+||||++.+. .||++++|+++
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G 235 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGG 235 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999887754 3899999999999886 69999999864
No 20
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-43 Score=406.72 Aligned_cols=202 Identities=22% Similarity=0.338 Sum_probs=180.0
Q ss_pred CCCcEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccc
Q 001329 441 EANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNK 513 (1099)
Q Consensus 441 ~~~~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~ 513 (1099)
..+.|+++||++.|++ +.++|+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.+ ..+++
T Consensus 16 ~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 3467999999999963 5689999999999999999999999999999999999998 99999999975 23567
Q ss_pred cEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHH
Q 001329 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMA 590 (1099)
Q Consensus 514 ~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIA 590 (1099)
.|+||||++.+|.+|++||+.+... ..++++.++++.+++.++.+++|.+..+ ..+.+|||||||||+||
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~~-------~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalA 167 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNAA-------HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA 167 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTCC-------SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHH
T ss_pred CEEEEcCCcccCccCHHHHhhhccc-------cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHH
Confidence 8999999999999999999975321 3567899999999999999999975433 24667999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 591 RAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|||+.+|++||||||||+||+..+.++.+.+++ .++|+|+||||++.+..||+|++|+++
T Consensus 168 RAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G 229 (390)
T 3gd7_A 168 RSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEEN 229 (390)
T ss_dssp HHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETT
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999998876 389999999999988889999999864
No 21
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3e-43 Score=388.10 Aligned_cols=198 Identities=21% Similarity=0.267 Sum_probs=170.4
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc--------------
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------------- 509 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-------------- 509 (1099)
.|+++||++.|. ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+-
T Consensus 6 ~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 6 KLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 699999999994 56899999999999999999999999999999999999999999999999541
Q ss_pred -----cccccEEEEecCCCCCcc-cHHHHhccCC-CCCCcCCcCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcCh
Q 001329 510 -----DLNKEIFYVPQRPYTAVG-TLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSL 581 (1099)
Q Consensus 510 -----~~r~~i~~v~Q~p~l~~~-Ti~eni~~~~-~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~p~~~~~~~g~~LSG 581 (1099)
.++++++||||++.++.. |++||+.++. ...........+++.++++.+|+.++ .++.|. +|||
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~--------~LSg 156 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPV--------HLSG 156 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGG--------GSCH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcc--------cCCH
Confidence 135679999999987764 9999998842 11111111224568889999999998 888874 8999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||||||+|||||+.+|++|||||||++||+.++..+.+.+++ .|+|+|+||||++.+. .||+|++|+++
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G 229 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 229 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999887754 3899999999999885 69999999864
No 22
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.3e-43 Score=378.25 Aligned_cols=198 Identities=27% Similarity=0.332 Sum_probs=170.6
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c--------ccc-c
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLN-K 513 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~~r-~ 513 (1099)
.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . .++ +
T Consensus 4 ~l~~~~l~~~y~-~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 4 ILRAENIKKVIR-GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred EEEEEeEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 689999999995 4689999999999999999999999999999999999999999999999964 1 122 5
Q ss_pred cEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001329 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1099)
Q Consensus 514 ~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1099)
+|+||||+|.++. .|++||+.++............+++.++++.+++.++.++.|. +||||||||++||||
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgGq~qrv~lara 154 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPY--------ELSGGEQQRVAIARA 154 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGG--------GSCHHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh--------hCCHHHHHHHHHHHH
Confidence 7999999998765 6999999876422111111234568889999999988888774 899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 593 L~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|+.+|+++||||||++||+.++..+.+.+++ .|+|+|+||||++.+..||++++|+++
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G 215 (224)
T 2pcj_A 155 LANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDG 215 (224)
T ss_dssp TTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETT
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999887754 389999999999988889999999864
No 23
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.3e-42 Score=382.73 Aligned_cols=204 Identities=24% Similarity=0.381 Sum_probs=173.9
Q ss_pred CCcEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccc
Q 001329 442 ANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNK 513 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~--~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~ 513 (1099)
.+.|+++||++.|++ ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..+++
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 357999999999965 2679999999999999999999999999999999999999999999999965 12456
Q ss_pred cEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHH
Q 001329 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMA 590 (1099)
Q Consensus 514 ~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIA 590 (1099)
+|+||||+|.++..|++|||.++.... ...+++.++++..++.++++.+|.+... ..+.+|||||||||+||
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lA 168 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRT-----PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALA 168 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSC-----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHH
T ss_pred cEEEEecCCccccccHHHHHhhhcccC-----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHH
Confidence 899999999998889999999875321 1124555667777888877776543221 23568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 591 RAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
|||+++|++||||||||+||+.++..+.+.+++ .|+|+|+||||++.+..||+|++|+++
T Consensus 169 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G 232 (271)
T 2ixe_A 169 RALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEG 232 (271)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETT
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999998865 289999999999998889999999864
No 24
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=8.9e-43 Score=399.06 Aligned_cols=198 Identities=23% Similarity=0.355 Sum_probs=172.9
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEe
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~ 519 (1099)
.|+++||++.|. ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...+++|||||
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 489999999994 5679999999999999999999999999999999999999999999999965 12356899999
Q ss_pred cCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|++.+|. .|++||+.|+...........++++.++++.+++.++.+++|. +|||||||||+|||||+.+|+
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~--------~LSgGq~QRvalArAL~~~P~ 153 (359)
T 2yyz_A 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT--------QLSGGQQQRVALARALVKQPK 153 (359)
T ss_dssp SSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGG--------GSCHHHHHHHHHHHHHTTCCS
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChh--------hCCHHHHHHHHHHHHHHcCCC
Confidence 9998775 5999999997643221112234678899999999999999884 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+||||||||+||+..+.++.+.+++ .|.|+|+||||++.+ ..||+|++|+++
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G 210 (359)
T 2yyz_A 154 VLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQG 210 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999998877653 499999999999987 579999999864
No 25
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5.1e-43 Score=400.17 Aligned_cols=200 Identities=28% Similarity=0.408 Sum_probs=173.9
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYV 518 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v 518 (1099)
..|+++||++.|+++.++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...+++|+||
T Consensus 13 ~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 92 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLV 92 (355)
T ss_dssp EEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEE
T ss_pred ceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEE
Confidence 579999999999545679999999999999999999999999999999999999999999999965 2346789999
Q ss_pred ecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001329 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1099)
Q Consensus 519 ~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1099)
||++.+|. .|++||+.|+...........++++.++++.+++.++.+++|. +|||||||||+|||||+.+|
T Consensus 93 ~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~--------~LSGGq~QRvalArAL~~~P 164 (355)
T 1z47_A 93 FQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH--------ELSGGQQQRVALARALAPRP 164 (355)
T ss_dssp CGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGG--------GSCHHHHHHHHHHHHHTTCC
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcc--------cCCHHHHHHHHHHHHHHcCC
Confidence 99998775 6999999987532211111234678899999999999999884 89999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 598 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 598 ~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
++||||||||+||+..+.++.+.+++ .|+|+|+||||++.+. .||+|++|+++
T Consensus 165 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G 222 (355)
T 1z47_A 165 QVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEG 222 (355)
T ss_dssp SEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999998877653 4999999999999874 69999999864
No 26
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.7e-42 Score=380.13 Aligned_cols=201 Identities=26% Similarity=0.392 Sum_probs=176.6
Q ss_pred CcEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------cccccc
Q 001329 443 NYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 514 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~--~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~ 514 (1099)
+.|+++||++.|++. +++|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|.+ ..++++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999653 4799999999999999999999999999999999999997 8999999965 234678
Q ss_pred EEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHH
Q 001329 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMAR 591 (1099)
Q Consensus 515 i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIAR 591 (1099)
|+||||+|.++..|++||+.++... ..++++.++++.+++.++++++|.+.++ ..+.+|||||||||+|||
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~------~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAr 168 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLD------ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIAR 168 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTT------CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHH
T ss_pred EEEEcCCCcccccCHHHHHhccCCC------CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHH
Confidence 9999999999989999999986421 2456788899999999988887754332 245789999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 592 AL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||+++|+++||||||++||+.++..+.+.+++ .|+|+|+||||++.+..||+|++|+++
T Consensus 169 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G 229 (260)
T 2ghi_A 169 CLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKG 229 (260)
T ss_dssp HHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETT
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999988765 389999999999998889999999864
No 27
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.9e-43 Score=399.90 Aligned_cols=198 Identities=24% Similarity=0.354 Sum_probs=172.0
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEe
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~ 519 (1099)
.|+++||++.|. +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...+++|+|||
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 489999999994 5679999999999999999999999999999999999999999999999965 12356899999
Q ss_pred cCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|++.+|. .|++||+.|+...........++++.++++.++++++.++.|. +|||||||||+|||||+.+|+
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~--------~LSGGq~QRvalArAL~~~P~ 153 (362)
T 2it1_A 82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW--------QLSGGQQQRVAIARALVKEPE 153 (362)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGG--------GSCHHHHHHHHHHHHHTTCCS
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChh--------hCCHHHHHHHHHHHHHHcCCC
Confidence 9998875 5999999987432211111234578899999999999999884 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+||||||||+||+..+.++.+.+++ .|+|+|+||||++.+ ..||+|++|+++
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G 210 (362)
T 2it1_A 154 VLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREG 210 (362)
T ss_dssp EEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999998877653 399999999999876 579999999864
No 28
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2e-42 Score=397.88 Aligned_cols=198 Identities=21% Similarity=0.319 Sum_probs=167.5
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEe
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~ 519 (1099)
.|+++||++.|. +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...+++|||||
T Consensus 11 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 599999999994 4679999999999999999999999999999999999999999999999965 12356899999
Q ss_pred cCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|++.+|. .|++||+.|+...........++++.++++.+++.++.++.|. +|||||||||+|||||+.+|+
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~--------~LSGGq~QRvalArAL~~~P~ 161 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA--------QLSGGQRQRVAVARAIVVEPD 161 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTT--------TCCSSCHHHHHHHHHHTTCCS
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChh--------hCCHHHHHHHHHHHHHhcCCC
Confidence 9998775 6999999998643221111224578899999999999999885 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+||||||||+||+..+.++.+.+++ .|.|+|+||||++.+ ..||+|++|+++
T Consensus 162 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G 218 (372)
T 1v43_A 162 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRG 218 (372)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999998877653 389999999999987 579999999864
No 29
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.8e-42 Score=381.08 Aligned_cols=197 Identities=23% Similarity=0.290 Sum_probs=172.6
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~ 516 (1099)
..|+++||++.|. ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .++++.++
T Consensus 10 ~~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 10 ALLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred ceEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 4799999999994 5789999999999999999999999999999999999999999999999975 23456799
Q ss_pred EEecCCCC-CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 517 YVPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 517 ~v~Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
|++|++.+ +..|++||+.++.... ......+++.++++.+++.++.++.|. +||||||||++|||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYR--------VLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGG--------GCCHHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcc--------cCCHHHHHHHHHHHHHhc
Confidence 99999976 5679999999875432 122345678899999999988887763 899999999999999999
Q ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 596 ------KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 596 ------~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|++|||||||||||+.++..+.+.+++ .|+|+|+||||++.+. .||+|++|+++
T Consensus 159 ~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G 224 (266)
T 4g1u_C 159 LWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQG 224 (266)
T ss_dssp TCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred ccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999887754 2579999999999876 69999999864
No 30
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-42 Score=380.89 Aligned_cols=199 Identities=19% Similarity=0.236 Sum_probs=171.5
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-----ccccccEEE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 517 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~~r~~i~~ 517 (1099)
+.|+++||++.|. ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..++++|+|
T Consensus 14 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 5799999999995 5689999999999999999999999999999999999999999999999964 234678999
Q ss_pred EecCCCCCcc-cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001329 518 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1099)
Q Consensus 518 v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1099)
|||+|.++.. |++||+.++............+++.++++.+++.++.++.|. +||||||||++|||||+.+
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LSgGq~qRv~lAraL~~~ 164 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS--------TYSKGMVRKLLIARALMVN 164 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGG--------GCCHHHHHHHHHHHHHTTC
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChh--------hCCHHHHHHHHHHHHHHcC
Confidence 9999987765 999999875321111111123567889999999998888763 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEEeCC
Q 001329 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDGE 650 (1099)
Q Consensus 597 P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1099)
|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+.. ||++++|+++
T Consensus 165 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G 222 (256)
T 1vpl_A 165 PRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNG 222 (256)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETT
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECC
Confidence 999999999999999999999887754 48999999999998864 9999999864
No 31
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=6.3e-42 Score=378.41 Aligned_cols=198 Identities=26% Similarity=0.348 Sum_probs=172.9
Q ss_pred cEEEEeeEEEcC-CC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc---cccccEE
Q 001329 444 YIEFSGVKVVTP-TG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIF 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~-~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~---~~r~~i~ 516 (1099)
.|+++||++.|+ ++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- .++++|+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 489999999996 33 5799999999999999999999999999999999999999999999999652 3567899
Q ss_pred EEecCC--CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh--hHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001329 517 YVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1099)
Q Consensus 517 ~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~--~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1099)
||||+| .++..|++||+.++.... .......+++.++++.+|+. ++.++.|. +||||||||++||||
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~--------~LSgGq~qRv~lAra 152 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPF--------FLSGGEKRRVAIASV 152 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGG--------GSCHHHHHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChh--------hCCHHHHHHHHHHHH
Confidence 999997 466789999999874322 11223467789999999999 88888774 899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 593 L~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|+++|+++||||||++||+.++..+.+.+++ .|+|+|+||||++.+. .||++++|+++
T Consensus 153 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 153 IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred HHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999887754 3899999999999886 59999999864
No 32
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.1e-42 Score=380.42 Aligned_cols=199 Identities=22% Similarity=0.296 Sum_probs=171.0
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c------cccccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~~r~~i 515 (1099)
..|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . ..++.|
T Consensus 6 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 6 EILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred cEEEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3699999999995 4679999999999999999999999999999999999999999999999964 1 135679
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCC--CC-----------cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcCh
Q 001329 516 FYVPQRPYTAV-GTLRDQLIYPLTS--DQ-----------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSL 581 (1099)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~--~~-----------~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSG 581 (1099)
+||||++.++. .|++||+.++... .. .......+++.++++.+|+.++.++.|. +|||
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSg 156 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG--------ELSG 156 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG--------GSCH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch--------hCCH
Confidence 99999998765 6999999986432 11 1111224568889999999988888773 8999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||||||+|||||+++|++|||||||++||+.++..+.+.+++ .|+|+|+||||++.+. .||+|++|+++
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G 229 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNG 229 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999887764 3899999999999875 79999999864
No 33
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-42 Score=375.96 Aligned_cols=192 Identities=22% Similarity=0.311 Sum_probs=167.4
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEec
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~Q 520 (1099)
|+++||++.|++ +|+|+||++++ |+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...+++|+||||
T Consensus 2 l~~~~l~~~y~~---~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 2 FLKVRAEKRLGN---FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CEEEEEEEEETT---EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred EEEEEEEEEeCC---EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 689999999952 59999999999 9999999999999999999999999999999999964 234678999999
Q ss_pred CCCCCcc-cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 521 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 521 ~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
++.++.. |++||+.++....... ..++++.++++.+|+.++.++.|. +||||||||++|||||+++|++
T Consensus 78 ~~~l~~~ltv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgGqkqRv~lAral~~~p~l 147 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRNVERV--ERDRRVREMAEKLGIAHLLDRKPA--------RLSGGERQRVALARALVIQPRL 147 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHH--HHHHHHHHHHHTTTCTTTTTCCGG--------GSCHHHHHHHHHHHHHTTCCSS
T ss_pred CCccCCCCcHHHHHHHHHHHcCCc--hHHHHHHHHHHHcCCHHHhcCChh--------hCCHHHHHHHHHHHHHHcCCCE
Confidence 9988764 9999999875322111 125678899999999988888774 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+||||||++||+.+++.+.+.+++ .|+|+|++||+++.+ ..||++++|+++
T Consensus 148 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G 203 (240)
T 2onk_A 148 LLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNG 203 (240)
T ss_dssp BEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETT
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999887754 389999999999976 569999999864
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.1e-41 Score=366.20 Aligned_cols=194 Identities=21% Similarity=0.355 Sum_probs=170.3
Q ss_pred CcEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecC
Q 001329 443 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~ 521 (1099)
+.|+++||++.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +|+|+||+
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------~i~~v~q~ 77 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------RISFCSQF 77 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------CEEEECSS
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------EEEEEecC
Confidence 47999999999963 46899999999999999999999999999999999999999999999998 59999999
Q ss_pred CCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCC
Q 001329 522 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 522 p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|.++..|++||+.++... ...+..++++.+++.++++++|....+ ..+.+||||||||++|||||+++|+
T Consensus 78 ~~~~~~tv~enl~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 78 SWIMPGTIKENIIFGVSY-------DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp CCCCSBCHHHHHHTTSCC-------CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred CcccCCCHHHHhhccCCc-------ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999888999999986421 233456678888998888887753322 2457999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAK-VRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~-l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
++||||||++||+.++..+.+. +++ .|+|+|++||+++.+..||++++|+++
T Consensus 151 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G 205 (229)
T 2pze_A 151 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 205 (229)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETT
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECC
Confidence 9999999999999999999986 333 389999999999988889999999864
No 35
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.1e-42 Score=372.99 Aligned_cols=198 Identities=19% Similarity=0.236 Sum_probs=168.3
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-c-----c-ccccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D-LNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~-~r~~i 515 (1099)
+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . + .++.|
T Consensus 5 ~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 5 IVLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred ceEEEEeEEEEEC-CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 4699999999995 4679999999999999999999999999999999999999999999999964 1 1 24469
Q ss_pred EEEecCCCCCcc-cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcC-ChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 516 FYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 516 ~~v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~-l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
+||||+|.++.. |++||+.++.... .......+.+.++++.++ +.++.++.| .+||||||||++|||||
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~l~~~~~l~~~~~~~~--------~~LSgGq~qrv~lAraL 154 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRDLEWIFSLFPRLKERLKQLG--------GTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTC-CCSSHHHHHHHHHHHHCHHHHTTTTSBS--------SSSCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcC-CCHHHHHHHHHHHHHHcccHhhHhcCCh--------hhCCHHHHHHHHHHHHH
Confidence 999999988765 9999999864211 111122356778888884 887777766 48999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 594 ~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+++|+++||||||++||+.++..+.+.+++ .|+|+|+||||++.+ ..||++++|+++
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G 215 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETG 215 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999887754 489999999999866 579999999864
No 36
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3e-42 Score=394.65 Aligned_cols=198 Identities=27% Similarity=0.344 Sum_probs=172.2
Q ss_pred cEEEEeeEEEcCCCCc--eeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--c-------ccc
Q 001329 444 YIEFSGVKVVTPTGNV--LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--S-------DLN 512 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~--vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~-------~~r 512 (1099)
.|+++||++.|. +.+ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . ..+
T Consensus 3 ~l~i~~l~~~y~-~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEG-GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEEC-CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 489999999995 456 9999999999999999999999999999999999999999999999964 1 235
Q ss_pred ccEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001329 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1099)
Q Consensus 513 ~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1099)
++||||||++.+|. .|++||+.|+...........++++.++++.++++++.++.|. +|||||||||+|||
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~--------~LSGGq~QRvalAr 153 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR--------ELSGAQQQRVALAR 153 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGG--------GSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChh--------hCCHHHHHHHHHHH
Confidence 78999999998876 5999999997643221111234678899999999999999884 89999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 592 AL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
||+.+|++||||||||+||+..+.++.+.+++ .|+|+|+||||++.+. .||+|++|+++
T Consensus 154 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G 217 (353)
T 1oxx_K 154 ALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKG 217 (353)
T ss_dssp HHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999998877653 4899999999999774 69999999864
No 37
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4.5e-42 Score=395.54 Aligned_cols=198 Identities=24% Similarity=0.343 Sum_probs=171.4
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--c--------cccc
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--S--------DLNK 513 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~--------~~r~ 513 (1099)
.|+++||++.|. +.++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ . ..++
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 489999999994 5679999999999999999999999999999999999999999999999964 1 1246
Q ss_pred cEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001329 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1099)
Q Consensus 514 ~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1099)
+||||||++.+|. .|++||+.|+...........++++.++++.++|.++.++.|. +|||||||||+||||
T Consensus 82 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~--------~LSGGq~QRvalArA 153 (372)
T 1g29_1 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR--------ELSGGQRQRVALGRA 153 (372)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGG--------GSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcc--------cCCHHHHHHHHHHHH
Confidence 7999999998775 6999999987532211111224578899999999999999884 899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 593 L~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|+.+|++||||||||+||+..+.++.+.+++ .|.|+|+||||++.+. .||+|++|+++
T Consensus 154 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G 216 (372)
T 1g29_1 154 IVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRG 216 (372)
T ss_dssp HHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999998877653 4999999999999874 79999999864
No 38
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=4.2e-42 Score=392.26 Aligned_cols=194 Identities=26% Similarity=0.361 Sum_probs=170.0
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEe
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~ 519 (1099)
+|+++||++.|. ++ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...+++|+|||
T Consensus 1 ml~~~~l~~~y~-~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 1 MIEIESLSRKWK-NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp CEEEEEEEEECS-SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEEC-CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 378999999995 35 9999999999999999999999999999999999999999999999965 22356899999
Q ss_pred cCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|++.+|. .|++||+.|+...... ..++++.++++.++++++.++.|. +|||||||||+|||||+.+|+
T Consensus 79 Q~~~l~~~ltv~enl~~~~~~~~~---~~~~~v~~~l~~~~L~~~~~~~~~--------~LSgGq~QRvalAraL~~~P~ 147 (348)
T 3d31_A 79 QNYSLFPHMNVKKNLEFGMRMKKI---KDPKRVLDTARDLKIEHLLDRNPL--------TLSGGEQQRVALARALVTNPK 147 (348)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHHCC---CCHHHHHHHHHHTTCTTTTTSCGG--------GSCHHHHHHHHHHHHTTSCCS
T ss_pred cCcccCCCCCHHHHHHHHHHHcCC---CHHHHHHHHHHHcCCchHhcCChh--------hCCHHHHHHHHHHHHHHcCCC
Confidence 9998876 5999999987532111 112778999999999999999884 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+||||||||+||+..+.++.+.+++ .|+|+|+||||++.+ ..||+|++|+++
T Consensus 148 lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G 204 (348)
T 3d31_A 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDG 204 (348)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSS
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999998877653 489999999999876 579999999864
No 39
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.1e-41 Score=366.79 Aligned_cols=193 Identities=23% Similarity=0.352 Sum_probs=166.4
Q ss_pred cEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCC
Q 001329 444 YIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1099)
Q Consensus 444 ~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p 522 (1099)
.|+++||++.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +|+||||+|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------~i~~v~Q~~ 75 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------SVAYVPQQA 75 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------CEEEECSSC
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------EEEEEcCCC
Confidence 4899999999964 46899999999999999999999999999999999999999999999998 599999999
Q ss_pred CCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcc---cCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 523 YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 523 ~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~---~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
.++..|++||+.++... ..+...++++.+++.+.++..|.+.. ...+.+|||||||||+|||||+.+|++
T Consensus 76 ~~~~~tv~enl~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 148 (237)
T 2cbz_A 76 WIQNDSLRENILFGCQL-------EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI 148 (237)
T ss_dssp CCCSEEHHHHHHTTSCC-------CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred cCCCcCHHHHhhCcccc-------CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 98889999999987432 11234566777777766665553221 123568999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHH---h--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 600 AILDECTSAVTTDMEERFCAKVR---A--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~---~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+||||||++||+.++..+.+.+. + .|+|+|+||||++.+..||++++|+++
T Consensus 149 llLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G 204 (237)
T 2cbz_A 149 YLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGG 204 (237)
T ss_dssp EEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETT
T ss_pred EEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCC
Confidence 99999999999999999999883 2 489999999999988889999999864
No 40
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=6.4e-41 Score=367.63 Aligned_cols=192 Identities=23% Similarity=0.295 Sum_probs=166.6
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCC
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~ 523 (1099)
.|+++||++.|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ +++++||||+|.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------~~~i~~v~q~~~ 76 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------YQSIGFVPQFFS 76 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------CSCEEEECSCCC
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------eccEEEEcCCCc
Confidence 5899999999963568999999999999999999999999999999999999999999983 457999999998
Q ss_pred CC-cccHHHHhccCCCCC-C---cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001329 524 TA-VGTLRDQLIYPLTSD-Q---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 524 l~-~~Ti~eni~~~~~~~-~---~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
++ ..|++||+.++.... . ......++++.++++.+|+.++.++.| .+||||||||++|||||+.+|+
T Consensus 77 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 77 SPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF--------TSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp CSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG--------GGSCHHHHHHHHHHHHHHTTCS
T ss_pred cCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh--------hhCCHHHHHHHHHHHHHHcCCC
Confidence 76 579999999864211 1 001122456888999999998888766 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+|||||||++||+.++..+.+.+++ . |+|+|++|||++.+ ..||++++|+++
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G 205 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQ 205 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999887754 3 89999999999987 579999999864
No 41
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.2e-41 Score=373.98 Aligned_cols=199 Identities=22% Similarity=0.309 Sum_probs=168.8
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc--------ccccc
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKE 514 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~~r~~ 514 (1099)
..|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- +++++
T Consensus 20 ~~l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred ceEEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 4699999999995 46899999999999999999999999999999999999999999999999641 24578
Q ss_pred EEEEecCCCC-Ccc--cHHHHhccCCCCC----CcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHH
Q 001329 515 IFYVPQRPYT-AVG--TLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1099)
Q Consensus 515 i~~v~Q~p~l-~~~--Ti~eni~~~~~~~----~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1099)
|+||||++.+ +.. |++||+.++.... ........+++.++++.+|+.++.++.|. +|||||||||
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LSgGqkqRv 170 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG--------YLSTGEKQRV 170 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG--------GSCHHHHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh--------hCCHHHHHHH
Confidence 9999999854 433 9999999864211 00111123567889999999988887763 8999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEE--EEEccChhHH-HhcCEEEEEeCC
Q 001329 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSC--ITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 588 aIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~Tv--I~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
+|||||+.+|++|||||||++||+.+++.+.+.+++ .|+|+ |+||||++.+ ..||+|++|+++
T Consensus 171 ~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G 239 (279)
T 2ihy_A 171 MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDG 239 (279)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETT
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999887754 38999 9999999987 579999999864
No 42
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-41 Score=363.12 Aligned_cols=193 Identities=19% Similarity=0.296 Sum_probs=166.5
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc-cccccEEEEecC
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-DLNKEIFYVPQR 521 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-~~r~~i~~v~Q~ 521 (1099)
..|+++||++.|++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- ..++.++||||+
T Consensus 9 ~~l~~~~ls~~y~~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~ 86 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 86 (214)
T ss_dssp CEEEEEEEEEESSS--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred ceEEEEEEEEEeCC--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCC
Confidence 47999999999954 899999999999999999999999999999999999999999999999652 356789999999
Q ss_pred CCCCcc-cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001329 522 PYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1099)
Q Consensus 522 p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1099)
|.++.. |++||+.++...... . ..++++.++++.++++++ ++.+ .+||||||||++|||||+.+|+++
T Consensus 87 ~~~~~~~tv~enl~~~~~~~~~-~-~~~~~~~~~l~~~gl~~~-~~~~--------~~LSgGqkqrv~laraL~~~p~ll 155 (214)
T 1sgw_A 87 IIVPRKISVEDYLKAVASLYGV-K-VNKNEIMDALESVEVLDL-KKKL--------GELSQGTIRRVQLASTLLVNAEIY 155 (214)
T ss_dssp CCCCTTSBHHHHHHHHHHHTTC-C-CCHHHHHHHHHHTTCCCT-TSBG--------GGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred CcCCCCCCHHHHHHHHHHhcCC-c-hHHHHHHHHHHHcCCCcC-CCCh--------hhCCHHHHHHHHHHHHHHhCCCEE
Confidence 988765 999999875321111 1 236778899999999877 6655 489999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEEe
Q 001329 601 ILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLD 648 (1099)
Q Consensus 601 iLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l~ 648 (1099)
||||||++||+.++..+.+.+++ .|+|+|++||+++.+.. +|+++.++
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 156 VLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYS 207 (214)
T ss_dssp EEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGB
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeC
Confidence 99999999999999998887754 38999999999998764 67777554
No 43
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3e-40 Score=361.33 Aligned_cols=188 Identities=21% Similarity=0.264 Sum_probs=166.5
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~ 517 (1099)
.++++||++. ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|.+ .+++++++|
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 5899999985 6899999999999999999999999999999999999999 999999964 134567999
Q ss_pred EecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001329 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1099)
Q Consensus 518 v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1099)
|||++.++. .|++||+.++.... ..++++.++++.+|+.++.++.| .+||||||||++|||||+.+
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 78 LSQQQTPPFATPVWHYLTLHQHDK-----TRTELLNDVAGALALDDKLGRST--------NQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp ECSCCCCCTTCBHHHHHHTTCSST-----TCHHHHHHHHHHTTCGGGTTSBG--------GGCCHHHHHHHHHHHHHHHH
T ss_pred ECCCCccCCCCcHHHHHHHhhccC-----CcHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHHcC
Confidence 999998775 59999999864221 12677889999999998888766 38999999999999999999
Q ss_pred CC-------EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001329 597 PK-------FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1099)
Q Consensus 597 P~-------iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1099)
|+ +|||||||++||+.++..+.+.+++ .|+|+|++|||++.+ ..||++++|+++
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G 209 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGG 209 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99 9999999999999999999887754 389999999999988 579999999864
No 44
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=9.8e-41 Score=365.66 Aligned_cols=198 Identities=25% Similarity=0.344 Sum_probs=162.4
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCc--CcCCccEEEeCCCC-c-----c-cccc
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-S-----D-LNKE 514 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl--~~p~~G~I~i~g~~-~-----~-~r~~ 514 (1099)
.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.+ . . .+..
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 589999999995 46899999999999999999999999999999999999 89999999999964 1 1 1346
Q ss_pred EEEEecCCCCCc-ccHHHHhccCCCC-CCc--CCcCCHHHHHHHHHhcCC-hhHHhcCCCCcccCCCCC-cChHHHHHHH
Q 001329 515 IFYVPQRPYTAV-GTLRDQLIYPLTS-DQE--VEPLTHGGMVELLKNVDL-EYLLDRYPPEKEINWGDE-LSLGEQQRLG 588 (1099)
Q Consensus 515 i~~v~Q~p~l~~-~Ti~eni~~~~~~-~~~--~~~~~~~~i~~~l~~~~l-~~~~~~~p~~~~~~~g~~-LSGGqrQRla 588 (1099)
++||||+|.++. .|++||+.++... ... ......+++.++++.+|+ .++.++.|. + ||||||||++
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--------~~LSgGqkQrv~ 153 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN--------EGFSGGEKKRNE 153 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT--------CC----HHHHHH
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc--------cCCCHHHHHHHH
Confidence 999999998776 4999999875311 000 001123567889999999 577787763 6 9999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh--cCEEEEEeCC
Q 001329 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF--HDVVLSLDGE 650 (1099)
Q Consensus 589 IARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~--~D~Il~l~~~ 650 (1099)
|||||+++|+++|||||||+||+.++..+.+.+++ .|+|+|+||||++.+.. ||++++|+++
T Consensus 154 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G 220 (250)
T 2d2e_A 154 ILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDG 220 (250)
T ss_dssp HHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETT
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECC
Confidence 99999999999999999999999999999988765 38999999999998875 5999999864
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.1e-40 Score=361.02 Aligned_cols=192 Identities=24% Similarity=0.330 Sum_probs=168.7
Q ss_pred cEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc---cccccEE-
Q 001329 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIF- 516 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~---~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~---~~r~~i~- 516 (1099)
+|+++||++.|+++ +++|+|+||+++ ||+++|+||||||||||+|+|+|++ |++|+|.++|.+- ..+++++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 37899999999642 679999999999 9999999999999999999999999 9999999999641 1256899
Q ss_pred EEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
||||+|.+ ..|++||+.++.... ...++++.++++.++++ +..++.| .+||||||||++|||||++
T Consensus 79 ~v~Q~~~l-~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~--------~~LSgGqkqRv~lAraL~~ 145 (263)
T 2pjz_A 79 NLPEAYEI-GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKL--------YKLSAGQSVLVRTSLALAS 145 (263)
T ss_dssp CCGGGSCT-TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBG--------GGSCHHHHHHHHHHHHHHT
T ss_pred EeCCCCcc-CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCCh--------hhCCHHHHHHHHHHHHHHh
Confidence 99999988 889999998753211 23567889999999998 8888766 3899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHH-HhcC-EEEEEeCC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALV-AFHD-VVLSLDGE 650 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i-~~~D-~Il~l~~~ 650 (1099)
+|+++||||||++||+.+++.+.+.+++...|+|++|||++.+ +.|| ++++|+++
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECC
Confidence 9999999999999999999999999987644999999999987 4799 99999864
No 46
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=7e-40 Score=362.19 Aligned_cols=201 Identities=25% Similarity=0.307 Sum_probs=165.3
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCc--CcCCccEEEeCCCC-c-----cc-c
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-S-----DL-N 512 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl--~~p~~G~I~i~g~~-~-----~~-r 512 (1099)
...|+++||++.|. ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.+ . .. +
T Consensus 18 ~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 18 SHMLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp --CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred CceEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 34799999999994 56899999999999999999999999999999999999 57999999999965 1 11 3
Q ss_pred ccEEEEecCCCCCc-ccHHHHhccCCCC----CCc---CCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHH
Q 001329 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTS----DQE---VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGE 583 (1099)
Q Consensus 513 ~~i~~v~Q~p~l~~-~Ti~eni~~~~~~----~~~---~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGq 583 (1099)
..++||||+|.++. .|+.||+.++... ... ......+++.++++.+|+. ++.++.|. .+|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-------~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN-------VGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT-------TTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-------cCCCHHH
Confidence 45999999998765 4999998764210 000 0001135678899999996 46666552 2599999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh--cCEEEEEeCC
Q 001329 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF--HDVVLSLDGE 650 (1099)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~--~D~Il~l~~~ 650 (1099)
||||+|||||+.+|++|||||||++||+.+++.+.+.+++ .|+|+|+||||++.+.. ||++++|+++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G 241 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQG 241 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECC
Confidence 9999999999999999999999999999999999998875 38999999999998874 8999999864
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=8.9e-39 Score=356.93 Aligned_cols=191 Identities=21% Similarity=0.369 Sum_probs=155.1
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecC
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~ 521 (1099)
.+.|+++||++.+ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +|+||||+
T Consensus 38 ~~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------~i~~v~Q~ 107 (290)
T 2bbs_A 38 DDSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------RISFCSQN 107 (290)
T ss_dssp ------------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------CEEEECSS
T ss_pred CceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------EEEEEeCC
Confidence 3469999999853 5799999999999999999999999999999999999999999999988 59999999
Q ss_pred CCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCC
Q 001329 522 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPK 598 (1099)
Q Consensus 522 p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1099)
|.++.+|++||+. +.. .....+.++++.+++.+.++++|....+ ..+.+||||||||++|||||+++|+
T Consensus 108 ~~l~~~tv~enl~-~~~-------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ 179 (290)
T 2bbs_A 108 SWIMPGTIKENII-GVS-------YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179 (290)
T ss_dssp CCCCSSBHHHHHH-TTC-------CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCS
T ss_pred CccCcccHHHHhh-Ccc-------cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCC
Confidence 9998899999998 432 1233456678888998888887753322 2356899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-Hh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 599 FAILDECTSAVTTDMEERFCAKV-RA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 599 iliLDEpTSaLD~~~~~~l~~~l-~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
++||||||++||+.++..+.+.+ ++ .|+|+|+|||+++.+..||++++|+++
T Consensus 180 lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G 234 (290)
T 2bbs_A 180 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234 (290)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETT
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECC
Confidence 99999999999999999999863 33 389999999999998889999999864
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.8e-33 Score=338.79 Aligned_cols=189 Identities=21% Similarity=0.264 Sum_probs=162.5
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCC
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p 522 (1099)
..++++|+++.|.+ ..++++||+|++||+++|+||||||||||+|+|+|+.+|++|+|.+++. .++|+||++
T Consensus 268 ~~l~~~~l~~~~~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~i~~~~q~~ 339 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------ILSYKPQRI 339 (538)
T ss_dssp EEEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------CEEEECSSC
T ss_pred ceEEEcceEEEECC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------eeEeechhc
Confidence 46899999998853 5688899999999999999999999999999999999999999998763 699999998
Q ss_pred CC-CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001329 523 YT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1099)
Q Consensus 523 ~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1099)
.. +..|+.+|+....... . ......+.++++.+++.++.++.|. +|||||||||+|||||+.+|++||
T Consensus 340 ~~~~~~tv~~~l~~~~~~~--~-~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSGGq~QRv~iAraL~~~p~lLl 408 (538)
T 3ozx_A 340 FPNYDGTVQQYLENASKDA--L-STSSWFFEEVTKRLNLHRLLESNVN--------DLSGGELQKLYIAATLAKEADLYV 408 (538)
T ss_dssp CCCCSSBHHHHHHHHCSST--T-CTTSHHHHHTTTTTTGGGCTTSBGG--------GCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred ccccCCCHHHHHHHhhhhc--c-chhHHHHHHHHHHcCCHHHhcCChh--------hCCHHHHHHHHHHHHHHcCCCEEE
Confidence 64 4679999997642211 0 1123457788999999988887774 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 602 LDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 602 LDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||||++||+.++..+++.+++ .|.|+|+||||++.+. .||+|++|+++
T Consensus 409 LDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 409 LDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999998887754 4899999999999886 59999999864
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4e-33 Score=336.41 Aligned_cols=187 Identities=23% Similarity=0.296 Sum_probs=160.4
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCC
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p 522 (1099)
..++++|+++.|.+ ..++++||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++ ..|+||||++
T Consensus 286 ~~l~~~~l~~~~~~--~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------~~i~~v~Q~~ 356 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS--FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------LTVAYKPQYI 356 (538)
T ss_dssp EEEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------CCEEEECSSC
T ss_pred eEEEEeeEEEEECC--EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------ceEEEEecCC
Confidence 46999999998843 47999999999999999999999999999999999999999999862 3699999998
Q ss_pred CC-CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001329 523 YT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1099)
Q Consensus 523 ~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1099)
.. +..|+.|++....... ....+.+.++++.+++.+..++.|. +|||||||||+|||||+.+|++||
T Consensus 357 ~~~~~~tv~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSGGe~qrv~lAraL~~~p~lLl 424 (538)
T 1yqt_A 357 KADYEGTVYELLSKIDASK----LNSNFYKTELLKPLGIIDLYDREVN--------ELSGGELQRVAIAATLLRDADIYL 424 (538)
T ss_dssp CCCCSSBHHHHHHHHHHHH----HTCHHHHHHTTTTTTCGGGTTSBGG--------GCCHHHHHHHHHHHHHTSCCSEEE
T ss_pred cCCCCCcHHHHHHhhhccC----CCHHHHHHHHHHHcCChhhhcCChh--------hCCHHHHHHHHHHHHHHhCCCEEE
Confidence 75 4679999886431000 0134567889999999887777663 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 602 LDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 602 LDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||||++||+.++..+++.+++ .|.|+|+||||++.+. .||+|++|+++
T Consensus 425 LDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~ 478 (538)
T 1yqt_A 425 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGE 478 (538)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999888764 4899999999999886 69999999853
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.4e-33 Score=338.79 Aligned_cols=186 Identities=22% Similarity=0.298 Sum_probs=160.3
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCC
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p 522 (1099)
..++++|+++.|.+ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ .+++|+||++
T Consensus 356 ~~l~~~~l~~~~~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------~~i~~v~Q~~ 426 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------LTVAYKPQYI 426 (607)
T ss_dssp EEEEECCEEEECSS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------CCEEEECSSC
T ss_pred eEEEEeceEEEecc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------eEEEEEecCc
Confidence 46999999999843 47999999999999999999999999999999999999999999862 3699999998
Q ss_pred CC-CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001329 523 YT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1099)
Q Consensus 523 ~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1099)
.. +..|+.|++....... ....+.+.++++.+++.++.++.|. +|||||||||+|||||+++|++||
T Consensus 427 ~~~~~~tv~e~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSGGe~QRv~iAraL~~~p~lLl 494 (607)
T 3bk7_A 427 KAEYEGTVYELLSKIDSSK----LNSNFYKTELLKPLGIIDLYDRNVE--------DLSGGELQRVAIAATLLRDADIYL 494 (607)
T ss_dssp CCCCSSBHHHHHHHHHHHH----HHCHHHHHHTHHHHTCTTTTTSBGG--------GCCHHHHHHHHHHHHHTSCCSEEE
T ss_pred cCCCCCcHHHHHHhhhccC----CCHHHHHHHHHHHcCCchHhcCChh--------hCCHHHHHHHHHHHHHHhCCCEEE
Confidence 65 4679999886531000 0124567889999999888777663 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001329 602 LDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1099)
Q Consensus 602 LDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1099)
|||||++||+.++..+.+.+++ .|.|+|+||||++.+. .||+|++|++
T Consensus 495 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 495 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 9999999999999999888764 4899999999999886 6999999985
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.98 E-value=1.1e-32 Score=336.20 Aligned_cols=189 Identities=25% Similarity=0.310 Sum_probs=158.0
Q ss_pred cEEE--------EeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEE---------EeCC
Q 001329 444 YIEF--------SGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------AKPG 506 (1099)
Q Consensus 444 ~I~~--------~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I---------~i~g 506 (1099)
.|++ +||++.|.+...+|+|+| ++++||+++|+||||||||||+|+|+|+++|++|++ .++|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 4788 899999954335899999 999999999999999999999999999999999996 4566
Q ss_pred CC-c-------cccccEEEEecCCC----CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccC
Q 001329 507 VG-S-------DLNKEIFYVPQRPY----TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574 (1099)
Q Consensus 507 ~~-~-------~~r~~i~~v~Q~p~----l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~ 574 (1099)
.+ . ..+..+++++|+.. .+.+|+.||+.... ..+++.++++.+|+.++.++.+.
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~---------~~~~~~~~L~~lgL~~~~~~~~~----- 227 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD---------EVGKFEEVVKELELENVLDRELH----- 227 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC---------CSSCHHHHHHHTTCTTGGGSBGG-----
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH---------HHHHHHHHHHHcCCCchhCCChh-----
Confidence 54 1 11346889998743 33459999986421 12346789999999988888774
Q ss_pred CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 575 ~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
+|||||||||+|||||+.+|++||||||||+||+.++..+.+.+++ .|.|+|+||||++.+. .+|+|++|+++
T Consensus 228 ---~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 228 ---QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp ---GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 8999999999999999999999999999999999999998887764 3999999999999875 58999999854
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.98 E-value=4e-32 Score=341.83 Aligned_cols=195 Identities=20% Similarity=0.323 Sum_probs=160.1
Q ss_pred CcEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecC
Q 001329 443 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~-~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~ 521 (1099)
..|+++||++.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. .+++|++|+
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----~~I~yv~Q~ 744 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----CRIAYIKQH 744 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----CCEEEECHH
T ss_pred ceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----cceEeeccc
Confidence 36999999999975 368999999999999999999999999999999999999999999999873 259999998
Q ss_pred CCC-----CcccHHHHhccCCCC---------------------------------------------------------
Q 001329 522 PYT-----AVGTLRDQLIYPLTS--------------------------------------------------------- 539 (1099)
Q Consensus 522 p~l-----~~~Ti~eni~~~~~~--------------------------------------------------------- 539 (1099)
+.. ...|+++++.+....
