BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001330
(1099 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224125030|ref|XP_002319485.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222857861|gb|EEE95408.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1001
Score = 1081 bits (2795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/1008 (57%), Positives = 735/1008 (72%), Gaps = 25/1008 (2%)
Query: 93 FDTIQTKVAPTLFLALSTIPHLSLVSYLGLDGLSFSYFNDGDQTLAVYSNSSFAANWYTQ 152
F +++ VAPTLFLALSTIP LS VSY+GLDGL FS++ND DQT ++YSN+SF++ W+TQ
Sbjct: 8 FRSLKAIVAPTLFLALSTIPELSQVSYIGLDGLLFSFYNDEDQTFSIYSNTSFSSQWFTQ 67
Query: 153 PVNRDTGMLYGNAIASIPIVSANASWFQEVINSTNGYSSLVTGLNKEEGSIFLHTFAMDG 212
PVNRDTG LYG+A+AS P V+ N+SWFQ+ +NST+G+SS+ TG NK + S+FL+T A+DG
Sbjct: 68 PVNRDTGKLYGDAVASDPKVTVNSSWFQKALNSTSGHSSMDTGWNKAQDSLFLNTAAVDG 127
Query: 213 TGFISLGFPAKVVIDLFAALDFHGGDLHLAAADGQVIIQTKLQNTEMVIYNSTLLLQKLN 272
G +SLGFP +VVI+ FAALDFHGG HL A+GQV++QTKL N+++ I+N T+++Q +
Sbjct: 128 RGVVSLGFPVEVVINHFAALDFHGGFFHLGTANGQVVVQTKLPNSQIEIHNDTVMVQTMK 187
Query: 273 DDDSPEGSIANHSCVSDKGNPTKFNMKIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGS 332
+ P G N SC + G + KI+G KY+FYCSTL IAG++SVYVLAY NGL
Sbjct: 188 RNGDPLGHY-NISCDPEDGRLRPLHKKIVGIKYMFYCSTLDIAGLKSVYVLAYPRNGLVH 246
Query: 333 LVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSM 392
LV RN+ LSL+LL L+FI VISL ++ L A+A REMFLCA+LIKQ AT+QAERKSM
Sbjct: 247 LVHRNSMLSLLLLALVFIFIVISLCTYLFLTARATNREMFLCASLIKQTEATQQAERKSM 306
Query: 393 NKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVME 452
NKT A A A+HDVR SLAA+ + C E+ANP + LA L + +KDLLGILNS+++
Sbjct: 307 NKTKAFAGANHDVRNSLAAVRASIHFCQEEANPESKLAAQLVQLENHTKDLLGILNSILD 366
Query: 453 MSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRV 512
MSKIEAGK L E+FNLA+LLEEVVDM+Y +G+ KG+D+VLDPCDGS L S +VRGDR+
Sbjct: 367 MSKIEAGKTSLEIEDFNLAELLEEVVDMFYPLGMNKGIDIVLDPCDGSTLKSANVRGDRL 426
Query: 513 KLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGF 572
KLKQILCNLV+N++KFTSEGH+S+R VKKK+F+++IIASNR + K LS+ ++N++ F
Sbjct: 427 KLKQILCNLVNNAIKFTSEGHVSIRTVVKKKNFRKEIIASNRTTVMKFLSRFCYKNQDSF 486
Query: 573 DDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632
+DLDAL++VE NPN ++FEFEVDDTGKGIPKDKQ S+FE++VQVKETA G QEG GLGLG
Sbjct: 487 NDLDALNTVEENPNEVEFEFEVDDTGKGIPKDKQKSLFEDYVQVKETATG-QEGTGLGLG 545
Query: 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGL 692
IVQS+V +MKGE+ I +KE GERG CF+FNV L++V + EED R+ +
Sbjct: 546 IVQSLVRVMKGELRIVEKELGERGTCFKFNVFLSSV--EPKSAEPEEDRRS------SAF 597
Query: 693 HQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKV 752
HQHF + K EGS +I+FI GEERR+VLK+YIE LNIKVTI+KQ NL EL KV
Sbjct: 598 HQHFPFM---SPKPEGSHVIIFIPGEERRKVLKKYIER-LNIKVTIIKQVMNLQLELEKV 653
Query: 753 KRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDDYDNVSPHSKKASSKC 812
KRK+D S + KPE++L D L+ SAS++SD G D +L+IKD+ D+++PH KK +SK
Sbjct: 654 KRKLDLSYF-ISGKPENTLDDYLSKSASTNSDRGSLDGSLNIKDEGDHITPHYKKTNSKS 712
Query: 813 LSSFTLVVIDAT-AGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREY---RLL 868
SS L+VID A S ILAN ++D+ CKVVW+++ ++ HS + R+
Sbjct: 713 SSSIILLVIDVNEATSYPNFQNILANLRKDIGKSLCKVVWLEDPIM--GHSSDEVKDRVT 770
Query: 869 PICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKS 928
D+V+ +P HGS L +VL LLPE KGAS NF K + QE+Q C D N N L
Sbjct: 771 AEGDYVLHKPLHGSCLSQVLSLLPERKGASHCNFSKSTRRTTVQEVQDCADSNLSNDLSC 830
Query: 929 FGAEAGASISSHCSSLQQVAAQSDG-KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGA 987
S SSLQ A + KPLNGK LVVED ++ ++TS+VL KLGA
Sbjct: 831 SEIIELDLASPQSSSLQPTTANKPTVEAGSKPLNGKNVLVVEDSMLLQRLTSSVLKKLGA 890
Query: 988 KFEVCRNGKEAFDHVCKILSDLRKEGK--ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQ 1045
EVC NGKEAFD V K LSD +KEG +LPYD I MDCEMPVMNG+EATRLIR EEEQ
Sbjct: 891 SVEVCTNGKEAFDEVSKSLSDQKKEGDSISLPYDIIFMDCEMPVMNGFEATRLIRMEEEQ 950
Query: 1046 YD-VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
Y VHIPIIALTAHAM SK+ DAGMDFHLTKPL++ K+L+V+ SI
Sbjct: 951 YSGVHIPIIALTAHAMPEQTSKVFDAGMDFHLTKPLEERKMLEVILSI 998
>gi|255542874|ref|XP_002512500.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223548461|gb|EEF49952.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 912
Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/927 (56%), Positives = 648/927 (69%), Gaps = 23/927 (2%)
Query: 171 IVSANASWFQEVINSTNGYSSLVTGLNKEEGSIFLHTFAMDGTGFISLGFPAKVVIDLFA 230
+++ NASWF++ NST+GYSS+ TG N+ + S+FL+T AMDG G ISLGFP K +ID F+
Sbjct: 1 MLTINASWFEKAKNSTSGYSSIGTGWNRAQDSLFLNTAAMDGRGVISLGFPTKAIIDNFS 60
Query: 231 ALDFHGGDLHLAAADGQVIIQTKLQNTEMVIYNSTLLLQKLNDDDSPEGSIANHSCVSDK 290
ALDFHGG +L DGQVI+QT +T++ + N ++ +Q N + G N SC S
Sbjct: 61 ALDFHGGYFYLGTVDGQVIMQTIPPDTQIDMLNGSVTVQIFNPNGGKMGQ-DNLSCFSVD 119
Query: 291 GNPTKFNMKIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFI 350
G + KI+G +YIFYCS L IAGVQSVYVLAY +GL +LV RN KLS +LL L+F+
Sbjct: 120 GKLRPLHGKIVGNRYIFYCSNLYIAGVQSVYVLAYPRDGLVNLVQRNIKLSTILLALVFV 179
Query: 351 AGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLA 410
S +++++ +A KREMFLCAALIKQ AT+QAERKSMNKT A A A+HDVRASLA
Sbjct: 180 FIFTSFLIYMVMTVRATKREMFLCAALIKQTEATQQAERKSMNKTKAYAGANHDVRASLA 239
Query: 411 AIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNL 470
AI GL+ELC +D G++LA NL ++ C++DLL ILNSV++MSKIEAGK L EEFNL
Sbjct: 240 AITGLIELCQDDVKSGSELATNLDQMQNCTRDLLEILNSVLDMSKIEAGKTSLEIEEFNL 299
Query: 471 AQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTS 530
AQLLE+VV MYY +G+KK VD+VLDPCD S L VRGDR+KLKQILCNL+SN++KFTS
Sbjct: 300 AQLLEDVVGMYYPLGMKKCVDIVLDPCDASKLPD--VRGDRIKLKQILCNLLSNAIKFTS 357
Query: 531 EGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQF 590
GH+SVRA VKKK+ +++IIAS+ + K LS + RNK+ DLDA H+V+ NPN ++F
Sbjct: 358 AGHVSVRAVVKKKNIEKEIIASSTTAL-KFLSWMRRRNKDACTDLDAFHTVKENPNEMEF 416
Query: 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
EFEVDDTG+GIPKDKQ SIFE++VQVKETA+G QEG GLGLGIVQS+V +MKGE+ I +K
Sbjct: 417 EFEVDDTGQGIPKDKQTSIFEDYVQVKETAIG-QEGCGLGLGIVQSLVRVMKGELTIIEK 475
Query: 651 EPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQ 710
EPGERG CFRFNV L+ + P +G HQHF + KSEGS
Sbjct: 476 EPGERGTCFRFNVFLSTCESESFSTEESR--------PSSGFHQHFQFM---SPKSEGSH 524
Query: 711 MILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESS 770
MILFI G+ERRRVLKRYIE SLNIKVTI+K + EL K+KR++D S + K +SS
Sbjct: 525 MILFIKGDERRRVLKRYIE-SLNIKVTIIKHGRYFRSELEKIKRRLDLSYFA-SGKTDSS 582
Query: 771 LVDSLTMSASSSSDTGHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATA-GSVS 829
VD L+ S SS SD + L IKD D+ P KK +SK S L VID+ A S
Sbjct: 583 SVDYLSASTSSHSDPEANSKRLSIKDGADSGLPQFKKTNSKSSSGIILFVIDSDAVSSYR 642
Query: 830 ELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREY-RLLPICDHVISRPFHGSRLIEVL 888
E L +F++D+ SCKVVW+D+ + R A S+E R + D+V +PFHGSRL +VL
Sbjct: 643 EFEHTLVSFRKDIIKSSCKVVWLDDQISRQAGSQEQDRRISEGDYVTYKPFHGSRLTQVL 702
Query: 889 KLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVA 948
LLPE KG Q N PK S QEL+ D N N S E + S H SS QQV
Sbjct: 703 SLLPERKGNLQCNLPKSTTGLSIQELRTSVDLNLSNVSSSSTFEIDITSSYHRSSFQQVV 762
Query: 949 A-QSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILS 1007
+ D K ++KPLNGKK LVVED ++ ++ + LGKLGA E C NG+EA VCK LS
Sbjct: 763 MNKPDEKHNDKPLNGKKVLVVEDAELLRRIVTTTLGKLGANVEACTNGEEALTQVCKALS 822
Query: 1008 DLRKEG--KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVAS 1065
D +KEG K++PYDYI MDCEMPVMNG+EATRLIR EE ++DVHIPIIALTAHAM AS
Sbjct: 823 DQKKEGDSKSIPYDYIFMDCEMPVMNGYEATRLIRIEERKHDVHIPIIALTAHAMPEEAS 882
Query: 1066 KIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
K +DAGMDFHL KPLQ DKLL V++SI
Sbjct: 883 KSIDAGMDFHLNKPLQVDKLLGVIQSI 909
>gi|224130996|ref|XP_002320976.1| predicted protein [Populus trichocarpa]
gi|222861749|gb|EEE99291.1| predicted protein [Populus trichocarpa]
Length = 1130
Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/1156 (42%), Positives = 691/1156 (59%), Gaps = 106/1156 (9%)
Query: 9 RLCPKIVLRPLCFLIFLGFCAFGTLKI-------WLMTIK--------TAHEIKQEASGV 53
+L I RP+ I L G L + W IK AH ++ SG+
Sbjct: 2 KLSSLIASRPVIIFIIL---VIGVLLLPCVVVPWWYNMIKHMKKHMDFNAHVVQ---SGL 55
Query: 54 LNNSFSEIETTARLLLPLNSSAFNLARSLSSYLNGTELSFDTIQTKVAPTLFLALSTIPH 113
L SEIE A+ L P+NSSA NLA+ +SS +NG++LS ++ KVAP+LF A S IP
Sbjct: 56 L----SEIENIAKYLHPINSSAINLAKVMSSSINGSKLSSYDVENKVAPSLFQAFSIIPF 111
Query: 114 LSLVSYLGLDGLSFSYFNDGDQTLAVYSNSSFAAN-----WYTQPVNRDTGMLYGNAIAS 168
+S +SY+GL GL FSY+ +G+QT A+YSNS+ A+N WY QPV+ DTG +YG+A+ S
Sbjct: 112 ISQISYIGLGGLFFSYYYEGNQTFAMYSNST-ASNERNFSWYRQPVDSDTGRVYGDAVKS 170
Query: 169 IPIVSANASWFQEVINSTNGYSSLVTGLNKEEGSIFLHTFAMDGTGFISLGFPAKVVIDL 228
+P + NASW ++ +NS+ GY+S +G N + +FL+T ++ G G +SLGF AK +
Sbjct: 171 LPFIKTNASWIEQALNSSQGYASFESGWNDAQDPLFLNTVSLRGQGALSLGFSAKALTSF 230
Query: 229 FAALDFHGGDLHLAAADGQVIIQTKLQNTEMVIYNST--LLLQKLNDDDSPEGSIANHSC 286
++ +GG L+LA G+V++ L NT+ VI ++ L + KLN D + N SC
Sbjct: 231 LNNVELYGGSLYLATQSGKVLV-GGLPNTQTVIKENSVSLYMTKLNGDQIDH--VGNVSC 287
Query: 287 VSDKGNPTKFNMKIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLV 346
+ + G + + KY +CS ++I GVQSVY LA+ NGL S V+R+ K+SL+L +
Sbjct: 288 MPNNGKLEDSVLYLGEAKYRVFCSRVEIVGVQSVYALAFPYNGLASSVNRSIKISLILFI 347
Query: 347 LMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVR 406
+M A IS+ FI+L+ ++A+REM LC+ LIKQM AT+QAERKSMNK+ A A ASHD+R
Sbjct: 348 IMIAAIFISIVSFILLVVRSARREMHLCSTLIKQMEATQQAERKSMNKSLAFATASHDIR 407
Query: 407 ASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEE 466
A+LA I GL+E+C+ + G++L NL + C+KDL+G+LNS+++ SKIEAGKM+L EE
Sbjct: 408 AALAGITGLIEICYAEVRAGSELDTNLRQMDGCTKDLVGLLNSILDTSKIEAGKMQLEEE 467
Query: 467 EFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSM 526
EF+LA+LLE+ VD+Y+ VG+KKGVDVVLDP DGS+L V+GDR KLKQ+LCNL+SN++
Sbjct: 468 EFDLAKLLEDAVDLYHPVGMKKGVDVVLDPYDGSILKHSRVKGDRGKLKQVLCNLLSNAV 527
Query: 527 KFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPN 586
KFT EGH+SVRA +K S + I+ASN+N + +C S LF +NK+ F+ + S
Sbjct: 528 KFTFEGHVSVRAWTQKPSLENKIMASNQNGLWRCFSCLFSKNKKEFNAMKPKQSS----- 582
Query: 587 LLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIA 646
++F FEV+DTGKGIPK+KQ S+FE FVQVKETAL Q G GLGLGIVQS+V LM GEI
Sbjct: 583 -MEFVFEVNDTGKGIPKEKQKSVFENFVQVKETAL-GQGGTGLGLGIVQSLVRLMGGEIG 640
Query: 647 IADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFA--------- 697
I +KE GE+G CF+FNV L +CE D + D G H +
Sbjct: 641 IVNKENGEKGTCFKFNVFLD-ICEISSTDNKNAEVEIEGDSMPGGEHNYSELTIRTPSPG 699
Query: 698 ----------SFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQ 747
S GS+ K EGS ++L I EER R ++YIE L IKV+ VK+ ++LH
Sbjct: 700 LVIRTPSPRLSILGSSPKIEGSHVVLLIQNEERLRSSQKYIE-GLGIKVSSVKEWEHLHS 758
Query: 748 ELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDT-GHHDVALDIKDDYDNVSPHSK 806
L+++K + + S P SS S S S ++ DV L D D S
Sbjct: 759 TLKRIKARQNVS-------PHSSSGKSDLGSRSDHFNSRSMKDVPLSSMDGIDQKPSASG 811
Query: 807 KASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIR--NAHSRE 864
++ + F L+VIDA AG EL +++A FKRD+ S CKVVW+D R N S E
Sbjct: 812 SSNLRGAPGFVLLVIDAGAGPFQELCRVVAEFKRDLHSSCCKVVWLDKPTSRSINLRSFE 871
Query: 865 YRLLPICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLN 924
L+ D ++ +PFHGSRL +V++LLPE G + K E + Q DP +
Sbjct: 872 QDLIDPRDDILLKPFHGSRLYQVIRLLPEFGG--HELISRSKRENAIQATNALKDPGSSS 929
Query: 925 KLKSFGAEAGASISSHC-SSLQQVAAQSDGKCSE-------------------------K 958
S + + S C +S QQV +Q++G K
Sbjct: 930 STHS--QKTKLKVPSTCENSFQQVDSQAEGSSKNEKNRKNPLLDDPDHSHVRSKSRHKGK 987
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA--L 1016
L+G KFLV +D+ I +VT +L GA EVC NG+EAF V L + R+ + L
Sbjct: 988 SLSGLKFLVADDNEISRRVTRHILKGHGATVEVCENGEEAFQLVRIGLHNQREHSHSIVL 1047
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
PYDYI+MDCEMP M+G EATR IRKEE+ Y VHIPI+A +A G K+ +AG D +
Sbjct: 1048 PYDYILMDCEMPKMDGCEATRQIRKEEKFYGVHIPILAFSADNSGGEGKKMEEAGTDGRV 1107
Query: 1077 TKPLQKDKLLDVVKSI 1092
K + ++L + +++I
Sbjct: 1108 NKKINMEQLEETIRNI 1123
>gi|225437547|ref|XP_002270319.1| PREDICTED: histidine kinase CKI1-like [Vitis vinifera]
Length = 1110
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/1120 (42%), Positives = 693/1120 (61%), Gaps = 54/1120 (4%)
Query: 9 RLCPKIVLRPLCFLIFLGFCAFG----TLKIWLMTIK-TAHEIKQEASGVLNNSFSEIET 63
++ IVLRP+CF L F + +W TIK H+ K + + SEI++
Sbjct: 2 KIASMIVLRPVCFFALLAFLVLLLPSVVIPLWYDTIKKIEHDAKLSSQKLHTELLSEIKS 61
Query: 64 TARLLLPLNSSAFNLARSLSSYLNGTELSFDTIQTKVAPTLFLALSTIPHLSLVSYLGLD 123
TA L+ P+N+SA NLAR L++ ++G +L F I+ +VAP LF ALS PH+S +SY+G+D
Sbjct: 62 TAELVHPMNASAMNLARVLNASVSGMKLPFSEIKNRVAPMLFQALSITPHVSQISYIGID 121
Query: 124 GLSFSYFNDGDQTLAVYSNS----------SFAANWYTQPVNRDTGMLYGNAIASIPIVS 173
GL FSY+ G + A+YSNS + A WY Q + DTG LYG I S P+V
Sbjct: 122 GLLFSYYAHGSEIFALYSNSSISVNSSSPNATAYTWYIQRADSDTGKLYGKVITSPPLVV 181
Query: 174 ANASWFQEVINSTNGYSSLVTGLNKEEGSIFLHTFAMDGTGFISLGFPAKVVIDLFAALD 233
NASWF+E +NSTNGYSSL T N + +FL+T +DG G +SLGFP K V D + +D
Sbjct: 182 VNASWFEEAMNSTNGYSSLGTEWNSVQ-DLFLNTAKVDGRGAVSLGFPVKEVTDFLSVID 240
Query: 234 FHGGDLHLAAADGQVIIQTKLQNTEMVIYNSTLLLQKLNDDDSPEGS-IANHSCVSDKGN 292
H G L LA D +V+I+ L NT++++ N ++ + + + D + S + N SC +D
Sbjct: 241 LHDGSLCLATEDNKVLIEG-LPNTQIMVSNDSISFKVVENQDGDQISHVGNVSCKADDRT 299
Query: 293 PTKFNMKIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAG 352
P + I K Y+ YCS L+I GV+SVY LA+ GL S V ++++ +L+L ++M +
Sbjct: 300 PKASVLNISNKDYVVYCSQLEIMGVKSVYALAFPYRGLESRVHKSSRSALILHIVMVVIM 359
Query: 353 VISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAI 412
VI + +F+ L+ AA+REM+L A LIKQM+AT+QAERKSMNK+ A A ASHDVRASLA +
Sbjct: 360 VILVSMFMFLLVGAARREMYLRAKLIKQMDATQQAERKSMNKSLAFASASHDVRASLAGL 419
Query: 413 IGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQ 472
GL+++ ++ PG+++ NL + C+KDLLGILNS+++ SKIEAGKM+L EEEFNL +
Sbjct: 420 TGLIDISKDEVAPGSEIETNLIQMEGCTKDLLGILNSILDTSKIEAGKMQLEEEEFNLEE 479
Query: 473 LLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG 532
LLE+VVD+Y+ VG+KKGVDVVLDP DGSV V+GDR+KLKQ+LCNL+SN++KFTSEG
Sbjct: 480 LLEDVVDLYHPVGMKKGVDVVLDPHDGSVAKFSRVKGDRMKLKQVLCNLLSNAVKFTSEG 539
Query: 533 HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEF 592
H+S+RA KK S + ++AS++ + L F +N E F DL+A + V++NPN ++F F
Sbjct: 540 HVSIRAWAKKPSSESSVLASSQKSMLNRLWSFFCKNNEAFKDLEASNKVQKNPNCMEFVF 599
Query: 593 EVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEP 652
EVDDTGKG+PK+KQ S+FE +VQVKETALG IVQS+V LM G+I I DKE
Sbjct: 600 EVDDTGKGVPKEKQKSVFENYVQVKETALGTGGTGLGLG-IVQSLVRLMGGDIGIVDKEI 658
Query: 653 GERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQ--------------HFAS 698
G +G CFRFN+ LT EED + +Q + +
Sbjct: 659 GAKGTCFRFNIFLTTCDTVPSDHGKEEDIEAQGHATSSYSYQPLDLRIQSTCNPGLNILT 718
Query: 699 FWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMD- 757
+ ++EGS +I+ + +ERRR+ +R E +L IKV+++K+ + L+K++RK+
Sbjct: 719 SPRPSPRAEGSHVIILMQSDERRRITQRLFE-TLGIKVSVLKEWERFLYALKKIRRKVSL 777
Query: 758 --PSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDDYDNVSPHSKKASSKCLSS 815
SS G +E S S SS+ G D+ L D D P +K ++
Sbjct: 778 SHRSSSGISE-----FSPRSFRSGSFSSNAGPKDMPLSAMDGTDLTLPTPRKTYARGTPR 832
Query: 816 FTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREY--RLLPICDH 873
F L++I+ATAG EL + +A F++D+ + C+ VW+D +R+ + R+ ++ D
Sbjct: 833 FILILIEATAGPFPELCRAVAEFRKDLQNTCCRAVWLDKPTLRSVNFRDVPEEMISPNDL 892
Query: 874 VISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEA 933
V+ +PFHGSRL +V KLLPE G P L + A SQ + +P+ L+ L +
Sbjct: 893 VMLKPFHGSRLYQVAKLLPEFGG------PMLGISAISQVGKAGPEPS-LSSLPTTNRTT 945
Query: 934 GASISSHCSSLQQVAAQSDGKCS-EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVC 992
S +++ Q G S + PL GK+ L+ ED ++ K+ +A + +LG E C
Sbjct: 946 PRKSRSRVRLVKEPEIQEVGTSSNQNPLRGKRVLIAEDSMVLCKLATAHVTRLGGTVEAC 1005
Query: 993 RNGKEAFDHVCKILSDLRKEGKA--LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHI 1050
NG +A + VC L + K + LPYDYI+MDCEMP M+G+EAT+ IR+EE+QY VHI
Sbjct: 1006 DNGAKAVELVCNGLRNNTKNNASIILPYDYILMDCEMPEMDGYEATKRIREEEQQYGVHI 1065
Query: 1051 PIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
PIIALTAHA A + ++AGMD+HL+KPL+++ L+ ++
Sbjct: 1066 PIIALTAHANGEEAKRTIEAGMDYHLSKPLKRETLMGAIE 1105
>gi|147861778|emb|CAN78916.1| hypothetical protein VITISV_032223 [Vitis vinifera]
Length = 1143
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/1097 (42%), Positives = 682/1097 (62%), Gaps = 60/1097 (5%)
Query: 33 LKIWLMTIKT-AHEIKQEASGVLNNSFSEIETTARLLLPLNSSAFNLARSLSSYLNGTEL 91
+ +W TIK H+ K + + SEI++TA L+ P+N+SA NLAR L++ ++G +L
Sbjct: 63 IPLWYDTIKKIEHDAKLSSQKLHTELLSEIKSTAELVHPMNASAMNLARVLNASVSGMKL 122
Query: 92 SFDTIQTKVAPTLFLALSTIPHLSLVSYLGLDGLSFSYFNDGDQTLAVYSNS-------- 143
F I+ +VAP LF ALS PH+S +SY+G+DGL FSY+ G + A+YSNS
Sbjct: 123 PFSEIKNRVAPMLFQALSITPHVSQISYIGIDGLLFSYYAHGSEIFALYSNSSISVNXSS 182
Query: 144 --SFAANWYTQPVNRDTGMLYGNAIASIPIVSANASWFQEVINSTNGYSSLVTGLNKEEG 201
+ A WY Q + DTG LYG I S P+V NASWF+E +NSTNGYSSL T N +
Sbjct: 183 PNATAYTWYIQRADSDTGKLYGKVITSPPLVVVNASWFEEAMNSTNGYSSLGTEWNSVQ- 241
Query: 202 SIFLHTFAMDGTGFISLGFPAKVVIDLFAALDFHGGDLHLAAADGQVIIQTKLQNTEMVI 261
+FL+T +DG G +SLGFP K V D + +D H G L LA D +V+I+ L NT++++
Sbjct: 242 DLFLNTAKVDGRGAVSLGFPVKEVTDFLSVIDLHDGSLCLATEDNKVLIEG-LPNTQIMV 300
Query: 262 YNSTLLLQKLNDDDSPEGS-IANHSCVSDKGNPTKFNMKIMGKKYIFYCSTLQIAGVQSV 320
N ++ + + + D + S + N SC +D P + I K Y+ YCS L+I GV+SV
Sbjct: 301 SNDSISFKVVENQDGDQISHVGNVSCKADDRTPKASVLNISNKDYVVYCSQLEIMGVKSV 360
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQ 380
Y LA+ GL S V ++++ +L+L ++M + VI + +F+ L+ AA+REM+L A LIKQ
Sbjct: 361 YALAFPYRGLESRVHKSSRSALILHIVMVVIMVILVSMFMFLLVGAARREMYLRAKLIKQ 420
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
M+AT+QAERKSMNK+ A A ASHDVRASLA + GL+++ ++ PG+++ NL + C+
Sbjct: 421 MDATQQAERKSMNKSLAFASASHDVRASLAGLTGLIDISKDEVAPGSEIETNLIQMEGCT 480
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
KDLLGILNS+++ SKIEAGKM+L EEEFNL +LLE+VVD+Y+ VG+KKGVDVVLDP DGS
Sbjct: 481 KDLLGILNSILDTSKIEAGKMQLEEEEFNLEELLEDVVDLYHPVGMKKGVDVVLDPHDGS 540
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
V V+GDR+KLKQ+LCNL+SN++KFTSEGH+S+RA KK S + ++AS++ +
Sbjct: 541 VAKFSRVKGDRMKLKQVLCNLLSNAVKFTSEGHVSIRAWAKKPSSESSVLASSQKSMLNR 600
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
L F +N E F DL+A + V++NPN ++F FEVDDTGKG+PK+KQ S+FE +VQVKETA
Sbjct: 601 LWSFFCKNNEAFKDLEASNKVQKNPNCMEFVFEVDDTGKGVPKEKQKSVFENYVQVKETA 660
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
LG IVQS+V LM G+I I DKE G +G CFRFN+ LT EED
Sbjct: 661 LGTGGTGLGLG-IVQSLVRLMGGDIGIVDKEIGAKGTCFRFNIFLTTCDTVPSDHGKEED 719
Query: 681 PRTHNDWPQTGLHQ--------------HFASFWGSAAKSEGSQMILFIAGEERRRVLKR 726
+ +Q + + + ++EGS +I+ + +ERRR+ +R
Sbjct: 720 IEAQGHATSSYSYQPLDLRIQSTCNPGLNILTSPRPSPRAEGSHVIILMQSDERRRITQR 779
Query: 727 YIENSLNIKVTIVKQEKNLHQELRKVKRKMD---PSSIGYAEKPESSLVDSLTMSASSSS 783
E +L IKV+++K+ + L+K++RK+ SS G +E S S SS
Sbjct: 780 LFE-TLGIKVSVLKEWERFLYALKKIRRKVSLSHRSSSGISE-----FSPRSFRSGSFSS 833
Query: 784 DTGHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVP 843
+ G D+ L D D P +K ++ F L++I+ATAG EL + +A F++D+
Sbjct: 834 NAGPKDMPLSAMDGTDLTLPTPRKTYARGTPRFILILIEATAGPFPELCRAVAEFRKDLQ 893
Query: 844 SLSCKVVWIDNSVIRNAHSREY--RLLPICDHVISRPFHGSRLIEVLKLLPECKGASQRN 901
+ C+ VW+D +R+ + R+ ++ D V+ +PFHGSRL +V KLLPE G
Sbjct: 894 NTCCRAVWLDKPTLRSVNFRDVPEEMISPNDLVMLKPFHGSRLYQVAKLLPEFGG----- 948
Query: 902 FPKLKMEASSQ------ELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKC 955
P L + A SQ EL + P N+ + + + S +Q+V S+
Sbjct: 949 -PMLGISAISQVGKAGPELSLSSLPT-TNRTTPRKSRSXVRLVKE-SEIQEVGTSSN--- 1002
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
+ PL GK+ L+ ED ++ K+ +A + +LG E C NG +A + VC L + K +
Sbjct: 1003 -QNPLRGKRVLIAEDSMVLCKLATAHVTRLGGTVEACDNGAKAVELVCNGLRNNXKNNAS 1061
Query: 1016 --LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
LPYDYI+MDCEMP M+G+EAT+ IR+EE+QY VHIPIIALTAHA A + ++AGMD
Sbjct: 1062 IILPYDYILMDCEMPEMDGYEATKRIREEEQQYGVHIPIIALTAHANGEEAKRTIEAGMD 1121
Query: 1074 FHLTKPLQKDKLLDVVK 1090
+HL+KPL+++ L+ ++
Sbjct: 1122 YHLSKPLKRETLMGAIE 1138
>gi|224102477|ref|XP_002312692.1| predicted protein [Populus trichocarpa]
gi|222852512|gb|EEE90059.1| predicted protein [Populus trichocarpa]
Length = 1136
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/1151 (42%), Positives = 694/1151 (60%), Gaps = 86/1151 (7%)
Query: 9 RLCPKIVLRPLCFLIFLGFCAFGTLKI----WLMTIKTAHE-IKQEASGVLNNSFSEIET 63
+L I RP+ I L + W IK + + A V + SEIE
Sbjct: 2 KLSSLIASRPVLIFIILAIGVVLLPCVVVPWWYNMIKQMQKHMDFNAHVVQSGLVSEIEN 61
Query: 64 TARLLLPLNSSAFNLARSLSSYLNGTELSFDTIQTKVAPTLFLALSTIPHLSLVSYLGLD 123
A+LL P+NSSA NLAR +SS +NG+ LS ++ KVAP+LF A IP +S +S++GL
Sbjct: 62 IAKLLHPINSSAINLARVMSSSINGSILSSYDVENKVAPSLFQAFPVIPFISQISFIGLG 121
Query: 124 GLSFSYFNDGDQTLAVYSNSSFAAN-----WYTQPVNRDTGMLYGNAIASIPIVSANASW 178
GL FSY+ +G+Q A+YSNS+ A+N WY QPV+ DTG +YG+A+ ++P ++ NASW
Sbjct: 122 GLFFSYYYEGNQVFAMYSNST-ASNARNFSWYRQPVDSDTGKVYGDAVKTLPFITTNASW 180
Query: 179 FQEVINSTNGYSSLVTGLNKEEGSIFLHTFAMDGTGFISLGFPAKVVIDLFAALDFHGGD 238
++ +NS+ GY+S +G N + +FL+T ++ G +SLGF AK + F ++ +GG
Sbjct: 181 IEQALNSSQGYASFESGWNGAQDPLFLNTVSLHGQAVLSLGFSAKALTSFFNNVELYGGS 240
Query: 239 LHLAAADGQVIIQTKLQNTEMVIYNST--LLLQKLNDDDSPEGSIANHSCVSDKGNPTKF 296
L+LA G+V++ L NT++VI ++ L + KLN D + N SC+ + G
Sbjct: 241 LYLATQSGKVLV-GGLPNTQIVIKENSVSLYMTKLNGDQIDH--VGNVSCMPNNGKLQDS 297
Query: 297 NMKIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISL 356
+ + KY CS ++I GVQSVY LA+ NGL S V+R+ ++SL+L ++M A IS+
Sbjct: 298 VLYLEEAKYRVLCSQVEIVGVQSVYALAFPYNGLASSVNRSIEISLVLFIIMIAAIFISI 357
Query: 357 GLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLV 416
FI+L+ +AA RE+ LC+ALIKQM AT+QAERKSMNK+ A A ASHD+RA+LA I GL+
Sbjct: 358 VSFILLVVRAAGREIHLCSALIKQMEATQQAERKSMNKSLAFASASHDIRAALAGITGLI 417
Query: 417 ELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEE 476
E+C+ +A G++L NL + C+KDL+G+LNS+++ SKIEAGKM+L EEEF+LA+LLE+
Sbjct: 418 EICYAEARAGSELDTNLQQMDDCTKDLVGLLNSILDTSKIEAGKMQLEEEEFDLAKLLED 477
Query: 477 VVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISV 536
VD+Y+ VG+KKGVDVVLDP DGS+L V+GDRVKLKQ+LCNL+SN++KFT EGH+SV
Sbjct: 478 AVDLYHPVGMKKGVDVVLDPYDGSILKHSRVKGDRVKLKQVLCNLLSNAVKFTFEGHVSV 537
Query: 537 RAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDD 596
RA +K S + IIASN+N + +C LFF+NK+ FD+ V++ + ++F FEV+D
Sbjct: 538 RAWTQKPSLENKIIASNQNGLWRCFLCLFFKNKKEFDE------VKQKQSSIEFVFEVND 591
Query: 597 TGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERG 656
TGKGIP++KQ S+FE FVQVKETAL Q G GLGLGIVQS+V LM GEI I +KE G++G
Sbjct: 592 TGKGIPREKQKSVFENFVQVKETAL-GQGGTGLGLGIVQSLVRLMGGEIGIVNKENGKKG 650
Query: 657 VCFRFNVLLTAVCE---------------RERPDTDEEDPRTHNDWPQTGL----HQHFA 697
CF+FNV L +CE PD + P GL
Sbjct: 651 TCFKFNVFLD-ICEIPSAYIKNAEVEIEGDSMPDGELNYSVLPIQTPSPGLVIRTPSPRL 709
Query: 698 SFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMD 757
S GS+ K EGS ++L I EER R +YIE L IK + VKQ K+LH L+++K + +
Sbjct: 710 SILGSSPKIEGSHVVLLIQNEERLRSSHKYIE-GLGIKASSVKQWKHLHSTLKRIKVRQN 768
Query: 758 PSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDDYDNVSPHSKKASSKCLSSFT 817
S G + K + L + + DV L+ D D S+ ++ + S F
Sbjct: 769 VSPYGSSGKSD------LGSRSDHFNSRSMKDVPLNSMDGIDQKPSASRSSNLRGASGFV 822
Query: 818 LVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSR--EYRLLPICDHVI 875
L+VIDA AG EL +++A FKRD+PS KVVW+D R+ + R E+ L+ D ++
Sbjct: 823 LLVIDAGAGPFQELCRVVAEFKRDLPSSCYKVVWLDKPTSRSINLRGFEHDLINPRDDIL 882
Query: 876 SRPFHGSRLIEVLKLLPEC--------KGAS----------------QRNFPKLKMEASS 911
+PFHGSRL +V++LLPE G+S + +F ++ +A
Sbjct: 883 LKPFHGSRLYQVIRLLPEFGATNALKDPGSSSSTHSQGTKLKVPSTCENSFQQVDSQAEG 942
Query: 912 QELQHCTDPNPL------NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKF 965
NPL + +KS ++ SS Q A + K +K L+G K
Sbjct: 943 SSKNEKNRKNPLLDDPDHSHVKSKSRQSPTERLPVRSSEIQEARGNPSK--DKSLSGLKL 1000
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA--LPYDYIMM 1023
LVV+D+ I KVT +L GA EV NG+EAF V L + R+ + LPYDYI+M
Sbjct: 1001 LVVDDNEISRKVTRHILKGHGATVEVFENGEEAFQLVRIGLHNQREHSHSIVLPYDYILM 1060
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
DCEMP M+G EATR IRKEE+ Y VHIPI+A +A G K+ +AG D + K + +
Sbjct: 1061 DCEMPKMDGCEATRQIRKEEKFYGVHIPILAFSADNSGGQGKKMKEAGTDGRVNKKINME 1120
Query: 1084 KLLDVVKSIDE 1094
+L + +++I +
Sbjct: 1121 QLEETIRNIQQ 1131
>gi|255548469|ref|XP_002515291.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223545771|gb|EEF47275.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 1138
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/1094 (43%), Positives = 659/1094 (60%), Gaps = 81/1094 (7%)
Query: 59 SEIETTARLLLPLNSSAFNLARSLSSYLNGTELSFDTIQTKVAPTLFLALSTIPHLSLVS 118
SEIE TA+LL PLNSSA NLAR LSS LNG+ LS IQ KVAP LF S IPH+S +S
Sbjct: 57 SEIENTAKLLHPLNSSATNLARILSSSLNGSTLSQLAIQNKVAPMLFQTFSVIPHISQIS 116
Query: 119 YLGLDGLSFSYFNDGDQTLAVYSNSSFAAN------------WYTQPVNRDTGMLYGNAI 166
Y GL+G F+Y+ DG++T A+YSNSS A + WY Q + DTG LYGNA
Sbjct: 117 YFGLEGPFFAYYRDGNETYAIYSNSSIAPSNSSALSLQIKCTWYKQAADPDTGKLYGNAS 176
Query: 167 ASIPIVSANASWFQEVINSTNGYSSLVTGLNKEEGSIFLHTFAMDGTGFISLGFPAKVVI 226
S + ANASW QE ++S NG++S+ G + + IFL++ ++ G G ISLGFP VI
Sbjct: 177 ESQANILANASWIQEALSSGNGHASIGNGWSSAQDIIFLNSVSILGQGAISLGFPVNAVI 236
Query: 227 DLFAALDFHGGDLHLAAADGQVIIQTKLQNTEMVIYNSTLLLQKLNDDDSPEGSIANHSC 286
+ F A++F+GG L LA G V+ L NT++VI ++ +N D I SC
Sbjct: 237 NFFNAIEFYGGSLCLATVKGDVL-SNGLPNTQLVITGKSISFNLMNSDGDHIDHIGKVSC 295
Query: 287 VSDKGNPTKFNMKIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLV 346
+ +KG +KI KY+ YCS L+I GVQSVY LA+ +G+ S V R+ K++L+LL+
Sbjct: 296 MPNKGMLRPSLLKIGEAKYMAYCSQLEIMGVQSVYALAFPHHGVVSTVDRSTKVALILLL 355
Query: 347 LMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVR 406
+M +A IS+ F++L+ +AA RE+ L +ALI+QM AT+QAERKSMNK+ A A ASHD+R
Sbjct: 356 VMVVAVFISIFSFVVLMVRAATREIHLSSALIRQMEATQQAERKSMNKSLAFASASHDIR 415
Query: 407 ASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEE 466
A+LA I GL+E+ + + +P +L NL + C+KDL+G+LNS+++MSK+EAGKM++ E
Sbjct: 416 AALAGITGLIEISYGEVSP-YELQTNLHQMDDCAKDLVGLLNSILDMSKVEAGKMQVELE 474
Query: 467 EFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSM 526
EF+LA LLE+VVD+++ VG++KG+DV+LDPCDGSVL +V+GDR KLKQ+LCNL+ N++
Sbjct: 475 EFDLANLLEDVVDLFHPVGMQKGLDVILDPCDGSVLKFSNVKGDRGKLKQVLCNLLGNAV 534
Query: 527 KFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPN 586
KFTSEGH+SVRA +K S + IIAS++ + + S F +K+ D + + S+++NPN
Sbjct: 535 KFTSEGHVSVRAWARKPSLEDKIIASSQKGLWRHCSCWFMEHKD--HDAETMDSMKQNPN 592
Query: 587 LLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIA 646
++F FEVDDTG GIPK+ Q S+FE FVQ KETA Q G GLGLGIVQS+V LM GEI
Sbjct: 593 CMEFLFEVDDTGIGIPKEMQKSVFENFVQAKETAF-GQGGTGLGLGIVQSLVRLMGGEIG 651
Query: 647 IADKEPGERGVCFRFNVLLTAVCERERPDTD--EEDPRTHNDWPQTGLHQH--------- 695
I DKE E+G CF+FN L E P T D D HQ+
Sbjct: 652 IVDKENNEKGTCFKFNTFLIT---SEIPSTSYTRGDIEMGRDSISNKAHQYSELTVKAPT 708
Query: 696 -FASF--------WGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLH 746
F SF GS+ K +GS ++L I ++R+R+++++IE L I++++V + + L
Sbjct: 709 SFTSFAASPRLSILGSSLKIDGSHVVLLIQNKQRQRIVQKFIER-LGIRISVVSKWERLS 767
Query: 747 QELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDDYDNVSPHSK 806
L K++ K + S Y+ K + L SS DV L D + P S
Sbjct: 768 STLTKIRSKQNVSPYSYSGKSD------LGSRNEISSSRPKKDVPLSYLDGAEQ-KPLSH 820
Query: 807 KASSKCLS---SFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSR 863
++SS L SF L+VID + G +L + + F+R + S CKVVW+D +R H
Sbjct: 821 RSSSSILKGAPSFILLVIDTSTGPFEKLQQAITEFRRGLHSARCKVVWLDKPTLRRIHGG 880
Query: 864 EYRLLPICDHVIS-RPFHGSRLIEVLKLLPECKGASQRNF--PKLKMEASSQELQHCTDP 920
+ D IS +PFHGSRL V++ LPE G K K E++ + + DP
Sbjct: 881 IEDDIIDSDDEISLKPFHGSRLYHVIRFLPEFGGTLHHGVSSSKPKRESTIRARKAIKDP 940
Query: 921 NPLNKLK----------SFGAEAGASISSHCSSLQQVAAQSDG-------------KCSE 957
+ +K G++I H + Q A+ D + S+
Sbjct: 941 GSSSAIKLQRRQHSLQEGHMVVEGSTIREHHKTTGQYPARKDSIGSSEIHDRECGNQSSD 1000
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK--A 1015
KPL+G +FLV +DD V L KLGA ++C NG+EA + V L + K +
Sbjct: 1001 KPLSGVRFLVADDDQASRMVAKGNLSKLGASVKLCANGEEALELVRYGLQNQNKNRRYSV 1060
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075
PYDYI+MDCEMP+MNG+EATR IR EE YD+H+P+IALTA G K+ +AGMD H
Sbjct: 1061 APYDYILMDCEMPIMNGYEATRQIRLEERSYDIHMPVIALTADDDNG--EKMEEAGMDDH 1118
Query: 1076 LTKPLQKDKLLDVV 1089
L KPL +D+LL +
Sbjct: 1119 LHKPLNRDQLLKAI 1132
>gi|224104183|ref|XP_002333975.1| predicted protein [Populus trichocarpa]
gi|222839404|gb|EEE77741.1| predicted protein [Populus trichocarpa]
Length = 1119
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/1093 (41%), Positives = 655/1093 (59%), Gaps = 94/1093 (8%)
Query: 58 FSEIETTARLLLPLNSSAFNLARSLSSYLNGTELSFDTIQTKVAPTLFLALSTIPHLSLV 117
SEIE A+LL P+NSSA NLAR ++S +NG+ LS ++ KVAP+LF A S IP +S +
Sbjct: 56 LSEIENIAKLLHPINSSAINLARVMTSSINGSILSSYDVENKVAPSLFQAFSVIPFISQI 115
Query: 118 SYLGLDGLSFSYFNDGDQTLAVYSNSSFAAN-----WYTQPVNRDTGMLYGNAIASIPIV 172
SY+GL GL FSY+ +G+QT A+YSNS+ A+N WY QPV+ DTG +YG+A+ S+P +
Sbjct: 116 SYIGLGGLFFSYYYEGNQTFAMYSNST-ASNERNFSWYRQPVDSDTGTVYGDAVKSLPFI 174
Query: 173 SANASWFQEVINSTNGYSSLVTGLNKEEGSIFLHTFAMDGTGFISLGFPAKVVIDLFAAL 232
NASW ++ +NS+ GY+S +G N + +FL+T ++ G +SLGF AK + +
Sbjct: 175 KTNASWIEQALNSSQGYASFESGWNDAQDPLFLNTVSLLRQGVLSLGFSAKALTSFLNNV 234
Query: 233 DFHGGDLHLAAADGQVIIQTKLQNTEMVIYNST--LLLQKLNDDDSPEGSIANHSCVSDK 290
+ +GG L+LA G+V++ L NT+ VI ++ L + KLN D + N SC+ +
Sbjct: 235 ELYGGSLYLATQSGKVLV-GGLPNTQTVIKENSVSLYMTKLNGDQIDH--VGNVSCMPNN 291
Query: 291 GNPTKFNMKIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFI 350
G + + KY CS ++I GVQSVY L + NGL S V+R+ K+SL+L +++
Sbjct: 292 GKQEDSVLYLGEAKYRVSCSQVEIVGVQSVYALVFPYNGLASSVNRSIKISLILFIILIA 351
Query: 351 AGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLA 410
A IS+ F++L+ +AA+RE+ LC+ALIKQM AT+QAERKSMNK+ A A ASHD+RA+LA
Sbjct: 352 AIFISIVSFVLLVVRAARREIHLCSALIKQMEATQQAERKSMNKSLAFATASHDIRAALA 411
Query: 411 AIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNL 470
I GL+E+C+ + G++L NL + C+KDL+G+LNS+++ SKIEAGKM+L EEEF+L
Sbjct: 412 GITGLIEICYAEVRAGSELDTNLRQMDGCTKDLVGLLNSILDTSKIEAGKMQLEEEEFDL 471
Query: 471 AQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTS 530
A+LLE+ VD+Y+ VG+KKGVDVVLDP DGS+L V+GDR KLKQ+LCNL+SN++KFT
Sbjct: 472 AKLLEDAVDLYHPVGMKKGVDVVLDPYDGSILKHSRVKGDRGKLKQVLCNLLSNAVKFTF 531
Query: 531 EGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQF 590
EG +SVRA +K S + IIASN+N + +C S LFF+NK+ F+D V++ + ++F
Sbjct: 532 EGQVSVRAWTQKPSLENKIIASNQNGLWRCFSCLFFKNKKEFND------VKQKQSSMEF 585
Query: 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
FEV+DTGKGIPK+KQ S+FE FVQVKETALG IVQS+V LM GEI I +K
Sbjct: 586 VFEVNDTGKGIPKEKQKSVFENFVQVKETALGQGGTGLGLG-IVQSLVRLMGGEIGIVNK 644
Query: 651 EPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHND---------------WPQTGL--- 692
E GE+G CF+FNV L +CE D + D P GL
Sbjct: 645 ENGEKGTCFKFNVFLD-ICEIPSTDNKNAEVEIEGDSMPNGELNYSELTIRTPSPGLVIR 703
Query: 693 -HQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRK 751
S S+ K EGS ++L I EER R ++YIE L IKV+ VKQ ++LH L++
Sbjct: 704 TPSPRLSILSSSPKIEGSHVVLLIQNEERLRSSQKYIE-GLGIKVSSVKQWEHLHSTLKR 762
Query: 752 VKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDDYDNVSPHSKKASSK 811
+K + + S P SS S ++ S DV L D D S+ ++ +
Sbjct: 763 IKARQNVS-------PHSSSGKSDHFNSRS-----MKDVPLSSMDGIDQKLSASRNSNLR 810
Query: 812 CLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSR--EYRLLP 869
F L+VIDA AG EL +++A FKRD+ S CKVVW+D R+ + R E L+
Sbjct: 811 GAPGFVLLVIDAGAGPFQELCRVVAEFKRDLHSSCCKVVWLDKQTSRSMNLRGFEQDLID 870
Query: 870 ICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSF 929
D ++ +PFHGSRL +V++LLPE + P SQ+ + N +
Sbjct: 871 PRDDILLKPFHGSRLYQVIRLLPEFGATNVLKDPGSSSSTHSQKTKLKVPSTCENSFQQV 930
Query: 930 GAEAGASIS---------------------SHCSSLQQVAAQSD------GKCSE-KPLN 961
++A S S S ++++ +S G S+ K L+
Sbjct: 931 DSQAEGSSKNEKNRKNPLLDDPDHSHVRSKSRQSPIERLLVRSSEIQEVCGNLSKGKSLS 990
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G KFLV +D+ I +VT +L GA EVC NG+E+F V + + +++
Sbjct: 991 GLKFLVADDNEISRRVTRHILKGHGATVEVCENGEESFQLV-----------RIVYGNHV 1039
Query: 1022 MMDC--EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++ C +MP M+G EATR IRK+E+ Y VHIPI+A +A G K+ +AG D + K
Sbjct: 1040 LISCIQQMPKMDGCEATRQIRKKEKFYGVHIPILAFSADNSGGEGKKMKEAGTDGRVNKK 1099
Query: 1080 LQKDKLLDVVKSI 1092
+ ++L + ++ I
Sbjct: 1100 INTEQLEETIRDI 1112
>gi|356503926|ref|XP_003520750.1| PREDICTED: histidine kinase CKI1-like [Glycine max]
Length = 1056
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/1083 (41%), Positives = 642/1083 (59%), Gaps = 59/1083 (5%)
Query: 38 MTIKTAHEIKQEASGVLNNSFSEIETTARLLLPLNSSAFNLARSLSSYLNGTELSFDTIQ 97
M + H + + VL+ SEIE +A L+ P+NSS+ N A+ LSS L T LSF I+
Sbjct: 1 MVMHIEHHVILNSEYVLSQFQSEIEHSAGLIHPINSSSTNFAKLLSSTLQDTNLSFSDIK 60
Query: 98 TKVAPTLFLALSTIPHLSLVSYLGLDGLSFSYFNDGDQTLAVY----------SNSSFAA 147
TKVAP LF A T+P+L+ +SY+ GL FSY+ D Q LA+Y +S +
Sbjct: 61 TKVAPLLFKAFETVPNLAQISYIEKKGLFFSYYTDYGQVLAMYSNSSSLSTSFGGASNLS 120
Query: 148 NWYTQPVNRDTGMLYGNAIAS-IPIVSANASWFQEVINSTNGYSSLVTGLNKEEGSIFLH 206
+Y QPVNRDTG LYG AI S +P N SWF + +NS+ Y+SL T N + +F+
Sbjct: 121 IYYIQPVNRDTGELYGKAIISEVPSNIINTSWFVKAVNSSLSYASLGTKWNNDHDLLFVS 180
Query: 207 TFAMDGTGFISLGFPAKVVIDLFAALDFHGGDLHLAAADGQVIIQTKLQNTEMVIYNSTL 266
+ + GT ISLG P + D F + G +L L DG+++++ +QNT + N +
Sbjct: 181 SSRIKGTQVISLGIPVTTITDFFTPV---GANLSLVTKDGKMLVE-GIQNTRLGFSNDMV 236
Query: 267 LLQKLN---DDDSPEGSIANHSCVSDKGNPTKFNMKIMGKKYIFYCSTLQIAGVQSVYVL 323
Q +N D S +G + SC + I G +Y+ CST+ I ++SVYVL
Sbjct: 237 YFQSVNANGDQTSYDGVV---SCKDGDAEAASI-LNIQGVEYLIRCSTIDIMEIKSVYVL 292
Query: 324 AYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNA 383
A GL V K L LL M + +I++ F+ + ++ +REM LC +LIKQ A
Sbjct: 293 AVPRKGLDHFVLDIKKKGLALLTTMIVMILIAMVSFLYINVRSLRREMHLCWSLIKQNEA 352
Query: 384 TEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDL 443
T+QAERK MNK+ A A ASHDVRASLA + GL+E+ + +P ++L NL + +C+KDL
Sbjct: 353 TQQAERKCMNKSLAFASASHDVRASLAGLTGLIEMSFHEVSPDSELGTNLRQMDSCTKDL 412
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLG 503
LG+LNS+++ SK+EAGKM L EEEF++ QLLE+VVD+Y+ V +KKGVD+VLDPC+GSVL
Sbjct: 413 LGLLNSILDASKVEAGKMLLEEEEFDVFQLLEDVVDLYHSVAMKKGVDIVLDPCNGSVLR 472
Query: 504 SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSK 563
+GDR KLKQ+LCNL+SN++KFT EGHI+VRA +K S + +IA+++ S+ LS+
Sbjct: 473 YSRTKGDRGKLKQVLCNLLSNAVKFTEEGHIAVRAWAQKPSLQSSMIATHQYGSSRLLSR 532
Query: 564 LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH 623
L R E DD++ L+ ++++PN + F EVDDTGKGIPK+K S+FE +VQVKET LG
Sbjct: 533 LCCRQNEARDDVEDLN-IQQDPNCMDFTIEVDDTGKGIPKEKHKSVFENYVQVKETTLG- 590
Query: 624 QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRT 683
QEG GLGLGIVQS+V LM G+I I DK+ GE+G CFRFNVLLTA + DT ++ +
Sbjct: 591 QEGTGLGLGIVQSLVRLMHGDIEIMDKDIGEKGTCFRFNVLLTAHETQMNDDTRDDQAGS 650
Query: 684 HNDWPQTGLHQHFA-SFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQE 742
N GL S W + +SE S+++L I EERR +R++E L IKV +VK+
Sbjct: 651 GNKNQSHGLTMSPKLSIWTRSPRSEASRVVLLIQNEERRGTTQRFMER-LGIKVKVVKEW 709
Query: 743 KNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDDYDNVS 802
+ LH L+K+ ++ + + S S S S+ + + V L +D + +S
Sbjct: 710 RQLHYTLKKIIKQ---------KGLHPNSSSSPESSDSPSASSCTNGVPLSAQDGTNYIS 760
Query: 803 PHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHS 862
K+ + S F L+VIDA AG SEL K++A FKR + C+VVW++N +I + +
Sbjct: 761 SIFKRTDIEASSGFVLIVIDANAGPFSELCKVVAEFKRGL-CYPCRVVWLENPLIPSVDN 819
Query: 863 R--EYRLLPICDHVISRPFHGSRLIEVLKLLPECKGA---SQRNFPKLKMEAS------- 910
+ + D V+S+P HG RL +V+++LPE G S K K + S
Sbjct: 820 KILNKDVSNSNDIVLSKPLHGHRLFQVIRILPEYGGVWPCSSSETKKEKGQVSLTDEGAI 879
Query: 911 -SQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVE 969
ELQ C + +S+ H +Q+ S+ EKPL G K LVVE
Sbjct: 880 RRVELQECGSSSVTQ--QSYDRSRARKSHIHQGEIQECEELSN----EKPLWGMKCLVVE 933
Query: 970 DDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV 1029
D ++ ++T + L +LGA C NG++A V + L + P D+I+MDC+MPV
Sbjct: 934 DVVLLRRITKSTLDRLGASVMECENGEQA---VQTVEEGLTRNSSNRPCDFILMDCQMPV 990
Query: 1030 MNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
M+G+EATR IR+ E+ + VHIPI ALTA+ A ++AGMD HL KP+ K+ LL +
Sbjct: 991 MDGYEATRRIREIEKSHGVHIPIFALTANT-GKEAILSIEAGMDDHLIKPINKEALLKAI 1049
Query: 1090 KSI 1092
K I
Sbjct: 1050 KRI 1052
>gi|449454135|ref|XP_004144811.1| PREDICTED: histidine kinase CKI1-like [Cucumis sativus]
Length = 1038
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/1040 (42%), Positives = 627/1040 (60%), Gaps = 74/1040 (7%)
Query: 122 LDGLSFSYFNDGDQTLAVYSNSSFAA----------NWYTQPVNRDTGMLYGNAIASIPI 171
+DGL FSY+ D +QT AVY+NS+F A +W TQ N TG LYGN +P+
Sbjct: 1 MDGLFFSYYTDKNQTFAVYANSTFTAKFYPHPRREYSWLTQLANSTTGELYGNMTEILPL 60
Query: 172 VSANASWFQEVINSTNGYSSLVTGLNKEEGSIFLHTFAMDGT-GFISLGFPAKVVIDLF- 229
V++N SWF++ +NS G +S+ T + +FL+T ++G+ G +S GF K IDLF
Sbjct: 61 VTSNTSWFRDALNSNQGCASIGTKWSSNHERLFLNTVRVNGSKGVVSFGFSFKTFIDLFF 120
Query: 230 AALDFHGGDLHLAAADGQVIIQTKLQNTEMVIYNSTLLLQKLNDDDSPEGSIANHSCVSD 289
+++ GG L+LA+ +G++++ Q+ +MV+ N + Q LN + + N SC +
Sbjct: 121 TSIERQGGRLYLASNEGEILVLGS-QDIKMVLVNGSATFQFLNPNGGEIARLGNISCQAR 179
Query: 290 KGN--PTKFNMKIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVL 347
K + P ++G Y YC ++I GVQ VY L L SL+ +++++ L+LL+L
Sbjct: 180 KEDFDPKDSFFNLLGTNYNIYCYPVEILGVQLVYSLVLPQKELASLIFKSSRMGLILLIL 239
Query: 348 MFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRA 407
+ +I++ +F+ ++ + KREM LCA LI+QM AT+QAERKSMNK+ A +ASHD+RA
Sbjct: 240 IMAITIITVFIFVFIVIRGTKREMHLCAKLIQQMEATQQAERKSMNKSVAFTRASHDIRA 299
Query: 408 SLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEE 467
SLA IIGL+E+CH ++ PG++L +L + C+KDLLGILNS+++ SKIEAGK++L EEE
Sbjct: 300 SLAGIIGLIEICHNESTPGSELDISLKQMDGCTKDLLGILNSILDTSKIEAGKIQLEEEE 359
Query: 468 FNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMK 527
F+L QLLE+VVD+Y+ VG+KKG+D+VLDP DGS++ V+GDR KLKQ+LCNL+SN++K
Sbjct: 360 FHLGQLLEDVVDLYHPVGVKKGIDLVLDPYDGSIIKFSQVKGDRGKLKQVLCNLLSNAVK 419
Query: 528 FTSEGHISVRAAVKK-KSFKQDIIASNRN-VISKCLSKLFFRNKEGFDDLDAL-HSVERN 584
FTSEG ++VRA VK + + ++I+SN N I K S L N F + A+ + V N
Sbjct: 420 FTSEGQVTVRAWVKNLPTMQNNMISSNHNDEILKYFSFLVC-NTSTFQEQQAMDNGVNLN 478
Query: 585 PNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGE 644
P ++F FE+DDTGKGIPK+K+ +FE +VQVKETA Q G GLGLGIVQS+V LM G+
Sbjct: 479 PGCMEFTFEIDDTGKGIPKEKRKLVFENYVQVKETAF-GQGGTGLGLGIVQSLVRLMGGD 537
Query: 645 IAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHND---W-PQTGLHQHFASFW 700
IAI DKE GE+G CFRF+VLL + + D P + W P T LH A
Sbjct: 538 IAILDKEIGEKGTCFRFSVLLLVLEDNVNTGDDTRQPSPTSKLTFWAPTTSLHSPRA-IR 596
Query: 701 GSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPS- 759
+++K+E S++IL I ++RR + K+++E SL +KV +KQ + L L+K+ K S
Sbjct: 597 TTSSKTETSRVILLIQNDQRRLICKKFLE-SLGVKVLAMKQWEQLLTTLQKILDKQSHSM 655
Query: 760 SIGYAEKPESSLVDSLTMSASSSSDTG--HHDVALDIKDDYDNVSPHSKKASSKCLSSFT 817
SS D L+ S S S G H + KD+ + KK + + +SF
Sbjct: 656 HNSRGRSGTSSPSDCLSKSTSGDSRNGLNMHISSGARKDETNYFLSVFKKTNLRGGNSFI 715
Query: 818 LVVIDATAGSVSELVKILANFKRDVPSLSCKVVWI---DNSVIRNAHSREYRLLPICDHV 874
L+VIDA AG E+ ++ANF+R + CKVVW+ S I N + + D
Sbjct: 716 LIVIDARAGPFKEICNMVANFRRRLQGSHCKVVWLLENQMSRISNDKGIDSNIYKSNDVF 775
Query: 875 ISRPFHGSRLIEVLKLLPE-----------------------------CKGASQR-NFPK 904
ISRPFHGSRL EV++LLPE C+ S+ N P
Sbjct: 776 ISRPFHGSRLYEVIRLLPEFGGTLETGESSTSYWSGNVSKDLSSSPYQCQSKSKEGNSPI 835
Query: 905 LKMEASSQELQHCTDPN-------PLNKLKS-FGAEAGASISSHCSSLQQVAAQSDGKCS 956
+ ++ + T N N++ S G++ +S SL Q + K S
Sbjct: 836 FRGHIETRVQKETTSSNGTSPKNLSTNQIHSCIGSKTRSSPIVEQKSLHQEIREEKYKHS 895
Query: 957 --EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK 1014
EKPL+GKK LV ED+ ++ K+ L +LGA E+C NGKEA + VC L + RK G
Sbjct: 896 SGEKPLSGKKVLVAEDNLVLQKLARLNLERLGATTEICENGKEALELVCNGLGNQRKHGA 955
Query: 1015 A--LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGM 1072
+ LPYDYI+MDCEMP+M+G+EATR IRK E Y+ HIPIIALTAH A K ++AGM
Sbjct: 956 SNTLPYDYILMDCEMPIMDGYEATREIRKVERYYNTHIPIIALTAHTTGEEAGKTIEAGM 1015
Query: 1073 DFHLTKPLQKDKLLDVVKSI 1092
D HL KPL+K+KLL+ + I
Sbjct: 1016 DVHLGKPLRKEKLLEAITCI 1035
>gi|449490917|ref|XP_004158748.1| PREDICTED: LOW QUALITY PROTEIN: histidine kinase CKI1-like [Cucumis
sativus]
Length = 1001
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/980 (42%), Positives = 593/980 (60%), Gaps = 64/980 (6%)
Query: 169 IPIVSANASWFQEVINSTNGYSSLVTGLNKEEGSIFLHTFAMDGT-GFISLGFPAKVVID 227
+P+V++N SWF++ +NS G +S+ T + +FL+T ++G+ G +S GF K ID
Sbjct: 5 LPLVTSNTSWFRDALNSNQGCASIGTKWSSNHERLFLNTVRVNGSKGVVSFGFSFKTFID 64
Query: 228 LF-AALDFHGGDLHLAAADGQVIIQTKLQNTEMVIYNSTLLLQKLNDDDSPEGSIANHSC 286
LF +++ GG L+LA+ +G++++ Q+ +MV+ N + Q LN + + N SC
Sbjct: 65 LFFTSIERQGGRLYLASNEGEILVLGS-QDIKMVLVNGSATFQFLNPNGGEIARLGNISC 123
Query: 287 VSDKGN--PTKFNMKIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLML 344
+ K + P ++G Y YC ++I GVQ VY L L SL+ +++++ L+L
Sbjct: 124 QARKEDFDPKDSFFNLLGTNYNIYCYPVEILGVQLVYSLVLPQKELASLIFKSSRMGLIL 183
Query: 345 LVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHD 404
L+L+ +I++ +F+ ++ + KREM LCA LI+QM AT+QAERKSMNK+ A +ASHD
Sbjct: 184 LILIMAITIITVFIFVFIVIRGTKREMHLCAKLIQQMEATQQAERKSMNKSVAFTRASHD 243
Query: 405 VRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELV 464
+RASLA IIGL+E+CH ++ PG++L +L + C+KDLLGILNS+++ SKIEAGK++L
Sbjct: 244 IRASLAGIIGLIEICHNESTPGSELDISLKQMDGCTKDLLGILNSILDTSKIEAGKIQLE 303
Query: 465 EEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSN 524
EEEF+L QLLE+VVD+Y+ VG+KKG+D+VLDP DGS++ V+GDR KLKQ+LCNL+SN
Sbjct: 304 EEEFHLGQLLEDVVDLYHPVGVKKGIDLVLDPYDGSIIKFSQVKGDRGKLKQVLCNLLSN 363
Query: 525 SMKFTSEGHISVRAAVKK-KSFKQDIIASNRN-VISKCLSKLFFRNKEGFDDLDAL-HSV 581
++KFTSEG ++VRA VK + + ++I+SN N I K S L N F + A+ + V
Sbjct: 364 AVKFTSEGQVTVRAWVKNLPTMQNNMISSNHNDEILKYFSFLVC-NTSTFQEQQAMDNGV 422
Query: 582 ERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLM 641
NP ++F FE+DDTGKGIPK+K+ +FE +VQVKETA Q G GLGLGIVQS+V LM
Sbjct: 423 NLNPGCMEFTFEIDDTGKGIPKEKRKLVFENYVQVKETAF-GQGGTGLGLGIVQSLVRLM 481
Query: 642 KGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHND---W-PQTGLHQHFA 697
G+IAI DKE GE+G CFRF+VLL + + D P + W P T LH A
Sbjct: 482 GGDIAILDKEIGEKGTCFRFSVLLLVLEDNVNTGDDTRQPSPTSKLTFWAPTTSLHSPRA 541
Query: 698 SFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMD 757
+++K+E S++IL I ++RR + K+++E SL +KV +KQ + L L+K+ K
Sbjct: 542 -IRTTSSKTETSRVILLIQNDQRRLICKKFLE-SLGVKVLAMKQWEQLLTTLQKILDKQS 599
Query: 758 PS-SIGYAEKPESSLVDSLTMSASSSSDTG--HHDVALDIKDDYDNVSPHSKKASSKCLS 814
S SS D L+ S S S G H + KD+ + KK + + +
Sbjct: 600 HSMHNSRGRSGTSSPSDCLSKSTSGDSRNGLNMHISSGARKDETNYFLSVFKKTNLRGGN 659
Query: 815 SFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWI---DNSVIRNAHSREYRLLPIC 871
SF L+VIDA AG E+ ++ANF+R + CKVVW+ S I N + +
Sbjct: 660 SFILIVIDARAGPFKEICNMVANFRRRLQGSHCKVVWLLENQMSRISNDKGIDSNIYKSN 719
Query: 872 DHVISRPFHGSRLIEVLKLLPE-----------------------------CKGASQR-N 901
D ISRPFHGSRL EV++LLPE C+ S+ N
Sbjct: 720 DVFISRPFHGSRLYEVIRLLPEFGGTLETGESSTSYWSGNVSKDLSSSPYQCQSKSKEGN 779
Query: 902 FPKLKMEASSQELQHCTDPN-------PLNKLKS-FGAEAGASISSHCSSLQQVAAQSDG 953
P + ++ + T N N++ S G++ +S SL Q +
Sbjct: 780 SPIFRGHIETRVQKETTSSNGTSPKNLSTNQIHSCIGSKTRSSPIVEQKSLHQEIREEKY 839
Query: 954 KCS--EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRK 1011
K S EKPL+GKK LV ED+ ++ K+ L +LGA E+C NGKEA + VC L ++
Sbjct: 840 KHSSGEKPLSGKKVLVAEDNLVLQKLARLNLERLGATTEICENGKEALELVCNGLXQSKE 899
Query: 1012 EGKA--LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVD 1069
G + LPYDYI+MDCEMP+M+G+EATR IRK E Y+ HIPIIALTAH A K ++
Sbjct: 900 HGASNTLPYDYILMDCEMPIMDGYEATREIRKVERYYNTHIPIIALTAHTTGEEAGKTIE 959
Query: 1070 AGMDFHLTKPLQKDKLLDVV 1089
AGMD HL KPL+K+KLL+ +
Sbjct: 960 AGMDVHLGKPLRKEKLLEAI 979
>gi|15226594|ref|NP_182265.1| histidine kinase CKI1 [Arabidopsis thaliana]
gi|75097398|sp|O22267.1|CKI1_ARATH RecName: Full=Histidine kinase CKI1; AltName: Full=Protein
CYTOKININ-INDEPENDENT 1
gi|1679803|dbj|BAA13416.1| histidine kinase homolog [Arabidopsis thaliana]
gi|2529684|gb|AAC62867.1| putative histidine kinase [Arabidopsis thaliana]
gi|330255746|gb|AEC10840.1| histidine kinase CKI1 [Arabidopsis thaliana]
Length = 1122
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/1151 (37%), Positives = 633/1151 (54%), Gaps = 114/1151 (9%)
Query: 12 PKIVLRPLCFLIFLGFCAFGTLKIWLMTIKTAHE--IKQEASGV--LNNSF-SEIETTAR 66
P +V L FL+ + C IW+ +T E +K+ AS L S SEIE +
Sbjct: 13 PIVVFCVLAFLVVVFEC------IWISNWRTTTENLVKEVASFTEDLRTSLVSEIENIGK 66
Query: 67 LLLP-LNSSAFNLARSLSSYLNGTELSFDTIQTKVAPTLFLALSTIPHLSLVSYLGLDGL 125
N S LAR + SY+ + F IQT++AP LF+A STI +S VSY+ DGL
Sbjct: 67 FTYAKTNLSTIGLARVIDSYITNNDTGFTEIQTQIAPLLFVAYSTILQVSQVSYISRDGL 126
Query: 126 SFSYFNDGDQTLAVYSNSSFAAN-----WYTQPVNRDTGMLYGNAIASIPIVSANASWFQ 180
FSY + + ++AV++NSS ++ WYTQ V++ TG L GN+ S + + WFQ
Sbjct: 127 MFSYIAESNTSVAVFANSSSNSSRGDYTWYTQTVDQLTGRLNGNSTKSQSLDVTHTDWFQ 186
Query: 181 EVINSTNGYSSLVTG--LNKEEGSIFLHTFA--MDGTGFISLGFPAKVVIDLFAALDFHG 236
+N Y++ G L E+ + + G +SLGFP K + ++ +L+ HG
Sbjct: 187 AA--QSNNYTTAFVGTSLGGEDNETLIQSVVSLYSKKGLVSLGFPVKTLTEVLNSLNLHG 244
Query: 237 GDLHLAAADGQVIIQTKLQNTEMVIYNSTLLLQKLNDDDSPEGSIANHSCVSDKGNPTKF 296
+L++ DG V+++ N I N ++ + E + C+ + + + +
Sbjct: 245 EELYMWTKDGTVLVREGSLNDSFFISNGSICFGR-------ESNSLWSQCIPENCSSSGY 297
Query: 297 NMKIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRN-NKLSLMLLVLMFIAGVIS 355
++I +Y +CS ++++GV Y L + + G + + K L+V+M G
Sbjct: 298 EVEIKRLRYQAFCSVIEVSGVPLRYTLMFPNKGGATRIKHQAEKAKYQLIVVMIFLGFGW 357
Query: 356 LGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGL 415
F+ + +A +REM + A LI QM AT+QAERKSMNK+ A A ASHD+R +LA + GL
Sbjct: 358 PVWFVWFMMQATRREMHMRATLINQMEATQQAERKSMNKSQAFANASHDIRGALAGMKGL 417
Query: 416 VELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLE 475
+++C + PG+D+ L + C+KDL+ +LNSV++MSKIE+GKM+LVEE+FNL++LLE
Sbjct: 418 IDICRDGVKPGSDVDTTLNQVNVCAKDLVALLNSVLDMSKIESGKMQLVEEDFNLSKLLE 477
Query: 476 EVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHIS 535
+V+D Y+ V +KKGVDVVLDP DGSV +VRGD +LKQIL NLVSN++KFT +GHI+
Sbjct: 478 DVIDFYHPVAMKKGVDVVLDPHDGSVFKFSNVRGDSGRLKQILNNLVSNAVKFTVDGHIA 537
Query: 536 VRA-AVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD--DLDALHSVERNPNLLQFEF 592
VRA A + S ++AS +SK + +F +NKE + + +S+ N N ++F F
Sbjct: 538 VRAWAQRPGSNSSVVLASYPKGVSKFVKSMFCKNKEESSTYETEISNSIRNNANTMEFVF 597
Query: 593 EVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEP 652
EVDDTGKGIP + + S+FE +VQV+ETA GHQ G GLGLGIVQS+V LM GEI I DK
Sbjct: 598 EVDDTGKGIPMEMRKSVFENYVQVRETAQGHQ-GTGLGLGIVQSLVRLMGGEIRITDKAM 656
Query: 653 GERGVCFRFNVLLTAVCERERPDTDEEDPRTH----NDW---PQTG-------------- 691
GE+G CF+FNVLLT + E P + R D+ P G
Sbjct: 657 GEKGTCFQFNVLLTTL---ESPPVSDMKVRQEIEAGGDYVSTPNLGLTINTSLGGSMNIR 713
Query: 692 -LHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELR 750
L F + S+ K EGS+++L + EERRRV ++YI+N L IKVT+V++ ++L L
Sbjct: 714 NLSPRFNNCLSSSPKQEGSRVVLLLKNEERRRVTEKYIKN-LGIKVTVVEKWEHLSYALE 772
Query: 751 KVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDDYDNVSPHSKKASS 810
++ SS+G AE ++S SS + + +D D + K S
Sbjct: 773 RLFGFSPQSSMGRAE---------CSLSCPSSRELPF--IGMDGIDSRSQLP----KRRS 817
Query: 811 KCLSSFTLVVIDATAGSVSELVKILANFKRDVP-SLSCKVVWIDNSVIRNAHSREYRLLP 869
S+ L+VIDA G EL I+ F+R +P +SCKVVW++ S R +
Sbjct: 818 ISFSAVVLLVIDAKTGPFFELCDIVKQFRRGLPHGISCKVVWLNESSTRVSER------- 870
Query: 870 ICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSF 929
D SRP HGSRL+EVLK+LPE G + P S + +P +K++
Sbjct: 871 -GDISCSRPLHGSRLMEVLKMLPEFGGTVLKEPPTELQRESLLRHSFVAERSPKHKVQEE 929
Query: 930 G------------------AEAGASISSHCSSLQQVAAQSDGKCSEKP-----LNGKKFL 966
G +E+ + S + + + D + + KP L GK+ L
Sbjct: 930 GPSSMFNKKLGKRIMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVL 989
Query: 967 VVEDDAIVLKVTSAVLGKLG-AKFEVCRNGKEAFDHVCKILSDLRKEGKA--LPYDYIMM 1023
VV+D+ I KV + L K+G ++ E C +GKEA V + L+ ++G LP+DYI M
Sbjct: 990 VVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFM 1049
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAG-VASKIVDAGMDFHLTKPLQK 1082
DC+MP M+G+EATR IRK E+ Y V PIIA++ H A + + AGMD L K L
Sbjct: 1050 DCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSL-- 1107
Query: 1083 DKLLDVVKSID 1093
++L +V++ I+
Sbjct: 1108 NQLANVIREIE 1118
>gi|297828473|ref|XP_002882119.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
gi|297327958|gb|EFH58378.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1125
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 424/1146 (36%), Positives = 631/1146 (55%), Gaps = 104/1146 (9%)
Query: 12 PKIVLRPLCFLIFLGFCAFGTLKIWLMTI-KTAHEIKQEASGVLNNSFSEIETTARLLLP 70
P +V L FL+ + C T+ W T A ++ + + SEIE + P
Sbjct: 13 PIVVFCVLAFLVVVFGCI--TISEWRTTTDNVAKDVASFTKDLRTSIVSEIENIGKFTYP 70
Query: 71 -LNSSAFNLARSLSSYLNGTELSFDTIQTKVAPTLFLALSTIPHLSLVSYLGLDGLSFSY 129
N S LAR + SYL ++ F IQT++AP LF A STIP +S VSY+ DGL FSY
Sbjct: 71 KTNLSTIGLARVIDSYLTNNDIGFAEIQTQIAPLLFEAYSTIPQVSQVSYISRDGLFFSY 130
Query: 130 FNDGDQTLAVYSNSSFAA-----NWYTQPVNRDTGMLYGNAIASIPIVSANASWFQEVIN 184
+ + ++AV++NSS + WYTQ +++ TG L GNA S P+ + WFQ +
Sbjct: 131 IAESNTSVAVFANSSSNSSGGDYTWYTQNIDQLTGRLNGNATKSQPLDLTHTDWFQAAQS 190
Query: 185 STNGYSSLVTGLNKEEGSIFLHTFA--MDGTGFISLGFPAKVVIDLFAALDFHGGDLHLA 242
+ + L T L +++ + + + G +SLGFP K + D+ +L+ HG +L++
Sbjct: 191 NNYTTTFLGTSLGEKDNETLIQSVVSLYNKKGLVSLGFPVKTLTDVLNSLNLHGEELYMW 250
Query: 243 AADGQVIIQTKLQNTEMVIYNSTLLLQKLNDDDSPEGSIANHSCVSDKGNPTKFNMKIMG 302
DG V+++ N I N ++ + + C+S+ + + ++I
Sbjct: 251 TKDGTVLVREGSLNASFFISNGSICFGR-------DSKSVWSQCISENCSTIGYKVEIKR 303
Query: 303 KKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRN-NKLSLMLLVLMFIAGVISLGLFII 361
Y +CS L+++GV Y L + + G + + +K L+V++ G+ F+
Sbjct: 304 STYQAFCSVLEVSGVPLRYTLMFPNEGGATRIKHQADKAMYQLIVVVIFLGLGWPVWFVW 363
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
+ +A +REM + A LI QM AT+QAERKSMNK+ A A ASHD+R +LAA+ GL+++C +
Sbjct: 364 FMMQATRREMRMRAMLINQMEATQQAERKSMNKSQAFANASHDIRGALAAMKGLIDICRD 423
Query: 422 DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481
+ PG+D+ L + CSKDL+ +LNSV++MSKIE+GKM+LVEE+FNL++LLE+V D Y
Sbjct: 424 EVKPGSDIDTTLKQVNACSKDLVVLLNSVLDMSKIESGKMQLVEEDFNLSKLLEDVTDFY 483
Query: 482 YHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541
+ V +KKGVDVVLD DGS+ +VRGD KLKQIL NLVSN++KFT +GHI +RA +
Sbjct: 484 HPVAMKKGVDVVLDSHDGSIFKFSNVRGDSGKLKQILNNLVSNAVKFTVDGHILIRAWAQ 543
Query: 542 KKSFKQDII-ASNRNVISKCLSKLFFRNKEGFDDLDA--LHSVERNPNLLQFEFEVDDTG 598
+ K +I AS+ +SK L + +NK+ + +A +S+ N N ++F FEVDDTG
Sbjct: 544 RPGSKSSVILASDPQGVSKFLKSMLCKNKDQSSNYEAEISNSIRNNANTMEFVFEVDDTG 603
Query: 599 KGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVC 658
KGIP + + S+FE +VQV+ETA Q+G GLGLGIVQS+V LM GEI I DK GE+G C
Sbjct: 604 KGIPMEMRKSVFENYVQVRETAQ-GQQGTGLGLGIVQSLVRLMGGEIRITDKAMGEKGTC 662
Query: 659 FRFNVLLTAVCERERPDTDE----EDPRTHNDW---PQTG---------------LHQHF 696
F+FNVLLT + E P + D + D+ P G L F
Sbjct: 663 FQFNVLLTTL---ESPPVSDMKVRPDIQAGGDYISTPDLGLTINTSLGGSMNIRNLSPRF 719
Query: 697 ASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKM 756
+ S+ K E S+++L + EERRRV ++YI+N L IKVT+V++ ++L L ++
Sbjct: 720 NNCLSSSPKQECSRVVLLLKNEERRRVTEKYIKN-LGIKVTMVEKWEHLSYALERLFGFS 778
Query: 757 DPSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDDYDNVSPHSKKASSKCLSSF 816
SS+G AE SS S ++ L D D+ S K+ S+ S+
Sbjct: 779 PQSSMGRAE--------------SSLSCPSSRELPLIGMDGIDSRSQLPKRRSTS-FSAV 823
Query: 817 TLVVIDATAGSVSELVKILANFKRDVP-SLSCKVVWIDNSVIRNAHSREYRLLPICDHVI 875
L+VIDA G + EL I+ F++ +P ++CKVVW++ S R + D
Sbjct: 824 VLLVIDAKTGPLLELYDIVKQFRKGLPHGITCKVVWLNESSTRVSER--------GDISC 875
Query: 876 SRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFG----- 930
SRP HGSRL+EVLK+LPE G + P S + +P +K + G
Sbjct: 876 SRPLHGSRLMEVLKMLPEFGGTVLKETPTELQRESLLRHSFVAERSPKHKFQEEGPCSMF 935
Query: 931 -------------AEAGASISSHCSSLQQVAAQSDGKCSEKP-----LNGKKFLVVEDDA 972
+E+ I S S + + D + + KP L GK+ LVV+D+
Sbjct: 936 NKKLGKTIMAPTASESETRIKSVSSGRKPIGNAEDEEGTSKPSDDEFLRGKRVLVVDDNF 995
Query: 973 IVLKVTSAVLGKLGAKFEV--CRNGKEAFDHVCKILSDLRKEGKA--LPYDYIMMDCEMP 1028
+ KV + L K+G EV C +GKEA V + L+ ++ LP+DYI MDC+MP
Sbjct: 996 LTRKVATGKLKKMGVS-EVLQCDSGKEALRLVTEGLTQKEEQCSVNKLPFDYIFMDCQMP 1054
Query: 1029 VMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGV-ASKIVDAGMDFHLTKPLQKDKLLD 1087
M+G+EATR IRK E+ Y V IP+IA++ H A + V AGMD L K L ++L +
Sbjct: 1055 EMDGYEATREIRKVEKSYGVRIPVIAVSGHDPGSREARETVQAGMDAFLDKSL--NQLAN 1112
Query: 1088 VVKSID 1093
V++ I+
Sbjct: 1113 VIREIE 1118
>gi|297813131|ref|XP_002874449.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
gi|297320286|gb|EFH50708.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1113
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 421/1159 (36%), Positives = 638/1159 (55%), Gaps = 127/1159 (10%)
Query: 4 KLDPKRLCPKIVLRPLCFLIFLGFCAFGTLKIWLMTIKT-AHEIKQEASGVLNNSFSEIE 62
KL RL +V L F++ + C + + W T K+ A ++ + + SEI+
Sbjct: 6 KLVASRLI--VVFGILAFMVVVFGCIW--ISNWRTTTKSVAKDVASFTEDLRTSLVSEIQ 61
Query: 63 TTARL-LLPLNSSAFNLARSLSSYLNGTELSFDTIQTKVAPTLFLALSTIPHLSLVSYLG 121
+ L N S LAR + SYL + F IQT++AP LF A STIP +S VSY+
Sbjct: 62 NIGKFTYLKTNLSTIGLARMVDSYLTNNDTGFTEIQTQIAPLLFEAYSTIPQVSQVSYIS 121
Query: 122 LDGLSFSYFNDGDQTLAVYSNSSFAAN-----WYTQPVNRDTGMLYGNAIASIPIVSANA 176
DGL FSY + + ++AV++NSS ++ WYTQ V++ TG L GNA S + +
Sbjct: 122 RDGLLFSYIAESNTSVAVFANSSSTSSGGDYTWYTQTVDQLTGRLNGNATKSKALDLTHT 181
Query: 177 SWFQEVINSTNGYSS--LVTGLNKEEGSIFLHTFA--MDGTGFISLGFPAKVVIDLFAAL 232
W Q +N Y++ L T L E+ + + G +SLGFP K + D+ L
Sbjct: 182 YWIQAA--QSNNYTTAFLGTSLGGEDSETLIQSVVSLYSKKGLVSLGFPVKTLTDVLNRL 239
Query: 233 DFHGGDLHLAAADGQVIIQTKLQNTEMVIYNSTLLLQKLNDDDSPEGSIANHSCVSDKGN 292
+ HG +L++ DG V+++ N I N ++ + E C+ D +
Sbjct: 240 NLHGEELYMWTKDGTVLVREGSLNASFFISNGSICFGR-------ESKSVWSQCIPDNCS 292
Query: 293 PTKFNMKIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAG 352
+ + ++I + +CS L+++GV Y L + + G + + + ++ L+++ I
Sbjct: 293 SSGYEVEIKRSTFQAFCSVLEVSGVPLRYTLMFPNKGGATRIRHQAEKAMYQLIVVTI-- 350
Query: 353 VISLGL---FIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASL 409
+ LG F+ + +A ++EM + A LI QM AT+QAERKSMNK+ A A ASHD+R +L
Sbjct: 351 FLGLGWPLWFVWFMMQATRKEMHMRATLINQMEATQQAERKSMNKSQAFANASHDIRGAL 410
Query: 410 AAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFN 469
A I GL+++C ++ PG+++ L + CSKDL+ +LNSV++MSKIE+GKM+LVEE+FN
Sbjct: 411 AGIKGLIDICCDEVKPGSNVDTTLKQVNVCSKDLVVLLNSVLDMSKIESGKMQLVEEDFN 470
Query: 470 LAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT 529
LA+LLE+V+D Y+ V +KKGVDVV DP DGS+ +VRGD KLKQIL NLVSNS+KFT
Sbjct: 471 LAKLLEDVIDFYHPVAMKKGVDVVFDPHDGSIFKFTNVRGDSCKLKQILNNLVSNSVKFT 530
Query: 530 SEGHISVRAAVKKKSFKQDII-ASNRNVISKCLSKLFFRNKEGFD--DLDALHSVERNPN 586
++GHIS+RA ++ K ++ AS+ +SK L +F +NK+ +++ +S+ N N
Sbjct: 531 TDGHISIRAWAQRPGSKSSVVLASDIQGVSKILKSMFCKNKDQSSTYEIEISNSIRNNAN 590
Query: 587 LLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIA 646
++F FE DDTGKGIP + + S+FE ++QV+ T GHQ G GLGLGIVQS+V LM GEI
Sbjct: 591 TMEFVFEADDTGKGIPIEMRKSVFENYIQVRGT--GHQ-GTGLGLGIVQSLVRLMGGEIR 647
Query: 647 IADKEPGERGVCFRFNVLLTAVCERERPDTD----EEDPRTHNDW---PQTG-------- 691
I DK GE+G CF FNVLLT + E P + ++D D+ P G
Sbjct: 648 ITDKAMGEKGTCFEFNVLLTTL---ESPPMNNMKVKQDIEAGGDYVSTPNLGLTINTSLG 704
Query: 692 -------LHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKN 744
L F + S+ K E S+++L + EERRRV ++YI+N + IKV++V++ ++
Sbjct: 705 GSMNLRNLSPKFNNCLSSSPKQEWSRVVLLLKSEERRRVTEKYIKN-VGIKVSVVEKWEH 763
Query: 745 LHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDDYDNVSPH 804
L L ++ SS+G AE ++S SSS + L D D+ S
Sbjct: 764 LSYALERLFGFSPQSSMGRAE---------CSLSCSSS-----RKLPLIGMDGIDSRSQL 809
Query: 805 SKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSRE 864
K+ + + L+VIDA G EL + F +VW++ S + H E
Sbjct: 810 PKRRRN-SFPALVLLVIDAKTGPFFELYDTVKQF----------LVWLNES---STHVSE 855
Query: 865 YRLLPICDHVISRPFHGSRLIEVLKLLPECKGASQRNFP-KLKMEA-------SSQELQH 916
D SRP HGSRL+EVLK+LPE G R P +L+ E+ + + L+H
Sbjct: 856 R-----GDISCSRPLHGSRLMEVLKMLPEFGGTLLRETPTELQRESPLRYSFVAERSLKH 910
Query: 917 CTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQ------------SDGKCSEKP----- 959
L+ L+ F + G ++ + SS + + + D + + KP
Sbjct: 911 KFQEEGLSSLR-FNKKLGKTLMAPTSSESETSVKLLRIGGNPIGNLEDEQGTSKPSDDEF 969
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLG-AKFEVCRNGKEAFDHVCKILSDLRKEGKA--- 1015
L K+ LVV+D+ + KV L K+G ++ + C NGKEA V + L+ R+E +
Sbjct: 970 LREKRVLVVDDNFLTRKVAIGKLKKMGVSEVKQCDNGKEALRLVTEGLTQRREEQGSVDN 1029
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGV-ASKIVDAGMDF 1074
LP+DYI MDC+MP M+G+EATR IRK E+ Y VHIP+IA++ H A + + AGMD
Sbjct: 1030 LPFDYIFMDCQMPDMDGYEATREIRKVEKSYGVHIPVIAVSGHDPGSREARETIQAGMDA 1089
Query: 1075 HLTKPLQKDKLLDVVKSID 1093
L K L ++L +V++ I+
Sbjct: 1090 FLDKNL--NQLANVIRDIE 1106
>gi|297819670|ref|XP_002877718.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
gi|297323556|gb|EFH53977.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1063
Score = 600 bits (1546), Expect = e-168, Method: Compositional matrix adjust.