T Consensus 745 ~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ 824 (986)
T 2iw3_A 745 AFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLG 824 (986)
T ss_dssp HHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred hhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhh
Confidence 631 124566555320000
Q ss_pred ----------C----------------------------------CcCCcCCHHHHHHHHHhcCChh-H-HhcCCCCccc
Q 001329 540 ----------D----------------------------------QEVEPLTHGGMVELLKNVDLEY-L-LDRYPPEKEI 573 (1099)
Q Consensus 540 ----------~----------------------------------~~~~~~~~~~i~~~l~~~~l~~-~-~~~~p~~~~~ 573 (1099)
. +.......+++.++++.+|+.+ + .++.+
T Consensus 825 ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~----- 899 (986)
T 2iw3_A 825 ENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI----- 899 (986)
T ss_dssp ESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG-----
T ss_pred hhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCc-----
Confidence 0 0001123567888999999975 4 45555
Q ss_pred CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 574 ~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+++.+.|+|+||||++.+. .||++++|+++
T Consensus 900 ---~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 900 ---RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp ---GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred ---cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 389999999999999999999999999999999999999999999988889999999999885 68999999764
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=1.3e-32 Score=331.82 Aligned_cols=187 Identities=24% Similarity=0.280 Sum_probs=152.9
Q ss_pred EEE-EeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEE---------EeCCCC-c----
Q 001329 445 IEF-SGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------AKPGVG-S---- 509 (1099)
Q Consensus 445 I~~-~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I---------~i~g~~-~---- 509 (1099)
.++ +||++.|++...+++|+| +|++||+++|+||||||||||+|+|+|+++|++|++ .++|.+ .
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 345 589999964335899999 999999999999999999999999999999999996 356653 1
Q ss_pred ---cccccEEEEecCCCC----CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChH
Q 001329 510 ---DLNKEIFYVPQRPYT----AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582 (1099)
Q Consensus 510 ---~~r~~i~~v~Q~p~l----~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGG 582 (1099)
..+..+++++|+... +.+|+.|++.... ..+++.++++.+|+.+..++.+ .+||||
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---------~~~~~~~~l~~lgl~~~~~~~~--------~~LSgG 162 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---------ETGKLEEVVKALELENVLEREI--------QHLSGG 162 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---------SSSCHHHHHHHTTCTTTTTSBG--------GGCCHH
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---------HHHHHHHHHHHcCCChhhhCCh--------hhCCHH
Confidence 112468899997543 2358999885311 1234778999999988777766 389999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001329 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1099)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1099)
|||||+|||||+.+|++|||||||++||+.+..++.+.+++ .|.|+|+||||++.+. .||+|++|++
T Consensus 163 ekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 163 ELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYG 233 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 99999999999999999999999999999999998887754 4999999999999886 5899999975
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.1e-32 Score=327.97 Aligned_cols=184 Identities=20% Similarity=0.303 Sum_probs=155.3
Q ss_pred EeeEEEcCCCCceeeeeeEEEeCC-----CEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCC
Q 001329 448 SGVKVVTPTGNVLVENLTLKVEPG-----SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1099)
Q Consensus 448 ~~v~~~y~~~~~vL~~vsl~i~~G-----e~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p 522 (1099)
+++++.|++...+++|+||++++| |+++|+||||||||||+|+|+|+.+|++|+. +. +..++|+||++
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~-~~------~~~i~~~~q~~ 422 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IP------KLNVSMKPQKI 422 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC-CC------SCCEEEECSSC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC-cc------CCcEEEecccc
Confidence 567778876567899999999999 8899999999999999999999999999973 21 24699999997
Q ss_pred CC-CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001329 523 YT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1099)
Q Consensus 523 ~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1099)
.. +..|+++++....... ....+.+.++++.+++.++.++.|. +|||||||||+|||||+.+|++||
T Consensus 423 ~~~~~~tv~e~~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~--------~LSGGqkQRv~iAraL~~~p~lLl 490 (608)
T 3j16_B 423 APKFPGTVRQLFFKKIRGQ----FLNPQFQTDVVKPLRIDDIIDQEVQ--------HLSGGELQRVAIVLALGIPADIYL 490 (608)
T ss_dssp CCCCCSBHHHHHHHHCSST----TTSHHHHHHTHHHHTSTTTSSSBSS--------SCCHHHHHHHHHHHHTTSCCSEEE
T ss_pred cccCCccHHHHHHHHhhcc----cccHHHHHHHHHHcCChhhhcCChh--------hCCHHHHHHHHHHHHHHhCCCEEE
Confidence 54 5679999886432111 1234567789999999988888774 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 602 LDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 602 LDEpTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||||++||+.+...+.+.+++ .|.|+|+||||++.+. .||+|++|+++
T Consensus 491 LDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~ 544 (608)
T 3j16_B 491 IDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGI 544 (608)
T ss_dssp ECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999998877654 4999999999999886 59999999864
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=5.4e-30 Score=322.56 Aligned_cols=184 Identities=20% Similarity=0.288 Sum_probs=154.3
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCC
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p 522 (1099)
..+...|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+| |+| +|.+..-+.+++|++|++
T Consensus 434 ~~L~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~~~~~~v~q~~ 504 (986)
T 2iw3_A 434 EDLCNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEECRTVYVEHDI 504 (986)
T ss_dssp CEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTTSCEEETTCCC
T ss_pred ceeEEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccccceeEEEEcccc
Confidence 4578889999995 5689999999999999999999999999999999995 543 443311122478999985
Q ss_pred -C-CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 523 -Y-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 523 -~-l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
. .+..|+.||+.+. ... . .+++.++++.+|+. ++.++.+. +||||||||++|||||+.+|++
T Consensus 505 ~~~~~~ltv~e~l~~~--~~~----~-~~~v~~~L~~lgL~~~~~~~~~~--------~LSGGqkQRvaLArAL~~~P~l 569 (986)
T 2iw3_A 505 DGTHSDTSVLDFVFES--GVG----T-KEAIKDKLIEFGFTDEMIAMPIS--------ALSGGWKMKLALARAVLRNADI 569 (986)
T ss_dssp CCCCTTSBHHHHHHTT--CSS----C-HHHHHHHHHHTTCCHHHHHSBGG--------GCCHHHHHHHHHHHHHHTTCSE
T ss_pred cccccCCcHHHHHHHh--hcC----H-HHHHHHHHHHcCCChhhhcCCcc--------cCCHHHHHHHHHHHHHhcCCCE
Confidence 3 3456999999861 111 2 67889999999994 67777663 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 600 AILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 600 liLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||||||++||+.+.+++.+.+++.|.|+|+||||++.+. .||+|++|+++
T Consensus 570 LLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G 621 (986)
T 2iw3_A 570 LLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGL 621 (986)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred EEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999888999999999999885 68999999864
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=2.9e-31 Score=329.00 Aligned_cols=184 Identities=22% Similarity=0.305 Sum_probs=123.6
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHH---------------------HHhcCcCcCCcc-------EEEeCCCC-
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLF---------------------RVLGGLWPLVSG-------HIAKPGVG- 508 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl---------------------~lL~Gl~~p~~G-------~I~i~g~~- 508 (1099)
.++|+||||+|++||+++|+||||||||||+ +++.|+.+|+.| .|.++|.+
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 5689999999999999999999999999998 899999999844 55555543
Q ss_pred -ccccccEEEEecCCCC--------------------CcccHHHHhccCCCCC--CcCCcCCH------HHHHHHHHhcC
Q 001329 509 -SDLNKEIFYVPQRPYT--------------------AVGTLRDQLIYPLTSD--QEVEPLTH------GGMVELLKNVD 559 (1099)
Q Consensus 509 -~~~r~~i~~v~Q~p~l--------------------~~~Ti~eni~~~~~~~--~~~~~~~~------~~i~~~l~~~~ 559 (1099)
...++.+++|+|.+.+ +..|+.||+.+..... ........ .+..++++.+|
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 190 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVG 190 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 1224456666665432 2358999987642110 00000000 11234578888
Q ss_pred ChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEcc
Q 001329 560 LEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK--FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISH 633 (1099)
Q Consensus 560 l~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~--iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH 633 (1099)
+.+. .++.+ .+|||||||||+|||||+.+|+ +|||||||++||+....++.+.+++ .|.|+|+|||
T Consensus 191 L~~~~~~~~~--------~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtH 262 (670)
T 3ux8_A 191 LDYLTLSRSA--------GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262 (670)
T ss_dssp CTTCCTTCBG--------GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CchhhhcCCc--------ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 8764 45555 3899999999999999999998 9999999999999999998887654 5899999999
Q ss_pred ChhHHHhcCEEEEEeC
Q 001329 634 RPALVAFHDVVLSLDG 649 (1099)
Q Consensus 634 ~l~~i~~~D~Il~l~~ 649 (1099)
|++.+..||+|++|++
T Consensus 263 d~~~~~~~d~ii~l~~ 278 (670)
T 3ux8_A 263 DEDTMLAADYLIDIGP 278 (670)
T ss_dssp CHHHHHHCSEEEEECS
T ss_pred CHHHHhhCCEEEEecc
Confidence 9999889999999954
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7e-30 Score=310.96 Aligned_cols=186 Identities=22% Similarity=0.270 Sum_probs=145.6
Q ss_pred eeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEE-----------eCCCC-c-----cc
Q 001329 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA-----------KPGVG-S-----DL 511 (1099)
Q Consensus 449 ~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~-----------i~g~~-~-----~~ 511 (1099)
|++++|..+...+++++ .+++||+++|+||||||||||+|+|+|+++|++|+|. +.|.+ . ..
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 46777865556788877 6899999999999999999999999999999999983 33332 0 01
Q ss_pred cccE--EEEecCCCCC-------cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChH
Q 001329 512 NKEI--FYVPQRPYTA-------VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582 (1099)
Q Consensus 512 r~~i--~~v~Q~p~l~-------~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGG 582 (1099)
.+.+ .+.+|..... ..++.+++.... ....+++.++++.+++.+..++.+. +||||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~~--------~LSgG 225 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-------EKSPEDVKRYIKILQLENVLKRDIE--------KLSGG 225 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-------CSCHHHHHHHHHHHTCTGGGGSCTT--------TCCHH
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-------hhHHHHHHHHHHHcCCcchhCCChH--------HCCHH
Confidence 1222 2334432111 124555544321 1345788999999999998888774 89999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||||+|||||+++|++||||||||+||+.+...+.+.+++ .|.|+|+||||++.+. .+|+|++|+++
T Consensus 226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~ 297 (608)
T 3j16_B 226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297 (608)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999888765 4899999999999886 58999999864
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=6.4e-30 Score=307.91 Aligned_cols=183 Identities=19% Similarity=0.200 Sum_probs=141.8
Q ss_pred eeEEEcCCCCceeeeeeEEE-eCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEE-----------EeCCCCc-----c-
Q 001329 449 GVKVVTPTGNVLVENLTLKV-EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-----------AKPGVGS-----D- 510 (1099)
Q Consensus 449 ~v~~~y~~~~~vL~~vsl~i-~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I-----------~i~g~~~-----~- 510 (1099)
+++.+|..+ -++-..|.+ ++||++||+||||||||||+|+|+|+++|++|+| .++|.+- .
T Consensus 4 ~~~~~~~~~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 4 EVIHRYKVN--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CEEEESSTT--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCceecCCC--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 345567433 244444544 4999999999999999999999999999999998 4566431 0
Q ss_pred c--cccEEEEe----cCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHH
Q 001329 511 L--NKEIFYVP----QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 511 ~--r~~i~~v~----Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
. ...+...+ |.+.++.+++.+++.... ..+++.++++.+++.+..++.+ .+||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---------~~~~~~~~l~~l~l~~~~~~~~--------~~LSgGe~ 144 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKID---------ERGKKDEVKELLNMTNLWNKDA--------NILSGGGL 144 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC---------CSSCHHHHHHHTTCGGGTTSBG--------GGCCHHHH
T ss_pred hhcccchhhccchhhhhhhhccCcHHHHhhcch---------hHHHHHHHHHHcCCchhhcCCh--------hhCCHHHH
Confidence 0 11233333 444455678888765321 1224668899999998877766 38999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1099)
|||+|||||+.+|++||||||||+||+.+..++.+.+++. |+|+|+||||++.+. .||+|++++++
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 9999999999999999999999999999999998887653 899999999999875 58999999753
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=1.2e-28 Score=305.59 Aligned_cols=177 Identities=24% Similarity=0.244 Sum_probs=130.6
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhc----------------------CcCcCCccEEEeCCCCcc-----
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLG----------------------GLWPLVSGHIAKPGVGSD----- 510 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~----------------------Gl~~p~~G~I~i~g~~~~----- 510 (1099)
.++|+||||+|++||+++|+||||||||||+++|+ |+.++ +|.|.+++.+-.
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 46899999999999999999999999999998753 44443 457777764300
Q ss_pred -c-----------------------------------------cccEEEEecCCCCC-----------------------
Q 001329 511 -L-----------------------------------------NKEIFYVPQRPYTA----------------------- 525 (1099)
Q Consensus 511 -~-----------------------------------------r~~i~~v~Q~p~l~----------------------- 525 (1099)
. ....|+++|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 0 00123333332111
Q ss_pred ----------cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 526 ----------VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 526 ----------~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
..|+.||+.+.... ...++..+.++.+++.+ ..++.| .+|||||||||+|||||+
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv~iAraL~ 559 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI------PKIKRKLETLYDVGLGYMKLGQPA--------TTLSGGEAQRVKLAAELH 559 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC------HHHHHHHHHHHHTTCTTSBTTCCG--------GGCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh------hhHHHHHHHHHHcCCchhhccCCc--------hhCCHHHHHHHHHHHHHh
Confidence 24778887764321 12345667888888864 345544 489999999999999999
Q ss_pred cCC---CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeC
Q 001329 595 HKP---KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 595 ~~P---~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
++| ++|||||||++||+.++..+.+.+++ .|.|+|+||||++.+..||+|++|+.
T Consensus 560 ~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~ 620 (670)
T 3ux8_A 560 RRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGP 620 (670)
T ss_dssp SCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEES
T ss_pred hCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecC
Confidence 887 59999999999999999998887654 49999999999999989999999953
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=1.2e-27 Score=301.14 Aligned_cols=218 Identities=23% Similarity=0.312 Sum_probs=153.7
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHH---------HHhcCc------CcCCccE------E
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLF---------RVLGGL------WPLVSGH------I 502 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl---------~lL~Gl------~~p~~G~------I 502 (1099)
.+++++++ ...|+||||+|++|++++|+|+||||||||+ +++.+. +.+.+|. |
T Consensus 589 ~l~v~~~~------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i 662 (916)
T 3pih_A 589 SLKIKGVR------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMI 662 (916)
T ss_dssp EEEEEEEC------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEE
T ss_pred eEEEeeec------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceE
Confidence 45666553 3579999999999999999999999999997 333333 3333332 3
Q ss_pred EeCCCC--c--------------c-------------------------------ccccEEEEecCCCCCc---------
Q 001329 503 AKPGVG--S--------------D-------------------------------LNKEIFYVPQRPYTAV--------- 526 (1099)
Q Consensus 503 ~i~g~~--~--------------~-------------------------------~r~~i~~v~Q~p~l~~--------- 526 (1099)
.+++.+ . . -.+..|+++|+..++.
T Consensus 663 ~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c 742 (916)
T 3pih_A 663 AIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVC 742 (916)
T ss_dssp EECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTT
T ss_pred eeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccc
Confidence 333211 0 0 0123467777654332
Q ss_pred ------------------------ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcCh
Q 001329 527 ------------------------GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSL 581 (1099)
Q Consensus 527 ------------------------~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~p~~~~~~~g~~LSG 581 (1099)
.|+.|++.+.... ....+..++++.+||... +++.+ .+|||
T Consensus 743 ~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~------~~~~~~~~~L~~vGL~~~~lgq~~--------~~LSG 808 (916)
T 3pih_A 743 KGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNI------PSIKRTLQVLHDVGLGYVKLGQPA--------TTLSG 808 (916)
T ss_dssp TTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTC------HHHHHHHHHHHHTTGGGSBTTCCS--------TTCCH
T ss_pred cccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcc------hhHHHHHHHHHHcCCchhhccCCc--------cCCCH
Confidence 2444444432110 122456678888888653 23322 58999
Q ss_pred HHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCCCceEE
Q 001329 582 GEQQRLGMARLFYHKP---KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGEGEWRV 655 (1099)
Q Consensus 582 GqrQRlaIARAL~~~P---~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~~~ 655 (1099)
||||||+|||||+++| +++||||||+|||+.+++.+++.+++ .|.|+|+||||+++++.||+|++|..+|+
T Consensus 809 GErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg--- 885 (916)
T 3pih_A 809 GEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGG--- 885 (916)
T ss_dssp HHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSG---
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCC---
Confidence 9999999999999875 79999999999999999999887764 59999999999999999999999975431
Q ss_pred eecCCCccccccccccccccccchhhhHHHhhhhhhhcccccccccCCCCCchHHHHHhc
Q 001329 656 HDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAA 715 (1099)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~ 715 (1099)
...|++++.++.+++..+ | |+||+.++++
T Consensus 886 -----------------------------~~~G~Iv~~Gtpeel~~~-~-~syt~~~l~~ 914 (916)
T 3pih_A 886 -----------------------------KEGGYIVATGTPEEIAKN-P-HSYTGRFLKN 914 (916)
T ss_dssp -----------------------------GGCCEEEEEESHHHHHSC-T-TCHHHHHHTT
T ss_pred -----------------------------CCCCEEEEEcCHHHHHhC-C-chHHHHHHHh
Confidence 224566666777777764 3 8999999864
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.4e-30 Score=305.92 Aligned_cols=186 Identities=15% Similarity=0.153 Sum_probs=150.7
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCcc-E-EEeCCCCccccccEEEEec
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG-H-IAKPGVGSDLNKEIFYVPQ 520 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G-~-I~i~g~~~~~r~~i~~v~Q 520 (1099)
++++++||++.| .++||++++|++++|+||||||||||+|+|+|+++|++| + |.++|. .++.++++||
T Consensus 117 ~mi~~~nl~~~y-------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---~~~~i~~vpq 186 (460)
T 2npi_A 117 TMKYIYNLHFML-------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---PQQPIFTVPG 186 (460)
T ss_dssp THHHHHHHHHHH-------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---TTSCSSSCSS
T ss_pred chhhhhhhhehh-------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---ccCCeeeecc
Confidence 457778887766 379999999999999999999999999999999999999 9 999982 4678999999
Q ss_pred CCCCC----cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH--Hc
Q 001329 521 RPYTA----VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL--FY 594 (1099)
Q Consensus 521 ~p~l~----~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA--L~ 594 (1099)
++.++ ..|++||+ ++....... ..++++.++++.+|+.+..+ + .+|||||||||+|||| |+
T Consensus 187 ~~~l~~~~~~~tv~eni-~~~~~~~~~--~~~~~~~~ll~~~gl~~~~~--~--------~~LSgGq~qrlalAra~rL~ 253 (460)
T 2npi_A 187 CISATPISDILDAQLPT-WGQSLTSGA--TLLHNKQPMVKNFGLERINE--N--------KDLYLECISQLGQVVGQRLH 253 (460)
T ss_dssp CCEEEECCSCCCTTCTT-CSCBCBSSC--CSSCCBCCEECCCCSSSGGG--C--------HHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcccccccchhhhh-cccccccCc--chHHHHHHHHHHhCCCcccc--h--------hhhhHHHHHHHHHHHHHHhc
Confidence 98432 35899998 654321000 11223445677888876654 3 3799999999999999 99
Q ss_pred cCCCE----EEEeC-CCCCCCHHHHHHHHHHHHhcCcEEEEEccChh------HH-HhcCE-----EEEEeCCCc
Q 001329 595 HKPKF----AILDE-CTSAVTTDMEERFCAKVRAMGTSCITISHRPA------LV-AFHDV-----VLSLDGEGE 652 (1099)
Q Consensus 595 ~~P~i----liLDE-pTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~------~i-~~~D~-----Il~l~~~g~ 652 (1099)
.+|++ +|||| ||++||+. .+.+.+++++.+.|+|+|+|+.. .+ ..+|+ |++|+++|+
T Consensus 254 ~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~ 327 (460)
T 2npi_A 254 LDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDG 327 (460)
T ss_dssp HCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTT
T ss_pred cCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCc
Confidence 99999 99999 99999999 77788888888999999999987 44 46899 999984443
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.93 E-value=1.8e-26 Score=288.26 Aligned_cols=193 Identities=25% Similarity=0.309 Sum_probs=135.2
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHH-hcCcC-------cC-----------------
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRV-LGGLW-------PL----------------- 497 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~l-L~Gl~-------~p----------------- 497 (1099)
..|+++|+++ ..|+||||+|++||+++|+|+||||||||++. |+|+. +|
T Consensus 501 ~~L~v~~l~~------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 501 GWLELNGVTR------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp CEEEEEEEEE------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred ceEEEEeeee------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 4699999986 26999999999999999999999999999997 76554 23
Q ss_pred -Ccc-------EEEeCCCC--cc--------------ccc---------cEEEEecC----------------------C
Q 001329 498 -VSG-------HIAKPGVG--SD--------------LNK---------EIFYVPQR----------------------P 522 (1099)
Q Consensus 498 -~~G-------~I~i~g~~--~~--------------~r~---------~i~~v~Q~----------------------p 522 (1099)
.+| .|.+++.+ .. +|+ ..||.++. -
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~ 654 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVEL 654 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETT
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhh
Confidence 345 56666542 00 010 01111111 0
Q ss_pred CC-------------------------CcccHHHHhccCCCCC-Cc-CCcCCHHHHHHHHHhcCChhH-HhcCCCCcccC
Q 001329 523 YT-------------------------AVGTLRDQLIYPLTSD-QE-VEPLTHGGMVELLKNVDLEYL-LDRYPPEKEIN 574 (1099)
Q Consensus 523 ~l-------------------------~~~Ti~eni~~~~~~~-~~-~~~~~~~~i~~~l~~~~l~~~-~~~~p~~~~~~ 574 (1099)
.+ ...+|.||+....... .. ......+++.++++.++|.+. .++.+
T Consensus 655 ~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~------ 728 (842)
T 2vf7_A 655 LFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPA------ 728 (842)
T ss_dssp CSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCG------
T ss_pred hcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCCc------
Confidence 00 0124444443221000 00 000112456788999998763 34444
Q ss_pred CCCCcChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEe
Q 001329 575 WGDELSLGEQQRLGMARLFYHK---PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLD 648 (1099)
Q Consensus 575 ~g~~LSGGqrQRlaIARAL~~~---P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1099)
.+|||||||||+|||+|+++ |+++||||||++||+...+.+.+.+++ .|.|||+||||++.+..||+|++|.
T Consensus 729 --~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~ 806 (842)
T 2vf7_A 729 --TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIG 806 (842)
T ss_dssp --GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred --ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEC
Confidence 48999999999999999996 799999999999999999998887654 5999999999999998899999996
Q ss_pred C
Q 001329 649 G 649 (1099)
Q Consensus 649 ~ 649 (1099)
.
T Consensus 807 p 807 (842)
T 2vf7_A 807 P 807 (842)
T ss_dssp S
T ss_pred C
Confidence 4
No 63
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.93 E-value=2.9e-26 Score=286.56 Aligned_cols=187 Identities=25% Similarity=0.280 Sum_probs=136.1
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhc-CcC----c---CCcc-------------E
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLG-GLW----P---LVSG-------------H 501 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~-Gl~----~---p~~G-------------~ 501 (1099)
..++++|++. ..|+||||+|++||+++|+|+||||||||++.|+ |.. . +..| .
T Consensus 628 ~~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 628 RWLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp CEEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred eEEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 4688998862 3699999999999999999999999999999864 221 1 1233 3
Q ss_pred EEeCCCC--cc--------------c---------cccEEEEecCCCCC-------------------------------
Q 001329 502 IAKPGVG--SD--------------L---------NKEIFYVPQRPYTA------------------------------- 525 (1099)
Q Consensus 502 I~i~g~~--~~--------------~---------r~~i~~v~Q~p~l~------------------------------- 525 (1099)
|.+++.+ .. + .+.+||++|...+.
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 5666532 00 0 12346666643210
Q ss_pred ------------------------cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcC
Q 001329 526 ------------------------VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELS 580 (1099)
Q Consensus 526 ------------------------~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~p~~~~~~~g~~LS 580 (1099)
..|+.|++.+.... ....+..++++.+||.+ ..++.+ .+||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~------~~~~~~~~~L~~~gL~~~~l~~~~--------~~LS 847 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI------PKIKRKLETLYDVGLGYMKLGQPA--------TTLS 847 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC------HHHHHHHHHHHHTTCSSSBTTCCG--------GGCC
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc------hhHHHHHHHHHHcCCCcccccCch--------hhCC
Confidence 11344444332110 01234567888999876 455555 3899
Q ss_pred hHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeC
Q 001329 581 LGEQQRLGMARLFYHKP---KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 581 GGqrQRlaIARAL~~~P---~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
|||||||+|||+|+++| +++||||||+|||+.+...+.+.+++ .|.|+|+|||+++.+..||+|++|..
T Consensus 848 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p 922 (972)
T 2r6f_A 848 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGP 922 (972)
T ss_dssp HHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECS
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcC
Confidence 99999999999999875 99999999999999999998887754 59999999999999988999999963
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.93 E-value=4.5e-26 Score=266.28 Aligned_cols=189 Identities=14% Similarity=0.104 Sum_probs=133.0
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc--------------------------------------CCcc
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--------------------------------------LVSG 500 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--------------------------------------p~~G 500 (1099)
.+++++||++++| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 999999999999999999966653 4578
Q ss_pred EEEeCCCC------ccccc-cEEEEecCCCCCcccHHHHhccCCCCCCc----------------------CCcC-----
Q 001329 501 HIAKPGVG------SDLNK-EIFYVPQRPYTAVGTLRDQLIYPLTSDQE----------------------VEPL----- 546 (1099)
Q Consensus 501 ~I~i~g~~------~~~r~-~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~----------------------~~~~----- 546 (1099)
++.++|.+ .++.+ .+++++|++.++..+..++..+-...... ....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 89999965 12223 48999999877655444332221100000 0000
Q ss_pred ---------------------------------CHHHHHHHHHhcCChhH--HhcC-------CCCc-----cc-CCCCC
Q 001329 547 ---------------------------------THGGMVELLKNVDLEYL--LDRY-------PPEK-----EI-NWGDE 578 (1099)
Q Consensus 547 ---------------------------------~~~~i~~~l~~~~l~~~--~~~~-------p~~~-----~~-~~g~~ 578 (1099)
-.+.+.+.++.+++.+. .-++ +.+. .. ..+.+
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 01223344444444320 0000 0000 00 01111
Q ss_pred --------cChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEE
Q 001329 579 --------LSLGEQQRLGMARLFYHKP--KFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLS 646 (1099)
Q Consensus 579 --------LSGGqrQRlaIARAL~~~P--~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~ 646 (1099)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.+++. |.|+|+|||+++.+..||++++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 7999999999999999999 999999999999999999999998864 7999999999999989999999
Q ss_pred Ee
Q 001329 647 LD 648 (1099)
Q Consensus 647 l~ 648 (1099)
|+
T Consensus 368 l~ 369 (415)
T 4aby_A 368 VE 369 (415)
T ss_dssp EE
T ss_pred EE
Confidence 94
No 65
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.92 E-value=1.2e-29 Score=284.16 Aligned_cols=197 Identities=16% Similarity=0.212 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCcCCCCcEEEEeeEEEcCCCCceeeeeeEEEeC
Q 001329 391 QSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEP 470 (1099)
Q Consensus 391 ~~l~~l~~~~~~l~~~~~~~~Ri~ell~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~vL~~vsl~i~~ 470 (1099)
.++..+...+..++++..+.+|+.++++.+++...+. ... ....+.|+++||+|.|+ .++|+|+||+|++
T Consensus 56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~------~~~--~~~~~~i~~~~vs~~y~--~~vL~~vsl~i~~ 125 (305)
T 2v9p_A 56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE------GSW--KSILTFFNYQNIELITF--INALKLWLKGIPK 125 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS------CCT--HHHHHHHHHTTCCHHHH--HHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC------Ccc--cccCCeEEEEEEEEEcC--hhhhccceEEecC
Confidence 5566777778888999999999999998765432110 000 00123589999999996 6799999999999
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHH-HhccCCCCCCcCCcCCHH
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRD-QLIYPLTSDQEVEPLTHG 549 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~e-ni~~~~~~~~~~~~~~~~ 549 (1099)
|++++|+||||||||||+++|+|++ +|+|. ++++|+|.+|.+|+++ ||.++.. .++
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~------------~~v~q~~~lf~~ti~~~ni~~~~~-------~~~- 182 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL------------SFANHKSHFWLASLADTRAALVDD-------ATH- 182 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH---TCEEE------------CGGGTTSGGGGGGGTTCSCEEEEE-------ECH-
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc---CceEE------------EEecCccccccccHHHHhhccCcc-------ccH-
Confidence 9999999999999999999999999 79883 5789999999999998 9988521 122
Q ss_pred HHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEE
Q 001329 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCI 629 (1099)
Q Consensus 550 ~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI 629 (1099)
.+.+.++.+ +|.+.. |.+|||||||| |||++++|+||| ||+||+.++..+..
T Consensus 183 ~~~~~i~~~--------L~~gld---g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------- 234 (305)
T 2v9p_A 183 ACWRYFDTY--------LRNALD---GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------- 234 (305)
T ss_dssp HHHHHHHHT--------TTGGGG---TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----------
T ss_pred HHHHHHHHH--------hHccCC---ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----------
Confidence 344444432 232222 56899999999 999999999999 99999999988862
Q ss_pred EEccChhHHHhcCEEEEEeCC
Q 001329 630 TISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 630 ~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+|||++.+..+|+| +|+++
T Consensus 235 -ltH~~~~~~~aD~i-vl~~G 253 (305)
T 2v9p_A 235 -LHSRVQTFRFEQPC-TDESG 253 (305)
T ss_dssp -GTTTEEEEECCCCC-CCC--
T ss_pred -HhCCHHHHHhCCEE-EEeCC
Confidence 39999999999999 88764
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.92 E-value=1e-25 Score=282.67 Aligned_cols=187 Identities=21% Similarity=0.241 Sum_probs=133.0
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhc-Cc----Cc---CCccE-------------
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLG-GL----WP---LVSGH------------- 501 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~-Gl----~~---p~~G~------------- 501 (1099)
..++++|++. .+|+||||+|++||+++|+|+||||||||+++|+ |. .. +..|.
T Consensus 646 ~~L~v~~l~~------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 719 (993)
T 2ygr_A 646 RQLTVVGARE------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKL 719 (993)
T ss_dssp SEEEEEEECS------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEE
T ss_pred ceEEEecCcc------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceE
Confidence 4689999862 3699999999999999999999999999999864 21 21 23443
Q ss_pred EEeCCCCc--c--------------c---------cccEEEEecCCCCC-------------------------------
Q 001329 502 IAKPGVGS--D--------------L---------NKEIFYVPQRPYTA------------------------------- 525 (1099)
Q Consensus 502 I~i~g~~~--~--------------~---------r~~i~~v~Q~p~l~------------------------------- 525 (1099)
|.+++.+- . + .+..||++|...+.
T Consensus 720 i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~ 799 (993)
T 2ygr_A 720 VRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEV 799 (993)
T ss_dssp ECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTT
T ss_pred EEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehh
Confidence 33333210 0 0 12345555542110
Q ss_pred ------------------------cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcC
Q 001329 526 ------------------------VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELS 580 (1099)
Q Consensus 526 ------------------------~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~p~~~~~~~g~~LS 580 (1099)
..|+.|++.+.... ....+..++++.+||.+ ..++.+ .+||
T Consensus 800 c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~------~~~~~~~~~L~~lgL~~~~l~~~~--------~~LS 865 (993)
T 2ygr_A 800 CQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI------AGVHRYLRTLVDVGLGYVRLGQPA--------PTLS 865 (993)
T ss_dssp TTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC------HHHHHHHHHHHHTTGGGSBTTCCG--------GGSC
T ss_pred ccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc------hHHHHHHHHHHHcCCCcccccCcc--------ccCC
Confidence 01233333321100 01233567888888876 445544 4899
Q ss_pred hHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeC
Q 001329 581 LGEQQRLGMARLFYHKP---KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 581 GGqrQRlaIARAL~~~P---~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
|||||||+|||+|+++| +++||||||+|||+.....+.+.+++ .|.|+|+|||+++.+..||+|++|..
T Consensus 866 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p 940 (993)
T 2ygr_A 866 GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGP 940 (993)
T ss_dssp HHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECC
Confidence 99999999999999875 99999999999999999999887754 59999999999999989999999964
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.90 E-value=1.4e-26 Score=246.68 Aligned_cols=144 Identities=16% Similarity=0.217 Sum_probs=97.4
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCC--C-ccccccEEEEecCCCCCcccHHHHh-
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV--G-SDLNKEIFYVPQRPYTAVGTLRDQL- 533 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~--~-~~~r~~i~~v~Q~p~l~~~Ti~eni- 533 (1099)
+++|+|+ ++||+++|+||||||||||+|+|+|+ +|++|+|..... + ...+++++|+||++ +||+
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------~enl~ 80 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------NEKID 80 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------------C
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-------HHHHH
Confidence 5689986 89999999999999999999999999 999999843111 1 23567899999997 4555
Q ss_pred ccCCCCC-CcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 001329 534 IYPLTSD-QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612 (1099)
Q Consensus 534 ~~~~~~~-~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~ 612 (1099)
.+..... ........+++.++++. + | |||||++|||||+.+|++|||||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~-g-------------------l--Gq~qrv~lAraL~~~p~lllLDEPts~---- 134 (208)
T 3b85_A 81 PYLRPLHDALRDMVEPEVIPKLMEA-G-------------------I--VEVAPLAYMRGRTLNDAFVILDEAQNT---- 134 (208)
T ss_dssp TTTHHHHHHHTTTSCTTHHHHHHHT-T-------------------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHh-C-------------------C--chHHHHHHHHHHhcCCCEEEEeCCccc----
Confidence 3321000 00000111223333332 1 2 999999999999999999999999999
Q ss_pred HHHHHHHHHHh--cCcEEEEEccChhHHHh
Q 001329 613 MEERFCAKVRA--MGTSCITISHRPALVAF 640 (1099)
Q Consensus 613 ~~~~l~~~l~~--~g~TvI~ItH~l~~i~~ 640 (1099)
++..+.+.+++ .|+|+| ||||++.+..
T Consensus 135 ~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 135 TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 77777777765 388999 9999986643
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.89 E-value=1.2e-24 Score=224.13 Aligned_cols=147 Identities=14% Similarity=0.075 Sum_probs=102.1
Q ss_pred eeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCC--cccHHHHhccCCCCC
Q 001329 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTA--VGTLRDQLIYPLTSD 540 (1099)
Q Consensus 463 ~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~--~~Ti~eni~~~~~~~ 540 (1099)
||||++++||+++|+||||||||||+|++.+-.+ .+++ +. ..++++|++.-. .+++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~~~--d~---~~g~~~~~~~~~~~~~~~~~~~~------ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VISS--DF---CRGLMSDDENDQTVTGAAFDVLH------ 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EEEH--HH---HHHHHCSSTTCGGGHHHHHHHHH------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EEcc--HH---HHHHhcCcccchhhHHHHHHHHH------
Confidence 6899999999999999999999999999664222 1111 11 125777776421 122222211
Q ss_pred CcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH------
Q 001329 541 QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME------ 614 (1099)
Q Consensus 541 ~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~------ 614 (1099)
...+.....+.....+.. ...|||||||++||||+..+|++++|||||++||+.++
T Consensus 64 ---------~~~~~~~~~g~~~~~~~~---------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~ 125 (171)
T 4gp7_A 64 ---------YIVSKRLQLGKLTVVDAT---------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQ 125 (171)
T ss_dssp ---------HHHHHHHHTTCCEEEESC---------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCC
T ss_pred ---------HHHHHHHhCCCeEEEECC---------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCC
Confidence 111122223333222221 24699999999999999999999999999999999944
Q ss_pred ----------HHHHHHH---HhcCcEEEEEccChhHHHhcCEE
Q 001329 615 ----------ERFCAKV---RAMGTSCITISHRPALVAFHDVV 644 (1099)
Q Consensus 615 ----------~~l~~~l---~~~g~TvI~ItH~l~~i~~~D~I 644 (1099)
..+.+.+ ++.|.|+|+|||+++.+..++++
T Consensus 126 ~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 126 VEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 6677664 34599999999999999877664
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=4.1e-23 Score=234.01 Aligned_cols=189 Identities=19% Similarity=0.135 Sum_probs=124.2
Q ss_pred eeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcC----------------------------------------------
Q 001329 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW---------------------------------------------- 495 (1099)
Q Consensus 462 ~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~---------------------------------------------- 495 (1099)
+++++++.+| +.+|+||||||||||+++|..+.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678899999 99999999999999999998442
Q ss_pred ----cCCccEEEeCCCC------ccccccEEEEecCCCCC-cccHHHHhccCCCCC-CcCCc--------CCHHHHHHHH
Q 001329 496 ----PLVSGHIAKPGVG------SDLNKEIFYVPQRPYTA-VGTLRDQLIYPLTSD-QEVEP--------LTHGGMVELL 555 (1099)
Q Consensus 496 ----~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~-~~Ti~eni~~~~~~~-~~~~~--------~~~~~i~~~l 555 (1099)
.+.+|++.+||.+ .+....+++.||+..+. .+++.+++....... ...+. ...+++.+.+
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3345677888854 12234577777776544 678888876532111 00000 0111222221
Q ss_pred Hhc------------CChhHH-hcCCCCcc---------cCCCCCcChHHHHHHHHHHHHc----cCCCEEEEeCCCCCC
Q 001329 556 KNV------------DLEYLL-DRYPPEKE---------INWGDELSLGEQQRLGMARLFY----HKPKFAILDECTSAV 609 (1099)
Q Consensus 556 ~~~------------~l~~~~-~~~p~~~~---------~~~g~~LSGGqrQRlaIARAL~----~~P~iliLDEpTSaL 609 (1099)
..+ .+.+.. +.++.+.. .....+||||||||++|||||+ .+|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 110000 00111110 1123589999999999999997 689999999999999
Q ss_pred CHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEE--EEEeCCC
Q 001329 610 TTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVV--LSLDGEG 651 (1099)
Q Consensus 610 D~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~I--l~l~~~g 651 (1099)
|+...+.+.+.+++. |.|+|+|||+.+....||++ ++++++.
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~ 300 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGV 300 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSC
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCE
Confidence 999999999888764 78999999998888889987 7777643
No 70
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.86 E-value=1.2e-21 Score=225.82 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=68.6
Q ss_pred CCcChHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEE
Q 001329 577 DELSLGEQQRLGMARLFY------HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSL 647 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~------~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l 647 (1099)
.+||||||||++|||||+ .+|+++||||||++||+.+...+.+.+++ .|.|+|+|||+++....+|++++|
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~~l 357 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKLRI 357 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEEEE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEE
Confidence 479999999999999999 79999999999999999999999988765 489999999999998889999999
Q ss_pred eCC
Q 001329 648 DGE 650 (1099)
Q Consensus 648 ~~~ 650 (1099)
+++
T Consensus 358 ~~G 360 (365)
T 3qf7_A 358 TGG 360 (365)
T ss_dssp ETT
T ss_pred ECC
Confidence 864
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.85 E-value=9.1e-23 Score=211.98 Aligned_cols=134 Identities=15% Similarity=0.180 Sum_probs=96.6
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----c--cccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----S--DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~--~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~ 546 (1099)
+++|+||||||||||+|+|+|+++ |.++|.+ . ..+++++|++|++ +..+++. .... .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~~------~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSKF------F 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EETT------C
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhhc------C
Confidence 689999999999999999999985 2333321 1 3456899999987 2223321 1000 0
Q ss_pred CHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHH
Q 001329 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL-----FYHKPKFAILDE--CTSAVTTDMEERFCA 619 (1099)
Q Consensus 547 ~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA-----L~~~P~iliLDE--pTSaLD~~~~~~l~~ 619 (1099)
.. .+..++. +.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+
T Consensus 65 ~~------------~~~~~~~--------~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 65 TS------------KKLVGSY--------GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp CC------------SSEETTE--------EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred Cc------------ccccccc--------ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 00 0112222 24799999999999996 999999999999 999999999999999
Q ss_pred HHHhcCcEEEEEcc---ChhHHH-hcCE
Q 001329 620 KVRAMGTSCITISH---RPALVA-FHDV 643 (1099)
Q Consensus 620 ~l~~~g~TvI~ItH---~l~~i~-~~D~ 643 (1099)
.+++.+.|+|+++| +...+. .+|+
T Consensus 125 ~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 125 IMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 99888888888885 777665 3554
No 72
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.85 E-value=5.4e-24 Score=247.77 Aligned_cols=166 Identities=17% Similarity=0.148 Sum_probs=130.6
Q ss_pred CceeeeeeEEEeCCC--------------------EEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEE
Q 001329 458 NVLVENLTLKVEPGS--------------------NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFY 517 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge--------------------~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~ 517 (1099)
+.+|+||||++++|+ +++|+||||||||||+|+|+|+.+|++|+|.++|.+.. + .++
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-~--~~~ 112 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-M--ERH 112 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----C--CCE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-e--eEE
Confidence 468999999999999 99999999999999999999999999999999886421 1 278
Q ss_pred EecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChH--HHHHHHHHHHHcc
Q 001329 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG--EQQRLGMARLFYH 595 (1099)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGG--qrQRlaIARAL~~ 595 (1099)
++|++..+..|+.||+.++.. ..++.++++.+++.+. +..+ .|||| ||||++|||||.+
T Consensus 113 v~q~~~~~~ltv~D~~g~~~~---------~~~~~~~L~~~~L~~~-~~~~---------~lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 113 PYKHPNIPNVVFWDLPGIGST---------NFPPDTYLEKMKFYEY-DFFI---------IISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp EEECSSCTTEEEEECCCGGGS---------SCCHHHHHHHTTGGGC-SEEE---------EEESSCCCHHHHHHHHHHHH
T ss_pred eccccccCCeeehHhhcccch---------HHHHHHHHHHcCCCcc-CCeE---------EeCCCCccHHHHHHHHHHHh
Confidence 999986666788888776532 1236678888887654 2222 29999 9999999999999
Q ss_pred ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHh--------c----CcEEEEEccChhH--HH-hcCEEE
Q 001329 596 ----------KPKFAILDECTSAVTTDMEERFCAKVRA--------M----GTSCITISHRPAL--VA-FHDVVL 645 (1099)
Q Consensus 596 ----------~P~iliLDEpTSaLD~~~~~~l~~~l~~--------~----g~TvI~ItH~l~~--i~-~~D~Il 645 (1099)
+|++++|||||++||+..+.++.+.+++ . ..++++.||.++. +. .+|+|.
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9999999999999999988877655432 2 2578889998774 33 355553
No 73
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.83 E-value=1.6e-22 Score=229.82 Aligned_cols=128 Identities=14% Similarity=0.143 Sum_probs=102.5
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc----cccccEEEEecCCCCCcccHHHHhc
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQRPYTAVGTLRDQLI 534 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~----~~r~~i~~v~Q~p~l~~~Ti~eni~ 534 (1099)
++++++|+++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+. ..++.+++++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~--------------- 223 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFF--------------- 223 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEEC---------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEe---------------
Confidence 489999999999999999999999999999999999999999999988531 0111111111
Q ss_pred cCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 001329 535 YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614 (1099)
Q Consensus 535 ~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~ 614 (1099)
| |||+||++|||||..+|+++|+||||+. +..