Identities = 386/1046 (36%), Positives = 586/1046 (56%), Gaps = 98/1046 (9%)
Query: 93 FDTIQTKVAPTLFLALSTIPHLSLVSYLGLDGLSFSYFNDGDQTLAVYSNSSFAAN---- 148
F IQTK+AP LF A STIP +S VSY+ GL FSY + + ++AV++NSS ++
Sbjct: 64 FSEIQTKIAPLLFEAYSTIPQVSQVSYISRAGLLFSYIAESNTSVAVFANSSSTSSGGDY 123
Query: 149 -WYTQPVNRDTGMLYGNAIASIPIVSANASWFQEVINSTNGYSS--LVTGLNKEEGSIFL 205
WYTQ V++ TG L GNA S P+ + WFQ + ++ Y++ L T L E+ +
Sbjct: 124 TWYTQTVDQLTGRLNGNATKSQPLDLTHTDWFQ--VAQSDNYTTAFLGTSLGGEDNETLI 181
Query: 206 HTFA--MDGTGFISLGFPAKVVIDLFAALDFHGGDLHLAAADGQVIIQTKLQNTEMVIYN 263
+ + G +SLGFP K + D+ +L+ HG +L++ D ++++ N + N
Sbjct: 182 QSVVSLYNNKGLVSLGFPVKTLTDVLNSLNLHGEELYMWTKDETMLVRQGSLNASFFVSN 241
Query: 264 STLLLQKLNDDDSPEGSIANHSCVSDKGNPTKFNMKIMGKKYIFYCSTLQIAGVQSVYVL 323
++ S E C+ + + + ++I K+ +CS L+++GV Y L
Sbjct: 242 GSICF-------SRESKSIGSQCIPYNCSSSGYEVEIKRSKFQAFCSVLEVSGVSLRYTL 294
Query: 324 AY-DSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMN 382
+ + +G + + K L+V+ G+ F+ + +A +REM + A LI QM
Sbjct: 295 MFPNKSGATRIRDQAEKAMYQLIVVTIFFGLGWPLWFVWFMMQATRREMHMRAVLINQME 354
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
AT+QAERKSMNK+ A A ASHD+R +LA I GL+++C ++ PG+D+ L + CSKD
Sbjct: 355 ATQQAERKSMNKSQAFANASHDIRGALAGIKGLIDICRDEVKPGSDVDTTLRQVNVCSKD 414
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
L+ +LNSV++MSKIE+GKM LVEE+FNLA+LLE+++D Y+ V +KKGVDVVLD +GS+
Sbjct: 415 LVVLLNSVLDMSKIESGKMHLVEEDFNLAKLLEDIIDFYHPVAMKKGVDVVLDLHNGSIF 474
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDII-ASNRNVISKCL 561
+VRGD KLKQIL NL+SN++KFT +GHIS+RA ++ S K ++ AS+ +SK L
Sbjct: 475 KFSNVRGDSGKLKQILNNLISNAVKFTVDGHISIRAWAQRPSSKSSVVLASDPQGVSKIL 534
Query: 562 SKLFFRNKEGFD--DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
+F +NK+ + + +S+ N N ++F FEVDDTG+GIP + + S+FE VQV+ET
Sbjct: 535 KSMFCKNKDQSSTCETEISNSIRNNANTMEFVFEVDDTGRGIPMEMRKSVFENNVQVRET 594
Query: 620 ALGHQEGLGLGLGIVQ-SMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTD- 677
+G GLGLGIVQ S+V LM GEI I DK GE+G CF+FNVLLT + D
Sbjct: 595 ---RHQGTGLGLGIVQSSLVRLMGGEIRITDKAMGEKGTCFQFNVLLTTLDSPPVSDMKA 651
Query: 678 EEDPRTHNDW---PQTG---------------LHQHFASFWGSAAKSEGSQMILFIAGEE 719
++D ++ P G L F + S+ K E S+++L + EE
Sbjct: 652 KQDIEVGGEYVSTPNLGLTINTSLGAIMNIRNLSPRFNNCLSSSPKQECSRVVLLLKNEE 711
Query: 720 RRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSA 779
RRRV ++YI+N L IKV++V++ ++L L ++ SS+G AE
Sbjct: 712 RRRVTEKYIKN-LGIKVSVVEKWEHLSYALERLFGFSPQSSMGRAE-------------- 756
Query: 780 SSSSDTGHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFK 839
S S+ ++ L D D+ S KK S+ S+ L+VIDA G EL I+ F+
Sbjct: 757 CSLSNPSSRELPLIGMDGIDSRSQLPKKRSN-SFSALVLLVIDAKTGPFFELYDIVKQFR 815
Query: 840 RDVP-SLSCKVVWIDNSVIRNAHSREYRLLPICDHVISRPFHGSRLIEVLKLLPECKGAS 898
R +P ++CKVVW++ S R + D SRP HGS L+EVLK+LPE G
Sbjct: 816 RGLPHGITCKVVWLNESSTRVSEK--------GDISCSRPLHGSHLMEVLKMLPEFGGTF 867
Query: 899 QRNFP-KLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSE 957
+ P +L+ E+ L+H K S +E+ + S + + D + +
Sbjct: 868 LKETPTELQRESL---LRHSFVAERSPKQNSRSSESETWVKSVRTGGNLIGNPEDEQGTS 924
Query: 958 KP-----LNGKKFLVVEDDAIVLKVTSAVLGKLG-AKFEVCRNGKEAFDHVCKILSDLRK 1011
KP L GK+ LVV+D+ ++ KV + L K+G ++ + C +GKEA V + L+ R+
Sbjct: 925 KPSDDEFLRGKRVLVVDDNFLIRKVATGKLKKMGVSEVKQCDSGKEALRLVTEGLAQRRE 984
Query: 1012 EGKA---LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGV-ASKI 1067
E + LP+DYI MDC+ IRK E+ Y V IP+IA++ H A +
Sbjct: 985 EQGSIYNLPFDYIFMDCQ------------IRKVEKSYGVRIPVIAVSGHDHGSREARET 1032
Query: 1068 VDAGMDFHLTKPLQKDKLLDVVKSID 1093
+ AGMD L K L ++L +V++ I+
Sbjct: 1033 IQAGMDAFLDKNL--NQLPNVIRDIE 1056
>gi|255576481|ref|XP_002529132.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223531411|gb|EEF33245.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 671
Score = 557 bits (1435), Expect = e-155, Method: Compositional matrix adjust.
Identities = 322/670 (48%), Positives = 439/670 (65%), Gaps = 21/670 (3%)
Query: 9 RLCPKIVLRPLC--FLIFLGFCAFGTLKI-WLMTI--KTAHEIKQEASGVLNNSFSEIET 63
+L +V RPL FL+ +G ++ + W I + +E+ A + SEIE
Sbjct: 2 KLISLVVSRPLFIFFLLSIGVLLLPSVVVPWWYKIIQQMKNEVDLNARMFGSGMLSEIEN 61
Query: 64 TARLLLPLNSSAFNLARSLSSYLNGTELSFDTIQTKVAPTLFLALSTIPHLSLVSYLGLD 123
TA+LL P+NS+A NL R LSS LNG LS I++KVAP LF S P +S +SY GL+
Sbjct: 62 TAKLLHPINSTATNLVRILSSSLNGNNLSQFEIESKVAPMLFQTFSVTPLISQISYFGLE 121
Query: 124 GLSFSYFNDGDQTLAVYSNSS------------FAANWYTQPVNRDTGMLYGNAIASIPI 171
G F+Y+ DG++T A+YSNSS WY Q V+ DTG LYGNA S
Sbjct: 122 GPFFAYYRDGNKTYALYSNSSAYSSSSSALKLPIKYTWYKQAVDPDTGKLYGNANESQVS 181
Query: 172 VSANASWFQEVINSTNGYSSLVTGLNKEEGSIFLHTFAMDGTGFISLGFPAKVVIDLFAA 231
ANASW QE + S NGY+S+ G N + +FL++ M G G ISL FP +I+ F A
Sbjct: 182 FLANASWIQEALASGNGYASIGNGWNSAQDLMFLNSVTMLGQGVISLWFPVNALINFFNA 241
Query: 232 LDFHGGDLHLAAADGQVIIQTKLQNTEMVIYNSTLLLQKLNDDDSPEGSIANHSCVSDKG 291
+D +GG L+LA G V+ L NT+MV+ ++ +N + + + SC+ D G
Sbjct: 242 IDLYGGCLYLATLSGNVL-ANGLPNTQMVVTGKSVSFSLMNLNGDQIEHLGSFSCMPDNG 300
Query: 292 NPTKFNMKIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIA 351
+KI +Y+ YCS L+I GVQSVY LA+ + L S V R+ K++L+LL++M A
Sbjct: 301 MLRPSILKIGDTEYMAYCSQLEIVGVQSVYALAFPYHKLVSSVDRSTKVALILLMVMIAA 360
Query: 352 GVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAA 411
S+ F++L+ +AA RE+ LC+ALIKQM AT+QAERKSMNK+ A A A+HD+RA+LA
Sbjct: 361 VFFSILSFVLLMVRAATREIHLCSALIKQMEATQQAERKSMNKSLAFASATHDIRAALAG 420
Query: 412 IIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLA 471
I GL+E+ + + +P L NL + C KDL+G+LNSV++ SKIEAGKM++ EEF+LA
Sbjct: 421 ITGLIEISYGEVSP-YQLQTNLQQMDDCVKDLVGLLNSVLDTSKIEAGKMQVELEEFDLA 479
Query: 472 QLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE 531
LLE+VVD+++ VG+KKG+D++LDPCDGS+L +V+GDR KLKQ+LCNL+ N++KFTSE
Sbjct: 480 NLLEDVVDLFHAVGMKKGLDIILDPCDGSILKFSNVKGDRGKLKQVLCNLLGNAVKFTSE 539
Query: 532 GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFE 591
GH+SVR +K S + IIASN + K S F +KE D++ ++S+++NPN ++F
Sbjct: 540 GHVSVRVWAQKASMENMIIASNPKELWKLCSCWFMNHKED-HDVEIMNSMKQNPNCIEFM 598
Query: 592 FEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651
FEVDDTG GIPK+KQ S+FE FVQVKETA Q G GLGLGIVQS+V LM GEI I DKE
Sbjct: 599 FEVDDTGIGIPKEKQKSVFENFVQVKETAF-GQGGTGLGLGIVQSLVRLMGGEIGIVDKE 657
Query: 652 PGERGVCFRF 661
E+G CFRF
Sbjct: 658 LSEKGTCFRF 667
>gi|297743973|emb|CBI36943.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 316/660 (47%), Positives = 434/660 (65%), Gaps = 53/660 (8%)
Query: 33 LKIWLMTIK-TAHEIKQEASGVLNNSFSEIETTARLLLPLNSSAFNLARSLSSYLNGTEL 91
+ +W TIK H+ K + + SEI++TA L+ P+N+SA NLAR L++ ++G +L
Sbjct: 14 IPLWYDTIKKIEHDAKLSSQKLHTELLSEIKSTAELVHPMNASAMNLARVLNASVSGMKL 73
Query: 92 SFDTIQTKVAPTLFLALSTIPHLSLVSYLGLDGLSFSYFNDGDQTLAVYSNS-------- 143
F I+ +VAP LF ALS PH+S +SY+G+DGL FSY+ G + A+YSNS
Sbjct: 74 PFSEIKNRVAPMLFQALSITPHVSQISYIGIDGLLFSYYAHGSEIFALYSNSSISVNSSS 133
Query: 144 --SFAANWYTQPVNRDTGMLYGNAIASIPIVSANASWFQEVINSTNGYSSLVTGLNKEEG 201
+ A WY Q + DTG LYG I S P+V NASWF+E +NSTNGYSSL T N +
Sbjct: 134 PNATAYTWYIQRADSDTGKLYGKVITSPPLVVVNASWFEEAMNSTNGYSSLGTEWNSVQ- 192
Query: 202 SIFLHTFAMDGTGFISLGFPAKVVIDLFAALDFHGGDLHLAAADGQVIIQTKLQNTEMVI 261
+FL+T +DG G +SLGFP K V D + +D H G L LA D +V+I+ L NT++++
Sbjct: 193 DLFLNTAKVDGRGAVSLGFPVKEVTDFLSVIDLHDGSLCLATEDNKVLIE-GLPNTQIMV 251
Query: 262 YNSTLLLQKLNDDDSPEGS-IANHSCVSDKGNPTKFNMKIMGKKYIFYCSTLQIAGVQSV 320
N ++ + + + D + S + N SC +D P + I K Y+ YCS L+I GV+SV
Sbjct: 252 SNDSISFKVVENQDGDQISHVGNVSCKADDRTPKASVLNISNKDYVVYCSQLEIMGVKSV 311
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQ 380
Y LA+ GL S V ++++ +L+L ++M + VI + +F+ L+ AA+REM+L A LIKQ
Sbjct: 312 YALAFPYRGLESRVHKSSRSALILHIVMVVIMVILVSMFMFLLVGAARREMYLRAKLIKQ 371
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
M+AT+QAERKSMNK+ A A ASHDVRASLA + GL+++ ++ PG+++ NL + C+
Sbjct: 372 MDATQQAERKSMNKSLAFASASHDVRASLAGLTGLIDISKDEVAPGSEIETNLIQMEGCT 431
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
KDLLGILNS+++ SKIEAGKM+L EEEFNL +LLE+VVD+Y+ VG+KKGVDVVLDP DGS
Sbjct: 432 KDLLGILNSILDTSKIEAGKMQLEEEEFNLEELLEDVVDLYHPVGMKKGVDVVLDPHDGS 491
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
V V+GDR+KLKQ+LCNL+SN++KFTSEGH+S+RA KK
Sbjct: 492 VAKFSRVKGDRMKLKQVLCNLLSNAVKFTSEGHVSIRAWAKK------------------ 533
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+++NPN ++F FEVDDTGKG+PK+KQ S+FE +VQVKETA
Sbjct: 534 -------------------PIQKNPNCMEFVFEVDDTGKGVPKEKQKSVFENYVQVKETA 574
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
L G GLGLGIVQS+V LM G+I I DKE G +G CFRFN+ LT C+ D +E+
Sbjct: 575 L-GTGGTGLGLGIVQSLVRLMGGDIGIVDKEIGAKGTCFRFNIFLT-TCDTVPSDHGKEE 632
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 154/277 (55%), Gaps = 39/277 (14%)
Query: 816 FTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLPICDHVI 875
F L++I+ATAG EL + +A F++D+ + C+ VW+D +R+ + R+ + + +I
Sbjct: 646 FILILIEATAGPFPELCRAVAEFRKDLQNTCCRAVWLDKPTLRSVNFRD-----VPEEMI 700
Query: 876 SRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGA 935
S + L+ K PE +S + S ++ +P
Sbjct: 701 S----PNDLVG--KAGPEPSLSSLPTTNRTTPRKSRSRVRLVKEPE-------------- 740
Query: 936 SISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNG 995
+Q+V S+ + PL GK+ L+ ED ++ K+ +A + +LG E C NG
Sbjct: 741 --------IQEVGTSSN----QNPLRGKRVLIAEDSMVLCKLATAHVTRLGGTVEACDNG 788
Query: 996 KEAFDHVCKILSDLRKEGKA--LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPII 1053
+A + VC L + K + LPYDYI+MDCEMP M+G+EAT+ IR+EE+QY VHIPII
Sbjct: 789 AKAVELVCNGLRNNTKNNASIILPYDYILMDCEMPEMDGYEATKRIREEEQQYGVHIPII 848
Query: 1054 ALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
ALTAHA A + ++AGMD+HL+KPL+++ L+ ++
Sbjct: 849 ALTAHANGEEAKRTIEAGMDYHLSKPLKRETLMGAIE 885
>gi|357442269|ref|XP_003591412.1| Signal transduction histidine-protein kinase barA [Medicago
truncatula]
gi|355480460|gb|AES61663.1| Signal transduction histidine-protein kinase barA [Medicago
truncatula]
Length = 646
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 281/652 (43%), Positives = 409/652 (62%), Gaps = 35/652 (5%)
Query: 15 VLRPLCFLIFLGFCAFGTLK-----IWLMTIKTAHEIKQEASGVLNNSFSEIETTARLLL 69
+LRP F+I L + A L +LM + ++ +++ SEIE +A LL
Sbjct: 3 LLRPSSFMILLAYGALIVLASLTPCWYLMVTHIEKSVNLHSANIVSQLQSEIEYSAELLH 62
Query: 70 PLNSSAFNLARSLSSYLNGTELSFDTIQTKVAPTLFLALSTIPHLSLVSYLGLDGLSFSY 129
P+ SS+ NL+ LSS LN T ++F + TKVAP LF AL TIPHL+ +SY+G++GL F++
Sbjct: 63 PMKSSSTNLSTLLSSTLNSTNITFSDVHTKVAPLLFQALKTIPHLTQISYIGMEGLFFTH 122
Query: 130 FNDGDQTLAVYSNSSFAAN-----WYTQPVNRDTGMLYGNAIASIPIVSANASWFQEVIN 184
+NDGDQ LA+YSNSS +Y Q VN DTGM++G AI S ++ +ASW IN
Sbjct: 123 YNDGDQVLAMYSNSSSGGASNKTLYYIQHVNHDTGMVFGEAIISNNTINIDASW----IN 178
Query: 185 STNG-----YSSLVTGLNKEEGSIFLHTFAMDGTGFISLGFPAKVVIDLFAAL-DFHGGD 238
TN ++SL T LN +F+++ ++ G ISLGF KV+ D + D G
Sbjct: 179 GTNNNISHEFASLGTKLNNVSDLLFMNSARINKIGGISLGFSTKVITDYITRIVDRQGTK 238
Query: 239 LHLAAADGQVIIQTKLQNTEMVIYNSTLLLQKLNDDDSPEGSIANHSCVSDKGNPTKFNM 298
+LA DG+VI++ +QN ++I+N ++ +Q +N + I N VS K ++
Sbjct: 239 SYLATKDGKVIVK-GIQNIRLMIFNDSVSIQAVNGNGDL---IRNEGAVSCKDQAVGSSL 294
Query: 299 KIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGL 358
I Y+ +C + I G++SV+VLA NG + L LL++M + I++
Sbjct: 295 NIHDTPYLIHCYPIDIMGIESVHVLAVPQNGSLIFNPSHKGKGLTLLIVMMVMIFIAILS 354
Query: 359 FIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVEL 418
F+ L KREM LCA+L++Q ATEQAERK+ NK+ A A ASHD+RA LA +IGL+E+
Sbjct: 355 FLFLNLGVTKREMHLCASLMQQKEATEQAERKNTNKSLAFATASHDLRAYLAGLIGLIEM 414
Query: 419 CHE----------DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEF 468
+ + P ++L NL + C++DLLG+LNS+++ SKIEAGKM+L EEEF
Sbjct: 415 SSKLVVTNSKLETNLKPSSELETNLKQMDNCAQDLLGLLNSILDTSKIEAGKMQLEEEEF 474
Query: 469 NLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKF 528
+L+ LLE+VVD+Y+ + +KKGV+VVLD C+GSV+ V+GDR KLKQ+LCNL+SN++KF
Sbjct: 475 DLSNLLEDVVDLYHPMAMKKGVEVVLDSCNGSVIKHSRVKGDRRKLKQVLCNLLSNAVKF 534
Query: 529 TSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLL 588
T EGHI+VRA +K + +N + K LS LF + + +D++A++ +++P L+
Sbjct: 535 TDEGHITVRAWTQKAKLQNSKTKTNHKSVMKHLSWLFNKKDKECEDIEAVNLAQQDPCLM 594
Query: 589 QFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHL 640
F FEVDDTGKGIPK+ S+FE +VQVKE ++G Q G GLGLGIVQS+V L
Sbjct: 595 DFVFEVDDTGKGIPKENHKSVFENYVQVKENSVG-QVGTGLGLGIVQSLVLL 645
>gi|242094944|ref|XP_002437962.1| hypothetical protein SORBIDRAFT_10g005590 [Sorghum bicolor]
gi|241916185|gb|EER89329.1| hypothetical protein SORBIDRAFT_10g005590 [Sorghum bicolor]
Length = 1035
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 354/1075 (32%), Positives = 539/1075 (50%), Gaps = 109/1075 (10%)
Query: 68 LLPLNSSAFNLARSLSSYLNGTELSFDTIQTKVAPTLFLALSTIPHLSLVSYL--GLDGL 125
LL N SA +A + E S +I ++V P +F+A + P L+ VSY G DG
Sbjct: 15 LLEANRSAVAIADAAREPATNDEPSPASI-SQVRPKMFMAFAMQPLLAQVSYYAGGADGH 73
Query: 126 SFSYF-NDGDQTLAVYSNSSFAANWYTQPVNRDTGMLYGNAIASIPIVSANASWFQEVIN 184
+F+++ + + A++++S W TQ V+ TG L G+A A+ A +F
Sbjct: 74 AFAFYRTECGEARALFTDSQ--KRWCTQAVDPATGRLVGSAAAA-----ATDGFFVPNST 126
Query: 185 STNGYSSLVTGLNKEE---GSIFLHTFAMDGTGFISLGFPAKVVI-------------DL 228
+T + V G N + +A G + P D+
Sbjct: 127 TTPAAAPPVEGKNNASPPPAASLWEGWARPGVRMLFFSAPVGGGDAGVGVVSAAVSVHDV 186
Query: 229 FAALDFHGG-----DLHLAAADGQVIIQTKLQNTEMVIYNSTLL-LQKLNDDDSPEGSI- 281
F A G D++ A D + T + IY LL Q DD+ E ++
Sbjct: 187 FEAAGNRIGVQDGLDVYYAVGDDKDDDVT----SASAIYEPLLLGYQHRTADDTAEDALT 242
Query: 282 -ANHSCVS---DKGNPTKFNMKIMGKKYIFY---CSTLQIAGVQSVYVLAYDSNGLGSLV 334
+ C + D P + G K+ Y C+ L ++GVQ L G ++
Sbjct: 243 FSELKCAASAIDDAAPELGQVVSGGPKHNRYKAACAMLDVSGVQVALRLVLRPPVQGHML 302
Query: 335 SRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNK 394
++L + + V+S + + +A+ REM L A L++Q A QAERKSMNK
Sbjct: 303 QALCVAVIVLACALLVLAVVSCAFAVRALRRASAREMALNADLVRQKEALRQAERKSMNK 362
Query: 395 TFALAKASHDVRASLAAIIGLVELCHEDAN--PGTDLAENLGLIRTCSKDLLGILNSVME 452
+ A A ASHD+R++LAAI GLV++ +A P + ENL + C+ L ILNS+++
Sbjct: 363 SNAFASASHDIRSALAAIAGLVDMSRPEAQSLPAPGIVENLDQMGVCTNKLFDILNSILD 422
Query: 453 MSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRV 512
SK+E+GKM+L E EF+++ +L+E VDM G+++GV+V+ DPCD SVL V GD
Sbjct: 423 TSKVESGKMQLEEAEFSMSDVLQESVDMANVTGVRRGVEVIWDPCDFSVLRCAAVLGDSK 482
Query: 513 KLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDI-----IASNRNVISKCLSKLFFR 567
+LKQIL NL+ N++KFT EGH+ +R + + A R L++LF
Sbjct: 483 RLKQILDNLLGNALKFTHEGHVLLRGWATRPIAGSGVGTPSRFAHPRRSAGGSLARLFRG 542
Query: 568 NKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGL 627
E D D V+ +PNL++F FEV DTG GIPK+K+ S+FE +VQV G
Sbjct: 543 RAE---DPDGQDHVQNDPNLVEFYFEVVDTGIGIPKEKRMSVFENYVQVNNGQGGTGL-- 597
Query: 628 GLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTD-EEDPRTHND 686
GLGIVQS V LM GEI I DKEPGERG CF FNVLL + E ++ D EE P
Sbjct: 598 --GLGIVQSFVRLMGGEICIKDKEPGERGTCFAFNVLLK-MSEVQQTHQDIEEGPSV--- 651
Query: 687 WPQTGLH--QHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKN 744
P L+ + AS + A+ +G +L++ G E RR+L+ ++E S+ +KV +V+Q +
Sbjct: 652 -PLGTLNGSNYRASAFQEASSFKGVHCVLYVHGSETRRILQTWME-SMGVKVWLVRQAEF 709
Query: 745 LHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDDYDNVSPH 804
+ L KV+ SS+ A++++D G D K+ + + +
Sbjct: 710 ISATLEKVQS----SSV-----------------ATAAADCGGGDRCFSSKEMVNQLRNN 748
Query: 805 S--KKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHS 862
+ K+AS + S L+VID + G++ E+ + +A R CKVV +++ S
Sbjct: 749 TGPKRASLGGIPSGILLVIDVSGGALEEIYQDMAKLARTKQQAPCKVVLLEDI---KTPS 805
Query: 863 REYRLLPI--CDHVISRPFHGSRLIEVLKLLPECKGA-SQRNFPKLKMEASSQELQHCTD 919
E R L C V+ +P HGSRL +L L + + + + ++ E + Q
Sbjct: 806 NELRRLKEQGCYLVLRKPVHGSRLFTLLMTLRDLQASDAHAQSSQVGPEIAGNNSQQQGL 865
Query: 920 PNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTS 979
P+ + EA AS + C L Q D +KPL G + L+ ED ++ +
Sbjct: 866 PDVVVPCVQ---EAAASAEAPC--LVQKQKPED----DKPLAGMQILLAEDTFVLQTIQR 916
Query: 980 AVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK---ALPYDYIMMDCEMPVMNGWEAT 1036
+L +LGA V +G A + + + L G+ LPY I MDC+MP M+G+EAT
Sbjct: 917 KILNQLGATVTVAVDGSVAVNLLKQALEQANVSGEEIVPLPYHVIFMDCQMPNMDGYEAT 976
Query: 1037 RLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKS 1091
+LIR+EE++Y +H PIIALTAH K +DAGMD HLTKP+ K+++ V++
Sbjct: 977 KLIREEEQRYGIHTPIIALTAHDTQEDLQKAIDAGMDLHLTKPILGKKIVEAVRT 1031
>gi|413942530|gb|AFW75179.1| hypothetical protein ZEAMMB73_171957 [Zea mays]
Length = 1059
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 355/1114 (31%), Positives = 548/1114 (49%), Gaps = 118/1114 (10%)
Query: 19 LCFLIFLGFCAFGTLKIWLM-------TIKTAHEIKQEASGVLNNSFSEIETTARLLLPL 71
LC + L T+ +M T +T ++ E+ G+ + + + LL
Sbjct: 19 LCMFLPLAVAGVVTVPSLVMLLLSLRETARTKDDVNVESMGL---ALRHVAGNLQPLLEA 75
Query: 72 NSSAFNLARSLSSYLNGTELSFDTIQTKVAPTLFLALSTIPHLSLVSYLGLDGLSFSYF- 130
N SA +A ++ + + E S +I ++V P +F+A + P L+ VSY G DG +F+++
Sbjct: 76 NRSAAAIADAMRNPASSNESSPASI-SQVRPKMFMAFAMQPLLAQVSYAGADGHAFAFYR 134
Query: 131 NDGDQTLAVYSNSSFAANWYTQPVNRDTGMLYGNAIASIP-----IVSANASWFQEVINS 185
+ + A++++S W TQ V+ TG L G+A + + S NAS
Sbjct: 135 TEHGEARALFTDSQ--KRWCTQAVDPATGRLVGSAAVAASKDAALVASKNAS-------- 184
Query: 186 TNGYSSLVTGLNKEE-GSIFLHTFAMDGTGFISLGFPAKVVIDLFAALDFHGGDLHLAAA 244
+SL G + + +F D G +S V + AA L++ A
Sbjct: 185 ---PASLRAGWARPDVRMLFFSAPVGDAAGVVSAAIAVHDVFEAAAARIGVQDGLNVYYA 241
Query: 245 DGQVIIQTKLQNTEMVIYNSTLLLQKLNDDDSPEG--SIANHSCVS---DKGNPTKFNMK 299
G + N + + +L Q +D+ E S + +C + D P +
Sbjct: 242 VGDKVASAATTNYKPL----SLGYQYGTAEDTAEEKLSFSRLTCAASAIDDATPELGQLV 297
Query: 300 IMGKKYIFY---CSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISL 356
G KY Y C+T ++GVQ L + G ++ + L ++ +A +S
Sbjct: 298 PGGPKYRRYKAACTTFDVSGVQVALRLVLRPSIQGHMLQALCVSVVFLACVLVLAAAVSC 357
Query: 357 GLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLV 416
L + + AA REM L L +Q A QAE KS A A ASHD+R++L+AI GLV
Sbjct: 358 ALAVRALRWAAAREMALNVDLARQKEALRQAEFKSN----AFASASHDIRSALSAIAGLV 413
Query: 417 ELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEE 476
++ + + ENL + C+ L ILNSV++ SK+ AGKM+L E EF +A +L+E
Sbjct: 414 DMSRPEVQSVPGIMENLDQMGVCTNKLFDILNSVLDTSKVGAGKMQLEEAEFTMADVLQE 473
Query: 477 VVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISV 536
VDM G+++GV+VV DPCD SVL V GD +LKQIL NL+ N++KFT EGH+ +
Sbjct: 474 SVDMANVTGVQRGVEVVWDPCDFSVLRCTAVIGDSKRLKQILDNLLGNALKFTDEGHVVL 533
Query: 537 RAAVKKKSFKQDIIASNRNVISKCLS----KLFFRNKEGFDDLDALHSVERNPNLLQFEF 592
R + ++ A +R + + S FFR +E D L + +PNL++F F
Sbjct: 534 RCWATRPIVGSNVRAPSRFMHPRHASGGSFGCFFRAQEDPSHQDHL---QNDPNLVEFYF 590
Query: 593 EVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEP 652
EV DTG GIPK+ + S+FE +VQV G GLGIVQS V LM GEI+I DKEP
Sbjct: 591 EVVDTGIGIPKENRMSVFENYVQVNNGQGGTGL----GLGIVQSFVRLMGGEISIKDKEP 646
Query: 653 GERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMI 712
GERG CF FNVLL + E ++P EE P P L + AS + A +G I
Sbjct: 647 GERGTCFAFNVLLK-ISEMQQPQDIEEGPSV----PSGTL--NLASAFQEANNFKGVHCI 699
Query: 713 LFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLV 772
L++ G E RR+++ ++E S+ +KV +V Q K + L KV+
Sbjct: 700 LYVRGYETRRIMQTWME-SIGVKVWLVPQAKFIGSTLEKVRS------------------ 740
Query: 773 DSLTMSASSSSDTGHHDVALDIKDDYDNVSPHS--KKASSKCLSSFTLVVIDATAGSVSE 830
+S T+ A D + D K+ + + ++ ++ S + S L+VID + G E
Sbjct: 741 NSTTIIA---MDYNNADRCFSFKEKVNQLRNNTGIRRVSLGGIPSGILIVIDVSGGETEE 797
Query: 831 LVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLPICDHVISRPFHGSRLIEVLKL 890
+ + +A R CKVV + + + R+ + L CD V+ +P HGSRL +L
Sbjct: 798 IFQEMAKLARIKHQAPCKVVLLKDIKTPSNDLRKLKDLG-CDLVLRKPVHGSRLFTLLMT 856
Query: 891 LPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFG---------AEAGASISSHC 941
L + L++ + + H P + G E AS
Sbjct: 857 LRD-----------LQVSNAQAQSSHVVGPGIAGNSQQHGLPDVVVPCVQETNAS----- 900
Query: 942 SSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDH 1001
+ L AQ +KPL+G + L+ ED ++ + VL +LGA V +NG A +
Sbjct: 901 TELASCLAQEQKPEDDKPLSGMQILLAEDTLVLQTIQKKVLNQLGALVTVAQNGAVAVNL 960
Query: 1002 VCKILSDL---RKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAH 1058
+ + L +++ +LPY I+MDC+MP M+G+EAT+LIR+EE++Y +H PIIALTAH
Sbjct: 961 LREALEQANASKEDIVSLPYHVILMDCQMPEMDGYEATKLIREEEQRYGIHTPIIALTAH 1020
Query: 1059 AMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
M K DAGMD HLTKP+ + K+++ + S+
Sbjct: 1021 DMEEDLQKAFDAGMDLHLTKPILQKKIVEAICSV 1054
>gi|413932658|gb|AFW67209.1| hypothetical protein ZEAMMB73_026273 [Zea mays]
Length = 737
Score = 424 bits (1090), Expect = e-115, Method: Compositional matrix adjust.
Identities = 277/740 (37%), Positives = 412/740 (55%), Gaps = 66/740 (8%)
Query: 370 EMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL 429
EM L L +Q A QAERKSMNK+ A A ASHD+R++L+AI GLV++ ++A +
Sbjct: 42 EMALNVDLARQKEALRQAERKSMNKSNAFASASHDIRSALSAIAGLVDMSRQEAQSLPAI 101
Query: 430 AENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG 489
ENL + C+ L ILNS+++ SK+E+GKM+L E EF++A +L+E VDM Y G+++G
Sbjct: 102 MENLDQMGVCTNKLFDILNSILDTSKVESGKMQLEEAEFSMADVLQESVDMAYVTGVRRG 161
Query: 490 VDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDI 549
V+VV DPCD SVL V GD +LKQIL NL+ N++KFT EGH+ +R+ + ++
Sbjct: 162 VEVVWDPCDFSVLRCATVLGDSKRLKQILDNLLGNALKFTDEGHVVLRSWATRPIIGSNV 221
Query: 550 IASNRNVISKCLSKLF----FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDK 605
A +R V + F FR ++G D D V+ +PNL++F FEV DTG GIP++K
Sbjct: 222 RAPSRFVHPRHGGGSFLGCLFRARKGPGDQD---HVQNDPNLVEFYFEVVDTGIGIPQEK 278
Query: 606 QNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ S+FE +VQV G LGLGIVQS V LM GEI+I DKEPGERG CF FNVLL
Sbjct: 279 RMSVFENYVQVNNGQGGTG----LGLGIVQSFVRLMGGEISIKDKEPGERGTCFAFNVLL 334
Query: 666 TAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLK 725
+ E ++P EE P D + + AS + A+ +G +L++ G E RR+LK
Sbjct: 335 K-ISEVQQPQDIEEGPSVPLDTLNRSI--YIASAFQEASNFKGVHCVLYVHGYETRRILK 391
Query: 726 RYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDT 785
++E S+ +KV +V Q + + L KV+ +A+++++
Sbjct: 392 TWME-SIEVKVWLVPQAEFIGSTLEKVQS---------------------NSTATATAEC 429
Query: 786 GHHDVALDIKDDY----DNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRD 841
G D K+ +N SP ++A + S LVVID + G E+ + +A R
Sbjct: 430 GSADRCFSSKEMVNLLRNNSSP--RRAILGGIPSGILVVIDVSGGETEEICQEMAKLARI 487
Query: 842 VPSLSCKVVWIDNSVIRNAHSREYRLLPI-CDHVISRPFHGSRLIEVLKLLP-----ECK 895
CKVV +++ I+ + RL + CD V+ +P HGSR +L L + +
Sbjct: 488 KHQAPCKVVLLED--IKTPSNDLRRLKDMGCDLVLRKPVHGSRQFTLLMTLRDLQVLDAQ 545
Query: 896 GASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKC 955
S P++ Q+L P + AS + C + +Q Q G
Sbjct: 546 AQSSHVGPEIAGNRQQQDLPDVVVP--------CVEDTAASTEASCLAQEQ---QKPG-- 592
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK- 1014
+KPL G + L+ ED+ ++ + ++ +LGA V +NG A + + + L +
Sbjct: 593 DDKPLAGMRILLAEDNLVLQSIQRKIMNQLGAFVTVAQNGAMAVNLLREALEQANASEED 652
Query: 1015 --ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGM 1072
+LPY I MDC+MP M+G+EAT+LIR+EE++Y +H PIIALTAH M K +DAGM
Sbjct: 653 IVSLPYHVIFMDCQMPGMDGYEATKLIREEEQRYGIHTPIIALTAHDMEEDLQKAIDAGM 712
Query: 1073 DFHLTKPLQKDKLLDVVKSI 1092
D HL KP+ + K++D V+S+
Sbjct: 713 DLHLAKPISRKKIVDAVRSV 732
>gi|413932650|gb|AFW67201.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
Length = 1021
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 275/741 (37%), Positives = 410/741 (55%), Gaps = 73/741 (9%)
Query: 370 EMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL 429
EM L L +Q A QAERKSMNK+ A A ASHD+R++L+AI GLV++ ++A +
Sbjct: 43 EMALNVDLARQKEALRQAERKSMNKSNAFASASHDIRSALSAIAGLVDMSRQEAQSLPAV 102
Query: 430 AENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG 489
ENL + C+ L ILNS+++ SK+E+GKM+L E EF++A +L+E VDM Y G+++G
Sbjct: 103 MENLDQMGVCTNKLFDILNSILDTSKVESGKMQLEEAEFSMADVLQESVDMAYVTGVRRG 162
Query: 490 VDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDI 549
V+VV DPCD SVL V GD +LKQIL NL+ N++KFT EGH+ +R+ + ++
Sbjct: 163 VEVVWDPCDFSVLRCAAVLGDSKRLKQILDNLLGNALKFTDEGHVVLRSWATRPITGSNV 222
Query: 550 IASNRNVISK----CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDK 605
A +R V + FR ++ D D V+ +PNL++F FEV DTG GIP++K
Sbjct: 223 RAPSRFVHPRHGGGGFLGCLFRARKRPGDQD---HVQNDPNLVEFYFEVVDTGIGIPQEK 279
Query: 606 QNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ S+FE +VQV G LGLGIVQS V LM GEI+I DKEPGERG CF FNVLL
Sbjct: 280 KMSVFENYVQVNNGQGGTG----LGLGIVQSFVRLMGGEISIKDKEPGERGTCFAFNVLL 335
Query: 666 TAVCERERPDTDEEDPRTHNDWPQTGLHQ--HFASFWGSAAKSEGSQMILFIAGEERRRV 723
+ E ++P EE P P L++ AS + A+ +G +L++ G E RR+
Sbjct: 336 R-ISEVQQPQDIEEGPSV----PLGTLNRSISIASAFQEASNFKGVHCVLYVHGYETRRI 390
Query: 724 LKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSS 783
L+ ++E S+ +KV +V Q + + L KV+ +A++++
Sbjct: 391 LQTWME-SIEVKVWLVPQAEFIGSTLEKVQS---------------------NSTATATA 428
Query: 784 DTGHHDVALDIKDDY----DNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFK 839
+ G D K+ +N SP ++A + S LVVID + G E+ + +A
Sbjct: 429 ECGSADRCFSSKEMVNLLRNNSSP--RRAILGGIPSGILVVIDVSGGETEEICQEMAKLS 486
Query: 840 RDVPSLSCKVVWIDNSVIRNAHSREYRLLPI-CDHVISRPFHGSRLIEVLKLLP-----E 893
R CKVV +++ I+ + RL + CD V+ +P HGSR +L L +
Sbjct: 487 RIKHQAPCKVVLLED--IKTPSNDLRRLKDMGCDLVLRKPVHGSRQFTLLMTLRDLQVLD 544
Query: 894 CKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDG 953
+ S P++ + Q+L P + + AS + C AQ G
Sbjct: 545 AQAQSSHVGPEIAGNSQQQDLPDVVVPCVEDTV--------ASTEASC------LAQKPG 590
Query: 954 KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEG 1013
+KPL G + L+ ED+ ++ + ++ +LGA V +NG A + + + L
Sbjct: 591 --DDKPLAGMRILLAEDNLVLQSIQRKIMNQLGAFVTVAQNGTMAVNLLREALEQANASE 648
Query: 1014 K---ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDA 1070
+ +LPY I MDC+MP M+G+EAT+LIR+EE++Y +H PIIALTAH M K +DA
Sbjct: 649 EDIVSLPYHVIFMDCQMPGMDGYEATKLIREEEQRYGIHAPIIALTAHDMEEDLQKAIDA 708
Query: 1071 GMDFHLTKPLQKDKLLDVVKS 1091
GMD HL KP+ + K++D V+S
Sbjct: 709 GMDLHLAKPISRKKIVDAVRS 729
>gi|413932652|gb|AFW67203.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
gi|413932653|gb|AFW67204.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
Length = 886
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 275/741 (37%), Positives = 410/741 (55%), Gaps = 73/741 (9%)
Query: 370 EMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL 429
EM L L +Q A QAERKSMNK+ A A ASHD+R++L+AI GLV++ ++A +
Sbjct: 43 EMALNVDLARQKEALRQAERKSMNKSNAFASASHDIRSALSAIAGLVDMSRQEAQSLPAV 102
Query: 430 AENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG 489
ENL + C+ L ILNS+++ SK+E+GKM+L E EF++A +L+E VDM Y G+++G
Sbjct: 103 MENLDQMGVCTNKLFDILNSILDTSKVESGKMQLEEAEFSMADVLQESVDMAYVTGVRRG 162
Query: 490 VDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDI 549
V+VV DPCD SVL V GD +LKQIL NL+ N++KFT EGH+ +R+ + ++
Sbjct: 163 VEVVWDPCDFSVLRCAAVLGDSKRLKQILDNLLGNALKFTDEGHVVLRSWATRPITGSNV 222
Query: 550 IASNRNVISK----CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDK 605
A +R V + FR ++ D D V+ +PNL++F FEV DTG GIP++K
Sbjct: 223 RAPSRFVHPRHGGGGFLGCLFRARKRPGDQD---HVQNDPNLVEFYFEVVDTGIGIPQEK 279
Query: 606 QNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ S+FE +VQV G LGLGIVQS V LM GEI+I DKEPGERG CF FNVLL
Sbjct: 280 KMSVFENYVQVNNGQGGTG----LGLGIVQSFVRLMGGEISIKDKEPGERGTCFAFNVLL 335
Query: 666 TAVCERERPDTDEEDPRTHNDWPQTGLHQ--HFASFWGSAAKSEGSQMILFIAGEERRRV 723
+ E ++P EE P P L++ AS + A+ +G +L++ G E RR+
Sbjct: 336 R-ISEVQQPQDIEEGPSV----PLGTLNRSISIASAFQEASNFKGVHCVLYVHGYETRRI 390
Query: 724 LKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSS 783
L+ ++E S+ +KV +V Q + + L KV+ +A++++
Sbjct: 391 LQTWME-SIEVKVWLVPQAEFIGSTLEKVQS---------------------NSTATATA 428
Query: 784 DTGHHDVALDIKDDY----DNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFK 839
+ G D K+ +N SP ++A + S LVVID + G E+ + +A
Sbjct: 429 ECGSADRCFSSKEMVNLLRNNSSP--RRAILGGIPSGILVVIDVSGGETEEICQEMAKLS 486
Query: 840 RDVPSLSCKVVWIDNSVIRNAHSREYRLLPI-CDHVISRPFHGSRLIEVLKLLP-----E 893
R CKVV +++ I+ + RL + CD V+ +P HGSR +L L +
Sbjct: 487 RIKHQAPCKVVLLED--IKTPSNDLRRLKDMGCDLVLRKPVHGSRQFTLLMTLRDLQVLD 544
Query: 894 CKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDG 953
+ S P++ + Q+L P + + AS + C AQ G
Sbjct: 545 AQAQSSHVGPEIAGNSQQQDLPDVVVPCVEDTV--------ASTEASC------LAQKPG 590
Query: 954 KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEG 1013
+KPL G + L+ ED+ ++ + ++ +LGA V +NG A + + + L
Sbjct: 591 --DDKPLAGMRILLAEDNLVLQSIQRKIMNQLGAFVTVAQNGTMAVNLLREALEQANASE 648
Query: 1014 K---ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDA 1070
+ +LPY I MDC+MP M+G+EAT+LIR+EE++Y +H PIIALTAH M K +DA
Sbjct: 649 EDIVSLPYHVIFMDCQMPGMDGYEATKLIREEEQRYGIHAPIIALTAHDMEEDLQKAIDA 708
Query: 1071 GMDFHLTKPLQKDKLLDVVKS 1091
GMD HL KP+ + K++D V+S
Sbjct: 709 GMDLHLAKPISRKKIVDAVRS 729
>gi|413932651|gb|AFW67202.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
Length = 990
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 274/741 (36%), Positives = 409/741 (55%), Gaps = 73/741 (9%)
Query: 370 EMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL 429
EM L L +Q A QAERKSMNK+ A A ASHD+R++L+AI GLV++ ++A +
Sbjct: 43 EMALNVDLARQKEALRQAERKSMNKSNAFASASHDIRSALSAIAGLVDMSRQEAQSLPAV 102
Query: 430 AENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG 489
ENL + C+ L ILNS+++ SK+E+GKM+L E EF++A +L+E VDM Y G+++G
Sbjct: 103 MENLDQMGVCTNKLFDILNSILDTSKVESGKMQLEEAEFSMADVLQESVDMAYVTGVRRG 162
Query: 490 VDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDI 549
V+VV DPCD SVL V GD +LKQIL NL+ N++KFT EGH+ +R+ + ++
Sbjct: 163 VEVVWDPCDFSVLRCAAVLGDSKRLKQILDNLLGNALKFTDEGHVVLRSWATRPITGSNV 222
Query: 550 IASNRNVISK----CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDK 605
A +R V + FR ++ D D V+ +PNL++F FEV DTG GIP++K
Sbjct: 223 RAPSRFVHPRHGGGGFLGCLFRARKRPGDQD---HVQNDPNLVEFYFEVVDTGIGIPQEK 279
Query: 606 QNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ S+FE +VQV G GLGIVQS V LM GEI+I DKEPGERG CF FNVLL
Sbjct: 280 KMSVFENYVQVNNGQGGTGL----GLGIVQSFVRLMGGEISIKDKEPGERGTCFAFNVLL 335
Query: 666 TAVCERERPDTDEEDPRTHNDWPQTGLHQ--HFASFWGSAAKSEGSQMILFIAGEERRRV 723
+ E ++P EE P P L++ AS + A+ +G +L++ G E RR+
Sbjct: 336 R-ISEVQQPQDIEEGPSV----PLGTLNRSISIASAFQEASNFKGVHCVLYVHGYETRRI 390
Query: 724 LKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSS 783
L+ ++E S+ +KV +V Q + + L KV+ +A++++
Sbjct: 391 LQTWME-SIEVKVWLVPQAEFIGSTLEKVQS---------------------NSTATATA 428
Query: 784 DTGHHDVALDIKDDY----DNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFK 839
+ G D K+ +N SP ++A + S LVVID + G E+ + +A
Sbjct: 429 ECGSADRCFSSKEMVNLLRNNSSP--RRAILGGIPSGILVVIDVSGGETEEICQEMAKLS 486
Query: 840 RDVPSLSCKVVWIDNSVIRNAHSREYRLLPI-CDHVISRPFHGSRLIEVLKLLP-----E 893
R CKVV +++ I+ + RL + CD V+ +P HGSR +L L +
Sbjct: 487 RIKHQAPCKVVLLED--IKTPSNDLRRLKDMGCDLVLRKPVHGSRQFTLLMTLRDLQVLD 544
Query: 894 CKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDG 953
+ S P++ + Q+L P + + AS + C AQ G
Sbjct: 545 AQAQSSHVGPEIAGNSQQQDLPDVVVPCVEDTV--------ASTEASC------LAQKPG 590
Query: 954 KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEG 1013
+KPL G + L+ ED+ ++ + ++ +LGA V +NG A + + + L
Sbjct: 591 --DDKPLAGMRILLAEDNLVLQSIQRKIMNQLGAFVTVAQNGTMAVNLLREALEQANASE 648
Query: 1014 K---ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDA 1070
+ +LPY I MDC+MP M+G+EAT+LIR+EE++Y +H PIIALTAH M K +DA
Sbjct: 649 EDIVSLPYHVIFMDCQMPGMDGYEATKLIREEEQRYGIHAPIIALTAHDMEEDLQKAIDA 708
Query: 1071 GMDFHLTKPLQKDKLLDVVKS 1091
GMD HL KP+ + K++D V+S
Sbjct: 709 GMDLHLAKPISRKKIVDAVRS 729
>gi|413932654|gb|AFW67205.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
Length = 875
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 275/741 (37%), Positives = 410/741 (55%), Gaps = 73/741 (9%)
Query: 370 EMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL 429
EM L L +Q A QAERKSMNK+ A A ASHD+R++L+AI GLV++ ++A +
Sbjct: 43 EMALNVDLARQKEALRQAERKSMNKSNAFASASHDIRSALSAIAGLVDMSRQEAQSLPAV 102
Query: 430 AENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG 489
ENL + C+ L ILNS+++ SK+E+GKM+L E EF++A +L+E VDM Y G+++G
Sbjct: 103 MENLDQMGVCTNKLFDILNSILDTSKVESGKMQLEEAEFSMADVLQESVDMAYVTGVRRG 162
Query: 490 VDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDI 549
V+VV DPCD SVL V GD +LKQIL NL+ N++KFT EGH+ +R+ + ++
Sbjct: 163 VEVVWDPCDFSVLRCAAVLGDSKRLKQILDNLLGNALKFTDEGHVVLRSWATRPITGSNV 222
Query: 550 IASNRNVISK----CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDK 605
A +R V + FR ++ D D V+ +PNL++F FEV DTG GIP++K
Sbjct: 223 RAPSRFVHPRHGGGGFLGCLFRARKRPGDQD---HVQNDPNLVEFYFEVVDTGIGIPQEK 279
Query: 606 QNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ S+FE +VQV G LGLGIVQS V LM GEI+I DKEPGERG CF FNVLL
Sbjct: 280 KMSVFENYVQVNNGQGGTG----LGLGIVQSFVRLMGGEISIKDKEPGERGTCFAFNVLL 335
Query: 666 TAVCERERPDTDEEDPRTHNDWPQTGLHQ--HFASFWGSAAKSEGSQMILFIAGEERRRV 723
+ E ++P EE P P L++ AS + A+ +G +L++ G E RR+
Sbjct: 336 R-ISEVQQPQDIEEGPSV----PLGTLNRSISIASAFQEASNFKGVHCVLYVHGYETRRI 390
Query: 724 LKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSS 783
L+ ++E S+ +KV +V Q + + L KV+ +A++++
Sbjct: 391 LQTWME-SIEVKVWLVPQAEFIGSTLEKVQS---------------------NSTATATA 428
Query: 784 DTGHHDVALDIKDDY----DNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFK 839
+ G D K+ +N SP ++A + S LVVID + G E+ + +A
Sbjct: 429 ECGSADRCFSSKEMVNLLRNNSSP--RRAILGGIPSGILVVIDVSGGETEEICQEMAKLS 486
Query: 840 RDVPSLSCKVVWIDNSVIRNAHSREYRLLPI-CDHVISRPFHGSRLIEVLKLLP-----E 893
R CKVV +++ I+ + RL + CD V+ +P HGSR +L L +
Sbjct: 487 RIKHQAPCKVVLLED--IKTPSNDLRRLKDMGCDLVLRKPVHGSRQFTLLMTLRDLQVLD 544
Query: 894 CKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDG 953
+ S P++ + Q+L P + + AS + C AQ G
Sbjct: 545 AQAQSSHVGPEIAGNSQQQDLPDVVVPCVEDTV--------ASTEASC------LAQKPG 590
Query: 954 KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEG 1013
+KPL G + L+ ED+ ++ + ++ +LGA V +NG A + + + L
Sbjct: 591 --DDKPLAGMRILLAEDNLVLQSIQRKIMNQLGAFVTVAQNGTMAVNLLREALEQANASE 648
Query: 1014 K---ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDA 1070
+ +LPY I MDC+MP M+G+EAT+LIR+EE++Y +H PIIALTAH M K +DA
Sbjct: 649 EDIVSLPYHVIFMDCQMPGMDGYEATKLIREEEQRYGIHAPIIALTAHDMEEDLQKAIDA 708
Query: 1071 GMDFHLTKPLQKDKLLDVVKS 1091
GMD HL KP+ + K++D V+S
Sbjct: 709 GMDLHLAKPISRKKIVDAVRS 729
>gi|55771375|dbj|BAD72542.1| putative histidine kinase 1 [Oryza sativa Japonica Group]
gi|118790664|tpd|FAA00247.1| TPA: histidine kinase [Oryza sativa Japonica Group]
gi|125554320|gb|EAY99925.1| hypothetical protein OsI_21926 [Oryza sativa Indica Group]
Length = 1048
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 274/820 (33%), Positives = 431/820 (52%), Gaps = 86/820 (10%)
Query: 293 PTKFNMK-IMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIA 351
P K ++ + KY F C+ I+GVQ + + + + + R + + A
Sbjct: 290 PPKLDVHGVKSDKYRFACTNFDISGVQMGFRVVLRKSAMVGVFRRGGVTMVAVACAAAAA 349
Query: 352 GVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAA 411
++ L + +A RE L A L + +A QAERKSMNK+ A A ASHD+R++LAA
Sbjct: 350 ATVACVLMARALRRAVAREAALGADLARHRDALRQAERKSMNKSNAFASASHDIRSALAA 409
Query: 412 IIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLA 471
+ GLVE+ +ANP ++ +NL + C+ LL ILNS+++ +K+E+GK++L E EFN+A
Sbjct: 410 VAGLVEVSRPEANP--NIVDNLNQMELCTNKLLDILNSILDTTKVESGKVQLEEVEFNMA 467
Query: 472 QLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE 531
+LEE VDM VGI KG++V+ DPCD SV+ ++ GD + KQIL NL+ N+MKFT E
Sbjct: 468 DVLEESVDMANVVGITKGIEVIWDPCDFSVMKCDNIIGDSKRFKQILDNLLGNAMKFTQE 527
Query: 532 GHISVRAAVKKKSFKQDIIASNR---NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLL 588
GH+ +RA + + I A +R + FF KE ++ + ++ +PN +
Sbjct: 528 GHVILRAWANRPIARGSIGAPSRFAYRSLENNFFSFFFGAKEDRVSQNSFNPLQNDPNSV 587
Query: 589 QFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIA 648
+F FEV DTG GIPK+K+ S+FE +VQVKE G LGLGIVQS V LM GEI+I
Sbjct: 588 EFYFEVVDTGIGIPKEKRESVFENYVQVKEGHGGTG----LGLGIVQSFVRLMGGEISIK 643
Query: 649 DKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEG 708
+KEPGERG CF FNVLL + + EE P T ++ AS + +G
Sbjct: 644 EKEPGERGTCFGFNVLLKTSGNQAAEEDIEEGPSTVSELDIR------ASVFRETNCFKG 697
Query: 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIG--YAEK 766
ILF+ G+E RRVL+ ++E S+ +KV +V +++ L K + D + ++ K
Sbjct: 698 WHCILFVHGDETRRVLQAWME-SIGMKVWMVPGVESISSTLEKARSSRDDCDVDRCFSSK 756
Query: 767 PESSLVDSLTMSASS--SSDTG-HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDA 823
S V T+ ++ + + G HH + + L+++D
Sbjct: 757 EMVSQVLPTTLRNNNIMARNLGEHHPLGM-------------------------LLIVDV 791
Query: 824 TAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLPI-CDHVISRPFHGS 882
+ G + + + +F + + CK V + + +R ++ R + CD ++ +P HGS
Sbjct: 792 SNGQLENIQRQARDFTQMRSQVPCKFVCLTD--LRTSYKDFRRFEEMSCDLILRKPVHGS 849
Query: 883 RLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCS 942
RL +L L + + + P+++ G E ++ H
Sbjct: 850 RLYSLLMTLRDVQSS------------------------PMHRSSLVGHE--NYVTRHQD 883
Query: 943 SLQQVAAQSDGKCSE-------KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNG 995
S VA G+ + +PL+G L+VED ++ + +L +LGA E+ +G
Sbjct: 884 SANIVALAEVGRLDQGLKTEEDRPLDGMHVLLVEDTLVLQTIQRKMLNQLGAIVELAGDG 943
Query: 996 KEA---FDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPI 1052
+A F + S + LPYD I MDC+MP M+G+EATR IR+EE +Y + PI
Sbjct: 944 AKAVDMFRDAIERASVSEEHSVPLPYDVIFMDCQMPRMDGYEATRRIREEESRYGIRTPI 1003
Query: 1053 IALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
IALTAH+M K +D GMD H+TKP+++ ++++ V +
Sbjct: 1004 IALTAHSMEDDLQKAIDVGMDLHMTKPIERRRIVEAVHGV 1043
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 15/167 (8%)
Query: 8 KRLCPKIVLRPLCFLIFLGFCAFGTLKIWLMTIKTAHEIKQEAS-GVLNNSFSEIETTAR 66
+R C +L PL + C T+ + + E+ EA+ G ++++ I R
Sbjct: 12 RRCCYFWILFPLAVI---ATCMTITVVTFCSSTMYMTEVMGEATKGAMDSALMHIAGNMR 68
Query: 67 LLLPLNSSAFNLARSLSSYLNGTELSFDTIQTKVAPTLFLALSTIPHLSLVSYLGLDGLS 126
LL N S F +A +L ++ G SF + V P LFLA S P + +SY +DG +
Sbjct: 69 PLLEANRSVFTIANTL--HVQGNMASF----SHVGPKLFLAFSMQPLQAQISYAAVDGAA 122
Query: 127 FSYFNDG---DQTLAVYSNSSFAANWYTQPVNRDTGMLYGNAIASIP 170
F+Y+ G + A+++ + W+TQ V+ TG GNA A+ P
Sbjct: 123 FAYYRAGGGDGEARAMFARPN--GTWFTQAVDPATGRPVGNATAAAP 167
>gi|125596271|gb|EAZ36051.1| hypothetical protein OsJ_20358 [Oryza sativa Japonica Group]
Length = 1024
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 274/820 (33%), Positives = 431/820 (52%), Gaps = 86/820 (10%)
Query: 293 PTKFNMK-IMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIA 351
P K ++ + KY F C+ I+GVQ + + + + + R + + A
Sbjct: 266 PPKLDVHGVKSDKYRFACTNFDISGVQMGFRVVLRKSAMVGVFRRGGVTMVAVACAAAAA 325
Query: 352 GVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAA 411
++ L + +A RE L A L + +A QAERKSMNK+ A A ASHD+R++LAA
Sbjct: 326 ATVACVLMARALRRAVAREAALGADLARHRDALRQAERKSMNKSNAFASASHDIRSALAA 385
Query: 412 IIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLA 471
+ GLVE+ +ANP ++ +NL + C+ LL ILNS+++ +K+E+GK++L E EFN+A
Sbjct: 386 VAGLVEVSRPEANP--NIVDNLNQMELCTNKLLDILNSILDTTKVESGKVQLEEVEFNMA 443
Query: 472 QLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE 531
+LEE VDM VGI KG++V+ DPCD SV+ ++ GD + KQIL NL+ N+MKFT E
Sbjct: 444 DVLEESVDMANVVGITKGIEVIWDPCDFSVMKCDNIIGDSKRFKQILDNLLGNAMKFTQE 503
Query: 532 GHISVRAAVKKKSFKQDIIASNR---NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLL 588
GH+ +RA + + I A +R + FF KE ++ + ++ +PN +
Sbjct: 504 GHVILRAWANRPIARGSIGAPSRFAYRSLENNFFSFFFGAKEDRVSQNSFNPLQNDPNSV 563
Query: 589 QFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIA 648
+F FEV DTG GIPK+K+ S+FE +VQVKE G LGLGIVQS V LM GEI+I
Sbjct: 564 EFYFEVVDTGIGIPKEKRESVFENYVQVKEGHGGTG----LGLGIVQSFVRLMGGEISIK 619
Query: 649 DKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEG 708
+KEPGERG CF FNVLL + + EE P T ++ AS + +G
Sbjct: 620 EKEPGERGTCFGFNVLLKTSGNQAAEEDIEEGPSTVSELDIR------ASVFRETNCFKG 673
Query: 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIG--YAEK 766
ILF+ G+E RRVL+ ++E S+ +KV +V +++ L K + D + ++ K
Sbjct: 674 WHCILFVHGDETRRVLQAWME-SIGMKVWMVPGVESISSTLEKARSSRDDCDVDRCFSSK 732
Query: 767 PESSLVDSLTMSASS--SSDTG-HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDA 823
S V T+ ++ + + G HH + + L+++D
Sbjct: 733 EMVSQVLPTTLRNNNIMARNLGEHHPLGM-------------------------LLIVDV 767
Query: 824 TAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLPI-CDHVISRPFHGS 882
+ G + + + +F + + CK V + + +R ++ R + CD ++ +P HGS
Sbjct: 768 SNGQLENIQRQARDFTQMRSQVPCKFVCLTD--LRTSYKDFRRFEEMSCDLILRKPVHGS 825
Query: 883 RLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCS 942
RL +L L + + + P+++ G E ++ H
Sbjct: 826 RLYSLLMTLRDVQSS------------------------PMHRSSLVGHE--NYVTRHQD 859
Query: 943 SLQQVAAQSDGKCSE-------KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNG 995
S VA G+ + +PL+G L+VED ++ + +L +LGA E+ +G
Sbjct: 860 SANIVALAEVGRLDQGLKTEEDRPLDGMHVLLVEDTLVLQTIQRKMLNQLGAIVELAGDG 919
Query: 996 KEAFDHVCKIL---SDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPI 1052
+A D + S + LPYD I MDC+MP M+G+EATR IR+EE +Y + PI
Sbjct: 920 AKAVDMFRDAIERASVSEEHSVPLPYDVIFMDCQMPRMDGYEATRRIREEESRYGIRTPI 979
Query: 1053 IALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
IALTAH+M K +D GMD H+TKP+++ ++++ V +
Sbjct: 980 IALTAHSMEDDLQKAIDVGMDLHMTKPIERRRIVEAVHGV 1019
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 8 KRLCPKIVLRPLCFLIFLGFCAFGTLKIWLMTIKTAHEIKQEAS-GVLNNSFSEIETTAR 66
+R C +L PL + C T+ + + E+ EA+ G ++++ I R
Sbjct: 12 RRCCYFWILFPLAVI---ATCMTITVVTFCSSTMYMTEVMGEATKGAMDSALMHIAGNMR 68
Query: 67 LLLPLNSSAFNLARSLSSYLNGTELSFDTIQTKVAPTLFLALSTIPHLSLVSYLGLDGLS 126
LL N S F +A +L ++ G SF + V P LFLA S P + +SY +DG +
Sbjct: 69 PLLEANRSVFTIANTL--HVQGNMASF----SHVGPKLFLAFSMQPLQAQISYAAVDGAA 122
Query: 127 FSYFNDG 133
F+Y+ G
Sbjct: 123 FAYYRAG 129
>gi|242034271|ref|XP_002464530.1| hypothetical protein SORBIDRAFT_01g020200 [Sorghum bicolor]
gi|241918384|gb|EER91528.1| hypothetical protein SORBIDRAFT_01g020200 [Sorghum bicolor]
Length = 755
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 272/757 (35%), Positives = 401/757 (52%), Gaps = 66/757 (8%)
Query: 358 LFIILIA--KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGL 415
F++L A ++ RE L A L++Q +A QAERKS+NKT A A ASHD+R++LAAI GL
Sbjct: 30 FFLVLRALRRSMAREASLRANLVRQNDALRQAERKSLNKTNAFAGASHDIRSALAAISGL 89
Query: 416 VELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLE 475
V++ +A + +L + C+ LLGILNS+++ SK+E+GKM+L E EFN+A +LE
Sbjct: 90 VDVSRVEAQTNPQVLHHLDQMDVCTNKLLGILNSILDTSKVESGKMQLDESEFNVASVLE 149
Query: 476 EVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHIS 535
E +DM VG+ KG++VV DPCD S+L +V GD +LKQIL N++ NS+KFT +GH+
Sbjct: 150 ESMDMINIVGLSKGLEVVWDPCDLSILKCGNVVGDCRRLKQILDNVLGNSVKFTQQGHVV 209
Query: 536 VRAAVKKKSFKQDIIAS--NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFE 593
+RA + + + +R S L LF + +E +D + S++ +P+ ++ FE
Sbjct: 210 LRAWANRPVVARSSVCCVPSRFGCSNFLC-LFIKGREHHEDCCSFSSIQNDPDSVELYFE 268
Query: 594 VDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
VDDTG GIPK+K+ +FE++VQVKE G GLGIVQS V LM GEI+I DK PG
Sbjct: 269 VDDTGIGIPKEKRELVFEDYVQVKEGQGGTGL----GLGIVQSFVRLMGGEISIKDKGPG 324
Query: 654 ERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMIL 713
+ G C FNV + E+ E+ + + ++F + EG +L
Sbjct: 325 KAGTCIGFNVFMKMGGIHEQQHDIEQGSSSSSQCCIGA-----SAFREANTSFEGGHCML 379
Query: 714 FIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVD 773
+ G+E RR+L+ ++EN L IKV +V Q + L V +V
Sbjct: 380 LVHGDETRRILQSWLEN-LGIKVWLVPQLDSFPSALENV----------------CHVVS 422
Query: 774 SLTMSASSSSDTGHHDVALDIKDDYDNVSPHSKKASS--KCLSSF-------TLVVIDAT 824
S + S S H D +D + P S K+SS K +F LVVIDA
Sbjct: 423 SASPRTPSDSFECHADFCFRSRDTVSEILPVSLKSSSSFKRSGAFGANNLSGVLVVIDAH 482
Query: 825 AGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLPICDHVISRPFHGSRL 884
G + E + NF + CK+V + ++ + R CD V+ +P HGSRL
Sbjct: 483 YGKM-ENICTEVNFPEIKKQIPCKIVCLADANTSSGDLGRLRHHTCCDLVLQKPIHGSRL 541
Query: 885 IEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSL 944
+L L + + A R+ P S ++ NP N A S+ +
Sbjct: 542 YALLNTLRDLQMAQARHHP------SHVNPENAETRNPEN----------AGTSAMVALA 585
Query: 945 QQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCK 1004
Q +++ EK L G++ L+VED + + +L +LGA V +G +A
Sbjct: 586 QSSSSEPKRDDEEKSLTGRRVLLVEDTLTLQTIGKKILYQLGADVAVAEDGAKAVSMFEA 645
Query: 1005 ILSDLRKEGKAL------PYDYIMMDCEMPVMNGWEATRLIRKEEEQYD-VHIPIIALTA 1057
L+ K G + PYD I+MDC+MPVM+G+EATR IR+ E Y VH PIIALTA
Sbjct: 646 ALAQANKAGSRMDAAASTPYDVILMDCQMPVMDGYEATRRIREVESCYGVVHTPIIALTA 705
Query: 1058 HAMAGVA--SKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
HAM K + AGMD HLTKP+++ + + ++ +
Sbjct: 706 HAMEDEEQWQKTIAAGMDLHLTKPMERRSIAEAIRRV 742
>gi|357168523|ref|XP_003581688.1| PREDICTED: histidine kinase CKI1-like [Brachypodium distachyon]
Length = 759
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 246/736 (33%), Positives = 377/736 (51%), Gaps = 69/736 (9%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A QAERKSMNK+ A A ASHD+R++LAA G +E+ +A + NL + C+K
Sbjct: 52 ALRQAERKSMNKSNAFASASHDIRSALAAFAGYIEVSRPEAQTNPIVMHNLNAMDVCTKK 111
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
L ILN++M+ SK+E+GKM+L E EFN+A LEE VDM +GI KGV+VV DPCD SVL
Sbjct: 112 LFDILNTIMDTSKVESGKMQLEEVEFNMADALEESVDMVSVIGINKGVEVVWDPCDFSVL 171
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDI-----IASNRNVI 557
+V GD + KQIL NL+ N++KFT EGH+ +RA + + I A R+
Sbjct: 172 LCENVVGDCRRFKQILDNLLGNALKFTQEGHVVLRAWANRPIARSSICTPSRFAHRRSGG 231
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
F + +S+ +P+ ++F FEV DTG GIP +K+ ++FE +VQVK
Sbjct: 232 GGGFWGSVFGKGRNCTKQNPCNSLWNDPDSVEFYFEVVDTGIGIPMEKREAVFENYVQVK 291
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTD 677
E G GLGLGIVQS V LM GEI I DKEPGE G CF FNV L + ER+
Sbjct: 292 EGHG----GTGLGLGIVQSFVRLMGGEIGIKDKEPGETGTCFGFNVSLK-ISERQDQQVA 346
Query: 678 EEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVT 737
+ + T+ + A + +G +L + E RR+L ++E S+ +KV
Sbjct: 347 DIEQGTYTSSSKMSDSDIRALLFRETNCFKGGHCLLVVHEYETRRILHTWME-SIGMKVW 405
Query: 738 IVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDD 797
I+ + + L ++ +S+ S + S D D K+
Sbjct: 406 IIPRVDLISSTLERIH--------------STSVSPSRASLSHSGLDCETTDWCFSPKEM 451
Query: 798 YDNVSPHSKKASSKCLSSF-------TLVVIDATAGSVSELVKILANFKRDVPSLSCKVV 850
+ V P + + ++ + LV++D + + ++ + +A+ + CK+V
Sbjct: 452 VNQVLPMALRNNNNMGGNSGGDHPFGALVILDVSNERLDDISREVASLGKIKNQAPCKLV 511
Query: 851 WIDNSVIRNAHSREYRLLPICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEAS 910
+ + ++ + RL D V+ +P HGSRL +L R +++ +
Sbjct: 512 CLAD--LKTSSEDFARLERSFDLVLRKPMHGSRLYRLL-----------RTMRDIQVSPA 558
Query: 911 SQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKC--------SEKPLNG 962
Q C NP K F G +I Q A ++ C ++ L+G
Sbjct: 559 QHPYQACPS-NPGASQKYFH---GIAIREQ---PDQTAGSAETACLPQEPKIQDDRLLDG 611
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA------L 1016
+ L+ ED+ ++ + +L +LGA EV +G A D + L + G + L
Sbjct: 612 MRVLMAEDNQVLQIIQERMLSQLGATVEVAGDGSRAVD---MFIDALERAGVSEGHTVPL 668
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
PYD + MDC+MP+M+G+EAT+ IR+EE Y +H PI+ALTAHA+ + + AGMD HL
Sbjct: 669 PYDLVFMDCQMPLMDGYEATKRIREEETHYKIHTPIVALTAHALEEDLHQTIQAGMDLHL 728
Query: 1077 TKPLQKDKLLDVVKSI 1092
TKP+Q+++++D + I
Sbjct: 729 TKPIQREQIVDALHQI 744
>gi|357118508|ref|XP_003560996.1| PREDICTED: histidine kinase CKI1-like [Brachypodium distachyon]
Length = 1017
Score = 267 bits (682), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 227/715 (31%), Positives = 352/715 (49%), Gaps = 60/715 (8%)
Query: 54 LNNSFSEIETTARLLLPLNSSAFNLARSLSSYL-NGTELSFDTIQTKVAPTLFLALSTIP 112
++ + + + R LL N SA +A +L N + LS+ V TLF A + P
Sbjct: 1 MDAALAHVAGGMRPLLEANRSALAVANALPPITTNQSSLSY------VGTTLFTAFAMQP 54
Query: 113 HLSLVSYL-GLDGLS-FSYFNDGD-QTLAVYSNSSFAANWYTQPVNRDTGMLYGNA--IA 167
++ +SY G DG + F+Y+ D Q A+++ W+TQ + DTG L G A +A
Sbjct: 55 AVAEMSYYAGPDGAAAFTYYRAADGQPRAMFAGGR--RRWFTQAADPDTGRLVGPASPVA 112
Query: 168 SIPIVSANASWFQEVINSTNGYSSLVTGLNKEEGSIFLHTFAMDGTGFISLGFPAKVVID 227
+ + I + + +SL G + + + + A G +S P V+
Sbjct: 113 RPHHLPNYTARLITDIKAGSPRASLGAGWARPGVRMVVFS-AQAAGGVVSADVPIDDVV- 170
Query: 228 LFAALDFHGGDLHLAAADGQVIIQTKLQNTEMVI----YNSTLLLQKLNDDDSPEGSIAN 283
L + + + + L ++ Y S +L + + + EG
Sbjct: 171 ----LAGAAAAARITSGFRLLHVYYALSDSRGAPPSAGYRSLVLESRSHSAEEMEGLFEK 226
Query: 284 HSCVSDKGNPTKFNMKIMGK-KYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSL 342
C + + K + +G Y C+ ++GV L + ++ R
Sbjct: 227 VRCTASAIDAPKLELHDVGPHTYSVACTNFNVSGVNLGIRLVLRNWHEAAMFRRMGIAVA 286
Query: 343 MLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKAS 402
LL + V++L + + ++A RE L A L + A +QAERKSMNK+ A A AS
Sbjct: 287 CLLCVTVALAVVALLVMGRSMRRSAAREAALGADLARHKEAVQQAERKSMNKSNAFASAS 346
Query: 403 HDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKME 462
HD+R++LAA+ GL+ + +A LA+NL + C+ LL ILNS+++M K+E+GKM+
Sbjct: 347 HDIRSALAAVAGLIAVSRPEARANPVLADNLSQMDVCTNKLLDILNSILDMGKVESGKMQ 406
Query: 463 LVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLV 522
L E EF +A++LEE VDM G+ KG++VV DPCD SVL V GD ++KQIL NL+
Sbjct: 407 LEEVEFTMAKVLEESVDMANVTGMAKGIEVVWDPCDFSVLRCGAVVGDCKRVKQILDNLL 466
Query: 523 SNSMKFTSEGHISVRA------AVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLD 576
N+MKFT EG++ +RA A + D +S S+ LF R K+ D
Sbjct: 467 GNAMKFTHEGNVVLRAWANRPIASAAGACADD--SSCGGAPSRLAGGLFRRWKKDGGCAD 524
Query: 577 ALH-----SVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631
+ S+ +P+ ++F EV DTG GIP +K+ S+FE +VQVKE G GL
Sbjct: 525 QQNSAGPKSLRNHPDSVEFYLEVVDTGVGIPMEKRQSVFENYVQVKEGHGGTGL----GL 580
Query: 632 GIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPD-------TDEEDPRTH 684
GIVQS V LM GEI+I KEPGE G CF NV + +ERP D+ +
Sbjct: 581 GIVQSFVRLMGGEISIKYKEPGEAGTCFGLNVFMKL---KERPAEGAVEIMIDQGPSSSS 637
Query: 685 NDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIV 739
+D ++ L + + F +G +L + G E RR+L+ ++E SL +KV +V
Sbjct: 638 SDVYESRLFREASCF-------KGLHCVLLVHGAETRRILQAWME-SLGVKVWLV 684
>gi|297836494|ref|XP_002886129.1| hypothetical protein ARALYDRAFT_480680 [Arabidopsis lyrata subsp.