T Consensus 224 -----------------------------------------g----gg~~~r~~la~aL~~~p~ilildE~~~~---e~~ 255 (330)
T 2pt7_A 224 -----------------------------------------G----GNITSADCLKSCLRMRPDRIILGELRSS---EAY 255 (330)
T ss_dssp -----------------------------------------B----TTBCHHHHHHHHTTSCCSEEEECCCCST---HHH
T ss_pred -----------------------------------------C----CChhHHHHHHHHhhhCCCEEEEcCCChH---HHH
Confidence 0 8999999999999999999999999982 232
Q ss_pred HHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 615 ERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 615 ~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+ +++.+...+.|+|+++|+.+....+|++++|+++
T Consensus 256 ~-~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g 290 (330)
T 2pt7_A 256 D-FYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSS 290 (330)
T ss_dssp H-HHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHT
T ss_pred H-HHHHHhcCCCEEEEEEcccHHHHHhhhheehhcC
Confidence 2 3333433345899999999988889999988754
No 74
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.83 E-value=1.5e-23 Score=224.62 Aligned_cols=167 Identities=14% Similarity=0.082 Sum_probs=109.4
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-------ccccccEEEEecCCCCCcccH--
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIFYVPQRPYTAVGTL-- 529 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~~r~~i~~v~Q~p~l~~~Ti-- 529 (1099)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+ ...++.++|+||++..|...+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 5 99998 654 123567999999986553211
Q ss_pred HHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH-----HHHHccCCCEEEEeC
Q 001329 530 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM-----ARLFYHKPKFAILDE 604 (1099)
Q Consensus 530 ~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaI-----ARAL~~~P~iliLDE 604 (1099)
.+++.++.- .........+++.++++...+. .++ .+|||||+||++| ||+++.+|++++|||
T Consensus 87 ~~~l~~~~~-~~~~~g~~~~~i~~~l~~~~~~-il~-----------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde 153 (218)
T 1z6g_A 87 EDFLEYDNY-ANNFYGTLKSEYDKAKEQNKIC-LFE-----------MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS 153 (218)
T ss_dssp TCEEEEEEE-TTEEEEEEHHHHHHHHHTTCEE-EEE-----------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred cchhhhhhc-ccccCCCcHHHHHHHHhCCCcE-EEE-----------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence 112221100 0000012244566676654321 111 3699999999999 899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeC
Q 001329 605 CTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 605 pTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
||+++|.+++..+.+.+.+ .+.| ++| +..+|.|++.++
T Consensus 154 ~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 154 RLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999888877653 2344 566 356777776653
No 75
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.82 E-value=4e-23 Score=233.03 Aligned_cols=167 Identities=15% Similarity=0.061 Sum_probs=126.9
Q ss_pred CCcEEEEeeEEEcCCCCceeeeeeEE-----------------------EeCCCEEEEEcCCCCchhHHHHHhcCcCcCC
Q 001329 442 ANYIEFSGVKVVTPTGNVLVENLTLK-----------------------VEPGSNLLITGPNGSGKSSLFRVLGGLWPLV 498 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~~vsl~-----------------------i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~ 498 (1099)
.+.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++|+
T Consensus 41 ~~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 41 GEQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp TCCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 35689999999883 677777765 8999999999999999999999999999998
Q ss_pred ccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCC
Q 001329 499 SGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 578 (1099)
Q Consensus 499 ~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~ 578 (1099)
.|. +++++|+|+++++..|++||+.+... .+.....+.+.+.+.++.++ .+..+..+ .+
T Consensus 118 ~G~-----------~~v~~v~qd~~~~~~t~~e~~~~~~~-~g~~~~~d~~~~~~~L~~l~-~~~~~~~~--------~~ 176 (312)
T 3aez_A 118 DHH-----------PRVDLVTTDGFLYPNAELQRRNLMHR-KGFPESYNRRALMRFVTSVK-SGSDYACA--------PV 176 (312)
T ss_dssp TTC-----------CCEEEEEGGGGBCCHHHHHHTTCTTC-TTSGGGBCHHHHHHHHHHHH-TTCSCEEE--------EE
T ss_pred CCC-----------CeEEEEecCccCCcccHHHHHHHHHh-cCCChHHHHHHHHHHHHHhC-CCcccCCc--------cc
Confidence 663 36999999998877799999876321 11122245567778887776 33222222 27
Q ss_pred cChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-cCcEEEEEccChhHH
Q 001329 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-MGTSCITISHRPALV 638 (1099)
Q Consensus 579 LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~-~g~TvI~ItH~l~~i 638 (1099)
|||||+||+++|||++.+|+|+|+|||++.+|+.. ..+.+ .+ ..|+|+|+.+..
T Consensus 177 lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D-~~I~V~a~~~~~ 231 (312)
T 3aez_A 177 YSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFD-FSLYVDARIEDI 231 (312)
T ss_dssp EETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCS-EEEEEEECHHHH
T ss_pred CChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcC-cEEEEECCHHHH
Confidence 99999999999999999999999999999998521 11222 24 357778877654
No 76
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.81 E-value=1e-21 Score=220.50 Aligned_cols=167 Identities=13% Similarity=0.073 Sum_probs=124.9
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc----------cc--cccEEEEecCCC-CC-c
Q 001329 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DL--NKEIFYVPQRPY-TA-V 526 (1099)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~----------~~--r~~i~~v~Q~p~-l~-~ 526 (1099)
++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.+. .+ +..++|++|++. .+ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 3567889999999999999999999999999999999999999998761 12 347999999987 54 4
Q ss_pred ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC--EEEEeC
Q 001329 527 GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK--FAILDE 604 (1099)
Q Consensus 527 ~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~--iliLDE 604 (1099)
.|++||+.++.... .+ ..+++.+|+.+..++++ .+|| |||++||||++.+|+ +++||
T Consensus 170 ~~v~e~l~~~~~~~-----~d----~~lldt~gl~~~~~~~~--------~eLS---kqr~~iaral~~~P~e~lLvLD- 228 (302)
T 3b9q_A 170 TVLSKAVKRGKEEG-----YD----VVLCDTSGRLHTNYSLM--------EELI---ACKKAVGKIVSGAPNEILLVLD- 228 (302)
T ss_dssp HHHHHHHHHHHHTT-----CS----EEEECCCCCSSCCHHHH--------HHHH---HHHHHHHTTSTTCCSEEEEEEE-
T ss_pred HHHHHHHHHHHHcC-----Cc----chHHhcCCCCcchhHHH--------HHHH---HHHHHHHHhhccCCCeeEEEEe-
Confidence 69999998653211 00 12345566655444444 3799 999999999999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCcEEEEEcc---------ChhHHH-hcCEEEEEeCC
Q 001329 605 CTSAVTTDMEERFCAKVRAMGTSCITISH---------RPALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 605 pTSaLD~~~~~~l~~~l~~~g~TvI~ItH---------~l~~i~-~~D~Il~l~~~ 650 (1099)
||++||+..+. .+.-++.|.|+|++|| .++.+. ..+.|.++..+
T Consensus 229 ptsglD~~~~~--~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~G 282 (302)
T 3b9q_A 229 GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVG 282 (302)
T ss_dssp GGGGGGGHHHH--HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECS
T ss_pred CCCCcCHHHHH--HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCC
Confidence 99999988653 2333356999999999 333333 34677777543
No 77
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=2.9e-23 Score=220.12 Aligned_cols=171 Identities=11% Similarity=0.058 Sum_probs=109.6
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--ccccccEEEEecCCCCCc-ccHHHHhc
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDLNKEIFYVPQRPYTAV-GTLRDQLI 534 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~~~r~~i~~v~Q~p~l~~-~Ti~eni~ 534 (1099)
.++++| .+|++||+++|+||||||||||+|+|+|+++...+.+.+.+.+ ...++.++|+||++..+. .|+.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 467888 7999999999999999999999999999996433322222211 123467999999986554 36666654
Q ss_pred cCCCCCC--cCCcCCHH----HHHHH------HHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEE
Q 001329 535 YPLTSDQ--EVEPLTHG----GMVEL------LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602 (1099)
Q Consensus 535 ~~~~~~~--~~~~~~~~----~i~~~------l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliL 602 (1099)
+...... .......+ .+.+. ++.+|+.++.+++|. +|| +|+.+|++++|
T Consensus 87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 87 EWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE--------AVT-----------VFLAPPSWQDL 147 (207)
T ss_dssp EEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT--------SEE-----------EEEECSCHHHH
T ss_pred eehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC--------cEE-----------EEEECCCHHHH
Confidence 3211110 00001122 23333 445566666777763 677 89999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001329 603 DECTSAV----TTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1099)
Q Consensus 603 DEpTSaL----D~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1099)
||||+++ |+..++++.+.+++ .|.|+|+||||++.+. .||+|++|..
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 9999998 67788887766543 4899999999999875 6899998854
No 78
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.81 E-value=1.4e-21 Score=216.26 Aligned_cols=146 Identities=13% Similarity=0.087 Sum_probs=98.3
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC---ccccccEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCH
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTH 548 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---~~~r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~ 548 (1099)
.++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...++.+++++|++.++. .|+.||+.++..... ....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~---~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN---ENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC---TTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc---HHHH
Confidence 489999999999999999999999999999999865 234578999999997765 599999998764321 1223
Q ss_pred HHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEE
Q 001329 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSC 628 (1099)
Q Consensus 549 ~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~Tv 628 (1099)
+.+.+.++ .++.+.++ .+||||||||+++|||++. ++++||||++||+... ++++.+.+. .++
T Consensus 81 ~~i~~~~~----~~~~~~~~--------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~~~-~~v 143 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK--------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLSKV-VNI 143 (270)
T ss_dssp HHHHHHHH----HHHHHHHH--------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHHTT-SEE
T ss_pred HHHHHHHH----HHHHhhhH--------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHHhc-CcE
Confidence 34444444 44555544 2799999999999999886 9999999999999874 455555555 899
Q ss_pred EEEccChhHH
Q 001329 629 ITISHRPALV 638 (1099)
Q Consensus 629 I~ItH~l~~i 638 (1099)
|+|.|..+.+
T Consensus 144 I~Vi~K~D~l 153 (270)
T 3sop_A 144 IPVIAKADTM 153 (270)
T ss_dssp EEEETTGGGS
T ss_pred EEEEeccccC
Confidence 9998887654
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.79 E-value=8.2e-21 Score=217.42 Aligned_cols=165 Identities=13% Similarity=0.088 Sum_probs=125.2
Q ss_pred eeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc-------c---c--cccEEEEecCCC-CC-cc
Q 001329 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------D---L--NKEIFYVPQRPY-TA-VG 527 (1099)
Q Consensus 462 ~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-------~---~--r~~i~~v~Q~p~-l~-~~ 527 (1099)
+++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.+. + + +..|+|++|++. .+ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 457889999999999999999999999999999999999999998761 1 1 347999999986 44 46
Q ss_pred cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC--EEEEeCC
Q 001329 528 TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK--FAILDEC 605 (1099)
Q Consensus 528 Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~--iliLDEp 605 (1099)
|++||+.++.... .+ ..+++.+|+.+..++++ .+|| |||++||||++.+|+ +|+|| |
T Consensus 228 tv~e~l~~~~~~~-----~d----~~lldt~Gl~~~~~~~~--------~eLS---kqr~~iaral~~~P~e~lLvLD-p 286 (359)
T 2og2_A 228 VLSKAVKRGKEEG-----YD----VVLCDTSGRLHTNYSLM--------EELI---ACKKAVGKIVSGAPNEILLVLD-G 286 (359)
T ss_dssp HHHHHHHHHHHTT-----CS----EEEEECCCCSSCCHHHH--------HHHH---HHHHHHHHHSTTCCSEEEEEEE-G
T ss_pred hHHHHHHHHHhCC-----CH----HHHHHhcCCChhhhhHH--------HHHH---HHHHHHHHHHhcCCCceEEEEc-C
Confidence 9999998753211 00 12345566655444444 3799 999999999999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHhcCcEEEEEccC---------hhHHH-hcCEEEEEeC
Q 001329 606 TSAVTTDMEERFCAKVRAMGTSCITISHR---------PALVA-FHDVVLSLDG 649 (1099)
Q Consensus 606 TSaLD~~~~~~l~~~l~~~g~TvI~ItH~---------l~~i~-~~D~Il~l~~ 649 (1099)
|++||+..+. .+..++.|.|+|++||. ++... ..+.|..+..
T Consensus 287 ttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~ 338 (359)
T 2og2_A 287 NTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGV 338 (359)
T ss_dssp GGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred CCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeC
Confidence 9999988664 23333469999999993 33333 3467777754
No 80
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.78 E-value=3.2e-21 Score=226.77 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=133.6
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--------------
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------------- 508 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------------- 508 (1099)
+.++++++++.|..+.++|+++ |+|.+||+++|+||||||||||+++|+|+++|++|.|.++|..
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4688999999997667899999 9999999999999999999999999999999999999999972
Q ss_pred ccccccEEEEecCCC--CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcC--ChhHHhcCCCCcccCCCCCcChHHH
Q 001329 509 SDLNKEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD--LEYLLDRYPPEKEINWGDELSLGEQ 584 (1099)
Q Consensus 509 ~~~r~~i~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~--l~~~~~~~p~~~~~~~g~~LSGGqr 584 (1099)
..+++.++|++|++. ....|+.+|+.+... ....-+ ...+++. ...||+||
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae---------------~~~~~~~~v~~~ld~---------l~~lS~g~- 263 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAE---------------DFRDRGQHVLLIMDS---------LTRYAMAQ- 263 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHH---------------HHHTTTCEEEEEEEC---------HHHHHHHH-
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHH---------------HHHhCCCCHHHHHHh---------HHHHHHHH-
Confidence 124578999999633 334588888775321 111000 1111111 23699999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-------Cc-----EEEEEccChhHHHhcCEEEEEeC
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM-------GT-----SCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~-------g~-----TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
||++|| +.+|++ |+|||+.+...+.+++++. |. |++++|||++ ...+|+++++.+
T Consensus 264 qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~d 330 (438)
T 2dpy_A 264 REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILD 330 (438)
T ss_dssp HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSS
T ss_pred HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeC
Confidence 999999 899998 9999999999999988652 43 9999999998 556677776654
No 81
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.75 E-value=4.2e-18 Score=194.24 Aligned_cols=74 Identities=26% Similarity=0.257 Sum_probs=66.5
Q ss_pred CCcChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEE
Q 001329 577 DELSLGEQQ------RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSL 647 (1099)
Q Consensus 577 ~~LSGGqrQ------RlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l 647 (1099)
.+||||||| |+++|||++.+|+++||||||++||+.....+.+.+++ .|.|+|+|||+.+....||+++++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l 326 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 326 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEE
Confidence 579999999 67888999999999999999999999999999888764 478999999998888889999999
Q ss_pred eCC
Q 001329 648 DGE 650 (1099)
Q Consensus 648 ~~~ 650 (1099)
+.+
T Consensus 327 ~~~ 329 (339)
T 3qkt_A 327 SLE 329 (339)
T ss_dssp EEE
T ss_pred Eec
Confidence 753
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.74 E-value=2.1e-20 Score=225.43 Aligned_cols=168 Identities=15% Similarity=0.155 Sum_probs=123.5
Q ss_pred EeeEEEcCCCCceeeeeeE-EEeCCCEEEEEcCCCCchhHHHHH--hcCcCcCCccEEEeCCCCc-----cccccEEEEe
Q 001329 448 SGVKVVTPTGNVLVENLTL-KVEPGSNLLITGPNGSGKSSLFRV--LGGLWPLVSGHIAKPGVGS-----DLNKEIFYVP 519 (1099)
Q Consensus 448 ~~v~~~y~~~~~vL~~vsl-~i~~Ge~vaIvG~sGsGKSTLl~l--L~Gl~~p~~G~I~i~g~~~-----~~r~~i~~v~ 519 (1099)
+++.. ++++.++|+|+|+ .|++||+++|+||||||||||+++ ++|+.+|++|.|.++|.+. ..++.+||++
T Consensus 16 ~~~~~-~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~ 94 (525)
T 1tf7_A 16 QAIAK-MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDL 94 (525)
T ss_dssp SSCCE-ECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCH
T ss_pred ccccc-ccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCh
Confidence 34433 4567789999999 999999999999999999999999 7899999999999999761 2346799999
Q ss_pred cCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 520 QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 520 Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
|++... +|+.+..... .. +..++++.+++.++.++.+. +||||| |++
T Consensus 95 q~~~~~-----~~l~~~~~~~--~~-----~~~~~l~~~~l~~~~~~~~~--------~LS~g~-------------~~~ 141 (525)
T 1tf7_A 95 AKLVDE-----GKLFILDASP--DP-----EGQEVVGGFDLSALIERINY--------AIQKYR-------------ARR 141 (525)
T ss_dssp HHHHHT-----TSEEEEECCC--CS-----SCCSCCSSHHHHHHHHHHHH--------HHHHHT-------------CSE
T ss_pred HHhhcc-----CcEEEEecCc--cc-----chhhhhcccCHHHHHHHHHH--------HHHHcC-------------CCE
Confidence 986421 1222211000 00 01123445555566666553 688875 779
Q ss_pred EEEeCCCCC-----CCHHHHHHHHHHHH---hcCcEEEEEccChhHH---------Hh-cCEEEEEeC
Q 001329 600 AILDECTSA-----VTTDMEERFCAKVR---AMGTSCITISHRPALV---------AF-HDVVLSLDG 649 (1099)
Q Consensus 600 liLDEpTSa-----LD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i---------~~-~D~Il~l~~ 649 (1099)
+++||||+. ||+...+.+.++++ +.|+|+|+|||+++.+ .. ||+|++|++
T Consensus 142 lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 142 VSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp EEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred EEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 999999985 58888888777654 4599999999999874 44 999999986
No 83
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.72 E-value=4.8e-18 Score=217.50 Aligned_cols=160 Identities=17% Similarity=0.193 Sum_probs=115.0
Q ss_pred CCcEEEEe-----eEEEcCCCCceeeeeeEEEeC-------CCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc
Q 001329 442 ANYIEFSG-----VKVVTPTGNVLVENLTLKVEP-------GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS 509 (1099)
Q Consensus 442 ~~~I~~~~-----v~~~y~~~~~vL~~vsl~i~~-------Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~ 509 (1099)
.+.|+++| |++.|+++..+++|++|++++ |++++|+||||||||||+|.+ |+..+
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 35699999 998886567899999999987 999999999999999999999 99874
Q ss_pred cccccEE-EEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001329 510 DLNKEIF-YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1099)
Q Consensus 510 ~~r~~i~-~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1099)
..++| ||||++. ..|+.|+|.. ++|+.+.+.... +.+|+++++ ++
T Consensus 815 --~aqiG~~Vpq~~~--~l~v~d~I~~---------------------rig~~d~~~~~~--------stf~~em~~-~a 860 (1022)
T 2o8b_B 815 --MAQMGCYVPAEVC--RLTPIDRVFT---------------------RLGASDRIMSGE--------STFFVELSE-TA 860 (1022)
T ss_dssp --HHTTTCCEESSEE--EECCCSBEEE---------------------ECC-----------------CHHHHHHHH-HH
T ss_pred --HhheeEEeccCcC--CCCHHHHHHH---------------------HcCCHHHHhhch--------hhhHHHHHH-HH
Confidence 12466 9999873 3455555532 122222222111 368887775 99
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHH-HHH---HHHHHhc-CcEEEEEccChhHHH-hcCEEEEEe
Q 001329 589 MARLFYHKPKFAILDECTSAVTTDME-ERF---CAKVRAM-GTSCITISHRPALVA-FHDVVLSLD 648 (1099)
Q Consensus 589 IARAL~~~P~iliLDEpTSaLD~~~~-~~l---~~~l~~~-g~TvI~ItH~l~~i~-~~D~Il~l~ 648 (1099)
+|++++.+|+++||||||+|+|+... ..+ ++.+.+. |+++|++||+.+++. .+|++.+++
T Consensus 861 ~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~ 926 (1022)
T 2o8b_B 861 SILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRL 926 (1022)
T ss_dssp HHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE
T ss_pred HHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeec
Confidence 99999999999999999999998763 333 3444444 999999999999886 478887764
No 84
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.72 E-value=5.7e-19 Score=192.04 Aligned_cols=155 Identities=12% Similarity=0.059 Sum_probs=101.5
Q ss_pred CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcc
Q 001329 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIY 535 (1099)
Q Consensus 456 ~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~ 535 (1099)
+++++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.+++++|+++....|+.+++.+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----~~~~~i~~v~~d~~~~~l~~~~~~~~ 81 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----QRQRKVVILSQDRFYKVLTAEQKAKA 81 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----GGGCSEEEEEGGGGBCCCCHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----ccCCceEEEeCCcCccccCHhHhhhh
Confidence 3467999999999999999999999999999999999976 555444 24678999999975555689988765
Q ss_pred CCCCCC--cCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 001329 536 PLTSDQ--EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613 (1099)
Q Consensus 536 ~~~~~~--~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~ 613 (1099)
...... .....+.+++.+.++.+ .+.....+ .+||+||+||+++ ++++.+|+++|+|||....|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~--------~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l 150 (245)
T 2jeo_A 82 LKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEV--------PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEI 150 (245)
T ss_dssp HTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEE--------CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHH
T ss_pred hccCCCCCCcccccHHHHHHHHHHH--HCCCCeec--------ccccccccCccCc-eEEecCCCEEEEeCccccccHHH
Confidence 332111 11123345555665542 11111111 3799999999988 68889999999999998887642
Q ss_pred HHHHHHHHHhcCcEEEEEccChh
Q 001329 614 EERFCAKVRAMGTSCITISHRPA 636 (1099)
Q Consensus 614 ~~~l~~~l~~~g~TvI~ItH~l~ 636 (1099)
. +..+.|++++||+..
T Consensus 151 ----~---~~~~~~i~v~th~~~ 166 (245)
T 2jeo_A 151 ----R---DMFHLRLFVDTDSDV 166 (245)
T ss_dssp ----H---TTCSEEEEEECCHHH
T ss_pred ----H---HhcCeEEEEECCHHH
Confidence 1 124889999999733
No 85
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.71 E-value=1.1e-18 Score=191.97 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=107.3
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCC-ccEEEeCCCCccccccEEEEecCCC
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-SGHIAKPGVGSDLNKEIFYVPQRPY 523 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-~G~I~i~g~~~~~r~~i~~v~Q~p~ 523 (1099)
++++++++ + ++|+|+| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+ +.|++|++.
T Consensus 6 ~~l~~l~~--~---~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~------i~~~~~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGL--P---DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP------IEYVFKHKK 72 (261)
T ss_dssp CCGGGSSC--C---THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS------CCSCCCCSS
T ss_pred CChHHCCC--H---HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc------ceeecCCcc
Confidence 45566654 2 5899999 9999999999999999999999999999998 9999998753 344444431
Q ss_pred CCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEe
Q 001329 524 TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILD 603 (1099)
Q Consensus 524 l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLD 603 (1099)
.+ .. . +.++++. ..| |++|||||..+|+++++|
T Consensus 73 ~~---------v~--------q----------~~~gl~~--------------~~l------~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 73 SI---------VN--------Q----------REVGEDT--------------KSF------ADALRAALREDPDVIFVG 105 (261)
T ss_dssp SE---------EE--------E----------EEBTTTB--------------SCH------HHHHHHHHHHCCSEEEES
T ss_pred ee---------ee--------H----------HHhCCCH--------------HHH------HHHHHHHHhhCCCEEEeC
Confidence 00 00 0 0122110 123 899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEeC
Q 001329 604 ECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 604 EpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
||| |+++...+.+.. +.|.++++++|+.+....+|++++|..
T Consensus 106 Ep~---D~~~~~~~l~~~-~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 106 EMR---DLETVETALRAA-ETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp CCC---SHHHHHHHHHHH-HTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred CCC---CHHHHHHHHHHH-ccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 999 998877766654 459999999999997778898887753
No 86
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.71 E-value=2.2e-18 Score=207.81 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=113.7
Q ss_pred eEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCC
Q 001329 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544 (1099)
Q Consensus 465 sl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~ 544 (1099)
+..+++|++++|+||||||||||++.++|+.+|. |+ +-+.+++|++. .++.++...-
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------~vi~~~~ee~~---~~l~~~~~~~-------- 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------RAILFAYEESR---AQLLRNAYSW-------- 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------CEEEEESSSCH---HHHHHHHHTT--------
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------CEEEEEEeCCH---HHHHHHHHHc--------
Confidence 4589999999999999999999999999999875 43 12567788762 2455544210
Q ss_pred cCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----HHHHHHH
Q 001329 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD-----MEERFCA 619 (1099)
Q Consensus 545 ~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~-----~~~~l~~ 619 (1099)
..+.+ + +...|+.++.+..| .+|||||+||+++||++..+|+++|+| ||++||.. ..+.+.+
T Consensus 332 g~~~~---~-~~~~g~~~~~~~~p--------~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ 398 (525)
T 1tf7_A 332 GMDFE---E-MERQNLLKIVCAYP--------ESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG 398 (525)
T ss_dssp SCCHH---H-HHHTTSEEECCCCG--------GGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH
T ss_pred CCCHH---H-HHhCCCEEEEEecc--------ccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH
Confidence 01211 2 23455555555555 379999999999999999999999999 99999998 7777665
Q ss_pred HH---HhcCcEEEEEccCh----------hHHH-hcCEEEEEeC
Q 001329 620 KV---RAMGTSCITISHRP----------ALVA-FHDVVLSLDG 649 (1099)
Q Consensus 620 ~l---~~~g~TvI~ItH~l----------~~i~-~~D~Il~l~~ 649 (1099)
++ ++.|+|+|+|+|+. ..+. .||+|++|+.
T Consensus 399 ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ 442 (525)
T 1tf7_A 399 VTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 442 (525)
T ss_dssp HHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEE
Confidence 54 45699999999998 5554 5899999975
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.70 E-value=2.5e-18 Score=191.84 Aligned_cols=176 Identities=18% Similarity=0.220 Sum_probs=108.4
Q ss_pred CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCcc-EEEeCCCC---ccccccEEEEecCCCCCcccHHHH
Q 001329 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG-HIAKPGVG---SDLNKEIFYVPQRPYTAVGTLRDQ 532 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G-~I~i~g~~---~~~r~~i~~v~Q~p~l~~~Ti~en 532 (1099)
+.++|+++++.+++|++++|+||||||||||++.|+|...|++| .|.+.+.+ .++++++..+.|+..+ +..++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~---~~~~~ 97 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL---RQSDS 97 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG---GGCHH
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh---hhccc
Confidence 44689999999999999999999999999999999999999888 66543322 1222333333333211 11122
Q ss_pred hccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHH-HHHHHHHHHHccCCCEEEEeCCCC---C
Q 001329 533 LIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGE-QQRLGMARLFYHKPKFAILDECTS---A 608 (1099)
Q Consensus 533 i~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGq-rQRlaIARAL~~~P~iliLDEpTS---a 608 (1099)
+..+... .....+.+.++++..++. +...| ..+|.+| +||+. |+++.++|+++|+||||+ +
T Consensus 98 l~~~~~~----~~~~~~~~~~~l~~~~l~--i~~~~--------~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~ 162 (296)
T 1cr0_A 98 LKREIIE----NGKFDQWFDELFGNDTFH--LYDSF--------AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSA 162 (296)
T ss_dssp HHHHHHH----HTHHHHHHHHHHSSSCEE--EECCC--------CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----
T ss_pred cccCCCC----HHHHHHHHHHHhccCCEE--EECCC--------CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCC
Confidence 2211000 000011112222211221 11111 2589998 67777 999999999999999999 4
Q ss_pred ---CCH-HHHHHHHHHH----HhcCcEEEEEccCh--h--------------------HH-HhcCEEEEEeCC
Q 001329 609 ---VTT-DMEERFCAKV----RAMGTSCITISHRP--A--------------------LV-AFHDVVLSLDGE 650 (1099)
Q Consensus 609 ---LD~-~~~~~l~~~l----~~~g~TvI~ItH~l--~--------------------~i-~~~D~Il~l~~~ 650 (1099)
+|. .....+.+.+ ++.|+|+|++||+. + .+ ..||+|++|+.+
T Consensus 163 ~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 344 4445555544 34599999999995 3 33 469999999764
No 88
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.68 E-value=5e-17 Score=202.45 Aligned_cols=145 Identities=18% Similarity=0.183 Sum_probs=111.1
Q ss_pred CCcEEEEeeEEEcC----CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-CCccEEEeCCCCccccccEE
Q 001329 442 ANYIEFSGVKVVTP----TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-LVSGHIAKPGVGSDLNKEIF 516 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~----~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-p~~G~I~i~g~~~~~r~~i~ 516 (1099)
.+.|++++.. +| +++.+++|+||+ |++++|+||||||||||+|+|+|+.. ++.|.+. +. .+..++
T Consensus 548 ~~~i~i~~~r--HP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-pa----~~~~i~ 617 (765)
T 1ewq_A 548 GDRLQIRAGR--HPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-PA----EEAHLP 617 (765)
T ss_dssp SSSEEEEEEC--CTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-SS----SEEEEC
T ss_pred CCcEEEEEeE--CceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-eh----hcccee
Confidence 3468888873 34 235799999999 99999999999999999999999874 6778753 21 134567
Q ss_pred EEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH--
Q 001329 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF-- 593 (1099)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL-- 593 (1099)
+++| ++. .++.||+. ..+|+|++|++.+|+++
T Consensus 618 ~v~~---i~~~~~~~d~l~------------------------------------------~g~S~~~~e~~~la~il~~ 652 (765)
T 1ewq_A 618 LFDG---IYTRIGASDDLA------------------------------------------GGKSTFMVEMEEVALILKE 652 (765)
T ss_dssp CCSE---EEEECCC------------------------------------------------CCSHHHHHHHHHHHHHHH
T ss_pred eHHH---hhccCCHHHHHH------------------------------------------hcccHHHHHHHHHHHHHHh
Confidence 6665 111 12222211 14799999999999999
Q ss_pred ccCCCEEEEeCC---CCCCCHHHH-HHHHHHHHhcCcEEEEEccChhHHHhc
Q 001329 594 YHKPKFAILDEC---TSAVTTDME-ERFCAKVRAMGTSCITISHRPALVAFH 641 (1099)
Q Consensus 594 ~~~P~iliLDEp---TSaLD~~~~-~~l~~~l~~~g~TvI~ItH~l~~i~~~ 641 (1099)
+.+|+++||||| |++||.... ..+.+.+.+.|.|+|++||+.+....+
T Consensus 653 a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 653 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTALG 704 (765)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTCC
T ss_pred ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 999999999999 999999876 468888877899999999999887654
No 89
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.68 E-value=2e-18 Score=197.34 Aligned_cols=173 Identities=14% Similarity=0.099 Sum_probs=126.0
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-cc-----------
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SD----------- 510 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~----------- 510 (1099)
+.++.+++++.|..+..+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|.+ .+
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 4688899999997677899999 9999999999999999999999999999999999999998864 11
Q ss_pred -ccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcc--cCCCCCcChHHHHHH
Q 001329 511 -LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE--INWGDELSLGEQQRL 587 (1099)
Q Consensus 511 -~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~--~~~g~~LSGGqrQRl 587 (1099)
+++.+.+++|.+.- ..+++...+..+.+.++......+.. .+...+||+|| ||+
T Consensus 123 ~~~~~v~~~~~~~~~----------------------~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v 179 (347)
T 2obl_A 123 TLSKCVLVVTTSDRP----------------------ALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDV 179 (347)
T ss_dssp HHTTEEEEEECTTSC----------------------HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHH
T ss_pred hhhceEEEEECCCCC----------------------HHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHH
Confidence 22345666654311 11223333333333332211100000 01124799999 999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-----Cc-----EEEEEccChhHHHhcCEEEEEeC
Q 001329 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM-----GT-----SCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 588 aIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~-----g~-----TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
++| +.+|++ |+|||+.....+.+++++. |. |++++|||++ ...||+++++.+
T Consensus 180 ~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~d 241 (347)
T 2obl_A 180 GLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILD 241 (347)
T ss_dssp HHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCS
T ss_pred HHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeC
Confidence 999 689988 9999999999999988652 66 8999999998 556788887764
No 90
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.68 E-value=1.1e-17 Score=178.19 Aligned_cols=144 Identities=15% Similarity=0.081 Sum_probs=93.2
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-------CccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCC
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-------VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS 539 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-------~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~ 539 (1099)
.+++||+++|+||||||||||+++|+|++.+ ..|.+.+++.+....+++++++|+..++..|+.||+.+...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~- 99 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA- 99 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEEC-
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEec-
Confidence 6999999999999999999999999996655 33466666643111234556666665555566666554321
Q ss_pred CCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChH-HHHHHHHHHHHc-------cCCCEEEEeCCCCCCCH
Q 001329 540 DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG-EQQRLGMARLFY-------HKPKFAILDECTSAVTT 611 (1099)
Q Consensus 540 ~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGG-qrQRlaIARAL~-------~~P~iliLDEpTSaLD~ 611 (1099)
.+++ +++.+..+++++ .+|+++++||||+++|+
T Consensus 100 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~ 140 (231)
T 4a74_A 100 ---------------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 140 (231)
T ss_dssp ---------------------------------------CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHH
T ss_pred ---------------------------------------CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcc
Confidence 1222 222233344433 49999999999999998
Q ss_pred H-------HH-----HHHHH----HHHhcCcEEEEEccC----hhHHH-hcCEEEEEeCC
Q 001329 612 D-------ME-----ERFCA----KVRAMGTSCITISHR----PALVA-FHDVVLSLDGE 650 (1099)
Q Consensus 612 ~-------~~-----~~l~~----~l~~~g~TvI~ItH~----l~~i~-~~D~Il~l~~~ 650 (1099)
+ .+ .++.+ ..++.|+|+|++||. ...+. .+|++++++++
T Consensus 141 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 141 EYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 3 21 13333 334569999999994 44465 57999999864
No 91
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.67 E-value=7.3e-17 Score=184.95 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=64.7
Q ss_pred CcChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEe
Q 001329 578 ELSLGEQQRLGMARLFY---------HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648 (1099)
Q Consensus 578 ~LSGGqrQRlaIARAL~---------~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1099)
.||||||||++|||+|+ .+|+++|||||||+||+..+..+.+.+++.+.|+|++||. +. .+|++++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~--~~~~i~~l~ 341 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP--GAALTLRAQ 341 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT--TCSEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc--cCCEEEEEE
Confidence 69999999999999999 8999999999999999999999999998877899999994 44 889999998
Q ss_pred CC
Q 001329 649 GE 650 (1099)
Q Consensus 649 ~~ 650 (1099)
++
T Consensus 342 ~G 343 (359)
T 2o5v_A 342 AG 343 (359)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 92
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.66 E-value=5.1e-17 Score=204.92 Aligned_cols=146 Identities=22% Similarity=0.264 Sum_probs=106.8
Q ss_pred hHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCC-CcCCcC-------CHHHHHHHHH
Q 001329 485 SSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSD-QEVEPL-------THGGMVELLK 556 (1099)
Q Consensus 485 STLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~-~~~~~~-------~~~~i~~~l~ 556 (1099)
+|...+..+.+.|..|+|.++|.+ | .+ +...++.+++.+..... ...+.. ..++..+.+.
T Consensus 382 ~~C~~C~g~rl~~~~~~V~i~G~~------i---~~---~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~ 449 (916)
T 3pih_A 382 RTCSVCGGRRLNREALSVKINGLN------I---HE---FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLV 449 (916)
T ss_dssp EECTTTCSCCBCTTGGGEEETTEE------H---HH---HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHH
T ss_pred ccchhcccccCChHhcCcEECCcc------H---HH---hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHH
Confidence 445566777889999999999964 1 00 12235666655421110 000000 1133456788
Q ss_pred hcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEE
Q 001329 557 NVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK--FAILDECTSAVTTDMEERFCAKVRA---MGTSCIT 630 (1099)
Q Consensus 557 ~~~l~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~--iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ 630 (1099)
.+|+.++ .++.+ .+|||||||||+|||||+.+|+ ++||||||++||+....++.+.+++ .|.|+|+
T Consensus 450 ~vgL~~l~l~r~~--------~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 450 DVGLEYLTLSRSA--------TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp TTTCTTCBTTSBG--------GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HcCCccccccCCc--------ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 8888754 45544 3899999999999999999887 9999999999999999999888765 4899999
Q ss_pred EccChhHHHhcCEEEEEeCC
Q 001329 631 ISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 631 ItH~l~~i~~~D~Il~l~~~ 650 (1099)
||||++.+..||+|++|..+
T Consensus 522 VtHd~~~~~~aD~ii~lgpg 541 (916)
T 3pih_A 522 VEHDEEVIRNADHIIDIGPG 541 (916)
T ss_dssp ECCCHHHHHTCSEEEEEESS
T ss_pred EeCCHHHHHhCCEEEEEcCC
Confidence 99999999999999999643
No 93
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.66 E-value=3.1e-19 Score=188.84 Aligned_cols=141 Identities=14% Similarity=0.118 Sum_probs=111.3
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCc---ccHHHHhccCCCCCCcCC
Q 001329 468 VEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAV---GTLRDQLIYPLTSDQEVE 544 (1099)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~---~Ti~eni~~~~~~~~~~~ 544 (1099)
.++|++++|+||||||||||+++|+|+++| ++++++|+++++. .|+.+++.+.... ..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~---~~ 63 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------RVALLPMDHYYKDLGHLPLEERLRVNYDH---PD 63 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTS---GG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------CeEEEecCccccCcccccHHHhcCCCCCC---hh
Confidence 578999999999999999999999999875 4899999998763 4787776653211 11
Q ss_pred cCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHH----HHHHHHHHHHccCCCEEEEeCCCCC-------CCHHH
Q 001329 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGE----QQRLGMARLFYHKPKFAILDECTSA-------VTTDM 613 (1099)
Q Consensus 545 ~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGq----rQRlaIARAL~~~P~iliLDEpTSa-------LD~~~ 613 (1099)
....+++.++++.+++.+.++..+ .++|+|| +||+++||+++.+|+++++||||++ ||+..
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~~--------~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~ 135 (211)
T 3asz_A 64 AFDLALYLEHAQALLRGLPVEMPV--------YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADA 135 (211)
T ss_dssp GBCHHHHHHHHHHHHTTCCEEECC--------EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCH
T ss_pred hhhHHHHHHHHHHHHcCCCcCCCc--------ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCH
Confidence 235667888888888776665532 3688886 5789999999999999999999999 99988
Q ss_pred HHHHHHHHHh----cCcEEEEEccCh
Q 001329 614 EERFCAKVRA----MGTSCITISHRP 635 (1099)
Q Consensus 614 ~~~l~~~l~~----~g~TvI~ItH~l 635 (1099)
+.++.+.+++ .|.|++.++|+.
T Consensus 136 ~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 136 DERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 8887776643 489999999984
No 94
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.64 E-value=1.5e-18 Score=181.91 Aligned_cols=137 Identities=18% Similarity=0.148 Sum_probs=96.6
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcC
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~ 546 (1099)
|++++|+||||||||||+++|+|+++ ++| |.++|.+ ..++++++|++|+.. ++ ++++.....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~---g~-~~~l~~~~~-------- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS---GT-RGPLSRVGL-------- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETT---SC-EEEEEECCC--------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecc---cc-eehhhcccc--------
Confidence 78999999999999999999999999 999 9888853 345788999999862 21 122211000
Q ss_pred CHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHH
Q 001329 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL-GMAR---LFYHKPKFAILDE--CTSAVTTDMEERFCAK 620 (1099)
Q Consensus 547 ~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRl-aIAR---AL~~~P~iliLDE--pTSaLD~~~~~~l~~~ 620 (1099)
+..+ ..+.| .....+..+|+|||+++ ++++ |+..+|+++|+|| ||..+|....+.+.+.
T Consensus 67 ------------~~~~-~~~~~--~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 67 ------------EPPP-GKREC--RVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ------------CCCS-SSCCE--ESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ------------cCCc-ccccc--ccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 0000 00000 01112457999999998 5565 6899999999999 8999999999999998
Q ss_pred HHhcCcEEE---EEccChh
Q 001329 621 VRAMGTSCI---TISHRPA 636 (1099)
Q Consensus 621 l~~~g~TvI---~ItH~l~ 636 (1099)
+++...+++ .|+||.+
T Consensus 132 l~~~~~~ilgti~vsh~~~ 150 (189)
T 2i3b_A 132 LSTPGTIILGTIPVPKGKP 150 (189)
T ss_dssp HHCSSCCEEEECCCCCSSC
T ss_pred HhCCCcEEEEEeecCCCCc
Confidence 886533442 4459863
No 95
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.64 E-value=4.5e-16 Score=156.72 Aligned_cols=74 Identities=26% Similarity=0.259 Sum_probs=66.8
Q ss_pred CCcChHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEE
Q 001329 577 DELSLGEQQRLGMA------RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSL 647 (1099)
Q Consensus 577 ~~LSGGqrQRlaIA------RAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l 647 (1099)
.+||||||||++|| ||++.+|+++||||||++||+.+...+.+.+++ .|.|+|+|||+......||++++|
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~l 135 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 135 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEEEE
Confidence 58999999999876 999999999999999999999999999988765 378999999999777789999999
Q ss_pred eCC
Q 001329 648 DGE 650 (1099)
Q Consensus 648 ~~~ 650 (1099)
+++
T Consensus 136 ~~~ 138 (148)
T 1f2t_B 136 SLE 138 (148)
T ss_dssp EEE
T ss_pred EcC
Confidence 643
No 96
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.64 E-value=1.4e-17 Score=179.73 Aligned_cols=173 Identities=16% Similarity=0.080 Sum_probs=102.6
Q ss_pred EEEEeeEEEcCCCCceeeeeeE-EEeCCCEEEEEcCCCCchhHHHHHhc--CcCcCCccEEEeCCCC--c---cccccEE
Q 001329 445 IEFSGVKVVTPTGNVLVENLTL-KVEPGSNLLITGPNGSGKSSLFRVLG--GLWPLVSGHIAKPGVG--S---DLNKEIF 516 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl-~i~~Ge~vaIvG~sGsGKSTLl~lL~--Gl~~p~~G~I~i~g~~--~---~~r~~i~ 516 (1099)
+++++++..+ +.|+++-- .|++|++++|+||||||||||+++|+ |+.++.+|.+.+++.+ . ...+.++
T Consensus 7 ~~~~~i~tg~----~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 82 (251)
T 2ehv_A 7 QPVRRVKSGI----PGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFG 82 (251)
T ss_dssp -CCCEECCSC----TTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTT
T ss_pred cccceeecCC----HhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcC
Confidence 4445555433 33444411 79999999999999999999999999 7756777878777643 1 1224566
Q ss_pred EEecCCCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 517 YVPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 517 ~v~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
+++|++... ..++.++...... ....+.... . ...+.++.+....+..-..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~------------~---------~~~~~~~~~~~~~~~l~~~ 134 (251)
T 2ehv_A 83 WDFEKYEKEGKIAIVDGVSSVVG-------LPSEEKFVL------------E---------DRFNVDNFLRYIYRVVKAI 134 (251)
T ss_dssp CCHHHHHHTTSEEEEC-----------------------------------------------CCHHHHHHHHHHHHHHT
T ss_pred CChHHHhhcCCEEEEEccccccc-------cccccceec------------c---------CcccHHHHHHHHHHHHHhh
Confidence 666653211 0111111110000 000000000 0 1234455555555555568
Q ss_pred CCCEEEEeCCCCCCC-----HHHHHHHHHHH---HhcCcEEEEEccChhHH----------Hhc-CEEEEEeC
Q 001329 596 KPKFAILDECTSAVT-----TDMEERFCAKV---RAMGTSCITISHRPALV----------AFH-DVVLSLDG 649 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD-----~~~~~~l~~~l---~~~g~TvI~ItH~l~~i----------~~~-D~Il~l~~ 649 (1099)
+|+++++||||++|| +..++.+.+++ ++.|+|+|++||+++.+ ..| |+|++|+.
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 999999999999997 55555555544 45699999999998876 467 99999974
No 97
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.63 E-value=5.2e-16 Score=196.55 Aligned_cols=151 Identities=19% Similarity=0.192 Sum_probs=104.9
Q ss_pred CcEEEEeeEEEcC----CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHh--------cCcCcCCccEEEeCCCCcc
Q 001329 443 NYIEFSGVKVVTP----TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVL--------GGLWPLVSGHIAKPGVGSD 510 (1099)
Q Consensus 443 ~~I~~~~v~~~y~----~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL--------~Gl~~p~~G~I~i~g~~~~ 510 (1099)
+.+++++...-+- +++.+++|++|++++|++++|+|||||||||++|++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 4577777653221 235789999999999999999999999999999999 55444433221
Q ss_pred ccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001329 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1099)
Q Consensus 511 ~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1099)
++.+ + +++..+|+.+.+. ..+|+|++++..+|
T Consensus 702 ----~~~~------------d---------------------~i~~~ig~~d~l~-----------~~lStf~~e~~~~a 733 (934)
T 3thx_A 702 ----VSIV------------D---------------------CILARVGAGDSQL-----------KGVSTFMAEMLETA 733 (934)
T ss_dssp ----EECC------------S---------------------EEEEECC--------------------CHHHHHHHHHH
T ss_pred ----chHH------------H---------------------HHHHhcCchhhHH-----------HhHhhhHHHHHHHH
Confidence 1100 0 0111222222111 25788888888888
Q ss_pred HHH--ccCCCEEEEeCCCCCCCHHHHHHH----HHHHHh-cCcEEEEEccChhHHHhcCEEEEEeC
Q 001329 591 RLF--YHKPKFAILDECTSAVTTDMEERF----CAKVRA-MGTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 591 RAL--~~~P~iliLDEpTSaLD~~~~~~l----~~~l~~-~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
+++ +.+|+++||||||+|+|+.....+ .+.+.+ .|+|+|++||+.++...+|++..+++
T Consensus 734 ~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~n 799 (934)
T 3thx_A 734 SILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNN 799 (934)
T ss_dssp HHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEE
T ss_pred HHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEe
Confidence 888 999999999999999999877665 334444 59999999999998888888776664
No 98
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.62 E-value=8.1e-18 Score=188.88 Aligned_cols=160 Identities=11% Similarity=0.018 Sum_probs=82.5
Q ss_pred EeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCc-CcCCccEEEeCCCC--cc-ccccEEEEecCCC
Q 001329 448 SGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL-WPLVSGHIAKPGVG--SD-LNKEIFYVPQRPY 523 (1099)
Q Consensus 448 ~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl-~~p~~G~I~i~g~~--~~-~r~~i~~v~Q~p~ 523 (1099)
+||++.|. ++.++++++|+| +|+||||+|||||++.|.|. ..|++| |.++|.+ .. -.+.+++++|++.
T Consensus 2 ~~l~~~~~-~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~ 73 (301)
T 2qnr_A 2 SNLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERG 73 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---
T ss_pred CCCcceEC-CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCC
Confidence 36777774 567999999998 99999999999999999998 888999 7776643 11 1346899999875
Q ss_pred CC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEE
Q 001329 524 TA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602 (1099)
Q Consensus 524 l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliL 602 (1099)
.. ..|+.|+..++..... .++..++.+. +.+..++++ .++|||||||+.+|||++ ++++
T Consensus 74 ~~~~ltv~Dt~g~~~~~~~------~e~~~~l~~~--l~~~~~~~~--------~~~sgg~rqrv~~ara~~----ll~l 133 (301)
T 2qnr_A 74 VKLRLTVVDTPGYGDAINC------RDCFKTIISY--IDEQFERYL--------HDESGLNRRHIIDNRVHC----CFYF 133 (301)
T ss_dssp CCEEEEEEEEC-----------------CTTHHHH--HHHHHHHHH--------HHHTSSCCTTCCCCCCCE----EEEE
T ss_pred cccCcchhhhhhhhhhcCc------HHHHHHHHHH--HHHHHHHHH--------HHhCHHhhhhhhhhhhhh----eeee
Confidence 44 4577777766432110 0000111111 122233433 269999999999999985 9999
Q ss_pred eCCCCC-CCHHHHHHHHHHHHh-cCcEEEEEccChh
Q 001329 603 DECTSA-VTTDMEERFCAKVRA-MGTSCITISHRPA 636 (1099)
Q Consensus 603 DEpTSa-LD~~~~~~l~~~l~~-~g~TvI~ItH~l~ 636 (1099)
||||++ ||+... ++++.+.+ .+.++|+.+||+.
T Consensus 134 dePt~~~Ld~~~~-~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 134 ISPFGHGLKPLDV-AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ECSSSSSCCHHHH-HHHHHHTTTSCEEEEECCGGGS
T ss_pred ecCcccCCCHHHH-HHHHHHHhcCCEEEEEEeCCCC
Confidence 999985 999875 33333333 4789999999975
No 99
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.61 E-value=1.2e-15 Score=192.71 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=101.2
Q ss_pred CcEEEEeeEEEc-----C-CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-CccEEEeCCCCccccccE
Q 001329 443 NYIEFSGVKVVT-----P-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVGSDLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y-----~-~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~~~~r~~i 515 (1099)
+.+.+++...-. + +++.+++|+||++++|++++|+||||||||||+|+++++.-. ..|.
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~-------------- 704 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS-------------- 704 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc--------------
Confidence 457777654211 1 246799999999999999999999999999999999764321 1111
Q ss_pred EEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001329 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1099)
Q Consensus 516 ~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1099)
++|++... ..+.+ +++..+|+.+.+.+.+ +.+|+||+|+..|+++ +.
T Consensus 705 -~vpa~~~~--i~~~d---------------------~i~~~ig~~d~l~~~~--------stfs~em~~~~~il~~-a~ 751 (918)
T 3thx_B 705 -YVPAEEAT--IGIVD---------------------GIFTRMGAADNIYKGR--------STFMEELTDTAEIIRK-AT 751 (918)
T ss_dssp -CBSSSEEE--EECCS---------------------EEEEEC------------------CCHHHHHHHHHHHHHH-CC
T ss_pred -cccchhhh--hhHHH---------------------HHHHhCChHHHHHHhH--------HHhhHHHHHHHHHHHh-cc
Confidence 12221100 00000 0111223322222222 3799999999999999 89
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HH---HH-hcCcEEEEEccChhHHHhcCE
Q 001329 596 KPKFAILDECTSAVTTDMEERFC-AK---VR-AMGTSCITISHRPALVAFHDV 643 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~-~~---l~-~~g~TvI~ItH~l~~i~~~D~ 643 (1099)
+|+++||||||+|||+.....+. .. +. +.|+|+|++||+.++...+|+
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 99999999999999998776664 33 32 359999999999988765543
No 100
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.59 E-value=1.3e-16 Score=179.33 Aligned_cols=145 Identities=13% Similarity=0.110 Sum_probs=100.9
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc-------c---c--cccEEEEecCCCCCc-ccHHHHhccC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------D---L--NKEIFYVPQRPYTAV-GTLRDQLIYP 536 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-------~---~--r~~i~~v~Q~p~l~~-~Ti~eni~~~ 536 (1099)
+|++++|+||||||||||++.|+|+++|++|+|.+.|.+- + + +..+++++|++.+++ .++.+|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999998761 1 1 356999999987654 5888888754
Q ss_pred CCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHH
Q 001329 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK--FAILDECTSAVTTDME 614 (1099)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~--iliLDEpTSaLD~~~~ 614 (1099)
.... .+ ..+++.+|..+...+ .++..++||++||||+..+|+ ++.|| |+++.|...
T Consensus 181 ~~~~-----~d----~~llDt~G~~~~~~~-----------~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~- 238 (304)
T 1rj9_A 181 KARG-----YD----LLFVDTAGRLHTKHN-----------LMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLE- 238 (304)
T ss_dssp HHHT-----CS----EEEECCCCCCTTCHH-----------HHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHH-
T ss_pred HhCC-----CC----EEEecCCCCCCchHH-----------HHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHH-
Confidence 2110 00 001122232211111 245566999999999999999 66777 666654332
Q ss_pred HHHHHHHHhcCcEEEEEccChhH
Q 001329 615 ERFCAKVRAMGTSCITISHRPAL 637 (1099)
Q Consensus 615 ~~l~~~l~~~g~TvI~ItH~l~~ 637 (1099)
.+.+..++.|.|+|++||+...
T Consensus 239 -~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 239 -QAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp -HHHHHHHHHCCSEEEEECTTSS
T ss_pred -HHHHHHHHcCCcEEEEECCccc
Confidence 3333334469999999997543
No 101
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.57 E-value=3.4e-16 Score=179.18 Aligned_cols=144 Identities=17% Similarity=0.099 Sum_probs=104.4
Q ss_pred CCCceeeee-eEEEeCCCEEEEEcCCCCchhHHHHHhcCcC--cCCc----cE-EEeCCCCccccccEEEEecCCCCCcc
Q 001329 456 TGNVLVENL-TLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVS----GH-IAKPGVGSDLNKEIFYVPQRPYTAVG 527 (1099)
Q Consensus 456 ~~~~vL~~v-sl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~--~p~~----G~-I~i~g~~~~~r~~i~~v~Q~p~l~~~ 527 (1099)
.+.+.|+++ ++.+++|++++|+||||||||||++.+++.. +|++ |+ |++++.+...++++++++|++.++..
T Consensus 115 TG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 115 TGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD 194 (349)
T ss_dssp CSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHH
T ss_pred CCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHH
Confidence 345567776 6899999999999999999999999999998 7776 67 88888653224578888888877767
Q ss_pred cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc-------cCCCEE
Q 001329 528 TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY-------HKPKFA 600 (1099)
Q Consensus 528 Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~-------~~P~il 600 (1099)
++.+|+.+.... . |.+|+|++.++++++ .+|+++
T Consensus 195 ~v~~ni~~~~~~-------~--------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVARAF-------N--------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEEECC-------S--------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEEecC-------C--------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 888887664211 1 234455555555555 789999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHH----HhcCcEEEEEccChhHH
Q 001329 601 ILDECTSAVTTDM------------EERFCAKV----RAMGTSCITISHRPALV 638 (1099)
Q Consensus 601 iLDEpTSaLD~~~------------~~~l~~~l----~~~g~TvI~ItH~l~~i 638 (1099)
|+||||+++|++. ..++...+ ++.|+|+|+++|.....
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~ 289 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARP 289 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccc
Confidence 9999999999862 12333333 34599999999986643
No 102
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.57 E-value=5.3e-16 Score=177.84 Aligned_cols=143 Identities=20% Similarity=0.199 Sum_probs=100.3
Q ss_pred EeeEEEcC-CCCceeeeeeE-------EEeCCCEEEEEcCCCCchhHHHHHhcCcCcCC-ccEEEeCCCC--ccccccEE
Q 001329 448 SGVKVVTP-TGNVLVENLTL-------KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-SGHIAKPGVG--SDLNKEIF 516 (1099)
Q Consensus 448 ~~v~~~y~-~~~~vL~~vsl-------~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-~G~I~i~g~~--~~~r~~i~ 516 (1099)
.++++++. ...+.|+++.+ ...+|+.++|+||||||||||+++|+|+++|+ +|.|...+.+ ...+...+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~ 171 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC 171 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc
Confidence 34555543 23456677666 77899999999999999999999999999987 5666432211 11111222
Q ss_pred EEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001329 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1099)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1099)
+++|.+.. + ..++-.+ +|||||.++
T Consensus 172 ~v~q~~~~-------------------------------------------~--------~~~~~~~----~La~aL~~~ 196 (356)
T 3jvv_A 172 LVNQREVH-------------------------------------------R--------DTLGFSE----ALRSALRED 196 (356)
T ss_dssp EEEEEEBT-------------------------------------------T--------TBSCHHH----HHHHHTTSC
T ss_pred ceeeeeec-------------------------------------------c--------ccCCHHH----HHHHHhhhC
Confidence 33332110 0 0122222 999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEeC
Q 001329 597 PKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 597 P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
|+++++|||| |.++.+.+.++. +.|.|+|+++|+.+.+..+||++.|..
T Consensus 197 PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 197 PDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp CSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred cCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHHHHHHHHhhhcC
Confidence 9999999999 788776666654 459999999999999988999988743
No 103
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.57 E-value=4.4e-17 Score=171.21 Aligned_cols=166 Identities=16% Similarity=0.163 Sum_probs=92.4
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcC-----cCCccEEEeCCCCccccccEEEE
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW-----PLVSGHIAKPGVGSDLNKEIFYV 518 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~-----~p~~G~I~i~g~~~~~r~~i~~v 518 (1099)
.|+++|+++.|+ .+++++ |.+++|+.++|+|+||||||||++.|+|.. .|+.|++...+.- .+...+-++
T Consensus 3 ~l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~-~~~~~~~l~ 77 (210)
T 1pui_A 3 NLNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF-EVADGKRLV 77 (210)
T ss_dssp --------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE-EEETTEEEE
T ss_pred chhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE-EecCCEEEE
Confidence 478999999985 367888 899999999999999999999999999998 7888877542210 000011111
Q ss_pred ecCCCCC-----c---ccHHHHhcc----CCCCC------CcCCcCC--HHHHHHHHHhcCChhHH-hcCCCCcccCCCC
Q 001329 519 PQRPYTA-----V---GTLRDQLIY----PLTSD------QEVEPLT--HGGMVELLKNVDLEYLL-DRYPPEKEINWGD 577 (1099)
Q Consensus 519 ~Q~p~l~-----~---~Ti~eni~~----~~~~~------~~~~~~~--~~~i~~~l~~~~l~~~~-~~~p~~~~~~~g~ 577 (1099)
+.|-.. . ...+..+.+ ..... ....... ++++.+.++..++...+ ... ..
T Consensus 78 -Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK--------~D 148 (210)
T 1pui_A 78 -DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK--------AD 148 (210)
T ss_dssp -ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC--------GG
T ss_pred -ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEec--------cc
Confidence 111110 0 001111100 00000 0000111 23455555555544321 111 23
Q ss_pred CcChHHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 001329 578 ELSLGEQQR-LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623 (1099)
Q Consensus 578 ~LSGGqrQR-laIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~ 623 (1099)
.+|+||+|| +..+++++.+|+++++||||||+|.....++.+.+.+
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 149 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence 699999999 8999999999999999999999999999988887754
No 104
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=3.2e-16 Score=183.05 Aligned_cols=163 Identities=10% Similarity=0.033 Sum_probs=99.4
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCcc--EEEeCCCCccccccEEEEec
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIAKPGVGSDLNKEIFYVPQ 520 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G--~I~i~g~~~~~r~~i~~v~Q 520 (1099)
+.|.++||++.|+ ++++++|+||+| +|+||||||||||+++|+|+..|..| .+.+++.....+..+++++|
T Consensus 10 ~~l~~~~l~~~y~-~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q 82 (418)
T 2qag_C 10 GYVGFANLPNQVY-RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82 (418)
T ss_dssp -----CCCCCCTT-TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred CcEEEEecceeEC-CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence 4689999999985 568999999998 99999999999999999999876555 22121111111346899999
Q ss_pred CCCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC-
Q 001329 521 RPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK- 598 (1099)
Q Consensus 521 ~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~- 598 (1099)
++.++ ..||.||+.++..... ......+. ++++. .++.+++||++|||+++.+|+
T Consensus 83 ~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~---------~~i~~-----------~~~~~l~qr~~IaRal~~d~~~ 139 (418)
T 2qag_C 83 EGGVQLLLTIVDTPGFGDAVDN---SNCWQPVI---------DYIDS-----------KFEDYLNAESRVNRRQMPDNRV 139 (418)
T ss_dssp ----CEEEEEEECC--------------CHHHH---------HHHHH-----------HHHHHTTTSCC-CCCCCCCC-C
T ss_pred cCCcccceeeeechhhhhhccc---hhhHHHHH---------HHHHH-----------HHHHHHHHHHHHHHHhccCCCe
Confidence 87765 5688888877643210 00001111 12222 467788899999999999999
Q ss_pred --EEEEeCCC-CCCCHHHHHHHHHHHHhcCcEEEEEccChhH
Q 001329 599 --FAILDECT-SAVTTDMEERFCAKVRAMGTSCITISHRPAL 637 (1099)
Q Consensus 599 --iliLDEpT-SaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~ 637 (1099)
++++|||| ++||+... .+++.+.. +.++|+|.|..+.
T Consensus 140 ~vlL~ldePt~~~L~~~d~-~~lk~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 140 QCCLYFIAPSGHGLKPLDI-EFMKRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp CEEEEECCC-CCSCCHHHH-HHHHHHTT-TSEEEEEEESTTS
T ss_pred eEEEEEecCcccCCCHHHH-HHHHHHhc-cCcEEEEEEcccC
Confidence 99999999 69998775 34444443 7888888886654
No 105
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.53 E-value=9.8e-15 Score=183.74 Aligned_cols=116 Identities=21% Similarity=0.255 Sum_probs=88.4
Q ss_pred CCcccHHHHhccCCCCCCcCC----------cCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001329 524 TAVGTLRDQLIYPLTSDQEVE----------PLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1099)
Q Consensus 524 l~~~Ti~eni~~~~~~~~~~~----------~~~~~~i~~~l~~~~l~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1099)
+...||.|++.|.... .... ++..+++ +.++.+||.++ .++.+ .+|||||||||+||++
T Consensus 466 ~~~ltV~e~l~f~enl-~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~--------~tLSGGEkQRV~LA~a 535 (993)
T 2ygr_A 466 VCELSIADCADFLNAL-TLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAA--------ATLSGGEAQRIRLATQ 535 (993)
T ss_dssp SSHHHHHHHHHTTTTT-TSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBG--------GGCCHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhc-CCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCc--------ccCCHHHHHHHHHHHH
Confidence 3456999999884221 1110 0011222 34677787654 45443 4899999999999999
Q ss_pred HccC--CCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHHhcCEEEEEeC
Q 001329 593 FYHK--PKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 593 L~~~--P~iliLDEpTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
|..+ |+++||||||++||+...+++.+.++ +.|.|+|+|+||++++..||+|++|..
T Consensus 536 L~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp 597 (993)
T 2ygr_A 536 IGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGP 597 (993)
T ss_dssp HTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECS
T ss_pred HhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecC
Confidence 9998 59999999999999999999887654 469999999999999999999999964
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.52 E-value=1.5e-14 Score=153.67 Aligned_cols=161 Identities=13% Similarity=0.066 Sum_probs=104.2
Q ss_pred CCCceeeeeeE-EEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc---cccc---cEEEEecCCCCCccc
Q 001329 456 TGNVLVENLTL-KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNK---EIFYVPQRPYTAVGT 528 (1099)
Q Consensus 456 ~~~~vL~~vsl-~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~---~~r~---~i~~v~Q~p~l~~~T 528 (1099)
.+.+.|+++.. .+++|++++|+||||||||||++.|++...+.+|.+.+.+.+. ++.. .+++.+|+...
T Consensus 7 tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 7 TGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp CSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT----
T ss_pred CCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh----
Confidence 45678899988 8999999999999999999999999998887777776543220 0000 11111111000
Q ss_pred HHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC--EEEEeCCC
Q 001329 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK--FAILDECT 606 (1099)
Q Consensus 529 i~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~--iliLDEpT 606 (1099)
+++..- +... ...+ ..+ .....|.+|.++...+.+...+|+ ++|+||||
T Consensus 83 --~~~~~~-------~~~~--------~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 83 --KKLIII-------DALM--------KEKE-----DQW-------SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp --TTEEEE-------ECCC-----------------CTT-------BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred --CCEEEE-------eccc--------cccC-----cee-------eecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 000000 0000 0000 000 012459999999988888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHH----HhcCcEEEEEccCh--------hHH-HhcCEEEEEeC
Q 001329 607 SAV--TTDMEERFCAKV----RAMGTSCITISHRP--------ALV-AFHDVVLSLDG 649 (1099)
Q Consensus 607 SaL--D~~~~~~l~~~l----~~~g~TvI~ItH~l--------~~i-~~~D~Il~l~~ 649 (1099)
+.+ |+....++.+.+ ++.|+|+|+++|+. ..+ ..||+|++|+.
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 888 987666665554 34599999999998 334 46899999975
No 107
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.52 E-value=1.3e-16 Score=195.26 Aligned_cols=156 Identities=12% Similarity=0.132 Sum_probs=95.8
Q ss_pred cEEEEeeEEEcCCC-Cceeeee----------eEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-CccEEEeCCCC---
Q 001329 444 YIEFSGVKVVTPTG-NVLVENL----------TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVG--- 508 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~-~~vL~~v----------sl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~--- 508 (1099)
.++++|+++.|+.. +++++.+ +++++. ++|+||||||||||+++|+|+..| ++|.|.++|.+
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 57889999988542 3455444 366665 999999999999999999999988 89999999864
Q ss_pred ------ccccccEEEEecCCCCCc-ccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcCh
Q 001329 509 ------SDLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSL 581 (1099)
Q Consensus 509 ------~~~r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSG 581 (1099)
..+++.++|+||++.++. .|+++|+.++.. ... .. . ..+|
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~---------------~~~---~~------~--------~~~s- 133 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN---------------AIA---GE------G--------MGIS- 133 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH---------------HHH---CS------S--------SCCC-
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH---------------Hhc---CC------c--------cccc-
Confidence 246788999999987754 588888865311 100 00 0 0111
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHHh-----cCcEEEEEccChhH
Q 001329 582 GEQQRLGMARLFYHKPKFAILDEC------TSAVTTDMEERFCAKVRA-----MGTSCITISHRPAL 637 (1099)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEp------TSaLD~~~~~~l~~~l~~-----~g~TvI~ItH~l~~ 637 (1099)
++++.++.+...+|+++++||| |++||+..+.++.+++++ .+.++++++|+++.
T Consensus 134 --~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 134 --HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp --SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred --hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence 1222333334468999999999 999999999888887765 27889999999763
No 108
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.51 E-value=3e-14 Score=147.07 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=66.2
Q ss_pred CCCCcChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEe
Q 001329 575 WGDELSLGEQQRLGMARLFY----HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLD 648 (1099)
Q Consensus 575 ~g~~LSGGqrQRlaIARAL~----~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1099)
+...||||||||++|||+|+ ++|+++||||||++||+.++..+.+.+++ .+.++|+|||+..+...||+++.+.
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 34589999999999999997 45799999999999999999999998876 3679999999999999999999775
No 109
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.51 E-value=2.5e-14 Score=158.27 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=98.1
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhc-cCCCCCCcCCc
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI-YPLTSDQEVEP 545 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~-~~~~~~~~~~~ 545 (1099)
.+++|++++|+||||||||||++.+++... .|++. .|.+..-...+.|+..+... ..+.+.+. .+. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~-------~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELPTGPVIYLPAEDPP--TAIHHRLHALGA-------H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHT-------T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCCCccEEEEECCCCH--HHHHHHHHHHHh-------h
Confidence 478999999999999999999999998665 46653 34321113467777765421 12222221 111 1
Q ss_pred CCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHHH---HHHHHH
Q 001329 546 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS--AVTTDME---ERFCAK 620 (1099)
Q Consensus 546 ~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTS--aLD~~~~---~~l~~~ 620 (1099)
....+..++++.+++.+..++.+ ..||+||+|++ ++++.+|+++|+||||+ ++|.... .++++.
T Consensus 94 ~~~~~~~~~~~~l~l~~~~~~~~--------~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~ 162 (279)
T 1nlf_A 94 LSAEERQAVADGLLIQPLIGSLP--------NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGR 162 (279)
T ss_dssp SCHHHHHHHHHHEEECCCTTSCC--------CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHH
T ss_pred cChhhhhhccCceEEeecCCCCc--------ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHH
Confidence 23344556677777665444433 47999998865 68889999999999999 9997433 444443
Q ss_pred H----HhcCcEEEEEccChhHH
Q 001329 621 V----RAMGTSCITISHRPALV 638 (1099)
Q Consensus 621 l----~~~g~TvI~ItH~l~~i 638 (1099)
+ ++.|+|+|+++|+....
T Consensus 163 L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 163 MEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHcCCEEEEEecCCCcc
Confidence 3 45699999999987654
No 110
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.50 E-value=2.5e-14 Score=179.44 Aligned_cols=89 Identities=27% Similarity=0.430 Sum_probs=76.5
Q ss_pred HHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHH---hcCc
Q 001329 553 ELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP--KFAILDECTSAVTTDMEERFCAKVR---AMGT 626 (1099)
Q Consensus 553 ~~l~~~~l~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P--~iliLDEpTSaLD~~~~~~l~~~l~---~~g~ 626 (1099)
+.++.+||.++ .++.+ .+|||||||||+||++|..+| +++||||||++||+...+++.+.++ +.|.
T Consensus 486 ~~L~~vGL~~l~ldR~~--------~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~ 557 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSA--------GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGN 557 (972)
T ss_dssp HHHHHHTCTTSBSSSBG--------GGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTC
T ss_pred HHhhhCCCCccccCCcc--------ccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCC
Confidence 35778888754 45544 489999999999999999985 9999999999999999888887655 4699
Q ss_pred EEEEEccChhHHHhcCEEEEEeC
Q 001329 627 SCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 627 TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
|+|+|+||++++..||+|++|..
T Consensus 558 TVIvVeHdl~~i~~ADrIi~Lgp 580 (972)
T 2r6f_A 558 TLIVVEHDEDTMLAADYLIDIGP 580 (972)
T ss_dssp EEEEECCCHHHHHSCSEEEEECS
T ss_pred EEEEEecCHHHHHhCCEEEEeCC
Confidence 99999999999999999999964
No 111
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.49 E-value=8.6e-17 Score=185.18 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=106.9
Q ss_pred eeeeeeEEEeC--CCEEEEEcCCCCchhHHHHHhcCcCcCCc----cEEEeC----CCC-----ccccccEEEEecCCCC
Q 001329 460 LVENLTLKVEP--GSNLLITGPNGSGKSSLFRVLGGLWPLVS----GHIAKP----GVG-----SDLNKEIFYVPQRPYT 524 (1099)
Q Consensus 460 vL~~vsl~i~~--Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~----G~I~i~----g~~-----~~~r~~i~~v~Q~p~l 524 (1099)
..+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|.++ |.+ .++ ++|++++|++..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 998863 322 223 458888888777
Q ss_pred CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc-cCCCEEEEe
Q 001329 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY-HKPKFAILD 603 (1099)
Q Consensus 525 ~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~-~~P~iliLD 603 (1099)
+..|+.||+.+.... ..+.. + ..+|+|++||..+++++. .+|++++||
T Consensus 236 ~~~t~~~nl~~~~~~------~~~~~-----------------~--------~~~~~~~~~~~~i~~~~~~~~~~lllLd 284 (365)
T 1lw7_A 236 YAVRHSHKIAFIDTD------FITTQ-----------------A--------FCIQYEGKAHPFLDSMIKEYPFDVTILL 284 (365)
T ss_dssp HHHHHCSSEEEESSC------HHHHH-----------------H--------HHHHHHSCCCHHHHHHHHHSCCSEEEEE
T ss_pred HHHhccCCEEEEeCC------chHHH-----------------H--------HHHHHcCCCCHHHHHHHhhcCCCEEEEC
Confidence 777888888765321 00000 0 035667778888888775 689999999
Q ss_pred C---CC------CCCCHHHHHHHHHHHH----hcCcEEEEEccChhHHHhcCE
Q 001329 604 E---CT------SAVTTDMEERFCAKVR----AMGTSCITISHRPALVAFHDV 643 (1099)
Q Consensus 604 E---pT------SaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i~~~D~ 643 (1099)
| |+ +++|+..+..+.+.++ +.|.++|+++|.-...+.+|+
T Consensus 285 E~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 285 KNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp ECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred CCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 9 65 5788887777777663 348899999885333333433
No 112
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.48 E-value=4.8e-14 Score=176.62 Aligned_cols=88 Identities=27% Similarity=0.384 Sum_probs=74.5
Q ss_pred HHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHH---hcCcE
Q 001329 554 LLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP--KFAILDECTSAVTTDMEERFCAKVR---AMGTS 627 (1099)
Q Consensus 554 ~l~~~~l~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P--~iliLDEpTSaLD~~~~~~l~~~l~---~~g~T 627 (1099)
.++.+|+.++ .++.+ .+|||||||||+||++|..+| +++||||||++||+...+++.+.++ +.|.|
T Consensus 362 ~L~~vGL~~l~l~r~~--------~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~T 433 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRST--------PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNS 433 (842)
T ss_dssp HHHHTTCTTSBTTCBG--------GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred HHHhCCCCcCCccCCc--------CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCE
Confidence 4566676643 34433 489999999999999999999 5999999999999999998887654 56999
Q ss_pred EEEEccChhHHHhcCEEEEEeC
Q 001329 628 CITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 628 vI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
+|+|+||++.+..||+|++|..
T Consensus 434 VIvVeHdl~~l~~aD~ii~lgp 455 (842)
T 2vf7_A 434 LFVVEHDLDVIRRADWLVDVGP 455 (842)
T ss_dssp EEEECCCHHHHTTCSEEEEECS
T ss_pred EEEEcCCHHHHHhCCEEEEeCC
Confidence 9999999999999999999964
No 113
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.48 E-value=2.2e-15 Score=173.30 Aligned_cols=148 Identities=17% Similarity=0.147 Sum_probs=109.4
Q ss_pred EEEeeEEE---cCC-CCcee---------eeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----
Q 001329 446 EFSGVKVV---TPT-GNVLV---------ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---- 508 (1099)
Q Consensus 446 ~~~~v~~~---y~~-~~~vL---------~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---- 508 (1099)
+|++|+|. |++ +.++| +++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 78888887 753 23455 99999999999999999999999999999999999999999998854
Q ss_pred ccccccEEEEe-cCCCCCcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHH
Q 001329 509 SDLNKEIFYVP-QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1099)
Q Consensus 509 ~~~r~~i~~v~-Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1099)
...++.+++++ |++.. .++++..+|-
T Consensus 217 ~~~~~~v~~v~~q~~~~-----------------------------------------------------~~~~~~t~~~ 243 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAKE-----------------------------------------------------EENAPVTAAT 243 (361)
T ss_dssp TTCSSEEEEECC---------------------------------------------------------------CCHHH
T ss_pred cccCCEEEEeecCcccc-----------------------------------------------------ccccccCHHH
Confidence 12456788888 65421 0123335788
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 588 aIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
.|++++..+|+.+++|||+.+ +... +.+.+..-..|++..+|..+....+||+..+..+
T Consensus 244 ~i~~~l~~~pd~~l~~e~r~~---~~~~-~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 244 LLRSCLRMKPTRILLAELRGG---EAYD-FINVAASGHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp HHHHHTTSCCSEEEESCCCST---HHHH-HHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCEEEEcCchHH---HHHH-HHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 888899899999999999962 2222 3344444345788999998877778888877643
No 114
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.47 E-value=1.4e-16 Score=164.33 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=78.0
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcCcCC---ccEEEeCCCC-c--------ccc-ccEE----EEecCCCCCcccHHHHhc
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVG-S--------DLN-KEIF----YVPQRPYTAVGTLRDQLI 534 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g~~-~--------~~r-~~i~----~v~Q~p~l~~~Ti~eni~ 534 (1099)
++++|+|+||||||||+++|+|+++|+ .|+|.++|.+ . .+| ++++ +++|++++|. .
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i-------~ 75 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI-------R 75 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE-------E
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE-------e
Confidence 689999999999999999999999998 8999999865 1 344 3567 8899887651 1
Q ss_pred cCCCCCCcCCcCCHHHHHHHHHhcCChhHHhc-CCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001329 535 YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR-YPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1099)
Q Consensus 535 ~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1099)
.+ .. +. .+++.+++++ +| +.++..+..|||||+||++||||++.+|++
T Consensus 76 ~~----------~~-~~-----~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 76 RV----------SE-EE-----GNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp EC----------CH-HH-----HTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred cC----------Ch-hh-----hhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 00 11 11 6678888888 77 555544445999999999999999999987
No 115
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.45 E-value=8.1e-14 Score=174.63 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=96.5
Q ss_pred CcEEEEeeEEEcC------CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC-CccEEEeCCCCccccccE
Q 001329 443 NYIEFSGVKVVTP------TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVGSDLNKEI 515 (1099)
Q Consensus 443 ~~I~~~~v~~~y~------~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~~~~r~~i 515 (1099)
+.+++++.. .| +++.+++|+||+ ++|++++|+||||||||||+|+|+|+..+ ..|.. ++. -+..+
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa----~~~~i 647 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPA----QKVEI 647 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSS----SEEEE
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cch----hcccc
Confidence 457777653 22 245799999999 99999999999999999999999997532 23321 111 01234
Q ss_pred EEEecCCCCC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001329 516 FYVPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1099)
Q Consensus 516 ~~v~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1099)
++++| ++ ..++.||+.. .. +.+|+|+++ ++.+...+
T Consensus 648 ~~~~~---i~~~~~~~d~l~~-------------------------------~~--------stf~~e~~~-~~~il~~a 684 (800)
T 1wb9_A 648 GPIDR---IFTRVGAADDLAS-------------------------------GR--------STFMVEMTE-TANILHNA 684 (800)
T ss_dssp CCCCE---EEEEEC--------------------------------------------------CHHHHHH-HHHHHHHC
T ss_pred eeHHH---HHhhCCHHHHHHh-------------------------------hh--------hhhhHHHHH-HHHHHHhc
Confidence 44433 11 1122222110 00 246777765 44445568
Q ss_pred cCCCEEEEeCCCCCCCHHHHHH----HHHHHHh-cCcEEEEEccChhHHHhcCEE
Q 001329 595 HKPKFAILDECTSAVTTDMEER----FCAKVRA-MGTSCITISHRPALVAFHDVV 644 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~----l~~~l~~-~g~TvI~ItH~l~~i~~~D~I 644 (1099)
.+|+++||||||+|+|+..... +.+.+.+ .|.|+|++||+.+....+|++
T Consensus 685 ~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~ 739 (800)
T 1wb9_A 685 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 (800)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHS
T ss_pred cCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhh
Confidence 9999999999988888754433 4444555 499999999999887766654
No 116
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.45 E-value=3.8e-17 Score=172.13 Aligned_cols=153 Identities=18% Similarity=0.272 Sum_probs=99.5
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcCcCc-------------CCccEEEeCCCC------ccccccEEEEecCCCCCccc
Q 001329 468 VEPGSNLLITGPNGSGKSSLFRVLGGLWP-------------LVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGT 528 (1099)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-------------p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~T 528 (1099)
+++|+.++|+||||||||||+++|+|+++ |..|+ ++|.+ ..+++.+ +|+++++.++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 35899999999999999999999999986 77787 46654 1233333 6888888888
Q ss_pred HHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH-HHccCCCEEEEeCCCC
Q 001329 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR-LFYHKPKFAILDECTS 607 (1099)
Q Consensus 529 i~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR-AL~~~P~iliLDEpTS 607 (1099)
+.+|+ |+. +++++.++++.....-+ +-.+.+..... ++ ++ .|| +++.+|++++|||+|+
T Consensus 76 ~~~n~-~g~---------~~~~i~~~~~~~~~~~~-~~~~~g~~~~~-------~~-~~-~~~~~~l~~p~~~ilde~~~ 135 (198)
T 1lvg_A 76 FSGNL-YGT---------SKEAVRAVQAMNRICVL-DVDLQGVRSIK-------KT-DL-CPIYIFVQPPSLDVLEQRLR 135 (198)
T ss_dssp ETTEE-EEE---------EHHHHHHHHHTTCEEEE-ECCHHHHHHHT-------TS-SC-CCEEEEEECSCHHHHHHHHH
T ss_pred ecCcc-CCC---------CHHHHHHHHHcCCcEEE-ECCHHHHHHHH-------hc-CC-CcEEEEEeCCCHHHHHHHHH
Confidence 88887 542 35567777764321110 11011000000 00 22 567 7889999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEeC
Q 001329 608 AVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 608 aLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
++|.++++.+.+.+.+...- +.++| +. ..+|+|++.++
T Consensus 136 ~~d~~~e~~i~~~l~~~~~~-~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 136 LRNTETEESLAKRLAAARTD-MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHTCSCHHHHHHHHHHHHHH-TTGGG--ST-TTCSEEEECSS
T ss_pred hcCCCCHHHHHHHHHHHHHH-HHHhh--cc-CCceEEEECCC
Confidence 99999999988776542111 35567 33 67899988763
No 117
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.45 E-value=1.3e-14 Score=167.59 Aligned_cols=128 Identities=18% Similarity=0.160 Sum_probs=97.7
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCC-ccEEEeCCCC--ccccccEEEEecCCCCCcccHHHHhcc
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-SGHIAKPGVG--SDLNKEIFYVPQRPYTAVGTLRDQLIY 535 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-~G~I~i~g~~--~~~r~~i~~v~Q~p~l~~~Ti~eni~~ 535 (1099)
++|++++ +++|+.++|+||||||||||+++|+|+++|+ +|+|...+.+ ..++..+++|+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQRE------------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEE-------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeee-------------
Confidence 4677766 7999999999999999999999999999998 8999765543 22455677777741
Q ss_pred CCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001329 536 PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615 (1099)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~ 615 (1099)
+|++ + ..| +.+|+++|..+|+++++|||| |+++..
T Consensus 191 ----------------------~g~~------~--------~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~ 225 (372)
T 2ewv_A 191 ----------------------VGED------T--------KSF------ADALRAALREDPDVIFVGEMR---DLETVE 225 (372)
T ss_dssp ----------------------BTTT------B--------SCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH
T ss_pred ----------------------cCCC------H--------HHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH
Confidence 1110 1 134 469999999999999999999 777655
Q ss_pred HHHHHHHhcCcEEEEEccChhHHHhcCEEEEE
Q 001329 616 RFCAKVRAMGTSCITISHRPALVAFHDVVLSL 647 (1099)
Q Consensus 616 ~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l 647 (1099)
.+.+.. ..|.+++.++|+.+....+|+++.|
T Consensus 226 ~~l~~~-~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 226 TALRAA-ETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHH-TTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHH-hcCCEEEEEECcchHHHHHHHHHHh
Confidence 555543 4589999999998866667776655
No 118
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.44 E-value=2.5e-13 Score=143.48 Aligned_cols=150 Identities=19% Similarity=0.139 Sum_probs=97.0
Q ss_pred CCCceeeeeeE-EEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhc
Q 001329 456 TGNVLVENLTL-KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI 534 (1099)
Q Consensus 456 ~~~~vL~~vsl-~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~ 534 (1099)
.+.+.|+++.. .+++|++++|+||||||||||++.+++ ++..+ +.|+..+.......+.+
T Consensus 4 tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~--------------v~~i~~~~~~~~~~~~~--- 64 (220)
T 2cvh_A 4 TGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKK--------------VAYVDTEGGFSPERLVQ--- 64 (220)
T ss_dssp CSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSE--------------EEEEESSCCCCHHHHHH---
T ss_pred cCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCc--------------EEEEECCCCCCHHHHHH---
Confidence 34566777765 799999999999999999999999999 32222 33444333221122222
Q ss_pred cCCCCCCcCCcCCHHHHHHHHHhcCCh--hHHhcCCCCcccCCCCCcChHH--HHHHHHHHHHccC-CCEEEEeCCCCCC
Q 001329 535 YPLTSDQEVEPLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGE--QQRLGMARLFYHK-PKFAILDECTSAV 609 (1099)
Q Consensus 535 ~~~~~~~~~~~~~~~~i~~~l~~~~l~--~~~~~~p~~~~~~~g~~LSGGq--rQRlaIARAL~~~-P~iliLDEpTSaL 609 (1099)
.++..++. ++.++... ..+|+++ +|+++.+|+++.+ |+++|+||||+.+
T Consensus 65 -------------------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 65 -------------------MAETRGLNPEEALSRFIL-------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp -------------------HHHTTTCCHHHHHHHEEE-------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred -------------------HHHhcCCChHHHhhcEEE-------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 22222221 11121110 1345553 6789999999986 9999999999999
Q ss_pred CHHHH--------HHHH----HHHHhcCcEEEEEccChh-------------HH-HhcCEEEEEeCC
Q 001329 610 TTDME--------ERFC----AKVRAMGTSCITISHRPA-------------LV-AFHDVVLSLDGE 650 (1099)
Q Consensus 610 D~~~~--------~~l~----~~l~~~g~TvI~ItH~l~-------------~i-~~~D~Il~l~~~ 650 (1099)
|+... .++. ++.++.|+|+|+++|... .+ ..+|.+++|+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 97321 2232 333456999999999754 23 468999999754
No 119
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.42 E-value=2.5e-14 Score=153.24 Aligned_cols=126 Identities=13% Similarity=0.058 Sum_probs=88.9
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC--CccEEEeCCCC--ccccccEEEEecCCCCCcc-cH----HHHhccC
Q 001329 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVG--SDLNKEIFYVPQRPYTAVG-TL----RDQLIYP 536 (1099)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p--~~G~I~i~g~~--~~~r~~i~~v~Q~p~l~~~-Ti----~eni~~~ 536 (1099)
-..++|++++|+||||||||||+++|+|+++| .+|.|.+.+.+ ...++.++|+||++..|.. ++ .||+.+.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 45789999999999999999999999999986 78998887754 2234578999998754432 22 1222211
Q ss_pred CCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001329 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1099)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~ 616 (1099)
. .+.|-.+++ ++.++.+++++||| ||+....+
T Consensus 91 ~----------------------------------------~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 91 G----------------------------------------NYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp T----------------------------------------EEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred h----------------------------------------ccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 0 011111221 34445568999999 99999999
Q ss_pred HHHHHHhcCcEEEEEccChhHHHh
Q 001329 617 FCAKVRAMGTSCITISHRPALVAF 640 (1099)
Q Consensus 617 l~~~l~~~g~TvI~ItH~l~~i~~ 640 (1099)
+.+.+. .+.||++++|+++.+..
T Consensus 123 i~~~l~-~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 123 IRQKMP-HARSIFILPPSKIELDR 145 (219)
T ss_dssp HHHHCT-TCEEEEEECSSHHHHHH
T ss_pred HHHHcc-CCEEEEEECCCHHHHHH
Confidence 999876 58999999999998765
No 120
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.39 E-value=1.4e-15 Score=157.79 Aligned_cols=136 Identities=12% Similarity=0.006 Sum_probs=87.1
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC----ccccccEEEEecCCCCCcccHHHHhccCCCCC--
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSD-- 540 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~-- 540 (1099)
.+++|++++|+||||||||||+++|+|. |+.|.|.++|.+ ...++.++|++|++. ...++.+|+.+.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~~~~~~~~ 81 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ-QNRMIMQIAADVAGRYAK 81 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh-hhHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999998 788999999854 111234567777654 3457888875421100
Q ss_pred CcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 001329 541 QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK 620 (1099)
Q Consensus 541 ~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~ 620 (1099)
...... +..+++..++..+... . .....+|+|++||+++||++.++|+++ +|+...+.+.+.