lyrata]
gi|297331969|gb|EFH62388.1| hypothetical protein ARALYDRAFT_480680 [Arabidopsis lyrata subsp.
lyrata]
Length = 1194
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 274/1091 (25%), Positives = 480/1091 (43%), Gaps = 211/1091 (19%)
Query: 112 PHLSLVSYLGLDGLSFSYFNDGDQTLAVYSNSSFAAN----WYTQPVNRDTGMLYGNAIA 167
P S Y+ D ++S G + ++ ++N S N WY Q ++ TG G +
Sbjct: 193 PASSSTFYIFSDLKNYSISGIGPEDVSGWNNQSIHGNMTAIWYQQQLDPVTGEKLGKPLK 252
Query: 168 SIP-----------IVSANASWFQEVINSTNG--YSSLVTGLNKEEGSIFLHTFAMDGTG 214
P + ASW V + S+ + + SI +D G
Sbjct: 253 IPPDDLINIAGILQVPDGEASWHVTVSKYMDSPLLSAALPVFDASNKSI------VDVVG 306
Query: 215 FISLGFP-AKVVIDLFAALDFHGGDLHLAAADGQVIIQTK----LQNTEMVIYNSTLLLQ 269
+ + +++ DL +D HGG ++L + +G ++ + L+NT N L++
Sbjct: 307 VTTALYSVGQLMRDL---VDVHGGHIYLTSQEGYLLATSTNGPLLKNTT----NGPKLMK 359
Query: 270 KLNDDDSPEGSIANHSCVSDKGNPTKF-------NMKIMGKKYI---FYCS--TLQIAGV 317
+ DS E I + +K +K N+K+ ++Y FY + L I GV
Sbjct: 360 AI---DSEEWVIRAGAQWLEKTYGSKRPQEVHAENVKLGNQRYYIDSFYLNLKRLPIIGV 416
Query: 318 QSVYVLAYDSNGLGSLVSRNNKLSLMLL---VLMFIAGVISLGLFIILIAKAAKREMFLC 374
V+ +G + R K ++L+ V +F G + I+++ +EM L
Sbjct: 417 ----VIIPRKFIMGKVDERAFKTLIILISASVCIFFIGCVC----ILILTNGVSKEMKLR 468
Query: 375 AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLG 434
A LI+Q++A +AE S K+ LA SH++R +AA+IGL+++ D + +
Sbjct: 469 AELIRQLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLSNEQYATVT 528
Query: 435 LIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL 494
IR CS LL +LN+++++SK+E+GK+ L E EF+L + LE +VDM+ I V+ VL
Sbjct: 529 QIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVL 588
Query: 495 DPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQD---IIA 551
D D VRGD +L QI NL+SNS+KFT+ GHI +R + + D +
Sbjct: 589 DLSDDM---PALVRGDSARLVQIFANLISNSIKFTTTGHIILRGWCENINSLHDEMRLTV 645
Query: 552 SNRNVISKCLSKLF-FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIF 610
+ + +KL RN L +N N + FEVDDTG GI K +S+F
Sbjct: 646 DRKKPWAPMKTKLVQHRNH--------LQKSCKNANKMVLWFEVDDTGCGIESSKWDSVF 697
Query: 611 EEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
E F Q + G GLGL IV+++V+ M GEI + K G R ++L+
Sbjct: 698 ESFEQADPSTTRTHGGTGLGLCIVRNLVNKMGGEIKVVQK--NGLGTLMRLYLILST--- 752
Query: 671 RERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
P+T +++ + F+ + G ++L + G R + +++
Sbjct: 753 ---PETADQN-----------IQPDFSKY--------GLVVLLSMYGSTARMITSKWLR- 789
Query: 731 SLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHDV 790
K I E + EL ++ R D L M + +S +++
Sbjct: 790 ----KHGIATVEASDWNELTQIIR------------------DLLEMGSRDNSFDSQNNI 827
Query: 791 ALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVV 850
A ++ + N+ + + + + V+D T E + L F S K
Sbjct: 828 ADSLRAELSNI---EEIKNPVFVVVVDIGVLDLTTDIWKEQLNYLDRF-----SNKAKFA 879
Query: 851 WI----DNSVIRNAHSREYRLLPICDHVISRPFHGSRLIEVLKLL----PECKGASQR-- 900
W+ +++++ R+ ++ ++++P + +++I++L+ + C G R
Sbjct: 880 WLLKHDTSNIVKTELRRKGHVM-----MVNKPLYKAKMIQILEAVIKNRKRCNGLRNRGN 934
Query: 901 --------------NFPKLKMEASSQ-----ELQHCTDPNPLNK--LKSFGAEAGAS--I 937
F + SS+ + P+ L+ LK++ +A S
Sbjct: 935 GSDESHDFLEIDPTQFDTCSSDDSSETSGEKHIDKSVQPSTLHSPVLKNYLIDANNSNDD 994
Query: 938 SSHCSSLQQVAAQSDGK-----------CSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLG 986
S+ S+ Q+ + D K ++K L G + L+ ED ++ +V + +L K+G
Sbjct: 995 STSASTTQKNLEEEDWKDRLYSGIALDGKNQKSLEGIRILLAEDTPVLQRVATIMLEKMG 1054
Query: 987 AKFEVCRNGKEAFDHV-------------------------CKILSDLRKEGKALPYDYI 1021
A +G++A D + S LR PYD I
Sbjct: 1055 ATVTAVWDGQQAVDSLNYRSINVQDPTGEPTSSEEETANNSINPQSSLRNSS---PYDLI 1111
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MDC+MP M+G++AT+ IR+ E ++HIPI+ALTAHAM+ +K ++ GMD +LTKP+
Sbjct: 1112 LMDCQMPKMDGYDATKAIRRAEIGTELHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPID 1171
Query: 1082 KDKLLDVVKSI 1092
+ ++ + S+
Sbjct: 1172 RKLMVSTILSL 1182
>gi|4586626|dbj|BAA32085.1| histidine kinase 1 [Arabidopsis thaliana]
Length = 1207
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 272/1082 (25%), Positives = 471/1082 (43%), Gaps = 191/1082 (17%)
Query: 112 PHLSLVSYLGLDGLSFSYFNDGDQTLAVYSNSSFAAN----WYTQPVNRDTGMLYGNAIA 167
P S Y+ D ++S G + ++ ++N S N WY Q ++ TG G +
Sbjct: 204 PASSSTFYIFSDLKNYSISGTGPEDVSGWNNKSIHGNMSAIWYQQQLDPVTGENLGKPLK 263
Query: 168 SIPIVSANASWFQEVINSTNGYSSLVTG-LNKEEGSIFLHTFAMDGTGFISLGFPAKVVI 226
P N + +V + + V+ ++ S L F +++ V
Sbjct: 264 IPPDDLINIAGISQVPDGEASWHVTVSKYMDSPLLSAALPVFDASNKSIVAV---VGVTT 320
Query: 227 DLFAA-------LDFHGGDLHLAAADGQVIIQTKLQNTEMVIYNSTLLLQKLNDDDSPEG 279
L++ ++ HGG ++L + +G ++ + ++ N++ Q + DS E
Sbjct: 321 ALYSVGQLMRDLVEVHGGHIYLTSQEGYLLATS---TDGPLLKNTSNGPQLMKATDSEEW 377
Query: 280 SIANHSCVSDKGNPTKF-------NMKIMGKKYI---FYCS--TLQIAGVQSVYVLAYDS 327
I + + +K +K N+K+ ++Y FY + L I GV V+
Sbjct: 378 VIKSGAQWLEKTYGSKRPHVVHAENVKLGDQRYYIDSFYLNLKRLPIVGV----VIIPRK 433
Query: 328 NGLGSLVSRNNKLSLMLL---VLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNAT 384
+G + R K ++L+ V +F G + I+++ +EM L A LI+Q++A
Sbjct: 434 FIMGKVDERAFKTLIILISASVCIFFIGCVC----ILILTNGVSKEMKLRAELIRQLDAR 489
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
+AE S K+ LA SH++R +AA+IGL+++ D + + IR CS LL
Sbjct: 490 RRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLSNEQYATVTQIRKCSTALL 549
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGS 504
+LN+++++SK+E+GK+ L E EF+L + LE +VDM+ I V+ VLD D
Sbjct: 550 RLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDM---P 606
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQD---IIASNRNVISKCL 561
VRGD +L QI NL+SNS+KFT+ GHI +R + + D + R +
Sbjct: 607 ALVRGDSARLVQIFANLISNSIKFTTTGHIILRGWCENINSLHDEMSVSVDRRKPWAPMK 666
Query: 562 SK-LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+K + RN L +N N + FEVDDTG GI K +S+FE F Q +
Sbjct: 667 TKQVQHRNH--------LQKSCKNANKMVLWFEVDDTGCGIDPSKWDSVFESFEQADPST 718
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
G GLGL IV+++V+ M GEI + K G R ++L+ PDT +++
Sbjct: 719 TRTHGGTGLGLCIVRNLVNKMGGEIKVVQK--NGLGTLMRLYLILST------PDTVDQN 770
Query: 681 PRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVK 740
+ F+ + G ++L + G R + +++ K I
Sbjct: 771 -----------IQPDFSKY--------GLVVMLSMYGSTARMITSKWLR-----KHGIAT 806
Query: 741 QEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDDYDN 800
E + EL ++ R D L + +S H+++ ++ + N
Sbjct: 807 VEASDWNELTQIIR------------------DLLETGSRDNSFDSQHNISDPLRAELSN 848
Query: 801 VSPHSKKASSKCLSSFTLV----VIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSV 856
+ F +V V+D T E + L F S K W+
Sbjct: 849 IVEIKNPV-------FVIVVDIGVLDLTTNIWKEQLNYLDRF-----SNKAKFAWLLKHD 896
Query: 857 IRNAHSREYRLLPICDHV--ISRPFHGSRLIEVLKLL----------------------P 892
N E R HV +++P + +++I++L+ +
Sbjct: 897 TSNTVKTELRR---KGHVMMVNKPLYKAKMIQILEAVIKNRKRGLCNDLRNRGNGSDESH 953
Query: 893 ECKGASQRNFPKLKMEASSQ-----ELQHCTDPNPLNK--LKSFGAEAGAS--ISSHCSS 943
+C F + SS+ ++ P+ L+ LK++ +A S S+ S
Sbjct: 954 DCLEIDPTQFDTCSSDDSSETSGEKQVDKSVKPSTLHSPVLKNYLIDATTSNDDSTSASM 1013
Query: 944 LQQVAAQSDGK---CSEKPLNGK--------KFLVVEDDAIVLKVTSAVLGKLGAKFEVC 992
Q+ + D K S L+GK +FL+ ED ++ +V + +L K+GA
Sbjct: 1014 TQKNPEEEDWKDRLYSGIALDGKNQKSLEGIRFLLAEDTPVLQRVATIMLEKMGATVTAV 1073
Query: 993 RNGKEAFDHV----------------------CKILSDLRKEGKALPYDYIMMDCEMPVM 1030
+G++A D + K+ + + PYD I+MDC+MP M
Sbjct: 1074 WDGQQAVDSLNYKSINAQAPTEEHKSFEEETANKVTTRETSLRNSSPYDLILMDCQMPKM 1133
Query: 1031 NGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
+G+EAT+ IR+ E ++HIPI+ALTAHAM+ +K ++ GMD +LTKP+ + ++ +
Sbjct: 1134 DGYEATKAIRRAEIGTELHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTIL 1193
Query: 1091 SI 1092
S+
Sbjct: 1194 SL 1195
>gi|18398532|ref|NP_565424.1| histidine kinase 1 [Arabidopsis thaliana]
gi|332278154|sp|Q9SXL4.2|AHK1_ARATH RecName: Full=Histidine kinase 1; AltName: Full=Arabidopsis histidine
kinase 1; Short=AtHK1; AltName: Full=Protein AUTHENTIC
HIS-KINASE 1
gi|330251597|gb|AEC06691.1| histidine kinase 1 [Arabidopsis thaliana]
Length = 1207
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 271/1082 (25%), Positives = 470/1082 (43%), Gaps = 191/1082 (17%)
Query: 112 PHLSLVSYLGLDGLSFSYFNDGDQTLAVYSNSSFAAN----WYTQPVNRDTGMLYGNAIA 167
P S Y+ D ++S G + ++ ++N S N WY Q ++ TG G +
Sbjct: 204 PASSSTFYIFSDLKNYSISGTGPEDVSGWNNKSIHGNMSAIWYQQQLDPVTGENLGKPLK 263
Query: 168 SIPIVSANASWFQEVINSTNGYSSLVTG-LNKEEGSIFLHTFAMDGTGFISLGFPAKVVI 226
P N + +V + + V+ ++ S L F +++ V
Sbjct: 264 IPPDDLINIAGISQVPDGEASWHVTVSKYMDSPLLSAALPVFDASNKSIVAV---VGVTT 320
Query: 227 DLFAA-------LDFHGGDLHLAAADGQVIIQTKLQNTEMVIYNSTLLLQKLNDDDSPEG 279
L++ ++ HGG ++L + +G ++ + ++ N++ Q + DS E
Sbjct: 321 ALYSVGQLMRDLVEVHGGHIYLTSQEGYLLATS---TDGPLLKNTSNGPQLMKATDSEEW 377
Query: 280 SIANHSCVSDKGNPTKF-------NMKIMGKKYI---FYCS--TLQIAGVQSVYVLAYDS 327
I + + +K +K N+K+ ++Y FY + L I GV V+
Sbjct: 378 VIKSGAQWLEKTYGSKRPHVVHAENVKLGDQRYYIDSFYLNLKRLPIVGV----VIIPRK 433
Query: 328 NGLGSLVSRNNKLSLMLL---VLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNAT 384
+G + R K ++L+ V +F G + I+++ +EM L A LI+Q++A
Sbjct: 434 FIMGKVDERAFKTLIILISASVCIFFIGCVC----ILILTNGVSKEMKLRAELIRQLDAR 489
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
+AE S K+ LA SH++R +AA+IGL+++ D + + IR CS LL
Sbjct: 490 RRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLSNEQYATVTQIRKCSTALL 549
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGS 504
+LN+++++SK+E+GK+ L E EF+L + LE +VDM+ I V+ VLD D
Sbjct: 550 RLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDM---P 606
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQD---IIASNRNVISKCL 561
VRGD +L QI NL+SNS+KFT+ GHI +R + + D + R +
Sbjct: 607 ALVRGDSARLVQIFANLISNSIKFTTTGHIILRGWCENINSLHDEMSVSVDRRKPWAPMK 666
Query: 562 SK-LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+K + RN L +N N + FEVDDTG GI K +S+FE F Q +
Sbjct: 667 TKQVQHRNH--------LQKSCKNANKMVLWFEVDDTGCGIDPSKWDSVFESFEQADPST 718
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
G GLGL IV+++V+ M GEI + K G R ++L+ PDT +++
Sbjct: 719 TRTHGGTGLGLCIVRNLVNKMGGEIKVVQK--NGLGTLMRLYLILST------PDTVDQN 770
Query: 681 PRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVK 740
+ F+ + G ++L + G R + +++ K I
Sbjct: 771 -----------IQPDFSKY--------GLVVMLSMYGSTARMITSKWLR-----KHGIAT 806
Query: 741 QEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDDYDN 800
E + EL ++ R D L + +S H+++ ++ + N
Sbjct: 807 VEASDWNELTQIIR------------------DLLETGSRDNSFDSQHNISDPLRAELSN 848
Query: 801 VSPHSKKASSKCLSSFTLV----VIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSV 856
+ F +V V+D T E + L F S K W+
Sbjct: 849 IVEIKNPV-------FVIVVDIGVLDLTTNIWKEQLNYLDRF-----SNKAKFAWLLKHD 896
Query: 857 IRNAHSREYRLLPICDHV--ISRPFHGSRLIEVLKLL----------------------P 892
N E R HV +++P + +++I++L+ +
Sbjct: 897 TSNTVKTELRR---KGHVMMVNKPLYKAKMIQILEAVIKNRKRGLCNDLRNRGNGSDESH 953
Query: 893 ECKGASQRNFPKLKMEASSQ-----ELQHCTDPNPLNK--LKSFGAEAGAS--ISSHCSS 943
+C F + SS+ ++ P+ L+ LK++ +A S S+ S
Sbjct: 954 DCLEIDPTQFDTCSSDDSSETSGEKQVDKSVKPSTLHSPVLKNYLIDATTSNDDSTSASM 1013
Query: 944 LQQVAAQSDGK---CSEKPLNGK--------KFLVVEDDAIVLKVTSAVLGKLGAKFEVC 992
Q+ + D K S L+GK + L+ ED ++ +V + +L K+GA
Sbjct: 1014 TQKNPEEEDWKDRLYSGIALDGKNQKSLEGIRILLAEDTPVLQRVATIMLEKMGATVTAV 1073
Query: 993 RNGKEAFDHV----------------------CKILSDLRKEGKALPYDYIMMDCEMPVM 1030
+G++A D + K+ + + PYD I+MDC+MP M
Sbjct: 1074 WDGQQAVDSLNYKSINAQAPTEEHKSFEEETANKVTTRETSLRNSSPYDLILMDCQMPKM 1133
Query: 1031 NGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
+G+EAT+ IR+ E ++HIPI+ALTAHAM+ +K ++ GMD +LTKP+ + ++ +
Sbjct: 1134 DGYEATKAIRRAEIGTELHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTIL 1193
Query: 1091 SI 1092
S+
Sbjct: 1194 SL 1195
>gi|224071327|ref|XP_002303406.1| histidine kinase osmosensor protein [Populus trichocarpa]
gi|222840838|gb|EEE78385.1| histidine kinase osmosensor protein [Populus trichocarpa]
Length = 1149
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 213/774 (27%), Positives = 365/774 (47%), Gaps = 115/774 (14%)
Query: 358 LFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVE 417
+FI+++ +EM L A LI ++A +AE + K+ LA SH++R +AA+IGL++
Sbjct: 447 VFILILTNGVSKEMKLRAELISHLDARRRAEASNNYKSQFLANMSHELRTPMAAVIGLLD 506
Query: 418 LCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEV 477
+ D + N+ IR CS LL +LN+++++SK+E+GK+ L + EF+L + LE +
Sbjct: 507 ILICDDCLTNEQYANVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGL 566
Query: 478 VDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVR 537
+DM+ I V+ VLD D VRGD ++ QI NL+SNS+KFT+ GHI +R
Sbjct: 567 IDMFSVQCINHNVEAVLDLSDEM---PKLVRGDSARVVQIFANLISNSIKFTTTGHIILR 623
Query: 538 AAVK--KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVD 595
+ ++ ++ + +C K R + L + N + FE+D
Sbjct: 624 GWCENLNNTYNDTQFHLDQKKM-RCAIKPKLRQHG-----NHLKKACKKENKMILWFEID 677
Query: 596 DTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGER 655
DTG GI K S+FE F Q + G GLGL IV+++V+ M GEI + K
Sbjct: 678 DTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKNGP-- 735
Query: 656 GVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFI 715
G R +LL + TD D D+ S + +++ +
Sbjct: 736 GTLMRLYLLL-------KTPTDGADLHCQVDF-----------------SSHNAVVLVAL 771
Query: 716 AGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSL 775
G R ++ +++ I +T + + EL +V RK+ +A + E+
Sbjct: 772 NGSMGRVIMSQWLR---EIGLTTLGVSE--WNELTRVLRKL-----FHARRRENGFDVQC 821
Query: 776 TMSASSSSDTGHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVV----IDATAGSVSEL 831
+M+ S+ L+I+D D F +VV +D + E
Sbjct: 822 SMNEPLKSE------VLNIEDMKD---------------LFIIVVDVGLLDLSTDIWKEQ 860
Query: 832 VKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR----LLPICDHVISRPFHGSRLIEV 887
+ L NF S K W+ N NA E R LL ++++P + +++I +
Sbjct: 861 INFLDNF-----SGKAKFAWMLNHDTSNAIKMELRKKGHLL-----MVNKPLYKAKMIHI 910
Query: 888 LKLLPECKG--ASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGAS---ISSHCS 942
L+ + + K +++ + A ++ C + + + + E+ + IS H
Sbjct: 911 LETVIKEKDLEYQKKSSNAARAMAKDGDMHECLEIDSTHFDTTSSEESDTAEMEISKHDE 970
Query: 943 SLQQVAAQSDGKCS--------EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRN 994
+ ++ + S +K L+G + L+ ED ++ +V + +L K+GAK +
Sbjct: 971 RNSETSSHKEQGNSYSNKAGNQQKALDGLRILLAEDTPVLQRVATIMLEKMGAKVITVGD 1030
Query: 995 GKEAFDHVCKILS--DLRKEG--------------KALPYDYIMMDCEMPVMNGWEATRL 1038
G +A + + LS D R+E ++ YD I+MDC+MP M+G+EAT+
Sbjct: 1031 GLQAVEALNCSLSEKDCRRESPGNDGNTGLQTDIQESQSYDLILMDCQMPKMDGYEATKA 1090
Query: 1039 IRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
IRK E D+HIPI+ALTAHAM+ +K ++ GMD +LTKP+ ++ + S+
Sbjct: 1091 IRKSETGTDLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSL 1144
>gi|357442267|ref|XP_003591411.1| Hybrid signal transduction histidine kinase I [Medicago truncatula]
gi|355480459|gb|AES61662.1| Hybrid signal transduction histidine kinase I [Medicago truncatula]
Length = 486
Score = 234 bits (596), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 256/481 (53%), Gaps = 47/481 (9%)
Query: 638 VHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFA 697
V LM G+I I DKE G+RG CF+FNVLLT +CE E + E T D QT L +
Sbjct: 27 VRLMHGDIGIVDKEVGKRGTCFKFNVLLT-LCENET--VNYEYGSTAGDKSQT-LEKKLT 82
Query: 698 S----------------FWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQ 741
+ + E S +IL+I EERRR + +IE SL IKV +VK
Sbjct: 83 IRTASSGSSICSLSPKLHVSPSQRPEPSHVILYITDEERRRTSQLFIE-SLGIKVKVVKS 141
Query: 742 EKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDDYDNV 801
+L L+K+K++ + S ++ +S S + V D +
Sbjct: 142 RNHLVHTLKKIKKEKG----DHLSDQSSPESSEMSSRCTSYSSSCSRRVPFKAMDHGNEY 197
Query: 802 SPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAH 861
K ++ SF L++IDA AG S+L KI++NFK+D+ + S KVVW++
Sbjct: 198 LSSMFKKNNGAAPSFVLIIIDANAGPFSKLCKIVSNFKKDLLNPS-KVVWLEKPF---ES 253
Query: 862 SREYRLLPICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQH----C 917
S +Y+ + D+VIS+PFHGSRL +V+KLLPE G+ N K + E SQE + C
Sbjct: 254 SVDYQAIDQDDNVISKPFHGSRLFQVIKLLPEFGGSWISNSSKPRNELRSQEPTNDESVC 313
Query: 918 TDPNPLNK--LKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVL 975
K KS+ + G S H +++ +S + +PL+GKKFLVV+D ++
Sbjct: 314 LSVGQCWKGTQKSY-VKMGRKGSVHQGEIEESGGES---SNPEPLSGKKFLVVDDSPMLR 369
Query: 976 KVTSAVLGKLG-AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWE 1034
K+ A L LG + C NG+EA V + L K+ PYDYI+MDC+MPV +G+E
Sbjct: 370 KICMATLRSLGVTTIDQCENGEEA---VRTVQEGLTKDFTNPPYDYILMDCQMPVKDGFE 426
Query: 1035 ATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094
ATR IR+ E+QY +HI IIAL+A + + GMDFH+TKP++K+ LL + I+
Sbjct: 427 ATREIREMEKQYGLHISIIALSAE----IDKLTTETGMDFHITKPIKKEHLLKAITYIEN 482
Query: 1095 T 1095
+
Sbjct: 483 S 483
>gi|302813527|ref|XP_002988449.1| hypothetical protein SELMODRAFT_128087 [Selaginella moellendorffii]
gi|300143851|gb|EFJ10539.1| hypothetical protein SELMODRAFT_128087 [Selaginella moellendorffii]
Length = 325
Score = 196 bits (497), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 128/352 (36%), Positives = 200/352 (56%), Gaps = 36/352 (10%)
Query: 402 SHDVRASLAAIIGLVELC--HEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAG 459
SHD+R LAAIIGL++LC H++ +L N+ ++TC+ LLGILNS+++MSK E G
Sbjct: 2 SHDLRTPLAAIIGLIDLCLSHKE-RLSVELESNMLQMKTCATTLLGILNSILDMSKAEVG 60
Query: 460 KMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILC 519
K+EL +F+L ++LEE VD++ VG KKG++VVL+ D S+ VRGD ++KQ+LC
Sbjct: 61 KLELEVADFDLIKVLEEAVDIFAVVGAKKGIEVVLELPDDSIELVRWVRGDAGRVKQLLC 120
Query: 520 NLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF---FRNKEGFDDLD 576
+L+SN +KFTS G++ +R A K+S Q +AS + K F R +
Sbjct: 121 DLLSNGVKFTSRGYVILR-AFPKQSSSQSWVASASRRSGRWFQKTFVSCLRTSSSSSNRS 179
Query: 577 A---LHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
+ S + + L+FEFEVDDTG+GIP+ ++ ++F FVQ G GLGL I
Sbjct: 180 SQIPARSQGSSSDTLEFEFEVDDTGQGIPQSRREAVFRNFVQGSSKVHCTYGGTGLGLAI 239
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLH 693
V+S+VH+M G+I +A+K+ G F+FN+L ++ E R GL
Sbjct: 240 VRSLVHMMGGQIKVANKDG--PGTLFKFNLLF------QKAQLLENAARVD------GL- 284
Query: 694 QHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNL 745
+ + Q++L +AGE R+ + +++N +V V Q +++
Sbjct: 285 -----------EGQNLQVVLAMAGELGRKFVSLWMQNKGAAQVCEVSQWQSI 325
>gi|302796237|ref|XP_002979881.1| hypothetical protein SELMODRAFT_111212 [Selaginella moellendorffii]
gi|300152641|gb|EFJ19283.1| hypothetical protein SELMODRAFT_111212 [Selaginella moellendorffii]
Length = 325
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 196/351 (55%), Gaps = 34/351 (9%)
Query: 402 SHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGK 460
SHD+R LAAIIGL++LC +L N+ ++TC+ LLGILNS+++MSK E GK
Sbjct: 2 SHDLRTPLAAIIGLIDLCLSYKERLSVELESNMLQMKTCATTLLGILNSILDMSKAEVGK 61
Query: 461 MELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCN 520
+EL +F+L ++LEE VD++ VG KKG++VVL+ D S+ VRGD ++KQ+LC+
Sbjct: 62 LELEVADFDLIKVLEEAVDIFAVVGAKKGIEVVLELPDDSIELVRWVRGDAGRVKQLLCD 121
Query: 521 LVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF---FRNKEGFDDLDA 577
L+SN +KFTS G++ +R A K+S Q +AS + K F R +
Sbjct: 122 LLSNGVKFTSRGYVILR-AFPKQSSSQSWVASASRRSGRWFQKTFVSCLRTSGSSSSRSS 180
Query: 578 ---LHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIV 634
S + + L+FEFEVDDTG+GIP+ ++ ++F FVQ G GLGL IV
Sbjct: 181 QIPARSQGSSSDTLEFEFEVDDTGQGIPQSRREAVFRNFVQGSSKVHCTYGGTGLGLAIV 240
Query: 635 QSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQ 694
+S+VH+M G+I +A+K+ G F+FN+L ++ E R GL
Sbjct: 241 RSLVHMMGGQIKVANKDG--PGTLFKFNLLF------QKAQLLENAARVD------GL-- 284
Query: 695 HFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNL 745
+ + Q++L +AGE R+ + +++N +V V Q +++
Sbjct: 285 ----------EGQNLQVVLAMAGELGRKFVSLWMQNKGAAQVCEVSQWQSI 325
>gi|255576483|ref|XP_002529133.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223531412|gb|EEF33246.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 354
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/320 (37%), Positives = 173/320 (54%), Gaps = 30/320 (9%)
Query: 796 DDYDNVSPHSKKASS-KCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWID- 853
D + SP + +S K F L+VID G EL + + ++ + CKV+W+D
Sbjct: 34 DGTERKSPSYRSSSILKGAPGFILLVIDTGTGPFEELYEAVTEIRKSLHRACCKVIWLDK 93
Query: 854 ---NSVIRNAHSREYRLLPICDHVISRPFHGSRLIEVLKLLPECKGASQRNFP--KLKME 908
+S+IR E + D ++ +PFHGSRL V++ LPE G + K E
Sbjct: 94 PTSHSIIRRG--LEDDTIGSDDEILLKPFHGSRLYHVMRFLPELGGTLHHGVSSSEPKKE 151
Query: 909 ASSQELQHCTDP----NPLNKLKSFGAEAGASISSHCSSLQQVAAQ--------SDGKCS 956
++ Q ++ DP + ++ + G + +S H ++ + A + D +CS
Sbjct: 152 STVQSIKTIKDPGSSSSAIHLQRDLGLKGTSSREQHKTTREYSARRYSVGSSEVHDRECS 211
Query: 957 ----EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAK-FEVCRNGKEAFDHVCKILSDLRK 1011
EKPL+G +FLV +D+ + V A L LGA ++C +G EA V L + +K
Sbjct: 212 NKSNEKPLSGMRFLVADDNQALQMVAKANLSNLGASSVKLCPSGAEALQLVRFGLQEQKK 271
Query: 1012 EGKAL--PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVD 1069
G + PYDYI+MDCEMP+MNG+EATRLIR EE Y +HIPIIALTAH G +K +
Sbjct: 272 NGGYIVAPYDYILMDCEMPIMNGYEATRLIRIEERSYGIHIPIIALTAHDDKGEETK--E 329
Query: 1070 AGMDFHLTKPLQKDKLLDVV 1089
AGMD HL KPL +DKLL +
Sbjct: 330 AGMDDHLCKPLNRDKLLKAI 349
>gi|168015329|ref|XP_001760203.1| SNLB osmosensory protein [Physcomitrella patens subsp. patens]
gi|162688583|gb|EDQ74959.1| SNLB osmosensory protein [Physcomitrella patens subsp. patens]
Length = 1191
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 162/567 (28%), Positives = 252/567 (44%), Gaps = 76/567 (13%)
Query: 169 IPIVSANASWFQEVINSTNGYSS--------------------LVTGLNKEEGSIFLHTF 208
IP+ + N +W++E IN G +S V L E S L
Sbjct: 220 IPLENGNITWYKEPINPYTGKASSPINITPINITSYDLSKNIDYVLALKSTEVSWRLVVT 279
Query: 209 AMDGTGFISLGFPAK--------VVIDLFAALDF-----------HGGDLHLAAADGQVI 249
D T +S P + V + AAL H G L+L ADGQ++
Sbjct: 280 ESDDTPLLSSATPVRYRDSGIVVAVTGVTAALSSISQFLRELTSSHSGYLYLTTADGQLL 339
Query: 250 IQTKLQNTEMVIYNS---TLLLQKLNDDDSPEGSIANHSCVSDKGNPTKF-------NMK 299
+ N ++ + TL+L N+ P + G N+
Sbjct: 340 ATST--NASLIDSSGPRRTLVLA--NESSDPVIKAGAQWLYARHGFEGLVKTVVHAENVV 395
Query: 300 IMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLF 359
+ GK+Y +L ++G+Q V V+ + V R+ + +L +L+ + + F
Sbjct: 396 LEGKRYYIDTFSLSLSGLQMVGVIIIPRTYVMGEVDRSGRATLAILIAISCCILFVGCFF 455
Query: 360 IILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC 419
II EM L A LI ++A +AE S K+ LA SH++R +AA+IGL+++
Sbjct: 456 IIFFTSGVSTEMKLRAELINHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDIL 515
Query: 420 HEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVD 479
D ++ + IR CS LL +LN+++++SK+E+GK+ L +F+L + LE +VD
Sbjct: 516 LCDDCLSSEQINMVSQIRRCSTALLRLLNNILDISKVESGKLVLEAADFDLNRELEGLVD 575
Query: 480 MYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAA 539
M+ + +++VLD D VRGD ++ QI NL++NS+KFTS GH+ +R
Sbjct: 576 MFSVQCVDHDIEIVLDLADDM---PRMVRGDSARIVQIFANLIANSVKFTSSGHVILRGW 632
Query: 540 VKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALH--SVERN--PNLLQFEFEVD 595
+ + S LF N ++ H V N P+ FEV+
Sbjct: 633 CSSPNMSATAMRSG---------LLFGMNDSTWNQNRLSHEGGVTNNYEPSQFLMWFEVE 683
Query: 596 DTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGER 655
DTG GI K ++FE FVQ + G GLGL IV+S+V M G+I I KE
Sbjct: 684 DTGCGIDSSKWEAVFESFVQADPSTTRTYGGTGLGLCIVRSLVRKMGGDIKIVKKE--GP 741
Query: 656 GVCFRFNVLLTAVCERERPDTDEEDPR 682
G RF +L + D++ E PR
Sbjct: 742 GTLLRFYLLFN-----QPVDSEPETPR 763
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 80/138 (57%), Gaps = 8/138 (5%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLR---KEGKAL 1016
L G + L+ ED ++ KV + +L K+GA +G +A + + + + E
Sbjct: 1045 LAGIRILLAEDTPVLAKVATIMLEKMGACVVAVGDGLQAVETIGRSRGEHNVGDTEESTT 1104
Query: 1017 P-----YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAG 1071
P +D ++MDC+MP M+G+EAT+ IRK EE + H+P++ALTAHAM+ +K + G
Sbjct: 1105 PAEIDGFDLVLMDCQMPRMDGYEATKAIRKAEEGKNWHLPVVALTAHAMSSDEAKCLQVG 1164
Query: 1072 MDFHLTKPLQKDKLLDVV 1089
MD +LTKP+ ++ +
Sbjct: 1165 MDAYLTKPIDSKLMVSTI 1182
>gi|168003958|ref|XP_001754679.1| SNLA osmosensory protein [Physcomitrella patens subsp. patens]
gi|162694300|gb|EDQ80649.1| SNLA osmosensory protein [Physcomitrella patens subsp. patens]
Length = 1189
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 150/538 (27%), Positives = 249/538 (46%), Gaps = 75/538 (13%)
Query: 170 PIVSANASWFQEVINSTNGYSSL----------------VTGLNKEEGSIFLHTFAMDGT 213
P+ ++N +W+ E +NS G SS V L E + + + T
Sbjct: 221 PVNTSNITWYTETVNSYTGGSSSPPNVTQSYDLSKSIDDVLFLRNTEVTWRVTVSEFEDT 280
Query: 214 GFISLGFPAK--------VVIDLFAALD-----------FHGGDLHLAAADGQVIIQTKL 254
+S P + V + AL H G L+L + GQ++ +
Sbjct: 281 PLLSSAAPIRHQGSDMIVAVTGITTALSSISQFLRELTSTHSGYLYLTTSKGQLLAAST- 339
Query: 255 QNTEMVIYNS---TLLL-------------QKLNDDDSPEGSIANHSCVSDKGNPTKFNM 298
N+ M+ + TL++ Q LN+ EG + + V + N+
Sbjct: 340 -NSSMINTSGPIRTLVMANESSDAVIKAGAQWLNERYGFEGLV--QTVVHAE------NV 390
Query: 299 KIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGL 358
+ GK+Y L + ++ V V+ + V R K +L +L+ + ++ +
Sbjct: 391 VLEGKRYYIDTFCLSLPRLKMVGVIIIPRTYVMGEVDRRGKATLAILIAISSCILLVGCV 450
Query: 359 FIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVEL 418
FII EM L A LIK ++A +AE S K+ LA SH++R +AA+IGL+++
Sbjct: 451 FIIFFTSGVSTEMKLRAELIKHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDI 510
Query: 419 CHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVV 478
D ++ + IR CS LL +LN+++++SK+E+GK+ L +F+L + LE +V
Sbjct: 511 LLSDDCLSSEQVNMVSQIRRCSTALLRLLNNILDISKVESGKLVLEAADFDLNRELEGLV 570
Query: 479 DMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRA 538
DM+ + +++VLD D VRGD + QI NL++NS+KFTS GH+ +R
Sbjct: 571 DMFSVQCVDHDIEIVLDLADDM---PRMVRGDSARTVQIFANLIANSVKFTSSGHVILRG 627
Query: 539 AVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQF--EFEVDD 596
+ + + R+ + + ++ N +G + N +L +F FEV+D
Sbjct: 628 WSGSTNMSANAM---RSGLLFGTNDMWEPNWQG-----DVTGGTNNQDLGKFLLWFEVED 679
Query: 597 TGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE-PG 653
TG GI K ++F+ FVQ + G GLGL IV+S+V M G+I I KE PG
Sbjct: 680 TGCGIDSSKWEAVFDSFVQADPSTTRTYGGTGLGLCIVRSLVRKMGGDIKIVKKEGPG 737
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 84/138 (60%), Gaps = 8/138 (5%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHV--CKILSDLRKEGKALP 1017
L G + L+ ED ++ KV + +L K+GA+ +G +A + + + ++ + G++
Sbjct: 1043 LAGIRILLAEDTPVLAKVATIMLEKMGARVVAVGDGLQAVETIGRSREAQNVAETGESTT 1102
Query: 1018 ------YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAG 1071
+D ++MDC+MP M+G+EAT+ IRK EE D H+P++ALTAHAM+ +K + G
Sbjct: 1103 PPTVDKFDLVLMDCQMPRMDGYEATKAIRKAEEGKDWHLPVVALTAHAMSSDEAKCLQVG 1162
Query: 1072 MDFHLTKPLQKDKLLDVV 1089
MD +LTKP+ ++ +
Sbjct: 1163 MDAYLTKPIDSKLMVSTI 1180
>gi|449495060|ref|XP_004159723.1| PREDICTED: histidine kinase 1-like [Cucumis sativus]
Length = 1222
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 132/453 (29%), Positives = 223/453 (49%), Gaps = 37/453 (8%)
Query: 232 LDFHGGDLHLAAADGQVIIQTK----LQNTEM-------------VIYNSTLLLQKLNDD 274
++FH G ++L + +G ++ + L+NT VI LQK +
Sbjct: 339 VEFHSGHIYLTSQEGYLLATSANAPLLRNTSRGPKLTMAVDSQDDVIRLGAEWLQKTYGN 398
Query: 275 DSPEGSIANHSCVSDKGNPTKFNMKIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLV 334
+ P G + N+K+ ++Y L + + V V+ + V
Sbjct: 399 NFPPGHEVHEE-----------NVKLGDRQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKV 447
Query: 335 SRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNK 394
+L++L+ + ++ L I+++ K +EM L A LI ++A +AE S K
Sbjct: 448 DERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYK 507
Query: 395 TFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMS 454
+ LA SH++R +AA+IGL+++ D + + IR CS LL +LN+++++S
Sbjct: 508 SQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLS 567
Query: 455 KIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKL 514
K+E+GK+ L + EF+L + LE +VDM+ I V+ VLD D VRGD ++
Sbjct: 568 KVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDM---PKFVRGDSGRV 624
Query: 515 KQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDD 574
QI NL+SNS+KFT+ GHI +R + + +++ + I + S+ R K
Sbjct: 625 VQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEM---GKFCIDQKKSRFPNRTKMKQHG 681
Query: 575 LDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIV 634
A ++ +++ N + FE+DDTG GI K S+FE F Q + G GLGL IV
Sbjct: 682 EHAKNAFKKD-NKMTLWFELDDTGCGIDSSKWESVFESFEQADPSTTRTHGGTGLGLCIV 740
Query: 635 QSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
+++V+ M GEI + K G RF ++L+
Sbjct: 741 RTLVNKMGGEIKVVKKNGP--GTLMRFYLVLST 771
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 3/151 (1%)
Query: 946 QVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKI 1005
Q + S+ +K L G + L+ ED ++ +VT+ +L ++GAK +G +A + + +
Sbjct: 1070 QGESHSNNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGAKVIAFGDGLQAVEALTAM 1129
Query: 1006 LSDLRKEGKALP--YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGV 1063
LS ++ + P YD I+MDC+MP M+G+EAT+ IRK E +HIPI+ALTAHAM+
Sbjct: 1130 LS-AEEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLEVGTSLHIPIVALTAHAMSSD 1188
Query: 1064 ASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094
+K ++ GMD +LTKP+ ++ + S+ +
Sbjct: 1189 EAKCLEVGMDAYLTKPIDYKLMVSTILSLTQ 1219
>gi|449456825|ref|XP_004146149.1| PREDICTED: histidine kinase 1-like [Cucumis sativus]
Length = 1221
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 132/453 (29%), Positives = 223/453 (49%), Gaps = 37/453 (8%)
Query: 232 LDFHGGDLHLAAADGQVIIQTK----LQNTEM-------------VIYNSTLLLQKLNDD 274
++FH G ++L + +G ++ + L+NT VI LQK +
Sbjct: 338 VEFHSGHIYLTSQEGYLLATSANAPLLRNTSRGPKLTMAVDSQDDVIRLGAEWLQKTYGN 397
Query: 275 DSPEGSIANHSCVSDKGNPTKFNMKIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLV 334
+ P G + N+K+ ++Y L + + V V+ + V
Sbjct: 398 NFPPGHEVHEE-----------NVKLGDRQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKV 446
Query: 335 SRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNK 394
+L++L+ + ++ L I+++ K +EM L A LI ++A +AE S K
Sbjct: 447 DERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYK 506
Query: 395 TFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMS 454
+ LA SH++R +AA+IGL+++ D + + IR CS LL +LN+++++S
Sbjct: 507 SQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLS 566
Query: 455 KIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKL 514
K+E+GK+ L + EF+L + LE +VDM+ I V+ VLD D VRGD ++
Sbjct: 567 KVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDM---PKFVRGDSGRV 623
Query: 515 KQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDD 574
QI NL+SNS+KFT+ GHI +R + + +++ + I + S+ R K
Sbjct: 624 VQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEM---GKFCIDQKKSRFPNRTKMKQHG 680
Query: 575 LDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIV 634
A ++ +++ N + FE+DDTG GI K S+FE F Q + G GLGL IV
Sbjct: 681 EHAKNAFKKD-NKMTLWFELDDTGCGIDSSKWESVFESFEQADPSTTRTHGGTGLGLCIV 739
Query: 635 QSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
+++V+ M GEI + K G RF ++L+
Sbjct: 740 RTLVNKMGGEIKVVKKNGP--GTLMRFYLVLST 770
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 3/151 (1%)
Query: 946 QVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKI 1005
Q + S+ +K L G + L+ ED ++ +VT+ +L ++GAK +G +A + + +
Sbjct: 1069 QGESHSNNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGAKVIAFGDGLQAVEALTAM 1128
Query: 1006 LSDLRKEGKALP--YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGV 1063
LS ++ + P YD I+MDC+MP M+G+EAT+ IRK E +HIPI+ALTAHAM+
Sbjct: 1129 LS-AEEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLEVGTSLHIPIVALTAHAMSSD 1187
Query: 1064 ASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094
+K ++ GMD +LTKP+ ++ + S+ +
Sbjct: 1188 EAKCLEVGMDAYLTKPIDYKLMVSTILSLTQ 1218
>gi|60545052|gb|AAQ10680.2| cold inducible histidine kinase 1 [Catharanthus roseus]
Length = 1205
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/308 (36%), Positives = 167/308 (54%), Gaps = 13/308 (4%)
Query: 360 IILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC 419
I ++ REM L A I ++A +AE S K+ LA SH++R +AA+IGL+++
Sbjct: 458 IFILTNGVSREMKLRAEFISHLDARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDIL 517
Query: 420 HEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVD 479
D + N+ IR CS LL +LN+++++SK+E+GK+ L E EF+L + LE +VD
Sbjct: 518 MSDDCLTNEQFANVTQIRKCSTALLRLLNNILDLSKVESGKLVLEETEFDLGRELEGLVD 577
Query: 480 MYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAA 539
M+ I V+ +LD + VRGD ++ QI NL+SNSMKFT+ GHI VR
Sbjct: 578 MFSVQCINHNVETILDLSEDM---PKFVRGDSARVVQIFANLISNSMKFTTSGHIIVRGW 634
Query: 540 VKKKSFKQDIIASNRNVISKC--LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDT 597
+ ++ I +S+ N +C L +L ++++ D R N + FEV+DT
Sbjct: 635 CENQNPSISIRSSSINQ-KECWRLQRLKLKHQDSND-----QKSFRKENKVVLWFEVEDT 688
Query: 598 GKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGV 657
G GI K S+FE F Q + G GLGL IV+++V+ M GEI + K G
Sbjct: 689 GCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKNGA--GT 746
Query: 658 CFRFNVLL 665
R +LL
Sbjct: 747 LMRLCLLL 754
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 121/229 (52%), Gaps = 29/229 (12%)
Query: 881 GSRLIEVLKLLPECKGASQRN----FPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGAS 936
G + E + C+ + N FP+ +E +S ++++ P + K+ +S
Sbjct: 982 GEKTYEKFHIASACQNRTLNNYFVEFPQSNLEENSFDMRNRGVKGPRERHKN------SS 1035
Query: 937 ISSHCSSLQQVAAQSDGKC--SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRN 994
++S + QS+G +K L+G + L+ ED ++ +V + +L KLGAK +
Sbjct: 1036 VNS-----KDRDTQSNGTLWNEQKSLDGLRILLAEDTPVLQRVATIMLEKLGAKVVAVGD 1090
Query: 995 GKEAFDHVCKILSDLRK-----------EGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043
G +A D + + + D + +LPY I+MDC+MP M+G+ AT+ IRK E
Sbjct: 1091 GLQAVDAL-RFMFDSNQSNLESPEEDVINSTSLPYHLILMDCQMPKMDGYAATKAIRKSE 1149
Query: 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
+HIPI+ALTAHAM+ +K ++ GMD +LTKP+ + ++ + S+
Sbjct: 1150 MGTGLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTILSL 1198
>gi|357483831|ref|XP_003612202.1| Histidine kinase osmosensor protein [Medicago truncatula]
gi|355513537|gb|AES95160.1| Histidine kinase osmosensor protein [Medicago truncatula]
Length = 1218
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 159/579 (27%), Positives = 274/579 (47%), Gaps = 72/579 (12%)
Query: 134 DQTLAVYSNSSFAANWYTQPVNRDTGMLYGNAIASIP-----------IVSANASWFQEV 182
D+TL + +F+A WY +P++ TG G A+ P + A+W V
Sbjct: 241 DKTL----HGNFSAIWYREPLDPVTGEKIGKAMKIAPEDLINIAGLSQVPDGVATWHVAV 296
Query: 183 INSTNGYSSLVTGLNKEEGSIFLHTFAMDG--TGFISLGFPAKVVIDLFAALDFHGGDLH 240
T+ S L++ S A+ G T F S+G + ++++ H G ++
Sbjct: 297 SKFTD--SPLLSAALPVWDSSNKSIMAVVGVTTAFYSVGQLMRELVEM------HSGHMY 348
Query: 241 LAAADGQVIIQTK----LQNT--------------EMVIYNSTLLLQKLNDDDSPEGSIA 282
L + G ++ + L N+ + +I LQ+ + P +
Sbjct: 349 LTSQQGYLLATSTSAPLLTNSTKPPPKLKMAVDCEDEIIRLGAEWLQRTYGNHFPNSTHE 408
Query: 283 NHSCVSDKGNPTKF------NMK-----IMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLG 331
H + GN + N+K I+ K+ + +L I V + + +G
Sbjct: 409 VHVENAKLGNQQYYIDSFYLNLKRLPLVIIIKRLVLLTYSLVITKVGVIIIPR--KYIMG 466
Query: 332 SLVSRNNKLSLMLL---VLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAE 388
+ R+ K ++L+ + +F+ G + I+++ +EM L A LI Q+ A +AE
Sbjct: 467 QVDERSFKTLVILISASLCIFVIGCVC----ILILTNGVSKEMNLRAELISQLEARRKAE 522
Query: 389 RKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILN 448
S K+ LA SH++R +AA+IGL+++ D + + IR CS LL +LN
Sbjct: 523 ASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLN 582
Query: 449 SVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVR 508
+++++SK+E+GK+ L + EF+L + LE +VDM+ I V+ VLD D VR
Sbjct: 583 NILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDM---PKLVR 639
Query: 509 GDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRN 568
GD ++ Q+ NL++NS+KFT+ GH+ +R + + D S + + S+ ++
Sbjct: 640 GDSGRVVQVFANLINNSIKFTTSGHVILRGWCEYPNSCND---SPNFYLDQKKSRNLHKS 696
Query: 569 KEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLG 628
KE + A R+ ++ + FEV+DTG GI K +S+FE F Q + G G
Sbjct: 697 KEKPNASHAKRISMRDNKVILW-FEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTG 755
Query: 629 LGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
LGL IV+++V+ M GEI + KE +G R +LL+A
Sbjct: 756 LGLCIVRNLVNKMGGEIKVTKKEG--QGTLMRLCLLLSA 792
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 81/140 (57%), Gaps = 16/140 (11%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILS--DLRKEG- 1013
+K L G + L+ ED ++ +V + +L K+GA +G++A D + + S D R+E
Sbjct: 1062 KKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAVGDGQQAVDALNYMASAEDCRRESL 1121
Query: 1014 -------------KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAM 1060
YD I+MDC+MP M+G+EAT+ IRK EE HIPI+ALTAHAM
Sbjct: 1122 QKDRNTRSQTEILTCHQYDLILMDCQMPKMDGYEATKEIRKSEEGTGKHIPIVALTAHAM 1181
Query: 1061 AGVASKIVDAGMDFHLTKPL 1080
+ +K + GMD +LTKP+
Sbjct: 1182 SCDEAKCLKVGMDAYLTKPI 1201
>gi|302793927|ref|XP_002978728.1| hypothetical protein SELMODRAFT_109471 [Selaginella moellendorffii]
gi|300153537|gb|EFJ20175.1| hypothetical protein SELMODRAFT_109471 [Selaginella moellendorffii]
Length = 1086
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 188/375 (50%), Gaps = 36/375 (9%)
Query: 302 GKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFII 361
GKK+ + G+ + V+ + + V + +L++LV + I+ ++ L I+
Sbjct: 363 GKKFYIDSFYWNLTGLPLIGVILLPRSYVLGDVDDRGRTTLIILVSVAISILVVGCLLIL 422
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
+ EM L + LIK ++A ++AE S K+ LA SH++R +AA+IGL+++
Sbjct: 423 IFTSGVSTEMKLRSELIKHLHARQRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLT 482
Query: 422 DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481
DA + + IR CS LL +LN+++++SK+E+GK+ L + +FN+ LE V+DM+
Sbjct: 483 DACLTVEQIAIVSQIRHCSTALLRLLNNILDLSKVESGKLVLEKVDFNIRHELEAVIDMF 542
Query: 482 YHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541
+ +D+VLD D VRGD + QI NL+ NS+KFTS G+I++R +
Sbjct: 543 SVQCVD--IDIVLDLADNV---PQMVRGDLTRTVQIFANLIGNSIKFTSSGYITIRGWAE 597
Query: 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTG-KG 600
+ + + ++ I K L FEVDD+G G
Sbjct: 598 PFVSRYEPLEASGGHIEKFL----------------------------LWFEVDDSGCAG 629
Query: 601 IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
I K ++F+ FVQ + G GLGL IV+S+V M GEI + KE E G R
Sbjct: 630 IDPSKWETVFDSFVQADTSTSRTHGGTGLGLCIVRSLVSKMGGEIKVVKKE--EPGTLMR 687
Query: 661 FNVLLTAVCERERPD 675
F ++ + E PD
Sbjct: 688 FYLMYDSPFEVSTPD 702
Score = 103 bits (257), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 89/168 (52%), Gaps = 10/168 (5%)
Query: 916 HCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVL 975
HC D F + G+ SH + + +GK L G L+ ED ++
Sbjct: 907 HCGDDE-----DGFSSTRGSQDISHRAMELKEYTDEEGKEPRASLTGIHILLAEDTPVIQ 961
Query: 976 KVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSD---LRKEGKALPYDYIMMDCEMPVMNG 1032
KV +L KLGA +G+ A + L D + +E K P+D I+MDC+MP M+G
Sbjct: 962 KVAVVLLKKLGATVVAVADGQAAVEAWKGSLKDHAVVDEERK--PFDLILMDCQMPRMDG 1019
Query: 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ ATR IRK EE H+PI+ALTAHAM+ + ++ GMD +LTKP+
Sbjct: 1020 YGATREIRKAEEGSGSHVPIVALTAHAMSSDEERCLEVGMDAYLTKPI 1067
>gi|302787437|ref|XP_002975488.1| hypothetical protein SELMODRAFT_104037 [Selaginella moellendorffii]
gi|300156489|gb|EFJ23117.1| hypothetical protein SELMODRAFT_104037 [Selaginella moellendorffii]
Length = 1086
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 188/375 (50%), Gaps = 36/375 (9%)
Query: 302 GKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFII 361
GKK+ + G+ + V+ + + V + +L++LV + I+ ++ L I+
Sbjct: 363 GKKFYIDSFYWNLTGLPLIGVILLPRSYVLGDVDDRGRTTLIILVSVAISILVVGCLLIL 422
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
+ EM L + LIK ++A ++AE S K+ LA SH++R +AA+IGL+++
Sbjct: 423 IFTSGVSTEMKLRSELIKHLHARQRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLT 482
Query: 422 DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481
DA + + IR CS LL +LN+++++SK+E+GK+ L + +FN+ LE V+DM+
Sbjct: 483 DACLTVEQIAIVSQIRHCSTALLRLLNNILDLSKVESGKLVLEKVDFNIRHELEAVIDMF 542
Query: 482 YHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541
+ +D+VLD D VRGD + QI NL+ NS+KFTS G+I++R +
Sbjct: 543 SVQCVD--IDIVLDLADNV---PQMVRGDLTRTVQIFANLIGNSIKFTSSGYITIRGWAE 597
Query: 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTG-KG 600
+ + + ++ I K L FEVDD+G G
Sbjct: 598 PFVSRYEPLEASGGHIEKFL----------------------------LWFEVDDSGCAG 629
Query: 601 IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
I K ++F+ FVQ + G GLGL IV+S+V M GEI + KE E G R
Sbjct: 630 IDPSKWETVFDSFVQADTSTSRTHGGTGLGLCIVRSLVSKMGGEIKVVKKE--EPGTLMR 687
Query: 661 FNVLLTAVCERERPD 675
F ++ + E PD
Sbjct: 688 FYLMYDSPFEVSTPD 702
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 88/168 (52%), Gaps = 10/168 (5%)
Query: 916 HCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVL 975
HC D F + G+ SH + + + K L G L+ ED ++
Sbjct: 907 HCGDDE-----DGFSSTRGSQDISHRAMELKEYTDEERKEPRASLTGIHILLAEDTPVIQ 961
Query: 976 KVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSD---LRKEGKALPYDYIMMDCEMPVMNG 1032
KV +L KLGA +G+ A + L D + +E K P+D I+MDC+MP M+G
Sbjct: 962 KVAVVLLKKLGATVVAVADGQAAVEAWKGSLKDQAVVDEERK--PFDLILMDCQMPRMDG 1019
Query: 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ ATR IRK EE H+PI+ALTAHAM+ + ++ GMD +LTKP+
Sbjct: 1020 YGATREIRKAEEGSGSHVPIVALTAHAMSSDEERCLEVGMDAYLTKPI 1067
>gi|356561130|ref|XP_003548838.1| PREDICTED: histidine kinase 1-like [Glycine max]
Length = 1197
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 175/334 (52%), Gaps = 22/334 (6%)
Query: 345 LVLMFIAG--VISLGLFIILI-AKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKA 401
LV++ A +I +G ILI +EM L A LI + A +AE S K+ LA
Sbjct: 432 LVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANM 491
Query: 402 SHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKM 461
SH++R +AA+IGL+++ D + + IR CS LL +LN+++++SK+E+GK+
Sbjct: 492 SHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKL 551
Query: 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNL 521
L + EF+L + LE +VDM+ I V+ VLD D VRGD ++ QI NL
Sbjct: 552 VLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDM---PKLVRGDSARVVQIFANL 608
Query: 522 VSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI-----SKCLSKLFFRNKEGFDDLD 576
++NS+KFT GHI +R + + D N N S+C K + E
Sbjct: 609 INNSIKFTLSGHIILRGWCENPNSCSD----NTNFPLEKKKSRCSQKTRAKQHENH---- 660
Query: 577 ALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQS 636
A + R+ ++ + FEVDDTG GI K S+FE F Q + G GLGL IV++
Sbjct: 661 AKRTSNRDNKIILW-FEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRT 719
Query: 637 MVHLMKGEIAIADKE-PGE-RGVCFRFNVLLTAV 668
+V+ M GEI + KE PG +C R + + A
Sbjct: 720 LVNKMGGEIKVVKKEGPGTLMRLCLRLSAPVDAT 753
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 88/154 (57%), Gaps = 19/154 (12%)
Query: 945 QQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHV-- 1002
++ ++ S +K L G + L+ ED ++ +V + +L K+GA +G++A D +
Sbjct: 1028 RRASSSSRAVIGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAVGDGQQAVDALNG 1087
Query: 1003 ------CKILSDLRKEGKAL----------PYDYIMMDCEMPVMNGWEATRLIRKEEEQY 1046
C I L KE PYD I+MDC+MP M+G+EAT+ IRK E
Sbjct: 1088 MPGVEDC-IRESLLKERNTRSSQTEILGCPPYDLILMDCQMPKMDGYEATKAIRKSEVGT 1146
Query: 1047 DVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D+HIPI+ALTAHAM+ +K ++ GMD +LTKP+
Sbjct: 1147 DLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPI 1180
>gi|255577536|ref|XP_002529646.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223530872|gb|EEF32733.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 1206
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 146/533 (27%), Positives = 248/533 (46%), Gaps = 43/533 (8%)
Query: 144 SFAANWYTQPVNRDTGMLYGNAIASIPIVSANASWFQEVINSTNGYSSLVTGLNKEEGSI 203
+ +A WY +P++ TG G A P N + F +V +G +S ++K S
Sbjct: 246 NLSAIWYREPLDPTTGNKIGKASEIQPDDLINIAGFSQV---PDGAASWHVAVSKYTDSP 302
Query: 204 FLHT------------FAMDG--TGFISLGFPAKVVIDLFAALDFHGGDLHLAAADGQVI 249
L A+ G T S+G K ++++ H G ++L + +G ++
Sbjct: 303 LLSAALPVWDASNKSIVAVVGVTTALYSVGQLMKELVEV------HSGHIYLTSQEGYLL 356
Query: 250 IQTKLQNTEMVIYNSTLLLQKLNDDDSPEGSIANHSCVSDKGNPTKF-------NMKIMG 302
+ ++ NS+ + + DS + I + + KF N ++
Sbjct: 357 ATS---TNAPLLRNSSRGPKLMMAVDSEDDIIRMGAQWLESRYGNKFPHAVHEENAELGN 413
Query: 303 KKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIIL 362
++Y L + + V V+ + V +L++L+ + ++ + I++
Sbjct: 414 QQYYIDSFFLNLKRLPIVGVIIIPRRYIMGKVDERAFKTLVILISASVCILVIGCVCILI 473
Query: 363 IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED 422
+ +EM L A LI ++A +AE + K+ LA SH++R +AA+IGL+++ D
Sbjct: 474 LTNGVSKEMKLRAELISHLDARRRAEASNNYKSQFLANMSHELRTPMAAVIGLLDILISD 533
Query: 423 ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY 482
+ + IR CS LL +LN+++++SK+E+GK+ L + EF+L + LE ++DM+
Sbjct: 534 DCLTNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLIDMFS 593
Query: 483 HVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKK 542
I V+ VLD D VRGD ++ QI NL+SNS+KFT+ GHI +R +
Sbjct: 594 VQCINHNVEAVLDLSDEM---PKLVRGDSARVVQIFANLISNSIKFTTSGHIVLRGWCEN 650
Query: 543 KSFKQDIIASNRNVIS-KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGI 601
S D S +C K R + + + + N + FEVDDTG GI
Sbjct: 651 ISTSNDTAKSPLEQKKLRCALKTKLRQQG-----NHMKKASKKENKVILWFEVDDTGCGI 705
Query: 602 PKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE-PG 653
K S+FE F Q + G GLGL IV+++V+ M GEI + K PG
Sbjct: 706 DPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPG 758
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 16/152 (10%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHV-CKILS-DLRKEG- 1013
+K L G + L+ ED ++ +V + +L K+GA +G +A D + C++ + R+E
Sbjct: 1050 QKALEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQAVDALNCRLSGRESRRESV 1109
Query: 1014 -------------KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAM 1060
PYD I+MDC+MP M+G+EAT+ IRK E +HIPI+ALTAHAM
Sbjct: 1110 FQDENNTSQTEMLDPPPYDLILMDCQMPKMDGYEATKAIRKSEAGSGLHIPIVALTAHAM 1169
Query: 1061 AGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
+ +K ++ GMD +LTKP+ ++ + S+
Sbjct: 1170 SSDEAKCLEVGMDAYLTKPIDYKLMVSTILSL 1201
>gi|357517985|ref|XP_003629281.1| Histidine kinase [Medicago truncatula]
gi|355523303|gb|AET03757.1| Histidine kinase [Medicago truncatula]
Length = 1173
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 173/331 (52%), Gaps = 22/331 (6%)
Query: 345 LVLMFIAG--VISLGLFIILI-AKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKA 401
LV++ A +I +G ILI +EM L A LI + A +AE S K+ LA
Sbjct: 420 LVILISASLCIIVIGCVCILILTNGVSKEMNLRAELISHLEARRKAEASSNYKSQFLANM 479
Query: 402 SHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKM 461
SH++R +AA+IGL+++ D + + IR CS LL +LN+++++SK+E+GK+
Sbjct: 480 SHELRTPMAAVIGLLDILLSDDRLTNEQCATVTQIRKCSTALLHLLNNILDISKVESGKL 539
Query: 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNL 521
L E EF+ + LE +VDM+ I V+++LD D VRGD ++ QI NL
Sbjct: 540 VLEEAEFDFGRELEGLVDMFSVQCINHNVEIILDLSDDM---PKLVRGDSARVVQIFANL 596
Query: 522 VSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK---CLSKLFFRNKEGFDDLDAL 578
++NS+KFT GHI +R + + D + N + K C K + E
Sbjct: 597 INNSIKFTLSGHIILRGWCENPNSYGD--SENFTLEQKPFGCSRKTKMKQHEN------- 647
Query: 579 HSVERN--PNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQS 636
HS + + N + FEVDDTG GI K +S+FE F Q + G GLGL IV+S
Sbjct: 648 HSKKASNIDNKMILWFEVDDTGCGIDPSKWDSVFESFEQADLSTTRLHGGTGLGLCIVRS 707
Query: 637 MVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
+V+ M GEI I KE G R + LTA
Sbjct: 708 LVNKMGGEIKIVKKEGP--GTLMRLYMQLTA 736
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 85/142 (59%), Gaps = 7/142 (4%)
Query: 946 QVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKI 1005
+V+ S +K L G + L+ ED A++ +V + +L K+GA +G++A D + +
Sbjct: 1012 RVSGSSKAMNGKKSLEGLRILLAEDTAVIQRVATIMLEKMGATVVAVGDGQQAVDALNGM 1071
Query: 1006 LSDLRK------EGKALP-YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAH 1058
R E + P YD I+MDC+MP M+G+EAT+ IRK E HIPI+ALTAH
Sbjct: 1072 PGVERNTITSQTEILSFPSYDLILMDCQMPKMDGYEATKEIRKSEIGTSFHIPIVALTAH 1131
Query: 1059 AMAGVASKIVDAGMDFHLTKPL 1080
AM+ +K ++ GMD +LTKP+
Sbjct: 1132 AMSCDEAKCLEVGMDAYLTKPI 1153
>gi|224133676|ref|XP_002327653.1| histidine kinase osmosensor protein [Populus trichocarpa]
gi|222836738|gb|EEE75131.1| histidine kinase osmosensor protein [Populus trichocarpa]
Length = 1258
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 145/546 (26%), Positives = 249/546 (45%), Gaps = 33/546 (6%)
Query: 142 NSSFAANWYTQPVNRDTGMLYGNAIASIPIVSANASWFQEVINSTNGYSSLVTGLNKEEG 201
+S+F+A WY +P++ +G G A P N + +V +G +S ++K
Sbjct: 250 HSNFSAIWYREPLDPISGEKKGKASPIPPDDLINIAGLSQV---PDGVASWHVAVSKYTD 306
Query: 202 SIFLHT-FAMDGTGFISLGFPAKVVIDLFAA-------LDFHGGDLHLAAADGQVIIQTK 253
S L + S+ V L++ ++ H G ++L + +G ++ +
Sbjct: 307 SPLLQAALPVWDASNKSIVAVVGVTTSLYSVGQLMRELVEVHSGYIYLTSQEGYLLATS- 365
Query: 254 LQNTEMVIYNSTLLLQKLNDDDSPE-----GSIANHSCVSDKGNPTKF----NMKIMGKK 304
++ NST + D+ E G+ +K P + N K+ ++
Sbjct: 366 --TNAPLLTNSTTRPNLIMAVDTEEPIIRMGARWLEKVYGNKLTPGQIVQVENAKLGNQQ 423
Query: 305 YIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIA 364
Y L + + V V+ + V +L++L+ + ++ + I+++
Sbjct: 424 YYIDSFFLNLKRLPIVGVIIIPRRYIMGKVDERAFKTLVILISASLCILVIGCVCILILT 483
Query: 365 KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
+EM L A LI ++A +AE + K+ LA SH++R +AA+IGL+++ D
Sbjct: 484 NGVSKEMKLRAELISHLDARRRAEASNNYKSQFLANMSHELRTPMAAVIGLLDILICDDC 543
Query: 425 PGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHV 484
+ + IR CS LL +LN+++++SK+E+GK+ L + EF+L + LE ++DM+
Sbjct: 544 LTNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLIDMFSVQ 603
Query: 485 GIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
I V+ VLD D VRGD ++ QI NL+SNS+KFT+ GHI +R + +
Sbjct: 604 CINHNVEAVLDLSDDM---PKLVRGDSARVVQIFANLISNSIKFTTTGHIILRGWCENFN 660
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
D +C K R + + + N FE+DDTG GI
Sbjct: 661 TYNDARFHLDQKKMRCAPKPKLRQQG-----NHTKKAWKKDNKTILWFEIDDTGCGIDPS 715
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
K S+FE F Q + G GLGL IV+++V+ M GEI + K G R +L
Sbjct: 716 KWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKNGS--GTLMRLYLL 773
Query: 665 LTAVCE 670
L A +
Sbjct: 774 LNAAAD 779
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 92/152 (60%), Gaps = 16/152 (10%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILS--DLRKEG- 1013
+K L+G + L+ ED ++ +V + +L K+GAK +G +A + + +LS DL++E
Sbjct: 1102 QKALDGLRILLAEDTPVLQRVATIMLEKMGAKVIAVGDGLQAVEALNCVLSEKDLKRESP 1161
Query: 1014 -------------KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAM 1060
++ PYD I+MDC+MP M+G+EAT+ IRK E HIPI+ALTAHAM
Sbjct: 1162 GDDGERGLQTDIQESPPYDLILMDCQMPKMDGYEATKAIRKSEAGTGFHIPIVALTAHAM 1221
Query: 1061 AGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
+ +K ++ GMD +LTKP+ ++ + S+
Sbjct: 1222 SSDEAKCLEVGMDAYLTKPIDYKLMVSTILSL 1253
>gi|225431092|ref|XP_002265248.1| PREDICTED: histidine kinase 1-like [Vitis vinifera]
Length = 1235
Score = 158 bits (400), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 163/295 (55%), Gaps = 8/295 (2%)
Query: 360 IILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC 419
I+++ +EM L A LI ++A +AE S K+ LA SH++R +AA+IGL+++
Sbjct: 448 ILILTNGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDIL 507
Query: 420 HEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVD 479
D + + IR CS LL +LN+++++SK+E+GK+ L + EF+L + LE +VD
Sbjct: 508 ICDDCLTNEQYATVTQIRKCSTALLRLLNNILDISKVESGKLVLEDAEFDLGRELEGLVD 567
Query: 480 MYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAA 539
M+ I V+ VLD D VRGD ++ QI NL+SNS+KFT+ GHI +R
Sbjct: 568 MFSVQCINHNVETVLDLSDDM---PKLVRGDSARVVQIFANLISNSIKFTTSGHIILRGW 624
Query: 540 VKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGK 599
+ + + S + +++ S+ + K A + ++N N + FEVDDTG
Sbjct: 625 CENSNAYGN---SGKFPLNQKASRSALKAKFKQHRNHAKRACKKN-NKMTLWFEVDDTGC 680
Query: 600 GIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE-PG 653
GI K S+FE F Q + G GLGL IV+++V+ M GEI + K PG
Sbjct: 681 GIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNSPG 735
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 92/156 (58%), Gaps = 16/156 (10%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHV-CK----------I 1005
+K L G + L+ ED ++ +V + +L K+GA +G +A D + C +
Sbjct: 1079 QKSLEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQAVDALKCMPGAEESRGKCL 1138
Query: 1006 LSDLRKEGK-----ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAM 1060
L D R + +LPYD I+MDC+MP M+G+EAT+ IRK EE +HIPI+ALTAHAM
Sbjct: 1139 LQDGRTRCQTQIHDSLPYDLILMDCQMPKMDGYEATKTIRKSEEGTSLHIPIVALTAHAM 1198
Query: 1061 AGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096
+ +K ++ GMD +LTKP+ ++ + S+ + M
Sbjct: 1199 SSDEAKCLEVGMDAYLTKPIDYRLMVSTILSLTKRM 1234
>gi|297734988|emb|CBI17350.3| unnamed protein product [Vitis vinifera]
Length = 1168
Score = 158 bits (400), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 163/295 (55%), Gaps = 8/295 (2%)
Query: 360 IILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC 419
I+++ +EM L A LI ++A +AE S K+ LA SH++R +AA+IGL+++
Sbjct: 448 ILILTNGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDIL 507
Query: 420 HEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVD 479
D + + IR CS LL +LN+++++SK+E+GK+ L + EF+L + LE +VD
Sbjct: 508 ICDDCLTNEQYATVTQIRKCSTALLRLLNNILDISKVESGKLVLEDAEFDLGRELEGLVD 567
Query: 480 MYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAA 539
M+ I V+ VLD D VRGD ++ QI NL+SNS+KFT+ GHI +R
Sbjct: 568 MFSVQCINHNVETVLDLSDDM---PKLVRGDSARVVQIFANLISNSIKFTTSGHIILRGW 624
Query: 540 VKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGK 599
+ + + S + +++ S+ + K A + ++N N + FEVDDTG
Sbjct: 625 CENSNAYGN---SGKFPLNQKASRSALKAKFKQHRNHAKRACKKN-NKMTLWFEVDDTGC 680
Query: 600 GIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK-EPG 653
GI K S+FE F Q + G GLGL IV+++V+ M GEI + K PG
Sbjct: 681 GIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNSPG 735
Score = 108 bits (270), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 92/156 (58%), Gaps = 16/156 (10%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHV-CK----------I 1005
+K L G + L+ ED ++ +V + +L K+GA +G +A D + C +
Sbjct: 1012 QKSLEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQAVDALKCMPGAEESRGKCL 1071
Query: 1006 LSDLRKEGK-----ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAM 1060
L D R + +LPYD I+MDC+MP M+G+EAT+ IRK EE +HIPI+ALTAHAM
Sbjct: 1072 LQDGRTRCQTQIHDSLPYDLILMDCQMPKMDGYEATKTIRKSEEGTSLHIPIVALTAHAM 1131
Query: 1061 AGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096
+ +K ++ GMD +LTKP+ ++ + S+ + M
Sbjct: 1132 SSDEAKCLEVGMDAYLTKPIDYRLMVSTILSLTKRM 1167
>gi|62433091|emb|CAI78447.1| osmosensor histidine-aspartate kinase [Populus x canadensis]
Length = 1249
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 172/316 (54%), Gaps = 12/316 (3%)
Query: 341 SLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAK 400
+L++L+ + ++ +FI+++ +EM L A LI ++A +AE + K+ LA
Sbjct: 452 TLVILISASLCILVIGCVFILILTNGVSKEMKLRAELISHLDARRRAEASNNYKSQFLAN 511
Query: 401 ASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGK 460
SH++R +AA+IGL+++ D + N+ IR CS LL +LN+++++SK+E+GK
Sbjct: 512 MSHELRTPMAAVIGLLDILICDDCLTNEQYANVTQIRKCSTALLRLLNNILDLSKVESGK 571
Query: 461 MELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCN 520
+ L + EF+L + LE ++DM+ I V+ VLD D VRGD ++ QI N
Sbjct: 572 LVLEDAEFDLGRELEGLIDMFSVQCINHNVEAVLDLSDEM---PKLVRGDSARVVQIFAN 628
Query: 521 LVSNSMKFTSEGHISVRAAVK--KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDAL 578
L+SNS+KFT+ GHI +R + ++ ++ + +C K R + + L
Sbjct: 629 LISNSIKFTTTGHIILRGWCENLNNTYNDTQFHLDQKKM-RCAIKPKLRQQG-----NHL 682
Query: 579 HSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMV 638
+ N + FE+DDTG GI K S+FE F Q + G GLGL IV+++V
Sbjct: 683 KKACKKENKMILWFEIDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLV 742
Query: 639 HLMKGEIAIADKE-PG 653
+ M GEI + K PG
Sbjct: 743 NKMGGEIKVVKKNGPG 758
Score = 107 bits (268), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 18/227 (7%)
Query: 884 LIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSS 943
LIE+ E + +N P L+ ++ C P + + +S SS
Sbjct: 1018 LIELADADAEAREDPGQNRPNLQGTQYGNDMLLCNKQVPFSTATRNESSKHDERNSETSS 1077
Query: 944 LQQVAAQSDGKC--SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDH 1001
++ K +K L+G + L+ ED ++ +V + +L K+GAK +G +A +
Sbjct: 1078 HKEQGNSYSNKAGNQQKALDGLRILLAEDTPVLQRVATIMLEKMGAKVITVGDGLQAVEA 1137
Query: 1002 VCKILS--DLRKEG--------------KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQ 1045
+ LS D R+E ++ YD I+MDC+MP M+G+EAT+ IRK E
Sbjct: 1138 LNCSLSEKDCRRESPGNDGNTGLQTDIQESQSYDLILMDCQMPKMDGYEATKAIRKSETG 1197
Query: 1046 YDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
D+HIPI+ALTAHAM+ +K ++ GMD +LTKP+ ++ + S+
Sbjct: 1198 TDLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSL 1244
>gi|356502102|ref|XP_003519860.1| PREDICTED: histidine kinase 1-like [Glycine max]
Length = 1193
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 172/331 (51%), Gaps = 22/331 (6%)
Query: 345 LVLMFIAG--VISLGLFIILI-AKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKA 401
LV++ A +I +G ILI +EM L A LI + A +AE S K+ LA
Sbjct: 432 LVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANM 491
Query: 402 SHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKM 461
SH++R +AA+IGL+++ D + + IR CS LL +LN+++++SK+E+GK+
Sbjct: 492 SHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKL 551
Query: 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNL 521
L + EF+L + LE +VDM+ I V+ VLD D VRGD ++ QI NL
Sbjct: 552 VLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDM---PKLVRGDSARVVQIFANL 608
Query: 522 VSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI-----SKCLSKLFFRNKEGFDDLD 576
++NS+KFT GHI +R + + D N N +C K + E
Sbjct: 609 INNSIKFTLSGHIVLRGWCENPNSCSD----NTNFPLEQKKLRCSQKTRAKQHENH---- 660
Query: 577 ALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQS 636
A + R+ ++ + FEVDDTG GI K S+FE F Q + G GLGL IV++
Sbjct: 661 AKRTSNRDNKMILW-FEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRT 719
Query: 637 MVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
+V+ M GEI + KE G R + L+A
Sbjct: 720 LVNKMGGEIKVVKKEGS--GTLMRLCLRLSA 748
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 19/158 (12%)
Query: 942 SSLQQVAAQSDGKC--SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAF 999
SSL A S + +K L G + L+ ED ++ +V + +L K+GA +G++A
Sbjct: 1019 SSLNSNDASSSSRAVSGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAIVVAVGDGRQAV 1078
Query: 1000 DHVCKI--LSDLRKEG---------------KALPYDYIMMDCEMPVMNGWEATRLIRKE 1042
D + + + D R+E PYD I+MDC+MP M+G+EAT+ IRK
Sbjct: 1079 DALNGMSGVEDCRRETLLKERNTRSSQTEILSCPPYDLILMDCQMPKMDGYEATKAIRKS 1138
Query: 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
EE +HIPI+ALTAHAM+ +K ++ GMD +LTKP+
Sbjct: 1139 EEGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPI 1176
>gi|428312058|ref|YP_007123035.1| ATPase [Microcoleus sp. PCC 7113]
gi|428253670|gb|AFZ19629.1| putative ATPase [Microcoleus sp. PCC 7113]
Length = 2014
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 156/286 (54%), Gaps = 34/286 (11%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+AE + K+ LA SH++R L AI+G +L + EN+G+I +
Sbjct: 1521 AKEKAEVANKAKSTFLANMSHELRTPLNAILGFSQLMTRSKTLPPEHIENVGIISRSGEH 1580
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N+V+++SKIEAG+ L E F+L +LL+++ DM+ KG+ ++ C+ +
Sbjct: 1581 LLTLINNVLDLSKIEAGRTTLNETNFDLYRLLDDLEDMFRFKANDKGLQLI---CERASD 1637
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++R D KL+QIL NL+SN++KFT +G +SVR + Q + A+ +
Sbjct: 1638 VPQYMRTDETKLRQILINLLSNALKFTKQGGVSVRVGMNN---SQSLKATGK-------- 1686
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+ G +P L FE++DTG G+ ++ +++FE FVQ K T
Sbjct: 1687 ------ESGI-----------SPKKLAITFEIEDTGAGMAAEELDTLFEAFVQTK-TGKE 1728
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
QEG GLGL I +S V LM G+I + + +G F+F++L++ V
Sbjct: 1729 SQEGTGLGLPITRSFVQLMGGKITV--RSSVGKGTLFKFDILVSPV 1772
Score = 45.8 bits (107), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ +D ++ +L LG + NGKEA +I + P+ I M
Sbjct: 1797 RILIADDKWSNRQLLIKLLNPLGFELREASNGKEA----VEIWDEWE------PH-LIWM 1845
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MPVM+G+EAT+ I+ + +IALTA ++ + ++ AG D + KP ++
Sbjct: 1846 DMQMPVMDGYEATKQIKATIKGQAT--AVIALTATSLEEERAVVLSAGCDDFIRKPFREA 1903
Query: 1084 KLLDVV 1089
+ D +
Sbjct: 1904 DIFDTM 1909
>gi|254413568|ref|ZP_05027338.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196179675|gb|EDX74669.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1315
Score = 147 bits (370), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 148/288 (51%), Gaps = 41/288 (14%)
Query: 376 ALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL 435
AL + +A E A R K+ LA SH++R L AI+G +L + D ENL +
Sbjct: 836 ALTEAKDAAETANRA---KSTFLANMSHELRTPLNAIMGFTQLMQRSSTFPADYQENLQI 892
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
I S+ LL ++N V+++SKIEAG++ L + F+L LL +V +++ KG+ ++ D
Sbjct: 893 IYRSSEHLLTLINQVLDLSKIEAGRITLNQTVFDLYALLRDVENLFQIKARDKGLQLLFD 952
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
D +V+ D VKL+Q+L NL+SN+ KFT EG ISV+ +
Sbjct: 953 YSDQV---PQYVQTDAVKLRQVLINLLSNAFKFTQEGGISVKVS---------------- 993
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
G D + P + +FE++DTG G+ ++ SIF+ F+Q
Sbjct: 994 --------------RGIDVGET--PTANKPEEITLQFEIEDTGAGMAAEELESIFDAFIQ 1037
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
K T HQEG GLGL I + V LM G++ +A + ++G FRF +
Sbjct: 1038 SK-TGKQHQEGTGLGLSISRKFVQLMGGDLTVASQ--VDQGTVFRFEI 1082
Score = 46.6 bits (109), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 947 VAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKIL 1006
+A +S+ C + L+V+D ++ +L LG + NGK+A I
Sbjct: 1102 IALESNQPC-------YRILIVDDQIDNRQLLIQLLNPLGFLLQEATNGKDA----IAIW 1150
Query: 1007 SDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASK 1066
+ + P+ I MD MP+M+G+EAT+ I+ + IIA+TA ++ +
Sbjct: 1151 QNWQ------PH-LIFMDMRMPIMDGYEATQQIKATTQ--GQATAIIAVTASSLDSQKAV 1201
Query: 1067 IVDAGMDFHLTKPLQKDKLLDVV 1089
I+ G D ++KP + ++ D +
Sbjct: 1202 ILSMGCDGFISKPFRDGEIFDAI 1224
>gi|224152027|ref|XP_002337182.1| histidine kinase osmosensor protein [Populus trichocarpa]
gi|222838420|gb|EEE76785.1| histidine kinase osmosensor protein [Populus trichocarpa]
Length = 318
Score = 144 bits (363), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 164/300 (54%), Gaps = 11/300 (3%)
Query: 341 SLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAK 400
+L++L+ + ++ +FI+++ +EM L A LI ++A +AE + K+ LA
Sbjct: 11 TLVILISASLCILVIGCVFILILTNGVSKEMKLRAELISHLDARRRAEASNNYKSQFLAN 70
Query: 401 ASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGK 460
SH++R +AA+IGL+++ D + N+ IR CS LL +LN+++++SK+E+GK
Sbjct: 71 MSHELRTPMAAVIGLLDILICDDCLTNEQYANVTQIRKCSTALLRLLNNILDLSKVESGK 130
Query: 461 MELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCN 520
+ L + EF+L + LE ++DM+ I V+ VLD D VRGD ++ QI N
Sbjct: 131 LVLEDAEFDLGRELEGLIDMFSVQCINHNVEAVLDLSDEM---PKLVRGDSARVVQIFAN 187
Query: 521 LVSNSMKFTSEGHISVRAAVK--KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDAL 578