T Consensus 82 ~~~~~~----~~~~~~~~~l~~~~~~-~-----~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 82 EGYFVI----LDGVVRPDWLPAFTAL-A-----RPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp TSCEEE----ECSCCCTTTTHHHHTT-C-----SCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred cCCeEE----EeccCcHHHHHHHHhc-C-----CCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 000000 0000111222222210 0 011369999999999999999999876 688777777766
Q ss_pred HHh
Q 001329 621 VRA 623 (1099)
Q Consensus 621 l~~ 623 (1099)
++.
T Consensus 144 ~~~ 146 (191)
T 1zp6_A 144 FAD 146 (191)
T ss_dssp TTC
T ss_pred Hhc
Confidence 543
No 121
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.37 E-value=4.6e-13 Score=161.09 Aligned_cols=73 Identities=12% Similarity=0.169 Sum_probs=67.8
Q ss_pred Cc-ChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001329 578 EL-SLGEQQRLGMARLFYHKP--KFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1099)
Q Consensus 578 ~L-SGGqrQRlaIARAL~~~P--~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1099)
+| ||||||||+||||++.+| ++|||||||+|||+.+...+.+.+++. |.|||+|||+++.+..||++++|+++
T Consensus 396 ~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 396 DVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 67 999999999999999999 999999999999999999988877653 89999999999999999999999764
No 122
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.36 E-value=7.5e-14 Score=162.59 Aligned_cols=181 Identities=16% Similarity=0.117 Sum_probs=108.2
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCE--EEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecC
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSN--LLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~--vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~ 521 (1099)
.+++++ ++.|+ +.+ |+++||++++|++ ++|+||||||||||+++|+|+.- .|.-.........++.++|++|+
T Consensus 16 ~l~~~~-~~~y~-~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~ 90 (427)
T 2qag_B 16 TVPLAG-HVGFD-SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQE 90 (427)
T ss_dssp -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC
T ss_pred eEEEee-EEEEC-Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeec
Confidence 355556 66774 345 9999999999999 99999999999999999999841 22211110111234579999999
Q ss_pred CCCC-cccHHHHhccCCCCCCcC-Cc----CCHHHHHHHHHhc-CChhHHhcCCCCcc--------cCCCCCcChHHHHH
Q 001329 522 PYTA-VGTLRDQLIYPLTSDQEV-EP----LTHGGMVELLKNV-DLEYLLDRYPPEKE--------INWGDELSLGEQQR 586 (1099)
Q Consensus 522 p~l~-~~Ti~eni~~~~~~~~~~-~~----~~~~~i~~~l~~~-~l~~~~~~~p~~~~--------~~~g~~LSGGqrQR 586 (1099)
+.++ ..|+.||+.++....... .. ..+++..+.++.. ++..-+...+ +.. .+.+..|+-.+
T Consensus 91 ~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~-d~rVh~~v~fI~d~~~~l~~~D--- 166 (427)
T 2qag_B 91 SNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYH-DSRIHVCLYFIAPTGHSLKSLD--- 166 (427)
T ss_dssp --CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSC-C--CCEEEEEECCCC---CHHH---
T ss_pred CccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccc-cccccEEEEEEeCCCCCCCHHH---
Confidence 8776 469999998875321000 00 0012233334333 3221000111 111 12234577666
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEcc
Q 001329 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISH 633 (1099)
Q Consensus 587 laIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~----~~g~TvI~ItH 633 (1099)
+.|+++|..+++++++||||..|.+.....+.+.++ ..|.+|+.++.
T Consensus 167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 799999999999999999999999876666655444 45888888885
No 123
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.36 E-value=1.8e-14 Score=160.73 Aligned_cols=132 Identities=14% Similarity=0.047 Sum_probs=88.2
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCC------CcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSD------QEV 543 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~------~~~ 543 (1099)
++.+++|+|+||||||||++.|.+++++. | .+ ++.+.+|+||++++..++++|+.++...+ +..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~---~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p 99 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GG---EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLP 99 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GG---GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CC---CceEEEeccccccCChHHHHHHhccccccchhhhccCc
Confidence 45789999999999999999999999864 2 00 33466779999999999999997653210 111
Q ss_pred CcCCHHHHHHHHHhcCChhHHhcCC-CCccc-CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 001329 544 EPLTHGGMVELLKNVDLEYLLDRYP-PEKEI-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613 (1099)
Q Consensus 544 ~~~~~~~i~~~l~~~~l~~~~~~~p-~~~~~-~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~ 613 (1099)
...+.+.+.+.++.+.-.. +... ..... ..+..+||||+||+++|++...+|+|+|+||||+++|+..
T Consensus 100 ~a~d~~~l~~~l~~l~~g~--~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 100 GTHDMKLLQEVLNTIFNNN--EHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp TSBCHHHHHHHHHHHTC--------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred chhHHHHHHHHHHHhhccC--ccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 2234455555555543210 0000 00000 1245899999999999833333999999999999999854
No 124
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.29 E-value=5.3e-15 Score=168.54 Aligned_cols=168 Identities=13% Similarity=0.122 Sum_probs=108.5
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc----------cccccE
Q 001329 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEI 515 (1099)
Q Consensus 446 ~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~----------~~r~~i 515 (1099)
+++++++.|. +..+++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.+. ..+.++
T Consensus 31 e~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i 109 (337)
T 2qm8_A 31 ESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRM 109 (337)
T ss_dssp TCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGS
T ss_pred eeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhh
Confidence 3445555552 35689999999999999999999999999999999999999999999987541 245679
Q ss_pred EEEecCCCCCc----------c---cHHHHhcc----CCCC-----CCcCCcCCHHHHHHHHHhcC--------------
Q 001329 516 FYVPQRPYTAV----------G---TLRDQLIY----PLTS-----DQEVEPLTHGGMVELLKNVD-------------- 559 (1099)
Q Consensus 516 ~~v~Q~p~l~~----------~---Ti~eni~~----~~~~-----~~~~~~~~~~~i~~~l~~~~-------------- 559 (1099)
++++|++.++. | +++|.+.. +... .+.. ..+..+. +.++
T Consensus 110 ~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~--~~~~~v~---~~~d~vl~v~d~~~~~~~ 184 (337)
T 2qm8_A 110 ARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVG--QSETAVA---DLTDFFLVLMLPGAGDEL 184 (337)
T ss_dssp TTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSS--SCHHHHH---TTSSEEEEEECSCC----
T ss_pred eeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCC--cchhhHH---hhCCEEEEEEcCCCcccH
Confidence 99999987663 1 12322210 0000 0000 0000110 0000
Q ss_pred --ChhHHhcCCCCccc---C--CCCCcChHHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 001329 560 --LEYLLDRYPPEKEI---N--WGDELSLGEQQRLGMARLFYH------KPKFAILDECTSAVTTDMEERFCAKVRA 623 (1099)
Q Consensus 560 --l~~~~~~~p~~~~~---~--~g~~LSGGqrQRlaIARAL~~------~P~iliLDEpTSaLD~~~~~~l~~~l~~ 623 (1099)
+...+...+.-... + ...++|+|++|++..|++++. +|+++. |||+|......+.+.+.+
T Consensus 185 ~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 185 QGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp --CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 00000011110000 1 013589999999999999987 688886 999999999888887765
No 125
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.29 E-value=1.5e-13 Score=161.93 Aligned_cols=150 Identities=12% Similarity=0.102 Sum_probs=102.8
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--c--------c--ccccEEEEecCCCCC-cc
Q 001329 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--S--------D--LNKEIFYVPQRPYTA-VG 527 (1099)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~--------~--~r~~i~~v~Q~p~l~-~~ 527 (1099)
-+++||++++|++++|+|+||||||||++.|+|+++|++|+|.+.|.+ . . .|+.|+|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 468899999999999999999999999999999999999999997654 1 1 256799999998654 46
Q ss_pred cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc-cCC-CEEEEeCC
Q 001329 528 TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY-HKP-KFAILDEC 605 (1099)
Q Consensus 528 Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~-~~P-~iliLDEp 605 (1099)
++++|+.++.... .+ + -+++.+|..+... .+-.-.+|++.++|++. ..| ++++..+|
T Consensus 363 tV~e~l~~a~~~~-----~D---v-VLIDTaGrl~~~~------------~lm~EL~kiv~iar~l~~~~P~evLLvLDa 421 (503)
T 2yhs_A 363 VIFDAIQAAKARN-----ID---V-LIADTAGRLQNKS------------HLMEELKKIVRVMKKLDVEAPHEVMLTIDA 421 (503)
T ss_dssp HHHHHHHHHHHTT-----CS---E-EEECCCCSCCCHH------------HHHHHHHHHHHHHHTTCTTCSSEEEEEEEG
T ss_pred HHHHHHHHHHhcC-----CC---E-EEEeCCCccchhh------------hHHHHHHHHHHHHHHhccCCCCeeEEEecC
Confidence 8999998753211 00 0 0122222211101 11112358899999875 456 45666669
Q ss_pred CCCCCHHHHHHHHHHHHhcCcEEEEEcc
Q 001329 606 TSAVTTDMEERFCAKVRAMGTSCITISH 633 (1099)
Q Consensus 606 TSaLD~~~~~~l~~~l~~~g~TvI~ItH 633 (1099)
|++.|...+ +...-+..|.|.+++||
T Consensus 422 ttGq~al~~--ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 422 STGQNAVSQ--AKLFHEAVGLTGITLTK 447 (503)
T ss_dssp GGTHHHHHH--HHHHHHHTCCSEEEEEC
T ss_pred cccHHHHHH--HHHHHhhcCCCEEEEEc
Confidence 988765432 22233346899999999
No 126
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.27 E-value=1.9e-15 Score=170.91 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=94.6
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcC--------cCCccEEEeCCCC---------------------ccccccEEEE---e
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLW--------PLVSGHIAKPGVG---------------------SDLNKEIFYV---P 519 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~--------~p~~G~I~i~g~~---------------------~~~r~~i~~v---~ 519 (1099)
++++|+|+||||||||+|.|+|+. .|+.|+|.+||.. .++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 7899999998743 1123456766 6
Q ss_pred cCCCC-CcccHHHHhccCCCCCCcCCcC-CHHH------HHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001329 520 QRPYT-AVGTLRDQLIYPLTSDQEVEPL-THGG------MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1099)
Q Consensus 520 Q~p~l-~~~Ti~eni~~~~~~~~~~~~~-~~~~------i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1099)
|++.+ +..++.||..++.+.. ..... .+.+ +.+++..+++.++.++.+ +||+||+||+..++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~-~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~---------~ls~g~~Q~~~ad~ 154 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGP-IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN---------QFTIAQSQVGYADR 154 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHH-HHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH---------HCHHHHHHHHTCSE
T ss_pred hcCCCCCCEEEEeCCCCCCHHH-HHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh---------hchHHHHHHHhCCE
Confidence 77653 4567777776543210 00000 0000 001122333334433332 68999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChh
Q 001329 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPA 636 (1099)
Q Consensus 592 AL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~ 636 (1099)
+++.+|+++ ||| .++.+.+++ .+.|++++||+..
T Consensus 155 ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 155 ILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp EEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred EEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 999999987 998 344444433 4899999999743
No 127
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.27 E-value=1.4e-14 Score=157.33 Aligned_cols=139 Identities=23% Similarity=0.288 Sum_probs=92.8
Q ss_pred CCCEEEEEcCCCCchhHHHHHhc---CcCcCCccEEEeCCCC--ccccccEEEEecCCCCC-cccHHHHhccCCC---CC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLG---GLWPLVSGHIAKPGVG--SDLNKEIFYVPQRPYTA-VGTLRDQLIYPLT---SD 540 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~---Gl~~p~~G~I~i~g~~--~~~r~~i~~v~Q~p~l~-~~Ti~eni~~~~~---~~ 540 (1099)
++++++|+||||||||||+++|+ |+..|++|+|.++|.+ ..+...++.++|++.++ ..++.+++..... ..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47999999999999999999999 9999999999876532 12233455667776544 4588888864211 00
Q ss_pred Cc-C--CcCCHHHHHHHHH--hcC------------ChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH-ccCCCEEEE
Q 001329 541 QE-V--EPLTHGGMVELLK--NVD------------LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF-YHKPKFAIL 602 (1099)
Q Consensus 541 ~~-~--~~~~~~~i~~~l~--~~~------------l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL-~~~P~iliL 602 (1099)
.. . .....+++..+.+ .++ +....++.+ .+||| |+ ||+ +.+|++++|
T Consensus 106 ~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~--------~~lSg----rv---~al~~~~P~~lll 170 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWI--------HPPSG----RV---YNLDFNPPHVHGI 170 (246)
T ss_dssp CEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE--------ETTTT----EE---EETTTSCCSSTTB
T ss_pred eEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCC--------cCCCC----Cc---cccccCCCccccc
Confidence 00 0 0112223333221 222 222233333 37999 66 788 999999999
Q ss_pred e----CCCCCCCHHHHHHHHHHHHh
Q 001329 603 D----ECTSAVTTDMEERFCAKVRA 623 (1099)
Q Consensus 603 D----EpTSaLD~~~~~~l~~~l~~ 623 (1099)
| |||++||+.+++.+.+.+++
T Consensus 171 D~~~~EP~~~ld~~~~~~i~~~l~~ 195 (246)
T 2bbw_A 171 DDVTGEPLVQQEDDKPEAVAARLRQ 195 (246)
T ss_dssp CTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred ccccccccccCCCCcHHHHHHHHHH
Confidence 9 99999999988888776654
No 128
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.27 E-value=4.6e-13 Score=153.03 Aligned_cols=120 Identities=19% Similarity=0.206 Sum_probs=83.1
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-CCccEEEeC-CCC--ccccccEEEEecCCCCCc-ccHHHHh
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-LVSGHIAKP-GVG--SDLNKEIFYVPQRPYTAV-GTLRDQL 533 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-p~~G~I~i~-g~~--~~~r~~i~~v~Q~p~l~~-~Ti~eni 533 (1099)
.-++++++. .+|++++|+||||||||||+++|+|+.+ |.+|+|.++ |.+ ...+..++++||+++++. .+++++-
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh
Confidence 346777764 4899999999999999999999999999 999999886 643 234567999999987664 4788742
Q ss_pred ccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001329 534 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1099)
Q Consensus 534 ~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1099)
..+. ......+.+.++++.+++.++.+..+. +|| ||+||++||+++
T Consensus 283 l~~l-----~~~e~~~~~~e~l~~~gl~~f~~~~~~--------~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 LWHL-----EPEQITQGFVEFHDYLGHCKYRDCKHD--------ADP-GCAIREAVENGA 328 (358)
T ss_dssp CCCC-----CHHHHHHTSGGGGGGTTCSSSTTCCSS--------SCT-TCHHHHHHHHTS
T ss_pred hcCC-----CHHHHHHHHHHHHHHcCCchhcCCCcc--------cCC-HHHHHHHHHhcC
Confidence 2110 000112234567788888887777663 799 999999999875
No 129
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.26 E-value=4.9e-12 Score=135.63 Aligned_cols=141 Identities=19% Similarity=0.221 Sum_probs=78.8
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcC--cCcC-----CccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCC
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLGG--LWPL-----VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS 539 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~G--l~~p-----~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~ 539 (1099)
-+++|++++|+||||||||||++.|++ ..+| .+|.+.+++.+ ...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~--------------~~~-------------- 71 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG--------------TFR-------------- 71 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS--------------CCC--------------
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC--------------CcC--------------
Confidence 589999999999999999999999999 5665 45556555432 000
Q ss_pred CCcCCcCCHHHHHHHHHhcCCh--hHHhcCCCCcccCCCCCcChHHHHH-HHHHHHHc--cCCCEEEEeCCCCCCCHH--
Q 001329 540 DQEVEPLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQR-LGMARLFY--HKPKFAILDECTSAVTTD-- 612 (1099)
Q Consensus 540 ~~~~~~~~~~~i~~~l~~~~l~--~~~~~~p~~~~~~~g~~LSGGqrQR-laIARAL~--~~P~iliLDEpTSaLD~~-- 612 (1099)
.+++.+.++.++.. +..++.. +....++.+... +.-++.++ .+|+++++|||++.+|+.
T Consensus 72 --------~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 72 --------PERLLAVAERYGLSGSDVLDNVA------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp --------HHHHHHHHHHTTCCHHHHHHTEE------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred --------HHHHHHHHHHcCCCHHHHhhCeE------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 11111122222221 0111100 001234444332 22233333 589999999999999975
Q ss_pred -----HH-----HHHHH----HHHhcCcEEEEEccChhHHH--------------------hcCEEEEEeC
Q 001329 613 -----ME-----ERFCA----KVRAMGTSCITISHRPALVA--------------------FHDVVLSLDG 649 (1099)
Q Consensus 613 -----~~-----~~l~~----~l~~~g~TvI~ItH~l~~i~--------------------~~D~Il~l~~ 649 (1099)
.+ ..+.. ..++.|+|+|+++|...... .+|.+++|+.
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 32 22322 23345999999999554321 5799988875
No 130
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.25 E-value=1.1e-14 Score=170.17 Aligned_cols=142 Identities=21% Similarity=0.183 Sum_probs=98.8
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc----------ccccc
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKE 514 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~----------~~r~~ 514 (1099)
++++++++.|. ...+|+++ +. ++|++++|+||||||||||+++|+|+++|++|+|.+.+.+- .++++
T Consensus 144 ~~l~~Lg~~~~-~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 144 LDLHSLGMTAH-NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCGGGSCCCHH-HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCHHHcCCCHH-HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 34445544331 23467777 53 89999999999999999999999999999999999876541 23445
Q ss_pred EEEEe---------cCCCCC--c-----ccHHHHhccCCCCCCc---CCcCCHHHHHHHHHhcCChhHHhcCCCCcccCC
Q 001329 515 IFYVP---------QRPYTA--V-----GTLRDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINW 575 (1099)
Q Consensus 515 i~~v~---------Q~p~l~--~-----~Ti~eni~~~~~~~~~---~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~ 575 (1099)
+++.+ |+|... . .|+.+++.+....+.. ....+..+..+.+..+++.++. .+
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--~~------- 291 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--IS------- 291 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH--HH-------
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH--HH-------
Confidence 66655 998752 1 4888888764322110 0111223455567888887653 22
Q ss_pred CCCcChHHHHHHHHHHHHccCCCEEE
Q 001329 576 GDELSLGEQQRLGMARLFYHKPKFAI 601 (1099)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~~P~ili 601 (1099)
.+|||||+|| |||+++.+|++..
T Consensus 292 -~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 292 -SSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp -HHEEEEEEEE--EEEEECTTTCEEE
T ss_pred -HHHHHHHHHH--hhhhhcCCCCccC
Confidence 3799999999 9999999999865
No 131
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.23 E-value=1.6e-11 Score=141.53 Aligned_cols=75 Identities=25% Similarity=0.352 Sum_probs=66.9
Q ss_pred CcChHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEe
Q 001329 578 ELSLGEQQRL------GMARLFYHK-PKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648 (1099)
Q Consensus 578 ~LSGGqrQRl------aIARAL~~~-P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1099)
.||||||||+ ++||++..+ |+++||||||++||+.....+.+.+++. +.++|+|||++.....+|++++++
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~ 359 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVK 359 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEE
Confidence 6999999988 668999999 9999999999999999999999998764 469999999998777899999998
Q ss_pred CCCc
Q 001329 649 GEGE 652 (1099)
Q Consensus 649 ~~g~ 652 (1099)
++|+
T Consensus 360 k~~~ 363 (371)
T 3auy_A 360 KDGN 363 (371)
T ss_dssp ESSS
T ss_pred ecCC
Confidence 6543
No 132
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.22 E-value=3.9e-13 Score=152.38 Aligned_cols=141 Identities=12% Similarity=0.022 Sum_probs=93.2
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc----------ccc--ccEEEEecCCCCCc-ccHHHHh
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLN--KEIFYVPQRPYTAV-GTLRDQL 533 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~----------~~r--~~i~~v~Q~p~l~~-~Ti~eni 533 (1099)
..++|++++|+|||||||||+++.|+|+++|++|+|.+.|.+- .++ -.+.+++|++.+.+ .+++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999988651 112 24669999876654 5899998
Q ss_pred ccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 001329 534 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613 (1099)
Q Consensus 534 ~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~ 613 (1099)
.++...... . -+++..|..+.. ..=..+.-.++|++..++++++||.+|. .|..
T Consensus 205 ~~~~~~~~d---~------vliDtaG~~~~~---------------~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~- 258 (328)
T 3e70_C 205 QHAKARGID---V------VLIDTAGRSETN---------------RNLMDEMKKIARVTKPNLVIFVGDALAG-NAIV- 258 (328)
T ss_dssp HHHHHHTCS---E------EEEEECCSCCTT---------------TCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHH-
T ss_pred HHHHhccch---h------hHHhhccchhHH---------------HHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHH-
Confidence 764211000 0 001112221110 0112233349999999999999996665 3332
Q ss_pred HHHHHHHHHhcCcEEEEEccC
Q 001329 614 EERFCAKVRAMGTSCITISHR 634 (1099)
Q Consensus 614 ~~~l~~~l~~~g~TvI~ItH~ 634 (1099)
..+...-++.+.|.|++||-
T Consensus 259 -~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 259 -EQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp -HHHHHHHHHSCCCEEEEECG
T ss_pred -HHHHHHHHhcCCCEEEEeCc
Confidence 22333333569999999994
No 133
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.21 E-value=8.6e-13 Score=134.22 Aligned_cols=82 Identities=15% Similarity=-0.002 Sum_probs=67.1
Q ss_pred eeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--ccc-cccEEEEecCCCCC
Q 001329 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDL-NKEIFYVPQRPYTA 525 (1099)
Q Consensus 449 ~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~~~-r~~i~~v~Q~p~l~ 525 (1099)
|+++.|. ++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.+ ... ..+ +++|++.++
T Consensus 12 ~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~--~~~q~~~l~ 87 (158)
T 1htw_A 12 FSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAG--KMIYHFDLY 87 (158)
T ss_dssp HHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETT--EEEEEEECT
T ss_pred HHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCC--cceeccccc
Confidence 4445552 357899999999999999999999999999999999999 999999999975 111 122 799998777
Q ss_pred cccHHHHhc
Q 001329 526 VGTLRDQLI 534 (1099)
Q Consensus 526 ~~Ti~eni~ 534 (1099)
..|+.||+.
T Consensus 88 ~ltv~e~l~ 96 (158)
T 1htw_A 88 RLADPEELE 96 (158)
T ss_dssp TCSCTTHHH
T ss_pred cCCcHHHHH
Confidence 778888884
No 134
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.19 E-value=9.2e-14 Score=147.07 Aligned_cols=141 Identities=16% Similarity=0.173 Sum_probs=88.2
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCC
Q 001329 468 VEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLT 547 (1099)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~ 547 (1099)
.++|++++|+||||||||||+++|+|+++|+ | ..+++|+|+.+.+..+..+|+..... .......+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------~~~g~v~~d~~~~~~~~~~~~~~~~~-~~~~~~~~ 84 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------LPAEVVPMDGFHLDNRLLEPRGLLPR-KGAPETFD 84 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------CCEEEEESGGGBCCHHHHGGGTCGGG-TTSGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------CceEEEecCCCcCCHHHHHHhccccc-CCCCchhh
Confidence 4789999999999999999999999999876 4 14778888877666666666532110 01111123
Q ss_pred HHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH-HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCc
Q 001329 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA-RLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626 (1099)
Q Consensus 548 ~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA-RAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~ 626 (1099)
...+.+.+..+...+.+. .| ..+++..+|+||+||+++| ++++.++.++++|||.- ..+.+.--
T Consensus 85 ~~~~~~~l~~l~~~~~i~-~p---~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d 149 (208)
T 3c8u_A 85 FEGFQRLCHALKHQERVI-YP---LFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWD 149 (208)
T ss_dssp HHHHHHHHHHHHHCSCEE-EE---EEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCS
T ss_pred HHHHHHHHHHHhcCCcee-cc---cCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcC
Confidence 334444433321110000 01 1134567899999999998 88888888888888741 01122223
Q ss_pred EEEEEccChhH
Q 001329 627 SCITISHRPAL 637 (1099)
Q Consensus 627 TvI~ItH~l~~ 637 (1099)
.+|++.+..+.
T Consensus 150 ~~i~vd~~~~~ 160 (208)
T 3c8u_A 150 VSIRLEVPMAD 160 (208)
T ss_dssp EEEEECCCHHH
T ss_pred EEEEEeCCHHH
Confidence 56777777664
No 135
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.18 E-value=3.7e-12 Score=142.86 Aligned_cols=115 Identities=16% Similarity=0.146 Sum_probs=83.0
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEe---CCCC-----cccc-ccEEEEecCCCCC------cccHHH
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK---PGVG-----SDLN-KEIFYVPQRPYTA------VGTLRD 531 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i---~g~~-----~~~r-~~i~~v~Q~p~l~------~~Ti~e 531 (1099)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|.+ ...+ +.+|||+|+|.+. ..|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 34579999999999999999999999 99999999999 7754 1112 3689999999653 4578 8
Q ss_pred Hh--ccCC------CCCC-cCCcCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001329 532 QL--IYPL------TSDQ-EVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1099)
Q Consensus 532 ni--~~~~------~~~~-~~~~~~~~~i~~~l~~~~l~~-~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1099)
|+ .++. .... ....+....+.++++.++|.+ ..+++|. .|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~--------~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK--------IIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH--------HTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH--------HHHHHHHHHHHHhc
Confidence 88 5551 0111 011234467899999999986 7777774 79998899999987
No 136
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.17 E-value=3.6e-11 Score=141.29 Aligned_cols=72 Identities=26% Similarity=0.326 Sum_probs=66.2
Q ss_pred CcChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEccChhHHHhcCEEEEEeC
Q 001329 578 ELSLGEQQRLGMARLFY----HKPKFAILDECTSAVTTDMEERFCAKVRAM---GTSCITISHRPALVAFHDVVLSLDG 649 (1099)
Q Consensus 578 ~LSGGqrQRlaIARAL~----~~P~iliLDEpTSaLD~~~~~~l~~~l~~~---g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1099)
.||||||||++||++|+ .+|+++||||||++||+.....+.+.+++. +.++|+|||+......||+++.+..
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYR 411 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEEE
Confidence 49999999999999999 689999999999999999999999988763 6799999999988889999999864
No 137
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=1.4e-11 Score=140.19 Aligned_cols=133 Identities=20% Similarity=0.165 Sum_probs=77.2
Q ss_pred CEEEEEcCCCCchhHHHHHhcC-cCcCCccEEEeCCCC----ccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGG-LWPLVSGHIAKPGVG----SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~G-l~~p~~G~I~i~g~~----~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~ 546 (1099)
..+.|+||+|+||||++++++| ++.|+.|.+.++|.+ ...+..+++++|.+++.. ..... ...
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---~~~ 104 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEI---------TPSDM---GNN 104 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEE---------CCC-------C
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEe---------cHhhc---CCc
Confidence 3499999999999999999999 899999999998854 112456888888775311 10000 001
Q ss_pred CHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--
Q 001329 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM-- 624 (1099)
Q Consensus 547 ~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~-- 624 (1099)
....+.+.++.+.- ..+.+.. .+||| +..+|+++|+|||++ ||+..+..+.+.+++.
T Consensus 105 ~~~~~~~~i~~~~~-----~~~~~~~----~~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 105 DRIVIQELLKEVAQ-----MEQVDFQ----DSKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp CHHHHHHHHHHHTT-----TTC---------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT
T ss_pred chHHHHHHHHHHHH-----hcccccc----ccccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC
Confidence 11123344333211 1110000 03576 788999999999999 9999999999998863
Q ss_pred CcEEEEEccChhH
Q 001329 625 GTSCITISHRPAL 637 (1099)
Q Consensus 625 g~TvI~ItH~l~~ 637 (1099)
+.++|++||+++.
T Consensus 164 ~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 164 NIRLIMVCDSMSP 176 (354)
T ss_dssp TEEEEEEESCSCS
T ss_pred CCEEEEEeCCHHH
Confidence 7899999998763
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.12 E-value=6.9e-11 Score=137.37 Aligned_cols=142 Identities=18% Similarity=0.225 Sum_probs=81.7
Q ss_pred EEeCCCEEEEEcCCCCchhHHHH--HhcCcCcCCcc-----EEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCC
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFR--VLGGLWPLVSG-----HIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS 539 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~--lL~Gl~~p~~G-----~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~ 539 (1099)
-|++|++++|+||||||||||++ ++.+..+++.| .+++++.+ .
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~--------------~---------------- 223 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG--------------T---------------- 223 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS--------------C----------------
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC--------------c----------------
Confidence 68999999999999999999999 45688887655 55555432 0
Q ss_pred CCcCCcCCHHHHHHHHHhcCCh--hHHhcCCCCcccCCCCCcCh-HHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHHH
Q 001329 540 DQEVEPLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSL-GEQQRLGMARLFY--HKPKFAILDECTSAVTTDME 614 (1099)
Q Consensus 540 ~~~~~~~~~~~i~~~l~~~~l~--~~~~~~p~~~~~~~g~~LSG-GqrQRlaIARAL~--~~P~iliLDEpTSaLD~~~~ 614 (1099)
....++.+.++.+++. ...+..-. ....++ .+.+.+.-++.++ .+|+++++||||+.+|.+..
T Consensus 224 ------~~~~rl~~~a~~~gl~~~~vleni~~------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 224 ------FRPVRLVSIAQRFGLDPDDALNNVAY------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp ------CCHHHHHHHHHHTTCCHHHHHHTEEE------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred ------cCHHHHHHHHHHcCCChHhHhhcEEE------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 0112233333334432 11111000 001121 2233333333333 57999999999999996532
Q ss_pred ------------HHHHHHH----HhcCcEEEEEccChh-------------------HHH-hcCEEEEEeCC
Q 001329 615 ------------ERFCAKV----RAMGTSCITISHRPA-------------------LVA-FHDVVLSLDGE 650 (1099)
Q Consensus 615 ------------~~l~~~l----~~~g~TvI~ItH~l~-------------------~i~-~~D~Il~l~~~ 650 (1099)
.++++.| ++.|+|+|+|+|... .+. .+|.++.|+.+
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 2333333 456999999999721 123 36888888753
No 139
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.11 E-value=6.5e-12 Score=129.32 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=72.6
Q ss_pred eEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCC
Q 001329 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544 (1099)
Q Consensus 465 sl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~ 544 (1099)
++++++|+.++|+||||||||||+++|++...|.+|.. +.|+ +..+.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------~~~~---------~~~~~~----------- 79 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------GYFF---------DTKDLI----------- 79 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------CCEE---------EHHHHH-----------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------EEEE---------EHHHHH-----------
Confidence 46678899999999999999999999999987766631 1121 111111
Q ss_pred cCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHh
Q 001329 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS-AVTTDMEERFCAKVRA 623 (1099)
Q Consensus 545 ~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTS-aLD~~~~~~l~~~l~~ 623 (1099)
+.+.... ... ... -....+.+|++||||||++ ++|+..+..+.+.+.+
T Consensus 80 ----~~~~~~~---------~~~----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~ 128 (180)
T 3ec2_A 80 ----FRLKHLM---------DEG----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITY 128 (180)
T ss_dssp ----HHHHHHH---------HHT----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHh---------cCc----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 0011111 110 011 1112245999999999996 8999998888877653
Q ss_pred ---cCcEEEEEccChh
Q 001329 624 ---MGTSCITISHRPA 636 (1099)
Q Consensus 624 ---~g~TvI~ItH~l~ 636 (1099)
.|+++|++||...
T Consensus 129 ~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 129 RYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHTTCEEEEECCCCS
T ss_pred HHHcCCCEEEEcCCCh
Confidence 5899999999653
No 140
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.06 E-value=1.1e-11 Score=144.72 Aligned_cols=156 Identities=17% Similarity=0.098 Sum_probs=89.0
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC-ccccccEEEEecCCCCCcccHHHHhccCCCC
Q 001329 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS 539 (1099)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~ 539 (1099)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+ ..+...+++|+|+.. ...++.|+..+....
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl~p~~G~V~~~~~-~~~~l~DtpGli~~a 219 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTLSPNLGVVEVSEE-ERFTLADIPGIIEGA 219 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSSCCEEEEEECSSS-CEEEEEECCCCCCCG
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccceecceeeEEEecCc-ceEEEEeccccccch
Confidence 479999999999999999999999999999999854 222222 123345666666541 111222211110000
Q ss_pred CCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH---H
Q 001329 540 DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE---R 616 (1099)
Q Consensus 540 ~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~---~ 616 (1099)
. ........ ..+.++.+.. ++...... .....+||+||+|++++|++|..+|.++++ +.+|..... .
T Consensus 220 ~-~~~~L~~~-fl~~~era~~--lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~ 289 (416)
T 1udx_A 220 S-EGKGLGLE-FLRHIARTRV--LLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKA 289 (416)
T ss_dssp G-GSCCSCHH-HHHHHTSSSE--EEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHH
T ss_pred h-hhhhhhHH-HHHHHHHHHh--hhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHH
Confidence 0 00001111 1111111111 11000000 001136999999999999999999999999 889975442 2
Q ss_pred HHHHHHhcCcEEEEEcc
Q 001329 617 FCAKVRAMGTSCITISH 633 (1099)
Q Consensus 617 l~~~l~~~g~TvI~ItH 633 (1099)
+.+.+++.+.+++.||.
T Consensus 290 l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 290 LADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHTTTSCEEECCT
T ss_pred HHHHHHhcCCeEEEEEC
Confidence 33444455777777664
No 141
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.06 E-value=2e-11 Score=136.86 Aligned_cols=100 Identities=19% Similarity=0.149 Sum_probs=68.8
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEe---CCCC----cc-c-cccEEEEecCCCC------------
Q 001329 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK---PGVG----SD-L-NKEIFYVPQRPYT------------ 524 (1099)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i---~g~~----~~-~-r~~i~~v~Q~p~l------------ 524 (1099)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|.+ .. . .+.+++|+|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 345679999999999999999999999999999999999 7754 11 1 1368999999852
Q ss_pred -----CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCCh-hHHhcCCC
Q 001329 525 -----AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPP 569 (1099)
Q Consensus 525 -----~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~p~ 569 (1099)
+..|+ +|+.++...+ ..+...++.++++.++|+ +..+++|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~---~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNH---VDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCS---SSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcC---CCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 23477 8888764322 123446789999999994 78888884
No 142
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.05 E-value=1.5e-10 Score=116.35 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=31.6
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCcc
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G 500 (1099)
.+++++ +|+.++|+||||||||||+++|++.+.+ +|
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 356666 8999999999999999999999999886 35
No 143
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.04 E-value=1.2e-12 Score=156.68 Aligned_cols=171 Identities=12% Similarity=0.055 Sum_probs=107.6
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc-c--ccccEEEEecCCCCC-cccHHHHh
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D--LNKEIFYVPQRPYTA-VGTLRDQL 533 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-~--~r~~i~~v~Q~p~l~-~~Ti~eni 533 (1099)
..+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+. . -...++++.|.+... ..|..+++
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l 326 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHH
Confidence 3578999999999999999999999999999999999999999999988641 1 134577788766522 13677766
Q ss_pred ccCCCCCC---cCCcCCHHHHHHHHHhcCC-------------hhHHhcC---CCCcc------c----CCCCCcChHHH
Q 001329 534 IYPLTSDQ---EVEPLTHGGMVELLKNVDL-------------EYLLDRY---PPEKE------I----NWGDELSLGEQ 584 (1099)
Q Consensus 534 ~~~~~~~~---~~~~~~~~~i~~~l~~~~l-------------~~~~~~~---p~~~~------~----~~g~~LSGGqr 584 (1099)
........ ........++..+++.+.- .+.++++ +.+.. . .....+||||+
T Consensus 327 ~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 327 RAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp HTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 54322110 0011222233333333211 1111111 11000 0 01235899999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEE--EccChhHHHh
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCIT--ISHRPALVAF 640 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~---~~g~TvI~--ItH~l~~i~~ 640 (1099)
||.++|. + | |++||+.....+.+.+. ..+.|+++ +||+++.+..
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 9987651 2 7 99999877655444333 34788875 8999997753
No 144
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.98 E-value=8.7e-13 Score=136.86 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=91.6
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCC-cccHHHHhccCCCCCCcCCcCCHH
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHG 549 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~ 549 (1099)
|++++|+||||||||||++.|++ |.+|.+.++|.+-.-...+++++|.+... ..++.+|+.+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------- 67 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTV----------- 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHH-----------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHH-----------
Confidence 68899999999999999999987 67799999874311012346667655222 2366666643210
Q ss_pred HHHHHHHhcCChhHHhcCCCCcccCCCCCc--ChHHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 001329 550 GMVELLKNVDLEYLLDRYPPEKEINWGDEL--SLGEQQRLGMAR------LFYHKPKFAILDECTSAVTTDMEERFCAKV 621 (1099)
Q Consensus 550 ~i~~~l~~~~l~~~~~~~p~~~~~~~g~~L--SGGqrQRlaIAR------AL~~~P~iliLDEpTSaLD~~~~~~l~~~l 621 (1099)
..+. .+....++..-.......-.++ |+||+|++.++. +++.+|+...+|+ ++|+..... .+.+
T Consensus 68 ---~~~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~ 139 (189)
T 2bdt_A 68 ---NFLL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEF 139 (189)
T ss_dssp ---HHHH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHH
T ss_pred ---HHHh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHH
Confidence 0000 0100000000000000000134 889999988888 8999998888884 789877666 5555
Q ss_pred Hh---cCcEEEEEccC-hhHHH-hcCEEE
Q 001329 622 RA---MGTSCITISHR-PALVA-FHDVVL 645 (1099)
Q Consensus 622 ~~---~g~TvI~ItH~-l~~i~-~~D~Il 645 (1099)
++ .+.++|.+||. ++.+. .+|+|+
T Consensus 140 ~~~~~~~~~ii~tsh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 140 ESKGIDERYFYNTSHLQPTNLNDIVKNLK 168 (189)
T ss_dssp HHTTCCTTSEEECSSSCGGGHHHHHHHHH
T ss_pred hhcCCCccEEEeCCCCChhhHHHHHHHHh
Confidence 43 46799999998 77765 467776
No 145
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.98 E-value=6.8e-13 Score=146.83 Aligned_cols=139 Identities=15% Similarity=0.136 Sum_probs=96.3
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--c----cccccEEEEecCC--CCCcccHH
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--S----DLNKEIFYVPQRP--YTAVGTLR 530 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~----~~r~~i~~v~Q~p--~l~~~Ti~ 530 (1099)
.+++++++++++| ++|+||||||||||+|+|+|...+ |.|.++|.+ . +..+.+++++|++ ..+.-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 5789999999999 999999999999999999999887 789998854 1 1234678888874 22334555
Q ss_pred HHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC---
Q 001329 531 DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS--- 607 (1099)
Q Consensus 531 eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTS--- 607 (1099)
|++........ ..+. + ...+..++++ .+|||||+||+.|++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~------~~~~-~-----~~~~~~~~~l--------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~g 167 (274)
T 2x8a_A 110 DEVDALCPRRS------DRET-G-----ASVRVVNQLL--------TEMDGLEARQQVFIMAATNRPDII--DPAILRPG 167 (274)
T ss_dssp ETCTTTCC---------------------CTTHHHHHH--------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTT
T ss_pred ehhhhhhcccC------CCcc-h-----HHHHHHHHHH--------HhhhcccccCCEEEEeecCChhhC--CHhhcCcc
Confidence 66654322110 0000 0 1223333333 269999999999999999999975 99864
Q ss_pred ---------CCCHHHHHHHHHHHHh
Q 001329 608 ---------AVTTDMEERFCAKVRA 623 (1099)
Q Consensus 608 ---------aLD~~~~~~l~~~l~~ 623 (1099)
--|.+.+.++++.+.+
T Consensus 168 Rfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 168 RLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp SSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 3367777777776543
No 146
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.97 E-value=1.6e-12 Score=146.12 Aligned_cols=89 Identities=17% Similarity=0.123 Sum_probs=69.7
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEE-------------------eCCCEEEEEcCCCCchhHHHHHhcCcCc--CCccE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKV-------------------EPGSNLLITGPNGSGKSSLFRVLGGLWP--LVSGH 501 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i-------------------~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--p~~G~ 501 (1099)
+.|+++||++.| .++++++|+.+ ++|+++||+||||||||||+++|+|+++ |++|+
T Consensus 36 ~~i~~~~v~~~y---~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIY---LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TTCCHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred cccchHhHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 468899999988 37999999988 9999999999999999999999999998 99999
Q ss_pred EEe---CCCC--ccccccEEEEecCCCCC-cccHHHHhcc
Q 001329 502 IAK---PGVG--SDLNKEIFYVPQRPYTA-VGTLRDQLIY 535 (1099)
Q Consensus 502 I~i---~g~~--~~~r~~i~~v~Q~p~l~-~~Ti~eni~~ 535 (1099)
|.+ ||.. ...++.++++ |+..++ ..++.+|+.+
T Consensus 113 i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 113 VELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp EEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred EEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 998 7754 1223456666 654432 2355555543
No 147
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.90 E-value=1.8e-10 Score=129.20 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=66.9
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEe---CCCC----ccc-cccEEEEecCCCCCc-----ccHHHH
Q 001329 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK---PGVG----SDL-NKEIFYVPQRPYTAV-----GTLRDQ 532 (1099)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i---~g~~----~~~-r~~i~~v~Q~p~l~~-----~Ti~en 532 (1099)
+++.+|++++|+||||+|||||+|+|+|+.+|.+|+|.+ +|.+ ..+ +..+++++|.|.+.. .|+ ||
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 456789999999999999999999999999999999998 6643 122 222799999996543 478 88
Q ss_pred hc--cCCC--------CCC-cCCcCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHH
Q 001329 533 LI--YPLT--------SDQ-EVEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQR 586 (1099)
Q Consensus 533 i~--~~~~--------~~~-~~~~~~~~~i~~~l~~~~l~~~-~~~~p~~~~~~~g~~LSGGqrQR 586 (1099)
+. |+.. ... ....+....+.++++.+++.+. .+.++ .|+.|++||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~---------~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYV---------EFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH---------HHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHH---------HHHHHHhhc
Confidence 83 4310 000 0112334578899999999764 45554 577888874
No 148
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.87 E-value=9.3e-10 Score=122.99 Aligned_cols=131 Identities=14% Similarity=0.073 Sum_probs=89.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCC
Q 001329 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l 524 (1099)
+.++++++.|... . ++++|+ +|++++++|+|||||||+++.|++++.+..|+|.+.+.| +.-
T Consensus 77 ~~~~~l~~~~~~~-~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d-------------~~~ 138 (295)
T 1ls1_A 77 TVYEALKEALGGE-A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD-------------TQR 138 (295)
T ss_dssp HHHHHHHHHTTSS-C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC-------------SSC
T ss_pred HHHHHHHHHHCCC-C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC-------------ccc
Confidence 4455666666432 2 778888 999999999999999999999999999888888765432 210
Q ss_pred CcccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeC
Q 001329 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1099)
Q Consensus 525 ~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDE 604 (1099)
. ...++ .....+..++.-+ |. +..-...+.+|.+++++...+++++|+||
T Consensus 139 -~-~~~~q------------------l~~~~~~~~l~~~----~~------~~~~~p~~l~~~~l~~~~~~~~D~viiDt 188 (295)
T 1ls1_A 139 -P-AAREQ------------------LRLLGEKVGVPVL----EV------MDGESPESIRRRVEEKARLEARDLILVDT 188 (295)
T ss_dssp -H-HHHHH------------------HHHHHHHHTCCEE----EC------CTTCCHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred -H-hHHHH------------------HHHhcccCCeEEE----Ec------CCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 0 00011 1112233333211 10 01234456689999999889999999999
Q ss_pred C-CCCCCHHHHHHHHHHHHh
Q 001329 605 C-TSAVTTDMEERFCAKVRA 623 (1099)
Q Consensus 605 p-TSaLD~~~~~~l~~~l~~ 623 (1099)
| ++++|.....++.+..+.
T Consensus 189 pp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 189 AGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp CCCSSCCHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHhhh
Confidence 9 999999888877766553
No 149
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.86 E-value=9.4e-12 Score=141.38 Aligned_cols=149 Identities=13% Similarity=0.181 Sum_probs=92.1
Q ss_pred EeeEEEcCCCCceeeeeeEEEeCC-------CEEEEEcCCCCchhHHHHHhcCcC----cCCccEEEeCCCC-----ccc
Q 001329 448 SGVKVVTPTGNVLVENLTLKVEPG-------SNLLITGPNGSGKSSLFRVLGGLW----PLVSGHIAKPGVG-----SDL 511 (1099)
Q Consensus 448 ~~v~~~y~~~~~vL~~vsl~i~~G-------e~vaIvG~sGsGKSTLl~lL~Gl~----~p~~G~I~i~g~~-----~~~ 511 (1099)
++++..| +...+++++++.+++| +.++|+||||||||||+++|+|.. .+++|.+..++.+ ..+
T Consensus 22 ~~l~~~~-g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~ 100 (334)
T 1in4_A 22 KSLDEFI-GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSL 100 (334)
T ss_dssp SSGGGCC-SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHC
T ss_pred ccHHHcc-CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHc
Confidence 3444334 3457899999999887 899999999999999999999998 7778877665533 112
Q ss_pred -cccEEEEecCCCCCcccHHHHhccCCCCCCcC----CcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH
Q 001329 512 -NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV----EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1099)
Q Consensus 512 -r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~----~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1099)
+..|.+++|.+.++. ++.|++.......... .......+.+.+..+++.. ....| ..||+|+|||
T Consensus 101 ~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~--------~~Ls~~l~sR 170 (334)
T 1in4_A 101 ERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS--------GLLSSPLRSR 170 (334)
T ss_dssp CTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCG--------GGSCHHHHTT
T ss_pred cCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCc--------ccCCHHHHHh
Confidence 457999999877654 7777774221111000 0011122223333333322 22222 3799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 001329 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623 (1099)
Q Consensus 587 laIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~ 623 (1099)
++++ .+||+.+.+++.+.+++
T Consensus 171 ~~l~----------------~~Ld~~~~~~l~~iL~~ 191 (334)
T 1in4_A 171 FGII----------------LELDFYTVKELKEIIKR 191 (334)
T ss_dssp CSEE----------------EECCCCCHHHHHHHHHH
T ss_pred cCce----------------eeCCCCCHHHHHHHHHH
Confidence 8655 56776666666665543
No 150
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.82 E-value=7.4e-12 Score=134.38 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=23.3
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhc-CcCcC
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLG-GLWPL 497 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~-Gl~~p 497 (1099)
...+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 5678999999999999999999999999999999 99843
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.82 E-value=9.6e-10 Score=123.43 Aligned_cols=98 Identities=13% Similarity=0.180 Sum_probs=72.5
Q ss_pred eeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcC
Q 001329 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV 543 (1099)
Q Consensus 464 vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~ 543 (1099)
++++.++|++++|+|||||||||+++.|++.+.+..|+|.+.+ .|++ ....
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~-------------~D~~--r~~a-------------- 147 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA-------------ADTF--RAAA-------------- 147 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE-------------ECTT--CHHH--------------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc-------------cccc--cHHH--------------
Confidence 4555678999999999999999999999999998877776543 3321 0011
Q ss_pred CcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHH---HHHHHHccCCCEEEEeCCCC
Q 001329 544 EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL---GMARLFYHKPKFAILDECTS 607 (1099)
Q Consensus 544 ~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRl---aIARAL~~~P~iliLDEpTS 607 (1099)
.+++...++..+++. .+ ..|||+.|++ ++++++..+|+++|+|||..
T Consensus 148 ----~eqL~~~~~~~gl~~----~~---------~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 ----IEQLKIWGERVGATV----IS---------HSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ----HHHHHHHHHHHTCEE----EC---------CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ----HHHHHHHHHHcCCcE----Ee---------cCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 122334455555432 22 4789999999 99999999999999999985
No 152
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.80 E-value=2.2e-09 Score=127.00 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=51.1
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC
Q 001329 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508 (1099)
Q Consensus 446 ~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~ 508 (1099)
.+.+++... .++|+|+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 8 ~l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 8 KFRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp EEEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred ceeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 344555421 3579999999999 9999999999999999999999999999999999864
No 153
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.76 E-value=8.9e-10 Score=115.10 Aligned_cols=120 Identities=14% Similarity=0.034 Sum_probs=71.1
Q ss_pred eEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEecCCCCCc-ccHHHHhccCC
Q 001329 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAV-GTLRDQLIYPL 537 (1099)
Q Consensus 465 sl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~-~Ti~eni~~~~ 537 (1099)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.+ ...+..++|+||++..+. .++.+++.+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57789999999999999999999999999975 45555532 123457899999986554 35555554322
Q ss_pred CCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCC
Q 001329 538 TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605 (1099)
Q Consensus 538 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEp 605 (1099)
...........+.+.+.++.- .. -+-.+..|-+.-++....+|.+++++.|
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g-~~----------------vi~d~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAG-RD----------------VLLEIDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTT-CE----------------EEEECCHHHHHHHHHHCTTCEEEEEECS
T ss_pred eeecccccchHHHHHHHHHcC-Ce----------------EEEEECHHHHHHHHHhCCCcEEEEEECc
Confidence 211111112334555554431 00 1112334444555666677878888777
No 154
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.76 E-value=4.9e-10 Score=137.22 Aligned_cols=158 Identities=15% Similarity=0.143 Sum_probs=102.8
Q ss_pred CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCc-cEEEeCCCC-ccccccEEEEecCCC----------
Q 001329 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS-GHIAKPGVG-SDLNKEIFYVPQRPY---------- 523 (1099)
Q Consensus 456 ~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~-G~I~i~g~~-~~~r~~i~~v~Q~p~---------- 523 (1099)
+...+++++++.+++|+.++|+||||||||||+++|++++++.. |.+.+++.. ......++++||...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~ 124 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREK 124 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHh
Confidence 34578999999999999999999999999999999999999887 788887654 334567888887541
Q ss_pred ------------CC-cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001329 524 ------------TA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1099)
Q Consensus 524 ------------l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1099)
.+ ..++.+|+.............. + ......++...... ...+...+|+|++|++..+
T Consensus 125 ~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~------~~~~~~~L~G~~~~--~~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 125 AKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-A------TGAHAGALLGDVRH--DPFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHTCC-----------CCCEEEECCTTCSSCCEEE-C------TTCCHHHHHCEECC--CCC----CCCCGGGGEECC
T ss_pred hccchhhhhhcccccccccccceeeccccCCCCCEEE-c------CCCCHHhcCceEEe--chhhcCCccccccccccCc
Confidence 11 1122223322111000000000 0 00000111111111 1122246999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 001329 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623 (1099)
Q Consensus 591 RAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~ 623 (1099)
+....++.+|++||... |++..+..+.+.+++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 899999999998874
No 155
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.65 E-value=1.3e-07 Score=101.07 Aligned_cols=166 Identities=13% Similarity=0.033 Sum_probs=85.0
Q ss_pred CCCceeeee-eEEEeCCCEEEEEcCCCCchhHHHHHh-cCcCcCCccEEEeCCCC--ccc---cccEEEEecCCCCCccc
Q 001329 456 TGNVLVENL-TLKVEPGSNLLITGPNGSGKSSLFRVL-GGLWPLVSGHIAKPGVG--SDL---NKEIFYVPQRPYTAVGT 528 (1099)
Q Consensus 456 ~~~~vL~~v-sl~i~~Ge~vaIvG~sGsGKSTLl~lL-~Gl~~p~~G~I~i~g~~--~~~---r~~i~~v~Q~p~l~~~T 528 (1099)
.+-+.|+++ .--+++|+.++|.||||||||||+..+ .+..+...+.+.+++.. .++ ..++++.+|+...
T Consensus 7 tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 7 TGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp CCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHH----
T ss_pred CCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhh----
Confidence 344566766 667999999999999999999996544 45554444444444321 000 0112222221100
Q ss_pred HHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc--cCCCEEEEeCCC
Q 001329 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY--HKPKFAILDECT 606 (1099)
Q Consensus 529 i~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~--~~P~iliLDEpT 606 (1099)
.+++...... .......+. .. .+...-+....+....++.++ .+|+++++|+|+
T Consensus 83 -~~~l~~~~~~---------------------~~~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~ 138 (247)
T 2dr3_A 83 -KGMFAMVDAF---------------------TAGIGKSKE-YE-KYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVT 138 (247)
T ss_dssp -HTSEEEEECS---------------------TTTTCC--C-CC-SCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSG
T ss_pred -CCcEEEEecc---------------------hhhcccccc-cc-cccccCccCHHHHHHHHHHHHHHhCCCEEEECCch
Confidence 0011000000 000000000 00 000000112233333344443 579999999999
Q ss_pred CCC--CHHHHHH----HHHHHHhcCcEEEEEccChhH---------HHhcCEEEEEeC
Q 001329 607 SAV--TTDMEER----FCAKVRAMGTSCITISHRPAL---------VAFHDVVLSLDG 649 (1099)
Q Consensus 607 SaL--D~~~~~~----l~~~l~~~g~TvI~ItH~l~~---------i~~~D~Il~l~~ 649 (1099)
+.+ |+....+ +.+.+++.|+|+|+++|.... ...+|.|+.++.
T Consensus 139 ~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 139 TLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 988 5422222 334455679999999997653 356899999864
No 156
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.56 E-value=1e-07 Score=106.51 Aligned_cols=126 Identities=12% Similarity=0.096 Sum_probs=80.2
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCH
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH 548 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~ 548 (1099)
++|++++++|+|||||||+++.|++.+.+++| +++.++.+|++ ..+..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------~~V~lv~~D~~--r~~a~eqL~-------------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------KKIAFITTDTY--RIAAVEQLK-------------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------CCEEEEECCCS--STTHHHHHH--------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------CEEEEEecCcc--cchHHHHHH--------------
Confidence 47899999999999999999999999988777 25788888874 223333332
Q ss_pred HHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-----
Q 001329 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----- 623 (1099)
Q Consensus 549 ~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~----- 623 (1099)
...+..|+... + ..+ ++..+.+++++ .+|+++|+| |+++|+.....+.++.+-
T Consensus 155 ----~~~~~~gl~~~----~---------~~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~ 212 (296)
T 2px0_A 155 ----TYAELLQAPLE----V---------CYT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPFES 212 (296)
T ss_dssp ----HHHTTTTCCCC----B---------CSS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCT
T ss_pred ----HHHHhcCCCeE----e---------cCC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcC
Confidence 22222232110 0 112 34456777764 999999999 999998665544433221
Q ss_pred cCcEEEEE--ccChhHHHh-cCEE
Q 001329 624 MGTSCITI--SHRPALVAF-HDVV 644 (1099)
Q Consensus 624 ~g~TvI~I--tH~l~~i~~-~D~I 644 (1099)
...+++++ +|....+.. ++++
T Consensus 213 ~~~~~lVl~at~~~~~~~~~~~~~ 236 (296)
T 2px0_A 213 SIQSFLVLSATAKYEDMKHIVKRF 236 (296)
T ss_dssp TEEEEEEEETTBCHHHHHHHTTTT
T ss_pred CCeEEEEEECCCCHHHHHHHHHHH
Confidence 12234444 898765543 4443
No 157
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.56 E-value=2.3e-08 Score=118.20 Aligned_cols=170 Identities=12% Similarity=0.156 Sum_probs=100.3
Q ss_pred CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCcc-EEEeCCCCccccccEEEEecCCCCCcccHHHHhc
Q 001329 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG-HIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI 534 (1099)
Q Consensus 456 ~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G-~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~ 534 (1099)
.+-+.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .|.+ +.-+- ....+.+.+.
T Consensus 188 tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~-------------~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 188 TGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAI-------------FSLEM--SAQQLVMRML 252 (454)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEE-------------EESSS--CHHHHHHHHH
T ss_pred CCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEE-------------EECCC--CHHHHHHHHH
Confidence 345678888888999999999999999999999999987765444 3333 22211 0011111110
Q ss_pred ---cCCCCCCc-CCcCCH---HHHHHHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHc--cCCCEEEEeC
Q 001329 535 ---YPLTSDQE-VEPLTH---GGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFY--HKPKFAILDE 604 (1099)
Q Consensus 535 ---~~~~~~~~-~~~~~~---~~i~~~l~~~~l~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~--~~P~iliLDE 604 (1099)
.+...... ....++ +++.++++.++...+ ++. ...+|++|.+ +.+|.+. ++|+++|+|+
T Consensus 253 ~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d---------~~~~s~~~i~--~~~~~l~~~~~~~livID~ 321 (454)
T 2r6a_A 253 CAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDD---------TPSIRVSDIR--AKCRRLKQESGLGMIVIDY 321 (454)
T ss_dssp HHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEEC---------CTTCCHHHHH--HHHHHHHTTTCCCEEEEEC
T ss_pred HHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEEC---------CCCCCHHHHH--HHHHHHHHHcCCCEEEEcc
Confidence 00000000 001122 233444444322111 111 1368999886 5667776 6899999999
Q ss_pred CCCCCCHH--------HHHHHHHHH----HhcCcEEEEEcc---------C--hh---------HHHhcCEEEEEeCCC
Q 001329 605 CTSAVTTD--------MEERFCAKV----RAMGTSCITISH---------R--PA---------LVAFHDVVLSLDGEG 651 (1099)
Q Consensus 605 pTSaLD~~--------~~~~l~~~l----~~~g~TvI~ItH---------~--l~---------~i~~~D~Il~l~~~g 651 (1099)
++...+.. ....+.+.| ++.|+++|+++| + +. .-..+|.|+.+..+.
T Consensus 322 l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 322 LQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp GGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred HHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 99987431 123333333 356999999999 2 32 234689999998654
No 158
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.53 E-value=9.2e-11 Score=129.45 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=82.6
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEe
Q 001329 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVP 519 (1099)
Q Consensus 446 ~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~ 519 (1099)
+++++.+.|. +..+++++++++++| ++|+||||||||||+++|++... .|.|.+++.+ ...++.+++++
T Consensus 51 ~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 51 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 125 (278)
T ss_dssp HHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHH
Confidence 3445554442 346899999999999 99999999999999999999885 7889887643 11234566777
Q ss_pred cCCC--CCcccHHHHhc-cCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001329 520 QRPY--TAVGTLRDQLI-YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1099)
Q Consensus 520 Q~p~--l~~~Ti~eni~-~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1099)
|++. .+..++.|++. ++........ ...++..+.+ .++. .+|||||+||+.+++|+..+
T Consensus 126 ~~~~~~~~~i~~iDeid~l~~~~~~~~~-~~~~~~~~~~---------~~ll--------~~lsgg~~~~~~i~~a~t~~ 187 (278)
T 1iy2_A 126 ETAKRHAPCIVFIDEIDAVGRKRGSGVG-GGNDEREQTL---------NQLL--------VEMDGFEKDTAIVVMAATNR 187 (278)
T ss_dssp HHHHTSCSEEEEEETHHHHHCC---------CHHHHHHH---------HHHH--------HHHTTCCTTCCEEEEEEESC
T ss_pred HHHHhcCCcEEehhhhHhhhcccccccC-CcchHHHHHH---------HHHH--------HHHhCCCCCCCEEEEEecCC
Confidence 7653 22335555552 2211100000 0011111221 1111 25899999999999999999
Q ss_pred CCE
Q 001329 597 PKF 599 (1099)
Q Consensus 597 P~i 599 (1099)
|++
T Consensus 188 p~~ 190 (278)
T 1iy2_A 188 PDI 190 (278)
T ss_dssp TTS
T ss_pred chh
Confidence 986
No 159
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.52 E-value=3.1e-09 Score=126.63 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=89.2
Q ss_pred eeeEEEeCCCEEEEEcCCCCchhHHHHHhcC--cCcCCccEEEeCCCC---ccccccEEEEecCCCCCc---ccHH---H
Q 001329 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGG--LWPLVSGHIAKPGVG---SDLNKEIFYVPQRPYTAV---GTLR---D 531 (1099)
Q Consensus 463 ~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~G--l~~p~~G~I~i~g~~---~~~r~~i~~v~Q~p~l~~---~Ti~---e 531 (1099)
.+++++.++.+++|.|+|||||||+++.|.. ++.++.|++.+.+.| .++.. ...-|++.. .... +
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~----~~~lPhl~~~Vvtd~~~a~~ 234 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSV----YEGIPHLLTEVVTDMKDAAN 234 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGG----GTTCTTBSSSCBCSHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhh----hccCCcccceeecCHHHHHH
Confidence 4678888999999999999999999999876 566666766554333 11100 000011110 0111 1
Q ss_pred HhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHH----------HHHHHHccCCC-EE
Q 001329 532 QLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL----------GMARLFYHKPK-FA 600 (1099)
Q Consensus 532 ni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRl----------aIARAL~~~P~-il 600 (1099)
.+... ..+-+++ .+.++.+|+.++.+.... ....+|+||+|+. ++|+++...|. ++
T Consensus 235 ~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~-----~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 235 ALRWC-------VNEMERR-YKLMSALGVRNLAGYNEK-----IAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHH-----HHHHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHH-----HHHHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 11000 0001111 245666666543221000 0025789988763 46777788898 88
Q ss_pred EEeCCCCCCCHHH---HHHHHHHHH---hcCcEEEEEccChh
Q 001329 601 ILDECTSAVTTDM---EERFCAKVR---AMGTSCITISHRPA 636 (1099)
Q Consensus 601 iLDEpTSaLD~~~---~~~l~~~l~---~~g~TvI~ItH~l~ 636 (1099)
++||+++.+|... +..+.++.+ +.|.++|++|||++
T Consensus 302 vIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 9999999887432 222333322 34899999999988
No 160
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.47 E-value=5.2e-09 Score=108.60 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=32.5
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 001329 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623 (1099)
Q Consensus 585 QRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~ 623 (1099)
+...+|++++.+|+++++| |||+|.....++++.+.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999998887653
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.47 E-value=1.3e-10 Score=126.33 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=84.4
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------ccccccEEEEe
Q 001329 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVP 519 (1099)
Q Consensus 446 ~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~~r~~i~~v~ 519 (1099)
+++++.+.|. +..+++++++++++| ++|+||||||||||+++|++... .|.|.++|.+ ...++.++.++
T Consensus 27 ~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 101 (254)
T 1ixz_A 27 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 101 (254)
T ss_dssp HHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHH
Confidence 4455554442 346899999999999 99999999999999999999875 7888887643 11223466677
Q ss_pred cCCC--CCcccHHHHh-ccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001329 520 QRPY--TAVGTLRDQL-IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1099)
Q Consensus 520 Q~p~--l~~~Ti~eni-~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1099)
|+.. .+..++.|++ .++........ ...++..+.+ +.+. .+|||||+||+.+++|+..+
T Consensus 102 ~~~~~~~~~i~~~Deid~l~~~~~~~~~-~~~~~~~~~~---------~~ll--------~~l~g~~~~~~~i~~a~t~~ 163 (254)
T 1ixz_A 102 ETAKRHAPCIVFIDEIDAVGRKRGSGVG-GGNDEREQTL---------NQLL--------VEMDGFEKDTAIVVMAATNR 163 (254)
T ss_dssp HHHTTSSSEEEEEETHHHHHC----------CHHHHHHH---------HHHH--------HHHHTCCTTCCEEEEEEESC
T ss_pred HHHHhcCCeEEEehhhhhhhcccCcccc-ccchHHHHHH---------HHHH--------HHHhCCCCCCCEEEEEccCC
Confidence 7643 1223444554 22211100000 0011111111 1111 15899999999999999999
Q ss_pred CCEEEEeCCC
Q 001329 597 PKFAILDECT 606 (1099)
Q Consensus 597 P~iliLDEpT 606 (1099)
|++ +|++.
T Consensus 164 p~~--ld~~l 171 (254)
T 1ixz_A 164 PDI--LDPAL 171 (254)
T ss_dssp GGG--SCGGG
T ss_pred chh--CCHHH
Confidence 987 57655
No 162
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.47 E-value=4e-09 Score=113.40 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=49.9
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCc--------------
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------------- 509 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-------------- 509 (1099)
.|+++|+...+. . ++++++ ++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 9 ~l~l~~~~~~~~-------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (227)
T 1qhl_A 9 SLTLINWNGFFA-------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHG 79 (227)
T ss_dssp EEEEEEETTEEE-------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGG
T ss_pred EEEEEeeecccC-------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhh
Confidence 478888765431 1 566667 89999999999999999999999999999999988541
Q ss_pred cccccEEEEecC
Q 001329 510 DLNKEIFYVPQR 521 (1099)
Q Consensus 510 ~~r~~i~~v~Q~ 521 (1099)
..+..++|++|+
T Consensus 80 ~~~~~i~~v~~~ 91 (227)
T 1qhl_A 80 KLKAGVCYSMLD 91 (227)
T ss_dssp GBCSSEEEEEEE
T ss_pred HhhcCcEEEEEe
Confidence 124678888874
No 163
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.43 E-value=7.8e-10 Score=127.47 Aligned_cols=142 Identities=17% Similarity=0.119 Sum_probs=85.5
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEe-CCCCccccccEEEEecCCCCCcccHHHHhccCC
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK-PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPL 537 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i-~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~ 537 (1099)
.+++++|+.+++|+.++|+||||||||||+++|+|.. +|++.. ++.+..++..++++||+..++ .|++....
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~~~~~~~~~~lg~~~q~~~~l----~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPLDRLNFELGVAIDQFLVV----FEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSCTTTHHHHHGGGTTCSCEE----ETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEeccchhHHHHHHHhcchhHHH----HHHHHHHH
Confidence 6899999999999999999999999999999999964 688776 332222233477778876432 22333222
Q ss_pred CCCCcCCcCC----HHHHHHHHHh---cCCh----hHHhc-CCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE-EeC
Q 001329 538 TSDQEVEPLT----HGGMVELLKN---VDLE----YLLDR-YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI-LDE 604 (1099)
Q Consensus 538 ~~~~~~~~~~----~~~i~~~l~~---~~l~----~~~~~-~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili-LDE 604 (1099)
.......... +..+.+.++. +.+. +.++. ++.+........+++|++||++.+.+++.+|++++ ||+
T Consensus 230 ~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~ 309 (377)
T 1svm_A 230 GESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLER 309 (377)
T ss_dssp TTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHT
T ss_pred HHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeC
Confidence 1000000001 0112223321 0000 00000 01111111234689999999999988999999998 999
Q ss_pred CCC
Q 001329 605 CTS 607 (1099)
Q Consensus 605 pTS 607 (1099)
|+.
T Consensus 310 ~~~ 312 (377)
T 1svm_A 310 SEF 312 (377)
T ss_dssp CTH
T ss_pred CHH
Confidence 997
No 164
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.30 E-value=5.2e-07 Score=103.05 Aligned_cols=131 Identities=16% Similarity=0.190 Sum_probs=74.9
Q ss_pred CCCceeeeeeE--EEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHh
Q 001329 456 TGNVLVENLTL--KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQL 533 (1099)
Q Consensus 456 ~~~~vL~~vsl--~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni 533 (1099)
.+.+-|+.+-= -+++|+++.|.||+|||||||+..++.......| .+.|+.-+... .
T Consensus 44 TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~-------------~vlyi~~E~~~-~------- 102 (349)
T 2zr9_A 44 TGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG-------------IAAFIDAEHAL-D------- 102 (349)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC-------------CEEEEESSCCC-C-------
T ss_pred cCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-------------eEEEEECCCCc-C-------
Confidence 34444554322 5889999999999999999998888765443322 24444433211 0
Q ss_pred ccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC--CCEEEEeCCCCCC--
Q 001329 534 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK--PKFAILDECTSAV-- 609 (1099)
Q Consensus 534 ~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~--P~iliLDEpTSaL-- 609 (1099)
.. .++.+|... ++.. .. ...++ .|-+.++++++.+ |+++|+||+++.+
T Consensus 103 --------------~~----~a~~lG~~~--~~l~----i~--~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~ 154 (349)
T 2zr9_A 103 --------------PE----YAKKLGVDT--DSLL----VS--QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPR 154 (349)
T ss_dssp --------------HH----HHHHTTCCG--GGCE----EE--CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCH
T ss_pred --------------HH----HHHHcCCCH--HHeE----Ee--cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcch
Confidence 00 122233220 1100 00 01132 3456778888755 9999999999998
Q ss_pred --------CH---HH----HHHHHH---HHHhcCcEEEEEccCh
Q 001329 610 --------TT---DM----EERFCA---KVRAMGTSCITISHRP 635 (1099)
Q Consensus 610 --------D~---~~----~~~l~~---~l~~~g~TvI~ItH~l 635 (1099)
|+ .. .+.+.+ .+++.|+|+|+++|-.
T Consensus 155 ~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~ 198 (349)
T 2zr9_A 155 AEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELR 198 (349)
T ss_dssp HHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred hhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 32 11 112222 2356799999999953
No 165
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.28 E-value=1.4e-08 Score=107.73 Aligned_cols=120 Identities=15% Similarity=0.105 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcC---cCCccEEEe--------CCCC-------ccccccEEEEecCCC------CC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLW---PLVSGHIAK--------PGVG-------SDLNKEIFYVPQRPY------TA 525 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~---~p~~G~I~i--------~g~~-------~~~r~~i~~v~Q~p~------l~ 525 (1099)
.+.+++|+|||||||||++++|++.+ .+++|.+.. +|.+ .++++++++++|++. +.
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999876 778898876 5643 135678899998763 22
Q ss_pred cccHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCc----ccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001329 526 VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEK----EINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1099)
Q Consensus 526 ~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~----~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1099)
..++.+++. ++++..++..+...+.+.....+. ....|.-++|+ .++++++.+++++|
T Consensus 84 ~~~v~~~~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i 145 (227)
T 1cke_A 84 GEDVSGEIR-------------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKI 145 (227)
T ss_dssp TEECHHHHT-------------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEE
T ss_pred CeeCchhhC-------------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEE
Confidence 334545432 234555555555554433211100 01123346665 34556778899999
Q ss_pred EeCCCC
Q 001329 602 LDECTS 607 (1099)
Q Consensus 602 LDEpTS 607 (1099)
+++++.
T Consensus 146 ~l~~~~ 151 (227)
T 1cke_A 146 FLDASS 151 (227)
T ss_dssp EEECCH
T ss_pred EEeCCH
Confidence 888753
No 166
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.27 E-value=5.1e-08 Score=106.22 Aligned_cols=54 Identities=24% Similarity=0.285 Sum_probs=47.3
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhc---CcCcCCccEEE--------eCCCC-------ccccccEEEEecCC
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLG---GLWPLVSGHIA--------KPGVG-------SDLNKEIFYVPQRP 522 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~---Gl~~p~~G~I~--------i~g~~-------~~~r~~i~~v~Q~p 522 (1099)
++|++++|+|||||||||++++|+ |+..|++|.|. .+|.+ .++++.+++++|++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 99999999998 77754 24567899999764
No 167
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.27 E-value=6.8e-08 Score=105.32 Aligned_cols=53 Identities=17% Similarity=0.340 Sum_probs=36.2
Q ss_pred CcEEEEee-EEEcCCCCceeeeeeEEEeC---CCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 443 NYIEFSGV-KVVTPTGNVLVENLTLKVEP---GSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 443 ~~I~~~~v-~~~y~~~~~vL~~vsl~i~~---Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+.++++|+ ++.|.++.++|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46899999 99995567899999999999 9999999999999999999999855
No 168
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.23 E-value=8.3e-08 Score=111.05 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=91.9
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcC------------cCcCCccEEEeCCCC-------cccccc---EEEEecCCCC
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLGG------------LWPLVSGHIAKPGVG-------SDLNKE---IFYVPQRPYT 524 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~G------------l~~p~~G~I~i~g~~-------~~~r~~---i~~v~Q~p~l 524 (1099)
.+++|..++|+|+||+|||||+++|+| ..+|+.|.+.++|.. ..-++. ...+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 667999999998732 011122 2355666643
Q ss_pred Ccc-cHHHHhccCCCCCCcCCcCCHHHHHHHHHhcCC-hhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC--CEE
Q 001329 525 AVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP--KFA 600 (1099)
Q Consensus 525 ~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~l-~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P--~il 600 (1099)
..+ +..++ .. ......++.++. -..++... + .....+||+. +| ++.
T Consensus 96 ~~~~s~~e~-------------L~-~~fl~~ir~~d~il~Vvd~~~-d---~~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 96 TKGASTGVG-------------LG-NAFLSHVRAVDAIYQVVRAFD-D---AEIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CCCCCSSSS-------------SC-HHHHHHHTTCSEEEEEEECCC-T---TCSSCCSSSS------------CHHHHHH
T ss_pred ccCCcHHHH-------------HH-HHHHHHHHHHHHHHHHHhccc-c---ceeeeecccc------------Ccchhhh
Confidence 221 11111 11 112222222221 11111111 0 0112356553 89 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEccChhHHH-hcCEEE-EEeC
Q 001329 601 ILDECTSAVTTDMEERFCAKVRAM----GTSCITISHRPALVA-FHDVVL-SLDG 649 (1099)
Q Consensus 601 iLDEpTSaLD~~~~~~l~~~l~~~----g~TvI~ItH~l~~i~-~~D~Il-~l~~ 649 (1099)
++|||++.+|+...++..+.+++. |.|+ ++|.+..+. .+|++. .|++
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~ 198 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTE 198 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHT
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhcc
Confidence 999999999999988777665443 6665 399887664 567776 5554
No 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.23 E-value=1.4e-07 Score=108.42 Aligned_cols=143 Identities=18% Similarity=0.085 Sum_probs=79.0
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCc-----------CCccEEEeCCCCccccccEEEEecCCCCCc---ccHHHHhccCCC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWP-----------LVSGHIAKPGVGSDLNKEIFYVPQRPYTAV---GTLRDQLIYPLT 538 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~-----------p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~---~Ti~eni~~~~~ 538 (1099)
+++|+|++|||||||++.|+|... |+.|+|.++|.+-.+....|++.|.|.-.. .+..+.+.....
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~ 260 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDA 260 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCE
Confidence 389999999999999999999765 677899988843122223455554332110 111222211100
Q ss_pred C-C--CcCCcC--CHH---HHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH----HHH-ccCCCEEEEeCC
Q 001329 539 S-D--QEVEPL--THG---GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA----RLF-YHKPKFAILDEC 605 (1099)
Q Consensus 539 ~-~--~~~~~~--~~~---~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA----RAL-~~~P~iliLDEp 605 (1099)
. . ...... .++ .+.+.++.+++.+ .|.-...+..+.+|+|++||+.++ +++ ..+|++ +|
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~----~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~ 332 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREIGVSG----KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IP 332 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS----CCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EE
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHhCcCC----CCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EE
Confidence 0 0 000001 111 2345555555432 120000112235788899988887 666 445555 89
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 001329 606 TSAVTTDMEERFCAKVRA 623 (1099)
Q Consensus 606 TSaLD~~~~~~l~~~l~~ 623 (1099)
||++|......+.+.+.+
T Consensus 333 ~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp CBTTTTBSHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHH
Confidence 999999888887776654
No 170
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.16 E-value=1.1e-06 Score=89.91 Aligned_cols=102 Identities=15% Similarity=0.085 Sum_probs=65.5
Q ss_pred ee--eeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC------------ccccccEEEEecCCCCC
Q 001329 460 LV--ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------------SDLNKEIFYVPQRPYTA 525 (1099)
Q Consensus 460 vL--~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------------~~~r~~i~~v~Q~p~l~ 525 (1099)
.+ +++++++.+| +++|+||||||||||+++|.++..+..|.....+.. ...+..|.+++|+|...
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~ 92 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRG 92 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcc
Confidence 45 7889999999 999999999999999999999888777654322210 02345799999987421
Q ss_pred ---c---ccHHHHhccC-CCCC-CcCCcCCHHHHHHHHHhcCChh
Q 001329 526 ---V---GTLRDQLIYP-LTSD-QEVEPLTHGGMVELLKNVDLEY 562 (1099)
Q Consensus 526 ---~---~Ti~eni~~~-~~~~-~~~~~~~~~~i~~~l~~~~l~~ 562 (1099)
. -+|...+... .... -.......+++.++++.+++..
T Consensus 93 ~~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~ 137 (182)
T 3kta_A 93 FPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISP 137 (182)
T ss_dssp SSSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCT
T ss_pred cccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCC
Confidence 1 1222222110 0000 0011235678889999888863
No 171
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.13 E-value=5.2e-07 Score=93.96 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=38.5
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCcc-EEEeCCCC--ccccccEEEEecCC
Q 001329 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG-HIAKPGVG--SDLNKEIFYVPQRP 522 (1099)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G-~I~i~g~~--~~~r~~i~~v~Q~p 522 (1099)
+++++|++++|+|||||||||++++|++++.|+.| .+...... ......+++++|++
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 60 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTR 60 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCH
Confidence 36889999999999999999999999999977666 22111111 01122467777765
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.07 E-value=9e-08 Score=100.20 Aligned_cols=49 Identities=29% Similarity=0.356 Sum_probs=42.9
Q ss_pred CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEE--EeCC
Q 001329 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI--AKPG 506 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I--~i~g 506 (1099)
.....+..++..++|++++|+|||||||||++++|++.++ ..|.+ .++|
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 3456778888889999999999999999999999999987 77887 7776
No 173
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.03 E-value=2.7e-07 Score=95.89 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=29.7
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 001329 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623 (1099)
Q Consensus 587 laIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~ 623 (1099)
...|++++.+|++.++| |||+|.....++++.+.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999988888776543
No 174
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.02 E-value=4.2e-06 Score=99.25 Aligned_cols=112 Identities=19% Similarity=0.312 Sum_probs=73.2
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCC
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 538 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~ 538 (1099)
..++++++.+++| +.|+||+|+|||||+|+|++.... .+..+.- .
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------~f~~is~---------~-------- 83 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------PFFHISG---------S-------- 83 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------CEEEEEG---------G--------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------CeeeCCH---------H--------
Confidence 3556677777777 899999999999999999984310 1111100 0
Q ss_pred CCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC----------C
Q 001329 539 SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS----------A 608 (1099)
Q Consensus 539 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTS----------a 608 (1099)
++.+.+. =.|++++|-.+++|....|.+|++||+.+ +
T Consensus 84 -----------------------~~~~~~~----------g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g 130 (476)
T 2ce7_A 84 -----------------------DFVELFV----------GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG 130 (476)
T ss_dssp -----------------------GTTTCCT----------THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-------
T ss_pred -----------------------HHHHHHh----------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCc
Confidence 0000111 13678999999999999999999999944 5
Q ss_pred CCHHHHHHHHHHHH-------hcCcEEEEEccChhHH
Q 001329 609 VTTDMEERFCAKVR-------AMGTSCITISHRPALV 638 (1099)
Q Consensus 609 LD~~~~~~l~~~l~-------~~g~TvI~ItH~l~~i 638 (1099)
.|.+.+..+.+++. ..+..+|.+||+++.+
T Consensus 131 ~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 131 GHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp --CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 56555444444432 2367899999998654
No 175
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.01 E-value=6.2e-07 Score=94.21 Aligned_cols=65 Identities=15% Similarity=0.366 Sum_probs=46.2
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcCcCc-------------CCccEEEeCCCC------ccccccEEEEecCCCCCc
Q 001329 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-------------LVSGHIAKPGVG------SDLNKEIFYVPQRPYTAV 526 (1099)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-------------p~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~ 526 (1099)
+...+|+.++|+||||||||||++.|++.++ |..|+ ++|.+ .++++. +.|+.++..
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~---i~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRN---ISANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHH---HHTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhh---hhhhhhhhh
Confidence 3345899999999999999999999999886 56676 56654 122222 356666777
Q ss_pred ccHHHHhccC
Q 001329 527 GTLRDQLIYP 536 (1099)
Q Consensus 527 ~Ti~eni~~~ 536 (1099)
+++.+| .||
T Consensus 89 ~~~~~n-~YG 97 (197)
T 3ney_A 89 GSYQGN-MFG 97 (197)
T ss_dssp EEETTE-EEE
T ss_pred hhhhce-ecc
Confidence 777777 355
No 176
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.99 E-value=1.7e-06 Score=89.46 Aligned_cols=30 Identities=37% Similarity=0.668 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCcCcCCcc
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G 500 (1099)
|++++|+||||||||||+++|+|++++..|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 678999999999999999999999984433
No 177
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.99 E-value=9.3e-06 Score=92.16 Aligned_cols=132 Identities=15% Similarity=0.074 Sum_probs=84.5
Q ss_pred CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccC
Q 001329 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1099)
+-+-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....+ .+.|+.=+ ++. +++
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------~Vl~fSlE-----ms~-~ql--- 89 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------GVAVFSLE-----MSA-EQL--- 89 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------EEEEEESS-----SCH-HHH---
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------eEEEEeCC-----CCH-HHH---
Confidence 44567777667999999999999999999999888765433222 34443321 010 000
Q ss_pred CCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001329 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1099)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~ 616 (1099)
..++......+++..+... .||.+++||++.|...+.+++++|.|+|...+| +....
T Consensus 90 -----------~~Rlls~~~~v~~~~l~~g-----------~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-~i~~~ 146 (338)
T 4a1f_A 90 -----------ALRALSDLTSINMHDLESG-----------RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-QIRLQ 146 (338)
T ss_dssp -----------HHHHHHHHHCCCHHHHHHT-----------CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-HHHHH
T ss_pred -----------HHHHHHHhhCCCHHHHhcC-----------CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-HHHHH
Confidence 1122223333444444331 699999999999999999999999999875543 12223
Q ss_pred HHHHHHhc-CcEEEEEcc
Q 001329 617 FCAKVRAM-GTSCITISH 633 (1099)
Q Consensus 617 l~~~l~~~-g~TvI~ItH 633 (1099)
+.++.++. |..+|+|-|
T Consensus 147 ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 147 LRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHhcCCCCEEEEec
Confidence 33344455 788888853
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.98 E-value=8e-07 Score=109.91 Aligned_cols=128 Identities=13% Similarity=0.061 Sum_probs=80.2
Q ss_pred eEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcC--CccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhccC
Q 001329 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1099)
Q Consensus 465 sl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p--~~G~I~i~g~~------~~~r~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1099)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| .+|.. .+.++.+++.+|.+.++..++..||...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456789999999999999999999999987655 67877 55532 1223456666666554443333333211
Q ss_pred CCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001329 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1099)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~ 616 (1099)
. |.. .++ . .....+-..++.++++| |++++|+.++..
T Consensus 82 p---------------------G~~----------------~f~-~----~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~ 118 (665)
T 2dy1_A 82 P---------------------GYG----------------DFV-G----EIRGALEAADAALVAVS-AEAGVQVGTERA 118 (665)
T ss_dssp C---------------------CSG----------------GGH-H----HHHHHHHHCSEEEEEEE-TTTCSCHHHHHH
T ss_pred C---------------------Ccc----------------chH-H----HHHHHHhhcCcEEEEEc-CCcccchhHHHH
Confidence 0 000 111 0 11111224677888889 999999888754
Q ss_pred HHHHHHhcCcEEEEEccChhH
Q 001329 617 FCAKVRAMGTSCITISHRPAL 637 (1099)
Q Consensus 617 l~~~l~~~g~TvI~ItH~l~~ 637 (1099)
+ +.+++.+..+|++.|.++.
T Consensus 119 ~-~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 119 W-TVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp H-HHHHHTTCCEEEEEECGGG
T ss_pred H-HHHHHccCCEEEEecCCch
Confidence 4 4445568889999998775
No 179
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.96 E-value=2.3e-07 Score=104.59 Aligned_cols=128 Identities=15% Similarity=0.080 Sum_probs=71.5
Q ss_pred ceeeeeeEEEeCCC------EEEEEcCCCCchhHHHHHhcCcCcC--CccEEEeCCCCccccccEEEEecCCCCCcccHH
Q 001329 459 VLVENLTLKVEPGS------NLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR 530 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge------~vaIvG~sGsGKSTLl~lL~Gl~~p--~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~ 530 (1099)
+.+++++..+.+++ ++||+||||||||||+++|.+++.+ ++| .++++++|.+.......
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~-------------~v~~i~~D~f~~~~~~l 140 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP-------------NVEVITTDGFLYSNAKL 140 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC-------------CEEEEEGGGGBCCHHHH
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC-------------eEEEEeecccccchhhh
Confidence 45555666665555 8999999999999999999999874 333 35677777754433222
Q ss_pred HHhccCCCCCCcCCcCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 001329 531 DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609 (1099)
Q Consensus 531 eni~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaL 609 (1099)
+...... ..+.....+.+.+.+.++.+.-.+ -+ ..| .+|-+..+|+..+...+..|+++|+|.+..-.