L+SNS+KFT+ GHI +R + ++ ++ + +C K R + G + L
Sbjct: 188 LISNSIKFTTTGHIILRGWCENLNNTYNDTQFHLDQKKM-RCAIKPKLR-QHG----NHL 241
Query: 579 HSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMV 638
+ N + FE+DDTG GI K S+FE F Q + G GLGL IV+++V
Sbjct: 242 KKACKKENKMILWFEIDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLV 301
>gi|153870045|ref|ZP_01999526.1| two-component system sensor histidine kinase/response regulator
[Beggiatoa sp. PS]
gi|152073490|gb|EDN70475.1| two-component system sensor histidine kinase/response regulator
[Beggiatoa sp. PS]
Length = 1258
Score = 143 bits (361), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 176/363 (48%), Gaps = 44/363 (12%)
Query: 339 KLSLMLLVLMFIAGVISLGLFIILIAK--------------AAKREMFL-----CAALIK 379
++SL+LL++ F+ G + I+ K + K E + A +
Sbjct: 699 RISLLLLIMGFMVGGFRWRISIVENQKCQLEIQVVQRTKELSEKTEELMQSHQELAQSYQ 758
Query: 380 QM-NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
Q+ A E+AE + K+ LA SH++R L AI+G ++ H + T+ +NL +I
Sbjct: 759 QLETAKEKAEVANRAKSTFLASMSHELRTPLNAILGFAQIMHRSSTLPTEHRDNLNIINR 818
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
LL ++N V++MSKIEAGK+ L E+ F+L +LL+E+ D++Y K + + ++ D
Sbjct: 819 SGNYLLSLINDVLDMSKIEAGKITLDEQNFDLYRLLDEIYDLFYLKAESKQLQLQVERSD 878
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
++R D KL+Q++ NL+SN++KFT +G +S+ A D IASN +
Sbjct: 879 HL---PRYIRTDGKKLRQVIINLISNALKFTQDGGVSLYA---------DKIASNTSGEV 926
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
S R + D D N + F V DTG G+ +++ + +FE F Q
Sbjct: 927 PPPSGRRLRGGKNPDGEDV------NTEITTLHFSVADTGAGVAQEEMDKLFEAFSQTA- 979
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDE 678
T QEG GLGL I + LM G I + E G +G F + V E D+
Sbjct: 980 TGRASQEGSGLGLPISRQFTQLMGGNIQVR-SEVG-KGTVFEVTIRAQIV---EAADSTS 1034
Query: 679 EDP 681
E P
Sbjct: 1035 EQP 1037
Score = 48.5 bits (114), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D ++ +L G + NG+EA D L I M
Sbjct: 1052 RLLIVDDKWENRQLLIQLLNPFGFELREATNGQEAIDIFEHWQPHL-----------IWM 1100
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP+M+G +AT+ I+ + + V IIALTA + I+ G D L KP ++
Sbjct: 1101 DIRMPIMDGLQATQQIKAKPQGQSV--AIIALTASVLEEERENILAVGCDDFLHKPFKEG 1158
Query: 1084 KLLDVV 1089
+ D++
Sbjct: 1159 TIFDLM 1164
>gi|403380383|ref|ZP_10922440.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JC66]
Length = 755
Score = 143 bits (360), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 114/359 (31%), Positives = 170/359 (47%), Gaps = 71/359 (19%)
Query: 343 MLLVLMFIAGVI----SLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFAL 398
+L VL+ IA ++ + G +II ++E+ + A + AE + K+ L
Sbjct: 330 VLDVLITIAPIMISSKNTGFYIIAKDMTEQKEL---------LQAKQTAEATNQAKSEFL 380
Query: 399 AKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEA 458
A SH++R + IIG+ +L E + + E L +IR LL I+N +++ SKI++
Sbjct: 381 AMLSHEIRTPMNGIIGMTDLLLETTSINEEQLEYLKIIRKSGHTLLAIINDILDFSKIDS 440
Query: 459 GKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQIL 518
GK ELV E F+L + EV+D+ ++KG+ + L D S+ V+GD +LKQ++
Sbjct: 441 GKTELVHEVFDLKECFHEVIDLLTPSALEKGLPIHL-TIDESL--PEKVKGDAKRLKQVV 497
Query: 519 CNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDAL 578
NLV NS+KFT G +SV VK+K +C K
Sbjct: 498 LNLVGNSIKFTLHGSVSVH--VKRK--------------LQCCGK--------------- 526
Query: 579 HSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMV 638
+Q EV DTG GIP+DK++ +FE F QV EG GLGL I + +V
Sbjct: 527 ---------VQLLVEVSDTGLGIPEDKRDRLFEPFYQVDAFMKRETEGTGLGLAISKKLV 577
Query: 639 HLMKGEI-AIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHF 696
LM G+I + D PG F+F VLL DE P P G H+ +
Sbjct: 578 QLMGGDIWLVPDSSPGS---TFQFTVLL-----------DEVIPEPKITGPAAGTHEEY 622
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 12/145 (8%)
Query: 946 QVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKI 1005
++ + G E + L+ ED I V +L +G V NG E
Sbjct: 610 KITGPAAGTHEEYDYRRLRILIAEDHPINQMVLRKMLDNMGHHTAVVENGAEVV------ 663
Query: 1006 LSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVAS 1065
KE YD I MD MP+MNG EA +R+ + + + I+A+TA+A+ G
Sbjct: 664 -----KEALNNKYDLIFMDVHMPLMNGIEAAVTLRETLGEKECPV-IVAVTANALKGDRE 717
Query: 1066 KIVDAGMDFHLTKPLQKDKLLDVVK 1090
K + +GMD +L+KP+ ++++V++
Sbjct: 718 KYLASGMDDYLSKPITSGRVMEVIR 742
>gi|218887540|ref|YP_002436861.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758494|gb|ACL09393.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 1177
Score = 142 bits (359), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 150/285 (52%), Gaps = 26/285 (9%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA----ENLGLIR 437
A + ER S K+ LA +H++R + A+IG+V++ GTDLA E L L+R
Sbjct: 257 TAQARVERASRAKSEFLAGVTHELRTPMNAVIGMVDITL-----GTDLAPKQREYLNLVR 311
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
+ ++ LLG++N V++ SK+EAG++ L F LLEEV D+++ K +++V+D
Sbjct: 312 SSARSLLGVVNGVLDFSKLEAGRLALEAIPFRTRDLLEEVTDLFHDRLAIKDIELVVD-I 370
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V + GD ++L+Q+L NL +N+ KFT G + +R V + + + A N+
Sbjct: 371 DTGV--PPVLVGDPLRLRQVLVNLAANAFKFTERGEVVIR--VGRADTEANAGAGAENIP 426
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+ G H N ++ F V DTG GI + + +FE + Q
Sbjct: 427 EAPADGTTDSPQTG-----GAHG-----NGVELAFSVRDTGIGIAPEARERLFESYSQAD 476
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
+ G GLGL IV+++VHLM G++ + D EPG RG FRF
Sbjct: 477 VSVSRRFGGTGLGLSIVRALVHLMGGDVGV-DSEPG-RGSTFRFT 519
>gi|254412939|ref|ZP_05026711.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196180103|gb|EDX75095.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1055
Score = 142 bits (358), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 156/292 (53%), Gaps = 39/292 (13%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A + AE + K+ LA SH++R L AI+G +L DA+ D + LG+I +
Sbjct: 580 ALDAAEAANHGKSEFLANMSHELRTPLNAILGFTQLMARDASLNQDQQDYLGIITRSGEH 639
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N+V+ MSKIEAG++ L E F+L L++ + +M + KGV ++++
Sbjct: 640 LLDLINNVLNMSKIEAGRISLSENSFDLYSLVDSIAEMLRLKALSKGVQLMVERTANV-- 697
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ D KL+QIL NLV N++KFTS+G + +R V++ S D I + N ++ S
Sbjct: 698 -PNYGMADEGKLRQILINLVGNAVKFTSQGRVILR--VQEIS---DRITAPTNTDTQ--S 749
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+LF FEV+DTG GIP D+ +++F+ FVQ K T+
Sbjct: 750 RLF--------------------------FEVEDTGVGIPPDELDTLFQAFVQTK-TSQR 782
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
Q G GLGL I + V LM G+I I + PG+ G +F++ + V + + P
Sbjct: 783 SQSGTGLGLAISRRFVQLMGGDITI-NSTPGQ-GTLVKFDIPIGIVLQDQTP 832
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 65/146 (44%), Gaps = 21/146 (14%)
Query: 945 QQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEA---FDH 1001
Q ++ Q G ++P + LVVED K L LG NG+ A ++H
Sbjct: 834 QPLSQQVIGIAPDQP--NYRILVVEDQWANRKPLVKFLESLGLDVREADNGQVAVAIWEH 891
Query: 1002 VCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMA 1061
L I +D MPVMNG+EAT+LI+ IIALTA A
Sbjct: 892 WHPHL--------------IWLDMRMPVMNGYEATQLIKSHP--LGKTTVIIALTASAFD 935
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLD 1087
+ I+DAG D + KP + D +L+
Sbjct: 936 EERTAILDAGCDDFVAKPFRTDAILE 961
>gi|162456717|ref|YP_001619084.1| two-component hybrid sensor and regulator [Sorangium cellulosum So
ce56]
gi|161167299|emb|CAN98604.1| two-component hybrid sensor and regulator [Sorangium cellulosum So
ce56]
Length = 553
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 145/278 (52%), Gaps = 43/278 (15%)
Query: 391 SMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSV 450
S +K+ LA SH++R L +I+G +L D + ENL +I + LLG++N +
Sbjct: 76 SRSKSAFLANMSHELRTPLNSILGFAQLVERDPSLADRHRENLAVICKSGEHLLGLVNDI 135
Query: 451 MEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGD 510
+EM+KIEAG+M LV+ EF+L L + +M+ K+G+ + ++ HV GD
Sbjct: 136 LEMAKIEAGRMTLVDAEFDLHDTLSGLSEMFAVEAQKRGLTLTVERAQDV---PRHVHGD 192
Query: 511 RVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKE 570
KL+Q+L NL+ N++KFT G +++RA+ ++ + D A+ R +S
Sbjct: 193 EGKLRQVLINLLGNALKFTPRGSVTLRASARRATGAHDGAAAGRVRVS------------ 240
Query: 571 GFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ--EGLG 628
FEV DTG+G+ K + +FE F Q TA G Q EG G
Sbjct: 241 ---------------------FEVTDTGRGMAKAELAELFEAFAQ---TATGRQSREGTG 276
Query: 629 LGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
LGL I + +V +M G+I + + + G RG RF+V L+
Sbjct: 277 LGLHISRRIVRMMGGDIRV-ESQVG-RGTTLRFDVRLS 312
>gi|428320718|ref|YP_007118600.1| PAS sensor protein [Oscillatoria nigro-viridis PCC 7112]
gi|428244398|gb|AFZ10184.1| PAS sensor protein [Oscillatoria nigro-viridis PCC 7112]
Length = 2192
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 161/317 (50%), Gaps = 52/317 (16%)
Query: 365 KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
+ + R + L +I++ A + A+ + K+ LA SH++R L AI+G +L + +N
Sbjct: 1687 QVSDRTLELQREIIERQRAEDAAQAANRAKSTFLANMSHELRTPLNAILGFSQLLNRSSN 1746
Query: 425 PGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHV 484
+ E+L +I + LL ++N V+++SKIEAG+ L + F+L +LL+++ +M+
Sbjct: 1747 LLQEQQEHLNIITRSGEHLLELINQVLDLSKIEAGRATLNQTNFDLHRLLDDIENMFQLP 1806
Query: 485 GIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
KG+ ++++ G +VR D +KL+QIL NL+SN++KFTSEG I V+
Sbjct: 1807 AQNKGLQLLVERMVGV---PQYVRTDEIKLRQILINLISNAIKFTSEGGIYVK------- 1856
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
+N E H Q FEV+DTG GI
Sbjct: 1857 ---------------------IKNSE------LAH---------QIYFEVEDTGAGIDAS 1880
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
+ + IFE FVQ K T Q+G GLGL I +S V LM GE+ ++ + G F+F++
Sbjct: 1881 ELDKIFEAFVQTK-TGEESQQGTGLGLTIARSFVQLMGGEMTVSSR--AGCGTIFKFDIK 1937
Query: 665 LTAVCERERPDTDEEDP 681
+ +V E D E P
Sbjct: 1938 VNSV---ESADRQREQP 1951
Score = 46.6 bits (109), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 40/154 (25%)
Query: 959 PLNGKKFLVVEDDA-----IVLKVTSAVLGKLGAKFEV--CRNGKEAFDHVCKILSDLRK 1011
P + ++V DDA +++K+ SA+ FEV +NG+EA + K
Sbjct: 1960 PNQPRYRILVADDAFDNRQLLVKLLSAI------GFEVYEAKNGREAIE----------K 2003
Query: 1012 EGKALPYDYIMMDCEMPVMNGWEATRLIRK---------EEEQYDVHIP-------IIAL 1055
+ P+ I MD MPVM+G+EAT+ I++ E E + +P IIA+
Sbjct: 2004 WEQYSPH-LIFMDMRMPVMDGYEATKQIKEGNHRGIAPTENEDFVGVVPPCLPQTAIIAI 2062
Query: 1056 TAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
TA + + ++ G D + KP ++ + DV+
Sbjct: 2063 TASSFEEEKAVVLSTGCDDFIRKPFREANIFDVL 2096
>gi|300868651|ref|ZP_07113263.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300333345|emb|CBN58455.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 663
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 159/304 (52%), Gaps = 38/304 (12%)
Query: 370 EMFLCAALIKQMNA-----TEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
E+ L A + ++NA E+AE + K+ LA SH++R+ L AI+G ++
Sbjct: 160 ELRLAARKVDELNAELAEAKEKAEVANEAKSIFLANMSHELRSPLNAILGFSQIMTRSKT 219
Query: 425 PGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHV 484
++ EN+G+I + LL ++N+V+++SKIEAG L E+ F+L +LL+++ DM++
Sbjct: 220 LPSEHIENVGIISRSGEHLLSLINNVLDLSKIEAGHTTLNEKNFDLYRLLDDLEDMFHLK 279
Query: 485 GIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
+ + ++ + +VR D VKL+QIL NL++N++KFT G +SVR S
Sbjct: 280 ADDRRLQLIFERSPDV---PRYVRTDEVKLRQILINLLNNALKFTQVGGVSVRVVTDGGS 336
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
+ + I+ K R FEV+D+G GI +
Sbjct: 337 L---VTGTATKQITDESEKTMLR------------------------FEVEDSGPGIAPE 369
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
+ +S+FE FVQ +T QEG GLGL I + V LM GEIA++ E G G F+FN+
Sbjct: 370 ELDSLFEVFVQT-QTGKEAQEGTGLGLPISRKFVQLMGGEIAVS-SEVGS-GTNFKFNIQ 426
Query: 665 LTAV 668
+ V
Sbjct: 427 VNVV 430
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D + ++ +L G + +GKEA + ++D + P+ I M
Sbjct: 455 RILIVDDKPLNRQLLIQLLNPFGFALKEAMDGKEAVE-----IADSWE-----PH-LIWM 503
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM+G+EAT+ I+ + IIALTA + + I+ AG D + KP ++
Sbjct: 504 DMRMPVMDGYEATKQIKGSTKGQ--ATAIIALTASVLEEERAVILSAGCDDFMRKPFREA 561
Query: 1084 KLLDVVK 1090
+ ++
Sbjct: 562 DIFTAIE 568
>gi|302764822|ref|XP_002965832.1| hypothetical protein SELMODRAFT_84050 [Selaginella moellendorffii]
gi|300166646|gb|EFJ33252.1| hypothetical protein SELMODRAFT_84050 [Selaginella moellendorffii]
Length = 229
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 136/266 (51%), Gaps = 44/266 (16%)
Query: 402 SHDVRASLAAIIGLVELCHEDA-NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGK 460
SH++R +A IIG++++ D P + ++G IR C+ LL ++N+V+++SK+EAGK
Sbjct: 5 SHELRTPMAGIIGMLDILSCDTLTP--EQETSVGQIRRCATGLLSMVNNVLDISKVEAGK 62
Query: 461 MELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCN 520
M+L FNLA LE +VDM+ VDV LD D ++GD +++QI N
Sbjct: 63 MDLDLAPFNLASELESLVDMFAAQSYAASVDVALDLSDTIPQA---LKGDACRIRQIFSN 119
Query: 521 LVSNSMKFTSEGHISVRA-AVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALH 579
L+SNSMKFT GHI +R A +K D
Sbjct: 120 LLSNSMKFTENGHIVIRGWADEKPEISSD------------------------------- 148
Query: 580 SVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVH 639
P+ + FEVDDTG GIP ++F+ FVQ ++ G GLGL IV+S+V
Sbjct: 149 ----GPSFINLIFEVDDTGCGIPSHMHETVFDSFVQADASSTRIHGGSGLGLYIVRSLVQ 204
Query: 640 LMKGEIAIADKEPGERGVCFRFNVLL 665
M GE+ + K+ G RFN+++
Sbjct: 205 KMGGEVQVICKQ--GPGTLIRFNIVM 228
>gi|347733498|ref|ZP_08866555.1| HAMP domain protein [Desulfovibrio sp. A2]
gi|347517732|gb|EGY24920.1| HAMP domain protein [Desulfovibrio sp. A2]
Length = 1132
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 150/299 (50%), Gaps = 30/299 (10%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA----ENLGLIR 437
A + ER S K+ LA +H++R + A+IG+V++ GTDL+ E L L+R
Sbjct: 256 TARARVERASHAKSEFLAGVTHELRTPMNAVIGMVDITL-----GTDLSPKQREYLNLVR 310
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
+ ++ LLG++N V++ SK+EAG++ L F LLEEV D+++ K +++V+D
Sbjct: 311 SSARSLLGVVNGVLDFSKLEAGRLTLESIPFRTRDLLEEVTDLFHDRLAVKDIELVVD-I 369
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V + GD ++L+Q+L NL +N+ KFT G + +R A+ + +
Sbjct: 370 DTDV--PPVLVGDPLRLRQVLVNLAANAFKFTERGEVVIRVALPATEVGP---GEGPDTL 424
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+ + G D + F V DTG GI + + +FE + Q
Sbjct: 425 ADARAGATPGRPSGMSD-------------VTLAFSVRDTGIGIAPEARARLFESYSQAD 471
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT 676
+ G GLGL IV+++V LM G++ + D EPG RG FRF ERE +T
Sbjct: 472 ASVSRRFGGTGLGLSIVRALVQLMGGDVDV-DSEPG-RGSTFRFTARFGLPPEREAAET 528
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 16/186 (8%)
Query: 921 NPLNKLKSFGAEAGASI-SSHCSSLQQVAAQSDGKCSEKP-LNGKKFLVVEDDAIVLKVT 978
P GA A ASI S AA++ P L G + L+V+D+ I V
Sbjct: 733 TPRPHRPPIGAAAAASIPGSFADPAGNPAARAPFPEPIDPALRGTRVLLVDDNPINRAVA 792
Query: 979 SAVLGKLGAKFEVCRNGKEAFD---HVCKILSDLRKEGKALP-------YDYIMMDCEMP 1028
+L G E +G+EA H ALP +D +++D +MP
Sbjct: 793 MEMLTSAGVAVETAPSGEEALAALAHGNGTPQGPGGPPHALPETLADAPFDAVLLDIQMP 852
Query: 1029 VMNGWEATRLIRKEEEQYDVHI----PIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
M+G++ IR+ + + P+IA TA + AG+ L KP+++ +
Sbjct: 853 GMDGYQVATAIREHGAANGLRLRPGAPVIAFTARVEGEDEDALRRAGIATRLPKPVERGE 912
Query: 1085 LLDVVK 1090
LL ++
Sbjct: 913 LLSTLR 918
>gi|302802654|ref|XP_002983081.1| hypothetical protein SELMODRAFT_117531 [Selaginella moellendorffii]
gi|300149234|gb|EFJ15890.1| hypothetical protein SELMODRAFT_117531 [Selaginella moellendorffii]
Length = 229
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 136/266 (51%), Gaps = 44/266 (16%)
Query: 402 SHDVRASLAAIIGLVELCHEDA-NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGK 460
SH++R +A IIG++++ D P + ++G IR C+ LL ++N+V+++SK+EAGK
Sbjct: 5 SHELRTPMAGIIGMLDILSCDTLTP--EQETSVGQIRRCATGLLSMVNNVLDISKVEAGK 62
Query: 461 MELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCN 520
M+L FNLA LE +VDM+ VDV LD D ++GD +++QI N
Sbjct: 63 MDLDLAPFNLASELESLVDMFAAQSYAASVDVALDLSDTIPQA---LKGDACRIRQIFSN 119
Query: 521 LVSNSMKFTSEGHISVRA-AVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALH 579
L+SNSMKFT GHI +R A +K D
Sbjct: 120 LLSNSMKFTENGHIVIRGWADEKPEISSD------------------------------- 148
Query: 580 SVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVH 639
P+ + FEVDDTG GIP ++F+ FVQ ++ G GLGL IV+S+V
Sbjct: 149 ----GPSFINVIFEVDDTGCGIPSHMHETVFDSFVQADASSTRIHGGSGLGLYIVRSLVQ 204
Query: 640 LMKGEIAIADKEPGERGVCFRFNVLL 665
M GE+ + K+ G RFN+++
Sbjct: 205 KMGGEVQVICKQ--GPGTLIRFNIVM 228
>gi|78355591|ref|YP_387040.1| multi-sensor hybrid histidine kinase [Desulfovibrio alaskensis G20]
gi|78217996|gb|ABB37345.1| multi-sensor hybrid histidine kinase [Desulfovibrio alaskensis G20]
Length = 981
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 150/285 (52%), Gaps = 54/285 (18%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA----ENLGLIR 437
+A AE+ S K +A SH++R + AIIG++E+ + T+L E L +IR
Sbjct: 257 HARHTAEQASKAKGDFVASMSHELRTPMNAIIGMIEIALK-----TELTVKQREYLTIIR 311
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
+ ++ LLG++N ++++SKIEA KMEL F+ ++LEEV D++ KGV++VLD
Sbjct: 312 SSARSLLGVVNDILDISKIEAQKMELEHIPFSTQEMLEEVTDLFRERVGMKGVELVLD-I 370
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ V + GD ++LKQ+L NLV+N+ KFT +G + +R AV +S QD++
Sbjct: 371 EADV--PAVLVGDPLRLKQVLVNLVTNAFKFTKQGEVRIRVAVGSRS--QDVV------- 419
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
Q EF V DTG GI ++ +N +F+ F Q +
Sbjct: 420 -------------------------------QLEFSVRDTGLGIGEEARNRLFDTFSQAE 448
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
+ G GLGL I + +V LM G I +A EPG +G FRF
Sbjct: 449 GSTARLFGGSGLGLSIARELVRLMGGTITVA-SEPG-KGSDFRFT 491
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 79/134 (58%), Gaps = 9/134 (6%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+ +G + L+VED+ I V +L +G +G+EA +L D+ E + P
Sbjct: 647 RQFDGMRALLVEDNIINRHVALDMLQDMGFSVVSAEHGEEAL----AVLDDV--EPPSGP 700
Query: 1018 -YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
+D + MD +MPVM+G EATR+IR+ HIPIIA+TAH M+ K ++AGM+ ++
Sbjct: 701 GFDVVFMDIQMPVMDGIEATRVIRQHPRWR--HIPIIAMTAHVMSEDRDKALEAGMNDYV 758
Query: 1077 TKPLQKDKLLDVVK 1090
TKP+ + LL V++
Sbjct: 759 TKPVDRMMLLQVLQ 772
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 954 KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEG 1013
+ E P + L+VED+ V + +L +LG + ++G A++ + +
Sbjct: 507 RTGEAPRG--RVLLVEDNESNRLVMTRMLERLGYDCDALQDGYTAYERLKR--------- 555
Query: 1014 KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
+A YD I++D +P ++G E +R E++ P+ +TA + + G+
Sbjct: 556 QAALYDLILLDWRLPGVDGLEVLEKLRAEKQPLP---PVFMMTAFGREAELERAEELGVA 612
Query: 1074 FHLTKPLQKDKLLDVVKSIDETM 1096
L+KP++ L D ++++ M
Sbjct: 613 SFLSKPVKLSSLSDAIRAMRGEM 635
>gi|410029174|ref|ZP_11279010.1| PAS domain-containing protein [Marinilabilia sp. AK2]
Length = 1441
Score = 140 bits (352), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 154/308 (50%), Gaps = 55/308 (17%)
Query: 361 ILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCH 420
I + K A+RE++L A E+AE+ S K+ L+ SH++R + A+IG+ L
Sbjct: 1046 ITLLKEAQRELYL---------AKEKAEQASKVKSQFLSIMSHEIRTPMNAVIGMAHLLI 1096
Query: 421 EDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDM 480
ED NP D ENL ++ +++LLG++N +++ +KI++GK+EL +F L L+ ++
Sbjct: 1097 ED-NPRPDQLENLKTLQFSAENLLGLINDILDFTKIDSGKVELEHVDFELKNLINRIIHS 1155
Query: 481 YYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAV 540
Y + +K +D++ D D + + GD V+L QI+ NLVSN++KFT +G+I +
Sbjct: 1156 YTYQAREKALDIIFD-YDEEI--PSKLLGDPVRLGQIVNNLVSNAVKFTPQGYIRI---- 1208
Query: 541 KKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKG 600
AL V+ N + +F+ +DTG G
Sbjct: 1209 ------------------------------------ALTRVDDNSEEIAIKFDFEDTGIG 1232
Query: 601 IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
IP++K +IF+ F Q G GLGL IV+ +V L G+I + + G G F
Sbjct: 1233 IPEEKSKTIFDAFTQASAETTRKFGGTGLGLAIVKKLVDLFGGDIQVKPRIGG--GTLFT 1290
Query: 661 FNVLLTAV 668
F + +
Sbjct: 1291 FVIRFQKI 1298
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 18/143 (12%)
Query: 944 LQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGA-KFEVCRNGKEAFDHV 1002
QQ+A SEK L K LV ED+ + + + L K G + + NGKEA
Sbjct: 1306 FQQIA------TSEKDLQKAKILVAEDNLVNQVMINKFLMKWGVNEVVIAENGKEAI--- 1356
Query: 1003 CKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAG 1062
KE + +++D +MP M+G+E IR + ++PIIALTA ++
Sbjct: 1357 --------KEFDKTDFHLVLLDLQMPEMDGFEVASYIRSHPDIKKRNMPIIALTASSLID 1408
Query: 1063 VASKIVDAGMDFHLTKPLQKDKL 1085
V ++ + GMD + KP D L
Sbjct: 1409 VKQQLDEVGMDDFIPKPFNPDDL 1431
>gi|406660793|ref|ZP_11068921.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Cecembia lonarensis
LW9]
gi|405555346|gb|EKB50380.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Cecembia lonarensis
LW9]
Length = 1441
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 155/308 (50%), Gaps = 55/308 (17%)
Query: 361 ILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCH 420
I + K A++E++L A E+AE+ S K+ L+ SH++R + A+IG+ L
Sbjct: 1046 ITLLKEAQKELYL---------AKEKAEQASKVKSQFLSIMSHEIRTPMNAVIGMAHLLI 1096
Query: 421 EDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDM 480
ED NP D ENL ++ +++LLG++N +++ +KI++GK+EL +F L ++ ++
Sbjct: 1097 ED-NPRPDQLENLKTLQFSAENLLGLINDILDFTKIDSGKVELEHVDFELKNVINRIIHS 1155
Query: 481 YYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAV 540
Y + +K +D++ + D + + GD V+L QI+ NLVSN++KFT +G I +
Sbjct: 1156 YTYQAREKALDILFE-YDEEI--PSKLLGDPVRLGQIVNNLVSNAVKFTPQGFIRI---- 1208
Query: 541 KKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKG 600
AL ++ N + +F+ +DTG G
Sbjct: 1209 ------------------------------------ALTRIDENSEEIAIKFDFEDTGIG 1232
Query: 601 IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
IP++K +S+FE F Q G GLGL IV+ +V L G+I + +E G G F
Sbjct: 1233 IPEEKLDSVFEAFTQASAETTRKFGGTGLGLAIVKKLVALFGGDIQVIPREGG--GTLFT 1290
Query: 661 FNVLLTAV 668
F V V
Sbjct: 1291 FVVRFQKV 1298
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 17/160 (10%)
Query: 932 EAGASISSHCSSLQQVAAQSDGK-----CSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLG 986
E G ++ + Q+V +D +EK L+ K LV ED+ + + + L K G
Sbjct: 1283 EGGGTLFTFVVRFQKVKVFTDVHLKQIAATEKDLHQAKILVAEDNLVNQVMINKFLMKWG 1342
Query: 987 A-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQ 1045
+ + NGKEA KE + +++D +MP M+G+E IR +
Sbjct: 1343 VNEVVIAENGKEAI-----------KEFDDSDFHLVLLDLQMPEMDGFEVASYIRAHLDP 1391
Query: 1046 YDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+ PIIALTA ++ V ++ + GMD + KP D L
Sbjct: 1392 HKKKTPIIALTASSLIDVKQQLDEVGMDDFIPKPFNPDNL 1431
>gi|256827994|ref|YP_003156722.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
gi|256577170|gb|ACU88306.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
Length = 758
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 148/310 (47%), Gaps = 58/310 (18%)
Query: 377 LIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGL 435
L++ +A +A+ + K+ LA SH++R L I+GL EL NPG + E L L
Sbjct: 370 LLQLQSARRKADEANEAKSLFLAHMSHEIRTPLTGIMGLAELAIGNPGNPG--VQEYLTL 427
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIK-KGVDVVL 494
IR ++LL I+N +++ SK+EAGK+EL + FN +LE + ++ GI+ KGV + L
Sbjct: 428 IRQSGQNLLHIINDILDFSKVEAGKIELQKNRFNARSMLEATI-AFFKPGIREKGVTLSL 486
Query: 495 DPCDGSVLGS---CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIA 551
VL V GD +++QI NLV N++KFT +G I +R
Sbjct: 487 ------VLAEELPQAVVGDENRIRQIFFNLVGNAVKFTEKGKIELR-------------- 526
Query: 552 SNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFE 611
L L S E N + FE+ D+G GIP DKQ+SIFE
Sbjct: 527 -----------------------LTGLTS-EENSARMMLHFEIMDSGCGIPADKQDSIFE 562
Query: 612 EFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER 671
F Q +G GLGL IV+ ++ M G I + E G F FN+ ER
Sbjct: 563 RFTQAARFPTRTYQGTGLGLAIVKQLIEAMGGSIGVRSTE--GVGTTFFFNI----PVER 616
Query: 672 ERPDTDEEDP 681
P+ +DP
Sbjct: 617 ALPEEPAQDP 626
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 943 SLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHV 1002
+L + AQ E + G LV ED+ I L KLG + NG+EA D +
Sbjct: 617 ALPEEPAQDPDLGDELLVQGLSVLVTEDNPINRLFLQKSLEKLGHRVICAVNGQEALDLL 676
Query: 1003 CKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAG 1062
+ D ++MD +MPVM+G ATR IR E++ +P+IALTAHA+ G
Sbjct: 677 -----------QTATVDCVLMDIQMPVMDGSMATRHIR---ERFGHSLPVIALTAHALHG 722
Query: 1063 VASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
K ++ G D +L KP+ L ++ +
Sbjct: 723 DREKYLEDGFDEYLAKPVSIKDLTKIIARV 752
>gi|428318929|ref|YP_007116811.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428242609|gb|AFZ08395.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1315
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 145/271 (53%), Gaps = 36/271 (13%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA SH++R+ L AIIG ++ + E++ +I + LL ++N V+++SKIE
Sbjct: 847 LANMSHELRSPLNAIIGFAQVMIRSKTLSPENQEDVAIILRSGEHLLALINQVLDLSKIE 906
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQI 517
AG+ + E+ F+L QL++++ DM+ +KG+ ++ D D V ++ D VKL+Q+
Sbjct: 907 AGRTTINEKNFDLYQLIDDLEDMFALKAEQKGLQLIFD-RDAEV--PHYICTDEVKLRQV 963
Query: 518 LCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDA 577
L NL++N++KFTSEG +S++ + RN+ NK D L
Sbjct: 964 LINLLNNAIKFTSEGGVSMQ-----------VKGGRRNI----------HNKNSTDQL-- 1000
Query: 578 LHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSM 637
P FEV DTG GI ++ + +FE FVQ K T QEG GLGL I +
Sbjct: 1001 -------PGRYWLHFEVQDTGTGIAAEEIHQLFEAFVQTK-TGKDSQEGTGLGLAISRQF 1052
Query: 638 VHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
V LM GEI ++ E G +G F+F++ + V
Sbjct: 1053 VQLMGGEITVS-SEIG-KGAVFQFDIQVNLV 1081
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D + ++ +L LG + NGKEA D + L I M
Sbjct: 1106 RLLIVDDKPLNRQLLVKLLSPLGFELREANNGKEAVDIFMEWEPHL-----------IWM 1154
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM+G+EAT+ I+ I+ALTA + + I+ AG D + KP +++
Sbjct: 1155 DMRMPVMDGYEATKQIKTTTGGQAT--AIVALTASVLEEERAVILSAGCDDFMRKPFREE 1212
Query: 1084 KLL 1086
+
Sbjct: 1213 DIF 1215
>gi|381157023|ref|ZP_09866257.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380880886|gb|EIC22976.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 790
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 152/302 (50%), Gaps = 45/302 (14%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
++A E AER + +K+ LA SH++R L + G+++L + A G +LAE + + S
Sbjct: 399 IHAKEAAERANRSKSEFLATMSHEIRTPLNGVQGMLQLI-KAAELGPELAEYVDIAMESS 457
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
++LL ++N ++++SK+EAGK+ + + F+L LL + + KG+ + LD G
Sbjct: 458 QNLLTVINDILDLSKVEAGKITIDRDGFDLDALLRSIKATFTQQAASKGLTLDLDIAPGV 517
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
V GD ++L+Q+L NLV N++KFT +G + + V
Sbjct: 518 ---PAAVIGDAIRLRQVLFNLVGNAIKFTEQGAVRLDVRV-------------------- 554
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
D +DA H L+ F + DTG GIP D+ +F F QV ++
Sbjct: 555 -----------LDQIDARH--------LRLGFAITDTGIGIPADRIGELFSPFTQVDSSS 595
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
+G GLGL IV+ +V+LM G+I+I + PG+ G +F++ L + + TD
Sbjct: 596 TRRFKGTGLGLAIVKRLVNLMDGQISI-ESAPGQ-GTTVQFDIALGVAADADSITTDTAP 653
Query: 681 PR 682
R
Sbjct: 654 AR 655
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 12/157 (7%)
Query: 937 ISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGK 996
+++ S+ A + + P + LVV+D+ I KV + +LGK+G NG+
Sbjct: 640 VAADADSITTDTAPARRPVAPGPTTALRILVVDDEPINAKVVTMMLGKMGYTASSAVNGR 699
Query: 997 EAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE-EEQYDVHIPIIAL 1055
+A D + + P+D + MD MP M+G EATR IR D PIIAL
Sbjct: 700 QALDALSE-----------QPFDLVFMDISMPDMDGVEATRQIRANVAGNLDPSTPIIAL 748
Query: 1056 TAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
TAHAM G + + AGMD +L KP++ L +V++ +
Sbjct: 749 TAHAMKGDRERFLAAGMDDYLPKPVEAKALREVMQRV 785
>gi|300865281|ref|ZP_07110095.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
gi|300336754|emb|CBN55245.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
Length = 963
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 175/323 (54%), Gaps = 28/323 (8%)
Query: 358 LFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVE 417
L II++ + +++ A I A E A++ + K+ L+ SH++R L AI+G +
Sbjct: 399 LLIIMMDISDRKQ-----AEIAVQKAKEAADKANRAKSEFLSNMSHELRTPLNAILGFTQ 453
Query: 418 LCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEV 477
L D++ + E+LG+I + LL ++N++++MSKIE G++ + + F+L +LLE +
Sbjct: 454 LLARDSSLKFEQKEHLGIISRSGEHLLNLINNILQMSKIEVGQVTVNKNNFDLYRLLESI 513
Query: 478 VDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVR 537
M+ KK + +++D +V+ D KL+Q L N++ N++KFT EG +++R
Sbjct: 514 EKMFQLQAEKKNLQLIIDIAPDL---PQYVQTDESKLRQTLINILGNAIKFTQEGGVTLR 570
Query: 538 AAVKKKSFKQ---DIIASNRNVISKCLSKL------FFRNKEGFDDLDALHSVERNPNLL 588
+K+++ K+ + I+ N K L + +N+E + + S + N L
Sbjct: 571 VRMKEEAIKKKEDERISQKDNFPVKQLKSIDLEPIEIAKNQEKIYNWELTESTKNIKNSL 630
Query: 589 QF--------EFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHL 640
F +FE++DTG GI ++ +++F+ FVQ E+ + QEG GLGL I + V L
Sbjct: 631 CFSDDSSFFLQFEIEDTGLGIAPEEIDNLFKPFVQT-ESGMKAQEGTGLGLPISRQFVQL 689
Query: 641 MKGEIAIADKEPGERGVCFRFNV 663
M G+I + +G F+FN+
Sbjct: 690 MGGDITV--NSDINKGSIFKFNI 710
Score = 43.9 bits (102), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 12/72 (16%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIP-----IIALTAHAMAGVASKIVDAGMDFH 1075
I+MD MPVM+G+EAT+ I+ H+ IIALTA A S I+ G D
Sbjct: 786 ILMDMRMPVMDGYEATKRIK-------AHLKGQATVIIALTASAFDEERSIILSTGCDDF 838
Query: 1076 LTKPLQKDKLLD 1087
+ KP ++ +L+
Sbjct: 839 VAKPFREQVILE 850
>gi|254417361|ref|ZP_05031103.1| GAF domain protein [Coleofasciculus chthonoplastes PCC 7420]
gi|196175796|gb|EDX70818.1| GAF domain protein [Coleofasciculus chthonoplastes PCC 7420]
Length = 1321
Score = 137 bits (346), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 148/285 (51%), Gaps = 28/285 (9%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L AI+G ++ D+ + E LG+I + LL +LN V+EM
Sbjct: 809 KSEFLANMSHELRTPLNAILGFAQVMTRDSTLTSTQQEYLGIIARSGEHLLTLLNDVLEM 868
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEAG++ L E F+L +LL+ + +M KG+ ++ + CD V +VR D K
Sbjct: 869 SKIEAGRITLNETSFDLYRLLKSLEEMLQLKAASKGLQLIFN-CDSDV--PQYVRTDESK 925
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAV-------------KKKSFKQDIIASNRNVISKC 560
L+Q+L NL+ N++KFT EG +++ + + +R +++
Sbjct: 926 LRQVLINLLGNAIKFTGEGSVTLSVETCHGMSLGTSGNQSVEPGLTDKVTPLHRRAMARL 985
Query: 561 LSK--LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
+K LF G D+ A + NP L F V+DTG GI + +++FE F+Q E
Sbjct: 986 YTKPALF-----GERDIIAQSPIP-NPQSL-ITFAVEDTGPGIDSAELDTLFEAFIQT-E 1037
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
T QEG GLGL I Q V LM G IA++ +G FRF +
Sbjct: 1038 TGRKSQEGTGLGLPISQKFVQLMGGTIAVSSVLG--QGTTFRFTI 1080
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 15/108 (13%)
Query: 981 VLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040
++ +G + + NG++A + C+ P+ I MD MPVM+G+EATR IR
Sbjct: 1126 LIAPMGFEVQEAENGQQAVER-CQSWQ---------PH-LIWMDMRMPVMDGYEATRRIR 1174
Query: 1041 KE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLD 1087
+ + Q V IIALTA S ++ AG D ++KP Q++ + +
Sbjct: 1175 QSLQGQATV---IIALTASVFDKQRSVVLSAGCDDFVSKPFQEEVIFE 1219
>gi|297568082|ref|YP_003689426.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
AHT2]
gi|296923997|gb|ADH84807.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
AHT2]
Length = 661
Score = 137 bits (346), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 138/284 (48%), Gaps = 48/284 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP-GTDLAENLGLIRTC 439
++A E+AER S K+ LA SH++R L I+G+ +L D P G + + + R
Sbjct: 159 LSAKEEAERASQAKSEFLASMSHEIRTPLTTILGMADLL--DKTPLGAEQRQYVWASRAA 216
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
++LL ++N ++++SKIEAGK+E+ EF+L LL + ++ +KG++ C
Sbjct: 217 GENLLDLINGILDLSKIEAGKLEIEVMEFDLDHLLRQTCEIMALRAHQKGLEFT---CRL 273
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
S GSC V GD +++QIL NL+ N++KFT G ++V A
Sbjct: 274 SWQGSCLVLGDATRIRQILVNLIGNAIKFTERGKVTVEA--------------------- 312
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
E + F F V DTG GIP DKQ +FE+F QV +
Sbjct: 313 -----------------VRWPAEESAENTWFGFVVSDTGIGIPPDKQEMVFEDFAQVDSS 355
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V +M G I +A +E G RF V
Sbjct: 356 TSRRYGGTGLGLAISRKLVQMMGGTIRLASRE----GEGSRFTV 395
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRK-EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
YD +++D +MP M+G+ A R +R E EQ IPI+ALTAHA K +AG D H+
Sbjct: 475 YDLVLLDIQMPGMDGYAAARAMRAWEAEQGREAIPIVALTAHAFRDDIRKSREAGCDGHM 534
Query: 1077 TKPLQKDKLLDVVKS 1091
KP++ D L +++
Sbjct: 535 VKPIKMDDFLRTIRT 549
>gi|167998684|ref|XP_001752048.1| sensory histidine protein kinase, osmosensor [Physcomitrella patens
subsp. patens]
gi|162697146|gb|EDQ83483.1| sensory histidine protein kinase, osmosensor [Physcomitrella patens
subsp. patens]
Length = 1436
Score = 137 bits (346), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 106/338 (31%), Positives = 163/338 (48%), Gaps = 40/338 (11%)
Query: 335 SRNNKLSLMLLVLMFIAGVISLGL-FIILIAKAAKREMFLCAALIKQMNATEQAERKSMN 393
+R +SL LL + GV+ +G I L+ + + E L A + +Q A +AE
Sbjct: 543 TRITWISLPLLSI----GVVFIGCSLIYLLVEQVQAEEKLRAEIQRQSEAKCRAEASRDA 598
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL--------IRTCSKDLLG 445
KT L+ SH++R +A IIGL+++ L ENL + I C+ L+
Sbjct: 599 KTNFLSSMSHELRTPMACIIGLLDML---------LMENLTVEHEGSVRQIHRCATSLVS 649
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
+LNS ++++K+E+GK+ L + EFNL L ++D++ K + + LD +
Sbjct: 650 LLNSALDIAKVESGKLVLEKAEFNLEAELTALIDVFSVQCDNKNLFISLDLAESV---PA 706
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
+V GD ++ QI NL+ NS+KFTS+G I VR V +R S
Sbjct: 707 YVIGDSARVMQIFTNLIGNSIKFTSKGRIVVRGRVSNSESSSGSGKGHRRSFSPF----- 761
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
L+ P+ + FE+DDTG GI + +FE FVQ +
Sbjct: 762 --------SLERCTEEATVPDTVVLVFEIDDTGPGIEPALREKVFENFVQGNASTTRIHG 813
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGLGIV+S+V LM G I I +K G F+F++
Sbjct: 814 GTGLGLGIVRSLVQLMGGSIRIVEKTGA--GAVFQFSI 849
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 5/132 (3%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
KPL + LV ED ++ K+ +A+L +LGA NG+E + V R + P
Sbjct: 1216 KPLENLEILVAEDTPLLRKLAAAMLRRLGAVTYEASNGQEVLEAVMN-----RMQCGQSP 1270
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
++ I+MDC+MPVM+G+EA + IR+ E+ I+ALTA+AMA K + AGMD LT
Sbjct: 1271 FNCILMDCQMPVMDGYEACKAIREFEKDVTWRTSIVALTANAMASDEQKCLKAGMDAFLT 1330
Query: 1078 KPLQKDKLLDVV 1089
KP+ ++ ++ V+
Sbjct: 1331 KPIDQEYMVQVI 1342
>gi|440681237|ref|YP_007156032.1| GAF sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428678356|gb|AFZ57122.1| GAF sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1042
Score = 137 bits (345), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 145/281 (51%), Gaps = 42/281 (14%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E A+ + K+ LA SH++R L AI+G +L +D + D + +I +
Sbjct: 559 AKEAADAANRAKSEFLANMSHELRTPLNAILGFTQLMQQDKSLTIDYQRYIEIINQSGEH 618
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V+EMSKIEAG++ L + EF+L +LL + M+ KG+ + + CD SV
Sbjct: 619 LLALINDVLEMSKIEAGRISLYKTEFDLHKLLYSLEAMFLMKSQSKGIQLRFN-CDISV- 676
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
H++ D KL+Q+L NL+ N++KFT +G +S+R + ++SF D A N++
Sbjct: 677 -PQHIKTDENKLRQVLINLLGNAIKFTEKGSVSLRVS-SQESFTGD--AGRENILL---- 728
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
F ++DTG GI ++ + +F+ F Q +
Sbjct: 729 -----------------------------FAIEDTGPGIAVEELSDLFQAFQQT-QAGQR 758
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+EG GLGLGI Q V LM GEI++ K +G CF F++
Sbjct: 759 SKEGTGLGLGISQRFVQLMGGEISVTSKLG--QGSCFSFSI 797
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 16/143 (11%)
Query: 952 DGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRK 1011
D S P + ++ ED+A + S +L +LG + + NG+ A L +
Sbjct: 814 DHAISIVPGQHYRIMIAEDNATNRLLLSKILIRLGFEVKEAENGQIAIA--------LWQ 865
Query: 1012 EGKALPYDYIMMDCEMPVMNGWEATRLIRKEE-----EQYDVHIPIIALTAHAMAGVASK 1066
+ + P+ MD MP+++G++AT+ IR+ E EQ IIALTA A +
Sbjct: 866 QWQ--PH-LTFMDMHMPIIDGYQATQRIRQLEQELATEQSFTPTKIIALTASAFTEQRQE 922
Query: 1067 IVDAGMDFHLTKPLQKDKLLDVV 1089
+DAG D ++KP + +++L+++
Sbjct: 923 SLDAGCDDFVSKPFRWEEILEIL 945
>gi|434406889|ref|YP_007149774.1| signal transduction histidine kinase [Cylindrospermum stagnale PCC
7417]
gi|428261144|gb|AFZ27094.1| signal transduction histidine kinase [Cylindrospermum stagnale PCC
7417]
Length = 1055
Score = 137 bits (344), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 150/283 (53%), Gaps = 42/283 (14%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E A+ ++ K+ LA SH++R L AI+G +L +D + ++ +I +
Sbjct: 563 AKEAADAANLAKSEFLANMSHELRTPLNAILGFTQLMQQDQSLTSEHQRYTEIINQSGEH 622
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LLG++N V+EMSKIEAG++ L E EF+L +LL + M + KG+ + D D +V
Sbjct: 623 LLGLINDVLEMSKIEAGRITLSEIEFDLHKLLNSLFAMLQLKALSKGLQLSFD-YDATV- 680
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
C ++ D KL+Q+L NL+ N++KFT +G +++R ++ + Q
Sbjct: 681 PQC-IKTDENKLRQVLINLLGNAIKFTQQGSVTLR--IRNQESSQ--------------- 722
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
F +E +E P+ L FE V+DTG GI ++ ++F+ F ++T G
Sbjct: 723 ---FHKRE----------LESTPHTLLFE--VEDTGPGIAPEELGNLFQAF---QQTRAG 764
Query: 623 HQ--EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
Q EG GLGL I Q LM GEI ++ EPG +G CF F +
Sbjct: 765 QQSKEGTGLGLRISQKFAQLMGGEITVS-SEPG-KGSCFAFYI 805
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 16/131 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED + + +L +LG + + NG+ A L ++ + P+ I M
Sbjct: 835 RILIVEDHPANRLLLNTILSRLGFEVQEAENGQMAIA--------LWQQWR--PH-LIFM 883
Query: 1024 DCEMPVMNGWEATRLIRKEE-----EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D MP+++G+EA R IR E EQ IIALTA A A + +DAG D ++K
Sbjct: 884 DMYMPIIDGYEAARQIRNWEQKLADEQIFTPTKIIALTASAFADQRQESLDAGCDDFVSK 943
Query: 1079 PLQKDKLLDVV 1089
P + +++L+ +
Sbjct: 944 PFRWEEILETL 954
>gi|334134951|ref|ZP_08508452.1| PAS domain S-box protein [Paenibacillus sp. HGF7]
gi|333607453|gb|EGL18766.1| PAS domain S-box protein [Paenibacillus sp. HGF7]
Length = 874
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 105/333 (31%), Positives = 160/333 (48%), Gaps = 58/333 (17%)
Query: 346 VLMFIAGVI----SLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKA 401
VL IA +I ++G +II AK + + K M E AE + K LA
Sbjct: 457 VLTTIAPIIISEANVGYYII--AKDIREQK-------KLMIEKESAEATNKAKGEFLAMM 507
Query: 402 SHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKM 461
SH++R + A+IG+ +L E + ++ E L +IR LL I+N +++ SKIE+G
Sbjct: 508 SHEIRTPMNAVIGMTDLLLETTSLSSEQREYLNIIRKSGDTLLVIINDILDFSKIESGVT 567
Query: 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNL 521
ELVEE F++ + E VD+ I+K +++ C S + GD +LKQ+L NL
Sbjct: 568 ELVEEPFDIRTCILESVDLLTPKAIEKNLEMT---CALSQNMPSTLLGDAKRLKQVLINL 624
Query: 522 VSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSV 581
+ N++KFTS G+I V +VKK++ Q +
Sbjct: 625 IGNAVKFTSAGNIMV--SVKKQAHSQGTV------------------------------- 651
Query: 582 ERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLM 641
+ F+V DTG GIPK+K + +F+ F Q+ EG GLGL I + +V LM
Sbjct: 652 -------ELLFQVKDTGIGIPKEKADKLFQPFYQLDNFMTRETEGTGLGLAICKKLVQLM 704
Query: 642 KGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
G+I + ++P E G F F V+L P
Sbjct: 705 GGDIWV--EQPEEPGAHFLFTVVLKEAAREAVP 735
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 23/137 (16%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K LV ED+ I V +L G V NG E + YD + M
Sbjct: 752 KILVAEDNRINQLVLVKMLTNQGHTVRVVDNGSEVVEAAL-----------TERYDLVFM 800
Query: 1024 DCEMPVMNGWEATRLIRK--EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
D MP +NG +A R+I++ E+Y + I+A+TA+A+ G K + AGMD +++KP+
Sbjct: 801 DVHMPEINGLDAARMIKEALRPEEYPI---IVAVTANALKGDREKCLAAGMDDYISKPI- 856
Query: 1082 KDKLLDVVKSIDETMEK 1098
++++ET++K
Sbjct: 857 ------FSRTVNETIQK 867
>gi|242280141|ref|YP_002992270.1| cache sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
gi|242123035|gb|ACS80731.1| Cache sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
Length = 755
Score = 136 bits (342), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 151/291 (51%), Gaps = 47/291 (16%)
Query: 379 KQMNAT-EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+++NA E A + K+ LA SH++R + I+G +L +D++P D + + L+
Sbjct: 362 RKLNAAKENAVAANHAKSQFLAVMSHEIRTPMNVILGTTDLL-KDSHPRDDQKKYIKLLD 420
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
+ LL ++N +++MSK+EAG ++L +FN ++++ + ++ H +KG+++
Sbjct: 421 DAGEGLLALINDILDMSKVEAGLLDLESIDFNPSKIMRQSCSVFEHSASQKGIELACR-V 479
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
DG + G V+GD V++KQIL NL+ N++KFT G + V+A K+ +N NV
Sbjct: 480 DGKLPGL--VQGDPVRVKQILLNLIGNAVKFTDTGGVYVQAGYKQ--------LTNNNV- 528
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+ +FE+ DTG GIPKD+Q++IFE F Q
Sbjct: 529 -------------------------------ELKFEIQDTGPGIPKDRQHAIFEHFTQAD 557
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
+ +G GLGL I + + +M G+I ++ PG G F F + + V
Sbjct: 558 SSITREYQGTGLGLSISKKLCDMMNGKITVS-SSPGS-GSTFTFTITMKEV 606
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASKIVDAGMDFHLT 1077
D I MD EMPVM+G++AT IR E + +PIIAL+AHA+ G A +AG ++T
Sbjct: 672 DIIFMDIEMPVMDGYKATEEIRDWERIIGLSPVPIIALSAHAIKGTAEAAREAGCTSYMT 731
Query: 1078 KPLQKDKLLDVVK 1090
KP+ K + L+ ++
Sbjct: 732 KPITKLQFLERIE 744
>gi|428320626|ref|YP_007118508.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428244306|gb|AFZ10092.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1375
Score = 136 bits (342), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 140/275 (50%), Gaps = 40/275 (14%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L AI+G +L N + EN+ +I + LL ++N ++++
Sbjct: 912 KSTFLANMSHELRTPLNAILGFSQLMQRSTNLTREQQENIRIINRSGEHLLALINQILDL 971
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
+KIE G++ L +F L+ LL EV +M+ ++ + ++ D C + +V+ D++K
Sbjct: 972 AKIETGRITLNPTDFKLSSLLNEVEEMFQLQAREQQLQLIFD-CSSDI--PEYVQTDQLK 1028
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
L+Q+L NL+SN++KFT+EG I+VR ++ Q + N
Sbjct: 1029 LRQVLINLLSNAIKFTNEGGIAVRVRAVREGENQQLPIIN-------------------- 1068
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
Q FE++DTG GI D+ + +F+ FVQ T Q+G GLGL I
Sbjct: 1069 --------------YQLYFEIEDTGAGIAADELDKLFQAFVQTT-TGTKSQQGTGLGLAI 1113
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
Q V LM G I + + G G F F++ ++AV
Sbjct: 1114 SQQFVKLMGGVITVRSEVGG--GTTFAFDIPVSAV 1146
>gi|374622312|ref|ZP_09694838.1| multi-sensor hybrid histidine kinase [Ectothiorhodospira sp. PHS-1]
gi|373941439|gb|EHQ51984.1| multi-sensor hybrid histidine kinase [Ectothiorhodospira sp. PHS-1]
Length = 1126
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 146/285 (51%), Gaps = 46/285 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
++A E AE + K+ LA+ SH++R + AI+GL EL + P + + +I +
Sbjct: 578 ISAREAAESANQAKSEFLARMSHEIRTPMNAILGLSELVLLN-QPAGQSRDFMHIIEHSA 636
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL I+N ++++SKIEAG+MELVE +F+L Q+L EV++ KG+ + L+
Sbjct: 637 RHLLTIINDILDLSKIEAGRMELVEADFDLHQVLAEVIETLRVPAEDKGLALTLELAPDL 696
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+++GD +L Q+L NL+ N++KFT +G + ++ + C
Sbjct: 697 ---PRYLKGDAHRLTQVLINLIGNAVKFTQQGSVRLQ--------------------THC 733
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
L K R L+ FEV DTG+GIP ++ IF+ F QV +A
Sbjct: 734 LGKPDQR--------------------LRLAFEVIDTGEGIPPERHREIFQAFTQVDGSA 773
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + +V M GEI ++ + GE G FRF V +
Sbjct: 774 GRRHGGTGLGLTITRQLVEKMGGEITVSSRS-GE-GSTFRFTVAM 816
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 15/140 (10%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+P L+VED + V +L +LG + V N + AF ++ DL
Sbjct: 836 QPTRSWHVLLVEDTPANVVVAVHLLKRLGHRVTVADNAQAAFGYLTTDCPDL-------- 887
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRK-EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
++MD EMP +NG+EATR IR+ + + +P+IALTAHA++ + + AGM+ ++
Sbjct: 888 ---VLMDVEMPGINGFEATRRIRQGQAGEACRELPVIALTAHALSEYRERGLAAGMNDYI 944
Query: 1077 TKPLQKDKLLDVVKSIDETM 1096
KP+ L + ++ID M
Sbjct: 945 FKPI---SLAGLGQAIDRVM 961
>gi|373954442|ref|ZP_09614402.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
paludis DSM 18603]
gi|373891042|gb|EHQ26939.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
paludis DSM 18603]
Length = 936
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 157/316 (49%), Gaps = 60/316 (18%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
++ A E AE+ + K+ LA SH++R + ++G+ L E+ + E + I+
Sbjct: 404 QEQAAREDAEKANQAKSVFLATMSHEIRTPMNGVLGMASLL-EETTLNNEQREYVSTIKN 462
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
+ LL +++ V++ SKIE+GK++L +FNL Q +EEV+D++ + G+D+V
Sbjct: 463 SGETLLSVISDVLDFSKIESGKLDLDPHQFNLRQCIEEVMDIFSGKVARIGLDLVYQ--- 519
Query: 499 GSVLG---SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
+G H+ D ++LKQ+L NLV N++KFTS+G + + ++ ++
Sbjct: 520 ---IGYEVPAHIIADSLRLKQVLINLVGNAIKFTSKGEVFLGVSLLSRT----------- 565
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
DD HS+E FEV DTG GIP+DK +F+ F Q
Sbjct: 566 -----------------DD----HSLE-------LAFEVKDTGIGIPRDKLPRLFKAFSQ 597
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPD 675
+ + G GLGL I + +VHLM+G+I + + + G FRF++ + +
Sbjct: 598 IDSSTTRRYGGSGLGLAICERLVHLMEGQITVESQ--LDLGTTFRFSI---------KAE 646
Query: 676 TDEEDPRTHNDWPQTG 691
++D R H + G
Sbjct: 647 ESQQDIRLHVPYVLAG 662
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 81/147 (55%), Gaps = 21/147 (14%)
Query: 955 CSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK 1014
+ PLN LV ED+ I K+ +L KLG + V +NG E L++L K
Sbjct: 801 AEKHPLN---ILVAEDNLINQKLILRILSKLGYEATVAQNGLEVI-----ALTELHK--- 849
Query: 1015 ALPYDYIMMDCEMPVMNGWEATRLIR--KEEEQYDVHIPIIALTAHAMAGVASKIVDAGM 1072
+D I+MD +MP+M+G EAT++IR K E+ + IIA+TA+AM + AGM
Sbjct: 850 ---FDVILMDIQMPMMDGLEATQIIRSSKIEQPF-----IIAMTANAMPEDKEDCLKAGM 901
Query: 1073 DFHLTKPLQKDKLLDVVKSIDETMEKQ 1099
D +L+KP+ + L + +D T ++Q
Sbjct: 902 DDYLSKPIHLESFLTALSKVDITRQRQ 928
>gi|218888070|ref|YP_002437391.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218759024|gb|ACL09923.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 1228
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 151/301 (50%), Gaps = 24/301 (7%)
Query: 388 ERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGIL 447
E S K+ LA SH++R L AIIGL EL ++ PG D+AENL ++ LLGI+
Sbjct: 583 EEASRAKSEFLANMSHEIRTPLNAIIGLTELSLQERLPG-DVAENLRAALVSAEALLGIV 641
Query: 448 NSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHV 507
N ++++S++EAGK+ L +F A+L+ V+ + H +KG+ + L D V H+
Sbjct: 642 NDLLDLSRVEAGKLRLECIDFAPARLVRGVMRVMGHTAERKGLSLTLH-IDRDV--PRHL 698
Query: 508 RGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS---KCLSKL 564
RGD +L+Q+L N +SN++KFT EG + V AV + + A + + C L
Sbjct: 699 RGDPGRLRQVLVNFISNAIKFTDEGGVHV--AVCRSDGPDAVNAPEASGMGGGVTCAEPL 756
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
G DA + + + F V DTG GIP DK IFE F Q +
Sbjct: 757 ASGTVFG----DASSGLHTDGDTQWLCFSVRDTGIGIPDDKHELIFENFRQADASTARRY 812
Query: 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE--------RPDT 676
G GLGL I + +M G I + D PG+ G FR +L C+ + RPD
Sbjct: 813 GGSGLGLAICRKFTDMMGGRIVL-DSTPGQ-GSTFRV-LLPFGTCKADAPFVASNVRPDA 869
Query: 677 D 677
D
Sbjct: 870 D 870
>gi|334118365|ref|ZP_08492454.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333459372|gb|EGK87985.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1376
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 141/275 (51%), Gaps = 40/275 (14%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L AI+G +L N + EN+ +I + LL ++N ++++
Sbjct: 913 KSTFLANMSHELRTPLNAILGFSQLMQRSTNLNREQQENIRIINRSGEHLLALINQILDL 972
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
+KIEAG++ + F L+ LL ++ +M+ +++ + ++ D C V +V+ D++K
Sbjct: 973 AKIEAGRITINPTSFQLSSLLNDLEEMFQLQAMEQQLQLIFD-CSSEV--PEYVQTDQMK 1029
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
L+Q+L NL+SN++KFT +G I +R + Q + SN
Sbjct: 1030 LRQVLINLLSNAIKFTKQGVIKLRVSAFIDRENQQLPISN-------------------- 1069
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
Q FE++DTG GI D+ + +F+ FVQ K T Q+G GLGL I
Sbjct: 1070 --------------YQLHFEIEDTGAGIAADELDKLFQAFVQTK-TGTKSQQGTGLGLAI 1114
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
Q V LM G I + E G RG F F++ ++AV
Sbjct: 1115 SQQFVKLMGGVITVR-SEVG-RGTTFAFDIPVSAV 1147
>gi|153868900|ref|ZP_01998629.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
gi|152074529|gb|EDN71374.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
Length = 934
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 153/302 (50%), Gaps = 41/302 (13%)
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
L ++ AKR +L + A E AE + K+ LA SH++R L AI+G ++ H
Sbjct: 434 LESEVAKRTYWLKEKTTQLEQAKEIAEAANQAKSLFLANMSHELRTPLNAILGFAQIMHR 493
Query: 422 DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481
+ EN+ +I + LL ++N V++MSKIEAGK+ L E +L +LL+EV D++
Sbjct: 494 SQTLSQEHQENVNVINRSGEYLLSLINDVLDMSKIEAGKITLDETNIDLYRLLDEVHDLF 553
Query: 482 YHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541
Y K + + ++ D +V + G KL+Q+L NL+SN++KFT EG I +
Sbjct: 554 YLRAESKQLQLDIER-DNNVPRYLYTDGK--KLRQVLINLLSNALKFTQEGGIHLYI--- 607
Query: 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGI 601
N I+ LSK + + V EF+V DTG GI
Sbjct: 608 -------------NDITPPLSK------------ETMTEV-------ILEFQVRDTGPGI 635
Query: 602 PKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
+++ + +FE F Q T + QEG GLGL I + V LM G+I++ K GE G F F
Sbjct: 636 AENEMDKLFEAFTQTA-TGIASQEGTGLGLPISRKFVQLMGGDISVQSK-VGE-GTTFTF 692
Query: 662 NV 663
++
Sbjct: 693 SI 694
Score = 43.9 bits (102), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D ++ +L G + + NG+EA + + +I M
Sbjct: 725 RILIVDDKKDNRQLLIKLLNPFGFELQEVTNGQEAIEM-----------AENWQPHFIWM 773
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPV++G +AT+ I+ + + I I+ALTA + +I+ AG D L KP ++
Sbjct: 774 DIRMPVLDGLQATQQIKASYKGKE--IVIVALTASSQDEEREQILSAGCDDFLRKPFREF 831
Query: 1084 KLLDVV 1089
+ +++
Sbjct: 832 DIFELM 837
>gi|440746977|ref|ZP_20926238.1| hypothetical protein C943_0075 [Mariniradius saccharolyticus AK6]
gi|436484606|gb|ELP40582.1| hypothetical protein C943_0075 [Mariniradius saccharolyticus AK6]
Length = 1442
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 161/329 (48%), Gaps = 67/329 (20%)
Query: 357 GLFIILIA------KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLA 410
GL+ IA K A+RE+ L A E+AE+ S K+ L+ SH++R +
Sbjct: 1037 GLYYTGIARDITKLKEAQRELLL---------AKERAEQASTIKSQFLSIMSHEIRTPMN 1087
Query: 411 AIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNL 470
A+IG+ L ED NP D ENL ++ +++LLG++N +++ +KI++GK+EL + F L
Sbjct: 1088 AVIGMAHLLIED-NPRPDQLENLKTLQFSAENLLGLINDILDYTKIDSGKVELEKVSFEL 1146
Query: 471 AQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTS 530
+ + ++ Y + +K +DV+ + D ++ S + GD V+L Q++ NLVSN++KFT
Sbjct: 1147 ENVFQRILHSYSYQAREKALDVIFE-IDPAIPKS--LLGDPVRLGQVVNNLVSNAVKFTE 1203
Query: 531 EGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQF 590
+G+I ++ L +V + +
Sbjct: 1204 KGYIRIK----------------------------------------LSNVGEKKDRVSV 1223
Query: 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
F+ +DTG GIP++K + +FE F Q G GLGL IV+ +V L +I +
Sbjct: 1224 RFDFEDTGIGIPEEKLDLVFEAFTQASAATTRKYGGTGLGLAIVRRLVQLFGSDIKAYRR 1283
Query: 651 EPGERGVCFRFNVLLTAVCERERPDTDEE 679
+ G G F F + RP TDE+
Sbjct: 1284 QEG--GTRFTFTITFA------RPSTDEK 1304
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGA-KFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
L L+ ED+ + + L K G + + +G EA + K +
Sbjct: 1317 LQDANILIAEDNIVNQIMIKKFLTKWGVHQVVIANDGNEAIEAFSK-----------QDF 1365
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
+ I++D +MP +G++ IRK ++ +PIIALTA ++ V + + GM+ +++K
Sbjct: 1366 NIILLDLQMPEKDGFQVAEYIRKLKDPKKNQVPIIALTASSLIEVKEHLEEVGMNDYISK 1425
Query: 1079 PLQKDKL 1085
P D L
Sbjct: 1426 PFNPDHL 1432
>gi|171060737|ref|YP_001793086.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170778182|gb|ACB36321.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 1333
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 155/318 (48%), Gaps = 56/318 (17%)
Query: 359 FIILIA-----KAAKREMFLCAALIKQMNATE-QAERKSMNKTFALAKASHDVRASLAAI 412
FI++++ K A+++M AAL Q+ A +AE + K+ LA SH++R + AI
Sbjct: 649 FIVVVSDITEIKVAEQQM---AALNAQLAARAIEAEGATRAKSAFLANMSHEIRTPMNAI 705
Query: 413 IGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQ 472
IGL L D E LG I + +K LL I+N V+++SKI+AGK+ L + EFNL +
Sbjct: 706 IGLTHLMARDTRDSLQ-RERLGKIDSAAKHLLQIINDVLDLSKIDAGKLVLEDTEFNLDE 764
Query: 473 LLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG 532
+L ++ +KG+++VLD + H+RGD +L Q L NL++N++KFT G
Sbjct: 765 VLSRAFELVGESANEKGLELVLD----TDRLPSHLRGDPTRLSQALINLLANAVKFTHAG 820
Query: 533 HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEF 592
+ +R +++A +R + Q F
Sbjct: 821 WVRLRG---------ELLAEDRQRV-------------------------------QVRF 840
Query: 593 EVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEP 652
EV DTG+GI ++ S+F F Q + G GLGL + Q +V LM GE+ + EP
Sbjct: 841 EVQDTGEGIEPERFGSLFNAFEQADASTTRRHGGTGLGLALTQHLVTLMGGEMGV-RSEP 899
Query: 653 GERGVCFRFNVLLTAVCE 670
G G F F L E
Sbjct: 900 GV-GSTFWFTAWLGRAAE 916
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G++ L+ ED+ I +V + +L +G E +G A + C + YD I
Sbjct: 1078 GQRVLLAEDNPINQEVANELLQGVGLVVETAVDGASAVELAC-----------SRAYDLI 1126
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MD +MP M+G ATR IR + IPI+A+TA+A + +DAGM+ H+ KP+
Sbjct: 1127 LMDMQMPEMDGIAATRAIRA---RLGRAIPIVAMTANAFSEDRQACLDAGMNDHVAKPVD 1183
Query: 1082 KDKL 1085
L
Sbjct: 1184 PGTL 1187
>gi|428316967|ref|YP_007114849.1| PAS sensor protein [Oscillatoria nigro-viridis PCC 7112]
gi|428240647|gb|AFZ06433.1| PAS sensor protein [Oscillatoria nigro-viridis PCC 7112]
Length = 2171
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 136/267 (50%), Gaps = 36/267 (13%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A + AE + K+ LA SH++R L AI+G +L ++D N + ENL +I
Sbjct: 1667 AKDAAEAANKAKSTFLANMSHELRTPLNAILGFSQLMNQDTNLLNEQKENLNIIHRSGDH 1726
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V+++SK+EAG+M L E F L L E+ DM+ +G+ + + C V
Sbjct: 1727 LLTLINQVLDLSKVEAGRMTLSETNFELHHFLGEIEDMFALKAKSQGLQLRFE-CAVDV- 1784
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++R D VKL+Q+L NL+ N++KFT G +S+ VKK S +N S+
Sbjct: 1785 -PQYIRADEVKLRQLLINLIGNAIKFTPSGSVSL--VVKK---------SQKNAQSQ--- 1829
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
A + NP FEV DTG G+ D+ +F+ FVQ TA G
Sbjct: 1830 --------------AEIEITNNPQSTTITFEVKDTGVGMKPDELEKLFQPFVQ---TASG 1872
Query: 623 H--QEGLGLGLGIVQSMVHLMKGEIAI 647
Q+G GLGL I + V LM GEI +
Sbjct: 1873 QKVQQGTGLGLTISRQFVRLMGGEITV 1899
Score = 45.1 bits (105), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D ++ +L LG + + NG EA + L I M
Sbjct: 1962 RILVVDDKDDNRQLLVKLLKPLGFEVQEASNGIEALEIWDSYSPHL-----------IWM 2010
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPV++G+EAT+ I+ + +IALTA + I+ AG D + KP K+
Sbjct: 2011 DMRMPVIDGYEATKRIKTTIK--GQATAVIALTASVWEEEKAVILSAGCDDFVRKPFHKE 2068
Query: 1084 KLLDVV 1089
+ D++
Sbjct: 2069 VIFDIM 2074
>gi|170077312|ref|YP_001733950.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
7002]
gi|169884981|gb|ACA98694.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
7002]
Length = 774
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 150/298 (50%), Gaps = 55/298 (18%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+AE+ + K+ LA SH++R L+AI+G EL D N +D E+L +I ++
Sbjct: 376 AKEEAEKANQAKSQFLANMSHELRTPLSAILGFTELLTGDTNLTSDQLESLDIITQSAQH 435
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N ++ +SKIEAG+ ++ E FNL + L + D +K ++++ + D +V
Sbjct: 436 LLNLINDILSLSKIEAGETSVLREAFNLVEALNVIYDFVVLAAKQKQLELIFER-DANVP 494
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++ D KLKQ+L NL+SN++KFT G ++++ + + +Q++
Sbjct: 495 EVIYL--DEKKLKQVLINLLSNAIKFTEVGRVTLK--ITYDAHQQNL------------- 537
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
F V DTG GIP+ +QN +F+ F Q T +
Sbjct: 538 ----------------------------HFAVIDTGPGIPEHEQNKLFQVFQQTS-TGIR 568
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
++G GLGL I Q +V LM GEI + E +G CF F + L + P+ D+ D
Sbjct: 569 SRQGTGLGLAISQQLVQLMGGEIRVTTAE--NQGSCFWFELSLAS------PEKDQAD 618
>gi|78486517|ref|YP_392442.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
XCL-2]
gi|78364803|gb|ABB42768.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
XCL-2]
Length = 1410
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 154/299 (51%), Gaps = 47/299 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A EQAE S K+ LA SH++R + AIIG EL +E L + I+ K
Sbjct: 913 AKEQAESASQTKSQFLANMSHEIRTPMNAIIGFTELLNEQVTEPR-LKRYIRTIQAAGKT 971
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N ++++SKIEAGKM+L ++ N L +E+ ++ +KG+D ++D D ++
Sbjct: 972 LLTLINDILDLSKIEAGKMDLDKKAVNPHSLFDEIGQIFMINIQRKGLDFLVD-IDKTLP 1030
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ G V+L+QIL NL+ N++KFT +G++ ++ +S C
Sbjct: 1031 EGLLLDG--VRLRQILFNLLGNAVKFTEQGYVKLK-------------------VSAC-- 1067
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
D+D HS L +V DTG GIP+D+Q IF F Q + +
Sbjct: 1068 -----------DVDEHHSK------LDILIQVSDTGIGIPEDQQARIFNAFEQRENQDVQ 1110
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF---NVLLTAVCERERPDTDE 678
G GLGL I Q +V++M G+I + + PG+ G F +V ++A + ++P++DE
Sbjct: 1111 KFGGTGLGLAITQRLVNMMGGDIWV-ESTPGQ-GTTFNLLIHHVDISATNQSDQPNSDE 1167
Score = 49.3 bits (116), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MD MP+MNG++A +I+++ PI+ALTA M A D +L KP+
Sbjct: 1227 ILMDLRMPIMNGYQAAEIIKQKSPS----TPIVALTASVMTETADAPKRQHFDDYLRKPV 1282
Query: 1081 QKDKLLDVVK 1090
K L +++K
Sbjct: 1283 FKADLFNILK 1292
>gi|440682866|ref|YP_007157661.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428679985|gb|AFZ58751.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 996
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 152/294 (51%), Gaps = 45/294 (15%)
Query: 359 FIILIAKAAKREMFLCAALIKQM---NATEQAERKSMNKTFALAKASHDVRASLAAIIGL 415
F I +A+ + + L A Q+ A EQAE + K+ LAK SH++R L AI+G
Sbjct: 492 FEIEVAQEMRNSLMLAALEFSQLALQQAAEQAEIANRAKSQFLAKMSHELRTPLNAILGF 551
Query: 416 VELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLE 475
++ +++ + ENL +I + LL ++N V+EMSKIEAG++ L E F+L +L+
Sbjct: 552 TQILTRNSSLSEEDRENLEIISRSGEHLLALINDVLEMSKIEAGQLTLNESYFDLHRLIY 611
Query: 476 EVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHIS 535
+ +M+ KG++++ + S S +V GD KL+QIL NL++N++KFT G+++
Sbjct: 612 SIQEMFALKAADKGLNLI---TEFSTEVSQYVFGDEGKLRQILINLMANAIKFTISGYVA 668
Query: 536 VRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVD 595
+R S+ QD + S+ + EF+V+
Sbjct: 669 IRV-----SYPQDFV-----------------------------SLAVEIGKVTVEFKVE 694
Query: 596 DTGKGIPKDKQNSIFEEFVQVKETALGHQ--EGLGLGLGIVQSMVHLMKGEIAI 647
DTG GI + Q IFE F+Q K+ G Q +G GLGL I + MKG++ +
Sbjct: 695 DTGGGIAVEDQELIFEAFLQAKD---GRQFMQGTGLGLAISRQFARHMKGDVRV 745
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 17/126 (13%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVC--RNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
K L+VED ++ +L +G F+VC NG EA + + KE + D I
Sbjct: 790 KILIVEDILENRQLIVKLLKYVG--FDVCAVENGLEAIE--------IYKEWEP---DLI 836
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD +MPVMNG+EAT+ IR + + IIALTA A I+ G D + KP +
Sbjct: 837 WMDIQMPVMNGYEATKKIRAMAQ--GKKLMIIALTASAFEEDKKAILQVGCDDIVAKPFE 894
Query: 1082 KDKLLD 1087
++ L +
Sbjct: 895 ENILFE 900
>gi|381197114|ref|ZP_09904455.1| GacS-like sensor kinase protein [Acinetobacter lwoffii WJ10621]
Length = 937
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 139/298 (46%), Gaps = 46/298 (15%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA S +K+ LA SH++R L +I G + L N D L IR
Sbjct: 273 ITYRQARDQAISASQSKSVFLANISHELRTPLNSIDGFIHLLLRQDNLNNDQNLYLQTIR 332
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K +D+
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELDTATFDLEEAIFDVMDMLSPLAAQKHIDMAFYYA 392
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D HV GD ++ KQIL NL+SN++KFT +G I VRA +++ I
Sbjct: 393 DNV---PKHVVGDALRFKQILTNLISNAIKFTPDGEIIVRARMEQDD------------I 437
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 438 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 469
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERE 672
+ G GLGL I + +VHLM+G+I D + P E+G F F + E E
Sbjct: 470 ASVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFMVNEEDE 527
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 7/120 (5%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G L V+D L V A+LG+L K +G++A + IL + R E + +D +
Sbjct: 664 GLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQQALE----ILQE-RAEHDSKAFDLV 718
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVH--IPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
MD +MPVM+G + TR IR E + H +PIIALTAHA+A K++ GMD ++TKP
Sbjct: 719 FMDIQMPVMSGVDTTRAIRALESTIENHKRLPIIALTAHALADEKQKLLQVGMDDYVTKP 778
>gi|300867491|ref|ZP_07112142.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300334485|emb|CBN57310.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 1231
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 147/286 (51%), Gaps = 27/286 (9%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E A+ + K+ LA SH++R L AI+G +L + D + T+ + L +I +
Sbjct: 736 AKESADAANSAKSEFLANMSHELRTPLNAILGFSQLMNRDRSLSTEYIQYLNIINRSGEH 795
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N ++EMSKIEAG+M L E EF+L LL+ + DM K + + D +V
Sbjct: 796 LLELINDILEMSKIEAGRMVLYENEFDLYNLLDNLEDMLQLKAQSKALKLTFQR-DKTV- 853
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
V+ D+ KL+QIL NL+ N++KFT +G++ +R V + + N N+ S
Sbjct: 854 -PKFVKTDQSKLRQILINLIGNALKFTEKGNVILRVKVAGRERSNNEQKENTNIPSS--- 909
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
FF P+ +FEV+DTG GI + + +FE F Q T L
Sbjct: 910 --FF----------------LLPSSFFLQFEVEDTGPGIAPEDFDKLFEAFGQTA-TGLK 950
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
+G GLGL I Q V LM GEI ++ + +G F F++ ++V
Sbjct: 951 SGQGTGLGLPISQKFVQLMGGEITVSSQLG--QGAKFTFDIQASSV 994
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I MD MPV++G+EAT+ IR + + + IIALTA I+ AG D + KP
Sbjct: 1066 IWMDMRMPVIDGYEATKKIRAQSKSRET--VIIALTASVFEEEQQLILSAGCDDMVRKPF 1123
Query: 1081 QKDKLL 1086
++ +LL
Sbjct: 1124 KEQELL 1129
>gi|428318926|ref|YP_007116808.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
gi|428242606|gb|AFZ08392.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
Length = 856
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 155/295 (52%), Gaps = 30/295 (10%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ +A SH++R L +I+G ++ + + EN+ +IR + LL ++N V+++
Sbjct: 322 KSTFIANMSHELRTPLNSILGFAQIMEPSPDLTVENRENMRIIRRSGEHLLTLINEVLDL 381
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMY--------YHVGIKKGVDVVLDPCDGSVLGSC 505