T Consensus 141 ~~~~~~~-~~g~P~~~D~~~l~~~L~~L~~g~~~v-~~P---------~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~ 209 (321)
T 3tqc_A 141 EKQGLMK-RKGFPESYDMPSLLRVLNAIKSGQRNV-RIP---------VYSHHYYDIVRGQYEIVDQPDIVILEGLNILQ 209 (321)
T ss_dssp HHTTCGG-GTTSGGGBCHHHHHHHHHHHHTTCSSE-EEE---------EEETTTTEEEEEEEEEECSCSEEEEECTTTTC
T ss_pred hhHHHHh-hccCcccccHHHHHHHHHhhhcccccc-ccc---------hhhhhccccccCceeeccCCCEEEEEcccccc
Confidence 2211000 001111234445555554432111 00 011 23333334443233456789999999998766
Q ss_pred C
Q 001329 610 T 610 (1099)
Q Consensus 610 D 610 (1099)
|
T Consensus 210 ~ 210 (321)
T 3tqc_A 210 T 210 (321)
T ss_dssp C
T ss_pred c
Confidence 5
No 180
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.93 E-value=3.1e-06 Score=88.53 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=74.1
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCHHHHH
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~ 552 (1099)
+++|+|++||||||+.+.|+++ |...+++- .+...+..+. ...+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d--------------------~~~~~~~~~~----------~~~~~ 48 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDAD--------------------VVAREVVAKD----------SPLLS 48 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHH--------------------HHHHHTTCSS----------CHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchH--------------------HHHHHHccCC----------hHHHH
Confidence 6899999999999999999983 44333321 0111111110 01233
Q ss_pred HHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-cCcEEEEE
Q 001329 553 ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-MGTSCITI 631 (1099)
Q Consensus 553 ~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~-~g~TvI~I 631 (1099)
++.+..|.. .-.+.|+.+|..+++.+..+|+..-.+ ++.++|.....+.+.+.+ .+.++|+-
T Consensus 49 ~i~~~~g~~---------------~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~ 111 (206)
T 1jjv_A 49 KIVEHFGAQ---------------ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFV 111 (206)
T ss_dssp HHHHHHCTT---------------CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEE
T ss_pred HHHHHhCHH---------------HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEE
Confidence 344433321 124678999999999998888654332 345667766666666654 35688888
Q ss_pred ccChhHH---HhcCEEEEEeC
Q 001329 632 SHRPALV---AFHDVVLSLDG 649 (1099)
Q Consensus 632 tH~l~~i---~~~D~Il~l~~ 649 (1099)
+|.+... ..+|.+++++-
T Consensus 112 ~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 112 VPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp CTTTTTTTCGGGCSEEEEEEC
T ss_pred echhhhcCcHhhCCEEEEEEC
Confidence 8876543 56899999975
No 181
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.93 E-value=6.8e-06 Score=86.06 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=40.8
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcc
Q 001329 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIY 535 (1099)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~ 535 (1099)
=++++|++++|+|++||||||+++.|++.++ .+.+++||++++.+ +|+..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------~~~~i~~D~~~~~~---~~~~~ 65 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------NCSVISQDDFFKPE---SEIET 65 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------TEEEEEGGGGBCCG---GGSCB
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------CcEEEeCCccccCH---hHhhc
Confidence 3567899999999999999999999999875 27799999887654 45543
No 182
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.90 E-value=8.3e-06 Score=93.26 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=46.4
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHHh-c-CcEEEEEc--cChh
Q 001329 578 ELSLGEQQRLGMARLFYHKPKFAILD-ECTSAVTTDMEERFCAKVRA-M-GTSCITIS--HRPA 636 (1099)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLD-EpTSaLD~~~~~~l~~~l~~-~-g~TvI~It--H~l~ 636 (1099)
.+|+||+|++. +.+...++-++++| ++++++|.+.+..+.+.+.+ . +..+|+|. ||+.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 68999999887 66666788889999 99999999888777766554 2 78888888 7764
No 183
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.84 E-value=5.1e-06 Score=86.67 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=24.8
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
..+++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999765
No 184
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.83 E-value=0.0011 Score=80.66 Aligned_cols=289 Identities=12% Similarity=0.114 Sum_probs=161.1
Q ss_pred HHhhHHHHHHHhcCCcchhHHhhcCHHHHHHHHHH-HHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCC
Q 001329 769 VSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGV-SVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLR-KNS 846 (1099)
Q Consensus 769 v~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~-~~~~~~~~s~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~-~~~ 846 (1099)
+.-+.+.+...-+-+.++..++......+...++. +++..+...+.+..-.|+..+++.+...+|.+.+++..++ +..
T Consensus 35 ~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ 114 (582)
T 3b5x_A 35 VINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVR 114 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 44444554444444555555543221122222221 2222222333444444555555555555555555555554 334
Q ss_pred ceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHhhcCCcc
Q 001329 847 FYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEF 926 (1099)
Q Consensus 847 yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~~~P~f 926 (1099)
||.= .+..+-=.++|+|++...+.+++...++..-++-++.+..-+.. +.+.-.++++..+.+...+.+.+.+..
T Consensus 115 ~~~~----~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~l~li~l~~~~l~~~~~~~~~~~~ 189 (582)
T 3b5x_A 115 FFDQ----ESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFW-NSWQLSLVLIVVAPVVAFAISFVSKRF 189 (582)
T ss_pred HHCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4431 12223346899999988777666555555544444444333332 222222222223333333445555566
Q ss_pred hhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccchhhhh
Q 001329 927 GDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWG 1006 (1099)
Q Consensus 927 g~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~ 1006 (1099)
.+...+.++..+++-..-.-.+.+.++|--|+.++.+.+..++..++..+...+..+...+...+-+++.--. .++.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~ 268 (582)
T 3b5x_A 190 RKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLA-LFAVLF 268 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 6677777777777766667788999999999999999999999998888888777777777766666553222 111111
Q ss_pred hhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q 001329 1007 LSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELL 1073 (1099)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~~k~~~~laG~t~Rv~el~~~l 1073 (1099)
+.+..+. .+. -+.+++.--..+. ......+..+...+.++.+-.....|+.|+++.-
T Consensus 269 ~g~~~v~--~g~----lt~g~l~~~~~~~----~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~ 325 (582)
T 3b5x_A 269 LASVDSI--RAE----LTPGTFTVVFSAM----FGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLE 325 (582)
T ss_pred HHHHHHH--cCC----CCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1111111 121 1133443222222 2356788889999999999999999999887643
No 185
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.82 E-value=7.9e-06 Score=102.70 Aligned_cols=62 Identities=18% Similarity=0.072 Sum_probs=48.6
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHh---cCcEEEE-EccChhHHH
Q 001329 578 ELSLGEQQRLGMARLFYHKPKFAILDECTS-AVTTDMEERFCAKVRA---MGTSCIT-ISHRPALVA 639 (1099)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEpTS-aLD~~~~~~l~~~l~~---~g~TvI~-ItH~l~~i~ 639 (1099)
-+|+|+.+|..++++++.+++++|+|||+. +||.+....+++.+.+ ...++++ .||+.+.+.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 589999999999999999999999999997 9998766655554432 2345666 489877654
No 186
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.81 E-value=7.1e-06 Score=93.77 Aligned_cols=47 Identities=23% Similarity=0.168 Sum_probs=37.0
Q ss_pred CCCceeeeeeE--EEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEE
Q 001329 456 TGNVLVENLTL--KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502 (1099)
Q Consensus 456 ~~~~vL~~vsl--~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I 502 (1099)
.+.+.|+.+-= -+++|+++.|.||+|||||||+..+++...+..|.+
T Consensus 44 TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 44 TGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp CSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 34444555432 589999999999999999999999999887766654
No 187
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.80 E-value=2.2e-07 Score=110.84 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=78.7
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC--c----cccccEEEEecCCCC--CcccH
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--S----DLNKEIFYVPQRPYT--AVGTL 529 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~----~~r~~i~~v~Q~p~l--~~~Ti 529 (1099)
..+++++++++++| ++|+||+|||||||+++|++... .|.+.+++.+ . ...+++..++|+..- +.-.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 35788999999999 99999999999999999999875 6788887743 1 112345566776531 22244
Q ss_pred HHHhc-cCCCCCCcCCcCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001329 530 RDQLI-YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1099)
Q Consensus 530 ~eni~-~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTS 607 (1099)
.|+|. ++........ ...++..+.+. .++. +|||||+|+..|++|...+|++ ||||.-
T Consensus 129 IDEId~l~~~r~~~~~-~~~~e~~~~l~-----~LL~------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVG-GGNDEREQTLN-----QLLV------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EECGGGTCCCSSSSTT-TSSHHHHHHHH-----HHHH------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EehHHHHHHhhccCcC-CCcHHHHHHHH-----HHHH------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 44442 2211100000 01111112211 1111 4789999998899999999987 787764
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.78 E-value=4.3e-05 Score=87.33 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=34.3
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcC--cCcCCccEEEe
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG--LWPLVSGHIAK 504 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~G--l~~p~~G~I~i 504 (1099)
.+|++++++++ .++|+|++|||||||++.|.| +.|+.+|.+..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~ 69 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR 69 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccC
Confidence 57899999998 899999999999999999999 77888886643
No 189
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.77 E-value=5.7e-06 Score=93.34 Aligned_cols=48 Identities=13% Similarity=0.247 Sum_probs=42.9
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC
Q 001329 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508 (1099)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~ 508 (1099)
++++||++++|++++|+|+||+||||++..|++.+.+..|+|.+.+.|
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 467888899999999999999999999999999999999999886654
No 190
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.76 E-value=0.001 Score=80.88 Aligned_cols=288 Identities=11% Similarity=0.088 Sum_probs=165.9
Q ss_pred HHhhHHHHHHHhcCCcchhHHhhcCHHHHHHHHHH-HHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCC
Q 001329 769 VSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGV-SVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLR-KNS 846 (1099)
Q Consensus 769 v~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~-~~~~~~~~s~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~-~~~ 846 (1099)
+.-+.+.+...-+-+.++..++..+...+...++. +++..+..++.+..-.|...+++.+...+|.+.+++..++ +..
T Consensus 35 ~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~ 114 (582)
T 3b60_A 35 ILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVA 114 (582)
T ss_dssp HHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 44455555544445555555443222222222211 2222222334444444555666666666666666666665 445
Q ss_pred ceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHhhcCCcc
Q 001329 847 FYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEF 926 (1099)
Q Consensus 847 yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~~~P~f 926 (1099)
||.= .+..+-=.++|+|++...+.+++....+..-++-++.+..-+.. +.+.-.++++..+.+...+.+.+.+..
T Consensus 115 ~~~~----~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~l~li~l~~~~l~~~~~~~~~~~~ 189 (582)
T 3b60_A 115 FFDK----QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFY-YSWQLSIILVVLAPIVSIAIRVVSKRF 189 (582)
T ss_dssp HHHH----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCC----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5541 11222336889999988777766666555555555544444433 333333333333333334445555556
Q ss_pred hhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccchhhhh
Q 001329 927 GDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWG 1006 (1099)
Q Consensus 927 g~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~ 1006 (1099)
.+...+.++..+++-..=...+.+.++|--|+..+.|....++..++..+...+..+...++..+-+++.--. .++.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 268 (582)
T 3b60_A 190 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA-LAFVLY 268 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 6677777777676666666778899999999999999999999999888888777777777766666553222 111111
Q ss_pred hhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcChhhHHHHHHHH
Q 001329 1007 LSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEEL 1072 (1099)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~~k~~~~laG~t~Rv~el~~~ 1072 (1099)
+ +.+.+. .+. -+.+++.--..+. ......+..+...+.++.+-.....|+.|+++.
T Consensus 269 ~-g~~~v~-~g~----lt~g~l~~~~~~~----~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~ 324 (582)
T 3b60_A 269 A-ASFPSV-MDS----LTAGTITVVFSSM----IALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 324 (582)
T ss_dssp H-HHSSST-TSS----SHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred H-HHHHHH-cCC----CCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 111111 121 1233444222222 335678888999999999999999999988764
No 191
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.75 E-value=7.3e-06 Score=84.24 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=29.8
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCcC-CccEEE
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIA 503 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~ 503 (1099)
.+|++++|+||||||||||++.|++++++ ..|.|.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 36899999999999999999999999874 455553
No 192
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.72 E-value=5e-06 Score=95.05 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=50.8
Q ss_pred CCcEEEEeeEEEcCCCCceee--------------eeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 442 ANYIEFSGVKVVTPTGNVLVE--------------NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 442 ~~~I~~~~v~~~y~~~~~vL~--------------~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.+.+.|+||++.||.++..++ |+++.+.+|++++|+||+|||||||++.|++...
T Consensus 131 ~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 356899999999998888999 9999999999999999999999999999998763
No 193
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.71 E-value=8e-05 Score=84.85 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=34.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh------cCcEEEEEccChhHH
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRA------MGTSCITISHRPALV 638 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~------~g~TvI~ItH~l~~i 638 (1099)
.+|.++++||+... |......+.+.+.+ .+.++|++||+....
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45889999999886 88888888777643 477899999988644
No 194
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.70 E-value=1e-05 Score=84.54 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=31.4
Q ss_pred eEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCC
Q 001329 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV 507 (1099)
Q Consensus 465 sl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~ 507 (1099)
.++.++|++++|+|||||||||++++|++.+ |.+.++|.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d 61 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEAD 61 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccc
Confidence 3566899999999999999999999999987 88888774
No 195
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.56 E-value=8e-05 Score=83.66 Aligned_cols=131 Identities=11% Similarity=0.082 Sum_probs=80.7
Q ss_pred CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcc
Q 001329 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIY 535 (1099)
Q Consensus 456 ~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~ 535 (1099)
.+-+.|+++.--+++|+.+.|.|++|+|||||+.-++.-.-. .| ..+.|+.=+
T Consensus 53 TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------~~vl~~slE-------------- 105 (315)
T 3bh0_A 53 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------DVVNLHSLE-------------- 105 (315)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------CEEEEEESS--------------
T ss_pred CChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------CeEEEEECC--------------
Confidence 344567777767999999999999999999999887743211 11 124444322
Q ss_pred CCCCCCcCCcCCHHHHHH----HHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 001329 536 PLTSDQEVEPLTHGGMVE----LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 611 (1099)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~----~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~ 611 (1099)
.+.+++.+ ....+++.++.... ..||++++||++.|...+.++++++.|+|...++.
T Consensus 106 ----------~s~~~l~~R~~~~~~~i~~~~l~~~~---------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~ 166 (315)
T 3bh0_A 106 ----------MGKKENIKRLIVTAGSINAQKIKAAR---------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNY 166 (315)
T ss_dssp ----------SCHHHHHHHHHHHHTTCCHHHHHSCH---------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHH
T ss_pred ----------CCHHHHHHHHHHHHcCCCHHHHhcCC---------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHH
Confidence 11222222 22223333332110 12999999999999999999999999998744322
Q ss_pred HHHHHHHHHHHhcCcE--EEEEcc
Q 001329 612 DMEERFCAKVRAMGTS--CITISH 633 (1099)
Q Consensus 612 ~~~~~l~~~l~~~g~T--vI~ItH 633 (1099)
....+.++.++.|.. +|+|-|
T Consensus 167 -i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 167 -IWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp -HHHHHHHHHHTSSSCCEEEEEEC
T ss_pred -HHHHHHHHHHhcCCCCeEEEEeC
Confidence 122333444455666 777755
No 196
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.54 E-value=1.4e-05 Score=83.53 Aligned_cols=40 Identities=20% Similarity=0.057 Sum_probs=35.2
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCC
Q 001329 468 VEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV 507 (1099)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~ 507 (1099)
.++|++++|+|+|||||||+++.|++++++..|.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 4678999999999999999999999999988888876543
No 197
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.54 E-value=2.8e-05 Score=83.11 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=33.9
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCC
Q 001329 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508 (1099)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~ 508 (1099)
.+.++|++++|.|+|||||||++++|+|+ .|+|.+.+.+
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 34578999999999999999999999998 6888877654
No 198
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.48 E-value=0.0022 Score=78.29 Aligned_cols=244 Identities=14% Similarity=0.034 Sum_probs=137.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHH
Q 001329 813 FIAPSIRHLTARLALGWRIRMTQHLLKSYLR-KNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILW 891 (1099)
Q Consensus 813 ~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~-~~~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~ 891 (1099)
+.+..-.|+..+++.+...+|.+.+++..++ +..||.- .+..+-=.++|+|++...+.+++...++..-++-++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~----~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~ 152 (595)
T 2yl4_A 77 AANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDK----TRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASV 152 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH----SCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555555555555555555555554 3344431 1122234688999998777666555555544444443
Q ss_pred HHHHHHHhhCcchHHHHHHHHHHHHHHHhhcCCcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHH
Q 001329 892 FTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRF 971 (1099)
Q Consensus 892 ~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~~~P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~ 971 (1099)
+..-+.. +.+.-.++++..+.+...+.+.+.+...+...+.++..+++-..-.-.+.+.++|--|+..+.|.+..++..
T Consensus 153 ~~~~l~~-~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~ 231 (595)
T 2yl4_A 153 GISMMFF-VSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKV 231 (595)
T ss_dssp HHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHH
Confidence 3333322 222222222222233333444555556667777777777766666677889999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhccchhhhhhhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Q 001329 972 RELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILE 1051 (1099)
Q Consensus 972 ~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~ 1051 (1099)
++..+...+..+...++..+-+++.- +..++.+. .+.+.+. .+.. +.+++.--..+. ......+..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~g~~~v~-~g~l----t~g~l~~~~~~~----~~~~~pl~~l~~ 300 (595)
T 2yl4_A 232 DHVMQLARKEAFARAGFFGATGLSGN-LIVLSVLY-KGGLLMG-SAHM----TVGELSSFLMYA----FWVGISIGGLSS 300 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHH-TTSC----CHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHH-cCCC----CHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 88887777666666555544444431 21111111 1111111 1211 133443222222 234667888888
Q ss_pred HHHHHHHhcChhhHHHHHHHH
Q 001329 1052 LHRKFVELSGGINRIFELEEL 1072 (1099)
Q Consensus 1052 ~~k~~~~laG~t~Rv~el~~~ 1072 (1099)
.+.++.+-.....|+.|+++.
T Consensus 301 ~~~~~~~~~~s~~ri~~~l~~ 321 (595)
T 2yl4_A 301 FYSELMKGLGAGGRLWELLER 321 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 889999988999999988753
No 199
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.47 E-value=0.00029 Score=79.34 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=74.4
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcCcC-cCC-ccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCC
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLW-PLV-SGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~-~p~-~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~ 544 (1099)
-+++|+++.|.||+|||||||+..++.-. .|. .| |. ...+.|+.-+..+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~----~~~vlyi~~e~~~-------------------- 153 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL----SGKAVYIDTEGTF-------------------- 153 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC----SCEEEEEESSSCC--------------------
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC----CCeEEEEECCCCC--------------------
Confidence 58999999999999999999999887643 221 11 10 1134444433211
Q ss_pred cCCHHHHHHHHHhcCCh--hHHhcCCCCcccCCCCCcChH-HHHHHHHHHHHc---cCCCEEEEeCCCCCCCHH------
Q 001329 545 PLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLG-EQQRLGMARLFY---HKPKFAILDECTSAVTTD------ 612 (1099)
Q Consensus 545 ~~~~~~i~~~l~~~~l~--~~~~~~p~~~~~~~g~~LSGG-qrQRlaIARAL~---~~P~iliLDEpTSaLD~~------ 612 (1099)
+.+++.+.++.++++ ++.++... ....++. +.+.+..++.++ .+|+++|+|+.++-.+.+
T Consensus 154 --~~~~l~~~~~~~g~~~~~~~~~l~~------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~ 225 (324)
T 2z43_A 154 --RWERIENMAKALGLDIDNVMNNIYY------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGREN 225 (324)
T ss_dssp --CHHHHHHHHHHTTCCHHHHHHTEEE------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTS
T ss_pred --CHHHHHHHHHHhCCCHHHHhccEEE------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCccc
Confidence 122333333444332 11121100 0012333 346677788887 679999999999876431
Q ss_pred --H-H---HHHH----HHHHhcCcEEEEEccCh
Q 001329 613 --M-E---ERFC----AKVRAMGTSCITISHRP 635 (1099)
Q Consensus 613 --~-~---~~l~----~~l~~~g~TvI~ItH~l 635 (1099)
. + .++. +..++.++++|++.|-.
T Consensus 226 ~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 226 LAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 1 1 1222 23345699999999854
No 200
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.43 E-value=0.0005 Score=75.76 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------HHHHHHHHHHhc-------CcEEEEEccChhH-----
Q 001329 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTD----------MEERFCAKVRAM-------GTSCITISHRPAL----- 637 (1099)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~----------~~~~l~~~l~~~-------g~TvI~ItH~l~~----- 637 (1099)
++++++|..++++...+|.++++||+.+.++.. ....++..+... +..+|.+|+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 467888888888888999999999998876532 223344444432 3457778887643
Q ss_pred HHhcCEEEEEe
Q 001329 638 VAFHDVVLSLD 648 (1099)
Q Consensus 638 i~~~D~Il~l~ 648 (1099)
.+.+++++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 33566665443
No 201
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.43 E-value=5.3e-05 Score=79.66 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=27.7
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCcC
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPL 497 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p 497 (1099)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999999999987
No 202
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.41 E-value=0.00012 Score=85.60 Aligned_cols=149 Identities=13% Similarity=0.073 Sum_probs=80.5
Q ss_pred eeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCC--cccHHHHhccCCCC
Q 001329 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTA--VGTLRDQLIYPLTS 539 (1099)
Q Consensus 462 ~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~--~~Ti~eni~~~~~~ 539 (1099)
++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|. |+|... ..+..+..-.+.-.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~----------~r~aa~~qL~~~~~~~gv~v~~ 158 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT----------QRPAAREQLRLLGEKVGVPVLE 158 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS----------SCHHHHHHHHHHHHHHTCCEEE
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc----------cCchhHHHHHHhcccCCccEEe
Confidence 567777 8999999999999999999999999998888887654330 111000 01122222111100
Q ss_pred CCcCCcCCHHHH-HHHHHhc---CChh-HHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 001329 540 DQEVEPLTHGGM-VELLKNV---DLEY-LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614 (1099)
Q Consensus 540 ~~~~~~~~~~~i-~~~l~~~---~l~~-~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~ 614 (1099)
.. ...+..++ .++++.+ +.+- ++|..| ....-..-+.+...+++++..++-++++| ++++.|....
T Consensus 159 ~~--~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG------~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~av~~ 229 (425)
T 2ffh_A 159 VM--DGESPESIRRRVEEKARLEARDLILVDTAG------RLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEALSV 229 (425)
T ss_dssp CC--TTCCHHHHHHHHHHHHHHTTCSEEEEECCC------CSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHHHHH
T ss_pred cC--CCCCHHHHHHHHHHHHHHCCCCEEEEcCCC------cccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHHHHH
Confidence 00 01122233 3333322 1100 111111 00112345677778888887777788888 5566555432
Q ss_pred HHHHHHHHhcCcEEEEEcc
Q 001329 615 ERFCAKVRAMGTSCITISH 633 (1099)
Q Consensus 615 ~~l~~~l~~~g~TvI~ItH 633 (1099)
+...-...+.+-+++|+
T Consensus 230 --a~~f~~~l~i~GVIlTK 246 (425)
T 2ffh_A 230 --ARAFDEKVGVTGLVLTK 246 (425)
T ss_dssp --HHHHHHHTCCCEEEEES
T ss_pred --HHHHHhcCCceEEEEeC
Confidence 22222235677777776
No 203
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.40 E-value=0.0017 Score=79.18 Aligned_cols=293 Identities=14% Similarity=0.081 Sum_probs=165.1
Q ss_pred hhhHHHHhhHHHHHHHhcCCcchhHHh-hcCHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001329 764 VAFLVVSRTWISDRIASLNGTTVKYVL-EQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYL 842 (1099)
Q Consensus 764 c~~~lv~Rt~ls~~va~l~g~~v~~iv-~~~~~~F~~~l~~~~~~~~~~s~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl 842 (1099)
..++.+.-+.+++...-+-|.++..++ ..+...+...++.+++..+..++.+..-.|+..+++.+...+|.+.+++..+
T Consensus 42 ~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 121 (598)
T 3qf4_B 42 VFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQ 121 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666665554 3444444444444433333334444444455555555555555555555555
Q ss_pred c-CCCceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHhh
Q 001329 843 R-KNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRS 921 (1099)
Q Consensus 843 ~-~~~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~ 921 (1099)
+ ...||.-. ...+-=+|+|+|+++..+.+++...++..-++-++....-+...-..-+ ++++..+.+...+.+.
T Consensus 122 ~~~~~~~~~~----~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~-l~~l~~~~l~~~~~~~ 196 (598)
T 3qf4_B 122 RVPVGFFDRT----PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILS-LVTLSIVPLTVLITQI 196 (598)
T ss_dssp HSCTHHHHHS----CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHTTHHHHHHHHHHH
T ss_pred CCCHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4 34444311 1122336889999998888877666666655555554444433222111 2222222233334455
Q ss_pred cCCcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccc
Q 001329 922 VTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPH 1001 (1099)
Q Consensus 922 ~~P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~ 1001 (1099)
+.+...++..+.++..++....=...+++.++|--|+..+.+.+..++..++..+...+..+...++..+-+++.--...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (598)
T 3qf4_B 197 VSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFA 276 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666667777777776666777889999999999999999888888887776666555555544444443222111
Q ss_pred hhhhhhhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcChhhHHHHHHHH
Q 001329 1002 NVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEEL 1072 (1099)
Q Consensus 1002 ~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~~k~~~~laG~t~Rv~el~~~ 1072 (1099)
.+-| +.+..+. .+. -+.+... ....+.......+..+...+.++.+-.+...|+.|+++.
T Consensus 277 ~~~~-~g~~l~~--~g~----ls~g~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 336 (598)
T 3qf4_B 277 LISG-FGGWLAL--KDI----ITVGTIA----TFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL 336 (598)
T ss_dssp HHHH-HHHHHGG--GTS----SCHHHHH----HHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHH-HHHHHHH--cCC----CCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1111 1111111 111 1123332 223333335677888888899999999999999988753
No 204
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.39 E-value=0.0028 Score=77.03 Aligned_cols=291 Identities=13% Similarity=0.053 Sum_probs=163.1
Q ss_pred hHHHHhhHHHHHHHhcCCcchhHHhhcC----HHHH----HHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001329 766 FLVVSRTWISDRIASLNGTTVKYVLEQD----KASF----VRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837 (1099)
Q Consensus 766 ~~lv~Rt~ls~~va~l~g~~v~~iv~~~----~~~F----~~~l~~~~~~~~~~s~~n~~l~~~~~~l~l~~R~rLt~~~ 837 (1099)
++.+..+.+.+...-+-+.++..++... ...+ ....+..++..+-.++.+..-.|+..+++.+.+.+|.+.+
T Consensus 21 ~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 100 (578)
T 4a82_A 21 IVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKL 100 (578)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666666655432 2222 1111112222222233344444555666666666666666
Q ss_pred HHHhcc-CCCceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhCcchHHHHHHHHHHHH
Q 001329 838 LKSYLR-KNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGL 916 (1099)
Q Consensus 838 ~~~Yl~-~~~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~ 916 (1099)
++..++ ...||. +.+..+-=+++|+|+++..+.+++...++..-++-++.+..-+...-+.-+... ...+.+..
T Consensus 101 ~~~ll~~~~~~~~----~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~-l~~~~l~~ 175 (578)
T 4a82_A 101 YNHLQALSARFYA----NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAA-LFIFPFYI 175 (578)
T ss_dssp HHHHHHSCHHHHH----TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHH-TTHHHHHH
T ss_pred HHHHHCCCHHHHc----CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 666655 334443 111222336889999998887777666665555555554444444333333222 22222223
Q ss_pred HHHhhcCCcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001329 917 GFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVT 996 (1099)
Q Consensus 917 ~~lr~~~P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~ 996 (1099)
.+.+.+.+...+...++++..++....-.-.+.+.++|--|+..+.|.+..++...+..+...+..+...+...+-+++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (578)
T 4a82_A 176 LTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVT 255 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666777777777777777788899999999999999999998888887777666655544444444332
Q ss_pred hhccchhhhhhhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcChhhHHHHHHHH
Q 001329 997 KQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEEL 1072 (1099)
Q Consensus 997 Ky~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~~k~~~~laG~t~Rv~el~~~ 1072 (1099)
--. .++...+.+..+. .+. -+.++..- ...+.......+..+...+.++.+-.....|+.|+++.
T Consensus 256 ~~~-~~~v~~~g~~~v~--~g~----lt~g~l~~----~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 320 (578)
T 4a82_A 256 DIG-PIIVIGVGAYLAI--SGS----ITVGTLAA----FVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (578)
T ss_dssp HHH-HHHHHHHHHHHHH--HTS----CCHHHHHH----HHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHH-HHHHHHHHHHHHH--cCC----cCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111 1111111111111 111 11333332 22223335677888899999999999999999988764
No 205
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.37 E-value=9.2e-05 Score=83.88 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=26.9
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCcCCc
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~ 499 (1099)
.++..+.|.||+|+|||||++.+++..++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999876543
No 206
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.35 E-value=0.00052 Score=78.01 Aligned_cols=132 Identities=12% Similarity=0.108 Sum_probs=73.2
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcCc--CcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCC
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl--~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~ 544 (1099)
-+++|+++.|.||+|||||||+..++.. .++..| |. ...+.|+.-+..+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g~----~~~vlyi~~E~~~-------------------- 168 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----YP----GGKIIFIDTENTF-------------------- 168 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----BC----CCEEEEEESSSCC--------------------
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----CC----CCeEEEEECCCCC--------------------
Confidence 5889999999999999999999988874 333211 10 1234455433211
Q ss_pred cCCHHHHHHHHHhcCCh--hHHhcCCCCcccCCCCCcChHH-HHHHHHHHHHc----cCCCEEEEeCCCCCCCHH-----
Q 001329 545 PLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGE-QQRLGMARLFY----HKPKFAILDECTSAVTTD----- 612 (1099)
Q Consensus 545 ~~~~~~i~~~l~~~~l~--~~~~~~p~~~~~~~g~~LSGGq-rQRlaIARAL~----~~P~iliLDEpTSaLD~~----- 612 (1099)
+.+++.+.++..+++ +++++.-. ....++.+ .+.+..++.++ .+|+++|+|+.++-.+.+
T Consensus 169 --~~~~l~~~~~~~g~~~~~~l~~l~~------~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g 240 (343)
T 1v5w_A 169 --RPDRLRDIADRFNVDHDAVLDNVLY------ARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRG 240 (343)
T ss_dssp --CHHHHHHHHHHTTCCHHHHHHTEEE------EECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGG
T ss_pred --CHHHHHHHHHHcCCCHHHHHhceeE------eecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccc
Confidence 122233333333332 11221100 00123332 34555566666 679999999999876442
Q ss_pred --H-----HHHH----HHHHHhcCcEEEEEccCh
Q 001329 613 --M-----EERF----CAKVRAMGTSCITISHRP 635 (1099)
Q Consensus 613 --~-----~~~l----~~~l~~~g~TvI~ItH~l 635 (1099)
. ..++ .++.++.|+++|+++|-.
T Consensus 241 ~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 241 ELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 1 1122 223345699999999954
No 207
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.35 E-value=3.5e-05 Score=92.97 Aligned_cols=42 Identities=29% Similarity=0.414 Sum_probs=37.2
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCcc-EEE-eCCC
Q 001329 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG-HIA-KPGV 507 (1099)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G-~I~-i~g~ 507 (1099)
..+++|++++|+|+||||||||+++|+|.+.|++| +|. ++|.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 35789999999999999999999999999999987 674 7773
No 208
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.32 E-value=0.0071 Score=73.60 Aligned_cols=293 Identities=11% Similarity=0.010 Sum_probs=147.6
Q ss_pred hhhHHHHhhHHHHHHHhcCCcchhHHh-hcCHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001329 764 VAFLVVSRTWISDRIASLNGTTVKYVL-EQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYL 842 (1099)
Q Consensus 764 c~~~lv~Rt~ls~~va~l~g~~v~~iv-~~~~~~F~~~l~~~~~~~~~~s~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl 842 (1099)
..++.+.-+.+++...-+-+.++..++ .++...+....+.++++++...+.+..-.|+..+.+.++..+|-+.+++..+
T Consensus 28 ~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 107 (587)
T 3qf4_A 28 APLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVL 107 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666555556665443 3455555444433333333333333333444444444333333333333333
Q ss_pred c-CCCceEEecCCCCCCCCCcchhhhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHhh
Q 001329 843 R-KNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRS 921 (1099)
Q Consensus 843 ~-~~~yY~~~~ld~ri~n~Dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~ 921 (1099)
+ ...|+.- .+..+-=+|+|+|+++..+.++.....+...++-++....-+. .+.+.-.+++...+.+...+...
T Consensus 108 ~~~~~~~~~----~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~-~~~~~l~l~~l~~~~~~~~~~~~ 182 (587)
T 3qf4_A 108 SFSISNVNR----FHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAV-SINVKLSSVLIFLIPPIVLLFVW 182 (587)
T ss_dssp HCCHHHHHH----SCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH-HHCTTTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2222211 1122234588999999888887776666555544443333222 22333222222222222223333
Q ss_pred cCCcchhhcHHHHhhccchhhhhhhhhhchhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccc
Q 001329 922 VTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPH 1001 (1099)
Q Consensus 922 ~~P~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~ 1001 (1099)
+.....++..+.++..+++...-.-.+.+.++|--|+.++.|....++..+++.+...+..+...+...+-.++.--...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (587)
T 3qf4_A 183 LTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMI 262 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33434555555666666666666677888999999999999988888887777666555544333333222222111100
Q ss_pred hhhhhhhhhheecccCcccccchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcChhhHHHHHHHH
Q 001329 1002 NVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEEL 1072 (1099)
Q Consensus 1002 ~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~grl~~~~k~~~~laG~t~Rv~el~~~ 1072 (1099)
.+-| .+.+.+. .+. -+.++...-..+... ....+..+...+..+.+-.....|+.|+++.
T Consensus 263 ~vl~--~g~~~v~-~g~----lt~g~~~~~~~~~~~----~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 322 (587)
T 3qf4_A 263 AVLW--FGGVLVR-NNQ----MEIGSIMAYTNYLMQ----IMFSLMMIGNILNFIVRASASAKRVLEVLNE 322 (587)
T ss_dssp HHHH--HHHHHHH-TTS----SCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH--HHHHHHH-cCC----cCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1111 1111111 111 113344332222222 3456667777777888888888999987764
No 209
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.32 E-value=5.3e-05 Score=76.85 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=29.9
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCC
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG 506 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g 506 (1099)
.+|++++|+|+|||||||+++.|++.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 468999999999999999999999875 7777766
No 210
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.27 E-value=8.4e-05 Score=87.04 Aligned_cols=50 Identities=24% Similarity=0.267 Sum_probs=37.6
Q ss_pred cEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCcc
Q 001329 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500 (1099)
Q Consensus 444 ~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G 500 (1099)
.|+++|+ ..|.+ . . ++++.+|++++|+||||||||||+++|.++..|.++
T Consensus 6 ~l~~~~~-~~~~~-~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 6 GLELSNF-KSYRG-V---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEEEESC-SSCCS-E---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEEEeCE-EEECC-c---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 4677777 45532 1 2 255778999999999999999999999999988764
No 211
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.23 E-value=0.00037 Score=81.53 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEe
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i 504 (1099)
++.+++++|++||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 56889999999999999999999998876555543
No 212
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.15 E-value=7.1e-05 Score=90.40 Aligned_cols=48 Identities=31% Similarity=0.403 Sum_probs=43.1
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCC
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV 507 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~ 507 (1099)
.+++++++++ +|+.++|+||||||||||+++|++...+..|+|.+.|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 4678888888 89999999999999999999999999999999988774
No 213
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.11 E-value=0.00016 Score=72.97 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWPL 497 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p 497 (1099)
.|++++|+|+|||||||++++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999998753
No 214
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.08 E-value=0.00084 Score=74.18 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=26.9
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcCcCCccEE
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I 502 (1099)
..+.|+||+|+||||+++.|++...+.+|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999887766643
No 215
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.07 E-value=0.00041 Score=87.56 Aligned_cols=31 Identities=29% Similarity=0.548 Sum_probs=28.7
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
+.+++|+.++|+||||||||||+++|++..+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999999999999864
No 216
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.00 E-value=0.00015 Score=73.81 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=30.3
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCcCCcc--EEEeCC
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIAKPG 506 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G--~I~i~g 506 (1099)
++|++++|+|++||||||+++.|++.+++ .| .|.+++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECC
Confidence 47899999999999999999999998866 56 555443
No 217
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.99 E-value=0.0028 Score=67.56 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=24.2
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCcCCccE
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGH 501 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~ 501 (1099)
.++|+|++|+|||||++.|+|...+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 58999999999999999999977666553
No 218
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.98 E-value=0.00055 Score=80.45 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=31.4
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHH---hcCcEEEEEccCh
Q 001329 595 HKPKFAILDECTSAVTT-DMEERFCAKVR---AMGTSCITISHRP 635 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~-~~~~~l~~~l~---~~g~TvI~ItH~l 635 (1099)
.+|++|++||+..-.+. .++..++..+. +.|..+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 56666666653 4588899999974
No 219
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.94 E-value=0.0001 Score=83.71 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=40.8
Q ss_pred CceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEE
Q 001329 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503 (1099)
Q Consensus 458 ~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~ 503 (1099)
..+++++++++.+|.+++|+|++|+|||||++.|++.+.+..|++.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~ 88 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA 88 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 3578899999999999999999999999999999999987766554
No 220
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.86 E-value=0.00026 Score=73.31 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=31.8
Q ss_pred EEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcC
Q 001329 452 VVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 452 ~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~G 493 (1099)
+.|++-.++++++|+..+++ .++++|++|+|||||++.+.+
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 34555567899999998887 589999999999999999986
No 221
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.82 E-value=0.00021 Score=75.04 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=35.6
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCcc--EEEeCC
Q 001329 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIAKPG 506 (1099)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G--~I~i~g 506 (1099)
+.+++|.++.|+|++||||||+.+.|++.++|..| .+.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 44678999999999999999999999999988888 666654
No 222
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.77 E-value=0.0017 Score=72.17 Aligned_cols=30 Identities=27% Similarity=0.550 Sum_probs=26.7
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+.++++..+.|.||+|||||||+++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788999999999999999999999865
No 223
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.77 E-value=0.00044 Score=74.07 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=30.5
Q ss_pred eeeeeEEEe---CCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEE
Q 001329 461 VENLTLKVE---PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503 (1099)
Q Consensus 461 L~~vsl~i~---~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~ 503 (1099)
|.++|+.+. +|..++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 555566555 8999999999999999999999998887 55543
No 224
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.73 E-value=0.00039 Score=83.41 Aligned_cols=34 Identities=35% Similarity=0.517 Sum_probs=31.0
Q ss_pred eeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCc
Q 001329 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 460 vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++++++.+| +.+|+|+||||||||+.+|..+
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999 9999999999999999999554
No 225
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.72 E-value=0.00067 Score=67.70 Aligned_cols=30 Identities=40% Similarity=0.562 Sum_probs=24.6
Q ss_pred eeeeEEEeCCCEEEEEcCCCCchhHHHHHhc
Q 001329 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLG 492 (1099)
Q Consensus 462 ~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~ 492 (1099)
++.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445566655 88999999999999999987
No 226
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.67 E-value=0.0004 Score=79.13 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEe
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i 504 (1099)
++.+++|+|++|||||||++.|.|...+.+|+|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 46789999999999999999999999888776654
No 227
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.63 E-value=0.0018 Score=70.66 Aligned_cols=28 Identities=32% Similarity=0.606 Sum_probs=24.3
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 468 VEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+.++..+.|.||+|+|||||++.+++..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999998764
No 228
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.51 E-value=0.0024 Score=71.35 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCcCC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLV 498 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~ 498 (1099)
.+..+.|.||+|+|||||++.+++...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35679999999999999999999876543
No 229
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.48 E-value=0.00058 Score=72.94 Aligned_cols=123 Identities=16% Similarity=0.133 Sum_probs=65.2
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCC-cccHHHHhccCCCCCCcCCcC
Q 001329 468 VEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTA-VGTLRDQLIYPLTSDQEVEPL 546 (1099)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~ 546 (1099)
+.+|+.++++||+||||||++.+++.......|. ...++++.+.|... ..++.+++.......-
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~----- 137 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------AAECNIVVTQPRRISAVSVAERVAFERGEEP----- 137 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------GGGCEEEEEESSHHHHHHHHHHHHHTTTCCT-----
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------CCceEEEEeccchHHHHHHHHHHHHHhcccc-----
Confidence 3578999999999999999988764322111111 12466777777532 2355555542211000
Q ss_pred CHHHHHHHHHhcCCh-hHHhcCC-CCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHH
Q 001329 547 THGGMVELLKNVDLE-YLLDRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS-AVTTDMEERFC 618 (1099)
Q Consensus 547 ~~~~i~~~l~~~~l~-~~~~~~p-~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTS-aLD~~~~~~l~ 618 (1099)
-..+|.. .+.+... .+... .--+.|.-.+.. +..+.+.+++|+||+-. ++|........
T Consensus 138 --------~~~~g~~~~~~~~~~~~~~~I---vv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l 199 (235)
T 3llm_A 138 --------GKSCGYSVRFESILPRPHASI---MFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVL 199 (235)
T ss_dssp --------TSSEEEEETTEEECCCSSSEE---EEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHH
T ss_pred --------CceEEEeechhhccCCCCCeE---EEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHH
Confidence 0000100 0000100 00000 013456666653 33689999999999987 58777664333
No 230
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.44 E-value=0.0015 Score=67.07 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=20.6
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcC
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.+++++++..++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4788999988877 789999999999999999986
No 231
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.39 E-value=0.011 Score=67.43 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=31.4
Q ss_pred CCCCceeeeee--EEEeCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 455 PTGNVLVENLT--LKVEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 455 ~~~~~vL~~vs--l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+.+.+.|+.+- =-+++|+++.|.|++|||||||...++...
T Consensus 45 ~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 45 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555566652 138999999999999999999998877543
No 232
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.39 E-value=0.0013 Score=67.55 Aligned_cols=32 Identities=31% Similarity=0.526 Sum_probs=26.5
Q ss_pred eeeEEEeCCCEEEEEcCCCCchhHHHHHhcCc
Q 001329 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 463 ~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
++|++..+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
No 233
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.34 E-value=0.0088 Score=62.15 Aligned_cols=41 Identities=10% Similarity=0.134 Sum_probs=32.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChh
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPA 636 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~ 636 (1099)
.+|.++++||+-. +|......+.+.+.+. +..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 4688999999876 7888888888888763 667888888765
No 234
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.33 E-value=0.0012 Score=68.93 Aligned_cols=30 Identities=27% Similarity=0.548 Sum_probs=26.4
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
...+|..++|+|||||||||+.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999988764
No 235
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.32 E-value=0.0065 Score=71.35 Aligned_cols=41 Identities=22% Similarity=0.232 Sum_probs=33.4
Q ss_pred CCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 456 ~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.+-+-|+.+.--+++|+.+.|.|++|+|||||+.-++.-..
T Consensus 185 tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 185 TGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp CSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34456777765699999999999999999999988876544
No 236
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.32 E-value=0.0021 Score=64.80 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
++|..++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 237
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.27 E-value=0.00066 Score=75.69 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=36.3
Q ss_pred ee-eeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeC
Q 001329 462 EN-LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 505 (1099)
Q Consensus 462 ~~-vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~ 505 (1099)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+-
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 34 677766 99999999999999999999999998877766543
No 238
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.27 E-value=0.0012 Score=67.64 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=30.3
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEE
Q 001329 468 VEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502 (1099)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I 502 (1099)
..+|..+.|+|++||||||+.+.|++.+.+..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 45789999999999999999999999887666654
No 239
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.26 E-value=0.0026 Score=74.60 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=29.7
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCc------------CCccEEEeCCC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWP------------LVSGHIAKPGV 507 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~------------p~~G~I~i~g~ 507 (1099)
.++|+|+||+|||||++.|+|... +.+|.+.++|.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 689999999999999999999853 56788888874
No 240
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.21 E-value=0.0096 Score=66.60 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=24.8
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcC
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~G 493 (1099)
-+++|+++.|.||+|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999988774
No 241
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.18 E-value=0.0024 Score=73.75 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=32.1
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcCc-----------CcCCccEEEeCC
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLGGL-----------WPLVSGHIAKPG 506 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl-----------~~p~~G~I~i~g 506 (1099)
.+..|..++|||++|+|||||++.|.|. .+|..|.+.+++
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3467889999999999999999999997 566777777655
No 242
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.09 E-value=0.0033 Score=74.10 Aligned_cols=58 Identities=9% Similarity=-0.067 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHH
Q 001329 581 LGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALV 638 (1099)
Q Consensus 581 GGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i 638 (1099)
+.|.+-...+...+.+++++|+......-......++.+.+++.++.+|++.+..+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 3577778888888999998887655544333444567788888889999999877654
No 243
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.99 E-value=0.0031 Score=66.04 Aligned_cols=29 Identities=41% Similarity=0.579 Sum_probs=23.8
Q ss_pred eeeEEEeCCCEEEEEcCCCCchhHHHHHhc
Q 001329 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLG 492 (1099)
Q Consensus 463 ~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~ 492 (1099)
+.++++.+| ..+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445555554 89999999999999999885
No 244
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.96 E-value=0.0073 Score=68.22 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=25.1
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCcC
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPL 497 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p 497 (1099)
..+..+.|.||+|+|||||++.++.....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56778999999999999999999986643
No 245
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.96 E-value=0.00082 Score=76.94 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=35.8
Q ss_pred CcEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEE
Q 001329 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503 (1099)
Q Consensus 443 ~~I~~~~v~~~y~~~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~ 503 (1099)
+.+.++|++..+. ++.++++++|+| +|+|++|+|||||++.|.|.-.+..|.+.
T Consensus 16 ~~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~ 69 (361)
T 2qag_A 16 GYVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIP 69 (361)
T ss_dssp -----CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------
T ss_pred ceEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCccc
Confidence 4578888887663 456889999977 99999999999999999887666555543
No 246
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.94 E-value=0.0091 Score=63.67 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=37.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccC-----------hhHHHhcCEEEEEe
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHR-----------PALVAFHDVVLSLD 648 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~-----------l~~i~~~D~Il~l~ 648 (1099)
+|+++++||.-- |+.+..+.+ ..+...|.++|++.|+ ..++..||.|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 776644444 3444469999999993 33556899999875
No 247
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.87 E-value=0.0028 Score=65.70 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
+++|+|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 248
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.77 E-value=0.0037 Score=64.12 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=27.4
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcCcCC---ccEEEeCC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPG 506 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g 506 (1099)
..++|+|+||||||||++.|.+.+++. -|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 579999999999999999999876543 25555443
No 249
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.75 E-value=0.0051 Score=62.16 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.++|-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 250
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.73 E-value=0.0072 Score=60.18 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.7
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998653
No 251
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.71 E-value=0.0049 Score=62.62 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCcCC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWPLV 498 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~p~ 498 (1099)
.++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 58999999999999999999975443
No 252
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.66 E-value=0.0026 Score=65.91 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 253
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.0011 Score=74.72 Aligned_cols=44 Identities=27% Similarity=0.290 Sum_probs=38.6
Q ss_pred CCceeeeeeEEEeCCCE--EEEEcCCCCchhHHHHHhcCcCcCCcc
Q 001329 457 GNVLVENLTLKVEPGSN--LLITGPNGSGKSSLFRVLGGLWPLVSG 500 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~--vaIvG~sGsGKSTLl~lL~Gl~~p~~G 500 (1099)
...+++.++..++.|+. +.+.||+|+||||+++++++...+..+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 34688999999999998 999999999999999999998766544
No 254
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.63 E-value=0.0024 Score=69.04 Aligned_cols=38 Identities=18% Similarity=0.390 Sum_probs=30.6
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCC
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG 506 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g 506 (1099)
..+++..+.|+|++||||||+.+.|++.+. .|.+.+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 345678899999999999999999998764 24566665
No 255
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.62 E-value=0.0016 Score=74.10 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=34.5
Q ss_pred ceeeeeeEEEeCCCE--EEEEcCCCCchhHHHHHhcCcCc
Q 001329 459 VLVENLTLKVEPGSN--LLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~--vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.+++++++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478889999999999 99999999999999999998754
No 256
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.61 E-value=0.0025 Score=68.45 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCc
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.-+++|+||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999843
No 257
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.51 E-value=0.0032 Score=67.20 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.7
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCc
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.+|.+++|+|++||||||+.+.|++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999863
No 258
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.45 E-value=0.0069 Score=61.05 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
|..+.|+|++||||||+.+.|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999987654
No 259
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.43 E-value=0.0053 Score=62.38 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=22.7
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCc
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 260
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.27 E-value=0.005 Score=66.30 Aligned_cols=33 Identities=33% Similarity=0.597 Sum_probs=23.5
Q ss_pred eeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 462 ~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
+++++..++| +.|+||+|+|||||+++|++...
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 3334444444 89999999999999999998764
No 261
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.22 E-value=0.0081 Score=59.88 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 262
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.16 E-value=0.0056 Score=68.15 Aligned_cols=26 Identities=31% Similarity=0.274 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
++.+++|+|++|+|||||++.|.|.-
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34489999999999999999999863
No 263
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.15 E-value=0.058 Score=61.71 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=28.6
Q ss_pred CCCceeeeeeE--EEeCCCEEEEEcCCCCchhHHHHHhcC
Q 001329 456 TGNVLVENLTL--KVEPGSNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 456 ~~~~vL~~vsl--~i~~Ge~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.+.+-|+.+-= -+++|+.+.|.||+|||||||...++.
T Consensus 57 TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 57 TGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 34444444322 479999999999999999999977764
No 264
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.04 E-value=0.007 Score=69.66 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=36.7
Q ss_pred CCceeeeeeEEE---eCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeC
Q 001329 457 GNVLVENLTLKV---EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 505 (1099)
Q Consensus 457 ~~~vL~~vsl~i---~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~ 505 (1099)
+.+++-|+ +.. ..+..++|+|+|||||||+++.+++...+..+.|.+-
T Consensus 19 g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 19 GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 34555555 222 2677899999999999999999998877777777663
No 265
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.01 E-value=0.0096 Score=61.09 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998553
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.99 E-value=0.011 Score=59.96 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998744
No 267
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.91 E-value=0.004 Score=64.74 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=23.3
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCcCC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWPLV 498 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~p~ 498 (1099)
+++|+|++||||||+++.|+..+++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887654
No 268
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.91 E-value=0.012 Score=59.78 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997644
No 269
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.87 E-value=0.016 Score=67.99 Aligned_cols=128 Identities=11% Similarity=0.050 Sum_probs=73.8
Q ss_pred CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccC
Q 001329 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1099)
+-+-|+.+.--+++|+.+.|.|++|+|||||+--++.-.-.. | ..+.|+.=+-
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g------------~~vl~fSlEm-------------- 235 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D------------DVVNLHSLEM-------------- 235 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T------------CEEEEECSSS--------------
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C------------CEEEEEECCC--------------
Confidence 334455555468999999999999999999987776532211 1 1344443220
Q ss_pred CCCCCcCCcCCHHHHH-HHH-HhcCC--hhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 001329 537 LTSDQEVEPLTHGGMV-ELL-KNVDL--EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612 (1099)
Q Consensus 537 ~~~~~~~~~~~~~~i~-~~l-~~~~l--~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~ 612 (1099)
+.+++. .++ ...++ ..+.... ..|+..+.+|+.-|...+.+.++.|.|+|. ++..
T Consensus 236 ----------s~~ql~~R~~~~~~~i~~~~l~~g~---------~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~ 294 (444)
T 3bgw_A 236 ----------GKKENIKRLIVTAGSINAQKIKAAR---------RDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVN 294 (444)
T ss_dssp ----------CTTHHHHHHHHHHSCCCHHHHHHTG---------GGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHH
T ss_pred ----------CHHHHHHHHHHHHcCCCHHHHhccc---------CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHH
Confidence 111111 111 12232 2222110 128888899998888888888899888774 5554
Q ss_pred HHHH-HHHHHHhcCcE--EEEEc
Q 001329 613 MEER-FCAKVRAMGTS--CITIS 632 (1099)
Q Consensus 613 ~~~~-l~~~l~~~g~T--vI~It 632 (1099)
.... +.++.++.|.. +|+|-
T Consensus 295 ~i~~~ir~l~~~~~~~~~lIVID 317 (444)
T 3bgw_A 295 YIWSKTRQTKRKNPGKRVIVMID 317 (444)
T ss_dssp HHHHHHHHHHHHSCSSCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCeEEEEe
Confidence 4333 33344445666 66664
No 270
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.85 E-value=0.1 Score=61.02 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~ 523 (1099)
++.+++++|++|+||||++..|+..+... | +++.++.-|++
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~-G------------~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR-G------------YKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-T------------CCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC-C------------CeEEEEeCCCc
Confidence 45689999999999999999999877632 2 24666666654
No 271
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.81 E-value=0.013 Score=58.14 Aligned_cols=19 Identities=53% Similarity=0.765 Sum_probs=18.2
Q ss_pred EEEEEcCCCCchhHHHHHh
Q 001329 473 NLLITGPNGSGKSSLFRVL 491 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL 491 (1099)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 272
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.77 E-value=0.0092 Score=61.30 Aligned_cols=23 Identities=39% Similarity=0.420 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCchhHHHHHhcCc
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.+++|+|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999975
No 273
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.75 E-value=0.011 Score=60.19 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
++|..+.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467789999999999999999997643
No 274
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.72 E-value=0.082 Score=59.19 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHH--c--cCCCEEEEeCCCCCCC-H----H---------HHHH--------HHHHHHhcCcEEEEEccCh
Q 001329 582 GEQQRLGMARLF--Y--HKPKFAILDECTSAVT-T----D---------MEER--------FCAKVRAMGTSCITISHRP 635 (1099)
Q Consensus 582 GqrQRlaIARAL--~--~~P~iliLDEpTSaLD-~----~---------~~~~--------l~~~l~~~g~TvI~ItH~l 635 (1099)
+|++.+.++.++ + .+|+++|.|--++-.. . + .+.+ +...+++.|+++|+|-|=.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 566667777776 4 3699999998776641 1 0 1221 1223456799999999954
Q ss_pred h
Q 001329 636 A 636 (1099)
Q Consensus 636 ~ 636 (1099)
.
T Consensus 173 k 173 (333)
T 3io5_A 173 E 173 (333)
T ss_dssp -
T ss_pred e
Confidence 4
No 275
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.68 E-value=0.053 Score=61.61 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.+...+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999998754
No 276
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.67 E-value=0.015 Score=66.58 Aligned_cols=31 Identities=45% Similarity=0.584 Sum_probs=26.8
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCchhHHHHHhc
Q 001329 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLG 492 (1099)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~ 492 (1099)
+++..+++.+| ..+|+|||||||||++.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46777777774 89999999999999999986
No 277
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.62 E-value=0.02 Score=65.42 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=29.9
Q ss_pred CCEEEEEcCCCCchhHHHHHhcC-----------cCcCCccEEEeCC
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGG-----------LWPLVSGHIAKPG 506 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~G-----------l~~p~~G~I~i~g 506 (1099)
|-.++|||.+|+|||||++.|.| -..|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45799999999999999999998 3456778777765
No 278
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.56 E-value=0.015 Score=64.24 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=27.0
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG 506 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g 506 (1099)
.|..+.|+|||||||||+.+.|+.-++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 356799999999999999999986543 25566654
No 279
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.54 E-value=0.015 Score=58.87 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=22.8
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCc
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++..+.|+|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999844
No 280
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.47 E-value=0.016 Score=60.66 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.+-+++|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
No 281
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.45 E-value=0.16 Score=56.65 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
..+.|.||+|+||||+++.++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 468999999999999999997654
No 282
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.45 E-value=0.013 Score=60.64 Aligned_cols=23 Identities=43% Similarity=0.898 Sum_probs=19.8
Q ss_pred EEEEcCCCCchhHHHHHhcCcCc
Q 001329 474 LLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 474 vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
+.|+||||||||||++.|..-.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999875543
No 283
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.40 E-value=0.019 Score=58.99 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+|..++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999866
No 284
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.38 E-value=0.016 Score=58.55 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
No 285
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.31 E-value=0.033 Score=56.56 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchhHHHHHh-cCc----CcCCcc
Q 001329 473 NLLITGPNGSGKSSLFRVL-GGL----WPLVSG 500 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL-~Gl----~~p~~G 500 (1099)
.++|+|++|+|||||++.+ .+. +.|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 5899999999999999655 444 445555
No 286
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.29 E-value=0.019 Score=58.60 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=23.7
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
No 287
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.26 E-value=0.02 Score=59.24 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998654
No 288
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.22 E-value=0.016 Score=62.82 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++|+||+|||||||.+.|++-.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 289
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.14 E-value=0.021 Score=57.19 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCchhHHHHHhcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~G 493 (1099)
..+.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 290
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.12 E-value=0.021 Score=58.83 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
+|..++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987654
No 291
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.12 E-value=0.032 Score=62.37 Aligned_cols=34 Identities=32% Similarity=0.358 Sum_probs=30.0
Q ss_pred ceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcC
Q 001329 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 459 ~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~G 493 (1099)
..+++..+.+ .|.-++|+|+||+||||+...+.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4678877777 889999999999999999998876
No 292
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.11 E-value=0.026 Score=57.04 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 293
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.10 E-value=0.023 Score=58.92 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.3
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 468 VEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++|.+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998654
No 294
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.95 E-value=0.02 Score=58.35 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=22.8
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcCcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLWPL 497 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p 497 (1099)
..++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999987653
No 295
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.83 E-value=0.023 Score=57.34 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=18.3
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999997543
No 296
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.82 E-value=0.026 Score=57.29 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987543
No 297
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.76 E-value=0.02 Score=59.04 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998755
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.75 E-value=0.026 Score=57.12 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.+.|.|++||||||+.+.|+.-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987654
No 299
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.71 E-value=0.023 Score=58.07 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=24.3
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 468 VEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
++++.+++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998654
No 300
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.67 E-value=0.073 Score=59.13 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=23.9
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
+.+..+.|.||+|+|||++.+.|....+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 4566789999999999999999987654
No 301
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.61 E-value=0.032 Score=55.72 Aligned_cols=23 Identities=48% Similarity=0.570 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCchhHHHHHhcCc
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
++++|+|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999763
No 302
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.56 E-value=0.029 Score=61.06 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=21.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.++|+|++|||||||++.+.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999998754
No 303
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.40 E-value=0.034 Score=56.69 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.++|.|++||||||+.+.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987653
No 304
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.36 E-value=0.24 Score=55.66 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=31.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChh
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPA 636 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~ 636 (1099)
++.++++||+- .|+......+.+.+++. +..+|++|++..
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 57899999964 47888888888888774 556777787654
No 305
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.34 E-value=0.038 Score=54.24 Aligned_cols=24 Identities=42% Similarity=0.754 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.++++|++|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 589999999999999999987543
No 306
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.33 E-value=0.04 Score=57.77 Aligned_cols=27 Identities=22% Similarity=0.430 Sum_probs=23.1
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
++|-.+.|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998654
No 307
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.27 E-value=0.034 Score=56.39 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997643
No 308
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.21 E-value=0.037 Score=57.59 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999996543
No 309
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.17 E-value=0.031 Score=58.48 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
++..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987664
No 310
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.16 E-value=0.035 Score=55.40 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998643
No 311
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.15 E-value=0.04 Score=58.10 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=22.3
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++..+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998544
No 312
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.10 E-value=0.046 Score=56.35 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+-+++|+|+.||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998644
No 313
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.09 E-value=0.042 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
No 314
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.04 E-value=0.045 Score=53.72 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 315
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.04 E-value=0.045 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998743
No 316
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.03 E-value=0.048 Score=54.11 Aligned_cols=22 Identities=45% Similarity=0.610 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 317
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.01 E-value=0.11 Score=65.98 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=24.1
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcCcCCc
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLWPLVS 499 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p~~ 499 (1099)
..+.|+||+|+|||++.+.|+.......
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~ 616 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTE 616 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 4789999999999999999999876443
No 318
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.01 E-value=0.04 Score=56.73 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.1
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcCcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLWPL 497 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p 497 (1099)
..+.|.||+|+|||||++.|+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67999999999999999999986653
No 319
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.99 E-value=0.038 Score=54.13 Aligned_cols=22 Identities=23% Similarity=0.367 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 320
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.95 E-value=0.039 Score=55.91 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
=.++++|++|+|||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998754
No 321
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.95 E-value=0.044 Score=55.60 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
No 322
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.92 E-value=0.044 Score=57.14 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997544
No 323
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.90 E-value=0.042 Score=62.91 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++|||++|+|||||++.|.|..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 324
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.87 E-value=0.03 Score=61.91 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=19.6
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
++-+++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998744
No 325
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.85 E-value=0.041 Score=57.71 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998654
No 326
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.85 E-value=0.049 Score=53.58 Aligned_cols=23 Identities=39% Similarity=0.746 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 48999999999999999998643
No 327
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.82 E-value=0.046 Score=56.72 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCchhHHHHHhcCc
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
-+++|+|++||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 328
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.79 E-value=0.04 Score=53.55 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 329
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.74 E-value=0.046 Score=56.31 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.+++|+|++||||||+.+.|+..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998544
No 330
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.74 E-value=0.044 Score=53.34 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998643
No 331
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.72 E-value=0.044 Score=53.38 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998875
No 332
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.71 E-value=0.047 Score=55.24 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+.+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999997643
No 333
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.70 E-value=0.06 Score=53.41 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCc
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
+.-.++++|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999999873
No 334
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.67 E-value=0.045 Score=53.41 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
No 335
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.65 E-value=0.051 Score=58.42 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.++|+|++|+|||||++.|.|--.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999998543
No 336
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.63 E-value=0.05 Score=58.51 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+++|.|++||||||+.+.|+..+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999997643
No 337
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.60 E-value=0.052 Score=59.44 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++|+|++|||||||++.+.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
No 338
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.57 E-value=0.06 Score=53.71 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=23.9
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
..+..+.|+||+|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999987653
No 339
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.56 E-value=0.048 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999997643
No 340
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.55 E-value=0.05 Score=54.82 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998753
No 341
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.53 E-value=0.05 Score=55.09 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCchhHHHHHhcCc
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
-.++|+|++|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 342
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.52 E-value=0.049 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999854
No 343
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.49 E-value=0.21 Score=67.06 Aligned_cols=31 Identities=26% Similarity=0.235 Sum_probs=27.6
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcCcCcC
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPL 497 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p 497 (1099)
-+++|+.+.|.||+|+|||||+..++.....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 4899999999999999999999999876543
No 344
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.48 E-value=0.049 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998753
No 345
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.46 E-value=0.05 Score=54.04 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988763
No 346
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.44 E-value=0.047 Score=53.57 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999863
No 347
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.43 E-value=0.05 Score=53.19 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 348
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.42 E-value=0.057 Score=58.81 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++|+|++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999988743
No 349
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.41 E-value=0.056 Score=58.54 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
++..+.|+|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999998653
No 350
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.38 E-value=0.05 Score=54.35 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCchhHHHHHhcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~G 493 (1099)
=.++++|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999974
No 351
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.34 E-value=0.053 Score=53.78 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 352
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.31 E-value=0.05 Score=53.95 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 353
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.28 E-value=0.079 Score=59.79 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=25.6
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCcCCccEE
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I 502 (1099)
++..+.|+||+|||||||...|+.-+. |+|
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~---~ei 68 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP---LEV 68 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC---EEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC---CcE
Confidence 456899999999999999999998664 554
No 354
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.27 E-value=0.057 Score=54.22 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4799999999999999999874
No 355
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.27 E-value=0.2 Score=68.16 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=33.5
Q ss_pred CCCCceeeeee--EEEeCCCEEEEEcCCCCchhHHHHHhc
Q 001329 455 PTGNVLVENLT--LKVEPGSNLLITGPNGSGKSSLFRVLG 492 (1099)
Q Consensus 455 ~~~~~vL~~vs--l~i~~Ge~vaIvG~sGsGKSTLl~lL~ 492 (1099)
+.+.+.|+++. .-+++|+.+.|.||+|||||||...++
T Consensus 1063 ~TGi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1063 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 34667888887 579999999999999999999999876
No 356
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.22 E-value=0.057 Score=54.39 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.++|+|++|+|||||++.+.|-.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 479999999999999999988654
No 357
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.10 E-value=0.36 Score=64.94 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=30.1
Q ss_pred CCCceeeeeeE--EEeCCCEEEEEcCCCCchhHHHHHhcCc
Q 001329 456 TGNVLVENLTL--KVEPGSNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 456 ~~~~vL~~vsl--~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.+.+-|+.+-= -+++|+.+.|.||+|||||||..-++.-
T Consensus 366 TGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 366 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 44455666521 3899999999999999999998877653
No 358
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.10 E-value=0.19 Score=59.40 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=54.6
Q ss_pred CCcChHHHHHHHHHH--HHcc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH
Q 001329 577 DELSLGEQQRLGMAR--LFYH---------------KPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA 639 (1099)
Q Consensus 577 ~~LSGGqrQRlaIAR--AL~~---------------~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~ 639 (1099)
..+||||+|-.-+|. +++. .-.++++||+ +-+|.+..+..++++++.|.=+|++|=. ....
T Consensus 378 g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~-~i~p 455 (483)
T 3euj_A 378 SALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE-NISP 455 (483)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS-SCCC
T ss_pred CCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc-hhhh
Confidence 369999999543333 3222 1257999999 9999999999999999999999999977 4445
Q ss_pred hcCEEEEEe
Q 001329 640 FHDVVLSLD 648 (1099)
Q Consensus 640 ~~D~Il~l~ 648 (1099)
+.|.++.+-
T Consensus 456 ~v~~~~~~~ 464 (483)
T 3euj_A 456 ERGTTYKLV 464 (483)
T ss_dssp SSSEEEECC
T ss_pred ccCceEEEE
Confidence 778888764
No 359
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.06 E-value=0.059 Score=52.74 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 360
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.05 E-value=0.065 Score=57.44 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
++-+++|.|++||||||+.+.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999997543
No 361
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.99 E-value=0.061 Score=54.26 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 362
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.99 E-value=0.063 Score=58.98 Aligned_cols=22 Identities=45% Similarity=0.471 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCchhHHHHHhcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~G 493 (1099)
-+++|+|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 363
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.97 E-value=0.072 Score=54.63 Aligned_cols=23 Identities=39% Similarity=0.746 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++|+|++|+|||||++.+.|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998643
No 364
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.95 E-value=0.071 Score=52.90 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 365
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.94 E-value=0.062 Score=53.77 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
No 366
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.92 E-value=0.062 Score=53.91 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 367
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.83 E-value=0.064 Score=54.33 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998863
No 368
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.82 E-value=0.065 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCchhHHHHHhcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~G 493 (1099)
=.++++|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999965
No 369
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.82 E-value=0.066 Score=52.36 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999975
No 370
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.77 E-value=0.11 Score=54.49 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=27.1
Q ss_pred eeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCc
Q 001329 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 460 vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++..-+.+ .|..+.|+||||+|||||...|+.-
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 455554444 6788999999999999999998764
No 371
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.72 E-value=0.064 Score=53.08 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++|+|++|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 372
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.72 E-value=0.072 Score=57.69 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.1
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++++|++|||||||++.+.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999998864
No 373
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.69 E-value=0.33 Score=57.67 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=26.7
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcC
Q 001329 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~G 493 (1099)
|+.+.--+++|+.+.|.|++|+|||||+.-++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 444433589999999999999999999877664
No 374
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.59 E-value=0.09 Score=52.81 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCc
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.=.++++|++|+|||||++.+.+-
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999873
No 375
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.57 E-value=0.072 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 376
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.57 E-value=0.071 Score=53.13 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++|+|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999999985
No 377
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.56 E-value=0.07 Score=53.21 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=24.3
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCcC
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPL 497 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p 497 (1099)
..+..+.|+||+|+|||||++.++.....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34667899999999999999999876643
No 378
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.55 E-value=0.072 Score=52.94 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998763
No 379
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.52 E-value=0.079 Score=56.88 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.|.|-
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 380
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.48 E-value=0.073 Score=53.66 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999763
No 381
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.46 E-value=0.086 Score=53.31 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++++|++|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 382
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.45 E-value=0.083 Score=55.33 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+|-.+.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999997654
No 383
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.44 E-value=0.088 Score=51.56 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=27.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccC
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHR 634 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~ 634 (1099)
+..+|++||.- .|++..+..+.+.+... +..+|.+|++
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 44689999985 58888888888888543 4556666653
No 384
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.42 E-value=0.077 Score=52.78 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 385
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.38 E-value=0.096 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 386
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.31 E-value=0.089 Score=55.46 Aligned_cols=23 Identities=43% Similarity=0.710 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.+.|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997544
No 387
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.29 E-value=0.084 Score=55.04 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999997644
No 388
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.25 E-value=0.12 Score=51.52 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhHHHHHhc
Q 001329 473 NLLITGPNGSGKSSLFRVLG 492 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~ 492 (1099)
.++|+|++|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999999987
No 389
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.22 E-value=0.1 Score=52.78 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 390
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.22 E-value=0.048 Score=64.17 Aligned_cols=43 Identities=26% Similarity=0.260 Sum_probs=33.6
Q ss_pred CCceeeeeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCcCCcc
Q 001329 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500 (1099)
Q Consensus 457 ~~~vL~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G 500 (1099)
+..+++.+ ..+-+|++++|+|++|+|||||++.|++-.....|
T Consensus 138 Gir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~ 180 (473)
T 1sky_E 138 GIKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHG 180 (473)
T ss_dssp SCHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTC
T ss_pred cchHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccC
Confidence 33456655 67789999999999999999999999875543333
No 391
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.21 E-value=0.077 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
No 392
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.20 E-value=0.074 Score=55.41 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 393
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.20 E-value=0.057 Score=56.08 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
-.++|+|++|+|||||++.+.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
No 394
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=91.18 E-value=0.092 Score=58.32 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999974
No 395
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.11 E-value=0.083 Score=54.70 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++|+|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 396
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.07 E-value=0.1 Score=53.29 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 397
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.06 E-value=0.11 Score=54.67 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 398
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.06 E-value=0.085 Score=53.75 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++|+|++|+|||||++.+.+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999975
No 399
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.03 E-value=0.087 Score=53.24 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 400
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.03 E-value=0.094 Score=57.25 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++|+|++|||||||++.+.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998854
No 401
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.02 E-value=0.087 Score=53.79 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 402
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.02 E-value=0.088 Score=52.65 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++|+|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999884
No 403
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.00 E-value=0.1 Score=55.60 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+...+.|.||+|+||||+++.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999998754
No 404
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.99 E-value=0.43 Score=59.64 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=21.2
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.+.++||+|+|||++.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 405
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.96 E-value=0.089 Score=53.15 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 406
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.94 E-value=0.086 Score=53.58 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999753
No 407
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.93 E-value=0.097 Score=59.19 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.++|+||+|||||||.+.|+..+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 799999999999999999987664
No 408
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.92 E-value=0.086 Score=53.38 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++|+|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 589999999999999999976
No 409
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=90.91 E-value=0.1 Score=56.46 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++++|++|||||||++.+.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999998844
No 410
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.86 E-value=0.49 Score=52.98 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=31.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChh
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPA 636 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~ 636 (1099)
+++++|+||+- .|+......+.+.+++. +..+|++|++++
T Consensus 108 ~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 67999999985 47777778888888874 566788888875
No 411
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.85 E-value=0.12 Score=54.81 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998654
No 412
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.85 E-value=0.11 Score=60.23 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=24.0
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 468 VEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
-.+.+.+.|+|++||||||+.+.|+.-+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3567899999999999999999988643
No 413
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.84 E-value=0.088 Score=53.02 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999998763
No 414
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.84 E-value=0.093 Score=52.32 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998874
No 415
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.77 E-value=0.11 Score=52.43 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++++|++|+|||||++.+.+
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999985
No 416
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.77 E-value=0.096 Score=52.89 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++|+|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999875
No 417
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.70 E-value=0.11 Score=53.31 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999763
No 418
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.60 E-value=0.11 Score=57.71 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999874
No 419
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.59 E-value=0.11 Score=55.48 Aligned_cols=28 Identities=18% Similarity=0.333 Sum_probs=22.2
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.+|..+.|.|++||||||+.+.|...++
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999987664
No 420
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.55 E-value=0.1 Score=52.43 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999863
No 421
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.55 E-value=0.11 Score=57.97 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
+..++|+||||||||||...|+.-++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999987553
No 422
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.54 E-value=0.096 Score=53.62 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999999864
No 423
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.53 E-value=0.1 Score=51.88 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCchhHHHHHhcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~G 493 (1099)
=.++++|++|+|||||++.+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999875
No 424
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.53 E-value=0.11 Score=56.89 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCchhHHHHHhcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~G 493 (1099)
..+.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 425
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.52 E-value=0.035 Score=59.87 Aligned_cols=29 Identities=34% Similarity=0.641 Sum_probs=22.9
Q ss_pred eEEEeCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 465 sl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+...++| +.|.||+|+|||||++++++..
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3334444 8899999999999999998743
No 426
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.49 E-value=0.098 Score=53.00 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4899999999999999999864
No 427
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=90.49 E-value=0.12 Score=56.18 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=23.1
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcCcCCccE
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~ 501 (1099)
-.++++|.+|+|||||++.|.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876554444
No 428
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.48 E-value=0.1 Score=52.81 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 429
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.47 E-value=0.1 Score=53.29 Aligned_cols=22 Identities=32% Similarity=0.727 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 430
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.39 E-value=0.13 Score=52.51 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.2
Q ss_pred EEEEEcCCCCchhHHHHHhcCcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.++++|++|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999988544
No 431
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.31 E-value=0.13 Score=53.13 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 432
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.27 E-value=0.13 Score=52.32 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCchhHHHHHhcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~G 493 (1099)
=.++|+|++|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 433
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.26 E-value=0.095 Score=52.38 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=9.3
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988753
No 434
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=90.26 E-value=0.12 Score=57.05 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.2
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++|+|+.|+|||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 435
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.22 E-value=0.11 Score=52.61 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 436
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.21 E-value=0.11 Score=52.21 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999763
No 437
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.21 E-value=0.11 Score=52.72 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998763
No 438
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.19 E-value=0.14 Score=52.25 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998863
No 439
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.19 E-value=0.11 Score=53.80 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++|+|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999998865
No 440
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.17 E-value=0.11 Score=53.19 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++|+|++|+|||||++.+.+
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
No 441
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.16 E-value=0.11 Score=52.42 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++|+|+.|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 442
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.16 E-value=0.13 Score=55.68 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++++|++|+|||||++.+.|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999843
No 443
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.16 E-value=0.11 Score=53.29 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
No 444
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.15 E-value=0.11 Score=52.94 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999763
No 445
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.15 E-value=0.13 Score=53.39 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 446
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.11 E-value=0.11 Score=53.94 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++|+|++|+|||||++.+++-.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999988643
No 447
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.08 E-value=0.049 Score=68.74 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=29.7
Q ss_pred eeEEEeCCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 464 vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.++.+.+|+.++|+||+|||||||+++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 467788999999999999999999999998763
No 448
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.02 E-value=0.11 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 449
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.02 E-value=0.13 Score=57.70 Aligned_cols=25 Identities=28% Similarity=0.608 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999998653
No 450
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=90.01 E-value=0.093 Score=54.29 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998853
No 451
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=89.98 E-value=0.13 Score=55.77 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++++|++|+|||||++.|.|--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998743
No 452
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.93 E-value=0.14 Score=53.98 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=24.4
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
-+|..+.|.|++||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987665
No 453
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=89.86 E-value=0.66 Score=49.54 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=43.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccC-----------hhHHHhcCEEEEEe
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHR-----------PALVAFHDVVLSLD 648 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH~-----------l~~i~~~D~Il~l~ 648 (1099)
.+.+++++||.--..| ..++.+.+.+.|+.||+..+| ..++..||.|..|.
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999998865 667778888889999999999 44677899999885
No 454
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.78 E-value=0.13 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCchhHHHHHhcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~G 493 (1099)
=.++++|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999964
No 455
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.77 E-value=0.056 Score=60.39 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=30.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChh
Q 001329 596 KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPA 636 (1099)
Q Consensus 596 ~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~ 636 (1099)
+++++++|| ...+++..+..+.+.+++. +..+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 677999999 6778998888888888764 345666666554
No 456
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.77 E-value=0.15 Score=54.63 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
+|..+.|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 457
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.73 E-value=0.1 Score=51.93 Aligned_cols=21 Identities=38% Similarity=0.363 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++++|++|+|||||++.+.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 458
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.72 E-value=0.2 Score=51.30 Aligned_cols=26 Identities=38% Similarity=0.328 Sum_probs=22.3
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcC
Q 001329 468 VEPGSNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~G 493 (1099)
--.|.-+.|.|+||+|||||...+..
T Consensus 13 ~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 13 VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 35688899999999999999987764
No 459
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.70 E-value=0.13 Score=52.02 Aligned_cols=21 Identities=43% Similarity=0.488 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++|+|++|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 589999999999999988764
No 460
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.69 E-value=0.13 Score=53.01 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCchhHHHHHhcCc
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
-.++|+|++|+|||||++.+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998753
No 461
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=89.59 E-value=0.14 Score=55.96 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.2
Q ss_pred EEEEEcCCCCchhHHHHHhcCcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
.++|+|++|+|||||++.|.|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 462
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.56 E-value=0.13 Score=50.35 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.+..+.|.||+|+|||++.+.|.....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 455689999999999999999987543
No 463
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.53 E-value=0.13 Score=53.28 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 464
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.44 E-value=0.13 Score=52.61 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 465
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.44 E-value=0.13 Score=55.44 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=24.2
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
+++..++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4677899999999999999999987764
No 466
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.33 E-value=0.21 Score=52.63 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.9
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhc
Q 001329 467 KVEPGSNLLITGPNGSGKSSLFRVLG 492 (1099)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~ 492 (1099)
-+++|+.+.|.|++|+|||||+--++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999999999986543
No 467
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.32 E-value=0.16 Score=54.04 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
+|..++|.|+.||||||+.+.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999987664
No 468
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.31 E-value=0.18 Score=53.20 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
+|..+.+.|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
No 469
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.17 E-value=0.18 Score=55.33 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
+..+.|.||+|+||||+++.++..+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999987664
No 470
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.13 E-value=0.15 Score=51.64 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999853
No 471
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.09 E-value=0.74 Score=62.79 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=30.8
Q ss_pred CCCceeeeeeE--EEeCCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 456 TGNVLVENLTL--KVEPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 456 ~~~~vL~~vsl--~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.+.+-|+.+-= -+++|+.+.|.||+|+|||||+.-++.-..
T Consensus 366 TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a 408 (2050)
T 3cmu_A 366 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (2050)
T ss_dssp CSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34445555421 389999999999999999999887765443
No 472
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.09 E-value=0.18 Score=53.71 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.7
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
.+|..+.|.|++||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999987664
No 473
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.08 E-value=0.33 Score=60.66 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=0.0
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCcCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhccCCCCCCcCCcCCH
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH 548 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~~r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~ 548 (1099)
+|.-.+.|.||+|+|||++.+.++... ..--+.++.
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l--~~~~~~i~~------------------------------------------ 521 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKAL--GIELLRFDM------------------------------------------ 521 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHH--TCEEEEEEG------------------------------------------
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHh--cCCEEEEec------------------------------------------
Q ss_pred HHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcE-
Q 001329 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTS- 627 (1099)
Q Consensus 549 ~~i~~~l~~~~l~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~T- 627 (1099)
.+..+......++...| ...|-+..+.-....-...+.++++||.- .+++.....+.+.+++...|
T Consensus 522 ---s~~~~~~~~~~l~g~~~---------g~~g~~~~~~l~~~~~~~~~~vl~lDEi~-~~~~~~~~~Ll~~le~~~~~~ 588 (758)
T 1r6b_X 522 ---SEYMERHTVSRLIGAPP---------GYVGFDQGGLLTDAVIKHPHAVLLLDEIE-KAHPDVFNILLQVMDNGTLTD 588 (758)
T ss_dssp ---GGCSSSSCCSSSCCCCS---------CSHHHHHTTHHHHHHHHCSSEEEEEETGG-GSCHHHHHHHHHHHHHSEEEE
T ss_pred ---hhhcchhhHhhhcCCCC---------CCcCccccchHHHHHHhCCCcEEEEeCcc-ccCHHHHHHHHHHhcCcEEEc
Q ss_pred ------------EEEEccC------------------------------hhHHHhcCEEEEEeC
Q 001329 628 ------------CITISHR------------------------------PALVAFHDVVLSLDG 649 (1099)
Q Consensus 628 ------------vI~ItH~------------------------------l~~i~~~D~Il~l~~ 649 (1099)
+|++|+. .++....|.++.+..
T Consensus 589 ~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 652 (758)
T 1r6b_X 589 NNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDH 652 (758)
T ss_dssp TTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCC
T ss_pred CCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCC
No 474
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.01 E-value=0.17 Score=57.06 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=25.9
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCcCC
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPLV 498 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~ 498 (1099)
.+|..+.|.||+|+||||+++.++......
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 457789999999999999999999877543
No 475
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.01 E-value=0.19 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.727 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 476
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=88.94 E-value=0.097 Score=53.31 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=4.3
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988764
No 477
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.93 E-value=0.19 Score=53.08 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=25.9
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcCcCcC
Q 001329 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPL 497 (1099)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p 497 (1099)
.+|..+.+-|++||||||+.+.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999887664
No 478
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.88 E-value=0.18 Score=56.20 Aligned_cols=25 Identities=32% Similarity=0.608 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
..+.|+||+|||||||...|+.-++
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC
Confidence 4789999999999999999987653
No 479
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.77 E-value=0.081 Score=61.86 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcCcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLWPL 497 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p 497 (1099)
.+++|+|++|+||||++..|++.+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987763
No 480
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.75 E-value=0.00068 Score=74.11 Aligned_cols=58 Identities=12% Similarity=-0.019 Sum_probs=46.8
Q ss_pred CCcChHHHHHHHHHHHHccCCCE--EEEeCCCCCCCHHHHH---------HHHHHHHh--cCcEEEEEccChh
Q 001329 577 DELSLGEQQRLGMARLFYHKPKF--AILDECTSAVTTDMEE---------RFCAKVRA--MGTSCITISHRPA 636 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~i--liLDEpTSaLD~~~~~---------~l~~~l~~--~g~TvI~ItH~l~ 636 (1099)
..+|+| ||+++|++++.+|++ +|+||+|+++|...+. ...+.++. .|.|.+.++||++
T Consensus 171 ~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 171 LPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 241 (261)
T ss_dssp ECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHHC
T ss_pred EecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHHh
Confidence 457899 999999999999999 9999999999987432 24444443 5899999999876
No 481
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.47 E-value=0.17 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++-+++-
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 482
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.46 E-value=0.16 Score=53.68 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=23.4
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 468 VEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+++..++.|+||.||||+|..+.|+.-+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455788999999999999999998544
No 483
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.44 E-value=0.21 Score=50.99 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=29.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChh
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPA 636 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~ 636 (1099)
.+|.++++||.- .++......+.+.+.+. +..+|++|++..
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 368999999964 46777777788877763 455666666543
No 484
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=88.43 E-value=0.12 Score=59.12 Aligned_cols=51 Identities=18% Similarity=0.386 Sum_probs=38.3
Q ss_pred EEEEeeEEEcCCCCceee-----------eeeEEEeCCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 445 IEFSGVKVVTPTGNVLVE-----------NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 445 I~~~~v~~~y~~~~~vL~-----------~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
..|++++--+|..+.-++ |.=+.+.+|++.+|+|++|+|||||+..|+.-.
T Consensus 138 ~~fe~l~Pi~P~~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 138 VNFDNLTPDYPRERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CCGGGSCEECCCSBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cccccCCCCCchhhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 345555555555444445 566788999999999999999999999888753
No 485
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.32 E-value=0.096 Score=59.60 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=22.9
Q ss_pred CCCcChHHHHHHHHHHHH---cc--CCCEEEEeCCC
Q 001329 576 GDELSLGEQQRLGMARLF---YH--KPKFAILDECT 606 (1099)
Q Consensus 576 g~~LSGGqrQRlaIARAL---~~--~P~iliLDEpT 606 (1099)
|..+|+||+||.+|+|+| ++ +++++++||||
T Consensus 294 g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 294 GLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 457999999999999999 77 89999999997
No 486
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.14 E-value=0.19 Score=51.62 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++|+|++|+|||||++.+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 589999999999999999875
No 487
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.04 E-value=0.21 Score=56.48 Aligned_cols=24 Identities=50% Similarity=0.786 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
..+.|.||+|+||||+.++|+...
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999876
No 488
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=87.99 E-value=0.22 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCchhHHHHHhcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~G 493 (1099)
=.++++|++|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3689999999999999987763
No 489
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.97 E-value=0.24 Score=55.33 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+..-+.|.||+|+|||+|+++++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 44678999999999999999999865
No 490
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=87.89 E-value=0.21 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 491
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=87.83 E-value=0.2 Score=54.11 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCc
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
+...+.|.||+|+|||||++.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3346899999999999999999875
No 492
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=87.81 E-value=0.15 Score=59.86 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=23.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEcc
Q 001329 595 HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISH 633 (1099)
Q Consensus 595 ~~P~iliLDEpTSaLD~~~~~~l~~~l~~~g~TvI~ItH 633 (1099)
.++.+|++||.-. ++...+..+...+++...++|..|.
T Consensus 105 ~~~~iLfIDEI~~-l~~~~q~~LL~~le~~~v~lI~att 142 (447)
T 3pvs_A 105 GRRTILFVDEVHR-FNKSQQDAFLPHIEDGTITFIGATT 142 (447)
T ss_dssp TCCEEEEEETTTC-C------CCHHHHHTTSCEEEEEES
T ss_pred CCCcEEEEeChhh-hCHHHHHHHHHHHhcCceEEEecCC
Confidence 4688999999854 5666667778888776666666663
No 493
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.73 E-value=0.23 Score=54.07 Aligned_cols=25 Identities=40% Similarity=0.664 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 471 GSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+..+.|.||+|+||||+++.++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999866
No 494
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.70 E-value=0.22 Score=57.49 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcCc
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLWP 496 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1099)
..++|+||||||||||.+.|+.-++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4689999999999999999987553
No 495
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=87.55 E-value=0.11 Score=53.13 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhHHHHHhcCc
Q 001329 473 NLLITGPNGSGKSSLFRVLGGL 494 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl 494 (1099)
.++|+|++|+|||||++.+.+-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998863
No 496
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=87.53 E-value=0.26 Score=54.82 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
+...+.|.||+|+|||+|+++++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 44568999999999999999998753
No 497
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=87.50 E-value=0.22 Score=51.72 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchhHHHHHhcC
Q 001329 473 NLLITGPNGSGKSSLFRVLGG 493 (1099)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~G 493 (1099)
.++|+|++|+|||||++.+.+
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999998875
No 498
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.49 E-value=0.29 Score=52.62 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcCcCcC
Q 001329 470 PGSNLLITGPNGSGKSSLFRVLGGLWPL 497 (1099)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p 497 (1099)
.+..+.|.||+|+|||++++.|....+.
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 3567899999999999999999986653
No 499
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.37 E-value=0.0019 Score=74.21 Aligned_cols=59 Identities=10% Similarity=-0.055 Sum_probs=46.9
Q ss_pred CCcChHHHHHHHHHHHHccCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHh--cCcEEEEEccChhH
Q 001329 577 DELSLGEQQRLGMARLFYHKPKF--AILDECTSAVTTD----M-----EERFCAKVRA--MGTSCITISHRPAL 637 (1099)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~i--liLDEpTSaLD~~----~-----~~~l~~~l~~--~g~TvI~ItH~l~~ 637 (1099)
..+|+| ||++||++++.+|++ +|+||+|++||.. + +....++++. .|.|.+.++||++.
T Consensus 282 ~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 282 LPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 356899 899999999999999 9999999999965 2 1224455553 49999999999873
No 500
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.24 E-value=0.26 Score=54.20 Aligned_cols=24 Identities=29% Similarity=0.131 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCchhHHHHHhcCcC
Q 001329 472 SNLLITGPNGSGKSSLFRVLGGLW 495 (1099)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1099)
..+.|.||+|+|||+|.++|+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457888999999999999999765
Done!