SKIEAG+M L + F+L +LL+++ DM+ + ++ DV
Sbjct: 382 SKIEAGRMTLNPKNFDLYRLLDDLQDMFQLRVHNEELQLHFQRDADV-----------PQ 430
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS-KL 564
+VR D +KL+Q+L NL+SN++KFT G I +R +KS D++ S + S +
Sbjct: 431 YVRTDDIKLRQVLINLLSNAIKFTQTGEIILRVIKLEKSGFLDLLDSPKACFDTTRSIRD 490
Query: 565 FFRNKEGFDDLDALHSVERN--PNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
F R F ++ E + P+ FE++DTG GI ++ +IF+ FVQ TA G
Sbjct: 491 FSRTSSDFAKVECSDEAEDSTVPDFFLL-FEIEDTGVGIASEELGNIFKAFVQ---TASG 546
Query: 623 H--QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPD 675
Q+G GLGL I + V LM GEI + + E G F+F + + AV + PD
Sbjct: 547 QKIQKGTGLGLKISRQFVRLMGGEIVVESQ--LELGTTFKFEIPVGAVYAADIPD 599
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 27/142 (19%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D ++ +L LG E NG+EA + L I+M
Sbjct: 617 RILIVDDREDNRQLLVKMLSPLGFGVEQATNGQEAIELWENWHPHL-----------ILM 665
Query: 1024 DCEMPVMNGWEATRLIRKE---------------EEQYDVHIP-IIALTAHAMAGVASKI 1067
D MPVM+G+EAT+ I+ ++ + IP IIALTA + G +
Sbjct: 666 DVRMPVMDGYEATKQIKARIKQREQEQQEKEEMNLDEPESPIPKIIALTASTIEGRQAFA 725
Query: 1068 VDAGMDFHLTKPLQKDKLLDVV 1089
+ G D ++KP +K + D +
Sbjct: 726 LLVGCDDFISKPFRKTDIFDTI 747
>gi|428320948|ref|YP_007118830.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
gi|428244628|gb|AFZ10414.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
Length = 955
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 155/299 (51%), Gaps = 23/299 (7%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++AE + K+ LA SH++R+ L AI+G +L + EN+ +IR+ +
Sbjct: 433 AKDKAEVANQAKSTFLANMSHELRSPLNAILGFSQLMTRSQTLSPEHQENISIIRSSGEH 492
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N+V+++SKIE+G+ L + +L +LL ++ DM+ K + +V D
Sbjct: 493 LLTLINNVLDLSKIESGRTTLNPHKIDLYRLLNDLEDMFQLKAHDKQLQLVFDRSPDV-- 550
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++ D +KL+QIL NL++NS+KFT EG ++VR V K+S ++ N +
Sbjct: 551 -PQYIETDELKLRQILINLLNNSLKFTHEGGVAVR--VSKQSLGRNQQPEGGNFEPSEVP 607
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQ-------------FEFEVDDTGKGIPKDKQNSI 609
K +D+ + N ++ FEV+DTG GI ++ + I
Sbjct: 608 K--STENSAINDIKISQICQSNNQIIATPNDDAASTSSFFLHFEVEDTGPGIATNELDDI 665
Query: 610 FEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
FE FVQ K T QEG GLGL I + V LM GE+++ +G F+F++ + AV
Sbjct: 666 FEPFVQTK-TGKDSQEGTGLGLPISRQFVELMGGEMSVCSAVG--KGTNFKFDIQVIAV 721
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D + ++ +L LG + + NG+EA + I P+ I M
Sbjct: 746 RILIVDDKQLNRQLLIKILSPLGFELKEATNGQEAIE----IWDSWE------PH-LIWM 794
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM+G+EAT+ I++ + IIALTA + + I+ AG D L KP ++
Sbjct: 795 DMRMPVMDGYEATQYIKRTIKGQAT--AIIALTASVLEEERAVILSAGCDAFLRKPFREA 852
Query: 1084 KLLDVV 1089
+ D +
Sbjct: 853 DIFDAM 858
>gi|262369862|ref|ZP_06063189.1| sensor protein gacS [Acinetobacter johnsonii SH046]
gi|262314901|gb|EEY95941.1| sensor protein gacS [Acinetobacter johnsonii SH046]
Length = 937
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 139/298 (46%), Gaps = 46/298 (15%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA S +K+ LA SH++R L +I G + L N D L IR
Sbjct: 273 ITYRQARDQAISASQSKSVFLANISHELRTPLNSIDGFIHLLLRQDNLNNDQNLYLQTIR 332
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K +D+
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKIELDTATFDLEEAIFDVMDMLSPLAAQKHIDMAFYYA 392
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D HV GD ++ KQIL NL+SN++KFT +G I VRA +++ I
Sbjct: 393 DNV---PKHVVGDALRFKQILTNLISNAIKFTPDGEIIVRARMEQDD------------I 437
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 438 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 469
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERE 672
+ G GLGL I + +VHLM+G+I D + P E+G F F + E E
Sbjct: 470 ASVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFMVNEEDE 527
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G L V+D L V A+LG+L +G++A + IL + R E + +D +
Sbjct: 664 GLHILAVDDHLPNLIVLEALLGELNVTTTKALSGQQALE----ILQE-RAEHDSKAFDLV 718
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVH--IPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
MD +MPVM+G + TR IR E + H +PIIALTAHA+A K++ GMD ++TKP
Sbjct: 719 FMDIQMPVMSGVDTTRAIRALESTIENHKRLPIIALTAHALADEKQKLLQVGMDDYVTKP 778
>gi|428311457|ref|YP_007122434.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428253069|gb|AFZ19028.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 716
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/313 (32%), Positives = 162/313 (51%), Gaps = 29/313 (9%)
Query: 364 AKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA 423
A AK E L + A E AER + K+ LA SH++R L AI+G +L D+
Sbjct: 167 AALAKTEAELRQSEATMQEAKEAAERANRAKSQFLANMSHELRTPLNAILGFTQLLIRDS 226
Query: 424 NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYH 483
+ + E++ +I + LL ++N V++MSKIE GK+ L ++ F+L +LL+ + M+
Sbjct: 227 SLTIEQRESIEIINRSGEHLLELINDVLQMSKIEVGKVTLDQQSFDLYRLLDSLEAMFQL 286
Query: 484 VGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKK 543
KKG+ ++ D G HV+ D KL+Q+L NL+ N++KFT+ G +++R + K K
Sbjct: 287 PAQKKGLQLIFDYAPGL---PQHVQTDENKLRQVLINLLGNALKFTAFGSVTLRVSRKLK 343
Query: 544 SFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPK 603
+ S+ + K F+ + + P L F V+DTG GI
Sbjct: 344 -----VEGSHELQVEK------------FNVESSTPPLNLQPVTLY--FAVEDTGPGIEP 384
Query: 604 DKQNSIFEEFVQVKETALGHQ--EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
+ + IFE F+Q TA+G + EG GLGL I + V LM G+I + + G +G F+F
Sbjct: 385 EDLDLIFEAFIQ---TAIGRKSSEGTGLGLPISRKFVQLMGGDITV-NSTLG-KGTIFQF 439
Query: 662 NVLLTAVCERERP 674
V ++ E P
Sbjct: 440 EVQVSLSSATEIP 452
Score = 41.6 bits (96), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 29/142 (20%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D + +L LG + + NG+EA + + L I M
Sbjct: 471 RILVVDDAPESRLLLVKLLAALGFEVQEAVNGQEALEQWNRFQPHL-----------IWM 519
Query: 1024 DCEMPVMNGWEATRLIRKEEEQ----------YDVHIP--------IIALTAHAMAGVAS 1065
D MP+++G+EAT+ I+ E++ +V P IIALTA A
Sbjct: 520 DMRMPILDGYEATQQIKAREQERGKDGKSTQGREVIHPSAPIGKTVIIALTASAFEEERH 579
Query: 1066 KIVDAGMDFHLTKPLQKDKLLD 1087
+V G D + KP +++ + D
Sbjct: 580 LVVSVGCDDFVRKPFREEMIFD 601
>gi|430761683|ref|YP_007217540.1| PAS protein [Thioalkalivibrio nitratireducens DSM 14787]
gi|430011307|gb|AGA34059.1| PAS protein [Thioalkalivibrio nitratireducens DSM 14787]
Length = 1324
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 140/285 (49%), Gaps = 48/285 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
+A EQAE + K+ LA SH++R L AI+GL L D +A L I +
Sbjct: 708 DAREQAEAANRAKSAFLANMSHEIRTPLNAIVGLTHLLRRDGVRPEQVA-RLDRIDNAGR 766
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL I+N ++++SKIEAG++EL +F+L+ +L+ V + +KG+ + +DP V
Sbjct: 767 HLLSIINDILDLSKIEAGRLELETTDFHLSAILDNVASIIGDPAREKGLAIEIDPDAVPV 826
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+RGD +L+Q L N N++KFT G I++RA
Sbjct: 827 W----LRGDPTRLRQALLNYAGNAVKFTDAGSITLRA----------------------- 859
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIF-EEFVQVKETA 620
+L N++G LQ FEV DTG G+P+ + +F E+F QV
Sbjct: 860 -ELLEENEQG----------------LQVRFEVVDTGIGVPEGELQRLFHEDFAQVANAG 902
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ G GLGL IV+ + +M GE+ AD EPG G F F V L
Sbjct: 903 DRARGGTGLGLSIVRRLAEMMGGEVG-ADSEPGT-GSRFWFTVRL 945
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 19/127 (14%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G + L+ ED+ I +V +L +G + +G+EA + + YD +
Sbjct: 973 GARVLLAEDNPINREVALELLHAVGFAVDTADDGREAVHKAQEQV-----------YDLV 1021
Query: 1022 MMDCEMPVMNGWEATRLIRK---EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
+MD +MP M+G EA RLIR E Q PI+A+TA+A AGMD L K
Sbjct: 1022 LMDLQMPQMDGLEAARLIRALPGWERQ-----PILAMTANAFEEDRKACEQAGMDGFLPK 1076
Query: 1079 PLQKDKL 1085
P+ + L
Sbjct: 1077 PVDPEDL 1083
>gi|334117198|ref|ZP_08491290.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333462018|gb|EGK90623.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1314
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 143/266 (53%), Gaps = 37/266 (13%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA SH++R+ L A+IG ++ + E++G+I + LL ++N V+++SKIE
Sbjct: 847 LANMSHELRSPLNAVIGFAQVLIRSQTLSQENQEDVGIILRSGEHLLALINQVLDLSKIE 906
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQI 517
AG+ L + F+L QL++++ DM+ +KG+ ++ D D V ++ D VKL+Q+
Sbjct: 907 AGRTTLNAKSFDLYQLIDDLEDMFALKAEQKGLQLIFDR-DAEV--PHYICTDEVKLRQV 963
Query: 518 LCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDA 577
L NL++N++KFTSEG +SV+ ++++ ++
Sbjct: 964 LINLLNNAIKFTSEGGVSVQVKGERRNIHKN----------------------------- 994
Query: 578 LHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSM 637
S ++ P+ FEV DTG GI ++ + +FE FVQ K T EG GLGL I +
Sbjct: 995 --STDQLPSPYWLHFEVQDTGAGIAAEEIHQLFEAFVQTK-TGKDSHEGTGLGLAISRQF 1051
Query: 638 VHLMKGEIAIADKEPGERGVCFRFNV 663
V LM GEI ++ E G +G F+F +
Sbjct: 1052 VQLMGGEITVS-SEIG-KGALFQFYI 1075
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D + ++ +L LG + NGKEA D + L I M
Sbjct: 1105 RLLIVDDKPLNRQLLVKLLSPLGFELREANNGKEAVDIFMEWEPHL-----------IWM 1153
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM+G+EAT+ I+ I+ALTA + + I+ AG D + KP +++
Sbjct: 1154 DMRMPVMDGYEATKQIKTTTGGQAT--AIVALTASVLEEERAVILSAGCDDFMRKPFREE 1211
Query: 1084 KLL 1086
+
Sbjct: 1212 DIF 1214
>gi|428304383|ref|YP_007141208.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
gi|428245918|gb|AFZ11698.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
Length = 1246
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 142/281 (50%), Gaps = 43/281 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E A + K+ L+ SH++R L I+G +L + N + EN+ +I +
Sbjct: 839 AKEAAVAANHAKSTFLSNMSHELRTPLNIILGFTQLMVKSDNLSPEHLENINIINRSGEH 898
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V++M+KIE+G + L E FNL QLL+E+ M+ KG+++++D
Sbjct: 899 LLNLINDVLDMAKIESGSVTLNERNFNLYQLLDELETMFRLKTNDKGLELIVDRSANVPE 958
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
C D +KL+Q+L NLV+N++KFT +G IS++ +
Sbjct: 959 CVC---TDDIKLRQVLINLVNNALKFTQQGSISIQVGLA--------------------- 994
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
DD D RN N +F F + DTG GIP D+ IF+ F Q T
Sbjct: 995 ----------DDRD------RNSNKSRFNFAITDTGAGIPGDELEKIFQPFQQTI-TGKT 1037
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+EG GLGL I Q +++M G+I ++ E G RG F+F++
Sbjct: 1038 AKEGTGLGLTISQKFINMMGGKITVS-SEVG-RGSIFKFDI 1076
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 23/136 (16%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ +D + + S V+ +LG + +G E V +I S + P+ I M
Sbjct: 1107 RILIADDTTVNRLLLSMVISQLGLDIKEAGDGME----VLEIWSQWQ------PH-LIFM 1155
Query: 1024 DCEMPVMNGWEATRLIR-KEEEQYDVH-----------IPIIALTAHAMAGVASKIVDAG 1071
D +MPVM+G EAT+ IR KE+E + + I+ALTA I+ AG
Sbjct: 1156 DIQMPVMDGVEATQKIRIKEQETWQLEQINNRQVSPHKTVIVALTASIFEEERIAIMSAG 1215
Query: 1072 MDFHLTKPLQKDKLLD 1087
D ++KP Q + ++D
Sbjct: 1216 CDDFISKPFQLENIID 1231
>gi|300868943|ref|ZP_07113548.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
gi|300333066|emb|CBN58740.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
Length = 1739
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 105/333 (31%), Positives = 166/333 (49%), Gaps = 39/333 (11%)
Query: 350 IAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQA----ERKSMNKTFALAKASHDV 405
I VI +G + ++ + A+ L A KQ A +QA + + K+ LA SH++
Sbjct: 1202 INTVIQIGTQLGVVLQQAE----LLAQTQKQSVALQQAAIAADTANRAKSEFLAAMSHEL 1257
Query: 406 RASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVE 465
R L AI+G ++ D ENLG+I + LL ++N ++EMSKIEAG+ EL
Sbjct: 1258 RTPLNAILGFTQVMSRDPTLNQQQQENLGIINRAGEHLLNLINDILEMSKIEAGQAELNL 1317
Query: 466 EEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNS 525
F+L LL + +M KG+ ++ D +V+ D KL+QIL N++ N+
Sbjct: 1318 SNFDLIGLLFSLEEMLRLKAESKGLHLIFDIAPDV---PQYVQADEGKLRQILINILGNA 1374
Query: 526 MKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNP 585
+KFT +G +++R K+ IA+N ++ + + D + S+
Sbjct: 1375 VKFTEKGSVTLRVRNKE-------IATNASISDR------------LELTDRVESINYPS 1415
Query: 586 NLLQ------FEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVH 639
+LL +FEV DTG GI ++ N +FE F Q ET Q+G GLGL I Q V
Sbjct: 1416 SLLPITSSLCLQFEVKDTGPGISPEEINQLFEAFTQT-ETGRKSQQGSGLGLPISQKFVQ 1474
Query: 640 LMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
LM G+IA+ + + G F F++ + V R+
Sbjct: 1475 LMGGDIAV--RSILKWGTAFTFDIPVIMVEARD 1505
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCR--NGKEAFDHVCKILSDLRKEGKALPYDYI 1021
+ LVVED + A++ +G FEVC NG+EA + L I
Sbjct: 1526 RILVVEDRYENRLLLVALIRAIG--FEVCEAENGREAIELWSNWEPHL-----------I 1572
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD MPVM+G+EAT+ I+ +E II +TA A S+++ AG D + KP +
Sbjct: 1573 WMDMRMPVMDGYEATKYIKDKEHLRGQKTVIIGITASAFEEERSQVLSAGCDDFVRKPFR 1632
Query: 1082 KDKLLDVV 1089
+ +L+++
Sbjct: 1633 DEAILEMM 1640
>gi|440683155|ref|YP_007157950.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428680274|gb|AFZ59040.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 934
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 151/313 (48%), Gaps = 43/313 (13%)
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
L+ + K+ + L AL+ A+ + K+ LA SH++R L AI+G +
Sbjct: 439 LLERTQKQSIALQQALLD-------ADAANRAKSEFLANMSHELRTPLNAILGFTHILSR 491
Query: 422 DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481
D + T+ E +G+I + LL ++N ++EMSKIEAG+ L E FNL +E + M
Sbjct: 492 DNSLSTEHQEEIGIINRAGEHLLTLINDILEMSKIEAGRTILNENSFNLIVFIENLQKML 551
Query: 482 YHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541
KG+ ++ + D S+ +VR D KL+QIL NL+ N++KFT+ G + +R +
Sbjct: 552 QLKAESKGLQLIFN-YDQSL--PLYVRTDEGKLRQILLNLLGNAIKFTTNGSVELRVKAR 608
Query: 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGI 601
F + KE + E+ N FEV+DTG GI
Sbjct: 609 -----------------------FLKQKENLKN-------EKLANSYNISFEVEDTGHGI 638
Query: 602 PKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
++ NSIFE F Q + + +Q+G GLGL I + V LM G+I ++ + G F F
Sbjct: 639 ASEEINSIFEPFKQTVK-GIQYQQGTGLGLAISRKYVQLMGGDIQVSSRLG--LGSLFLF 695
Query: 662 NVLLTAVCERERP 674
+ + E P
Sbjct: 696 EIPIYEASANEIP 708
>gi|428769506|ref|YP_007161296.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
gi|428683785|gb|AFZ53252.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
Length = 1390
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 139/274 (50%), Gaps = 52/274 (18%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA--NPGTDLAENLGLIRTCS 440
A EQAE+ + K+ LA SH++R + A+IG+ L + N + AE +IRT +
Sbjct: 703 AKEQAEKANQAKSEFLATMSHEIRTPMNAVIGMTGLLLDTPLNNEQREFAE---IIRTSA 759
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCD 498
LL I+N +++ SKIE+GK+EL + ++ ++EE +D+ I KG++++ + P
Sbjct: 760 DSLLTIINDILDFSKIESGKLELEYQPLSIINVIEESLDLLAPKAINKGIELIYFIAPDI 819
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
+ GD +L+QIL NL++N++KFT+EG I V V ++S K+
Sbjct: 820 PKT-----IMGDVTRLRQILVNLLNNAVKFTNEGEIVVSVGVSRQSIKE----------- 863
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFE--FEVDDTGKGIPKDKQNSIFEEFVQV 616
N+L++E F V DTG GIP + N +F+ F QV
Sbjct: 864 ---------------------------NILEYELIFSVKDTGIGIPSSRMNKLFKPFSQV 896
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
+ H G GLGL I +V +M G+I + K
Sbjct: 897 DASTTRHYGGTGLGLAICNRLVTMMGGQIWVESK 930
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 16/137 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+ ED+ + KV + +L +LG + +V NG E ++ L ++ YD I+M
Sbjct: 1127 KILIAEDNIVNQKVITNILKRLGYRADVVANGLE-------VMETLNRQS----YDLILM 1175
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVH---IP--IIALTAHAMAGVASKIVDAGMDFHLTK 1078
D +MP M+G ATR IR + + IP IIA+TA+AM G + AGMD +L+K
Sbjct: 1176 DVQMPEMDGLTATRQIRTLWNSPNSNFQGIPPYIIAMTANAMEGDREICLAAGMDDYLSK 1235
Query: 1079 PLQKDKLLDVVKSIDET 1095
P++ +KL++ +K++ +T
Sbjct: 1236 PVRVEKLMEKLKNLRKT 1252
Score = 40.4 bits (93), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 882 SRLIEVL--KLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISS 939
+RL+ ++ ++ E KG +FP +S Q P + L G+ +I++
Sbjct: 915 NRLVTMMGGQIWVESKGVIAGDFP-----SSYQ---------PNSSLSDLGSIFSFTINT 960
Query: 940 HCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAF 999
SS + L K L+V+D+ I +V LG K + +G+EA
Sbjct: 961 KVSSW---LVNQENPSYSHILQDKVILIVDDNEINRQVLMIQCHNLGMKTIITASGREA- 1016
Query: 1000 DHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHA 1059
L L+ E K D ++D +MP M+G + IR + ++P+I L++
Sbjct: 1017 ------LLALKNEQKP---DLAVLDMQMPGMDGLTLAKQIRLLP--HCQNLPLILLSSIG 1065
Query: 1060 MAGVASKIVDAGMDFHLTKPLQKDKLLDV 1088
A + + + LTKP+++ L D+
Sbjct: 1066 SAEIQKSLQEVDWAATLTKPIKQSLLEDI 1094
>gi|452853017|ref|YP_007494701.1| putative Histidine kinase [Desulfovibrio piezophilus]
gi|451896671|emb|CCH49550.1| putative Histidine kinase [Desulfovibrio piezophilus]
Length = 1485
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 52/283 (18%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLI 436
+ A E AE S +K+ LA SH+VR L ++G+++L TDL E +
Sbjct: 1095 LKAKELAEAASQSKSEFLANMSHEVRTPLNGVLGMLQLAQT-----TDLTEEQRDYVDTA 1149
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
+ + LL I+N +++ SKIEAGK+E+V E F+ +QL+++V+ + KG+D+VLD
Sbjct: 1150 LSSGRSLLSIINDILDFSKIEAGKLEVVTEPFSFSQLVQDVLMTFRGQARNKGIDLVLDL 1209
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
D + G + +L+QIL NLV N +KFT++GH+ + A + ++
Sbjct: 1210 PDEI---PEPLVGGKGRLRQILFNLVGNGVKFTTDGHVGIFAQILRQ------------- 1253
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
+R+ L V+DTG GIP DK IFE F QV
Sbjct: 1254 -------------------------KRDAGTLLLLICVEDTGIGIPDDKIEDIFEPFTQV 1288
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
+ + +G GLGLGIV+ +V L+ G + I D E G RG
Sbjct: 1289 DGSYVRQHQGTGLGLGIVKRLVDLLNGTLTI-DTEEG-RGTAL 1329
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 14/139 (10%)
Query: 949 AQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSD 1008
A+S G ++ +GK+FLVVED+ + + + +L KLG +V +G EA L
Sbjct: 1343 AESLGNFPDRS-SGKRFLVVEDNRVNRILAARMLAKLGHDSDVACDGWEA-------LEK 1394
Query: 1009 LRKEGKALPYDYIMMDCEMPVMNGWEATRLIR--KEEEQYDVHIPIIALTAHAMAGVASK 1066
L+ E +D + MD +MP M+G T IR K + IPI+A+TAHAM G
Sbjct: 1395 LKNE----DFDAVFMDIQMPGMDGVATTSRIRAAKPGSGINPEIPIVAMTAHAMLGDREV 1450
Query: 1067 IVDAGMDFHLTKPLQKDKL 1085
+D+GMD ++ KP++ D++
Sbjct: 1451 FIDSGMDEYIAKPVELDEI 1469
>gi|334120096|ref|ZP_08494179.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333457278|gb|EGK85903.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1232
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 160/317 (50%), Gaps = 39/317 (12%)
Query: 376 ALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL 435
AL K + A + A R K+ L+ SH++R L AI+G ++ D++ ++L +
Sbjct: 683 ALQKAVVAADTANRA---KSEFLSSMSHELRTPLNAILGFSQVMVRDSSLNNQHLQHLEI 739
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
I + LL ++N ++EMSKIEAG+ +L E FNL +LL+ + +M+ K + + L+
Sbjct: 740 INRAGEHLLALINDILEMSKIEAGRSQLNESSFNLMRLLKTLEEMFRLKAKSKKLQLNLE 799
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
DG V GD KL+QIL NLV N++KFT G +++R VKKK K + +
Sbjct: 800 VGDGV---PDFVSGDEGKLRQILINLVGNAIKFTEMGSVTLR--VKKKVEKS--LGAETA 852
Query: 556 VISKCLSKLF--------------------------FRNKEGFDDLDALHSVERNPNLLQ 589
S +KL F E D + + + +P +L+
Sbjct: 853 EFSDTQTKLVGAGCEHSESLAVETAAIQRKPGWCTGFNQSESLAHCDCVDAHDLHPEVLR 912
Query: 590 FEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIAD 649
+FE++DTG GI ++ N +FE F Q K T Q+G GLGL I + V +M G+I ++
Sbjct: 913 LQFEIEDTGLGIAAEEMNKLFEPFEQTK-TGQKSQQGTGLGLPISRKFVQMMGGDITVSS 971
Query: 650 KEPGERGVCFRFNVLLT 666
E G F F++ ++
Sbjct: 972 TP--ELGSKFAFDIQIS 986
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D A V +L LG R+G+EA + D + P+ I M
Sbjct: 1013 RILVVDDRADNCLVIDRLLSPLGILVREARDGQEAI----AVWEDWQ------PH-LIWM 1061
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
D +MPVM+G+EATR I+ I+ALTA A I+ AG D + KP +
Sbjct: 1062 DMQMPVMDGYEATRKIKAHP--LGKQTVIVALTASAFEEERQTILGAGCDDFMRKPFE 1117
>gi|119487282|ref|ZP_01621033.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
gi|119455837|gb|EAW36972.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
Length = 1259
Score = 134 bits (336), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 149/275 (54%), Gaps = 40/275 (14%)
Query: 375 AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLG 434
AA + + A E AE + K+ LA SH++R+ L AI+G ++ + +N T NL
Sbjct: 763 AAETELVKAKEAAEVANQAKSIFLANMSHELRSPLNAILGFTQVINGSSNLTTQQQNNLN 822
Query: 435 LIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD--V 492
+I+ + LLG++N ++++SKIEAGK+ L++E F+L +L+EE+ D++ +K + V
Sbjct: 823 IIQRSGEHLLGLINEILDLSKIEAGKIILIQEPFDLWKLIEELQDLFRIKASQKNLKLTV 882
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
+++P +++ DRVKL+QIL NL+SN++KFT +G + + A + + S
Sbjct: 883 IINPNLPR-----YIQTDRVKLRQILINLLSNAIKFTQKGTVCLEADLSETS-------- 929
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
CL G + L +Q F V DTG GI D+ +++F
Sbjct: 930 -----PVCLI--------GTETLP-----------VQLHFRVSDTGVGIEPDEIDNLFSP 965
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
FVQ ++ + Q+G GLGL I + + L G+I +
Sbjct: 966 FVQT-QSGIQSQQGTGLGLAICKGYIKLFGGKIEV 999
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 17/143 (11%)
Query: 949 AQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSD 1008
+Q G +PL + L+V+D+ ++ +L +G + + NG EA D D
Sbjct: 1031 SQVIGLQPNQPL--YRILIVDDEPYNRQLLEQILTPVGFELQTANNGLEAIDQWQNFQPD 1088
Query: 1009 LRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDV----HIPIIALTAHAMAGVA 1064
L I MD +MPV++G+EA R IR+ E+Q IIALTA A
Sbjct: 1089 L-----------IWMDLKMPVLDGYEAIRQIRQLEQQNQASASPRTVIIALTASAYNYQK 1137
Query: 1065 SKIVDAGMDFHLTKPLQKDKLLD 1087
+ AG D + KPLQ +L+
Sbjct: 1138 EAALQAGCDDFVYKPLQVTVILN 1160
>gi|350562281|ref|ZP_08931116.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349779514|gb|EGZ33857.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 1324
Score = 134 bits (336), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 140/285 (49%), Gaps = 48/285 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
+A EQAE + K+ LA SH++R L AI+GL L D +A L I +
Sbjct: 708 DAREQAEAANRAKSAFLANMSHEIRTPLNAIVGLTHLLRRDGVRPEQVA-RLDRIDNAGR 766
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL I+N ++++SKIEAG++EL +F+L+ +L+ V + +KG+ + +DP V
Sbjct: 767 HLLSIINDILDLSKIEAGRLELETTDFHLSAILDNVASIIGDPAREKGLAIEIDPDAVPV 826
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+RGD +L+Q L N N++KFT G I++RA
Sbjct: 827 W----LRGDPTRLRQALLNYAGNAVKFTEAGSITLRA----------------------- 859
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIF-EEFVQVKETA 620
+L N++G LQ FEV DTG G+P+ + +F E+F Q+
Sbjct: 860 -ELLGENEQG----------------LQVRFEVVDTGIGVPEGELQRLFHEDFAQIANAG 902
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ G GLGL IV+ + +M GE+ AD EPG G F F V L
Sbjct: 903 DRARGGTGLGLSIVRRLAEMMGGEVG-ADSEPGT-GSRFWFTVRL 945
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 945 QQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCK 1004
Q V A +D + G + L+ ED+ I +V +L +G + +G+EA +
Sbjct: 957 QAVRADADADLRAR-YAGARVLLAEDNPINREVALELLHAVGFAVDTADDGREAVHKAQE 1015
Query: 1005 ILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVA 1064
+ YD ++MD +MP M+G EA RLIR PI+A+TA+A
Sbjct: 1016 QV-----------YDLVLMDLQMPQMDGLEAARLIRALPGWK--RQPILAMTANAFEEDR 1062
Query: 1065 SKIVDAGMDFHLTKPLQKDKL 1085
AGMD L KP+ + L
Sbjct: 1063 KACEQAGMDGFLPKPVDPEDL 1083
>gi|428206662|ref|YP_007091015.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis
PCC 7203]
gi|428008583|gb|AFY87146.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis
PCC 7203]
Length = 951
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 146/291 (50%), Gaps = 24/291 (8%)
Query: 365 KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
+ +R L A I A E AE + K+ LA SH++R L AI+G +L
Sbjct: 431 RVQQRTRELNEAKIAAETAKETAEAANQAKSEFLANMSHELRTPLNAILGFAQLMQRSRT 490
Query: 425 PGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHV 484
+ EN+ +I + LL ++N V++MSKIEAG++ L +EF+L +L V +M+
Sbjct: 491 LTLEQQENVSIINRSGEHLLALINDVLDMSKIEAGRLTLHPQEFDLYLMLNAVEEMFQLK 550
Query: 485 GIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
G+ ++ CD +++ D KL+QIL NL+ N++KFTS G ++VR
Sbjct: 551 ADSLGLQLI---CDRHPDVPRYIKSDEKKLRQILINLIGNALKFTSHGSVTVR------- 600
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVE-RNPNL----LQFEFEVDDTGK 599
+IA +R+ S R + G + + + N L Q F V DTG
Sbjct: 601 ----VIAGSRDDEQGAGS----RGESGRRGVITNYQLPITNYQLPITNYQLTFTVQDTGV 652
Query: 600 GIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
GI ++ +F+ FVQ ET Q+G GLGL I Q V LM GEI+++ +
Sbjct: 653 GIAAEELGRLFQAFVQT-ETGRKSQQGTGLGLAISQKFVQLMGGEISVSSR 702
Score = 45.1 bits (105), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D ++ +L +G + NGK+A + S P+ I M
Sbjct: 743 RILVVDDRPENRQIVIKLLTPIGFEVREAENGKDA----IAVWSSWE------PH-LIWM 791
Query: 1024 DCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MPVMNG+E T I+ + Q + IIALTA + + ++ G D + KP +
Sbjct: 792 DMRMPVMNGYETTEYIKSHLKGQATI---IIALTASTLEEEKAVVLSTGCDDFMRKPFRA 848
Query: 1083 DKLLD 1087
++L +
Sbjct: 849 EELFE 853
>gi|428772393|ref|YP_007164181.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
gi|428686672|gb|AFZ46532.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
Length = 1402
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 139/272 (51%), Gaps = 49/272 (18%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A EQAE + K+ LA SH++R + A+IG+ L D + E +IRT S
Sbjct: 710 AKEQAEAANQAKSQFLATMSHEIRTPMNAVIGMTGLLL-DTELTPEQQEFTEIIRTSSDS 768
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGS 500
LL I+N +++ SKIE+GK+EL ++ F+L Q++EE +D+ +K +++V LDP
Sbjct: 769 LLSIINDILDFSKIESGKLELEQQPFSLYQVIEESLDLLAPKASQKNIELVYFLDPDI-- 826
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
S + GD +L+Q+L NL+SN++KFT G + + +
Sbjct: 827 ---SPSIIGDVTRLRQVLVNLLSNAVKFTPTGEVILSVTIDS------------------ 865
Query: 561 LSKLFFRNKEGFDDLDALHSV--ERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
HS+ R NLL F ++DTG GIP+++ + +F+ F QV
Sbjct: 866 ------------------HSIGDRRYSNLL---FVIEDTGIGIPRNRMDRLFKAFSQVDA 904
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
+ + G GLGL I Q +VHLMKG + + K
Sbjct: 905 STTRNYGGTGLGLAICQKLVHLMKGNMWVESK 936
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 119/247 (48%), Gaps = 43/247 (17%)
Query: 855 SVIRNAHSRE-YRLLPICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLK---MEAS 910
+V +N + E YR P+ ++S HG E+ K L E A+ P +
Sbjct: 1047 TVAKNISAMEKYRSTPLI--LLSSIGHG----EIEKALKEVNWAATLIKPIKQSRLFYIL 1100
Query: 911 SQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVED 970
S+ LQ+ PLNKL SL + + + + PL K L+ ED
Sbjct: 1101 SKVLQNPLPSKPLNKLSPV-------------SLTEAIGEEELSVT-SPL---KILIAED 1143
Query: 971 DAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM 1030
+ I KV + +L +LG + +V NG E D LR++ YD I+MD +MP M
Sbjct: 1144 NIINQKVITNILKRLGYRADVVGNGLEVLDA-------LRRQS----YDLILMDVQMPEM 1192
Query: 1031 NGWEATRLIR----KEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+G ATR IR + P IIA+TA+AM G + ++AGMD +L+KP++ + L
Sbjct: 1193 DGLTATRQIRTLWNSSNSDFQGQRPCIIAMTANAMEGDRQRCLEAGMDDYLSKPVKVEAL 1252
Query: 1086 LDVVKSI 1092
++ +K++
Sbjct: 1253 IEKLKTV 1259
>gi|334117721|ref|ZP_08491812.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333460830|gb|EGK89438.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 959
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 159/297 (53%), Gaps = 19/297 (6%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++AE + K+ LA SH++R+ L AI+G +L + EN+ +I + +
Sbjct: 433 AKDKAEVANQAKSTFLANMSHELRSPLNAIMGFSQLMTRSQTLCPEHQENISIISSSGEH 492
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N+V+++SKIE+G+ L ++F+L +LL ++ DM+ K + +V D S
Sbjct: 493 LLTLINNVLDLSKIESGRTTLNLKKFDLYRLLNDLEDMFELKADDKQLQLVFDR---SPE 549
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI-SKCL 561
+V D VKL+QIL NL++NS+KFT EG ++VR V K+S + A N S+
Sbjct: 550 VPQYVEADEVKLRQILINLLNNSLKFTHEGGVTVR--VSKQSLGRIQQAEGENFAHSEVS 607
Query: 562 SKLFFRNKEGFDDLDALHSVER----------NPNLLQFEFEVDDTGKGIPKDKQNSIFE 611
F G HS + + + FEV+DTG GI ++ +++FE
Sbjct: 608 PNTEFSASNGLKISQLSHSKNQVIATQNDDSASTSSFFLHFEVEDTGCGIATNELDALFE 667
Query: 612 EFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
FVQ K T QEG GLGL I + V LM G+++++ +G F+F++ + AV
Sbjct: 668 PFVQTK-TGKDSQEGTGLGLPISRKFVELMGGQMSVSSAVG--KGTNFKFDIQVIAV 721
Score = 47.8 bits (112), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D + ++ +L LG + + NG+EA + I P+ I M
Sbjct: 746 RILIVDDKLLNRQLLIKLLYPLGFELKEATNGQEAIE----IWDSWE------PH-LIWM 794
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM+G+EAT+ I+ + IIALTA + + I+ AG D + KP ++
Sbjct: 795 DMRMPVMDGYEATQYIKGTIKGQAT--AIIALTASVLEEERAVILSAGCDAFMRKPFREA 852
Query: 1084 KLLDVV 1089
+ D +
Sbjct: 853 DIFDAM 858
>gi|348028736|ref|YP_004871422.1| multi-sensor hybrid histidine kinase [Glaciecola nitratireducens
FR1064]
gi|347946079|gb|AEP29429.1| multi-sensor hybrid histidine kinase [Glaciecola nitratireducens
FR1064]
Length = 782
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 148/295 (50%), Gaps = 55/295 (18%)
Query: 375 AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN-- 432
A L ++M E+A+ + K+ LA SH++R ++ +IGLV++ EDA E
Sbjct: 376 AQLAEKM--AEKAKAADIQKSAFLANVSHEIRTPISGVIGLVDMLIEDAAMKAVSDEKRQ 433
Query: 433 --LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV 490
LGLI+ SK LL I+ +++ SKIEAGK+ + ++FNL +L+ E++D + H +KG+
Sbjct: 434 HYLGLIKNSSKHLLNIITDILDFSKIEAGKISISSQQFNLTKLVGELIDDFAHRATEKGL 493
Query: 491 DVVLDPCDGSVLG--SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQD 548
D +G + GD +L+QIL NL+ N++KFT+ G ISVRA + KK+
Sbjct: 494 -----KFDYQSVGMENALCTGDPHRLRQILYNLLGNAIKFTTAGKISVRARLNKKA---- 544
Query: 549 IIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNS 608
N N I + DTG GI +D Q +
Sbjct: 545 --DGNANFICAII----------------------------------DTGIGIKEDSQGT 568
Query: 609 IFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+FE F QV +A +G GLGL I + +V LM G + + D E G G F NV
Sbjct: 569 LFEAFEQVDSSATRRAQGTGLGLPISRKLVELMGGSVKV-DSEFG-VGSNFTINV 621
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 72/118 (61%), Gaps = 9/118 (7%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LV ED+ I V +L +L K + +G+EA +++ + Y++I+MDC
Sbjct: 655 LVAEDNEINQVVIQNLLDQLKIKCTLAADGEEALEYL--------HSDEGAQYNFILMDC 706
Query: 1026 EMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+MP ++G+E TR+IR++++ V +IPIIALTA+AM K + AGM+ +L KP+ K
Sbjct: 707 QMPKLDGFETTRMIREDDKYQKVKNIPIIALTANAMKSDKEKCLRAGMNGYLAKPVTK 764
>gi|317153381|ref|YP_004121429.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
gi|316943632|gb|ADU62683.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
Length = 867
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 135/273 (49%), Gaps = 43/273 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
M A AE + +KT L SH++R L I+G+++L E + AE + + S
Sbjct: 483 MEAKHSAEAANQSKTEFLTNISHELRTPLNGILGMLQLTRE-TRLKPEQAEYIDTAISSS 541
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL ++N ++ +++IEAG++ L++ F+ ++LE + + H KGV++ +D G
Sbjct: 542 KVLLNVINDILNIAQIEAGRLTLLDAPFSTNEVLETIYRFFRHSTEAKGVELTMDMEPGF 601
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ GD V+++QIL NL+ NS+KFT +GHISV A++
Sbjct: 602 ---PKTLVGDEVRIRQILFNLLGNSVKFTDQGHISVHASILP------------------ 640
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
V P + + DTG GIP DK + +FE F QV T
Sbjct: 641 --------------------VTPRPGRVTVLLVIKDTGIGIPSDKIDYVFESFTQVDGTY 680
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
+G GLGLGIV+S+V M G IA+ D E G
Sbjct: 681 TRQYQGTGLGLGIVRSLVWSMNGTIAV-DSETG 712
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 88/178 (49%), Gaps = 21/178 (11%)
Query: 923 LNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPL------NGKKFLVVEDDAIVLK 976
+N + +E G + + + LQ + D + E P G LVVEDD +
Sbjct: 701 MNGTIAVDSETGMGTTIYVT-LQLSLPKGDDQVDEPPRPVLRERTGLAILVVEDDRVNQL 759
Query: 977 VTSAVLGKLGAKFEVCR-NGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEA 1035
S +L K+G F C NG++A + + K +D + MD +MPVM+G EA
Sbjct: 760 AISRMLEKMG-HFPTCTPNGEKALEML-----------KGSIFDCVFMDIQMPVMDGMEA 807
Query: 1036 TRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
TR+IR V IPIIALTAHAM + AGM+ ++ KP+ ++L +V+ I
Sbjct: 808 TRMIRTAPSLAGVASIPIIALTAHAMPADREAFLKAGMNDYVAKPVSFEQLAEVLSRI 865
>gi|302878534|ref|YP_003847098.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302581323|gb|ADL55334.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 963
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 138/286 (48%), Gaps = 48/286 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A AE ++ K+ LA SH++R L A++G L +D + NL +I +
Sbjct: 499 ARNAAETANLAKSVFLANMSHELRTPLNAVLGFSSLLRKDPLLSKEQRTNLNIINRSGEY 558
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V+EM+KIEAG ++L +L L+ +V DM +KG+ +++D S
Sbjct: 559 LLALINDVLEMAKIEAGWVQLDSAPLDLGMLVRDVTDMMQVRAQEKGLQLLIDQ---SSE 615
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++RGD +L+QIL NLV N++KFT +G ++VR +K + ++
Sbjct: 616 FPRYIRGDEARLRQILINLVGNAVKFTQQGGVTVRFGLKPNTTPAHLL------------ 663
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
EV+DTG GI + Q IFE FVQV E A+
Sbjct: 664 -----------------------------IEVEDTGSGIAAEDQEKIFEPFVQVGEVAM- 693
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
Q+G GLGL I + V LM G + + K PG G FR + + V
Sbjct: 694 -QKGTGLGLTITRQFVQLMGGSVTLNSK-PGS-GSLFRVELPINMV 736
Score = 46.2 bits (108), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 25/132 (18%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED + ++ +LG +V +G EA + DL I M
Sbjct: 763 RILIVEDQQENQLLLRQLMERLGLPVKVASDGVEALELFNSWHPDL-----------IWM 811
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIP------IIALTAHAMAGVASKIVDAGMDFHLT 1077
D MPVM+G EA R IR +P IIA+TA A ++++ AGM+ +
Sbjct: 812 DRRMPVMDGIEAARRIRA--------LPGGEATKIIAVTASAFMEQRTEMLAAGMNDFVR 863
Query: 1078 KPLQKDKLLDVV 1089
KP + +++ D +
Sbjct: 864 KPYRFNEIYDAL 875
>gi|428312449|ref|YP_007123426.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428254061|gb|AFZ20020.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 655
Score = 133 bits (334), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 142/270 (52%), Gaps = 40/270 (14%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ +A SH++R+ L I+G +L + + + ENL +I + LL ++N V+++
Sbjct: 189 KSTFIANMSHELRSPLNVILGFTQLMTKSSTLAPEQRENLSIIARSGEHLLTLINQVLDL 248
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEAG+ L E F+L +LL+++ DM+ ++ + +V + +VR D VK
Sbjct: 249 SKIEAGRTTLNETNFDLHRLLDDLEDMFQLKADERHLQLVFERNSDI---PQYVRTDEVK 305
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
L+QIL NL++N++KFT EG + +R VK+++ N E
Sbjct: 306 LRQILINLLNNAIKFTQEGGVCLR--VKRQT----------------------SNDE--- 338
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
E N + + FE++DTG GI +D +IFE FVQ +T QEG GLGL I
Sbjct: 339 -------TEENISQFKLNFEIEDTGYGICQDDLEAIFEAFVQ-SQTGKQAQEGTGLGLPI 390
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ V LM GEI ++ E G G F F++
Sbjct: 391 ARKFVQLMDGEITVS-SEVG-HGTIFNFDI 418
Score = 43.1 bits (100), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D + +L LG + + NGKEA + + D + P+ I M
Sbjct: 448 RILIVDDKWSNRHLLMKLLSPLGFELKEASNGKEAIE-----VWDTWE-----PH-LIWM 496
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP+++G+EAT+ I+ + IIALTA + + ++ AG D + KP ++
Sbjct: 497 DMRMPILDGYEATKQIKGISKGQAT--AIIALTASTLEEDRAIVLSAGCDGFVRKPFREA 554
Query: 1084 KLLDVV 1089
+ D +
Sbjct: 555 DIWDAM 560
>gi|428214267|ref|YP_007087411.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002648|gb|AFY83491.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 2636
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 137/266 (51%), Gaps = 38/266 (14%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
L+K SH++R L AI+G ++ + D + + LG+I + LL ++N V+EMSKIE
Sbjct: 2170 LSKMSHELRTPLNAILGFTQILNRDHTLQSQQQDYLGIISRAGEHLLSLINDVLEMSKIE 2229
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQI 517
AG++ L E F+L +LL + +M+ KG+ ++L+ ++ D KL+Q+
Sbjct: 2230 AGRISLNETSFDLYRLLTSLEEMFRLKAESKGLQLILERTPNL---PPFIKTDESKLRQV 2286
Query: 518 LCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDA 577
NL+ N++KFT +G I+VR + KSF ++ K FF
Sbjct: 2287 FINLLGNAIKFTEKGGITVRVKSEIKSF-----------FTEEFEKQFF----------- 2324
Query: 578 LHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSM 637
L E++DTG GI ++ +++F+ FVQ ET Q G GLGL I +
Sbjct: 2325 ----------LYLSCEIEDTGPGIRGEELDTLFDPFVQT-ETGRNSQSGTGLGLPISRQF 2373
Query: 638 VHLMKGEIAIADKEPGERGVCFRFNV 663
V LM G+I ++ E+G F+FN+
Sbjct: 2374 VELMGGKITVSSTL--EKGTIFKFNI 2397
Score = 45.4 bits (106), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I MD +MPVM+G+ ATR I++ + IP II LTA A + +++AG D +KP
Sbjct: 2473 IWMDMQMPVMDGYAATRQIKR---MTNGPIPVIIGLTASAFEENRAMVLEAGCDDFASKP 2529
Query: 1080 LQKD 1083
++D
Sbjct: 2530 FRED 2533
>gi|373958022|ref|ZP_09617982.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
DSM 18603]
gi|373894622|gb|EHQ30519.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
DSM 18603]
Length = 1025
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 136/283 (48%), Gaps = 47/283 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A EQAE + KT L+ SH++R + A+IG L + NP D E L +++
Sbjct: 636 IQAKEQAENAASAKTQFLSTMSHEIRTPMNAVIGFTHLLLQ--NPREDQVEYLKILKFSG 693
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
++LL ++N +++ SKIEAGK+E +FNL L+ + I+KG+ + L D
Sbjct: 694 ENLLVLINDILDFSKIEAGKLEFEHVDFNLKDLVRNIRAAMQQRAIEKGIQLKL-LVDED 752
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ + V GD V+L QIL NL+SN++KFTS G + V A++
Sbjct: 753 LPQA--VIGDPVRLGQILSNLISNALKFTSVGKVVVSASL-------------------- 790
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
V RN FEV DTG GIP +KQ +IFE F Q
Sbjct: 791 --------------------VSRNNEYTIVSFEVKDTGIGIPTEKQQAIFESFTQASSDT 830
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + ++ M+G D EPG +G F FN+
Sbjct: 831 TRKYGGTGLGLTITKRLLE-MQGSAIQLDSEPG-KGSTFSFNL 871
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G + L+ ED+ I + + L + + +V NG A + L YD
Sbjct: 895 LKGIRILLAEDNQINVLLARQFLKQWDVECDVAENGLMAVELAQSNL-----------YD 943
Query: 1020 YIMMDCEMPVMNGWEATRLIR--KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
I+MD +MP M+G+ A IR + E++ +PIIALTA AM K GM+ +++
Sbjct: 944 VILMDLQMPEMDGYTAAEQIRNLQPAERFR-KLPIIALTASAMLDNKDKAFVVGMNDYIS 1002
Query: 1078 KPLQKDKL 1085
KP D+L
Sbjct: 1003 KPFNPDEL 1010
>gi|284036668|ref|YP_003386598.1| histidine kinase [Spirosoma linguale DSM 74]
gi|283815961|gb|ADB37799.1| histidine kinase [Spirosoma linguale DSM 74]
Length = 1407
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 151/316 (47%), Gaps = 50/316 (15%)
Query: 361 ILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCH 420
IL K ++ L + + A +AE + K+ LA SH++R L +IG+ L
Sbjct: 861 ILNEKLEQQYGRLAQQSVLEQQARLEAETANKAKSVFLATMSHEIRTPLNGVIGMTALL- 919
Query: 421 EDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDM 480
ED + E IR+C + LLG++N +++ SKIE+GKMEL ++ L LEEV+DM
Sbjct: 920 EDTPLSEEQREYAHTIRSCGESLLGVINDILDFSKIESGKMELEQQPIELRSCLEEVLDM 979
Query: 481 YYHVGIKKGVDVV--LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRA 538
+ + G+D++ +DP L + GD ++L+QIL NLV N++KFT +G + V
Sbjct: 980 FAGKAGQTGLDLIYQIDP-----LVPPQILGDSLRLRQILINLVGNAVKFTHQGEVMV-- 1032
Query: 539 AVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTG 598
V+ + + D ++ F V DTG
Sbjct: 1033 GVQLVAVRPD-------------------------------------QAVELAFTVRDTG 1055
Query: 599 KGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVC 658
GIP K +F+ F QV + G GLGL I Q ++ LM G I + + E G +G
Sbjct: 1056 IGIPGSKIGQLFKAFSQVDSSHSRQYGGTGLGLIISQRLIELMGGVIRV-ESEVG-KGTA 1113
Query: 659 FRFNVLLTAVCERERP 674
FRF L+ E ++P
Sbjct: 1114 FRF-TLVCQTGEEKKP 1128
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 66/117 (56%), Gaps = 17/117 (14%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ I +K+ VL KLG V NG+E +LS L EG +D I+M
Sbjct: 1283 QILIAEDNPINVKLLVRVLNKLGYSPTVANNGQE-------VLSRLH-EG----FDLILM 1330
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKP 1079
D +MP M+G EATRLIR++ + P IIALTA AM + GM+ +++KP
Sbjct: 1331 DIQMPEMDGLEATRLIRQQA----IRQPWIIALTADAMLEDRELCLAVGMNDYMSKP 1383
>gi|428202001|ref|YP_007080590.1| signal transduction histidine kinase [Pleurocapsa sp. PCC 7327]
gi|427979433|gb|AFY77033.1| signal transduction histidine kinase [Pleurocapsa sp. PCC 7327]
Length = 954
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 145/284 (51%), Gaps = 36/284 (12%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A E AER + K+ LA SH++R L AI+G +L + + + EN+G+I +
Sbjct: 468 QAKEVAERANRAKSDFLANMSHELRTPLNAILGFSQLLNRETSLTKQQQENIGIINRSGE 527
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N V++++KIE+GKM L +F+L LL+ + +M KG+ +++ +
Sbjct: 528 HLLSLINDVLDLAKIESGKMALYPTDFDLYALLDLIEEMLALRAESKGLQFIIERSNDL- 586
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
++ D KL+Q+L NL+ N++KFT EG + +RA+ D +A N
Sbjct: 587 --PRYINTDDKKLRQVLINLLGNAIKFTHEGSVILRAS---SVMSHDSLARN-------- 633
Query: 562 SKLFFRNKEGFDDLDALHSVER--NPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
H +R + FE++DTG GI ++ +++FE FVQ ET
Sbjct: 634 -----------------HKEQRINDQGQTTIYFEIEDTGAGIAPEEIDTLFEAFVQT-ET 675
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
Q+G GLGL I + V LM G I ++ K +G F+FN+
Sbjct: 676 GKQSQQGTGLGLPITKKFVELMGGTITVSSKVG--QGSIFKFNI 717
Score = 45.1 bits (105), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 15/125 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D ++ +L G + + NG+EA + I + P+ I M
Sbjct: 747 RILVVDDRWENRQLLLKLLQPTGFQVKEASNGQEAIE----IWQSWQ------PH-LIWM 795
Query: 1024 DCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MPVMNG+EAT+ I+ + Q V I+ALTA + + I+ AG D + KP ++
Sbjct: 796 DMRMPVMNGYEATQQIKSHIQGQATV---IVALTASTLEEEKAVILSAGCDDFVRKPFRE 852
Query: 1083 DKLLD 1087
+ + +
Sbjct: 853 EVIFE 857
>gi|445414131|ref|ZP_21433856.1| GHKL domain protein [Acinetobacter sp. WC-743]
gi|444764950|gb|ELW89255.1| GHKL domain protein [Acinetobacter sp. WC-743]
Length = 934
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 136/288 (47%), Gaps = 46/288 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A +QA + K+ LA SH++R L +I G + L N D + L IR S
Sbjct: 279 ARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNDQSLYLQTIRKSSAH 338
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K +++ D
Sbjct: 339 LLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIEMAFYFADNV-- 396
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
HV GD ++ KQ+L NL+SN++KFT +G I VRA ++ I +CL
Sbjct: 397 -PKHVIGDALRFKQVLTNLISNAIKFTPDGEIIVRARMEHDD------------IGQCL- 442
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
LH F V D+G G+ + +FE F Q +
Sbjct: 443 ---------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGDASVTR 475
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTA 667
G GLGL I + +VHLM G+I D + P E+G F F +LT
Sbjct: 476 QFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAMLTT 523
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 89/169 (52%), Gaps = 12/169 (7%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSE-KPLNGKKF--LVVEDD 971
Q DPN LN+ + A S S +Q ++ + + + K G+ L V+D
Sbjct: 617 QMSLDPNMLNE---YMARPLYQPLSRSSVIQLLSNKPIFEQEQHKDFKGQDLHILAVDDH 673
Query: 972 AIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN 1031
L V A+LG+L K ++G+EA I+ ++G P+D I MD +MPVM+
Sbjct: 674 LPNLIVLEALLGELNVKTTKAQSGQEAL----TIIQQAVEQGSK-PFDLIFMDIQMPVMS 728
Query: 1032 GWEATRLIRKEEEQYD-VHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
G + TR IR E D + +PIIALTAHA+A K++ GMD ++TKP
Sbjct: 729 GIDTTRAIRSLESTLDGMRMPIIALTAHALADEKQKLLKVGMDDYVTKP 777
>gi|403051784|ref|ZP_10906268.1| barA [Acinetobacter bereziniae LMG 1003]
Length = 934
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 136/288 (47%), Gaps = 46/288 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A +QA + K+ LA SH++R L +I G + L N D + L IR S
Sbjct: 279 ARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNDQSLYLQTIRKSSAH 338
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K +++ D
Sbjct: 339 LLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIEMAFYFADNV-- 396
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
HV GD ++ KQ+L NL+SN++KFT +G I VRA ++ I +CL
Sbjct: 397 -PKHVIGDALRFKQVLTNLISNAIKFTPDGEIIVRARMEHDD------------IGQCL- 442
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
LH F V D+G G+ + +FE F Q +
Sbjct: 443 ---------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGDASVTR 475
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTA 667
G GLGL I + +VHLM G+I D + P E+G F F +LT
Sbjct: 476 QFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAMLTT 523
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 12/169 (7%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSE-KPLNGKKF--LVVEDD 971
Q DPN LN+ + A S S +Q ++ + + + K G+ L V+D
Sbjct: 617 QMSLDPNMLNE---YMARPLYQPLSRSSVIQLLSNKPIFEQEQHKDFKGQDLHILAVDDH 673
Query: 972 AIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN 1031
L V A+LG+L K ++G+EA + + + E + P+D I MD +MPVM+
Sbjct: 674 LPNLIVLEALLGELNVKTTKAQSGQEALTIIQQAV-----EQGSKPFDLIFMDIQMPVMS 728
Query: 1032 GWEATRLIRKEEEQYD-VHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
G + TR IR E D + +PIIALTAHA+A K++ GMD ++TKP
Sbjct: 729 GIDTTRAIRSLESTLDGMRMPIIALTAHALADEKQKLLKVGMDDYVTKP 777
>gi|428318322|ref|YP_007116204.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
gi|428242002|gb|AFZ07788.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
Length = 1219
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 158/309 (51%), Gaps = 30/309 (9%)
Query: 376 ALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL 435
AL K + A + A R K+ L+ SH++R L AI+G ++ D++ ++L +
Sbjct: 683 ALQKAVVAADTANRA---KSEFLSSMSHELRTPLNAILGFSQVMVRDSSLNNQHQQHLEI 739
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
I + LL ++N ++EMSKIEAG+ +L E FNL +LL+ + +M+ K + + L+
Sbjct: 740 INRAGEHLLALINDILEMSKIEAGRSQLNESSFNLMRLLKTLEEMFRLKAKSKKLQLNLE 799
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKK------------ 543
G V GD KL+QIL NLV N++KFT G +++R VKKK
Sbjct: 800 VGQGV---PQFVSGDEGKLRQILINLVGNAIKFTERGSVTLR--VKKKVEESLGAETAEL 854
Query: 544 SFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNP------NLLQFEFEVDDT 597
S Q+ +A I + N+ D D + + P LL+ +FE++DT
Sbjct: 855 SDTQESLAVETAAI-QTKPAYAGSNQSAQADFDCVDANSIRPVFLQKSELLRLQFEIEDT 913
Query: 598 GKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGV 657
G GI ++ N +FE F Q K T Q+G GLGL I V +M G+I ++ K E G
Sbjct: 914 GLGIAPEEINKLFEPFEQTK-TGQKSQQGTGLGLPISHKFVQMMGGDITVSSKH--ELGS 970
Query: 658 CFRFNVLLT 666
F F++ ++
Sbjct: 971 KFAFDIQIS 979
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 20/141 (14%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D A V +L LG R+G+EA I D + P+ I M
Sbjct: 1006 RILVVDDRADNGLVIDRLLSPLGIVVRSARDGQEAI----AIWEDWQ------PH-LIWM 1054
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK- 1082
D +MPVM+G+EATR I+ I+ALTA I+ AG D + KP +
Sbjct: 1055 DMQMPVMDGYEATRQIKAHP--LGKQTVIVALTASVFEEERQTILGAGCDDFMRKPFEAK 1112
Query: 1083 ------DKLLDVVKSIDETME 1097
++LL V +E++E
Sbjct: 1113 ILFAKMEELLGVRYIYEESVE 1133
>gi|428772854|ref|YP_007164642.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
stanieri PCC 7202]
gi|428687133|gb|AFZ46993.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
stanieri PCC 7202]
Length = 946
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 151/292 (51%), Gaps = 27/292 (9%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN 432
L A ++ A E+AE + K+ LA SH++R + AI+G ++ ++ EN
Sbjct: 448 LQAGNLELAQAKERAEIANKTKSIFLANMSHELRTPMNAILGFSQIMMRSKKLDSEQLEN 507
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
+ +I LL ++N+V+++SKIEAGKM L + +L L++E+ D+ Y +K + +
Sbjct: 508 ISIINRSGNYLLNLINNVLDLSKIEAGKMMLNLKNIDLYNLIDEIEDLLYLKAEEKNLQL 567
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
D +V ++R D KL+Q+L N+++N +KFT EG +++ + F Q +
Sbjct: 568 TF-ITDENV--PRYIRTDETKLRQVLINIINNGIKFTDEGGVNIVTEIMSNDFSQTQVNK 624
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
+ N +C ++ ++ +F V+D+G GI K+ + +F+
Sbjct: 625 SWNQEDECY---------------------QDYPYVRIKFTVEDSGIGIAKEDIDKVFDA 663
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
F+Q E QEG GLGL I + V LM G+I++ + +G FRF++L
Sbjct: 664 FIQT-EVGRKSQEGTGLGLSISRKFVQLMGGDISL--RSNLGKGTVFRFDIL 712
Score = 46.6 bits (109), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 937 ISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGK 996
IS H + ++V A G+ S + LVV+D I + +L LG + + NG+
Sbjct: 723 ISPHHHT-RKVVALKKGQPS------YRILVVDDRPINRLLMVKLLQPLGFELKEAVNGE 775
Query: 997 EAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALT 1056
EA L +E + P+ I MD MP+M+G++AT+ I+ + IIALT
Sbjct: 776 EAIA--------LWEEWE--PH-LIWMDMRMPIMDGYQATQYIKSTLKGNAT--AIIALT 822
Query: 1057 AHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
A + + ++ AG D + KP ++ + D +
Sbjct: 823 ASVLEEEKAIVISAGCDDFIRKPFRESVIFDTM 855
>gi|334117195|ref|ZP_08491287.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333462015|gb|EGK90620.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 856
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 152/295 (51%), Gaps = 30/295 (10%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L +I+G ++ + + EN+ +IR + LL ++N V+++
Sbjct: 322 KSTFLANMSHELRTPLNSILGFAQIMEPSPDLSVENRENMRIIRRSGEHLLTLINEVLDL 381
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMY--------YHVGIKKGVDVVLDPCDGSVLGSC 505
SKIEAG+M L + F+L +LL+++ DM+ + ++ DV
Sbjct: 382 SKIEAGRMTLNPKNFDLYRLLDDLQDMFQLRVENQDLQLRFQRDADV-----------PQ 430
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS-KL 564
+VR D +KL+Q+L NL+SN++KFT G I +R +KS D++ S S +
Sbjct: 431 YVRADDIKLRQVLINLLSNAIKFTQTGEIILRVIKLEKSGYLDLLDSPTACFDTTRSIRD 490
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQF--EFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
F R F D + + F FE++DTG GI ++ +IF+ FVQ TA G
Sbjct: 491 FSRTSSDF-ARDRWRDEAEDSTVPAFFLLFEIEDTGVGIAPEELGNIFKAFVQ---TASG 546
Query: 623 HQ--EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPD 675
+ +G GLGL I + V LM GEI + + E G F+F + + AV E PD
Sbjct: 547 KKNPKGTGLGLKISRQFVRLMGGEIVVESE--LELGTTFKFEIPVGAVYAAELPD 599
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 27/142 (19%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D ++ +L LG E NG+EA + L I+M
Sbjct: 617 RILIVDDREDNRQLLVKMLSPLGFGVEQATNGQEAIEMWENWHPHL-----------ILM 665
Query: 1024 DCEMPVMNGWEATRLIR-----KEEEQY----------DVHIP-IIALTAHAMAGVASKI 1067
D MPVM+G+EAT+ I+ +E+EQ D IP IIALTA + G S
Sbjct: 666 DVRMPVMDGYEATKQIKARIKQREQEQQGNGEMNISHPDSPIPKIIALTASTIEGKRSFA 725
Query: 1068 VDAGMDFHLTKPLQKDKLLDVV 1089
+ G D ++KP +K + D +
Sbjct: 726 LLVGCDDFISKPFRKTDIFDTL 747
>gi|334116803|ref|ZP_08490895.1| PAS sensor protein [Microcoleus vaginatus FGP-2]
gi|333461623|gb|EGK90228.1| PAS sensor protein [Microcoleus vaginatus FGP-2]
Length = 2286
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 142/296 (47%), Gaps = 49/296 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E A ++ K+ LA SH++R L AI+G +L ++D N T+ ENL +I+ +
Sbjct: 1787 AKEAAVAANLAKSTFLANMSHELRTPLNAILGFSQLMNQDTNLLTEQKENLNIIQRSGEH 1846
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V+++SK+EAG M L E NL L E+ D++ + + + + C V
Sbjct: 1847 LLSLINQVLDLSKVEAGGMTLSENNLNLHHFLAEIEDIFALKANDQSLHLRFE-CAADV- 1904
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++ D VKL+Q+L N +SN++KFTS G +S+ VK K K A +
Sbjct: 1905 -PKYICADEVKLRQVLINFISNAVKFTSSGSVSLE--VKNKQVKAQSEAGTKTT------ 1955
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
NP FEV DTG GI ++ ++F+ FVQ TA G
Sbjct: 1956 --------------------NNPQSTTITFEVKDTGVGIAAEELENLFKPFVQ---TASG 1992
Query: 623 H--QEGLGLGLGIVQSMVHLMKGEIAIADK----EPG---------ERGVCFRFNV 663
Q+G GLGL I + V LM GEI + PG G F+F++
Sbjct: 1993 QKVQQGTGLGLTISRQFVRLMGGEITVISHGKAFTPGMPLKEFLEDTTGTTFKFDI 2048
Score = 44.7 bits (104), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D ++ +L +G + E NG EA + L I M
Sbjct: 2078 RILVVDDRDYNRQLLVKLLKPVGFEVEEASNGIEALEIWDSYSPHL-----------IWM 2126
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM+G+EAT+ I+ + +IA+TA + I+ AG D + KP +
Sbjct: 2127 DMRMPVMDGYEATKRIKGTLK--GQATAVIAITASVWEEEKAVILSAGCDDFVRKPFHTE 2184
Query: 1084 KLLDVV 1089
+ D++
Sbjct: 2185 AIFDIM 2190
>gi|298493109|ref|YP_003723286.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
gi|298235027|gb|ADI66163.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
Length = 1002
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 147/295 (49%), Gaps = 45/295 (15%)
Query: 358 LFIILIAKAAKREMFLCAALIKQM---NATEQAERKSMNKTFALAKASHDVRASLAAIIG 414
+F I +A+ + + L A Q+ A EQAE + K+ LAK SH++R L AI+G
Sbjct: 495 IFEIEVAQEMRNSLMLAALEFSQVALQQAAEQAEIANRAKSQFLAKMSHELRTPLNAILG 554
Query: 415 LVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLL 474
++ +++ + ENL +I + LL ++N V+EMSKIEAGK L E F+L +L+
Sbjct: 555 FTQILTRNSSLSQEDQENLDIISRSGEHLLSLINDVLEMSKIEAGKPTLNETYFDLYRLI 614
Query: 475 EEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHI 534
+ +M+ KG++++ + V + +V GD KLKQIL NL+ N++KFT GH+
Sbjct: 615 YSIQEMFALKAADKGINLI---TEFGVEVNKYVFGDEGKLKQILINLIGNAIKFTVVGHV 671
Query: 535 SVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEV 594
++R + + +N V+ E EV
Sbjct: 672 AIRVSCPPNY--APLAVTNGKVL--------------------------------IELEV 697
Query: 595 DDTGKGIPKDKQNSIFEEFVQVKETALGHQ--EGLGLGLGIVQSMVHLMKGEIAI 647
+DTG GI + Q IFE F+Q K G Q +G GLGL I + LM G+I +
Sbjct: 698 EDTGAGIALEDQELIFEAFLQSKG---GRQFMQGTGLGLAISRQFARLMGGDITV 749
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED + +L +G NG +A D +C+ + P+ I M
Sbjct: 794 RILIVEDILENRLLLVKLLESVGLDVRAVENGLQAID-ICQ---------EWEPH-LIWM 842
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MPVMNG+EAT+ IR + + I +IALTA A I+ G D ++KP ++
Sbjct: 843 DIQMPVMNGYEATKQIRAMNQGKN--IIMIALTASAFEEDKQAILQVGCDDIISKPFEEK 900
Query: 1084 KLLD 1087
L +
Sbjct: 901 MLFE 904
>gi|428214268|ref|YP_007087412.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002649|gb|AFY83492.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 2261
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 149/285 (52%), Gaps = 30/285 (10%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A E A+ S K L+K SH++R L AI+G ++ + D + + E L +I +
Sbjct: 1766 QAKESADAASKAKGEFLSKMSHELRTPLNAILGFTQILNRDHSLKSQQQEYLSIISRAGE 1825
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N V+EMSKIEAG++ L E F+L +LL + +M+ +G+ ++ + V
Sbjct: 1826 HLLTLINDVLEMSKIEAGRISLNETSFDLYRLLTSLEEMFRLKAESQGLHLIFEQT-SDV 1884
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
G ++ D KL+QIL NL+ N++KFT +G ++VR + S
Sbjct: 1885 PG--FIKTDESKLRQILINLLGNAIKFTEQGGVTVRVTTESHSLT--------------- 1927
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
N + D D++ E+ L+ E++DTG GI ++ S+F+ FVQ K T +
Sbjct: 1928 -----ANGQPSTDPDSIEG-EKQTYLV---CEIEDTGPGINAEELESLFDPFVQTK-TGI 1977
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
Q G GLGL I + V LM G+I ++ ++G F+FN+ ++
Sbjct: 1978 KSQSGTGLGLPISRQFVELMGGKITVSST--LDKGTIFQFNIKMS 2020
Score = 47.0 bits (110), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I MD +MPVM+G+EAT+ I++ + + IP II LTA A ++++AG D +KP
Sbjct: 2093 IWMDMQMPVMDGYEATKQIKQSKSE---QIPVIIGLTASAFEENRVRVLEAGCDDFASKP 2149
Query: 1080 LQKDKLLD 1087
++ + +
Sbjct: 2150 FREQVIFE 2157
>gi|345870773|ref|ZP_08822723.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343921242|gb|EGV31963.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1050
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 139/268 (51%), Gaps = 37/268 (13%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A +AE + K+ L+ SH++R + AIIG+ E+ D G D + ++++
Sbjct: 392 IEAKHRAEAATEAKSRFLSSMSHELRTPMNAIIGVGEVL-ADTELGRDQVHFIRILQSAG 450
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
DLL ++N ++++SKIE+G++ L +F+L+QL+EE+ DM KG+D+ L G
Sbjct: 451 DDLLNVINDILDISKIESGELTLESIDFDLSQLVEEICDMLAIRARTKGLDLALRL--GR 508
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
L + GD +L+QIL NL+ N++KFT +G++SV ++++ S
Sbjct: 509 YLPK-RIVGDPHRLRQILINLIGNAVKFTEQGYVSVEVSLEETSVPS------------- 554
Query: 561 LSKLFFRNKEGFDDLDALHSVERNP-NLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
+ E+ P + + F + DTG GIP+DKQ IFE F QV +
Sbjct: 555 -------------------AAEKPPGSQVALVFSIRDTGIGIPEDKQEQIFESFTQVDSS 595
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
G GLGLGI + + LM G I +
Sbjct: 596 TTRQYGGTGLGLGISRRLATLMGGTIEV 623
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Query: 941 CSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFD 1000
S Q + DG+ L + LVVED + A L + + + NG EA +
Sbjct: 791 SSGEQGATTEDDGRS----LPAARILVVEDSPHNRTLIQAFLARTPLRVDYAENGAEAIE 846
Query: 1001 HVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHA 1059
+ A Y ++MD +MPVM+G+EAT IR++E + PI+ALTA A
Sbjct: 847 -----------KWNANAYTLVLMDMQMPVMDGYEATTAIREQERTEGRAPTPIVALTAFA 895
Query: 1060 MAGVASKIVDAGMDFHLTKPLQK 1082
+ + AG D HL KP++K
Sbjct: 896 LTADVDTCLAAGCDAHLAKPIRK 918
Score = 40.0 bits (92), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K+ L+V+D ++V +LG++ ++ + E+ + +L+ R G+ P+D ++
Sbjct: 660 KRILIVDD----IEVNRLILGEMLLEWGMDFAEAESAEQALTLLNAARNAGR--PFDILL 713
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAM-AGVASKIVDAGMDFHLTKPLQ 1081
+D MP M+G + +I ++ + D+ I ++A M +I AG HL KP++
Sbjct: 714 LDYWMPGMDGLDLANVITQDLDFADLDIVMLASDTLIMDKARTQRIRLAG---HLVKPVK 770
Query: 1082 KDKL 1085
K L
Sbjct: 771 KRDL 774
>gi|386829552|ref|ZP_10116659.1| PAS domain S-box [Beggiatoa alba B18LD]
gi|386430436|gb|EIJ44264.1| PAS domain S-box [Beggiatoa alba B18LD]
Length = 1259
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 145/295 (49%), Gaps = 46/295 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A QAE + K+ LA SH++R + AI+G +L DA+ L ENL +I +
Sbjct: 791 AKNQAEAANRAKSAFLANMSHELRTPMNAILGFSQLMQRDAHITPSLQENLEIINRSGEH 850
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V+ MSKIEAG+M L E+ F+L LL + D+++ K ++++ D
Sbjct: 851 LLALINDVLAMSKIEAGRMMLNEQNFDLYHLLNGLHDLFHLQATNKNLNLIFQRPDTL-- 908
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+VR D KL+Q+L NL+ N++KFT+ G+IS+ II + K
Sbjct: 909 -PHYVRTDENKLRQVLINLLGNAIKFTNTGNISL------------IITHTKPEADKV-- 953
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+LFF+ V DTG GI + + + +F+ F Q T
Sbjct: 954 RLFFK--------------------------VKDTGLGIAQHELSQLFKAFGQTT-TGQQ 986
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTD 677
QEG GLGL I Q V LM GEI + + G+ G F F++ +T + + P D
Sbjct: 987 AQEGTGLGLRISQEFVRLMGGEITV-ESWVGQ-GTTFSFDINVTPIDATDVPFKD 1039
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED ++ S +L LG + NG+EA K L I M
Sbjct: 1055 RLLVVEDRWENRELISRLLEPLGFAVQKAANGQEAVAIWAKWQPHL-----------IWM 1103
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM+G ATR I+ + + IIALTA A + +++AG D +TKP +++
Sbjct: 1104 DIRMPVMDGVAATRSIKARKTGH--RTVIIALTAGAFEEERAAMLEAGCDDFVTKPFKEE 1161
Query: 1084 KLLD 1087
+ +
Sbjct: 1162 VIFE 1165
>gi|428297287|ref|YP_007135593.1| integral membrane sensor hybrid histidine kinase [Calothrix sp. PCC
6303]
gi|428233831|gb|AFY99620.1| integral membrane sensor hybrid histidine kinase [Calothrix sp. PCC
6303]
Length = 759
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 147/286 (51%), Gaps = 43/286 (15%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
A+ + K+ +A SH++R+ L AI+G ++ G + EN+G+I + LL +
Sbjct: 294 ADAANQAKSTFIANMSHELRSPLNAILGFAQIMTRSQALGKENQENVGIIYRSGEHLLTL 353
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH 506
+N+V+++SKIEAGK L + F+L +LL+++ DM+ +K + ++++ + V +
Sbjct: 354 INNVLDLSKIEAGKTTLNPKNFDLHRLLDDIHDMFQIKAEEKNLQLIME-YEPDV--PQY 410
Query: 507 VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFF 566
+R D VKL+Q+L NL++N +KFT G +S+R +K +
Sbjct: 411 IRTDEVKLRQVLINLINNGLKFTQSGGVSIRVGHQKNTLAN------------------- 451
Query: 567 RNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEG 626
+D D ++ FEV+D+G GI ++ +FE F Q T QEG
Sbjct: 452 ------EDADTIN------------FEVEDSGAGIAPEELGELFEAFSQTT-TGKQAQEG 492
Query: 627 LGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
GLGL I + V LM G+I + K E+G F F++ +T V E
Sbjct: 493 TGLGLPISRQFVSLMGGDIQV--KSQVEKGTTFFFDIQVTRVNANE 536
Score = 46.2 bits (108), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D + ++ +L LG + + NG+EA + + + P+ I M
Sbjct: 557 RLLIVDDKPLNRQLLIKLLSPLGFQLQEASNGQEAIN-IWETWE---------PH-LIWM 605
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D M VM+G+EAT+ I+ + +IA+TA + + ++ AG D L KP +++
Sbjct: 606 DMRMTVMDGYEATQRIKNTTKGQAT--AVIAVTASVLEEEKAVVLSAGCDDFLRKPFREE 663
Query: 1084 KLLDVV 1089
++ V+
Sbjct: 664 EIFQVM 669
>gi|390444404|ref|ZP_10232182.1| PAS/PAC sensor hybrid histidine kinase [Nitritalea halalkaliphila
LW7]
gi|389664657|gb|EIM76145.1| PAS/PAC sensor hybrid histidine kinase [Nitritalea halalkaliphila
LW7]
Length = 1285
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 143/289 (49%), Gaps = 46/289 (15%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
+AE K+ L+ SH++R + A+IG+ L +D NP D ENL ++ +++L+
Sbjct: 904 KAEEALRVKSQFLSIMSHEIRTPMNAVIGISHLLLQD-NPRLDQLENLKTLQFSAENLMA 962
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N +++ +KI++GK++L F L ++++V Y + +KG+ + D +G
Sbjct: 963 LINDILDFNKIDSGKLQLEHIPFQLKDNIQKIVRSYSYTASEKGLRLKADVQEGI---PE 1019
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
V GD ++ QIL NLVSN++KFT GH+ +R +K+K ++R+V
Sbjct: 1020 QVLGDPTRISQILNNLVSNALKFTESGHVLLRVVLKEK--------TDRSV--------- 1062
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
Q FEV+DTG GIP DK+ SIFE F Q
Sbjct: 1063 -----------------------QLLFEVEDTGIGIPDDKKESIFEAFTQASSETTRKYG 1099
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
G GLGL IV+ ++ + +I + D G G F F + T E+P
Sbjct: 1100 GTGLGLAIVKRLIEMHGSDIQVKDNFYG--GTTFSFLLEFTYETVTEKP 1146
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 16/134 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLG-AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+ LV ED+ + + + + G + NG+E +L L +E D ++
Sbjct: 1163 RVLVAEDNMVNQLMIRKFMERWGVGNIRLVDNGEE-------VLKALEEESA----DLLL 1211
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ- 1081
+D +MPVM+G+EA RLIR + IPIIALTA ++ + I AG+ H+ KP
Sbjct: 1212 LDLQMPVMDGFEAARLIRSNPLKPYADIPIIALTASSIVDIQQDIRAAGIYDHMGKPFDP 1271
Query: 1082 ---KDKLLDVVKSI 1092
K KL+ V + +
Sbjct: 1272 QELKKKLMQVAQQL 1285
>gi|119490652|ref|ZP_01623057.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
gi|119453817|gb|EAW34974.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
Length = 1064
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 148/290 (51%), Gaps = 43/290 (14%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+AE ++ K+ +A SH++R L AI+G ++ + +N + E++ +I +
Sbjct: 593 AKEKAEVANVAKSAFIANMSHELRTPLNAILGFSQIMNRSSNLPNEHQESVKIINRSGEY 652
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N+++++SKIEAGK+ L + F L +LL+E+ +++ I +G+ + + D
Sbjct: 653 LLTLINNILDVSKIEAGKITLNSKNFYLVRLLDEIEELFKLKSINQGLQLYFEREDNI-- 710
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+++ D +KL+++L NL+SN+MKFT G I +R VK +S
Sbjct: 711 -PQYIQTDELKLREVLINLLSNAMKFTQVGGIYLR--VKTRS------------------ 749
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+ E P+ FEV+DTG GI ++ + +FE F Q ++
Sbjct: 750 -----------------TPETEPSTQTLYFEVEDTGVGILSEELSQLFEAFSQT-QSGKQ 791
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
QEG GLGL I Q V LM GEI + K G F FN+ + V E
Sbjct: 792 AQEGTGLGLAISQKFVELMGGEINV--KSQAGVGTIFSFNIQVNVVQPTE 839
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+V+D+ I K+ +L G + + NGKEA + I D P+ I M
Sbjct: 860 KLLIVDDNLINRKLLIQLLNPFGFELKEATNGKEAIE----IWQDWE------PH-LIWM 908
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM+G+ AT I+ + IIA+TA + + I+ AG D + KP Q+
Sbjct: 909 DMRMPVMDGYAATTQIKTTTK--GQATAIIAITASVLEEDRNIILSAGCDDFVRKPFQES 966
Query: 1084 KLLDVVK 1090
+ ++++
Sbjct: 967 IIFEMLE 973
>gi|406892946|gb|EKD38145.1| Sensor protein, partial [uncultured bacterium]
Length = 866
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 152/308 (49%), Gaps = 60/308 (19%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA----ENLGLIR 437
A E+AE + K+ LA+ SH++R + A+IGL L + T+L + L +
Sbjct: 79 QAKEEAESATRAKSDFLARMSHEIRTPMNAVIGLTNLTLK-----TELTPLQRDYLDDVH 133
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLD 495
S LLGI+N +++ SKIEAG+ EL + F++ ++L ++VDM+ +KG+++ ++D
Sbjct: 134 NASLHLLGIINDILDFSKIEAGRFELSNQSFSVQRVLGQLVDMFRVKAGEKGIELFFLVD 193
Query: 496 ---PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
P DG + GD ++ QIL NLV+NS+KFT G I I+
Sbjct: 194 KSVPLDG-------LEGDPGRVGQILINLVANSIKFTEHGAI--------------IVKV 232
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
R V D L E N + F V DTG GIP+DK +F+
Sbjct: 233 QREV-------------------DELPPAE-NTGHIGLLFSVQDTGSGIPEDKLPELFQP 272
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
F+QV ++ EG GLGL I Q +V LM G+I + + G F F LT +RE
Sbjct: 273 FMQVDGSSTRQHEGTGLGLTICQRLVGLMGGKIWLTTRVGA--GTTFYFTAQLTRRTDRE 330
Query: 673 ---RPDTD 677
RP +D
Sbjct: 331 PERRPVSD 338
Score = 103 bits (256), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 101/188 (53%), Gaps = 17/188 (9%)
Query: 920 PNPLNKL-------KSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDA 972
P P+ K FG +G S S + V A+ + K + G + L+VED+
Sbjct: 444 PRPITSFALLAEIGKVFGEVSGYPGSGPERSAESVVARDE--IDLKKIRGARVLLVEDNE 501
Query: 973 IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG 1032
+ K A+L +G EV NGKEA L + R+ G+ YD ++MD EMPVM+G
Sbjct: 502 LNRKFAVALLNIMGLWVEVATNGKEAIAR----LEEGRR-GERSRYDAVLMDIEMPVMDG 556
Query: 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDV-VKS 1091
+ ATRLIR + + +P+IA+TAHA+ G+ K +DAGMD +L+KP+ + +L + VK
Sbjct: 557 YTATRLIRAD--SFFASLPVIAMTAHALTGIEQKCLDAGMDDYLSKPIDEPQLRKILVKH 614
Query: 1092 IDETMEKQ 1099
I Q
Sbjct: 615 IQSPARSQ 622
>gi|310640534|ref|YP_003945292.1| sensor protein [Paenibacillus polymyxa SC2]
gi|386039674|ref|YP_005958628.1| phytochromeB [Paenibacillus polymyxa M1]
gi|309245484|gb|ADO55051.1| Sensor protein [Paenibacillus polymyxa SC2]
gi|343095712|emb|CCC83921.1| phytochromeB [Paenibacillus polymyxa M1]
Length = 891
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 143/285 (50%), Gaps = 44/285 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AER K+ L+ SH++R + IIG+ L D + + +I + S
Sbjct: 629 IRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLL-ADTELDEEQRSYIDIITSSS 687
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
L+ ILN ++++SKIEAGKM L+ E F L ++ V D++ ++KG+ + D
Sbjct: 688 NALMQILNEILDLSKIEAGKMSLLHESFVLEDVVGSVADLFMTQAMEKGIQLEWH-VDQE 746
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ G + GD V+++QIL NLVSN++KFT GH+++ V++K++ S R KC
Sbjct: 747 MPGM--LVGDHVRIRQILVNLVSNAIKFTERGHVNI--FVERKAY------SRRK--KKC 794
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
L EF V DTG GIP D+Q+ +F+ F Q+
Sbjct: 795 L----------------------------IEFSVTDTGIGIPADRQHLLFQPFSQLHPAL 826
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I +++V LM G I + E RG FRF + L
Sbjct: 827 NRKYGGTGLGLSICKNLVKLMGGSIGVDSDEA--RGATFRFQLDL 869
>gi|158338757|ref|YP_001519934.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
gi|158308998|gb|ABW30615.1| two-component hybrid sensor and regulator, putative [Acaryochloris
marina MBIC11017]
Length = 834
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 136/281 (48%), Gaps = 46/281 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++A++ + K+ LA SH++R L AI+G +L ED T L +I +
Sbjct: 360 ARQKADQANRAKSEFLASMSHELRTPLNAILGFSQLMSEDQAISTQQQNTLQIINRSGEH 419
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V++MSKIEAG+ L +FNL LL+ + DM+ KG+ + L D +
Sbjct: 420 LLELINDVLDMSKIEAGRTTLNPADFNLHGLLQSLYDMFNLKAQSKGLKLALK-LDDHLP 478
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
H GD KL+Q+L NL+ N++KFT G +S+ A + +++ +
Sbjct: 479 QFIH--GDESKLRQVLINLIGNAIKFTEAGEVSITAGMAEQTGDGE-------------- 522
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
L F V+D+G GI D+ IF+ F+Q K +
Sbjct: 523 -------------------------LSLTFAVEDSGPGIAPDEVERIFDPFIQAKSSQA- 556
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
Q+G GLGL I V LMKG+I++ K RG FRF +
Sbjct: 557 -QQGTGLGLAISAQFVRLMKGDISVCSK--LSRGSIFRFTI 594
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED + + L +G + + NG+EA S L I M
Sbjct: 623 RILVVEDHLDSQLLLQSWLTSVGFEVKTANNGREAVSQFQAWHSHL-----------IWM 671
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIP---IIALTAHAMAGVASKIVDAGMDFHLTKP 1079
D MPVM+G +ATR IR ++ + P I+ALTA KI+ AG + + KP
Sbjct: 672 DMRMPVMDGMQATRAIRALVQESESQAPEPVILALTASVFEENREKILSAGCNKFVRKP 730
>gi|183222624|ref|YP_001840620.1| putative two-component sensor [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189912658|ref|YP_001964213.1| signal transduction histidine kinase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167777334|gb|ABZ95635.1| Signal transduction histidine kinase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167781046|gb|ABZ99344.1| Putative two-component sensor [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 536
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 150/325 (46%), Gaps = 57/325 (17%)
Query: 363 IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED 422
+++ RE L ++ +A++ S KT LA SH++R L AI+G+ + E
Sbjct: 130 VSQQVTREKLLREQMVVAKEREVEAKKASQAKTDFLASMSHEIRTPLNAILGMADTLTE- 188
Query: 423 ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY 482
N + E L ++R K L I+N ++++S+IE+GK+E+ EF++ LL+E + ++
Sbjct: 189 TNLTNEQMEYLTVLRNSGKALYNIINDILDLSRIESGKLEIEHIEFSIRDLLKETISLFL 248
Query: 483 HVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKK 542
KG+ + D + ++GD +++QIL NL+ N+MKFT G I V A++
Sbjct: 249 MKAKSKGIQISYSVSDDI---AEQIKGDSTRIQQILINLIGNAMKFTEIGKIYVDASL-- 303
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
+++ S CL V+DTG GIP
Sbjct: 304 ----------SQDQKSLCLI-------------------------------VEDTGIGIP 322
Query: 603 KDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
+K NSIFE F QV + G GLGL I + ++ +M GEI++ + +G F N
Sbjct: 323 NEKLNSIFESFTQVDSSTTRRYGGTGLGLTITKKLILMMNGEISVQSQLG--KGSKFVLN 380
Query: 663 VLLTAVCERERPDTDEEDPRTHNDW 687
+ + R D H W
Sbjct: 381 IPYEGLVHR--------DSNIHQHW 397
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 23/159 (14%)
Query: 935 ASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRN 994
++I H L+ A++ KC + L+ ED + + L K + + +N
Sbjct: 391 SNIHQHWLDLELPDAENFPKC--------RILLAEDSEENVFIIKTFLRKYPIELVIAKN 442
Query: 995 GKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVH----I 1050
GK A ++ +D ++MD +MP M+G EAT+ IR E ++ I
Sbjct: 443 GKIALQMF-----------QSEKFDIVLMDMQMPEMDGLEATKQIRLYEHNQNIDPLFAI 491
Query: 1051 PIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
PIIA++A+ SK AG+ +++KP++K ++L ++
Sbjct: 492 PIIAISANVQKEDISKSFMAGITSYISKPVRKIEILKLI 530
>gi|119483406|ref|ZP_01618820.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
gi|119458173|gb|EAW39295.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
Length = 1627
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 151/290 (52%), Gaps = 23/290 (7%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E A+ + K+ LA SH++R L AI+G +L H D + + + +I +
Sbjct: 1118 AKETADAANKAKSEFLANMSHELRTPLNAILGFTQLMHNDPALSGEYQQYIHIISQAGEY 1177
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N ++EMSKIEAG++ L E F+L LL + +M KG+ + D CD +V
Sbjct: 1178 LLNLINDILEMSKIEAGQLTLNENCFDLHCLLNSLEEMLQLKAKLKGLQLQFD-CDLNV- 1235
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRA----AVKKKSFKQDIIASNRNVIS 558
+ D KL+Q+L NL++N++KFT G++++R +K SF D N++ +
Sbjct: 1236 -PQFIATDDKKLRQVLINLLNNAIKFTESGYVTLRVFSQPLLKHGSFSGD----NQSELV 1290
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPN---LLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
K L+ + E + H PN L+ FEV+DTG GI + + +FE F Q
Sbjct: 1291 KQLTPI-LPASESLSEAPTNH-----PNHLELIPIYFEVEDTGLGIAPHELDRLFEAFSQ 1344
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
E EG GLGL I Q V LM GEI ++ +PG G F F +++
Sbjct: 1345 T-EAGFKSSEGTGLGLPISQRFVQLMGGEIKVS-SQPG-VGSIFAFKIIV 1391
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 13/127 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED + +L +G + NG+EA I S + D I M
Sbjct: 1419 RILVVEDKFSNRLLLLKLLQSIGFDVKEAHNGQEAI----TIWSSWKP-------DLIFM 1467
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVMNG+EAT+ I+ E IIALTA A I+ AG D + KP Q++
Sbjct: 1468 DIRMPVMNGYEATQYIKSTPE--GNQTVIIALTASAFEEDRQMILSAGCDDFIRKPFQEE 1525
Query: 1084 KLLDVVK 1090
++L V++
Sbjct: 1526 EILTVIR 1532
>gi|392308784|ref|ZP_10271318.1| GGDEF domain protein [Pseudoalteromonas citrea NCIMB 1889]
Length = 1385
Score = 130 bits (327), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 162/327 (49%), Gaps = 48/327 (14%)
Query: 351 AGVISLGLFII-LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASL 409
A +I F+I L + +++ L A +A ++AE + K+ LA SH++R +
Sbjct: 813 AEIIRQKQFVIKLEEQVSEKTASLEAQASDLADALKEAEAATQLKSEFLANMSHEIRTPM 872
Query: 410 AAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFN 469
+IG+++L +++N +D A ++ + + ++ LL ++N +++ SKIEA K+EL +FN
Sbjct: 873 NGVIGMLDLL-KNSNLSSDQAHSVNIASSSAQSLLTLINDILDFSKIEADKLELEHIDFN 931
Query: 470 LAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT 529
L +L+E++ + +KGV+V+LD D + HV D +++Q+L N++SN++KFT
Sbjct: 932 LTELIEQLSESMTLAAQQKGVEVILDLAD---IHHPHVTSDPGRIRQVLTNIISNAIKFT 988
Query: 530 SEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQ 589
G I V A + +N N I C
Sbjct: 989 EHGEIVVTAKLSSAD-------NNNNTILTC----------------------------- 1012
Query: 590 FEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIAD 649
++ DTG GI K +++F+ F QV + G GLGL I + + L+ G+I+++
Sbjct: 1013 ---QITDTGIGIEHSKIDTLFDSFSQVDASTTRKYGGTGLGLSITRRLCQLLGGDISVSS 1069
Query: 650 KEPGERGVCFRFNVLLTAVCERERPDT 676
+G CF LL A + PDT
Sbjct: 1070 TLG--KGSCFEITCLLDA--NTQLPDT 1092
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 9/138 (6%)
Query: 951 SDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLR 1010
SD C+ + L+VED+ + V +L K+G V NG EA +L
Sbjct: 1244 SDSDCTWSA--HSRVLLVEDNKVNQLVALKLLSKVGIDTVVAENGVEA------LLKLKE 1295
Query: 1011 KEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQY-DVHIPIIALTAHAMAGVASKIVD 1069
E K + + ++MDC+MP M+G+EAT+ IRK + IPIIA+TA+AM G K +D
Sbjct: 1296 SEQKNVLFTLVLMDCQMPEMDGYEATKQIRKGSAGVQNQSIPIIAMTANAMQGDKQKCLD 1355
Query: 1070 AGMDFHLTKPLQKDKLLD 1087
AGM+ ++TKP++ +K+L+
Sbjct: 1356 AGMNDYITKPIEAEKVLN 1373
>gi|302786022|ref|XP_002974782.1| hypothetical protein SELMODRAFT_451443 [Selaginella moellendorffii]
gi|300157677|gb|EFJ24302.1| hypothetical protein SELMODRAFT_451443 [Selaginella moellendorffii]
Length = 823
Score = 130 bits (327), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 149/292 (51%), Gaps = 12/292 (4%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++AE + ++ LA SH++R L +IG+ + D +P D E L IRT +
Sbjct: 259 ARDKAESAAKARSEFLAVMSHEIRTPLNGVIGMASVLL-DTDPTPDQEECLETIRTSGEC 317
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL I+N +++ SKI+AGK+ + NL L+E+V M KGV++V+ D
Sbjct: 318 LLSIINDILDFSKIDAGKLTIAPVPCNLRSLVEDVGSMLALRVEPKGVELVVHY-DSPFF 376
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
V D ++L+Q+L NL+ NS KFT GHI V ++ KS ++ + A++ C
Sbjct: 377 A---VSVDTIRLRQVLINLIGNSCKFTHAGHILVNVSLLCKSCQKQLKATDFWECRSCSK 433
Query: 563 KL-FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
+ F+ +E D + VE F+F + D+G GI +DK +FE+F Q +
Sbjct: 434 DVNSFKGRELDSDAKHVKPVE------YFKFSISDSGIGIAEDKLGLLFEKFSQCDQLTS 487
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL + +S+V LM GEI + +E F + + V E+ R
Sbjct: 488 NMYGGTGLGLAVSKSLVELMGGEIVVESREGVGSTFSFSIPLEIDVVSEKNR 539
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 89/182 (48%), Gaps = 25/182 (13%)
Query: 917 CTDPNPLNK-------LKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLV 967
CT PL + LK+F S +S +A+ + K +K + K LV
Sbjct: 648 CTLSRPLRQSTLKDALLKTFNLLGFKSFEE--ASRPALASSNRSKAGDKAQTRRHPKVLV 705
Query: 968 VEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM 1027
VED+ + V +L LG +V NG+EA V K + YD I MDC M
Sbjct: 706 VEDNKVNQMVAIRLLNNLGCTVDVACNGQEAVSIV----------DKPVEYDLIFMDCHM 755
Query: 1028 PVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLD 1087
PV++G++A+RLIR +++ PI+ALTA M K ++ GMD ++ KP K +L
Sbjct: 756 PVLDGFQASRLIRSKQKL----TPIVALTAATMESELEKCLECGMDDYVRKPCTKQELQR 811
Query: 1088 VV 1089
V+
Sbjct: 812 VL 813
>gi|348029065|ref|YP_004871751.1| PAS domain-containing protein [Glaciecola nitratireducens FR1064]
gi|347946408|gb|AEP29758.1| PAS domain-containing protein [Glaciecola nitratireducens FR1064]
Length = 1045
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 142/294 (48%), Gaps = 47/294 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+NAT+ A+ S K+ LA+ SH++R + ++G+++L D +D L + + +
Sbjct: 304 LNATKAAQEASNAKSEFLARMSHEIRTPMNGVLGMIDLLL-DTRLTSDQTHKLKVAKNSA 362
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
LL I+N +++ S++EAG+ME+ +FNL Q +E V KG+++++D D
Sbjct: 363 SSLLTIINDILDFSRVEAGRMEIESLDFNLPQQIENVAQTLAIRSDAKGIELIVDVSD-- 420
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ V GD V+L+Q+L NL+SN++KFT G I VRA K+ Q
Sbjct: 421 -IQQKMVVGDAVRLRQVLTNLISNAIKFTEVGQIVVRA----KTINQG------------ 463
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+ + E V+DTG GIP K +FE F+QV +
Sbjct: 464 -------------------------DTTRLECSVEDTGIGIPDSKLEHLFESFMQVDTST 498
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
G GLGL I + ++ LM G I ++ +G F F++ L ++P
Sbjct: 499 TRVYGGSGLGLAICERLIELMGGRIQVS--SSINKGTIFSFDINLKTSLLEDKP 550
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 75/119 (63%), Gaps = 10/119 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+VED+++ V +L K G ++ V +G A + I S+L + PY I+M
Sbjct: 708 KVLIVEDNSVNQLVAEGLLKKFGLQYGVAIDGSIAIQTL--IQSELDQ-----PYTLILM 760
Query: 1024 DCEMPVMNGWEATRLIRKEE--EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
DC+MPV++G++AT IR+ + E+Y +IPIIA+TA+AM G K + +GM+ ++ KP+
Sbjct: 761 DCQMPVLDGYKATAKIRQGDAGERYK-NIPIIAMTANAMKGDREKCLQSGMNDYVPKPI 818
>gi|303248462|ref|ZP_07334721.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
gi|302490173|gb|EFL50092.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
Length = 1324
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 144/282 (51%), Gaps = 41/282 (14%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA-NPGTDLAENLGLIRTCS 440
+A E+AE S K LA SH++R L A++G V+L D P E L ++ +
Sbjct: 804 DALERAEGASQAKGAFLANMSHEIRTPLNAVLGYVQLMLADRLEPRQR--ERLTVVEESA 861
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
LL I+N +++ SKIEAG+MEL E F+L + LE V+ + KG+D+VLD + +
Sbjct: 862 GTLLSIINDILDYSKIEAGRMELKAEPFDLVRGLEGVLKEQEVLAKAKGLDLVLDIAE-N 920
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
V G+ VRGD ++L+Q+L NLV+N++K+T +G + + A+ + C
Sbjct: 921 VPGA--VRGDGLRLRQVLRNLVNNAVKYTDKGGVRLGVAIAD---------------APC 963
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+ EG L F V DTG GIP ++Q +IF+ F Q+
Sbjct: 964 AAS----GGEG--------------GRLWLRFTVADTGIGIPYEQQETIFDSFTQIDGGL 1005
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
Q G GLGL I + + LM G I++ + PG+ G FR
Sbjct: 1006 TKRQAGTGLGLAICRRLAGLMGGTISL-ESTPGQ-GSAFRLE 1045
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L+VED+ + S +L G V NG+ A D++ A D ++MD
Sbjct: 1075 ILLVEDNRVNRVFASDLLENRGHTVAVAENGRAALDYLA-----------AHQVDVVLMD 1123
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
+MPVM+G ATR IR D +P+I L+A+AM + + AG+D ++ KP+
Sbjct: 1124 IQMPVMDGLAATRAIRAGHPPIDPDLPVIGLSAYAMDQERERFLAAGLDDYIIKPIDVGA 1183
Query: 1085 LLDVVKSI 1092
VV+ +
Sbjct: 1184 FFAVVRDV 1191
>gi|226954327|ref|ZP_03824791.1| GacS-like sensor kinase protein [Acinetobacter sp. ATCC 27244]
gi|226834905|gb|EEH67288.1| GacS-like sensor kinase protein [Acinetobacter sp. ATCC 27244]
Length = 936
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 142/308 (46%), Gaps = 50/308 (16%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + +K+ LA SH++R L +I G + L N + L IR
Sbjct: 273 ITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 332
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K +++
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ HV GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 393 ENI---PQHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEDDD------------I 437
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 438 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 469
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM+G+I D + P E+G F F TA + E
Sbjct: 470 ASVTRQFGGTGLGLAISKQLVHLMRGQIGFEDNQERAPTEKGSTFWF----TAAFKVEEE 525
Query: 675 DTDEEDPR 682
D E PR
Sbjct: 526 DAFVEHPR 533
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 12/179 (6%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKF--LVVEDDA 972
Q DP+ LN+ + A S +Q +A Q + + NG+ L V+D
Sbjct: 616 QMSLDPSMLNE---YRARPIYQPLSRRELIQLLANQPIFEQEPEDFNGQGLHVLAVDDHL 672
Query: 973 IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG 1032
L V A+LG+L +G++A D + + R E K+ P+D + MD +MPVM+G
Sbjct: 673 PNLIVLEALLGELNVTTTKALSGQKAIDLIQE-----RIEQKSPPFDLVFMDIQMPVMSG 727
Query: 1033 WEATRLIRKEEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ TR IR E + D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 728 IDTTRAIRSLESKLDTGMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|302760541|ref|XP_002963693.1| hypothetical protein SELMODRAFT_451444 [Selaginella moellendorffii]
gi|300168961|gb|EFJ35564.1| hypothetical protein SELMODRAFT_451444 [Selaginella moellendorffii]
Length = 825
Score = 130 bits (326), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 149/292 (51%), Gaps = 12/292 (4%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++AE + ++ LA SH++R L +IG+ + D +P D E L IRT +
Sbjct: 261 ARDKAESAAKARSEFLAVMSHEIRTPLNGVIGMASVLL-DTDPTPDQEECLETIRTSGEC 319
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL I+N +++ SKI+AGK+ + NL L+E+V M KGV++V+ D
Sbjct: 320 LLSIINDILDFSKIDAGKLTIAPVPCNLRSLVEDVGSMLALRVEPKGVELVVHY-DSPFF 378
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
V D ++L+Q+L NL+ NS KFT GHI V ++ KS ++ + A++ C
Sbjct: 379 A---VSVDTIRLRQVLINLIGNSCKFTHAGHILVNVSLLCKSCQKQLKATDFWECRSCSK 435
Query: 563 KL-FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
+ F+ +E D + VE F+F + D+G GI +DK +FE+F Q +
Sbjct: 436 DVNSFKGRELDSDAKHVKPVE------YFKFSISDSGIGIAEDKLGLLFEKFSQCDQLTS 489
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL + +S+V LM GEI + +E F + + V E+ R
Sbjct: 490 SMYGGTGLGLAVSKSLVDLMGGEIVVESREGVGSTFSFSIPLEIDVVSEKNR 541
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 89/182 (48%), Gaps = 25/182 (13%)
Query: 917 CTDPNPLNK-------LKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLV 967
CT PL + LK+F S +S +A+ + K +K + K LV
Sbjct: 650 CTLSRPLRQSTLKDALLKTFNLLGFKSFEE--ASRPALASSNRSKAGDKAQTRRHPKVLV 707
Query: 968 VEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM 1027
VED+ + V +L LG +V NG+EA V K + YD I MDC M
Sbjct: 708 VEDNKVNQMVAIRLLNNLGCTVDVACNGQEAVSIV----------DKPVEYDLIFMDCHM 757
Query: 1028 PVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLD 1087
PV++G++A+RLIR +++ PI+ALTA M K ++ GMD ++ KP K +L
Sbjct: 758 PVLDGFQASRLIRSKQKL----TPIVALTAATMESELEKCLECGMDDYVRKPCTKQELQR 813
Query: 1088 VV 1089
V+
Sbjct: 814 VL 815
>gi|237654499|ref|YP_002890813.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
gi|237625746|gb|ACR02436.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
Length = 921
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 141/294 (47%), Gaps = 60/294 (20%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC------HEDANPGTDLAENLG 434
+ A E AE S K+ LA SH++R + ++G+ EL HE + + EN G
Sbjct: 260 LRAKEAAEAASQAKSDFLATMSHEIRTPMNGVLGMTELLLDSGLNHEQRH-FAEAVENSG 318
Query: 435 LIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL 494
+ LLGI+N +++ SKIE+G +EL EF L LLE+ + M+ KK ++++
Sbjct: 319 ------RHLLGIINDILDFSKIESGHLELEAVEFELGDLLEDTLAMFAQPAEKKRLELIA 372
Query: 495 D-PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
D P + + C VRGD +L+QI+ NL +N++KFT G + VRA
Sbjct: 373 DLPPE---VRRC-VRGDPFRLRQIVGNLANNAIKFTERGEVVVRA--------------- 413
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
+L +G+ + V+DTG GIP Q IFE+F
Sbjct: 414 ---------RLLGEGTDGY----------------RLRISVEDTGIGIPPHAQQKIFEQF 448
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
Q+ + G GLGL I + +V LM GEI + D PG G CF ++ L A
Sbjct: 449 SQLDGSTTRQFGGTGLGLAICRRLVGLMGGEIGV-DSRPGA-GACFHIDLCLPA 500
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 76/148 (51%), Gaps = 16/148 (10%)
Query: 941 CSSLQQVAAQSDGKCSE---KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKE 997
CS+L+ V A +P G + L+ ED+ + +V A+L KLG V +G+E
Sbjct: 636 CSALRAVDAVPAATAVADEWRPTRGGRVLLAEDNPVNQQVGLAMLAKLGIAVRVANDGEE 695
Query: 998 AFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTA 1057
A K +D I+MDC MPV++G+EA+ IR E + +PI+ALTA
Sbjct: 696 AV-----------KLAATEAFDLILMDCHMPVLDGYEASAAIRASE--HAPRVPIVALTA 742
Query: 1058 HAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+ M G + + AGMD L KP ++L
Sbjct: 743 NVMEGNRERCLAAGMDDFLAKPYALEQL 770
>gi|428311153|ref|YP_007122130.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252765|gb|AFZ18724.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1152
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 145/272 (53%), Gaps = 24/272 (8%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L AIIG +L D++ + E LG+I+ + LL ++N+V++M
Sbjct: 644 KSRFLANMSHELRTPLNAIIGFTQLLTRDSSLNPEQQEYLGIIQRSGEHLLELINNVLQM 703
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIE G++ L + F+L LL+ + M+ K + +V D +V+ D K
Sbjct: 704 SKIEVGRVTLNKNNFDLYHLLDTLEAMFKLPVQNKNLQLVFDRTPTL---PQYVQTDESK 760
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
L+Q+L NL+ N++KFT+EG +++R A K KS + N+ K L N EG
Sbjct: 761 LRQVLINLLGNAIKFTTEGGVTLRIASKFKS------EESNNLPVKRL------NVEGSQ 808
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ--EGLGLGL 631
++ P L FEV+DTG GI ++ +S+FE F+Q T G Q EG GLGL
Sbjct: 809 PSSYQQHLKLQPVTLY--FEVEDTGFGIAPEEMDSLFEPFLQ---TQTGRQALEGTGLGL 863
Query: 632 GIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
I + V LM G+I ++ +G F F +
Sbjct: 864 PIARQFVQLMGGDIRVSSHLG--KGSIFHFEI 893
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCR--NGKEAFDHVCKILSDLRKEGKALPYDYI 1021
+ LVV+D + +L +G FEV NG+EA + L I
Sbjct: 923 RILVVDDRLESRVLLVKLLASVG--FEVLEAVNGQEAIELWSSWEPHL-----------I 969
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD MPVM+G+EAT+ I+ + + I+ALTA A S ++ AG D + KP +
Sbjct: 970 WMDMRMPVMDGYEATKRIKADLK--GQATAIVALTASAFEEERSVVLSAGCDDFVRKPFR 1027
Query: 1082 KDKLLD 1087
+ + +
Sbjct: 1028 ESVIFE 1033
>gi|428771474|ref|YP_007163264.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
aponinum PCC 10605]
gi|428685753|gb|AFZ55220.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
aponinum PCC 10605]
Length = 932
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 147/300 (49%), Gaps = 46/300 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++AE + K+ LA SH++R + AI+G ++ + EN+ +I+
Sbjct: 460 AKQKAEIANKTKSIFLANMSHELRTPMNAILGFSQIMMRSQTLSPEQLENISIIQRSGNY 519
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N+V+++SKIEAGKM L E+ F+L LLEE+ D+ KG+ + L+ D V
Sbjct: 520 LLNLINNVLDLSKIEAGKMTLNEKNFDLHALLEEIEDLLQLKAEDKGLQLNLE-IDTYV- 577
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
V D KL+Q+L NLV+N +KFT EG +++ ++ ++ + +
Sbjct: 578 -PRFVCTDETKLRQVLINLVNNGIKFTEEGGVNILVSLSNQTLEME-------------- 622
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
N +F V+DTG GI ++ + +FE F Q E
Sbjct: 623 -----------------------NQRYIKFAVEDTGAGIAQEDLSKVFEAFTQT-EVGRN 658
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPR 682
QEG GLGL I + V LM G+I I GE G F F +++T V ER D +PR
Sbjct: 659 VQEGTGLGLPISRRFVQLMGGDIEI-QSTLGE-GSIFSFEIVVTLVTER---DVQTHNPR 713
Score = 43.5 bits (101), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I MD MPVM+G+EAT+ I+ + IIALTA + + I+ AG D + KP
Sbjct: 775 IWMDMRMPVMDGYEATQYIKGTLKGNAT--AIIALTASVLEEEKAVILSAGCDDFIRKPF 832
Query: 1081 QKDKLLDVV 1089
++ + D +
Sbjct: 833 RESVIFDAI 841
>gi|254409964|ref|ZP_05023744.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196183000|gb|EDX77984.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1946
Score = 129 bits (325), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 152/298 (51%), Gaps = 56/298 (18%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLV------ELCHEDANPGTDLAENLGLI 436
A + AE + K+ LA SH++R + A+IG+ +L HE A + AE I
Sbjct: 1245 AKQIAEAANRAKSDFLATMSHEIRTPMNAVIGMTGLLLDTQLSHEQA----EFAET---I 1297
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VL 494
R + LL I+N +++ SKIE+GK+EL E+ FNL +EE +D+ +K +++ +
Sbjct: 1298 RNSGEALLTIINDILDFSKIESGKLELEEQPFNLRTCIEESLDLLTPKAAEKAIELAYLF 1357
Query: 495 DPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
DP + +RGD +L+QIL NL+SN++KFT +G ++V + K+ S
Sbjct: 1358 DPHTPNT-----IRGDITRLRQILVNLLSNALKFTHQGEVTVSVSSKRVS---------- 1402
Query: 555 NVISKCLSKLFFR-NKEGFDDLDALHSVERNPNLLQFE--FEVDDTGKGIPKDKQNSIFE 611
+ L +L R NKE Q+E F V DTG GIP D+ + +F+
Sbjct: 1403 ---PQSLEQLSHRTNKEQ-----------------QYEILFAVKDTGIGIPPDRLDRLFK 1442
Query: 612 EFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVC 669
F QV + H G GLGL I + + +M G I + + E G +G F F + + VC
Sbjct: 1443 AFSQVDSSTSRHYGGTGLGLVISKRLSEMMGGRIWV-ESEVG-KGSIFYFTI-VAPVC 1497
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 16/136 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ + +V +LG++G + +V NG E +L L ++ YD ++M
Sbjct: 1661 RILLAEDNVVNQQVGLHILGRMGYRADVAANGLE-------VLEALHRQS----YDVVLM 1709
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G +AT+ I +E + IIA+TA+AM G + AGMD +++KP++ +
Sbjct: 1710 DVQMPEMDGLKATQRICQEWSAEN-RPHIIAMTANAMRGDRETCLQAGMDDYISKPIRVE 1768
Query: 1084 KLLD----VVKSIDET 1095
+L+ V K + ET
Sbjct: 1769 ELVRSLQGVPKKVQET 1784
Score = 47.0 bits (110), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK+ L+V+D+A ++ + G +G++A D + ++G+ +D
Sbjct: 1512 LEGKRMLIVDDNATNRRILTLQGQSWGVLTRAAESGEQALDWL--------QQGET--FD 1561
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++D MP M+G IR++ + + IP++ LT+ + ++ +A LTKP
Sbjct: 1562 LAILDMHMPGMDGVNLASQIRRQPDGQE--IPLVMLTSIGKPENSGQLDEAKFAAFLTKP 1619
Query: 1080 LQKDKLLDVVKSI 1092
+++ +L +V+ +
Sbjct: 1620 IKQSQLYNVLMDV 1632
>gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1175
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 153/298 (51%), Gaps = 25/298 (8%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE + K+ LA SH++R + +IG+ L D + ++ +R+ +
Sbjct: 388 IQAKEHAEEATRAKSDFLANMSHEIRTPMNGVIGMTGLLL-DTDLDSEQQHYARTVRSSA 446
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCD 498
+ LL ++N +++ SKIEAG++++ +F+L +L + M +KG++++ +DP
Sbjct: 447 ESLLTVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEEKGLELICSMDPNV 506
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
S+ VRGD +L+QIL NLV N++KFT G + +R + + + R+ +S
Sbjct: 507 PSM-----VRGDSGRLRQILMNLVGNAVKFTEHGEVEIRVSKSE-------VVDQRSEVS 554
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
+ + G D + +++ F++ DTG GIP+DKQ+S+FE F QV
Sbjct: 555 DQPANRLSHEQTGIKDQYG------DSRIVELCFQIRDTGIGIPQDKQDSLFESFSQVDA 608
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE--RERP 674
+ G GLGL I + + +M G + E ++G F F V L E +ERP
Sbjct: 609 STTRKFGGTGLGLAISRQLAEMMGGTAGLESVE--DQGSTFWFTVRLGVQDEQQQERP 664
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV ED+ + +V +L K+G + + NG+EA + I PYD ++M
Sbjct: 826 RILVAEDNMVNQQVALGILKKMGLRADAVANGQEALHALENI-----------PYDLVLM 874
Query: 1024 DCEMPVMNGWEATRLIRKEE 1043
D +MP M G EATR IR E
Sbjct: 875 DVQMPEMGGLEATRRIRSME 894
Score = 40.8 bits (94), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 15/147 (10%)
Query: 952 DGKCSEKP----LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFD--HVCKI 1005
D + E+P L G + L+V+D++ ++ G G + NG A H K
Sbjct: 657 DEQQQERPVPACLQGVRTLIVDDNSTNREILRVRFGSWGMRPGEAANGSAALSMLHQAKA 716
Query: 1006 LSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVAS 1065
+D P+ ++D +MP M+G R I+++ + D + I+ +A G +
Sbjct: 717 END--------PFVLAVLDMQMPDMDGETLGRNIKEDGQLKDTRL-IMMSSATGQTGDSR 767
Query: 1066 KIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
++ + G D L KP+ +L ++ I
Sbjct: 768 RLHETGFDSILNKPVLPSELYASLEKI 794
>gi|117925742|ref|YP_866359.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117609498|gb|ABK44953.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 969
Score = 129 bits (324), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 147/281 (52%), Gaps = 49/281 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A EQAE + K+ LA SH++R + A+IG+ E+ E + + ++ +
Sbjct: 588 AREQAESANRAKSDFLAAMSHEIRTPMNAVIGMGEVLLE-TKLDQEQRHYIETLQHAGEA 646
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N+++++SKIE+G+MELVE++F+L +++ E ++ K+G+++ L+ + +
Sbjct: 647 LLDLINAILDLSKIESGRMELVEQDFDLHKMVVETCQLFQVQCRKQGIELNLNWEESN-- 704
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++ GD+ +++QIL NL+ N++KFT EG ++V
Sbjct: 705 -PTYIHGDQARIRQILFNLIGNAVKFTDEGSVTVE------------------------- 738
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+ S+E+ LL F++ D+G GIP DKQ +IF++F Q +
Sbjct: 739 ---------------IRSIEQEKTLL---FKITDSGIGIPADKQETIFQKFSQADSSLSR 780
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V MKG I + D E G+ G CF F +
Sbjct: 781 RHGGSGLGLTICRHLVEHMKGRIWV-DSEEGQ-GSCFSFTL 819
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 11/137 (8%)
Query: 955 CSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK 1014
+K + L+VED + L + V +G+EA L+ ++G
Sbjct: 837 AQQKQSKKARILLVEDSKDNQILIRTYLKREPHSLVVAWDGEEA-------LTRFNEDG- 888
Query: 1015 ALPYDYIMMDCEMPVMNGWEATRLIRK-EEEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
P+D I MD +MP+M+G+ AT IR E+ ++ PI+ALTAHA+ G + + AG +
Sbjct: 889 --PFDLIFMDMQMPIMDGYAATAHIRALEQARHLTATPIVALTAHALQGDEQRSLQAGCN 946
Query: 1074 FHLTKPLQKDKLLDVVK 1090
HLTKP++K LL ++
Sbjct: 947 AHLTKPIRKAHLLAAIR 963
>gi|411118665|ref|ZP_11391045.1| signal transduction histidine kinase [Oscillatoriales
cyanobacterium JSC-12]
gi|410710528|gb|EKQ68035.1| signal transduction histidine kinase [Oscillatoriales
cyanobacterium JSC-12]
Length = 695
Score = 129 bits (324), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 201/421 (47%), Gaps = 58/421 (13%)
Query: 379 KQMNATEQAERKSMN-----KTFALAKASHDVRASLAAIIGLVELCHEDANP-GTDLAEN 432
K+ AT Q+E+++ K LA SH++R L AIIG ++ ED DL +
Sbjct: 133 KEYLATLQSEKRAAETANRAKNEFLANMSHELRTPLNAIIGYSDILQEDLKAIAADLIPD 192
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
L I K LL I+N+++E++KIEAG+MEL E FN+A L+++VVD ++G +
Sbjct: 193 LEKIHHAGKHLLHIINNILELAKIEAGEMELCLERFNIAPLIKDVVDNLRPSFEQQGNTL 252
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
L D LG+ + D KL+Q+L NL+ N+ KFT G I++ V+++ + +I+
Sbjct: 253 SLHLTDQ--LGTLY--ADLGKLRQVLFNLLDNANKFTENGAITL--TVERRENSESLISD 306
Query: 553 N------RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQ 606
+ + ++ C + F SV PN F + DTG GIP +
Sbjct: 307 SGLELPPESQVASCKPQPSFPP-----------SV---PNASTLIFTIADTGIGIPASEL 352
Query: 607 NSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
+S+F+ F Q+ ++ G GLGL + Q HLM G IA+ PGE G F +
Sbjct: 353 SSVFQPFYQLDSSSTRKHGGAGLGLALSQRFCHLMGGTIAV-HSSPGE-GSTFVVQIPTD 410
Query: 667 AVCERERP---DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRV 723
V R +D R+ D FA+ E S ++L I + R
Sbjct: 411 VVEHRVSSALLASDTSSQRSPTD---------FANLM------ERSSLVLVINDD---RT 452
Query: 724 LKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSS 783
++ + ++LN + V N + LR + R++ P +I + P SSL D+ + A +
Sbjct: 453 IRDLMVHALNRQGLRVITAWNSEEGLR-LARELYPDAIVF--DPLSSLSDNWAVMAGIKA 509
Query: 784 D 784
D
Sbjct: 510 D 510
>gi|428208244|ref|YP_007092597.1| histidine kinase [Chroococcidiopsis thermalis PCC 7203]
gi|428010165|gb|AFY88728.1| histidine kinase [Chroococcidiopsis thermalis PCC 7203]
Length = 822
Score = 129 bits (324), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 157/342 (45%), Gaps = 46/342 (13%)
Query: 343 MLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKAS 402
++LV + G +S+G++ + RE + + A E AE ++ K+ LA S
Sbjct: 303 IVLVGLASVGCLSIGVYWLTRQLKISREQLENYSHRLEQKAQE-AEAANLAKSEFLANMS 361
Query: 403 HDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKME 462
H++R L AI+G +L D + ENL I + LL ++N V+ M+KIEAG+
Sbjct: 362 HELRTPLNAILGFTQLMSRDRSLSAAQLENLDTINRSGEHLLTLINDVLSMAKIEAGRTI 421
Query: 463 LVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLV 522
L E F+L +LL+ + +M KG+ ++ + + C VR D KL+Q+L NL+
Sbjct: 422 LNENSFDLYELLDSLEEMLRLKAEAKGLQLIFERTPE--VPQC-VRADESKLRQVLINLL 478
Query: 523 SNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVE 582
N++KFT G +R V+ K KQ++ S
Sbjct: 479 GNAIKFTQAGGAILR--VRTKQDKQEVSQS------------------------------ 506
Query: 583 RNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMK 642
P FEV+DTG GI + +F+ FVQ + H EG GLGL I Q V LM
Sbjct: 507 -PPTTCTLHFEVEDTGPGIAASELERLFKPFVQTEAGRKSH-EGTGLGLTISQQFVRLMG 564
Query: 643 GEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTH 684
GEIA++ G F F + ++ E P PR H
Sbjct: 565 GEIAVSTTLG--HGTIFSFEIPVSPAAVVEVP------PRQH 598
Score = 44.3 bits (103), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 13/120 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED ++ +L +G + NG+E I + + I M
Sbjct: 613 RILVVEDKWENRQLLVKMLESVGFEVREAENGEEG----VAIWESWQPQ-------LIWM 661
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM+G+EATR I+ + + IIALTA A + ++ AG + + KPL+++
Sbjct: 662 DMRMPVMDGYEATRQIKAHLKGHATI--IIALTASAFDEERAVVLSAGCNDFVRKPLREE 719
>gi|239907500|ref|YP_002954241.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239797366|dbj|BAH76355.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 1133
Score = 129 bits (324), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 139/289 (48%), Gaps = 56/289 (19%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA----ENLGLIR 437
A E AE + K+ LAK SH++R L A+IG+ EL GT+L+ + L R
Sbjct: 610 QAKEAAETANRAKSDFLAKMSHEIRTPLHAVIGMTELTL-----GTELSPQQRDALETAR 664
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
+ +LLGI+N V+++S+IEA +ELV ++F+L + L V +KG+ + L
Sbjct: 665 EAAGNLLGIINDVLDLSRIEAKGLELVIQDFDLRRTLAGVARTLRPQAARKGLFLTLAVA 724
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ HVRGD+ +++QIL NLV N++KFT EG ++V A
Sbjct: 725 PNT---PRHVRGDQGRVRQILLNLVGNAVKFTREGGVTVTVAAP---------------- 765
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+ +P Q E V DTG GI D+ IF+ F Q
Sbjct: 766 ------------------------DGDPG--QLELAVADTGIGIAPDRLERIFDMFTQAD 799
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
T + G GLGL I + +V M GEIA+ D PG+ G FR + LT
Sbjct: 800 RTVALNFGGTGLGLAICRELVRSMGGEIAV-DSVPGQ-GTVFRVKLRLT 846
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 19/134 (14%)
Query: 948 AAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILS 1007
A Q+D + PL + LV ED+ I +KV + L + G + V NG A + C
Sbjct: 862 APQADAR----PL---RVLVAEDNPINVKVATTFLNRRGHQATVAANGARALE--C---- 908
Query: 1008 DLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASK 1066
L E +D ++MD EMP ++G EATR +R + + +P+ A+TAHA+AG +
Sbjct: 909 -LGHET----FDLVLMDVEMPELDGMEATRRLRAGLAGEANRRVPVAAMTAHALAGSMER 963
Query: 1067 IVDAGMDFHLTKPL 1080
+ AGM L KPL
Sbjct: 964 CLAAGMTEFLPKPL 977
>gi|14530758|emb|CAC42409.1| putative osmosensor histidine Kinase [Populus x canadensis]
Length = 331
Score = 129 bits (324), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 137/254 (53%), Gaps = 12/254 (4%)
Query: 403 HDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKME 462
H++R +AA+IGL+++ D + N+ IR CS LL +LN+++++SK+E+GK+
Sbjct: 1 HELRTPMAAVIGLLDILICDDCLTNEQYANVTQIRKCSTALLRLLNNILDLSKVESGKLV 60
Query: 463 LVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLV 522
L + EF+L + LE ++DM+ V+ VLD D +RGD ++ QI NL+
Sbjct: 61 LEDAEFDLGRELEGLIDMFSVQCTNHNVEAVLDLSDEM---PKLLRGDSARVVQIFANLI 117
Query: 523 SNSMKFTSEGHISVRAAVK--KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHS 580
SNS+KFT+ GHI +R + ++ ++ + +C K R + + L
Sbjct: 118 SNSIKFTTTGHIILRGWCENLNNTYNDTQFHLDQKKM-RCAIKPKLRQQG-----NHLKK 171
Query: 581 VERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHL 640
+ N + FE+DDTG GI K S+FE F Q + G GLGL IV+++V+
Sbjct: 172 ACKKENKMILWFEIDDTGCGIDPRKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNK 231
Query: 641 MKGEIAIADKE-PG 653
M GEI + K PG
Sbjct: 232 MGGEIKVVKKNGPG 245
>gi|225419699|ref|ZP_03762002.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme
DSM 15981]
gi|225041663|gb|EEG51909.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme
DSM 15981]
Length = 926
Score = 129 bits (324), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 174/340 (51%), Gaps = 63/340 (18%)
Query: 318 QSVYVLAYDSNGLGSLVSRNNKLSLMLL--VLMFIAGVISLGLFIILIAKAAKREMFLCA 375
QS+ + Y S L L N +++L L+FI VI ++ ++ R L +
Sbjct: 492 QSLVSVGYTSLSLQELFYSNPLACILILSCALIFIMSVI------LMSVRSRMRNALLQS 545
Query: 376 ALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL 435
L E AE KS K+ L++ SH++R + AIIGL +L ++ + ++ + L
Sbjct: 546 RL-------EAAEAKSTAKSVFLSQMSHEIRTPMNAIIGLTDLTCKERDVPPEIEKKLKK 598
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
IR+ S+ LL ++N +++MS+IE GKME+ +++F+L+ +L+E+ M +KG++ +D
Sbjct: 599 IRSSSQYLLALINDILDMSRIENGKMEIEQKDFSLSLVLQELQSMMSTQAEQKGLEFQVD 658
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT-SEGHISVRAAVKKKSFKQDIIASNR 554
+ + GD V+L+Q+L NL+SN++KFT + G +++R V ++S ++
Sbjct: 659 ----FYVSHDWLAGDPVRLRQVLINLLSNAVKFTPAGGKVTLR--VNEQSCGEE------ 706
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
+++ F V DTG GIP + Q IF F
Sbjct: 707 ---------------------------------MEYRFSVQDTGVGIPYEDQERIFSSFE 733
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE 654
Q++ ++ H G GLGL I +++ LM G++ + EPG+
Sbjct: 734 QLR-PSISHSAGTGLGLPISRNIARLMGGDLEVK-SEPGK 771
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCR--NGKEAFDHVCKILSDLRKEGK 1014
E L G K L+ ED+ + ++ +L G VCR NG+EA D C G
Sbjct: 797 ENVLEGMKVLLAEDNDLNAEIAQELLAMAGVA--VCRAANGQEAVDRFCA--------GP 846
Query: 1015 ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDF 1074
+ ++MD MPV NG EA R IR D ++PIIA+ A+ + +GM+
Sbjct: 847 PGEFQAVLMDIRMPVKNGHEAAREIRASGRP-DANVPIIAMIANTFKEDEEEARASGMNG 905
Query: 1075 HLTKPLQKDKLLDVVK 1090
+ KP+ D+L ++
Sbjct: 906 FVPKPIDPDRLFTALR 921
>gi|357635233|ref|ZP_09133111.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
sp. FW1012B]
gi|357583787|gb|EHJ49120.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
sp. FW1012B]
Length = 735
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 150/311 (48%), Gaps = 54/311 (17%)
Query: 359 FIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVEL 418
FI +I ++R+ L AAL + A E AER S K+ +A SH++R + I+G++ L
Sbjct: 460 FIGVIQDISQRKE-LTAALCQ---AKETAERASRAKSDFMANMSHEIRTPMNGIMGMIHL 515
Query: 419 CHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVV 478
+P LA+ L L ++ LLGI+N V++++K+EAGK+ L+ E F L + + +
Sbjct: 516 ARLK-SPDPALAQYLDLADLSARHLLGIVNDVLDLAKMEAGKVRLLREPFALRREIRAAI 574
Query: 479 DMYYHVGIKKGVDVVL----DPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHI 534
+ +KG+ + L D D V GD +L+Q+L N+V N++KFT GH+
Sbjct: 575 EPMQAAAGEKGLALALAVAPDVPDA-------VTGDAGRLRQVLANVVGNAVKFTGTGHV 627
Query: 535 SVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEV 594
+R + D A + V+ + F V
Sbjct: 628 DIRVEL------DDDAAGDEAVVRR------------------------------LRFTV 651
Query: 595 DDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE 654
DTG GIP D+ + IFE F Q +A G GLGL I + +V M G I +A +E GE
Sbjct: 652 RDTGIGIPADRLDDIFESFEQAHTSAHVLYGGAGLGLPISRRLVEFMGGTIDVASRE-GE 710
Query: 655 RGVCFRFNVLL 665
G F F V L
Sbjct: 711 -GSTFTFTVWL 720
>gi|110833833|ref|YP_692692.1| phosphotransferase-histidine kinase family protein [Alcanivorax
borkumensis SK2]
gi|110646944|emb|CAL16420.1| phosphotransferase-histidinkinase, family protein [Alcanivorax
borkumensis SK2]
Length = 867
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 131/282 (46%), Gaps = 56/282 (19%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
A +S K+ LA+ SH++R L +IGL EL E +P E + LI + + L +
Sbjct: 363 ARAESQAKSLFLARMSHEIRTPLNGVIGLAELLRE-TDPSPRQQEYISLIDSAGRTLTAL 421
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-----PCDGSV 501
+N V++ +KIEAGK+ELVEE F+L LL E V M+ G V+LD P D
Sbjct: 422 INDVLDFAKIEAGKLELVEEHFDLPVLLAECVQMFNLPASDNGTLVILDVDPQTPSD--- 478
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
V GD ++L+QIL NLV N++KFT G + +
Sbjct: 479 -----VVGDAIRLRQILINLVGNAVKFTRNGRVVL------------------------- 508
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
L R + G L + F V DTG G+ + +Q +F+ F Q
Sbjct: 509 -SLVCRRQYGEAPL--------------YTFSVADTGIGLSQVEQAQLFQRFTQASANTA 553
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V LM GEI + PG+ G F F++
Sbjct: 554 QRYGGTGLGLSISRELVELMGGEIHV-HSAPGQ-GSRFSFSI 593
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGA-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+ L+VED+ + V L +LG V +G++ D +L D ++
Sbjct: 741 RVLIVEDNPVNQMVAKGYLQRLGVVHIIVAEDGQQGLDAFGAQSGNL---------DLVL 791
Query: 1023 MDCEMPVMNGWEATRLIRK-EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
MD +MPVM+G+ R IR E E+ I+AL+AHA++ + ++ +GMD L KPL
Sbjct: 792 MDLDMPVMDGFACARHIRDLEAERGWNPCQILALSAHAISEHSGRMSRSGMDGQLIKPL 850
>gi|254429940|ref|ZP_05043647.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Alcanivorax sp. DG881]
gi|196196109|gb|EDX91068.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Alcanivorax sp. DG881]
Length = 846
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 129/282 (45%), Gaps = 56/282 (19%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
A +S K LA+ SH++R L +IGL EL E +P E + LI + + L +
Sbjct: 342 ARAESQAKGLFLARMSHEIRTPLNGVIGLAELLRE-TDPSPRQQEYISLIDSAGRTLTAL 400
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-----PCDGSV 501
+N V++ +KIEAGK+ELVEE F+L LL E V M+ G V+LD P D
Sbjct: 401 INDVLDFAKIEAGKLELVEERFDLPTLLAECVQMFNLPASDNGTLVILDVDPHTPSD--- 457
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
V GD ++L+QIL NL+ N++KFT G + + ++ + +
Sbjct: 458 -----VVGDAIRLRQILINLIGNAVKFTRNGRVVLSLVCRRHGGEVPL------------ 500
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
F F V DTG G+ +D+Q +F+ F Q
Sbjct: 501 ----------------------------FTFAVTDTGIGLTQDEQTQLFQRFTQASANTA 532
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V LM GEI + PG G F F++
Sbjct: 533 RRYGGTGLGLSISRELVGLMGGEIHV-HSAPG-LGSRFSFSI 572
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 11/119 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLG-AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+ L+VED+ + VT L +LG A V +G++ D C D G+ D ++
Sbjct: 720 RVLIVEDNPVNQMVTKGYLERLGIAHIIVAEDGQQGVD--CFDAED----GE---LDLVL 770
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYD-VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
MD +MPVM+G+ + IR+ E Q+ ++AL+AHA++ ++ AGM+ L KPL
Sbjct: 771 MDLDMPVMDGFTSAHHIRELEAQHGWAPCQVLALSAHAISEQGGRVSRAGMNGQLIKPL 829
>gi|428221081|ref|YP_007105251.1| PAS domain-containing protein [Synechococcus sp. PCC 7502]
gi|427994421|gb|AFY73116.1| PAS domain S-box [Synechococcus sp. PCC 7502]
Length = 1059
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 135/280 (48%), Gaps = 57/280 (20%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A + AE + K+ LA SH++R L AI+G ++ D + + ENL +I +
Sbjct: 589 AIQTAETANQAKSAFLANMSHELRTPLNAILGFTQVLIRDRSLNAEQQENLNIISRSGEH 648
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V++MSKIEAGKM L E+ FNL ++L+ +V M K ++++ CD ++
Sbjct: 649 LLNLINDVLDMSKIEAGKMTLQEDNFNLKEMLDSLVQMMRLRAETKNLELI---CDYGII 705
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+V D KL+Q+L NL+SN++KFT G I+++
Sbjct: 706 -PHYVIADERKLRQVLLNLLSNAVKFTEAGSITLQVD----------------------- 741
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
D D LH F V DTG GI +Q +F F Q TA
Sbjct: 742 ----------QDQDFLH------------FAVQDTGLGIAIAEQERLFTAFSQ---TASS 776
Query: 623 H-QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
H QEG GLGL I Q +V LM G I++ + GV RF
Sbjct: 777 HAQEGTGLGLAISQKLVQLMHGHISVT----SQVGVGSRF 812
Score = 44.3 bits (103), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L V+D K+ + +L LG + + NG+EA D L I M
Sbjct: 846 RILSVDDRLENRKLITKLLTPLGFEVKEASNGQEAIDLWATWSPHL-----------ICM 894
Query: 1024 DCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MP+M+G+ AT I+ + Q + IIALTA + ++ +G D + KP ++
Sbjct: 895 DMRMPIMDGYAATEYIKSHLKGQATI---IIALTASVLEEERVIVMSSGCDDFIRKPFRE 951
Query: 1083 DKLL 1086
+ LL
Sbjct: 952 ETLL 955
>gi|406035762|ref|ZP_11043126.1| Sensor protein gacS [Acinetobacter parvus DSM 16617 = CIP 108168]
Length = 936
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 143/307 (46%), Gaps = 50/307 (16%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + +K+ LA SH++R L +I G + L N + L IR
Sbjct: 273 ITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLTNEQNLYLQTIR 332
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K +++
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ HV GD ++ KQIL NL+SN++KFT +G I VR ++ + I
Sbjct: 393 ENI---PQHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEDED------------I 437
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 438 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 469
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F TA+ + E+
Sbjct: 470 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWF----TALFKLEQA 525
Query: 675 DTDEEDP 681
D E P
Sbjct: 526 DETVEHP 532
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 12/179 (6%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKF--LVVEDDA 972
Q +PN LN+ + A S +Q + Q + + NG+ L V+D
Sbjct: 616 QMSLEPNMLNE---YRARPLYQPLSRRELVQLLGNQPVFEQESEDFNGQGLHVLAVDDHL 672
Query: 973 IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG 1032
L V A+LG+L +G++A D + + R E K P+D + MD +MPVM+G
Sbjct: 673 PNLIVLEALLGELNVTTTKALSGQKAIDMIQQ-----RIEQKLPPFDLVFMDIQMPVMSG 727
Query: 1033 WEATRLIRKEEEQYDV--HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ TR IR E D+ +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 728 IDTTRAIRSLESTLDIGMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|84687780|ref|ZP_01015651.1| sensor histidine kinase/response regulator [Maritimibacter
alkaliphilus HTCC2654]
gi|84664216|gb|EAQ10709.1| sensor histidine kinase/response regulator [Rhodobacterales
bacterium HTCC2654]
Length = 600
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 142/283 (50%), Gaps = 45/283 (15%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R + ++G+ +L E + ++A + IR+ + LL I+N V++
Sbjct: 209 KSAFLANMSHEIRTPMNGVVGMADLMAEH-DLDEEMASYVDTIRSSGRALLTIINDVLDY 267
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEA K+EL E F+L Q + +V+ + +KG+ ++LD + GD V+
Sbjct: 268 SKIEAAKLELHLEPFDLEQTILDVIALVMPSIREKGLKIMLDV---DMFLPTRYEGDPVR 324
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
++QIL NL+ N++KFT++GHI VR VI +G D
Sbjct: 325 VRQILTNLIGNAVKFTAKGHILVR------------------VIGM---------PDGGD 357
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
+H V+DTG GIP+D Q+ +F EF QV++ EG GLGL I
Sbjct: 358 ARQRVH------------VTVEDTGIGIPRDMQDHVFGEFNQVEDERNRSFEGTGLGLAI 405
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT 676
+ +V LM GE+ + +E G CF F + L V E PD
Sbjct: 406 TRQLVSLMLGEVWVESEE--GIGSCFGFALSLPVVAEASLPDA 446
>gi|409203280|ref|ZP_11231483.1| sensor protein [Pseudoalteromonas flavipulchra JG1]
Length = 1103
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 144/284 (50%), Gaps = 47/284 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A + AE+ + K+ LA SH++R + +IG++ L ++ T L + L +K
Sbjct: 551 QAKQAAEQGAQAKSEFLASMSHEIRTPMNGVIGMLSLLEDEHLTQTQL-HKVSLAMGSAK 609
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N +++ SKIEAGK+EL +F++ LL E+++ KKG++++LD
Sbjct: 610 SLLNLINDILDFSKIEAGKLELESLDFDVRALLGELIESVALQAQKKGLELILDVTQ--- 666
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
L V+GD +++QI+ NL+SN++KFT +G I +RA
Sbjct: 667 LEKPLVQGDPSRIRQIIINLISNAIKFTEQGEIIIRA----------------------- 703
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
F ++D N L+F V+DTG GIP+DK + +F +F QV +
Sbjct: 704 ---------WFSEVD---------NKLRFHCSVEDTGIGIPEDKADRLFAKFSQVDASTT 745
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL IV+ + LM G+IA++ + G F F V L
Sbjct: 746 RKYGGTGLGLAIVRQLCELMDGDIAVSSRFG--HGSQFEFFVTL 787
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 15/158 (9%)
Query: 931 AEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLG-AKF 989
A A ++SH L + A +++ KP + L+VED+ + V ++L KLG
Sbjct: 935 ANAKPLVTSHYLKLVRKANETEFTWP-KPC---RILLVEDNKVNQVVALSMLKKLGITHI 990
Query: 990 EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE--EQYD 1047
EV NG A + L+ ++ I+MDC+MP M+G+ T LIR E Y
Sbjct: 991 EVAENGLLAIEL-------LKSHQDECQFELILMDCQMPEMDGYRTTELIRDGAAGESYQ 1043
Query: 1048 VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+ I+A+TA+AM+G K ++AGM+ +LTKP+ ++ L
Sbjct: 1044 -GVKILAMTANAMSGDREKCLNAGMNDYLTKPISEEPL 1080
>gi|421464586|ref|ZP_15913276.1| GHKL domain protein [Acinetobacter radioresistens WC-A-157]
gi|400205339|gb|EJO36320.1| GHKL domain protein [Acinetobacter radioresistens WC-A-157]
Length = 934
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 154/356 (43%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 273 ITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNEQNLYLQTIR 332
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K +D+
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKQIDMAFYYG 392
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D ++ GD ++ KQIL NL+SN++KFT +G I VRA +++ +Q
Sbjct: 393 DDV---PQYIVGDVLRFKQILTNLISNAIKFTPDGEIIVRARMEQDGMEQ---------- 439
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
CL LH F V D+G G+ + +FE F Q
Sbjct: 440 --CL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 469
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM+G+I D + P E+G F F + E E+
Sbjct: 470 TSVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFGVEDEHEQQ 529
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
+ E H H SF A + VL+ Y+EN
Sbjct: 530 HPNFE-------------HIHVLSFLAHPATA---------------NVLRHYLEN 557
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 78/130 (60%), Gaps = 7/130 (5%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G L V+D L V A+LG+L +G+EA D IL + E K +D I
Sbjct: 663 GLHILAVDDHLPNLIVLEALLGELNVTTTKALSGQEALD----ILHH-QIERKEKLFDLI 717
Query: 1022 MMDCEMPVMNGWEATRLIRKEEE--QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
MD +MPVM+G + TR IR E + +VH+PIIALTAHA+A +K++ GMD ++TKP
Sbjct: 718 FMDIQMPVMSGIDTTRAIRSLESTLEGEVHLPIIALTAHALADEKNKLLKVGMDDYVTKP 777
Query: 1080 LQKDKLLDVV 1089
+Q D+L+ ++
Sbjct: 778 IQIDQLIHIL 787
>gi|421854961|ref|ZP_16287344.1| two-component sensor protein GacS [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
gi|403189622|dbj|GAB73545.1| two-component sensor protein GacS [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
Length = 934
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 154/356 (43%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 273 ITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNEQNLYLQTIR 332
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K +D+
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKQIDMAFYYG 392
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D ++ GD ++ KQIL NL+SN++KFT +G I VRA +++ +Q
Sbjct: 393 DDV---PQYIVGDVLRFKQILTNLISNAIKFTPDGEIIVRARMEQDGMEQ---------- 439
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
CL LH F V D+G G+ + +FE F Q
Sbjct: 440 --CL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 469
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM+G+I D + P E+G F F + E E+
Sbjct: 470 TSVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFGVEDEHEQQ 529
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
+ E H H SF A + VL+ Y+EN
Sbjct: 530 HPNFE-------------HIHVLSFLAHPATA---------------NVLRHYLEN 557
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 78/130 (60%), Gaps = 7/130 (5%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G L V+D L V A+LG+L +G+EA D IL + E K +D I
Sbjct: 663 GLHILAVDDHLPNLIVLEALLGELNVTTTKALSGQEALD----ILHH-QIERKEKLFDLI 717
Query: 1022 MMDCEMPVMNGWEATRLIRKEEE--QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
MD +MPVM+G + TR IR E + +VH+PIIALTAHA+A +K++ GMD ++TKP
Sbjct: 718 FMDIQMPVMSGIDTTRAIRSLESTLEGEVHLPIIALTAHALADEKNKLLKVGMDDYVTKP 777
Query: 1080 LQKDKLLDVV 1089
+Q D+L+ ++
Sbjct: 778 IQIDQLIHIL 787
>gi|262374290|ref|ZP_06067566.1| sensor protein gacS [Acinetobacter junii SH205]
gi|262310848|gb|EEY91936.1| sensor protein gacS [Acinetobacter junii SH205]
Length = 936
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 156/356 (43%), Gaps = 73/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + +K+ LA SH++R L +I G + L N + L IR
Sbjct: 273 ITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 332
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K +++
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ HV GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 393 ENI---PQHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEDDE------------I 437
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 438 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 469
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G I D + P E+G F F TA+ + E
Sbjct: 470 ASVTRQFGGTGLGLAISKQLVHLMHGHIGFEDNQERAPTEKGSTFWF----TALFKVEEQ 525
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
D E P HF E Q++ ++A VL+ Y+EN
Sbjct: 526 DEYVEHP-------------HF----------EHLQVVSYLAHPATASVLRSYLEN 558
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 12/179 (6%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKF--LVVEDDA 972
Q +PN LN+ + A S +Q ++ Q + + NG+ L V+D
Sbjct: 616 QMSLEPNMLNE---YRARPLYQPLSRRELVQLLSNQPIFEQEPEDFNGQGLHVLAVDDHL 672
Query: 973 IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG 1032
L V A+LG+L +G++A D + + R E K P+D + MD +MPVM+G
Sbjct: 673 PNLIVLEALLGELNVTTTKALSGQKAIDLIQE-----RIEQKLPPFDLVFMDIQMPVMSG 727
Query: 1033 WEATRLIRKEEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ TR IR E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 728 IDTTRAIRSLESTLDSGMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|307719098|ref|YP_003874630.1| two-component system sensor histidine kinase [Spirochaeta
thermophila DSM 6192]
gi|306532823|gb|ADN02357.1| two-component system, sensor histidine kinase [Spirochaeta
thermophila DSM 6192]
Length = 776
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 145/290 (50%), Gaps = 46/290 (15%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
E+A R +K+ LA SH++R L I+G+ EL ED + + + IR + LL
Sbjct: 121 EEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELL-EDTRLDEEQRDYVQQIRFSGEALL 179
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGS 504
++N +++ SKIEAGK+ + EF+L +++E+ V M KK ++VV+D +
Sbjct: 180 ALINDILDYSKIEAGKLPMEIIEFDLYEVVEQAVGMVSLQAHKKHLEVVVDIGEEV---P 236
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
V+GD ++++QIL NL +N++KFT +GH+ R +
Sbjct: 237 RKVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQL------------------------ 272
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
V+ + F V+DTG GIP++K++ +F F Q+ E+
Sbjct: 273 ----------------VQERKGVAWVAFTVEDTGIGIPENKKHRLFRVFSQIDESTTRRF 316
Query: 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
G GLGL I +S+V +MKGEI + KE GE G F F + L V E P
Sbjct: 317 GGTGLGLAISKSLVEMMKGEIGVRSKE-GE-GSSFWFLLPLPIVESYEPP 364
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 15/125 (12%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LV ED + ++ +L +LG + E+ NGKEA + +G AL D I MD
Sbjct: 524 LVAEDHIVNQELFLTILSRLGYRVELAGNGKEAVE-----------KGLALKPDLIFMDV 572
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP MNG++A R++R E+ Y+ P+IA+TA A + + AGM L KP +K L
Sbjct: 573 QMPEMNGYDAARVLR--EKGYEG--PVIAVTASAFREDRERALAAGMSDFLPKPFKKKDL 628
Query: 1086 LDVVK 1090
L V++
Sbjct: 629 LPVLQ 633
>gi|359459262|ref|ZP_09247825.1| two-component hybrid sensor and regulator [Acaryochloris sp. CCMEE
5410]
Length = 933
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 143/274 (52%), Gaps = 35/274 (12%)
Query: 375 AALIKQMNAT-EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENL 433
A L+KQ+ + ++AE + K+ LA SH++R L AI+G +L D N + + L
Sbjct: 415 AELLKQVRESRDKAEAANKAKSAFLANMSHELRTPLNAILGFSQLLARDENLTLEQKQTL 474
Query: 434 GLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV 493
I LL ++N V++MSKIEAGK+ L + +L LL+ + +M+ KG +V
Sbjct: 475 NTINRSGSHLLSLINDVLDMSKIEAGKIALNPKNCDLLPLLDSLQEMFALQAKSKG--LV 532
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
L+ S L S H+R D +L+Q+L NL++N++KFT G +++R
Sbjct: 533 LNIQKSSQLPS-HIRVDESRLRQVLINLLTNALKFTDVGSVTLR---------------- 575
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
V ++ L F N+E P+ L FEV+DTG GI ++ ++IFE F
Sbjct: 576 --VFTQPLPGPFSLNQETL-----------QPS-LSLCFEVEDTGIGIANNELDNIFEAF 621
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
+Q H EG GLGL I +HLM+G+I I
Sbjct: 622 IQTSSGRRSH-EGAGLGLAICHHFIHLMEGDIQI 654
Score = 44.3 bits (103), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED+ ++ ++ +LG + + NG+ A + C + I M
Sbjct: 697 RMLIVEDNPENRQILKRLMTELGFEVQTVDNGQAAVE--C---------WQTWRPHMIWM 745
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYD----------VHIP--------IIALTAHAMAGVAS 1065
D ++P++NG+EAT+ IR E Q + I IIA++A +
Sbjct: 746 DWQLPILNGYEATKAIRSLEAQDQDTGDLASQNAIEITDRSPERTIIIAVSASVFEDTQA 805
Query: 1066 KIVDAGMDFHLTKPLQKDKLLDVV 1089
+ D G D L KP Q L +++
Sbjct: 806 ECEDVGCDDFLCKPYQPSMLYELL 829
>gi|120601365|ref|YP_965765.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
gi|120561594|gb|ABM27338.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
Length = 1080
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 135/284 (47%), Gaps = 48/284 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLIRTC 439
+ A E+AER+S LA +H+VR + IIGL+++ P L E+L ++R+
Sbjct: 253 VGARERAERESKAMADFLAAITHEVRTPMTGIIGLLDISLRGQLEP--RLREHLEIVRSS 310
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
S LL ++N V++ S+IEAGK+ + F L + +E+V+D++ ++ V +VLD
Sbjct: 311 SHALLDVINGVLDFSRIEAGKLRIERIPFALRESVEDVLDLFRAHLAERDVALVLDMASD 370
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
C V GD +L+Q+L N+V N+ KFT +G I VR I+ R
Sbjct: 371 L---PCKVAGDPTRLRQVLVNIVGNAFKFTEQGEIVVR------------ISHERQGDGS 415
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
L F V DTG GIP + + +FE F Q +
Sbjct: 416 VL----------------------------LRFAVRDTGVGIPAEARKRLFEMFSQADAS 447
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V LM G I + D PG RG FRF V
Sbjct: 448 VARRFGGSGLGLAIARELVRLMGGSIEV-DSTPG-RGTVFRFTV 489
Score = 47.4 bits (111), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 24/163 (14%)
Query: 939 SHCSSLQQVAAQSDGKCSEKP-------LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEV 991
+ ++ V A DG +++P L G + LV EDD + V +L G +
Sbjct: 666 TQPGAMPSVGASGDGHDADQPVHEGASGLEGMRVLVAEDDDVSRLVLREMLTGFGVQVNE 725
Query: 992 CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP 1051
+G H A PYD +++D +MPV++G+ +R + V P
Sbjct: 726 TADGATMLAHFA-----------AAPYDVVLIDVQMPVLDGFATLERLRALPDGDTV--P 772
Query: 1052 IIALTAHAMAGVASKIVDAGMDFH--LTKPLQKDKLLDVVKSI 1092
+ TA ++ +++ + G+ + KPL+ + L+ ++ +
Sbjct: 773 VALFTAQKLS--VAELAERGIRVAGVVEKPLEMETLVAFLRGL 813
>gi|428213831|ref|YP_007086975.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002212|gb|AFY83055.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 2926
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 152/299 (50%), Gaps = 35/299 (11%)
Query: 375 AALIKQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENL 433
A L +Q+ A E A++ + K+ LA SH++R+ L AI+G +L + + + EN+
Sbjct: 2434 AELYQQVEKAREAADKANQAKSAFLANMSHELRSPLNAILGFAQLLLSNPSLSQEAKENV 2493
Query: 434 GLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV 493
+I + LL ++N +++++KIE+G+ +VE FNL+ LL+++ M+ KG+ V
Sbjct: 2494 AIIHRSGEHLLTLINDILDLAKIESGRTTIVETNFNLSHLLDDLQSMFRLKAQSKGLGFV 2553
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
+ + S ++R D +KL+Q+L NL+ N++KFT G I V +
Sbjct: 2554 V---ERSPEVPEYIRTDEIKLRQVLINLLGNAIKFTQRGQIYV---------------AM 2595
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
R + EG L ++E P L EV DTG GI +++ + +F+ F
Sbjct: 2596 RGI-----------TPEGRSSLSVPDTLE--PQTLNLLCEVSDTGPGIAQEELDHLFQAF 2642
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
VQ T L +EG GLGL I + V LM G I + + GE G F F + + E E
Sbjct: 2643 VQTS-TGLEAREGTGLGLSISRKFVELMGGSIEVR-SQIGE-GSTFSFEIPVKVAGEIE 2698
>gi|344941765|ref|ZP_08781053.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
gi|344262957|gb|EGW23228.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
Length = 1247
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 161/346 (46%), Gaps = 50/346 (14%)
Query: 370 EMFLCAALIKQMNATEQAERKSM-----NKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
EM A L Q NA+ +A R + KT LA SH++R + ++G+++L +D
Sbjct: 504 EMMALALLQNQANASLEAARDAALQVAHTKTEFLANMSHEIRTPMNGVLGMLDLL-QDTQ 562
Query: 425 PGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHV 484
+ + + + ++ LL I+N +++ SK+EAGK+EL + EFNL L+EEV +
Sbjct: 563 LSREQWDLIDIAANSAESLLTIINDILDFSKLEAGKIELEQIEFNLPDLVEEVCTLLSSR 622
Query: 485 GIKKGVDV-VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKK 543
KG+++ P D + +GD +++Q+L NL+ N++KFT +G +SV V KK
Sbjct: 623 AHSKGLELNCFLPTDLPL----RWQGDPTRIRQVLTNLIGNAVKFTEQGEVSVTVRVSKK 678
Query: 544 SFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVER----NPNLLQFEFEVDDTGK 599
DD DA + R P+L FEV DTG
Sbjct: 679 -----------------------------DDTDAASAPGRFAADTPSLTILRFEVVDTGI 709
Query: 600 GIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
GI + Q +F+ F Q + G GLGL I + +V LM G I + + +G F
Sbjct: 710 GITAEAQARLFQAFSQADSSTSRRYGGTGLGLSISKDLVMLMNGNIGV--ESALGQGANF 767
Query: 660 RFNVLLTAV-CERERPDTDEEDPR---THNDWPQTGLHQHFASFWG 701
F + L AV E P + D R ++ + H+ S WG
Sbjct: 768 WFTLPLAAVDNEAPAPQANFCDKRVLIVDDNATNRMILTHYLSNWG 813
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 21/135 (15%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
+ K+ LVVED+ + KV + L K K ++ NG+ A D + E +A YD
Sbjct: 933 SSKRVLVVEDNKVNQKVILSQLAKFQLKPDLANNGQVALDQL---------ERQA--YDL 981
Query: 1021 IMMDCEMPVMNGWEATRLIRKEE----------EQYDVHIPIIALTAHAMAGVASKIVDA 1070
+ MDC+MP+M+G+EATR++R+ E + +IALTAHA AG K + A
Sbjct: 982 VFMDCQMPIMDGYEATRILREREIAGACPEHGRGSGKLRTSVIALTAHASAGEREKCLSA 1041
Query: 1071 GMDFHLTKPLQKDKL 1085
GMD +L+KP + L
Sbjct: 1042 GMDDYLSKPASRSDL 1056
Score = 47.8 bits (112), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K+ L+V+D+A + + L G NG A D + + LR E PYD ++
Sbjct: 790 KRVLIVDDNATNRMILTHYLSNWGFTLSEADNGPAALDELEAAV--LRNE----PYDLLL 843
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D +MP M+G+ R I + D P I L++ ++ ++ +G L KP+++
Sbjct: 844 SDMQMPGMDGFALARAIIENPAIADT--PRILLSSGSIGSQVERLA-SGFTQSLLKPVRQ 900
Query: 1083 DKLLDVV 1089
+L D V
Sbjct: 901 SQLFDAV 907
>gi|434405267|ref|YP_007148152.1| bacteriophytochrome (light-regulated signal transduction histidine
kinase) [Cylindrospermum stagnale PCC 7417]
gi|428259522|gb|AFZ25472.1| bacteriophytochrome (light-regulated signal transduction histidine
kinase) [Cylindrospermum stagnale PCC 7417]
Length = 998
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 149/315 (47%), Gaps = 47/315 (14%)
Query: 359 FIILIAKAAKREMFLCAALIKQM---NATEQAERKSMNKTFALAKASHDVRASLAAIIGL 415
F I +A+ + + L A QM A +QAE + K+ LAK SH++R L AI+G
Sbjct: 495 FAIEVAQEMRNNLMLAALEFSQMALQEAAQQAEIANRAKSHFLAKMSHELRTPLNAILGF 554
Query: 416 VELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLE 475
+L + + + ENL +I + LL +++ V+EMSKIEAG++ L E F+L +L+
Sbjct: 555 TQLITRNGSLSPEDQENLDIINRSGEHLLILISDVLEMSKIEAGQLTLNESYFDLHRLIY 614
Query: 476 EVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHIS 535
+ +M KG+ +V + + C GD KL+QIL NL+ N++KFT G+I+
Sbjct: 615 SIQEMLALKASDKGLSLVTEIAENVSQFVC---GDEGKLRQILINLIGNAVKFTIVGYIA 671
Query: 536 VRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVD 595
+R + S S+ + + EFE++
Sbjct: 672 LRVSYPSTS----------------------------------SSLATDQGKIVVEFELE 697
Query: 596 DTGKGIPKDKQNSIFEEFVQVKETALGHQ--EGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
DTG GI D IFE FVQ K G Q +G GLGL I + LM G++ + +
Sbjct: 698 DTGPGIAIDDLGLIFEAFVQAKS---GRQFMQGTGLGLAISRQFARLMGGDVTV--RSIL 752
Query: 654 ERGVCFRFNVLLTAV 668
G F V LT V
Sbjct: 753 GHGSTFTCQVQLTQV 767
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED ++ +L +G + NG EA D +C+ + P+ +I M
Sbjct: 793 RILVVEDVPENRQLIVKLLKSVGFEVRAAENGLEAID-ICQ---------EWEPH-FIWM 841
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MPVM+G EAT+ IR ++ D + IIALTA A I++ G D +TKP ++
Sbjct: 842 DIQMPVMDGREATQRIRAITQRKD--LKIIALTASAFEEDRKAILEIGCDDFVTKPFEET 899
Query: 1084 KLLD 1087
L D
Sbjct: 900 ILFD 903
>gi|46581465|ref|YP_012273.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
str. Hildenborough]
gi|387154673|ref|YP_005703609.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
gi|46450887|gb|AAS97533.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
str. Hildenborough]
gi|311235117|gb|ADP87971.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
Length = 1080
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 135/284 (47%), Gaps = 48/284 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLIRTC 439
+ A E+AER+S LA +H+VR + IIGL+++ P L E+L ++R+
Sbjct: 253 VGARERAERESKAMADFLAAITHEVRTPMTGIIGLLDISLRGQLEP--RLREHLEIVRSS 310
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
S LL ++N V++ S+IEAGK+ + F L + +E+V+D++ ++ V +VLD
Sbjct: 311 SHALLDVINGVLDFSRIEAGKLRIERIPFALRESVEDVLDLFRAHLAERDVALVLDMASD 370
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
C V GD +L+Q+L N+V N+ KFT +G I VR I+ R
Sbjct: 371 L---PCKVAGDPTRLRQVLVNIVGNAFKFTEQGEIVVR------------ISHERQGDGS 415
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
L F V DTG GIP + + +FE F Q +
Sbjct: 416 VL----------------------------LRFAVRDTGVGIPAEARKRLFEMFSQADAS 447
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V LM G I + D PG RG FRF V
Sbjct: 448 VARRFGGSGLGLAIARELVRLMGGSIEV-DSTPG-RGTVFRFTV 489
Score = 43.5 bits (101), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 24/163 (14%)
Query: 939 SHCSSLQQVAAQSDGKCSEKP-------LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEV 991
+ ++ V A DG +++ L G + LV EDD + V +L G +
Sbjct: 666 TQPGAMPSVGASGDGHDADQSVHEGGSGLEGMRVLVAEDDDVSRLVLREMLTGFGVQVNE 725
Query: 992 CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP 1051
+G H A PYD +++D +MPV++G+ +R + V P
Sbjct: 726 TADGATMLAHFA-----------AAPYDVVLIDVQMPVLDGFATLERLRALPDGDTV--P 772
Query: 1052 IIALTAHAMAGVASKIVDAGMDFH--LTKPLQKDKLLDVVKSI 1092
+ TA ++ +++ + G+ + KPL+ + L+ ++ +
Sbjct: 773 VALFTAQKLS--VAELAERGIRVAGVVEKPLEMETLVAFLRGL 813
>gi|17229771|ref|NP_486319.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17131370|dbj|BAB73978.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 1299
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 149/300 (49%), Gaps = 46/300 (15%)
Query: 369 REMFLCAALIKQMNATEQ-AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGT 427
R+ L A +++N +Q AE+ +M K+ LA SH++R + AIIG+ L D
Sbjct: 600 RQAQLLALQNEELNVAKQVAEKANMAKSNFLATMSHEIRTPMNAIIGMSGLLL-DTTLKP 658
Query: 428 DLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIK 487
+ + + IR S LL I+N +++ SKIE+GK+EL E+ F+L +EE +D+
Sbjct: 659 EQFDYVETIRNSSHTLLTIINDILDFSKIESGKLELEEQPFDLRLCVEEALDLLAPQAAS 718
Query: 488 KGVDVV--LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSF 545
KG++++ L+P D L V GD +++QIL NLVSN++KFT G I + K+K +
Sbjct: 719 KGIELMYQLEP-DTPTL----VVGDITRIRQILWNLVSNAVKFTKIGEICITIGAKQKIY 773
Query: 546 KQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDK 605
KQ +P +F+F V DTG GI +D+
Sbjct: 774 KQT-----------------------------------DPTRYEFQFAVQDTGIGIERDR 798
Query: 606 QNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ +F+ F QV + G GLGL I + + +M G++ + + +G F F L
Sbjct: 799 LHRLFKPFSQVDASMTRRYGGTGLGLAISKRLSEIMGGKMWVESQ--SHQGSIFYFTATL 856
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+VED + K+ +L LG + +V NG EA + + + L YD + M
Sbjct: 1033 KILLVEDVLVNQKIAMNMLHLLGYRTDVANNGLEALEALQRQL-----------YDVVFM 1081
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+GWE T IR+E + IIA+TAHA + + AGMD +++KP+ +
Sbjct: 1082 DIQMPEMDGWETTHKIRQEFSP-TLQPWIIAMTAHARPEDRQQCLAAGMDDYISKPISLE 1140
Query: 1084 KLLDVVK 1090
+ +K
Sbjct: 1141 DITTALK 1147
>gi|38347753|dbj|BAD01586.1| histidine kinase 3 [Zea mays]
Length = 1049
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 151/298 (50%), Gaps = 28/298 (9%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
QAE + K+ LA SH++R + ++G++++ D T + + + K L+
Sbjct: 437 QAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM-DTELDTTQQDFVVTAQESGKVLIN 495
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N V++++KIE+G++EL F++ +L+ V+ ++Y KG+++ +VL S
Sbjct: 496 LINEVLDLAKIESGRIELEAVPFDVRDILDNVISLFYEKSQAKGIEL-------AVLVSD 548
Query: 506 HVR----GDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ-----DIIASNRNV 556
V GD + +QI+ NLV NSMKFT +GHI V+ + K+ ++ D+ A NR +
Sbjct: 549 QVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFVQVHLVKELSRKGNNFCDVSAHNREI 608
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVE-----RNPN----LLQFEFEVDDTGKGIPKDKQN 607
+ + + + G + D+ S+E +N N ++ V+DTG GI KD Q
Sbjct: 609 LYDSDNSMLWNTLSGLEVADSWRSLENFTMFKNSNGETDTIRLAVRVEDTGIGITKDAQM 668
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
IF F+Q + G G+GL I + +V LM GEI K G F F +
Sbjct: 669 RIFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSG--VGSTFSFTAIF 724
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 28/156 (17%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK+ LVV+D+A+ KV + L K G+ +G +A D + +D
Sbjct: 902 LTGKQILVVDDNAVNRKVAAGSLKKYGSTVTCVDSGSDAIDML----------KPPHTFD 951
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHIPIIALTAHAMA 1061
MD +MP M+G+EATRLIR E++ + H+PI+A+TA +
Sbjct: 952 ACFMDVQMPEMDGFEATRLIRSIEKKINDMIMMGEISANNYGNKAHWHVPILAMTADVIQ 1011
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097
K + GMD +++KP ++ +L V ET E
Sbjct: 1012 ATFEKCMQCGMDGYVSKPFEEQQLYSAVAHFLETDE 1047
>gi|255320871|ref|ZP_05362045.1| sensor protein GacS [Acinetobacter radioresistens SK82]
gi|262380236|ref|ZP_06073391.1| sensor protein gacS [Acinetobacter radioresistens SH164]
gi|255302040|gb|EET81283.1| sensor protein GacS [Acinetobacter radioresistens SK82]
gi|262298430|gb|EEY86344.1| sensor protein gacS [Acinetobacter radioresistens SH164]
Length = 934
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 154/356 (43%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 273 ITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNEQNLYLQTIR 332
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K +D+
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKQIDMAFYYG 392
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D ++ GD ++ KQIL NL+SN++KFT +G I VRA +++ +Q
Sbjct: 393 DDV---PQYIVGDVLRFKQILTNLISNAIKFTPDGEIIVRARMEQDGMEQ---------- 439
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
CL LH F V D+G G+ + +FE F Q
Sbjct: 440 --CL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 469
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM+G+I D + P E+G F F + E E+
Sbjct: 470 TSVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFGVEDEHEQQ 529
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
+ E H H SF A + VL+ Y+EN
Sbjct: 530 HPNFE-------------HIHVLSFLAHPATA---------------NVLRHYLEN 557
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 78/130 (60%), Gaps = 7/130 (5%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G L V+D L V A+LG+L +G+EA D IL + E K +D I
Sbjct: 663 GLHILAVDDHLPNLIVLEALLGELNVTTTKALSGQEALD----ILHH-QIERKEKLFDLI 717
Query: 1022 MMDCEMPVMNGWEATRLIRKEEE--QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
MD +MPVM+G + TR IR E + +VH+PIIALTAHA+A +K++ GMD ++TKP
Sbjct: 718 FMDIQMPVMSGIDTTRAIRSLESTLEGEVHLPIIALTAHALADEKNKLLKVGMDDYVTKP 777
Query: 1080 LQKDKLLDVV 1089
+Q D+L+ ++
Sbjct: 778 IQIDQLIHIL 787
>gi|288941879|ref|YP_003444119.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
gi|288897251|gb|ADC63087.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
Length = 1253
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 152/305 (49%), Gaps = 54/305 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE---DANPGTDLAENLGLIRT 438
A E AER S K+ LA SH++R + A+IGL +L E DA + LG IR
Sbjct: 516 RAQEAAERASRAKSQFLANMSHEIRTPMNAVIGLSDLLLETPLDAKQ----RDYLGKIRE 571
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
S+ LLGI+N +++ SKIEAGK++L + F+L LL+++ ++ + + ++++ D
Sbjct: 572 SSRLLLGIINDILDYSKIEAGKLDLSLQPFSLDDLLDQMRTLFGNEADARDIELIFDLA- 630
Query: 499 GSVLGSCH-VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ S H V GD ++L+Q+L NL+SN++KFT +G + + S +Q
Sbjct: 631 ---VSSLHRVEGDALRLRQVLINLLSNAVKFTEQGQVVL-------SIRQ---------- 670
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
LDA + R FEV DTG GI ++Q +F+ F Q
Sbjct: 671 -----------------LDAGTASAR------LRFEVRDTGIGIAPEQQTRLFKPFSQAD 707
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTD 677
+ G GLGL I Q +V M G + + + PG G F F++ L ++ RP +
Sbjct: 708 SSTTRRYGGTGLGLVISQKLVEKMGGTLVL-ESTPGA-GSRFYFDLTLPVSSDQTRPSSP 765
Query: 678 EEDPR 682
+ PR
Sbjct: 766 GDVPR 770
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 82/152 (53%), Gaps = 25/152 (16%)
Query: 949 AQSDGKCSEK-PLNG---------KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEA 998
A S+ + +E+ P++G + L+VED+A+ +V +A+L K + + NG+EA
Sbjct: 897 AVSEQRATERRPVSGVRRIPCFSERTLLLVEDNALNREVATAILDKTRIRIILANNGQEA 956
Query: 999 FDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAH 1058
D V + DL ++MD +MPVM+G+EATR IR + +PIIAL+A
Sbjct: 957 VDQVGRTSIDL-----------VLMDLQMPVMDGFEATRRIRARYPE----LPIIALSAA 1001
Query: 1059 AMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
M + AG + H+ KP++ + ++++
Sbjct: 1002 VMDADREQARLAGANDHVAKPIESQTVFEMLE 1033
>gi|308050680|ref|YP_003914246.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799]
gi|307632870|gb|ADN77172.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799]
Length = 1756
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 141/294 (47%), Gaps = 45/294 (15%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A E A+ S KT LA SH++R + AIIG+ +LC + P A+ L I + S+
Sbjct: 1027 QAKEAADAASKAKTDFLANMSHEIRTPMNAIIGMTQLCLQTDLPPRQ-ADYLRKIDSASQ 1085
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LLGI+N V++ SKIEAG++EL +E F L +LLE++ D++ +KGV+++ + V
Sbjct: 1086 SLLGIINDVLDYSKIEAGRLELEQEPFALDELLEQLSDLFAVRAKEKGVELLF-AVEPEV 1144
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+ GD ++L QIL NL+SN++KFT G +
Sbjct: 1145 --PARLNGDMLRLGQILINLLSNAIKFTDHGEVV-------------------------- 1176
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
L R +G P + F V DTG G+ ++Q +F+ F Q +
Sbjct: 1177 --LAIRQLDGAP-----------PGQTRLTFSVRDTGIGMSPEQQARLFQSFSQADSSTT 1223
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPD 675
G GLGL I Q +V LM G+I + G F F++ L + +P+
Sbjct: 1224 RKYGGTGLGLAISQRLVSLMGGQIQV--NSAAGAGSTFHFSIELALPEQPPQPE 1275
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 76/127 (59%), Gaps = 14/127 (11%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K+ L+VED+ + +V L +LG + V +G A + + K G+ YD ++
Sbjct: 1427 KRVLLVEDNQVNQEVACEFLRQLGLRVSVAEHGGVALEKL--------KSGE---YDLVL 1475
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MDC+MPVM+G++ATR IR +Q ++ +P++A+TA+AM K + AGM+ H+ KP+
Sbjct: 1476 MDCQMPVMDGYQATRAIR---DQLNMTLPVVAMTANAMQEDREKCLAAGMNEHIAKPIDL 1532
Query: 1083 DKLLDVV 1089
+L V+
Sbjct: 1533 SQLHRVL 1539
>gi|218778728|ref|YP_002430046.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
gi|218760112|gb|ACL02578.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
Length = 1022
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 144/281 (51%), Gaps = 48/281 (17%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLIRTCSKDLLG 445
AE S+ K+ LA+ SH++R L A++G+ EL +E N +L + + I + S L+
Sbjct: 343 AEAASLAKSDFLARMSHEIRTPLNAVVGMAELASNEKMN--QNLKKIIETITSESNALVA 400
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N +++ SKIEA KMEL E F+L LLE++ D KKG++ +L + +
Sbjct: 401 LVNRILDFSKIEAQKMELEEFPFDLGYLLEDIADSMGLEAYKKGLEFILH-INPEI--PV 457
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
V+GD +++Q+L NL+ N++KFTSEG + V+A ++ ++ ++ II
Sbjct: 458 QVKGDPGRIRQVLTNLIGNAIKFTSEGEVFVKAELETRTDEKAII--------------- 502
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
+F + DTG GIP++K+ IFE F Q ++
Sbjct: 503 -------------------------KFHIQDTGIGIPEEKRGLIFEAFTQADDSTTRKYG 537
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
G GLG I + +V LM GEI + +E G F F V+L
Sbjct: 538 GTGLGTTISKKIVELMGGEIGLESREGC--GSIFWFTVVLA 576
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 21/113 (18%)
Query: 986 GAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQ 1045
G + + NG++A + RK+ +D + MD +MP+M+G+EAT+ IR E +
Sbjct: 768 GYRVALAENGQKAVEA-------FRKK----TFDLVFMDIQMPIMDGYEATKQIRALEAE 816
Query: 1046 ----------YDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDV 1088
PIIA+TAHA G K ++A MD ++TKP+ K +LL++
Sbjct: 817 NAGEGNGDGSKKERCPIIAMTAHAFNGYREKCLEADMDDYITKPISKKELLEI 869
Score = 40.8 bits (94), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 18/172 (10%)
Query: 930 GAEAGASISSHCSS---------LQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSA 980
G E G C S LQQV + E + GKK LV+E++ +V +
Sbjct: 554 GGEIGLESREGCGSIFWFTVVLALQQVK-RVPVISPEYDIVGKKILVIENNLSYREVIQS 612
Query: 981 VLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040
L G + N +EA ++ S + E AL I+MD +P + + ++
Sbjct: 613 YLLSWGGIVDTAPNIEEAIRYLESQSS--QGEKPAL----IVMDLNLPSLIDLDLAGSLK 666
Query: 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
+ IP+I LT G K + G+D +L KP+++D L VV+ +
Sbjct: 667 RSPLMKG--IPLIVLTNVGRMGDGKKCRELGIDGYLAKPVRRDDLCKVVRVV 716
>gi|83950813|ref|ZP_00959546.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens
ISM]
gi|83838712|gb|EAP78008.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens
ISM]
Length = 729
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/336 (30%), Positives = 156/336 (46%), Gaps = 70/336 (20%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL----IR 437
A +AE S K+ LA SH++R + ++G+ +L E TDL E+ L IR
Sbjct: 204 RAKHRAEAASRAKSAFLANMSHEIRTPMNGVMGMADLLRE-----TDLDEDQALYATTIR 258
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
++ LLGI+N V++ SK+EA ++ L + F+L + L E++ + +GVDV LD
Sbjct: 259 NSAEALLGIINDVLDYSKVEADRLSLQLDGFDLERCLHEIILLMQPKARDQGVDVWLDY- 317
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ +RGD +++Q+L NL+ N++KFT EGH+ +R + A R
Sbjct: 318 --DLFLPTRLRGDGGRIRQVLTNLIGNAVKFTPEGHVLIRVV--------GVSAEGRA-- 365
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+ V+DTG GI DK +F EF QV+
Sbjct: 366 -------------------------------EIHVTVEDTGIGIAPDKIGHVFGEFNQVE 394
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTD 677
E EG GLGL I Q ++ LM GEI + + PG+ G F F + L D +
Sbjct: 395 EAQNRRFEGTGLGLAIAQKLIRLMGGEIWV-ESAPGQ-GSVFGFTITL---------DIE 443
Query: 678 EEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMIL 713
E + P+ GL Q A + EG++MIL
Sbjct: 444 EPQGQEPCRLPE-GLRQVVV-----AGRPEGARMIL 473
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L ED+ V ++ L + NG+EA A D I M
Sbjct: 595 RVLAAEDNRTNRLVFEKMVKALAIELRFAENGREAVAGYA-----------AFEPDIIFM 643
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G EA+R IR+ E + H+PI+A+TAHAM G + I AG+D +LTKPL+K
Sbjct: 644 DISMPEMDGKEASRAIRRHE-GHGAHVPIVAMTAHAMQGDEADIRAAGIDHYLTKPLRKP 702
Query: 1084 KLL 1086
+L+
Sbjct: 703 ELI 705
>gi|334120699|ref|ZP_08494777.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333455971|gb|EGK84609.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1052
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 152/293 (51%), Gaps = 43/293 (14%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+A+R + K+ L+ SH++R L AI+G +L D N G D + LG+I +
Sbjct: 560 AKEEADRANRAKSEFLSNMSHELRTPLNAILGFSQLLARDPNLGADQQQYLGIISQSGEH 619
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N++++MSKIE G + L F+L ++L+ +M KKG+ ++ D C +
Sbjct: 620 LLVLINNILQMSKIEVGLVTLNNSTFDLHKMLKNTENMLKLQAGKKGLQLIFD-CRPDL- 677
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAA---VKKKSFKQDIIASNRNVISK 559
++ D KL+Q+L N+V N++KFT+EG +++R +K K++ + I+++ N
Sbjct: 678 -PQYIEADESKLRQVLINVVGNAIKFTAEGGVNLRIKHELLKNKNYPE--ISASDNC--- 731
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
CL FEV DTG GI ++ +++F+ F Q E+
Sbjct: 732 CLL-----------------------------FEVQDTGSGISAEEMDNLFKPFAQT-ES 761
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
QEG GLGL I + V LM G++ + RG FRF+V ++ E E
Sbjct: 762 GKKAQEGSGLGLPISKQFVQLMGGKMTVTSTLG--RGSIFRFDVKVSLPNEME 812
Score = 43.1 bits (100), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I MD MPVM+G+EAT+ I+ + Q V IIALTA A S I+ AG D + KP
Sbjct: 879 IWMDMRMPVMDGYEATKQIKAHLKGQATV---IIALTASAFDEERSLILSAGCDDFVAKP 935
Query: 1080 LQKDKLLD 1087
++ +++
Sbjct: 936 FREQVIVE 943
>gi|218438826|ref|YP_002377155.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
gi|218171554|gb|ACK70287.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
Length = 1285
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 145/293 (49%), Gaps = 49/293 (16%)
Query: 375 AALIKQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENL 433
A L++Q+ A E A+ + K+ LA SH++R L AI+G +L D++ E +
Sbjct: 801 AELLEQLTKAKETADAANKAKSEFLANMSHELRTPLNAILGFTQLLARDSSLSDKQHEYV 860
Query: 434 GLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV 493
G+I + LL +LN V+EMSKIEAG++ L E F+L +LL + +M+ KG+ ++
Sbjct: 861 GIIGRSGEHLLSLLNDVLEMSKIEAGRITLNENHFDLYRLLNTLEEMFQLKAQSKGLQLI 920
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
D C V +++ D KL+QIL NL+ N +KFT G + +R
Sbjct: 921 FD-CHPDV--PQYIKTDESKLRQILINLIGNGIKFTEVGSVILRVK-------------- 963
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
LS L + + +FEV+DTG GI ++ +++F+ F
Sbjct: 964 -------LSLL---------------------STMTIDFEVEDTGLGIAPEELDTLFQPF 995
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
+Q + QEG GLGL I Q V LM G I++ K +G FRF + T
Sbjct: 996 IQTV-SGRKSQEGTGLGLPISQKFVQLMGGNISV--KSNLNKGSMFRFEIPFT 1045
Score = 47.4 bits (111), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVH--IPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
I MD MP+++G++AT+ IR++E IIALTA + + +AG D + K
Sbjct: 1118 IWMDMRMPLIDGYQATKQIREKESMTSTQQRTKIIALTASVLDTQRMTVFNAGCDDFVAK 1177
Query: 1079 PLQKDKLLDVV 1089
P++K+K+ + +
Sbjct: 1178 PVRKEKVFEKI 1188
>gi|197117407|ref|YP_002137834.1| bifunctional sodium solute symporter/sensor histidine kinase response
regulator [Geobacter bemidjiensis Bem]
gi|197086767|gb|ACH38038.1| sodium solute symporter and sensor histidine kinase response
regulator, SSF and PAS domain-containing [Geobacter
bemidjiensis Bem]
gi|406921274|gb|EKD59180.1| hypothetical protein ACD_55C00121G0002 [uncultured bacterium]
Length = 1323
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 141/292 (48%), Gaps = 53/292 (18%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+AE + K+ L+ SH++R L AI+G ++ N + L ++R C +
Sbjct: 854 AKERAEVANQAKSAFLSSMSHELRTPLNAILGYAQILKRQDNLTDAQRQQLEIVRGCGEH 913
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V++M KIEA KMEL E F+L+ LL +V + +K + + +
Sbjct: 914 LLSLINDVLDMGKIEAQKMELAELSFDLSALLGQVFSIAKVKADEKDLGFKYEELNRL-- 971
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
VRGD+ KLKQIL NL+SN++K+T G ++VR
Sbjct: 972 -PRAVRGDQRKLKQILLNLLSNAVKYTHRGCVTVR------------------------- 1005
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
V + + F E+ DTG GIP+DK IFE FVQ+ + G
Sbjct: 1006 ------------------VRYHSSTGVFACEITDTGTGIPRDKLGIIFEPFVQLAD---G 1044
Query: 623 HQ--EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
Q EG GLGL I + +V LM G++ + + EPG G FR + L V E E
Sbjct: 1045 GQIREGTGLGLSITRRLVSLMHGQVTV-ESEPGA-GSTFRVELPLPTVTEGE 1094
>gi|94264477|ref|ZP_01288265.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
MLMS-1]
gi|93455108|gb|EAT05332.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
MLMS-1]
Length = 876
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 143/302 (47%), Gaps = 35/302 (11%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A + R S K+ L+ SH++R L IIG L E + + L +I+T
Sbjct: 447 LTANAELNRVSAYKSRFLSAMSHEIRTPLQTIIGFSNLALEGGS--QPPRQYLEMIKTAG 504
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV--DVVLDPCD 498
LL ++N +++++KIE+G++EL E F A+ + + ++ Y ++G+ D +DP
Sbjct: 505 DTLLELINGILDLAKIESGRLELAERCFKPAEFIGKTLEPYAFAARQRGLAFDTSIDP-- 562
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHI--SVRAAVKKKSFKQDIIASNRNV 556
+V G V GD +L Q+L NLV N++KFT EG I SVR A + + A V
Sbjct: 563 -AVPG--EVVGDPARLTQVLVNLVGNALKFTEEGEIAVSVRPAADDADRRPTVGAGRAEV 619
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
S DA + F V D+G GI ++Q IF F Q
Sbjct: 620 APPAAS-------------DATSGL--------LHFTVRDSGSGIAAEQQGRIFNRFAQG 658
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT 676
+ A H G GLGL I S+V LM GEI + + PGE G F F + RER
Sbjct: 659 EGAASPHG-GHGLGLAIAASLVELMGGEIWL-ESRPGE-GSSFHFTIAYRLPPPRERATA 715
Query: 677 DE 678
+E
Sbjct: 716 EE 717
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LV ED+ ++ + +L G + NG+EA +I D P I+MD
Sbjct: 757 ILVAEDNEFNRQLLTDLLQNHGHRVLAANNGREA----VEIYRDK-------PCQLILMD 805
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
MP ++G EATR IR+ E Q IPII +TA K + AGMD TKP+
Sbjct: 806 MMMPELDGPEATRAIRRLEAQGGSRIPIIGVTAGTQPEEIQKCLAAGMDCCFTKPVDIKT 865
Query: 1085 LL 1086
+L
Sbjct: 866 ML 867
>gi|392542571|ref|ZP_10289708.1| sensor protein [Pseudoalteromonas piscicida JCM 20779]
Length = 1103
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 143/284 (50%), Gaps = 47/284 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A + AE+ + K+ LA SH++R + +IG++ L ++ T L + L +K
Sbjct: 551 QAKQAAEQGAQAKSEFLASMSHEIRTPMNGVIGMLSLLEDEHLTQTQL-HKVSLAMGSAK 609
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N +++ SKIEAGK+EL +F++ LL E+V+ KKG++++LD
Sbjct: 610 SLLNLINDILDFSKIEAGKLELESLDFDVRALLGELVESVALQAQKKGLELILDVTQ--- 666
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
L V+GD +++QI+ NL+SN++KFT +G I +RA
Sbjct: 667 LEKPLVQGDPSRIRQIITNLISNAIKFTEQGEIIIRA----------------------- 703
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
F ++D N L+F V+DTG GIP+DK + +F +F QV +
Sbjct: 704 ---------WFSEVD---------NKLRFHCSVEDTGIGIPEDKADRLFAKFSQVDASTT 745
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL IV+ + LM G+I ++ + G F F V L
Sbjct: 746 RKYGGTGLGLAIVRQLCELMDGDITVSSRFG--HGSQFEFFVTL 787
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 15/158 (9%)
Query: 931 AEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLG-AKF 989
A A ++SH L + A +++ KP + L+VED+ + V ++L KLG
Sbjct: 935 ANAKPLVTSHYLKLVRKATETEFTWP-KPC---RILLVEDNKVNQVVALSMLKKLGITHI 990
Query: 990 EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE--EQYD 1047
EV NG A + L+ ++ I+MDC+MP M+G+ T LIR E Y
Sbjct: 991 EVAENGLLAIEL-------LKSHQDECQFELILMDCQMPEMDGYRTTELIRDGAAGESYQ 1043
Query: 1048 VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+ I+A+TA+AM+G K ++AGM+ +LTKP+ ++ L
Sbjct: 1044 -GVKILAMTANAMSGDREKCLNAGMNDYLTKPISEEPL 1080
>gi|416394702|ref|ZP_11686249.1| two-component hybrid sensor and regulator [Crocosphaera watsonii WH
0003]
gi|357263210|gb|EHJ12245.1| two-component hybrid sensor and regulator [Crocosphaera watsonii WH
0003]
Length = 723
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 161/299 (53%), Gaps = 36/299 (12%)
Query: 369 REMFLCAALIKQMNATEQAERKSMN----KTFALAKASHDVRASLAAIIGLVELCHEDAN 424
R++ L AAL E+A +K+ K LA SH++R L AI+G ++ +
Sbjct: 222 RDILLLAALEFSHTVMEEAVKKAEAANRIKGEFLANMSHELRTPLNAILGFAQIMRRSSK 281
Query: 425 PGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHV 484
+ ENL +I + LL ++N V+++SKIEAG+ + + E + +LL+++ DM+
Sbjct: 282 LDAEQQENLSIITGSGEHLLNLINQVLDLSKIEAGRTIINKTELDFYRLLDDLEDMFQFK 341
Query: 485 GIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
++ + ++ + ++R D+VKL+Q+L NL++N++KFT EG +S+R V+ +S
Sbjct: 342 AEEQKLRLLFERSPNV---PQYIRTDQVKLRQVLINLINNALKFTEEGGVSLR--VRGES 396
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
+ + +N KE + L ++ E++DTG+GI ++
Sbjct: 397 L--NFMETN-------------DTKETENKLSTKKTI---------IIEIEDTGQGISQE 432
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ + +FE FVQ K +QEG GLGL I + ++LM G+IA+ + E G RG +FN+
Sbjct: 433 ELDRLFEPFVQSKGVK-NNQEGTGLGLTISRKFINLMGGDIAM-NSEVG-RGTIIKFNI 488
Score = 48.5 bits (114), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D ++ +L LG + NGKEA + L I M
Sbjct: 519 RILVVDDRYSNRELVVKLLTPLGFEIRTASNGKEAIQVWQQWEPHL-----------IWM 567
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP+M+G+EAT++I+ + IIALTA + ++ G D + KP ++
Sbjct: 568 DMRMPIMDGYEATKVIKTTMKGQAT--AIIALTASVFEEEKAVVLSTGCDSFIRKPFREA 625
Query: 1084 KLLDVVKSIDETMEKQ 1099
++ D MEKQ
Sbjct: 626 EIFDA-------MEKQ 634
>gi|298530453|ref|ZP_07017855.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509827|gb|EFI33731.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1112
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 148/292 (50%), Gaps = 50/292 (17%)
Query: 376 ALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVE-LCHEDANPGT-DLAENL 433
A I+ A EQAE+ SM K+ LA SH++R ++ IIG ++ L E A+ DL +
Sbjct: 564 AEIELYQAKEQAEKASMAKSEFLANMSHEIRTPISGIIGALDMLASESADQSRKDLVD-- 621
Query: 434 GLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV 493
+ ++ L I+N ++++SK+EAGK++LV E+F+L L+ V+ +Y +G+ +
Sbjct: 622 -MTLESARSLEQIINDILDLSKVEAGKLDLVHEDFSLRSLVRRVLGLYSIQARNQGIALK 680
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
+D D + +VRGD +L+Q+L NLVSN++KFT GH+ +R
Sbjct: 681 VD-ADSRL--PEYVRGDAHRLEQVLRNLVSNAVKFTQAGHVLIRVKAM------------ 725
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
D+D + EF+V+D+G+GI D S+F+ F
Sbjct: 726 --------------------DIDEHKAT--------VEFQVEDSGEGISGDFLPSLFDSF 757
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
Q T +G GLGL I Q +V +M GEI + PG RG F F + L
Sbjct: 758 TQADITYGKKHQGSGLGLAISQRLVQMMGGEIQVQST-PG-RGSVFSFALTL 807
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 32/148 (21%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LVVED + + +L G + + NG+EA + G+ +D I+MD
Sbjct: 836 LVVEDVELNREYMGYLLESRGHRVQFASNGEEAVSAF--------EPGR---FDLILMDI 884
Query: 1026 EMPVMNGWEATRLIRKEEEQY---------------DV------HIPIIALTAHAMAGVA 1064
+MP ++G EATR IR E + DV +PIIALTA+AM G
Sbjct: 885 QMPGIDGLEATRRIRSMEGERLGERGMEHGARGGTPDVGSRDSARVPIIALTAYAMPGDR 944
Query: 1065 SKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
K ++ GMD +++KP+ KLL + +
Sbjct: 945 EKFLEEGMDGYVSKPVDPSKLLQEISGL 972
>gi|162461250|ref|NP_001104867.1| histidine kinase3 [Zea mays]
gi|38347688|dbj|BAD01585.1| histidine kinase 3 [Zea mays]
Length = 1201
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 151/298 (50%), Gaps = 28/298 (9%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
QAE + K+ LA SH++R + ++G++++ D T + + + K L+
Sbjct: 589 QAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM-DTELDTTQQDFVVTAQESGKVLIN 647
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N V++++KIE+G++EL F++ +L+ V+ ++Y KG+++ +VL S
Sbjct: 648 LINEVLDLAKIESGRIELEAVPFDVRDILDNVISLFYEKSQAKGIEL-------AVLVSD 700
Query: 506 HVR----GDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ-----DIIASNRNV 556
V GD + +QI+ NLV NSMKFT +GHI V+ + K+ ++ D+ A NR +
Sbjct: 701 QVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFVQVHLVKELSRKGNNFCDVSAHNREI 760
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVE-----RNPN----LLQFEFEVDDTGKGIPKDKQN 607
+ + + + G + D+ S+E +N N ++ V+DTG GI KD Q
Sbjct: 761 LYDSDNSMLWNTLSGLEVADSWRSLENFTMFKNSNGETDTIRLAVRVEDTGIGITKDAQM 820
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
IF F+Q + G G+GL I + +V LM GEI K G F F +
Sbjct: 821 RIFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSG--VGSTFSFTAIF 876
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 28/156 (17%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK+ LVV+D+A+ KV + L K G+ +G +A D + +D
Sbjct: 1054 LTGKQILVVDDNAVNRKVAAGSLKKYGSTVTCVDSGSDAIDML----------KPPHTFD 1103
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHIPIIALTAHAMA 1061
MD +MP M+G+EATRLIR E++ + H+PI+A+TA +
Sbjct: 1104 ACFMDVQMPEMDGFEATRLIRSIEKKINDMIMMGEISANNYGNKAHWHVPILAMTADVIQ 1163
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097
K + GMD +++KP ++ +L V ET E
Sbjct: 1164 ATFEKCMQCGMDGYVSKPFEEQQLYSAVAHFLETDE 1199
>gi|121997120|ref|YP_001001907.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
SL1]
gi|121588525|gb|ABM61105.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
SL1]
Length = 639
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 138/282 (48%), Gaps = 55/282 (19%)
Query: 388 ERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGIL 447
+R ++ LA SHD+R L AI+G +L + T+ ++GL R+ S+ LLG++
Sbjct: 263 QRAEADRNIFLAAISHDLRTPLNAIVGFTDLLAR-SELDTEQRHHVGLCRSASQTLLGLI 321
Query: 448 NSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGSC 505
++V+E+S++EAG++EL +E FNL L + + + +KG+ ++ L+P + G
Sbjct: 322 DTVLELSRLEAGRVELRDERFNLPAFLTTQIGLLQPMAEEKGLSLIWSLEP---DMPG-- 376
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
VRGD V+ Q+L NLVSN++KFT G I V A R+ + +
Sbjct: 377 WVRGDPVRFGQVLYNLVSNALKFTETGSIRVDGA--------------RSTCGRLM---- 418
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
F V DTG GIP+ Q IF+ F Q L +E
Sbjct: 419 --------------------------FTVADTGPGIPEADQGRIFDAFCQ-GGPVLARKE 451
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
G GLGL I Q +V LM G I + PG G FRF V L +
Sbjct: 452 GSGLGLKICQELVRLMGGTIQLVST-PGV-GTTFRFTVTLPS 491
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 13/139 (9%)
Query: 956 SEKPL-NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK 1014
+E P+ G LV EDD + +L + G V NG+EA H + DL
Sbjct: 509 TEAPVGQGLWVLVAEDDPTNALLFQKLLEQAGCHVTVVGNGREAVRHWQRASPDL----- 563
Query: 1015 ALPYDYIMMDCEMPVMNGWEATRLIR-KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
++MD +MP ++G EATR IR +E E + PI +TAHA+ + G D
Sbjct: 564 ------VLMDLQMPEVDGREATRRIRAREAEDWLPRTPIALVTAHALDSFQQECFRIGCD 617
Query: 1074 FHLTKPLQKDKLLDVVKSI 1092
+LTKPL + +L ++ +
Sbjct: 618 AYLTKPLDRAELWQLLARV 636
>gi|428319294|ref|YP_007117176.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
gi|428242974|gb|AFZ08760.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
Length = 1052
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 147/284 (51%), Gaps = 43/284 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+A+R + K+ L+ SH++R L AI+G +L D + G D + LG+I +
Sbjct: 560 AKEEADRANRAKSEFLSNMSHELRTPLNAILGFSQLLARDPDLGADQQQYLGIITQSGEH 619
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N++++MSKIE G + L F+L ++L+ +M KKG+ ++ D C +
Sbjct: 620 LLVLINNILQMSKIEVGLVTLNNSTFDLHKMLKNTENMLKLQAEKKGLQLIFD-CPPDL- 677
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRA---AVKKKSFKQDIIASNRNVISK 559
++ D KL+Q+L N+V+N++KFT+EG +++R +K K++ DI S S
Sbjct: 678 -PQYIETDESKLRQVLINVVANAIKFTAEGGVNLRVKHEGLKTKNYG-DIPPSE----SC 731
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
CL FEV+DTG GI ++ ++F+ F Q E+
Sbjct: 732 CLL-----------------------------FEVEDTGSGISAEEMENLFKPFAQT-ES 761
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
QEG GLGL I + V LM G++ + RG FRF+V
Sbjct: 762 GKKAQEGTGLGLPISKQFVQLMGGKMTVTSTLG--RGSIFRFDV 803
Score = 44.3 bits (103), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I MD MPVM+G+EAT+ I+ + Q V IIALTA A S I+ AG D + KP
Sbjct: 879 IWMDMRMPVMDGYEATKQIKAHLKGQATV---IIALTASAFDEERSVILSAGCDDFVAKP 935
Query: 1080 LQKDKLLD 1087
++ +L+
Sbjct: 936 FREQVILE 943
>gi|413934338|gb|AFW68889.1| putative histidine kinase family protein [Zea mays]
Length = 1201
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 151/298 (50%), Gaps = 28/298 (9%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
QAE + K+ LA SH++R + ++G++++ D T + + + K L+
Sbjct: 589 QAEAADIAKSQFLATVSHEIRTPMNGVLGMLQMLM-DTELDTTQQDFVVTAQESGKVLIN 647
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N V++++KIE+G++EL F++ +L+ V+ ++Y KG+++ +VL S
Sbjct: 648 LINEVLDLAKIESGRIELEAVPFDVRDILDNVISLFYDKSQAKGIEL-------AVLVSD 700
Query: 506 HVR----GDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ-----DIIASNRNV 556
V GD + +QI+ NLV NSMKFT +GHI V+ + K+ ++ D+ A NR +
Sbjct: 701 QVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFVQVHLVKELNRKGNNFCDVSAHNREI 760
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVE-----RNPN----LLQFEFEVDDTGKGIPKDKQN 607
+ + + + G + D+ S+E +N N ++ V+DTG GI KD Q
Sbjct: 761 LYDSDNSMLWNTLSGLEVADSWRSLENFTMFKNSNGETDTIRLAVRVEDTGIGITKDAQM 820
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
IF F+Q + G G+GL I + +V LM GEI K G F F +
Sbjct: 821 RIFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSG--VGSTFSFTAIF 876
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 28/158 (17%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK+ LVV+D+A+ KV + L K G+K +G +A D + +D
Sbjct: 1054 LTGKQILVVDDNAVNRKVAAGSLKKYGSKVTCVDSGSDAIDML----------KPPHTFD 1103
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHIPIIALTAHAMA 1061
MD +MP M+G+EATRLIR E++ + H+PI+A+TA +
Sbjct: 1104 ACFMDVQMPEMDGFEATRLIRSIEKKINDMIMMGEISANNYGNKAHWHVPILAMTADVIQ 1163
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETMEKQ 1099
K + GMD +++KP ++ +L V ET E +
Sbjct: 1164 ATFEKCMQCGMDGYVSKPFEEQQLYFAVAHFLETDETE 1201
>gi|158334723|ref|YP_001515895.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
gi|158304964|gb|ABW26581.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
Length = 883
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 149/295 (50%), Gaps = 35/295 (11%)
Query: 375 AALIKQMNAT-EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENL 433
A L+KQ+ + ++AE + K+ LA SH++R L AI+G +L D N + + L
Sbjct: 365 AELLKQVRESRDKAEAANKAKSAFLANMSHELRTPLNAILGFSQLLARDENLTLEQKQTL 424
Query: 434 GLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV 493
I LL ++N V++MSKIEAGK+ L + +L LL+ + +M+ KG +V
Sbjct: 425 NTINRSGSHLLSLINDVLDMSKIEAGKIALNPKNCDLLPLLDSLQEMFALKAKSKG--LV 482
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
L+ S L S H+R D +L+Q+L NL++N++KFT G +++R
Sbjct: 483 LNIQKSSQLPS-HIRVDESRLRQVLINLLTNALKFTDVGSVTLR---------------- 525
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
V ++ L F N+E P+ L F+V+DTG GI ++ + IFE F
Sbjct: 526 --VFTQPLPAPFSLNQETL-----------QPS-LSLCFDVEDTGIGIANNELDHIFEAF 571
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
+Q H EG GLGL I +HLM+G+I I + V + VL+ V
Sbjct: 572 IQTSSGRRSH-EGTGLGLAICHHFIHLMEGDIQIQSQLGQGTTVSVQIPVLIPEV 625
Score = 44.7 bits (104), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED+ ++ ++ +LG + + NG+ A + C + I M
Sbjct: 647 RMLIVEDNPENRQILKRLMTELGFEVQTVDNGQAAVE--C---------WQTWRPHMIWM 695
Query: 1024 DCEMPVMNGWEATRLIRKEEEQ--------------YDVHIP----IIALTAHAMAGVAS 1065
D ++P++NG+EAT+ IR E Q +P IIA++A +
Sbjct: 696 DWQLPILNGYEATKAIRSLEAQDQDAGDLASQNAVEITDRLPERTIIIAVSASVFEDTQA 755
Query: 1066 KIVDAGMDFHLTKPLQKDKLLDVV 1089
+ D G D L KP Q L +++
Sbjct: 756 ECEDVGCDDFLCKPYQPSMLYELL 779
>gi|402758666|ref|ZP_10860922.1| barA [Acinetobacter sp. NCTC 7422]
Length = 936
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 141/308 (45%), Gaps = 50/308 (16%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + +K+ LA SH++R L +I G + L N + L IR
Sbjct: 273 ITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 332
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K +++
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ HV GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 393 ENI---PKHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEDDE------------I 437
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 438 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 469
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F TA + E
Sbjct: 470 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWF----TASFKVEEQ 525
Query: 675 DTDEEDPR 682
D E PR
Sbjct: 526 DEFVEHPR 533
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 12/179 (6%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKF--LVVEDDA 972
Q +PN LN+ + A S +Q + Q + + NG+ L V+D
Sbjct: 616 QMSLEPNMLNE---YRARPLYQPLSRRELVQLLGNQPIFEQESEDFNGQGLHVLAVDDHL 672
Query: 973 IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG 1032
L V A+LG+L +G++A D + + R E K+ P+D + MD +MPVM+G
Sbjct: 673 PNLIVLEALLGELNVTTTKALSGQKAIDIIQE-----RIEQKSPPFDLVFMDIQMPVMSG 727
Query: 1033 WEATRLIRKEEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ TR IR E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 728 IDTTRAIRSLESTLDNGMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|300865287|ref|ZP_07110101.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300336760|emb|CBN55251.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 1581
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 136/265 (51%), Gaps = 12/265 (4%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E AE + K+ LA SH++R L I+G V+L D N D E+LG I+ C +
Sbjct: 1076 AKEVAEAANRAKSEFLANMSHELRTPLNGILGYVQLIKADKNITEDQQESLGNIQQCGEH 1135
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++ ++++SKIEA KMEL EFNL ++ + D++ +K + C+
Sbjct: 1136 LLTLIEDILDLSKIEARKMELSPVEFNLPNFVKNIADLFQMRSAQKNIAFT---CEQISS 1192
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+V GD +L+Q+L NL+ N++KFT+ G ++ R + + + SK
Sbjct: 1193 LPTYVCGDDKRLRQVLINLLGNAVKFTNSGSVTFRVGYVEAGDWGETGDWGLGITSK--- 1249
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
++G + L ++ + + F+V+DTG GI ++K IF F QV +
Sbjct: 1250 -----KEQGTTKTEQLTAINYPLPITKIRFQVEDTGIGIEENKLEEIFLPFHQVSDRVYS 1304
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAI 647
EG GLGL I +V +M GEI++
Sbjct: 1305 I-EGTGLGLSISYKLVKMMGGEISV 1328
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 68/130 (52%), Gaps = 13/130 (10%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
N +K L+V+D+ I + +L ++G + +GK+ + L ++
Sbjct: 1368 NKRKVLIVDDNDINRAMLRRLLSRIGFEIMEAADGKDCLQKAVEFLPNV----------- 1416
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MD MPVM+G+EATR +R+ E +V ++AL+A + + AG D L KP+
Sbjct: 1417 ILMDLLMPVMDGFEATRCLRRIPELKNV--VLLALSASVFHNTQEESLLAGCDQFLRKPV 1474
Query: 1081 QKDKLLDVVK 1090
+ +LL+ ++
Sbjct: 1475 EASQLLERLR 1484
>gi|90023292|ref|YP_529119.1| Signal transduction histidine kinase-like protein [Saccharophagus
degradans 2-40]
gi|89952892|gb|ABD82907.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
2-40]
Length = 765
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 139/291 (47%), Gaps = 45/291 (15%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I+ ++AE + K+ +A SH++R + +IG+VE+ D LG+I
Sbjct: 237 IETRRLVQEAEAANRAKSQFIATMSHEIRTPMNGVIGMVEMLR-DTTLDDSQRHYLGIIE 295
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
L+ I+N +++ SKIEAGKM L +F+L +LLE+ V M+ K+ ++++ C
Sbjct: 296 RSGDSLMNIINDILDYSKIEAGKMSLEHMQFDLEELLEDCVQMFSASTDKRNIELI---C 352
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
S + GD +LKQ+L NL+ N+ KFTSEGHI V A + + AS+
Sbjct: 353 SISPNTPKQLMGDPTRLKQVLVNLIGNAFKFTSEGHIYVEA--------RQVNASDA--- 401
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
DL +H F V+D+G GI ++Q +F+ F Q
Sbjct: 402 ----------------DLPMIH------------FSVEDSGIGIESNQQEKLFDAFCQAD 433
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
+ G GLGL I + + +M GEI + +E G F F+ + T V
Sbjct: 434 GSTTRKFGGTGLGLTICKQLAEMMGGEIGVYSREKA--GSTFWFSAVFTHV 482
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 13/132 (9%)
Query: 955 CSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK 1014
SE PL+ LV ED+ + V +L K + +G +A + V +
Sbjct: 631 VSEGPLH---VLVAEDNPVNRMVIEGLLAKFDIAPKFAEDGLQALNAVTE---------S 678
Query: 1015 ALPYDYIMMDCEMPVMNGWEATRLIRK-EEEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
PYD I+MDCEMP M+G+EATR IR E IIALTAH A ++ D+GM+
Sbjct: 679 PTPYDLIIMDCEMPEMDGFEATRSIRTWESNNNQPATTIIALTAHVEAEHRQRVFDSGMN 738
Query: 1074 FHLTKPLQKDKL 1085
++L+KP+ +KL
Sbjct: 739 YYLSKPVTMEKL 750
>gi|359459692|ref|ZP_09248255.1| two-component hybrid sensor and regulator histidine kinase, partial
[Acaryochloris sp. CCMEE 5410]
Length = 1581
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 138/292 (47%), Gaps = 39/292 (13%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A ++AE+ + K+ LA SH++R L AI+G +L D + E L +I +
Sbjct: 1096 TAQKKAEQANRAKSIFLANMSHELRTPLNAILGFSQLISRDPSTPNYQQEQLEIINRSGE 1155
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N V+ MSKIEAG+ L + +L LL+ V +M KKG+ ++ D S
Sbjct: 1156 HLLALINDVLTMSKIEAGRSSLRSQIVDLPLLLDTVENMLGLKAEKKGLKLIFDRGPNS- 1214
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
++R D KL+Q+L NL+SN++KFT+ GH+ + CL
Sbjct: 1215 --PHYIRTDPGKLRQVLMNLLSNAIKFTTSGHVQL-----------------------CL 1249
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
EG P LL F V DTG GI ++ +FE F Q ET
Sbjct: 1250 ESNTLDTPEG----------SGVPPLLDIRFTVSDTGSGIAPEELKLLFEPFAQT-ETGR 1298
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
QEG GLGL I + V +M G + +G F FN+++ V ++++
Sbjct: 1299 QSQEGTGLGLAISRQFVQIMGGNLTAHSIH--NQGTTFTFNIVVETVLQQKQ 1348
Score = 41.2 bits (95), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED+ ++ +L +G + NG+ A +C+ P+ + M
Sbjct: 1366 RILVVEDNVDSRELLVTLLETVGFTVKAAENGEVAIA-LCQSWQ---------PH-LVWM 1414
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +PV++G ATRLI+ Q + +IALTA+A + AG D + KP ++
Sbjct: 1415 DLRLPVLDGLSATRLIK----QLETPPVVIALTANAFDEDRDLALQAGCDDFVHKPYREA 1470
Query: 1084 KLLD 1087
+ +
Sbjct: 1471 SIFE 1474
>gi|410465120|ref|ZP_11318485.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409981762|gb|EKO38286.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 919
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 140/291 (48%), Gaps = 51/291 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A QAE S K+ LA SH++R L+ IIGL ++ NP ++ ENL LI S+
Sbjct: 416 TARRQAEAASQAKSGFLANMSHEIRTPLSGIIGLTQMTLTQ-NPRPEIRENLELILDSSR 474
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG--VDVVLDPCDG 499
LLGI+N +++ SKIEAGKME V +F+ L+ + + +KG + V +DP
Sbjct: 475 SLLGIVNDILDFSKIEAGKMEFVPVDFDPRDTLDRTMKSFQFSARQKGLTLGVRIDP--- 531
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
V H GD ++ Q++ NLV N++KFT +G + V ++ +
Sbjct: 532 QVPAMVH--GDPDRVMQVVRNLVGNALKFTDQGEVEVTLSLARPG--------------- 574
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
+P L+ V DTG GIP+D+ + +F+ F Q++ T
Sbjct: 575 ------------------------DPMLVS--CSVRDTGIGIPEDRLHELFQVFSQLEST 608
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
G GLGL I + +V +M G I + + PG+ G F F V L CE
Sbjct: 609 RAKRYGGTGLGLAISRRLVEMMGGAIDV-ESVPGQ-GSTFTFTVSLRPACE 657
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 76/146 (52%), Gaps = 18/146 (12%)
Query: 948 AAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILS 1007
AAQ+ G G + L+ ED+ + L + G + + +G +A + +C+
Sbjct: 668 AAQAGG------FAGLRVLLAEDNQVNRLFLKHFLAEAGCQVRLAGSGLQALELLCQ--- 718
Query: 1008 DLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASK 1066
P D ++MD +MP M+G EATR IR+ E +P++ALTA++M G +
Sbjct: 719 --------EPADLVLMDIQMPEMDGAEATRRIREGEAGEAARGMPVVALTAYSMKGDRER 770
Query: 1067 IVDAGMDFHLTKPLQKDKLLDVVKSI 1092
+ G+D +++KP+ D+L V++ +
Sbjct: 771 FLSVGLDDYVSKPVDVDELFMVMRRV 796
>gi|428204111|ref|YP_007082700.1| PAS domain-containing protein [Pleurocapsa sp. PCC 7327]
gi|427981543|gb|AFY79143.1| PAS domain S-box [Pleurocapsa sp. PCC 7327]
Length = 896
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 146/287 (50%), Gaps = 43/287 (14%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
AE + K+ LA SH++R L ++G +L D T + LG I + LL +
Sbjct: 429 AESANRTKSQFLANMSHELRTPLNVVLGFTQLMARDRLLSTQQQDYLGTITRSGEHLLEL 488
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH 506
+N V+EMSKIEAG+ L E F+L L++ + +M+ I G+ ++++ +
Sbjct: 489 INDVLEMSKIEAGQTRLNETNFDLYYLIDTLEEMWRPKAISGGIQLIVERQPDI---PQY 545
Query: 507 VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFF 566
V+ D KL+Q+L NL+SN++KFT +G +++R ++ +++ S++ ++
Sbjct: 546 VQTDESKLRQVLMNLLSNAIKFTQKGSVTLRVSLVEQA------TSDKGQVT-------- 591
Query: 567 RNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEG 626
+FEV+DTG GI ++ ++F FVQ ET Q+G
Sbjct: 592 -----------------------IQFEVEDTGSGIAPEELTTLFNAFVQT-ETGRRSQQG 627
Query: 627 LGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
GLGL I + V LM G+I + + + G +G F+FN+ + + ER
Sbjct: 628 TGLGLAISREFVQLMGGDITL-ETQVG-KGTKFQFNIPIASADAIER 672
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED ++ +L LG + + NG+EA + +A I M
Sbjct: 692 RLLLVEDRWENRQLLLKMLEPLGFEVKEASNGQEAI-----------AQWEAFEPHLIWM 740
Query: 1024 DCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MPVM+G EAT+ I+ + Q V IIALTA + AG D + KP ++
Sbjct: 741 DLRMPVMDGHEATKQIKSHLKGQATV---IIALTASVFEEERVVALSAGCDDFVRKPFRE 797
Query: 1083 DKLLD 1087
+++ +
Sbjct: 798 EEIFE 802
>gi|337751508|ref|YP_004645670.1| histidine kinase [Paenibacillus mucilaginosus KNP414]
gi|379724472|ref|YP_005316603.1| histidine kinase [Paenibacillus mucilaginosus 3016]
gi|336302697|gb|AEI45800.1| histidine kinase [Paenibacillus mucilaginosus KNP414]
gi|378573144|gb|AFC33454.1| histidine kinase [Paenibacillus mucilaginosus 3016]
Length = 398
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 142/291 (48%), Gaps = 46/291 (15%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A QAE+ +M K+ LA SH++R L +I + +L E+ + + E IR
Sbjct: 149 RAKVQAEQAAMAKSQFLAVMSHEIRTPLNGVIAMADLL-EETDLNEEQREYTETIRRSGA 207
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL I+N ++++SKIE+GKMEL EE NL L E ++M++ K +++ D D +V
Sbjct: 208 ALLYIINDILDLSKIESGKMELKEEAMNLRICLMETIEMFHAESRAKSLEMTYD-IDPNV 266
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
C + GD +L+QIL NL+ N++KFT +G + V S C
Sbjct: 267 -PEC-ILGDESRLRQILINLIGNAVKFTDQGGVHV---------------------SVC- 302
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
ER LQ E V DTG GIP++K++ +F+ F QV +
Sbjct: 303 ------------------EREREGQRLQLELRVADTGIGIPEEKRSLLFQPFSQVDSSMT 344
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
G GLGL I +++VHLM G IA+ + +G F F + + E E
Sbjct: 345 RRYGGTGLGLAICRNLVHLMGGTIALGSSD--RQGAEFIFTISVRTCEEHE 393
>gi|442609712|ref|ZP_21024446.1| putative two-component hybrid sensor and regulator
[Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441748728|emb|CCQ10508.1| putative two-component hybrid sensor and regulator
[Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 1267
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 145/301 (48%), Gaps = 56/301 (18%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
+ E AE+ S K+ LA SH++R + ++G++ L D + + L L T +++
Sbjct: 734 SQEIAEKASKAKSEFLANMSHEIRTPMNGVLGMLNLLR-DTKLNDEQSHKLRLATTSAEN 792
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ILN +++ SK++AGK+EL +FN A+LL E+ + +K ++++LD D L
Sbjct: 793 LLTILNDILDFSKVDAGKLELEFIDFNPARLLGELAETMALKTSEKQLELILDLRD---L 849
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
V+GD +L+QIL NL+ N++KFT +G + VRA +K++
Sbjct: 850 PLQFVKGDPSRLRQILNNLIGNAIKFTQQGEVIVRACMKQED------------------ 891
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+G+ +F V DTG GI K QN +F F Q +
Sbjct: 892 -------KGW----------------RFTCSVSDTGIGISKSAQNRLFSAFTQADASTTR 928
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPR 682
H G GLGL I + + LM G+I++ KE G F FN+ D+ E P
Sbjct: 929 HFGGTGLGLAICKQLCQLMNGDISLESKE--NEGSTFHFNLFF---------DSSEHQPI 977
Query: 683 T 683
T
Sbjct: 978 T 978
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 76/137 (55%), Gaps = 19/137 (13%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP-YDYIM 1022
+ L+VED+ + V S +LG++ +V NG A + + ++ P YD ++
Sbjct: 1143 RILLVEDNMVNQIVASKMLGQMSLTCDVANNGALALEAL----------KQSTPSYDLVL 1192
Query: 1023 MDCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MDC+MP M+G+EAT IR + + + IIA+TA+AM + ++ GM+ +++KP+
Sbjct: 1193 MDCQMPEMDGFEATTAIRAGIAGEQNKAVTIIAMTANAMHSDKLRCLEVGMNDYVSKPIN 1252
Query: 1082 KDKLLDVVKSIDETMEK 1098
++++ T+EK
Sbjct: 1253 -------LQTLRNTLEK 1262
Score = 41.2 bits (95), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LVV+D+ +V L G + +G++A L L + ++ ++D
Sbjct: 990 LVVDDNQTNREVICGQLTNWGIESVAVDSGRQA-------LETLNEYQNKRSFNLAILDM 1042
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP M+G + R IR E+ ++D + ++ +T+ G + + D G + + KP+ + L
Sbjct: 1043 QMPSMDGEQLGRAIR-EQARFD-SLKLVMMTSIGQLGESHRFADIGFNAYFPKPVTAEDL 1100
Query: 1086 LDVVKSIDE 1094
+ + + E
Sbjct: 1101 FNALSLLSE 1109
>gi|117925512|ref|YP_866129.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117609268|gb|ABK44723.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 1120
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 148/304 (48%), Gaps = 55/304 (18%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA-NPGTDLAENLGLIRTC 439
+ A E AE + K+ LA SHD+R + A++G+VEL E + +P + + L +IR
Sbjct: 722 LQAKELAESANRAKSDFLATMSHDIRTPMNAVLGMVELLGESSLDP--EQSHYLKIIRRA 779
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
LL ++N ++++SKIEAG+++L ++F LA+ +E V+D+ H +KG+ +
Sbjct: 780 GSTLLSLINDILDLSKIEAGQLKLELDDFTLAETVEHVMDILRHKASEKGLQL---QTHL 836
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
+ VRGD +L+QIL NL+ N++KFT +G +S+
Sbjct: 837 HIPPQQRVRGDAQRLRQILLNLLGNAVKFTQQGSVSL----------------------- 873
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
++++ P+ Q+ F+V DTG GI +Q IFE FVQ +
Sbjct: 874 --------------------TLQQQPD-GQYSFQVADTGPGIAPHRQKIIFEPFVQEESG 912
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEE 679
H G GLGL I +V M+G + + K G F F + L E P DE
Sbjct: 913 THRHFGGSGLGLSICHKLVTAMRGTLWL--KSQLGHGSIFYFTLPLATAME---PAPDEV 967
Query: 680 DPRT 683
P++
Sbjct: 968 SPQS 971
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 76/131 (58%), Gaps = 12/131 (9%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L K+ LVV+D + A L + ++ +G++A ++ + R +D
Sbjct: 982 LVNKRLLVVDDAEDNRNLIQAFLKSCQMQIQMAEDGEQA----VRLCQEQR-------FD 1030
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
I+MD +MP+MNG EATRLIR+ E+ Q+ PIIAL+AHAM V + + AG D HL+K
Sbjct: 1031 LILMDIQMPIMNGLEATRLIRQHEQMQHKSRTPIIALSAHAMLDVNNDALAAGCDLHLSK 1090
Query: 1079 PLQKDKLLDVV 1089
P+ K +LL+ +
Sbjct: 1091 PIAKKRLLEAL 1101
>gi|386346558|ref|YP_006044807.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
6578]
gi|339411525|gb|AEJ61090.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
6578]
Length = 785
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 146/290 (50%), Gaps = 46/290 (15%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
E+A R +K+ LA SH++R L I+G+ EL ED + + + IR + LL
Sbjct: 131 EEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELL-EDTRLDEEQRDYVQQIRFSGEALL 189
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGS 504
++N +++ SKIEAGK+ + +F+L +++E+ V M KK ++VV+D +
Sbjct: 190 ALINDILDYSKIEAGKLPMEIIDFDLYEVVEQAVGMVSLQAHKKHLEVVVDIGEEV---P 246
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
V+GD ++++QIL NL +N++KFT +GH+ R +
Sbjct: 247 RRVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQL------------------------ 282
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
V++ + F V+DTG GIP++K++ +F F Q+ E+
Sbjct: 283 ----------------VQQRKGVAWVAFTVEDTGIGIPENKKHRLFRVFSQIDESTTRRF 326
Query: 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
G GLGL I +S+V +MKGEI + +E GE G F F + L V E P
Sbjct: 327 GGTGLGLAISKSLVEMMKGEIGVRSRE-GE-GSSFWFLLPLPIVESYEPP 374
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 15/125 (12%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LV ED + ++ +L +LG + E+ NGKEA + +G AL D I MD
Sbjct: 533 LVAEDHIVNQELFFTILSRLGYRVELAGNGKEAVE-----------KGLALKPDLIFMDV 581
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP MNG++A R++R ++ P+IA+TA A + + AGM L KP +K L
Sbjct: 582 QMPEMNGYDAARVLR----EHGYEGPVIAVTASAFREDRERALAAGMSDFLPKPFKKKDL 637
Query: 1086 LDVVK 1090
L V++
Sbjct: 638 LPVLQ 642
>gi|384086437|ref|ZP_09997612.1| multi-sensor hybrid histidine kinase [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 838
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 165/333 (49%), Gaps = 63/333 (18%)
Query: 349 FIAGVISLGLFIILIAKAAKREMFLCAALIKQMN-ATEQAERKSMNKTFALAKASHDVRA 407
+A +I G+ + ++K LI ++N A E+A + S+ K+ LAK SH++R
Sbjct: 152 LVATLIIFGVLFLYMSK-----------LISRLNGAIEEARKASLIKSQFLAKMSHELRT 200
Query: 408 SLAAIIGLVELCHEDANP-GTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEE 466
L ++G+ EL E P + E GLI+ S+ LL ++ +++++SKIEAGK++L
Sbjct: 201 PLNGVMGMSELLRE--TPLSAEQTEITGLIQNSSRTLLELIENILDISKIEAGKLQLHPI 258
Query: 467 EFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSM 526
+F+L LL++ + KKG+ +V D + + +RGD +++Q+L NL+ N++
Sbjct: 259 DFSLRSLLDQSCSSLLVLAQKKGLYLVWDSPEST---PDLLRGDTRRIRQVLYNLIGNAI 315
Query: 527 KFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPN 586
KFT +G I ++ + L ++E
Sbjct: 316 KFTEQGGIEIK-----------------------VRSLPMTHRE---------------- 336
Query: 587 LLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIA 646
++ FEV DTG G+ + Q +FE F QV HQEG GLG I + +V M G+I
Sbjct: 337 -IRLRFEVIDTGCGLSEAAQEHLFEAFTQVHNARQNHQEGTGLGTTIAKELVEKMGGQIG 395
Query: 647 IADKEPGERGVCFRFNVLLTAVCERERPDTDEE 679
+ + P ++G F F + L E+P+T +E
Sbjct: 396 V-ESVP-DKGSRFWFELPLQPA---EKPETLQE 423
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 936 SISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNG 995
++ ++ SL QS GK G LV ED+ I KV +L + G V +
Sbjct: 557 NMGNNIVSLHDHYQQSQGK------KGLSILVAEDNIINQKVVQGILRQAGHHVRVSSDS 610
Query: 996 KEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIAL 1055
+E D IL++ + P D +++D MP G + + + E + V P+I L
Sbjct: 611 EETLD----ILAE-----SSFPLDLLILDRNMPGKGGLDVLKAYQMMETAHPV--PVIML 659
Query: 1056 TAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
TA A ++AG +LTKP+ LLD + +
Sbjct: 660 TADATPESMQACLEAGASAYLTKPVDARMLLDQIARL 696
>gi|443315562|ref|ZP_21045046.1| PAS domain S-box [Leptolyngbya sp. PCC 6406]
gi|442784836|gb|ELR94692.1| PAS domain S-box [Leptolyngbya sp. PCC 6406]
Length = 1142
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 139/273 (50%), Gaps = 37/273 (13%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L AI+G ++ D + + +L +I ++LL ++N V+EM
Sbjct: 645 KSEFLAHMSHELRTPLNAILGFTQVMGHDQSLSLESQNHLAIINRSGQNLLELINDVLEM 704
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEAGK+ L F+L LL+E+ M Y K + ++ D C +V ++ D K
Sbjct: 705 SKIEAGKVCLNSSSFDLYNLLDELETMLYIKAQAKQLQLIFD-CAPTV--PQYIITDAGK 761
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
L+Q+L NL+ N++KFT G +S+R ++ ++ +Q R ++G
Sbjct: 762 LRQVLLNLLDNAIKFTDVGQVSLRVSISPEADQQ-------------------RGEDG-- 800
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
+L FEV DTG GI ++ NS+F+ F Q + + EG GLGL I
Sbjct: 801 ----------GLLVLPITFEVKDTGSGIAPEELNSLFQSFAQARAGQRAN-EGTGLGLAI 849
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
+ VHLM GEI + +RG F F++ T
Sbjct: 850 SRKFVHLMGGEIQV--NSAVDRGSHFSFDIQAT 880
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 29/141 (20%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED +V ++L LG + RNGKE H+ + + P+ I+M
Sbjct: 907 RLLIVEDQWENSQVLVSLLVPLGFEVREARNGKEGI-HIWR---------QWHPH-LILM 955
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVH--IPI-IALTAHAMAGVASKIV------------ 1068
D MPVM+G EAT++IR E+ H +P AL+++ +GV +KI+
Sbjct: 956 DIRMPVMDGIEATQVIRALEQSSPPHSELPTAAALSSNEDSGVMTKIIALSASVFEETKL 1015
Query: 1069 ---DAGMDFHLTKPLQKDKLL 1086
G D L KP+Q++ LL
Sbjct: 1016 NATAIGCDDFLRKPIQENVLL 1036
>gi|386727213|ref|YP_006193539.1| histidine kinase [Paenibacillus mucilaginosus K02]
gi|384094338|gb|AFH65774.1| histidine kinase [Paenibacillus mucilaginosus K02]
Length = 398
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 142/291 (48%), Gaps = 46/291 (15%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A QAE+ +M K+ LA SH++R L +I + +L E+ + + E IR
Sbjct: 149 RAKVQAEQAAMAKSQFLAVMSHEIRTPLNGVIAMADLL-EETDLNEEQREYTETIRRSGA 207
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL I+N ++++SKIE+GKMEL EE NL L E ++M++ K +++ D D +V
Sbjct: 208 ALLYIINDILDLSKIESGKMELKEEAMNLRICLMETIEMFHAESRAKSLEMTYD-IDPNV 266
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
C + GD +L+QIL NL+ N++KFT +G + V S C
Sbjct: 267 -PEC-ILGDESRLRQILINLIGNAVKFTDQGGVHV---------------------SVC- 302
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
ER LQ E V DTG GIP++K++ +F+ F QV +
Sbjct: 303 ------------------EREREGQRLQLELRVADTGIGIPEEKRSLLFQPFSQVDSSMT 344
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
G GLGL I +++VHLM G IA+ + +G F F + + E E
Sbjct: 345 RRYGGTGLGLAICRNLVHLMGGTIALGSSD--HQGAEFIFTISVRTCEEHE 393
>gi|445496519|ref|ZP_21463374.1| virulence sensor protein BvgS [Janthinobacterium sp. HH01]
gi|444786514|gb|ELX08062.1| virulence sensor protein BvgS [Janthinobacterium sp. HH01]
Length = 858
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 139/296 (46%), Gaps = 45/296 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A QA+ + K+ LA SH++R L ++IG L + N + NL +I +
Sbjct: 388 AVLQAQAANQAKSIFLANMSHELRTPLNSVIGFSRLMADSKNMLPEEKRNLAIIHRSGQH 447
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N ++E+SKIEAG+ L E L +L+EV+DM + GV + LD G
Sbjct: 448 LLTLINDILELSKIEAGRAVLQTEVVGLEDMLQEVMDMVSMRAGQTGVALELDAA-GLPP 506
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
G+ R D KL+Q+L NL+SN++KFT +G +++R + + RN
Sbjct: 507 GA---RVDGTKLRQVLLNLMSNAVKFTVQGKVTLR-----------VRGAARNA------ 546
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+N + EFEV D G GI Q IFE F+Q + G
Sbjct: 547 --------------------QNGGRCELEFEVIDNGPGISAADQARIFEPFIQAE--GPG 584
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDE 678
EG GLGL I + V LM GE+ + + PG G FRF + + D DE
Sbjct: 585 AHEGTGLGLTISREFVQLMGGELTV-ESAPGA-GATFRFAISVQVADGAPESDDDE 638
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
P G++ LV +D+A + +L LG + V +G +A V DL
Sbjct: 645 PQRGRRILVADDNADGCALLENLLQPLGFEVAVVGDGAQALAMVDVWHPDL--------- 695
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
+ MD MP ++G ATR IR ++ LTA A A + + AG D + K
Sbjct: 696 --VFMDWRMPALDGLSATRQIRANAA--GPQPKVVVLTASAFAEEREEALGAGADEFMRK 751
Query: 1079 PLQKDKLLDVVK 1090
P+++D+L V++
Sbjct: 752 PVEQDQLYAVLE 763
>gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1209
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 139/288 (48%), Gaps = 44/288 (15%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLIR 437
K A QA S K+ LA SH++R + AI+G+ EL + + P + E L +I+
Sbjct: 534 KYQEAARQAREASRAKSEFLANMSHEIRTPMNAIMGMTELAGNTELTP--EQKEYLSIIQ 591
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL--- 494
S+ LL +LN +++ SKIEAGK++L +F+L + + V + +KGV++V+
Sbjct: 592 NSSESLLALLNDILDFSKIEAGKLDLEYIDFSLRETVHNAVYSVAMLAHQKGVELVVRVE 651
Query: 495 -DPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
D DG +GD +L+Q+L NLV N++KFT +G + V + A +
Sbjct: 652 PDMEDG-------FKGDPDRLRQVLVNLVGNAIKFTQQGEVQVEVRLAAAEEMLQHAARD 704
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
+SK LQ F V DTG GI DKQ IFE F
Sbjct: 705 EGYLSK----------------------------LQILFRVVDTGSGIAWDKQEGIFEAF 736
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
VQ ++ G GLGL I +V +MKG I + EPG RG F F
Sbjct: 737 VQADGSSRRKYGGTGLGLSISSRLVEMMKGRIWM-QSEPG-RGSTFSF 782
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 32/186 (17%)
Query: 925 KLKSFGAEA------------GASISSHCSSLQQVAAQS-DGKCSE----KPLNGKKFLV 967
KL+++G +A GA + + + Q+ +GK E +PL K L+
Sbjct: 902 KLRTYGVKAYLFKPVKQSKLLGAILDAVSGGMDHEQEQAQEGKGEEIDGLRPL---KILL 958
Query: 968 VEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM 1027
ED+ + + +L + G + +G+EA D + + +D ++MD +M
Sbjct: 959 AEDNEVNQLLAVRILSQEGHQVRGVHDGREAVDALAR-----------ENFDLVLMDVQM 1007
Query: 1028 PVMNGWEATRLIR-KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
PVM+G EATRLIR +E+E+ + P+IA+TAHA+ G K ++AGMD ++ KP++K L
Sbjct: 1008 PVMDGLEATRLIRAREQEEGLLRTPVIAITAHALKGDREKCLEAGMDSYVQKPIRKADLF 1067
Query: 1087 DVVKSI 1092
+K++
Sbjct: 1068 KEIKAV 1073
>gi|336427305|ref|ZP_08607309.1| hypothetical protein HMPREF0994_03315 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336010158|gb|EGN40145.1| hypothetical protein HMPREF0994_03315 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 538
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 147/304 (48%), Gaps = 46/304 (15%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
K +A + AE+ S K+ L+ SH++R + IIG+ E+ + LA+ L I
Sbjct: 148 KMQHALDMAEKASQAKSEFLSSMSHEIRTPMNGIIGMTEIARRSLDNRDKLADCLDKIDL 207
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
S LL ++N +++MS+IE+GK+EL E F + ++L+ V M+ G+++ + D
Sbjct: 208 SSGYLLTLINDILDMSRIESGKVELAHEPFRITEVLDRVYVMFKQKAEDGGIELSVKYED 267
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFT-SEGHISVRAAVKKKSFKQDIIASNRNVI 557
S+ HV GD ++L QIL N+VSN++KFT S G +++ A K AS + +
Sbjct: 268 QSL---EHVTGDELRLSQILVNIVSNALKFTPSGGRVTLEACGK---------ASGTDKV 315
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+ EF + DTG GI ++ Q +FE F Q +
Sbjct: 316 A-------------------------------MEFLITDTGSGISREFQAKLFEPFEQEQ 344
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTD 677
G GLGL I Q+ +M GEI + K PGE G F+ +VLL E +
Sbjct: 345 SVTSRQYSGTGLGLAISQNFSKMMGGEITVESK-PGE-GSRFKVSVLLDQDKESRETGRN 402
Query: 678 EEDP 681
++P
Sbjct: 403 SDNP 406
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 10/147 (6%)
Query: 945 QQVAAQSDGKCSEKP--LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHV 1002
++ SD + P L G + L+ ED+ I ++ + +L GA+ ++ +G+EA +
Sbjct: 397 RETGRNSDNPSKQSPDSLAGSRILLAEDNPINSEIVTFLLESNGAQVDLAMDGREAVEKY 456
Query: 1003 CKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAG 1062
D Y +I+MD +MPV++G EA R IR+ + + II L+A+A
Sbjct: 457 EASSVDY--------YQFILMDIQMPVLDGLEACRRIREMDRPDAAGVHIIGLSANAFRE 508
Query: 1063 VASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ +GMD +LTKP+ KLL ++
Sbjct: 509 DIDRARQSGMDGYLTKPVDMVKLLALI 535
>gi|443313166|ref|ZP_21042778.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
gi|442776571|gb|ELR86852.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
Length = 792
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 152/342 (44%), Gaps = 52/342 (15%)
Query: 343 MLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKAS 402
++LV + G++S G++ + RE + + A E F LA S
Sbjct: 290 IVLVGLVSVGLLSTGVYWLTKQLQISREQLENYSHKLEQKAQEALAANRAKSAF-LANMS 348
Query: 403 HDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKME 462
H++R L+AI+G +L D + ENL +I + LL ++N V+ MSKIEAG +
Sbjct: 349 HELRTPLSAILGFTQLMTRDRTLDSAQLENLAIISRSGEHLLTLINDVLSMSKIEAGSII 408
Query: 463 LVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLV 522
L E FNL LL+ + +M+ KG++++ + ++ D KL Q+L NL+
Sbjct: 409 LDENSFNLNSLLDSLAEMFAIKAEAKGLELIFERSQDL---PNYLHADESKLSQVLINLL 465
Query: 523 SNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVE 582
N++KFT G + +RA+V
Sbjct: 466 GNAIKFTETGRVILRASVI----------------------------------------- 484
Query: 583 RNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMK 642
N L FEV+DTG GI + +F+ FVQ + HQ G GLGL I Q LM
Sbjct: 485 -NNEHLTLHFEVEDTGTGIESHELEKLFKPFVQTQAGQKSHQ-GTGLGLSISQQFACLMS 542
Query: 643 GEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTH 684
GEIA+ K +G F F+V V + ++ + E P+T
Sbjct: 543 GEIAL--KSTPSQGTVFYFDV---PVKKEQKLEETETKPQTR 579
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 15/125 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED ++ +L +G + +NG+ + + +I P+ I M
Sbjct: 591 RILVVEDRDENRQLLVKLLTSIGFEVRAAQNGQVGIN-IWQIWK---------PH-LIWM 639
Query: 1024 DCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MPVM+G++ATR I+ + Q + IIALTA A + ++ AG D + KP +
Sbjct: 640 DMRMPVMDGYQATRHIKSQLNGQSTI---IIALTASAFDEERALVLSAGCDDFVCKPFLE 696
Query: 1083 DKLLD 1087
+L+
Sbjct: 697 AVILE 701
>gi|347734151|ref|ZP_08867202.1| sensory box protein [Desulfovibrio sp. A2]
gi|347517020|gb|EGY24214.1| sensory box protein [Desulfovibrio sp. A2]
Length = 1067
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 138/277 (49%), Gaps = 31/277 (11%)
Query: 391 SMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSV 450
S K+ LA SH++R L AIIGL EL ++ P D+AENL ++ LLGI+N +
Sbjct: 512 SRAKSEFLANMSHEIRTPLNAIIGLTELSLQERLP-ADVAENLRASLVSAEALLGIVNDL 570
Query: 451 MEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGD 510
+++S++EAGK+ L +F A+L+ VV + H +KG+ + L D V +RGD
Sbjct: 571 LDLSRVEAGKLRLECIDFAPARLVRGVVRVMGHTAERKGLALTLH-IDRDV--PRRLRGD 627
Query: 511 RVKLKQILCNLVSNSMKFTSEG--HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRN 568
+L+Q+L N +SN++KFT EG H+ V A F D ++C +
Sbjct: 628 PGRLRQVLVNFISNAIKFTDEGGVHVVVCRAEPPGGFGGD---------AECALPTGMPD 678
Query: 569 KEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLG 628
D+ L F V DTG GIP+DK IFE F Q + G G
Sbjct: 679 AVPTGDIHWLC------------FSVRDTGIGIPEDKHELIFENFRQADASTARRYGGSG 726
Query: 629 LGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
LGL I + +M G I + D PG+ V F VLL
Sbjct: 727 LGLAICRKFTDMMGGRIVL-DSTPGQGSV---FRVLL 759
>gi|428312873|ref|YP_007123850.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428254485|gb|AFZ20444.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 653
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 142/282 (50%), Gaps = 36/282 (12%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A E AE + K+ L+K SH++R L AI+G ++ D E+L +I+ +
Sbjct: 171 QAKEAAEHANRAKSEFLSKMSHELRTPLNAILGFTQVITRDKALNPVHQEHLAVIKRSGE 230
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N V+EMSKIEAG++ L E F+L +LL + +M KG+ ++
Sbjct: 231 HLLSLINDVLEMSKIEAGRITLNENTFDLLRLLSSLEEMLQLKAKSKGLQLIFHYAPDL- 289
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+V+ D KL+Q+L NL+ N++KFTS G +++R ++K ++ NR + L
Sbjct: 290 --PQYVQSDESKLRQVLINLIGNAIKFTSSGGVALRVGRRQKL---EVKIQNR----ESL 340
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
K FF FEV+DTG GI D +S+F+ FVQ K T
Sbjct: 341 PKSFF-----------------------LYFEVEDTGPGIAADDLDSLFDPFVQTK-TGK 376
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
QEG GLGL I + V LM G I ++ G F+F+V
Sbjct: 377 ISQEGTGLGLPISKQFVQLMGGTITVSSTLGA--GTTFKFDV 416
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 23/133 (17%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L V+D K+ +L LG + NG+EA ++ I+M
Sbjct: 446 RLLAVDDRWESRKLLVHLLSPLGFQVREAENGQEAV-----------ALWESWQPHLILM 494
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHI-----PIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D +MPVM+G+EAT+ I+ H+ IIALTA A + I+ AG D L K
Sbjct: 495 DMQMPVMDGYEATQQIK-------AHLKGQATTIIALTASAFEADRTMILSAGCDDFLRK 547
Query: 1079 PLQKDKLLDVVKS 1091
P +++ LL+ + +
Sbjct: 548 PFREEVLLEKIAT 560
>gi|390455175|ref|ZP_10240703.1| phytochromeB [Paenibacillus peoriae KCTC 3763]
Length = 884
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 140/285 (49%), Gaps = 44/285 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AER K+ L+ SH++R + IIG+ L D + + +I + S
Sbjct: 629 IRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLL-ADTELDEEQRSYIDIITSSS 687
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
L+ ILN ++++SKIEAGKM L+ E F L ++ V D++ ++KG+ + D
Sbjct: 688 SALMQILNEILDLSKIEAGKMALLHEPFELENVMGSVADLFLRQAMEKGIQLEWH-VDQE 746
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ G GD+V+++Q+L NLVSN++KFT G I++ A K S ++ KC
Sbjct: 747 LPGV--FIGDQVRIRQVLVNLVSNAIKFTERGRINIFAEQKAYSRRK----------RKC 794
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
L EF V DTG GIP D+Q+ +F+ F Q+
Sbjct: 795 L----------------------------IEFSVTDTGIGIPADRQHLLFQPFSQIHPAL 826
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I +++V LM G I + D E + G FRF + L
Sbjct: 827 NRKYGGTGLGLSICENLVGLMGGSIGV-DSEDAQ-GSTFRFQLDL 869
>gi|333985046|ref|YP_004514256.1| histidine kinase [Methylomonas methanica MC09]
gi|333809087|gb|AEG01757.1| histidine kinase [Methylomonas methanica MC09]
Length = 644
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 166/353 (47%), Gaps = 74/353 (20%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E AE + K+ LA SH++R L AI+G L D + D ENL +I +
Sbjct: 176 AKEMAESANTAKSVFLATMSHEIRTPLNAILGFSNLLLTDQSLTQDQRENLSIIHRSGEH 235
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL--DP--CD 498
LL ++N +++M+KIEAGK++L + +L +++++ +M I+KG+ ++L DP C
Sbjct: 236 LLNLINDILDMAKIEAGKVQLETKSCDLVNMVDDIANMMRAHAIEKGLQLILIKDPDLCR 295
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
++ D KL+QI+ NL SN++KFT G + +R A+++ +
Sbjct: 296 -------YIEVDSQKLRQIIINLCSNAIKFTQRGGVVLRMAIERDN-------------- 334
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
+N +L+ EV+D+G GI D Q +F+ FV+V
Sbjct: 335 ------------------------QNAHLM---IEVEDSGIGINTDDQARLFQPFVRVGT 367
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDE 678
Q+G GLGL IV+ V LM G+IA+ K E G F + + +
Sbjct: 368 P--NSQKGTGLGLAIVREYVELMGGKIAVRSKP--EEGTVFTLTIPVLTI---------- 413
Query: 679 EDPRTHNDWPQTGLHQ-HFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
+ P GL+ + A G A ++++ +E R +LKR +EN
Sbjct: 414 -------EQPLVGLNTANQAKVIGLQAGQPEYRILIVEDQKENRILLKRLLEN 459
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 19/127 (14%)
Query: 964 KFLVVED---DAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
+ L+VED + I+LK +L +G + NG E + ++ +
Sbjct: 439 RILIVEDQKENRILLK---RLLENVGFVVSLATNGLEGVEQF-----------QSFHPHF 484
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I MD MPVM+G EAT+ IR + V I LTA A +++ +G D L KP
Sbjct: 485 IWMDMRMPVMDGLEATKKIRALDGGQQVKIA--TLTASAFTEQRDEMLASGSDDFLRKPY 542
Query: 1081 QKDKLLD 1087
+ D++ D
Sbjct: 543 RPDEIFD 549
>gi|397690654|ref|YP_006527908.1| multi-sensor hybrid histidine kinase [Melioribacter roseus P3M]
gi|395812146|gb|AFN74895.1| multi-sensor hybrid histidine kinase [Melioribacter roseus P3M]
Length = 749
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 145/289 (50%), Gaps = 51/289 (17%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL-I 436
IK A ++A ++S KT LA SH+VR + +++G + L D + +
Sbjct: 343 IKSDVAAQKARQESSYKTKFLANMSHEVRTPMNSVMGFLTLIENDLFESEEELKKFARDA 402
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VL 494
R ++ LL I+N+++++SKIEAGKMEL E EF+L+ + +V + +KG+D+ +
Sbjct: 403 RLAAESLLDIINNILDISKIEAGKMELEENEFDLSDEIHKVSSIIGQTARQKGIDIKEQI 462
Query: 495 DPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
DP + GD + +Q++ NLVSN++K+T EG +++ +K NR
Sbjct: 463 DPDLPD-----KIYGDATRYRQVVLNLVSNAVKYTDEGSVTISVEIK-----------NR 506
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
S ++ L SVE DTG GIP DK +FE +V
Sbjct: 507 TTSS----------------IEILTSVE-------------DTGSGIPNDKIPLLFEPYV 537
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
QVK+ +EG GLGL I + V LM G+I++ K PG G F F V
Sbjct: 538 QVKDKK-SQKEGTGLGLVIAKEFVKLMGGDISVESK-PGA-GSKFYFTV 583
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 12/120 (10%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
+ K+ L+VED+ I + +L ++G + +G +A D V K G+ Y
Sbjct: 624 SAKRLLLVEDNPISQDLELKILREVGYLVDAVSSGSDAIDAV--------KTGR---YSL 672
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MD EM M+G AT+ IR IPIIA+TAH+ K + AGM+ ++ KP+
Sbjct: 673 ILMDIEMSDMDGIAATKQIRNIPGDMG-KIPIIAVTAHSSMKDREKCLAAGMNDYIAKPI 731
>gi|409992461|ref|ZP_11275649.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
gi|291568252|dbj|BAI90524.1| two-component hybrid histidine kinase [Arthrospira platensis
NIES-39]
gi|409936686|gb|EKN78162.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
Length = 1494
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 133/264 (50%), Gaps = 34/264 (12%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
AE S K+ LA SH++R + A+IG+ L D + + + IRT LL I
Sbjct: 725 AEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLL-DMELTPEQRDFVETIRTSGDALLTI 783
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDGSVLGS 504
+N +++ SKIE+GK+EL ++ F L LEE +++ +KG+++ ++DP
Sbjct: 784 INDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRAAEKGLELAYIIDPSTPKT--- 840
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
+ GD +L+Q+L NLVSN++KFTSEG + + K+D+
Sbjct: 841 --ILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKKDV--------------- 883
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
+ FDD D S +FEV DTG GIP D+ + +F+ F QV +
Sbjct: 884 -----KKFDDSDFTES------HYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREY 932
Query: 625 EGLGLGLGIVQSMVHLMKGEIAIA 648
G GLGL I Q + LM G++ +A
Sbjct: 933 GGTGLGLAISQRLSQLMNGKMWVA 956
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 15/136 (11%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+P + L+ ED+ KV +L +LG + ++ NG E D + +
Sbjct: 1174 QPHANLRILLAEDNVTNQKVAIKLLERLGYRADIAGNGLEVLDALNR-----------QQ 1222
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP----IIALTAHAMAGVASKIVDAGMD 1073
YD I+MD +MP M+G E ++ I P IIA+TA+AM G ++AGMD
Sbjct: 1223 YDVILMDVQMPEMDGLETSKHICAAYSDGSDMGPRKPRIIAMTANAMQGDREMCLNAGMD 1282
Query: 1074 FHLTKPLQKDKLLDVV 1089
++TKP++++ L + +
Sbjct: 1283 DYITKPVRREALAEAL 1298
>gi|374815158|ref|ZP_09718895.1| putative multi-sensor hybrid histidine kinase [Treponema primitia
ZAS-1]
Length = 1516
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 169/356 (47%), Gaps = 78/356 (21%)
Query: 343 MLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQM-NATEQAERKSMNKTFALAKA 401
+ L L+ A ++++G+ I + AA+R ++ ++ NA QAE+ + +K+ LA
Sbjct: 761 IFLALIAAAILVTIGMAIFQVKNAAER-----IQMVNELENAMRQAEQANKSKSEFLANM 815
Query: 402 SHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKM 461
SH++R + AIIG+ EL + G + + + I+ +LL I+N +++ SKIEAGK+
Sbjct: 816 SHEIRTPMNAIIGISELVLREETAGR-VKDYINDIKQAGYNLLSIINDILDFSKIEAGKI 874
Query: 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNL 521
+++ + L+ LL +V+ + + I+ ++ + L ++ GD +++QIL NL
Sbjct: 875 QILSAPYRLSSLLNDVITI---IRIRVSEKPIIFMVNVDPLLPDNLTGDEARMRQILLNL 931
Query: 522 VSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSV 581
+SN+ K+T EGHI S
Sbjct: 932 LSNAAKYTKEGHIRFTV-----------------------------------------SG 950
Query: 582 ERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLM 641
ERN LL +FE+ D+G GI K+ +S+F +FV++ EG GLGL I +++ +M
Sbjct: 951 ERNGELLNLKFEIADSGIGIKKEDLDSLFGDFVRLDAERNRGIEGTGLGLAITRNLCLIM 1010
Query: 642 KGEIAI-------------------------ADKEPGERGVCFRF--NVLLTAVCE 670
G+I + A + PGE+GV F N+ ++C+
Sbjct: 1011 GGDITVNSEYGKGSVFTAQVSQQYTEGEALAAVESPGEKGVLFYHPQNIYTESICK 1066
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 11/127 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D L V +L A+ + C NG A V K PYD +++
Sbjct: 1172 RILIVDDITTNLTVAEGLLVPYKAQIDCCLNGLTAISKV-----------KETPYDLVLL 1220
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + Y +PIIALTA+A++G+ + G + +++KP++
Sbjct: 1221 DHMMPGMDGIETAKAIRALDLAYTKEMPIIALTANALSGMREMFLANGFNDYISKPIEIS 1280
Query: 1084 KLLDVVK 1090
+L DVV+
Sbjct: 1281 QLNDVVE 1287
>gi|358011449|ref|ZP_09143259.1| Sensor protein gacS [Acinetobacter sp. P8-3-8]
Length = 937
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 136/293 (46%), Gaps = 46/293 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A +QA + K+ LA SH++R L +I G + L N D + L IR S
Sbjct: 281 ARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNDQSLYLQTIRKSSAH 340
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K +++ D
Sbjct: 341 LLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIEMAFYFADNV-- 398
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+V GD ++ KQIL NL+SN++KFT +G I VR ++ I +CL
Sbjct: 399 -HKYVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------IGQCL- 444
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
LH F V D+G G+ + +FE F Q +
Sbjct: 445 ---------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGDASVTR 477
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERE 672
G GLGL I + +VHLM+G+I D + P E+G F F + + E
Sbjct: 478 QFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFVVNEDEE 530
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 85/170 (50%), Gaps = 14/170 (8%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSL--QQVAAQSDGKCSEKPLNGKKF--LVVED 970
Q DPN LN+ K+ S SS L Q V Q + G+ L V+D
Sbjct: 619 QMALDPNMLNEYKARPLYQPLSRSSVIQLLSNQPVFDQE----HHQDFKGRDLHILAVDD 674
Query: 971 DAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM 1030
L V A+LG+L K ++G+EA + L R + +D I MD +MPVM
Sbjct: 675 HLPNLIVLEALLGELNVKTTKAQSGQEALN-----LIQHRIDHDEKAFDLIFMDIQMPVM 729
Query: 1031 NGWEATRLIRKEEEQYD-VHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
+G + TR IR E D + +PIIALTAHA+A K++ GMD ++TKP
Sbjct: 730 SGIDTTRAIRSLESTLDDLRMPIIALTAHALADEKQKLLKVGMDDYVTKP 779
>gi|425744147|ref|ZP_18862207.1| GHKL domain protein [Acinetobacter baumannii WC-323]
gi|425491535|gb|EKU57816.1| GHKL domain protein [Acinetobacter baumannii WC-323]
Length = 936
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 155/356 (43%), Gaps = 73/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + +K+ LA SH++R L +I G + L N + L IR
Sbjct: 273 ITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 332
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K +++
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ HV GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 393 ENI---PQHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEDDE------------I 437
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 438 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 469
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F TA + E
Sbjct: 470 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWF----TASFKVEEQ 525
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
D E P HF Q++ ++A VL+ Y+EN
Sbjct: 526 DEFVEHP-------------HFDHL----------QVVSYLAHPATASVLRSYLEN 558
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 12/179 (6%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKF--LVVEDDA 972
Q DPN LN+ + A S +Q + Q + + NG+ L V+D
Sbjct: 616 QMSLDPNMLNE---YRARPLYQPLSRRELVQLLGNQPIFEQEPEDFNGQGLHVLAVDDHL 672
Query: 973 IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG 1032
L V A+LG+L +G++A D + + R E K+ P+D + MD +MPVM+G
Sbjct: 673 PNLIVLEALLGELNVTTTKALSGQKAIDIIQE-----RIEQKSPPFDLVFMDIQMPVMSG 727
Query: 1033 WEATRLIRKEEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ TR IR E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 728 IDTTRAIRSLESTLDNGMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|149376977|ref|ZP_01894731.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
gi|149358754|gb|EDM47224.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
Length = 935
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 161/350 (46%), Gaps = 52/350 (14%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN 432
L AA ++ +AE S+ K+ LA SH++R + A+IG +L +N D +
Sbjct: 563 LRAAKLEAERLAREAEAASLTKSEFLANMSHEIRTPMNAVIGYSDLL---SNTVKDPQQR 619
Query: 433 --LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV 490
L IR S+ LL ++N ++++S+IEAGKM L ++ +LL +V ++ ++G+
Sbjct: 620 NYLDAIRAGSRSLLMLINDILDLSRIEAGKMRLEYSAVSVRRLLSDVRHIFDLRATEQGI 679
Query: 491 DVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAV--KKKSFKQD 548
+ + D + + + D +L+Q+L NLV N++KFT EG ++VRA +K S KQ
Sbjct: 680 SLEVS-VDSKMPAAMML--DETRLRQVLFNLVGNAIKFTHEGGVTVRATATPRKSSEKQP 736
Query: 549 IIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNS 608
+ + V +C +L V DTG GIP D+Q
Sbjct: 737 VEETASEVDRRCFYRLVV--------------------------TVSDTGIGIPPDQQEQ 770
Query: 609 IFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
IF+ F Q + G GLGL I + +V +M GE+ + + EPG F V L V
Sbjct: 771 IFDAFEQQEGQNTRRYGGTGLGLAISRKLVRMMGGELQV-ESEPGAGST---FTVKLPRV 826
Query: 669 ----CERERPDTDEEDPR--------THNDWPQTGLHQHFASFWGSAAKS 706
+ E T EE R W Q L + F W + +S
Sbjct: 827 EATGAQAEEDGTPEESERLLAQTLSMQERGWLQEQLARDFGDEWETVRES 876
>gi|117925117|ref|YP_865734.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117608873|gb|ABK44328.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 780
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 156/306 (50%), Gaps = 55/306 (17%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN-LGLIRTC 439
+ A EQAE + K+ LA SH++R + +I+G+ EL E +P T + L + R
Sbjct: 390 LTAKEQAEAANRTKSEFLAMMSHEIRTPMNSILGMAELLSE--SPLTPEQQGYLKIQRRA 447
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
LL ++N ++++SK+EAG++EL + FNL +LL+ VVD+ ++ ++G+ + L+ +
Sbjct: 448 GHGLLELINDILDLSKLEAGRIELYIQPFNLPELLQSVVDLLENLARERGLALRLERME- 506
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
+ C +GDR +L+QI+ NLV N++KFT +G SV+ +V+K S
Sbjct: 507 EIPTLC--QGDRARLRQIMVNLVGNAIKFTHDG--SVKISVEKSS--------------- 547
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
DD NLL F V D+G GI + Q+S+F+ F Q+ +
Sbjct: 548 -------------DD---------ATNLL---FHVIDSGIGIAEKDQSSVFQRFTQIDSS 582
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP----D 675
G GLGL I +V LM G+I + K G CF F + L V + + P
Sbjct: 583 NSRFYGGSGLGLAITHHLVELMGGKIWL--KSALGEGSCFTFTLPLPPV-QIDEPALAAT 639
Query: 676 TDEEDP 681
DEE P
Sbjct: 640 HDEEAP 645
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 955 CSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK 1014
C+ KPL + L+ ED + L +NG EA+ V +KE
Sbjct: 653 CATKPL---RILLAEDSPDNELLIRIFLRDSPHSLCCVKNGLEAYQQV-------QKEN- 701
Query: 1015 ALPYDYIMMDCEMPVMNGWEATRLIR--KEEEQYDVHIPIIALTAHAMAGVASKIVDAGM 1072
+D I+MD +MPVM G EA IR ++ +Q D I IIALTAHAM+ + G
Sbjct: 702 ---FDLILMDIQMPVMGGDEAIIKIRAWEQSQQCDPTI-IIALTAHAMSEHQKHYLTLGF 757
Query: 1073 DFHLTKPLQKDKLLDVV 1089
D L+KP+ K LL+ +
Sbjct: 758 DAFLSKPINKKTLLNAL 774
>gi|262377433|ref|ZP_06070656.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145]
gi|262307663|gb|EEY88803.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145]
Length = 935
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 139/306 (45%), Gaps = 48/306 (15%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + + L IR
Sbjct: 273 ITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLLLRQGNLSNEQSLYLQTIR 332
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K +D+
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIDMAFYYA 392
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
DG H+ GD ++ KQIL NL+SN++KFT +G I VRA ++ Q
Sbjct: 393 DGV---PKHIIGDALRFKQILTNLISNAIKFTPDGEIIVRARMEHDGMDQ---------- 439
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
C+ LH F V D+G G+ + +FE F Q
Sbjct: 440 --CV----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 469
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNV--LLTAVCERE 672
+ G GLGL I + +V LM G+I D + P E+G F F L+ E
Sbjct: 470 TSVTRQFGGTGLGLAISKQLVSLMHGQIGFEDNQERAPTEKGSTFWFTAQFLVDEDTVIE 529
Query: 673 RPDTDE 678
PD E
Sbjct: 530 HPDFSE 535
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 7/167 (4%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIV 974
Q DP+ LN ++ S S+ L + E G L V+D
Sbjct: 615 QMQLDPSMLNDHRARALHQPLSRSALIQLLGNQPVFDQEQHEEFNGQGLHILAVDDHLPN 674
Query: 975 LKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWE 1034
L V A+LG+L +G+EA D + + R E + +D + MD +MPVM+G +
Sbjct: 675 LIVLEALLGELNVTTTKALSGQEAIDIIQR-----RYEQEQPAFDLVFMDIQMPVMSGID 729
Query: 1035 ATRLIRKEEEQYDVH--IPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
TR IR E ++ H +PIIALTAHA++ K++ GMD ++TKP
Sbjct: 730 TTRAIRSLESTFENHNRLPIIALTAHALSDEKHKLLQNGMDDYVTKP 776
>gi|406895653|gb|EKD40162.1| hypothetical protein ACD_75C00157G0004, partial [uncultured
bacterium]
Length = 972
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 144/283 (50%), Gaps = 40/283 (14%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
AE + K+ LA SH++R + AIIG+ L E A G L +++T S+ LL +
Sbjct: 483 AEDSNRAKSEFLAAMSHEIRTPMNAIIGMTGLMQESALTGQQ-QHYLKVVQTASEHLLIL 541
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH 506
+++V + SKIEA K+EL+E FNL +L+ + V M+ + +KG+ + C+ +
Sbjct: 542 IDNVFDFSKIEAKKLELLEAPFNLQELVVDTVAMFEYQTEQKGLHL---SCNVDPNIPAY 598
Query: 507 VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFF 566
V GD +L+QIL NL+ N+ KFT +G I V A ++++ N
Sbjct: 599 VCGDFQRLRQILVNLIGNAQKFTKKGRIDVHVA---------LVSATEN----------- 638
Query: 567 RNKEGFDDLDALHSVERNPN-LLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
S E P+ L+ F V+DTG GIP QN IF+ F Q+ +
Sbjct: 639 -------------SREAPPSQLVTLLFRVEDTGIGIPPSGQNKIFDSFTQLDGSFRRKNG 685
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
G+GLGL I + +V LM G+I + + PG G F F V L ++
Sbjct: 686 GVGLGLTIAKQLVCLMGGKIQV-ESRPGS-GSRFSFTVSLKSI 726
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 81/142 (57%), Gaps = 16/142 (11%)
Query: 952 DGKCSEKPLNGKKFLVVEDDAIVLKV-TSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLR 1010
+G + +PL+ +++ DD +V +V T+A+LGK G NG EA D LR
Sbjct: 741 EGAAAGRPLH----ILLADDLLVNQVITAAILGKWGHSIRAVFNGVEALDA-------LR 789
Query: 1011 KEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDA 1070
+E +D ++MD +MP+M+G +A R IR ++ IP++ALTAHA+ G + + A
Sbjct: 790 QEH----FDLVLMDVQMPLMDGLDAVRHIRASTDKNIARIPVVALTAHAVKGDRERFLKA 845
Query: 1071 GMDFHLTKPLQKDKLLDVVKSI 1092
GM+ ++ KP++ LL + I
Sbjct: 846 GMNAYIAKPVRSAALLQAIGKI 867
>gi|443314808|ref|ZP_21044338.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 6406]
gi|442785576|gb|ELR95386.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 6406]
Length = 1070
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 154/304 (50%), Gaps = 30/304 (9%)
Query: 358 LFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVE 417
LF+ I + + E L +A M + + + K+ LA SH++R L AI+G +
Sbjct: 535 LFLEDITQHKQIEAELISAKEDAMREAAASAKANQAKSEFLANMSHELRTPLNAILGFTQ 594
Query: 418 LCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEV 477
+ D + + NL +I + LLG++N V+EMSKIEAG+++L F+L++LL ++
Sbjct: 595 IISRDLSLAQEHQTNLKIINRSGQHLLGLINDVLEMSKIEAGRVQLNLNSFDLSRLLYDL 654
Query: 478 VDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVR 537
M +K + ++ GS L +V GD KL+Q+L NL+ N++KFT+ GH+ +R
Sbjct: 655 EAMLGVRAQEKKLKLIFK--YGSELPR-YVEGDEGKLRQVLLNLLGNAIKFTTMGHVILR 711
Query: 538 AAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDT 597
VK + ++ + + + P+ + EFE++DT
Sbjct: 712 --VKSVPLQSPTADTDTDTDTDAVP----------------------PSAITLEFEIEDT 747
Query: 598 GKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGV 657
G GI + +IF+ F+Q K +A +EG GLGL I Q + LM GEI I +G
Sbjct: 748 GPGIAAEDLTAIFQPFIQAK-SAQNVREGTGLGLVISQKFIRLMGGEITICSAL--GQGS 804
Query: 658 CFRF 661
F+F
Sbjct: 805 TFKF 808
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 29/141 (20%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED + +L LG + RNG+E +R + P+ I+M
Sbjct: 840 RILIVEDQWENSQFLVKLLVPLGFAIKEARNGQEG----------IRIWAQWHPH-LILM 888
Query: 1024 DCEMPVMNGWEATRLIRKEEE--QYD----------------VHIPIIALTAHAMAGVAS 1065
D +M VMNG +AT+ IR E Q+ V I+ALTA+ +
Sbjct: 889 DMKMSVMNGVDATQAIRTMERGRQFQNRHRDPSQGTLPPYTLVPTKILALTANVFESMQL 948
Query: 1066 KIVDAGMDFHLTKPLQKDKLL 1086
K V+ G D L KP+Q LL
Sbjct: 949 KAVEIGCDDFLRKPIQGTMLL 969
>gi|428319759|ref|YP_007117641.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428243439|gb|AFZ09225.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1700
Score = 126 bits (317), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 149/286 (52%), Gaps = 32/286 (11%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA-ENLGLIRT-- 438
A E A S K+ LA SH++R + ++G+ +L + T+L E L ++T
Sbjct: 1010 QAREAALEASRMKSLFLANMSHEIRTPMNGVMGMTDLLLK-----TNLTPEQLDFVQTLK 1064
Query: 439 -CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
++LL I+N ++++SK+EAG+M L EFNL+ + EV+D+ +KG++VV
Sbjct: 1065 LSGQNLLSIINDILDLSKLEAGEMRLEILEFNLSICMNEVLDLLATPAQEKGIEVVA-LI 1123
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V ++GD +L+QIL NL++N++KFT G + + A ASN ++
Sbjct: 1124 DSDV--PVQIKGDAARLRQILTNLINNAIKFTEAGEVVIEVAN----------ASNPGLL 1171
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+ ++ N E +E N +L+ F+V DTG GI + + +F+ F QV
Sbjct: 1172 AASENQKILENIEKL-------KIENN-DLMLLLFKVTDTGIGIAPEDKKKLFQSFTQVD 1223
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ G GLGL I + +V LM G+I + + PG+ G F F V
Sbjct: 1224 ASTTRKYGGTGLGLAISKELVELMGGQIGV-ESTPGQ-GSTFWFTV 1267
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 20/142 (14%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+ L K L+VED I KV L LG +V NG EA V L+K
Sbjct: 1438 RELASLKILLVEDTPINQKVGLNQLRVLGCTADVANNGAEALSMVA-----LKK------ 1486
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEE--------EQYDVHIPIIALTAHAMAGVASKIVD 1069
YD ++MDC+MPV++G+EATR +R+ E E + + +IA+TA+A+ G K +
Sbjct: 1487 YDIVLMDCQMPVLDGYEATRELRRREAADAAGNMEPHQKTV-VIAMTANALKGDREKCLA 1545
Query: 1070 AGMDFHLTKPLQKDKLLDVVKS 1091
AGMD +++KP+ +KL V+++
Sbjct: 1546 AGMDDYISKPISIEKLKSVLEN 1567
Score = 44.3 bits (103), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
E L G+K LV D V K+ + G + E NG + K +S
Sbjct: 1286 ETVLAGRKMLVASDKPTVRKLLVRMAVLWGMEVEEVENGWMTIASLYKAVS------LNS 1339
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
PYD +++D ++P M RL + E + LT+ A ++V++G +L
Sbjct: 1340 PYDIVLVDIQLPEMVAGSLERL--RISEPAMQQTKWVVLTSTNQLAEAKRLVNSGFSGYL 1397
Query: 1077 TKPLQKDKLLD 1087
TKP++ +L D
Sbjct: 1398 TKPVKAHRLFD 1408
>gi|428769178|ref|YP_007160968.1| Cache sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
gi|428683457|gb|AFZ52924.1| Cache sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
Length = 899
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 146/290 (50%), Gaps = 44/290 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++AE + K+ LA SH++R L AI+G ++ + + E++ +I +
Sbjct: 431 AKDKAEVANQAKSEFLANMSHELRTPLNAILGFAQIMRKSPTLPEEHQESIEIINRSGEH 490
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N+++++SKIEAGK+ L +E +L +LL+E+ D++ + KKG+ ++ + D
Sbjct: 491 LLTLINNILDLSKIEAGKITLNKENIDLYKLLDEIEDIFKYKAEKKGIHLIFEKLDNL-- 548
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++ D KL+QI+ NLVSN++KFT EG +S++ + K
Sbjct: 549 -PQFIKTDAPKLRQIIINLVSNAIKFTEEGGVSLQGTINK-------------------- 587
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
L++ E+ LL F + DTGKGI + ++F+ F Q K +
Sbjct: 588 ---------------LNNNEKKVELL---FIIRDTGKGIKHQELATLFQPFTQTK-SGKE 628
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
EG GLGL I + V LM G I ++ +E G F F V + + E
Sbjct: 629 VNEGTGLGLSISKKFVELMGGNIKVSSEE--NVGTIFSFTVQTEIIPDYE 676
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+V+D I ++ +L G + + NGK+A KI K P+ I M
Sbjct: 697 KILIVDDKEINCQLLVKLLKPFGFELKEANNGKQA----VKIWE------KWQPH-LIFM 745
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM+G+EAT++I+ + IIA+TA + + I+ AG D + KP +++
Sbjct: 746 DMRMPVMDGYEATKIIKGTTKGNAT--AIIAVTASVLEEEKAIILSAGCDDFVRKPFRQE 803
Query: 1084 KLLDVV 1089
+ ++
Sbjct: 804 TIFSML 809
>gi|390950873|ref|YP_006414632.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390427442|gb|AFL74507.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 1091
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 143/312 (45%), Gaps = 50/312 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E AER S K+ LA SH++R + AIIGL L A+ E+L I ++
Sbjct: 479 AKESAERASQAKSRFLANMSHEIRTPMNAIIGLSHLARRHASEPRQ-QEHLRKIAESAQH 537
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGS 500
LLG++N V+++SKIE G+++L E +F LA++LE + + KG+ + + P
Sbjct: 538 LLGVVNDVLDISKIEGGRIQLEEADFALAKVLENLRTLTADKATAKGLRIRQEIAPALAG 597
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+L RGD ++L QIL N V N++KFT G I +RA V +++
Sbjct: 598 IL-----RGDALRLGQILLNFVVNAVKFTERGEIVLRAWVLEETA--------------- 637
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
LD L FEV DTG GI Q +F F Q +
Sbjct: 638 --------------LDLL-----------VRFEVKDTGIGIALADQARLFVAFEQADSSI 672
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
G GLGL I + + HLM+GEI + + +PGE G F F L E D
Sbjct: 673 TRRYGGTGLGLAINRRLAHLMRGEIGV-ESQPGE-GSLFWFTARLGKGAEPAGRAGMSGD 730
Query: 681 PRTHNDWPQTGL 692
P T + P L
Sbjct: 731 PETADSAPDRRL 742
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G + L+ ED+ I +V + L +LG ++ NG EA + R+ AL I
Sbjct: 748 GLRLLLAEDNPINQEVALSQLQELGFAVDLASNGAEAVELA-------RRNAYAL----I 796
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MD +MP MNG EATR IR+ + PI+A+TA A + + AGMD HL KP+
Sbjct: 797 LMDVQMPTMNGLEATRAIRRLPGR--AVTPILAMTAGAFQEDREECLAAGMDDHLAKPVD 854
Query: 1082 KDKL 1085
D L
Sbjct: 855 PDVL 858
>gi|308067783|ref|YP_003869388.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
gi|305857062|gb|ADM68850.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
Length = 891
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 141/285 (49%), Gaps = 44/285 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AER K+ L+ SH++R + IIG+ L D + + +I + S
Sbjct: 629 IRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLL-ADTELDEEQRSYIDIITSSS 687
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
L+ ILN ++++SKIEAGKM L+ E F L ++ V D++ ++KG+++ D
Sbjct: 688 GALMQILNEILDLSKIEAGKMSLLHESFVLDNVVGSVADLFMMQAMEKGIELKWH-VDQE 746
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ G + GD V+++Q+L NLVSN++KFT G +++ V++K++
Sbjct: 747 MPGM--LVGDHVRIRQVLVNLVSNAIKFTERGRVNI--FVERKAYS-------------- 788
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
R+ N EF V DTG GIP D+Q+ +F+ F Q+
Sbjct: 789 ----------------------RHKNRCLIEFSVTDTGIGIPADRQHLLFQPFSQLHPAL 826
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I +++V LM G I + E RG FRF + L
Sbjct: 827 NRKYGGTGLGLSICKNLVKLMGGSIGVDSDEA--RGATFRFQLDL 869
>gi|345873354|ref|ZP_08825267.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343917313|gb|EGV28118.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1362
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 144/309 (46%), Gaps = 52/309 (16%)
Query: 358 LFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVE 417
L ++ A+ K + + A L ++ + E A R K+ LA SH++R + AI+GL
Sbjct: 723 LGMVGCARDIKPQRDMAAELERRAHEAESAVRA---KSAFLANMSHEIRTPMNAILGLTH 779
Query: 418 LCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEV 477
L D T++A L I ++ LL I+N ++++SKIEAGK++L E +F L LL++V
Sbjct: 780 LLRRDLANATNIA-RLEKIDIAARHLLTIINDILDLSKIEAGKLKLDEGDFALGALLDQV 838
Query: 478 VDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVR 537
+ KG+DV ++ S+ +RGD +L Q L N SN++KFT G + +R
Sbjct: 839 RSLVIESAEAKGLDVSIEIDQPSLW----LRGDVTRLLQALLNYASNAVKFTEHGGVVLR 894
Query: 538 AAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDT 597
A V DD D ++ FEV DT
Sbjct: 895 ARVLA------------------------------DDADG----------MRLRFEVQDT 914
Query: 598 GKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE-RG 656
G GIP+DK + +F F Q + G GLGL I + LM GE + E GE G
Sbjct: 915 GVGIPRDKVSRLFHAFEQADSSTTRRYGGTGLGLAITHELARLMDGEAGV---ETGEGTG 971
Query: 657 VCFRFNVLL 665
F F V L
Sbjct: 972 SVFWFTVRL 980
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G + L+ ED+ I +V +L +G E NG+EAF+ EG Y +
Sbjct: 1007 GARLLLAEDNPINCEVLLDLLRSVGLVVETAANGQEAFEMAA--------EGD---YALV 1055
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MD +MPVM+G +ATR IR PI+A+TA+A +DAGM+ + KP+
Sbjct: 1056 LMDVQMPVMDGLQATRAIRGLPGWS--KRPILAVTANAFDDDRHACLDAGMNDFVAKPVD 1113
Query: 1082 KDKLL 1086
L
Sbjct: 1114 PHDLF 1118
>gi|443477473|ref|ZP_21067318.1| integral membrane sensor hybrid histidine kinase [Pseudanabaena
biceps PCC 7429]
gi|443017406|gb|ELS31856.1| integral membrane sensor hybrid histidine kinase [Pseudanabaena
biceps PCC 7429]
Length = 758
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 143/282 (50%), Gaps = 47/282 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++AE S K+ +A SH++R+ L AIIG ++ N + EN+ +I +
Sbjct: 292 AKDRAEVASKAKSAFIANMSHELRSPLNAIIGFSQVMLRTKNLSPEQYENINIIHRSGEY 351
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N+V++ SKIEAGK L ++ +L QLL+++ DM + + G++++LD G++
Sbjct: 352 LLTLINNVLDFSKIEAGKNTLNSKDIDLYQLLDDLEDMLHLRAVNAGLELILDRG-GNLP 410
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
H G VKL+Q+L NL+ N++KFT +G + +R
Sbjct: 411 RYIHTDG--VKLRQVLLNLLGNAIKFTQQGEVVLR------------------------- 443
Query: 563 KLFFRNKEGFDDLDALHSVERN-PNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
+ S+E + P F+V DTG GI ++ + +FE F Q E+
Sbjct: 444 ---------------MSSIENSEPQSYSLNFQVSDTGVGIAPEELDQLFEAFSQT-ESGR 487
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
QEG GLGL I + V LM G+I + E G +G F F++
Sbjct: 488 EAQEGTGLGLTISRQFVRLMGGDITVT-SELG-KGTTFNFSI 527
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K LVV+D I ++ +L LG + + NG+EA +A I M
Sbjct: 556 KILVVDDKPINRQLLVKLLAPLGFEVKEASNGQEAIVM-----------WEAWQPHLIWM 604
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM+G+EAT+ I+ + IIALTA + + I+ AG D + KP ++
Sbjct: 605 DMRMPVMDGYEATKYIKSTTQGNAT--AIIALTASVLEQEKAIILSAGCDDFMRKPFKEQ 662
Query: 1084 KLL 1086
+
Sbjct: 663 TIF 665
>gi|294649346|ref|ZP_06726778.1| histidine kinase [Acinetobacter haemolyticus ATCC 19194]
gi|292824786|gb|EFF83557.1| histidine kinase [Acinetobacter haemolyticus ATCC 19194]
Length = 937
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 143/309 (46%), Gaps = 51/309 (16%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + +K+ LA SH++R L +I G + L N + L IR
Sbjct: 273 ITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 332
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N+V++ SKI+AGK+EL F+L + + +V+DM + +K +++
Sbjct: 333 KSSAHLLALINNVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ HV GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 393 ENI---PQHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEDDD------------I 437
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 438 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 469
Query: 618 ETALGHQEGLGLGLGIV-QSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERER 673
+ G GLGL I Q +VHLM+G+I D + P E+G F F TA + E
Sbjct: 470 ASVTRQFGGTGLGLAISKQLVVHLMRGQIGFEDNQERAPTEKGSTFWF----TAAFKVEE 525
Query: 674 PDTDEEDPR 682
D E PR
Sbjct: 526 EDAFVEHPR 534
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 96/179 (53%), Gaps = 12/179 (6%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKF--LVVEDDA 972
Q DPN LN+ + A S +Q +A Q + + NG+ L V+D
Sbjct: 617 QMSLDPNMLNE---YRARPIYQPLSRRELIQLLANQPIFEQEPEDFNGQGLHVLAVDDHL 673
Query: 973 IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG 1032
L V A+LG+L +G++A D + + R E K+ P+D + MD +MPVM+G
Sbjct: 674 PNLIVLEALLGELNVTTTKALSGQKAIDLIQE-----RIEQKSPPFDLVFMDIQMPVMSG 728
Query: 1033 WEATRLIRKEEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ TR IR E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 729 IDTTRAIRSLESTLDTGMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 787
>gi|374322486|ref|YP_005075615.1| sensor protein [Paenibacillus terrae HPL-003]
gi|357201495|gb|AET59392.1| sensor protein [Paenibacillus terrae HPL-003]
Length = 891
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 138/285 (48%), Gaps = 44/285 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AER K+ L+ SH++R + IIG+ L D + + +I S
Sbjct: 629 IRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLL-ADTELDEEQRSYIDIITNSS 687
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
L+ ILN ++++SKIEAGKM L+ E F L +++ V D++ ++KG+++ D
Sbjct: 688 SALMQILNEILDLSKIEAGKMSLLHEPFRLEEVIGSVADLFLKQAMEKGIELEWH-LDQE 746
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ G + GD V+++Q+L NLVSN++KFT G + V K S ++ KC
Sbjct: 747 LPGM--LVGDHVRIRQVLVNLVSNAVKFTERGRVYVFVERKAHSHRK----------KKC 794
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
L EF V DTG GIP ++Q+ +F+ F Q+
Sbjct: 795 L----------------------------VEFSVRDTGIGIPTNRQHLLFQPFSQLHPAL 826
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I +++V LM G I + E RG FRF + L
Sbjct: 827 NRKYGGTGLGLSICKNLVSLMGGSIDVDSDEA--RGATFRFQLDL 869
>gi|160937196|ref|ZP_02084558.1| hypothetical protein CLOBOL_02086 [Clostridium bolteae ATCC
BAA-613]
gi|158439760|gb|EDP17509.1| hypothetical protein CLOBOL_02086 [Clostridium bolteae ATCC
BAA-613]
Length = 770
Score = 126 bits (316), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 104/335 (31%), Positives = 162/335 (48%), Gaps = 55/335 (16%)
Query: 347 LMFIAGVISLGL--FIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHD 404
+AGV +L + F+I + AAK+ L + A + AE + KT SHD
Sbjct: 216 FFLMAGVCALIIIGFVIFYSDAAKQ------ILRAEEKARKAAESANEAKTNFFTSMSHD 269
Query: 405 VRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELV 464
+R + AIIG+ E+ + LG IR K L+G++N +++M+KIE+GKME+
Sbjct: 270 IRTPMNAIIGMTEIAVNHLDDPNKTMNCLGQIRRSGKLLVGLVNDILDMAKIESGKMEIH 329
Query: 465 EEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSN 524
E +LA+L+E +V + + +K D + C V H+ D V++ Q+L NL+SN
Sbjct: 330 AERTSLAELIENIVVVITPLVKEKNQDFQI--CIREVRHE-HLMLDSVRMNQVLMNLISN 386
Query: 525 SMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERN 584
++KFT EG S+R V++ S+ +
Sbjct: 387 AIKFTPEGG-SIRVTVEE-------------------------------------SLSPH 408
Query: 585 PNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGE 644
P F F V DTG G+ ++ QN+IF FV+ +++ + H EG GLG+ I +V M G
Sbjct: 409 PGQAHFTFTVSDTGMGMSREFQNNIFTAFVRERDSRVDHIEGSGLGMAITGMIVANMGGS 468
Query: 645 IAIADKEPGERGVCFRFNVLLTAVCERERPDTDEE 679
I + + EPG + F V L C R P+ D E
Sbjct: 469 IRV-ESEPGMGSI---FTVELD-FC-RAEPEMDSE 497
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 17/160 (10%)
Query: 942 SSLQQVAAQ--------SDGKCSEKP-LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVC 992
S+L+Q+ Q +C+E P L GK+ L+VED+ I ++ ++ + GA +
Sbjct: 617 STLEQIVRQYVLHTEAVRRPECAETPILAGKRILLVEDNLINQEIVKELMEQTGAAVDAA 676
Query: 993 RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPI 1052
NG+E D + ++G YD I+MD +MPVMNG+EATRLIR + IPI
Sbjct: 677 YNGREGADRYASM-----EDGY---YDLILMDIQMPVMNGYEATRLIRGMNRRDAGSIPI 728
Query: 1053 IALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
A+TA A A + AGMD HL+KP+ L+ + +
Sbjct: 729 FAMTADAFAEDIAMARQAGMDRHLSKPIDAVSLMQEITRV 768
>gi|434393557|ref|YP_007128504.1| Cache sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
gi|428265398|gb|AFZ31344.1| Cache sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
Length = 925
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 144/285 (50%), Gaps = 41/285 (14%)
Query: 380 QMNATEQA-ERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
Q+N +QA E + K+ LA SH++R L A++G L ++DA+ + ENL +I
Sbjct: 444 QLNEAKQAAEAANRAKSEFLANMSHELRTPLNAVLGFTTLMNQDASLTAEQRENLKIINR 503
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
+ LL ++N V++M+KIEAG++ L ++ F+L LL+ + +M+ KG+ + +
Sbjct: 504 SGEHLLTLINDVLDMAKIEAGRITLNKKNFDLYSLLDTIEEMFSCKAQLKGLQL---QIE 560
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
++ ++ D +KL+QIL NLV N++KFT EG++ +R + QD +
Sbjct: 561 HTLEVPRYINSDEIKLRQILINLVGNAIKFTQEGYVFLRVTTVE---NQDTTPKPTPQTT 617
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
LH FEV+DTG GI + +F+ FVQ E
Sbjct: 618 -------------------LH------------FEVEDTGIGIAAHETEMLFKPFVQT-E 645
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
T ++G GLGL I V LM G I ++ K +G F+F++
Sbjct: 646 TGRKSEQGTGLGLAITHKFVQLMGGAITLSSKLG--KGTIFQFDI 688
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D + ++ L +G + NG++A + I P+ +I+M
Sbjct: 716 RILVVDDHLAMRRILKQTLTNIGFEVREAENGQDAI-ALWNIWE---------PH-FILM 764
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP+++G+EAT+ I+ + + I+A TA A + ++ G D + KP +++
Sbjct: 765 DMRMPIVDGYEATQYIKSQPKGQST--IIVAFTASAFEQERATVLATGCDDFIRKPFREE 822
Query: 1084 KLLDVVK 1090
+ + +K
Sbjct: 823 VIWEKLK 829
>gi|359462985|ref|ZP_09251548.1| two-component hybrid sensor and regulator [Acaryochloris sp. CCMEE
5410]
Length = 1076
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 145/284 (51%), Gaps = 38/284 (13%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A ++A+ S K+ LA SH++R + A+IG+ L + + + IR+
Sbjct: 539 TAKDRADAASQVKSEFLANMSHELRTPMNAVIGMTGLLTHTSLDAQQ-QDFVDTIRSSGD 597
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDG 499
LL ++N +++ SKIEAGK+E+ E+ FNL +EE + + KKG+++ + DP
Sbjct: 598 ALLCLINDILDFSKIEAGKLEVEEQPFNLKSCIEEALKLVAPRAFKKGLEIAYLADPD-- 655
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
C + GD +L+Q+L NL++N +KFT G + V + +D+ A
Sbjct: 656 ---LPCGIVGDVTRLRQVLVNLLTNGVKFTDNGEVIV--------YVKDVTAE------- 697
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
+++EG L S ++P L F+F V DTG GIP+D+ N +F+ F QV +
Sbjct: 698 ------MQDREG------LGSEGQSPRRL-FQFAVKDTGIGIPEDRLNRLFQSFSQVDSS 744
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + + LM G+I + D E G G F F +
Sbjct: 745 TTRKYGGTGLGLAISKRLCELMGGKIWV-DSEIG-IGSTFSFTI 786
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 12/121 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L+ ED + KV +L +LG + +V NGKE +L L ++ PYD ++MD
Sbjct: 952 LLLAEDVVVNQKVALLILKQLGYEADVANNGKE-------VLEALHRQ----PYDVVLMD 1000
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
+MP M+G A+R I +E + IIALTA+AM G K ++AGM +++KP++ ++
Sbjct: 1001 LQMPEMDGLTASRAI-QETWSPEARPYIIALTANAMQGDREKCLEAGMQDYVSKPIRSEE 1059
Query: 1085 L 1085
L
Sbjct: 1060 L 1060
>gi|291566667|dbj|BAI88939.1| two-component hybrid histidine kinase [Arthrospira platensis
NIES-39]
Length = 1062
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 138/282 (48%), Gaps = 47/282 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A E A+ + +K+ LA SH++R L AI+G +L + N + +++ +I +
Sbjct: 574 QAKEIADAANRSKSEFLANMSHELRTPLNAILGFAQLMSTNQNLAPENRQHIEIINRSGE 633
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LLG++N ++EMS+IEAG+ L F+L + L+ + D++ K + ++ + G +
Sbjct: 634 HLLGLINDILEMSRIEAGRATLQVNGFDLYEFLQGLEDLFKLRATSKNLHLIFERPKGLI 693
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
H++ D KL+Q+L NL+ N++KFT EG ++VR +
Sbjct: 694 R---HIKADEKKLRQVLINLLGNAIKFTDEGSVTVRVS---------------------- 728
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
+N++ D LLQ FEV+DTG GI + +FE F Q ET L
Sbjct: 729 ----HQNRDASD-------------LLQ--FEVEDTGLGIAPEDCEGLFEAFAQT-ETGL 768
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
EG GLGL I Q V LM EI + + RG F F +
Sbjct: 769 NASEGSGLGLAIAQQFVKLMGDEITV--RSCLNRGSTFSFTI 808
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D I MD MPV+NG+EATR IR + + IIALTA A I+ G + L K
Sbjct: 883 DLIFMDMRMPVVNGYEATRQIRSQPGGGET--IIIALTASAFEEQRQDIMKVGCNDLLRK 940
Query: 1079 PLQKDKLL 1086
P Q+ +LL
Sbjct: 941 PFQRGELL 948
>gi|288960032|ref|YP_003450372.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
gi|288912340|dbj|BAI73828.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
Length = 751
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 142/286 (49%), Gaps = 49/286 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIR 437
+A AE S K+ LA SH++R + A+IG+ +L GT L E + +R
Sbjct: 224 DARVAAENASRAKSRFLAMMSHELRTPMTAVIGMGDLLL-----GTGLNEQQIALVKTLR 278
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
+ + L+ ILN V++ SKIEAG++ L E +F+L +L+E+VV ++ KG+ +
Sbjct: 279 SSADTLMTILNDVLDFSKIEAGQLTLEEIDFSLPRLVEDVVQLFLVRAAAKGLSLSASIA 338
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ + H+RGD +L+Q+L NLVSN++KFT G I + + D AS
Sbjct: 339 ENT---PRHIRGDPTRLRQVLYNLVSNAIKFTDRGAIEI------AVWSPDPPAS----- 384
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+ +P + FEV D G G+ D++ +F+ FVQ
Sbjct: 385 ----------------------PLSASP--MTLRFEVQDDGIGMTADQRARLFDAFVQAD 420
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ G GLGL I + +V M GEI++A PG RG FRF++
Sbjct: 421 ASTSRKYGGTGLGLSICKRLVEAMGGEISVAST-PG-RGSTFRFSI 464
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 15/138 (10%)
Query: 948 AAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILS 1007
A ++ ++ PL + L+ ED+ I + A++ + G + + +G+ A D +
Sbjct: 484 AEMTEEPAAQVPL---RLLLAEDNDINRMLVVAMMSRAGHRIDAVTDGRAALDAIAAADY 540
Query: 1008 DLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKI 1067
D +++D EMPV++G R IR+ + IPI+ L+A AM
Sbjct: 541 D-----------ALILDMEMPVLDGRATARAIRRMDGPV-ARIPIVGLSADAMPEHRDGH 588
Query: 1068 VDAGMDFHLTKPLQKDKL 1085
+ AG+D +LTKP+ D+L
Sbjct: 589 MAAGLDAYLTKPIDWDQL 606
>gi|383764048|ref|YP_005443030.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381384316|dbj|BAM01133.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 731
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 146/286 (51%), Gaps = 40/286 (13%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPG--TDLAENLGLIRTCSKDL 443
+AE S K+ LA SH++R L A+IG+ L + A + AE IR + L
Sbjct: 199 EAEAASRAKSEFLANISHEIRTPLNAVIGMTTLLLDSALTAEQREFAET---IRISGEAL 255
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLG 503
L +LN V++ SKIEAG++EL F+ + +EE V ++ KG+++VL P + VL
Sbjct: 256 LSLLNDVLDFSKIEAGRLELERIPFDAMKCVEEAVSLFARQASAKGIELVLLPEN--VLP 313
Query: 504 SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSK 563
V GD V+L+QIL NLV+N++KFT EG I V V + D S+
Sbjct: 314 D-RVMGDPVRLRQILINLVNNAVKFTHEGEIVVSVWV-----EWDAAMSS---------- 357
Query: 564 LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH 623
+A+ SV P L+ F V DTG GIP +++ +F+ F QV +
Sbjct: 358 ----------PAEAMESV---PCTLR--FSVRDTGVGIPAERRGRLFQAFSQVDSSTTRK 402
Query: 624 QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVC 669
G GLGL I +++ LM G++ + + EPG G F F V AV
Sbjct: 403 YGGSGLGLAIARNLCRLMGGDMWV-ESEPGV-GSTFFFTVRSEAVA 446
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 83/157 (52%), Gaps = 21/157 (13%)
Query: 945 QQVAAQSDGKCSEK-PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVC 1003
+ +A++ D ++ PL+ L+VED+ + KV +L +LG ++ NG EA
Sbjct: 589 RSIASRLDATLGQRRPLS---ILLVEDNPVNQKVALMMLRRLGYTPDLATNGAEA----- 640
Query: 1004 KILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK--EEEQYDVHIPIIALTAHAMA 1061
+ + R+E YD ++MD MP M+G+EA + IR+ Q ++ A+T +A
Sbjct: 641 -VAAQQRRE-----YDLVLMDLHMPEMDGFEAAQRIRRLPLRRQPLIYAMTAAVTEADLA 694
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETMEK 1098
GV +AGMD + KP++ ++L+ +K +E+
Sbjct: 695 GVR----EAGMDGVIPKPVRVEQLIAGLKEASMRLER 727
>gi|334119823|ref|ZP_08493907.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333457464|gb|EGK86087.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1702
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 150/282 (53%), Gaps = 24/282 (8%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A E A S K+ LA SH++R + ++G+ +L + N + + + ++ +
Sbjct: 1011 QAREAALEASRMKSLFLANMSHEIRTPMNGVMGMTDLLLK-TNLTPEQIDFVQTLKLSGQ 1069
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
+LL I+N ++++SK+EAG+M L EFNL+ + EV+D+ +KG++VV D V
Sbjct: 1070 NLLSIINDILDLSKLEAGEMRLEILEFNLSICMNEVLDLLATPAQEKGIEVVA-LIDTDV 1128
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
++GD +L+QIL NL++N++KFT G + + A ASN +++
Sbjct: 1129 --PLQIKGDAARLRQILTNLINNAIKFTEAGEVVIEVA----------DASNPGLLAAS- 1175
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
N++ + ++ L +E N ++L F+V DTG GI + Q +F+ F QV +
Sbjct: 1176 -----DNQKILEKIEPLK-IENNDSMLLL-FKVTDTGIGIATEDQKKLFQSFTQVDASTT 1228
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V LM G+I + + PG+ G F F V
Sbjct: 1229 RKYGGTGLGLAISKELVELMGGQIGV-ESTPGQ-GSTFWFTV 1268
Score = 73.2 bits (178), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 19/142 (13%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+ L K L+VED I KV L LG +V NG EA V L+K
Sbjct: 1439 RDLASLKILLVEDTPINQKVGLNQLRVLGCAADVANNGAEALSMVA-----LKK------ 1487
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEE------QYDVH--IPIIALTAHAMAGVASKIVD 1069
YD ++MDC+MPV++G+EAT +R E + + H +IA+TA+A+ G K +
Sbjct: 1488 YDIVLMDCQMPVLDGYEATLQLRGLEAADLAAGKMESHQKTVVIAMTANALKGDREKCLA 1547
Query: 1070 AGMDFHLTKPLQKDKLLDVVKS 1091
AGMD +++KP+ +KL V+++
Sbjct: 1548 AGMDDYISKPISIEKLKSVLEN 1569
Score = 47.8 bits (112), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
E L G+K L+ D V KV + G + E NG + K +S
Sbjct: 1287 ETVLAGRKMLIASDKPTVRKVLVRMAVVWGMEVEEVENGWMTIASLYKAVS------LNS 1340
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
PYD +++D ++P M RL + E + LT+ A ++VD+G +L
Sbjct: 1341 PYDIVLVDIQLPEMVAGSLERL--RISEPAMQQTKWVVLTSMTQLAEAKRLVDSGFSGYL 1398
Query: 1077 TKPLQKDKLLD 1087
TKP++ +L D
Sbjct: 1399 TKPVKAHRLFD 1409
>gi|411116397|ref|ZP_11388884.1| signal transduction histidine kinase [Oscillatoriales
cyanobacterium JSC-12]
gi|410712500|gb|EKQ70001.1| signal transduction histidine kinase [Oscillatoriales
cyanobacterium JSC-12]
Length = 870
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 145/288 (50%), Gaps = 34/288 (11%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A E A+ + K+ LA SH++R L I+GL +L + D + + L I +
Sbjct: 376 QAKELADSANYAKSEFLANMSHELRTPLNVILGLTQLLNRDRTLTREHQQYLETISRSGE 435
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC-DGS 500
LLG++N V+EMSKIEAG++ +E FNL LL+ + +M + I K + ++ D
Sbjct: 436 HLLGLINEVLEMSKIEAGRLTYLESTFNLHDLLDGLREMLHLRAISKDIQFKVESSPDLP 495
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+L ++ D KL+QIL NL+ N++KFT +G + +R VK ++ +RN
Sbjct: 496 LL----IKADEGKLRQILLNLLGNAIKFTDQGEVILR--VKSEA------VDSRN----- 538
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+ EG D D N ++ FEV+DTG GI D +F+ F Q +
Sbjct: 539 ------QQLEGEQDED-------NGEAIKILFEVEDTGPGIAPDDLKRLFKPFEQTRSGM 585
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
+ EG GLGL I + VH++ G+I + + RG F F + + V
Sbjct: 586 IA-SEGTGLGLAISRKYVHMLGGDITVHSQLG--RGTVFSFTISVIPV 630
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 18/157 (11%)
Query: 934 GASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCR 993
G S+ S + +A + ++P+ + LV ED+ V +L K+G E
Sbjct: 632 GVSVESQAA----IAGKVVKLAPQQPI--YRILVAEDNPANRLVLMTLLTKVGFDLEEAV 685
Query: 994 NGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVH-IPI 1052
NG+EA + L I MD MP MNG+EATR IR +E + I
Sbjct: 686 NGQEAIELWQTWHPHL-----------IFMDVRMPFMNGYEATRQIRAQEPFNETQRTKI 734
Query: 1053 IALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
IALTA A + + +G D + KP + ++ + +
Sbjct: 735 IALTASAFEEQREEALASGCDDFIRKPFKAQEIFEKI 771
>gi|399017097|ref|ZP_10719297.1| PAS domain S-box [Herbaspirillum sp. CF444]
gi|398104277|gb|EJL94424.1| PAS domain S-box [Herbaspirillum sp. CF444]
Length = 1206
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 138/279 (49%), Gaps = 46/279 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A +AE + KT L+ SH++R + A++GL L + A D + I
Sbjct: 524 ALSRAESATRAKTNFLSNMSHEIRTPMNAVLGLTYLLEKTA-LNADQRNLMQKIIAAGHS 582
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LLGI+N ++++SKIEAG++E+ F L+ +LE VV++ K V++V+ D +
Sbjct: 583 LLGIINDILDVSKIEAGRLEIEHVPFRLSTVLENVVNITAPGIGDKDVELVVGFND---V 639
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
G H+ GD ++L+QIL NL SN++KFT+ G IS+ + V+S+
Sbjct: 640 GIEHLHGDALRLEQILTNLASNAIKFTAHGEISIHVS----------------VVSEVGD 683
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
++ R F V D+G GIP+D+Q IF F Q +
Sbjct: 684 QVMLR------------------------FVVTDSGIGIPEDRQQDIFHAFTQEDTSTTR 719
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
G GLGL I + +V LM+GEI + EPG +G F F
Sbjct: 720 RYGGTGLGLTICRHLVQLMRGEIGVV-SEPG-KGSQFWF 756
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
+ G + LVV+D I +V +L GA+ +G EA D LR+ D
Sbjct: 931 ITGVRVLVVDDSEINREVAKRILEADGAEVIAVADGSEAVDW-------LREHPDG--AD 981
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MPVM+G+ AT IR+ + +P+IAL+A A + AGM+ L+KP
Sbjct: 982 LVLMDIQMPVMDGYTATHEIRETLQLR--QLPVIALSAGAFKAQQEAAMTAGMNGFLSKP 1039
Query: 1080 LQKDKLLDVVK 1090
++++ V+
Sbjct: 1040 YNVEQIISTVR 1050
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 946 QVAAQSDGKCSEKPLNGK-KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCK 1004
QVA Q+ GK P+ G LV +D+A V + + +G + + +G++A + K
Sbjct: 761 QVAPQAAGKL---PMEGPFTVLVADDNATARAVLADTVKSMGWQVDTVESGEDA---ISK 814
Query: 1005 ILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVA 1064
+ LR L YD ++D MP M+G EA R IR+ + +I +TAH V
Sbjct: 815 TMVRLRHN---LGYDIFLLDWRMPGMDGLEAARAIREASSSHARSPIVIMVTAHGRDDVM 871
Query: 1065 SKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094
+ +D +TKP+ L + + + +
Sbjct: 872 TSPHAELLDAVITKPVMPSTLYNTILQVRQ 901
>gi|376007484|ref|ZP_09784679.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
gi|375324120|emb|CCE20432.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
Length = 1493
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 132/266 (49%), Gaps = 38/266 (14%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELC--HEDANPGTDLAENLGLIRTCSKDLL 444
AE S K+ LA SH++R + A+IG+ L E D E IRT LL
Sbjct: 725 AEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMELTPEQRDFVET---IRTSGDALL 781
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDGSVL 502
I+N +++ SKIE+GK+EL ++ F L LEE +++ +KG+++ ++DP
Sbjct: 782 TIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRAAEKGLELAYIIDPSTPKT- 840
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ GD +L+Q+L NLVSN++KFTSEG + + K+D+ S+ +
Sbjct: 841 ----ILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKKDVKKSDDS------- 889
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
D H V +FEV DTG GIP D+ + +F+ F QV +
Sbjct: 890 -----------DFTESHYV--------LQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTR 930
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIA 648
G GLGL I Q + LM G++ +A
Sbjct: 931 EYGGTGLGLAISQRLSQLMNGKMWVA 956
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 15/136 (11%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+P + L+ ED+ KV +L +LG + ++ NG E D + +
Sbjct: 1174 QPHANLRILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALNR-----------QQ 1222
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP----IIALTAHAMAGVASKIVDAGMD 1073
YD I+MD +MP M+G EA++ I P IIA+TA+AM G ++AGMD
Sbjct: 1223 YDVILMDVQMPEMDGLEASKHICAAYSDGSDMGPRKPRIIAMTANAMQGDREMCLNAGMD 1282
Query: 1074 FHLTKPLQKDKLLDVV 1089
++TKP++++ L + +
Sbjct: 1283 DYITKPVRREALAEAL 1298
>gi|119485730|ref|ZP_01620005.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
gi|119457055|gb|EAW38182.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
Length = 1225
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 151/297 (50%), Gaps = 35/297 (11%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
E A+ ++ K+ LA SH++R L AI+G +L + D++ + + L +I + LL
Sbjct: 736 EAADAANLAKSEFLASMSHELRTPLNAILGFAQLMNYDSSIKVEHHQYLEIISRAGEHLL 795
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGS 504
++N ++EMSKIEAG++ L E++F+L LLE + M KG+ + + D ++
Sbjct: 796 NLINDILEMSKIEAGRVTLTEDDFDLLHLLENLEKMLCLKAQSKGLLLTFE-LDETL--P 852
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
VRGD KL+Q+L NL+ N+ KFT G +++R SF+ +++
Sbjct: 853 QWVRGDEKKLRQVLINLLGNATKFTESGCVTLR------SFR--------------VNQA 892
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
R E +S+ +N + L+ FEV DTG GI +++ +F+ F Q T L
Sbjct: 893 KVRETE--------NSLIKN-DALRIRFEVADTGLGIAENELKRLFQAFSQTT-TGLKSG 942
Query: 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDP 681
EG GLGL I Q V LM GEI + K G F F + ++ + + DP
Sbjct: 943 EGTGLGLSISQQFVQLMGGEITV--KSQVNVGSTFAFEIPMSCTQAQNKYRNYHPDP 997
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 13/128 (10%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+ L+VED + +L ++G + +G+EA + +C D I+
Sbjct: 1008 RSILIVEDQPNNRLLMIKLLSEIGFEVREASSGQEAIE-ICSTWQP----------DLIL 1056
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MD MPVMNG+EAT+ I + IIALTA+ I +AG D + KP Q+
Sbjct: 1057 MDMRMPVMNGFEATQQINAMS--FAKKPIIIALTANTFEAEKQAIFNAGCDDFIGKPFQR 1114
Query: 1083 DKLLDVVK 1090
++LL++++
Sbjct: 1115 EELLEMIR 1122
>gi|411120737|ref|ZP_11393109.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
gi|410709406|gb|EKQ66921.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
Length = 1202
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 139/268 (51%), Gaps = 37/268 (13%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A E AE + K+ LA SH++R L AI+G ++ + + E L +I +
Sbjct: 703 QAKEAAELSNRAKSEFLANMSHELRTPLNAILGFTQVVMRECVSNQVIYEYLEIINRSGE 762
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N V+EMS+IEAGK+ L +F+L LL+ + DM K +D++ C+
Sbjct: 763 HLLNLINDVLEMSRIEAGKVALNISDFDLHYLLKNLEDMLRLKADSKDLDLI---CEIDP 819
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHIS--VRAAVKKKSFKQDIIASNRNVISK 559
+V+GD KL+Q+L N++ N++KFT+EG ++ VR+ V + Q+ ++ + +
Sbjct: 820 DVPQYVQGDEGKLRQVLINILGNAIKFTTEGGVALRVRSQVSQNDNGQE---EDKGTVEE 876
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
+ LF FEV+DTG GI D+ +IFE FVQ +
Sbjct: 877 --TTLF--------------------------FEVEDTGPGIAPDEVETIFEPFVQARRE 908
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
+ H EG GLGL I ++ V LM G+I I
Sbjct: 909 GVLH-EGTGLGLSISRTFVQLMGGDIRI 935
Score = 43.5 bits (101), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+++D L++ + VL K + + NG+EA V + P D I++D
Sbjct: 14 LIIDDIPDNLQLLARVLSKQDYQVRLAANGEEALLDV-----------QLTPPDLILLDI 62
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP M+G++ ++ E+ HIP+I L+ K G +TKP +L
Sbjct: 63 QMPGMDGYQVCEKLKSNEQTR--HIPVIFLSVAQETDDKVKAFAIGAADFVTKPFATQEL 120
Query: 1086 L 1086
L
Sbjct: 121 L 121
>gi|71908962|ref|YP_286549.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase, HAMP region:histidine
kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
gi|71848583|gb|AAZ48079.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase, HAMP region:Histidine
kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
Length = 923
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 136/282 (48%), Gaps = 56/282 (19%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRT 438
A E AE S K+ LA SH++R + ++G+ EL GT+L + +
Sbjct: 259 AKEAAEAGSQAKSEFLATMSHEIRTPMNGVLGMTELLL-----GTELEPTQRQFVEAVER 313
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-PC 497
K LL I+N +++ SKIEAGK+EL +F+L LLEE ++++ +KG+++V D P
Sbjct: 314 SGKHLLHIINDILDFSKIEAGKLELDVVDFDLRNLLEESLELFSQPARRKGLELVADLPP 373
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D ++ VRGD ++L+QI+ NL+ N++KFT G I +R V
Sbjct: 374 DEKLI----VRGDPLRLRQIVTNLLGNAVKFTETGEILLRLLV----------------- 412
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
VE N L+ V DTG GIP D Q IFE F+Q
Sbjct: 413 -----------------------VEPRDNGLKLALVVSDTGIGIPLDAQEKIFEHFLQAD 449
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
+ G GLGL I + +V +M G I + + PG +G F
Sbjct: 450 GSTTRKYGGTGLGLAICRHLVDMMGGRIHV-ESTPG-KGAAF 489
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 25/187 (13%)
Query: 906 KMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKP---LNG 962
K E +S ++ C P P+ + A + + Q + SD + P L G
Sbjct: 608 KAERASLQIAACL-PKPVRQ---------AELLRAIETTLQRRSVSDTAVIDSPARKLRG 657
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+ LV ED+ L V A L ++G + +G++A D + + DL ++
Sbjct: 658 R-VLVAEDNESNLVVARAQLERMGLEVIAASDGQQALDILAEETVDL-----------VL 705
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MDC+MPV++G+ AT +R+ E H+P+IALTA+AM G + DAGMD +L KP
Sbjct: 706 MDCQMPVLDGFAATMALREREAVSGRHLPVIALTANAMKGDRERCKDAGMDEYLAKPYSG 765
Query: 1083 DKLLDVV 1089
++LL ++
Sbjct: 766 EELLTLL 772
>gi|158333826|ref|YP_001514998.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
gi|158304067|gb|ABW25684.1| two-component hybrid sensor and regulator histidine kinase,
putative [Acaryochloris marina MBIC11017]
Length = 653
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 139/287 (48%), Gaps = 38/287 (13%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
K + A E AE ++ K+ LA SH++R L AI+G +L D+ L +I
Sbjct: 167 KLVAAKEMAESANLAKSTFLANMSHELRTPLNAILGFSQLLSRDSTLTAAHLHKLSIINN 226
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
+ LL +LN ++EMSKIEAG++ L FNL LE + +++ K +++
Sbjct: 227 SGEHLLALLNDILEMSKIEAGQITLDPTNFNLHHFLEGLYNLFQQKVFSKKINLKFQ--- 283
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
S +++ D KL+Q+L NL+ N++KFT+EG + ++ A
Sbjct: 284 YSKTVPQYIQADIKKLRQVLINLLGNAIKFTNEGQVYLKVA------------------- 324
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
S+++ LD +SV F V+DTG G+ ++ Q IF F Q +
Sbjct: 325 ---SRIY---------LDDAYSVNLQEPTCLLTFSVEDTGPGVSEEDQEKIFHPFYQTEY 372
Query: 619 TALGHQ--EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
HQ G GLGL I + V+LM GE++I+ + +G F F++
Sbjct: 373 GKQSHQGVHGTGLGLSISRQFVNLMGGELSISSQ--LNKGATFSFSI 417
Score = 48.5 bits (114), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 19/127 (14%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED A + +L +G + +NG+EA + +C+ + P+ I M
Sbjct: 446 RILVVEDHADNRCLLVTLLATIGFLVKSAQNGQEALE-ICQ---------EWHPH-LIWM 494
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIP---IIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D +MP+M+G EAT+ IR + IP IIALTA+A + + G D L KP
Sbjct: 495 DIKMPLMDGLEATQRIRAMPQ-----IPQPVIIALTANAFDEDKERALTCGCDDFLHKPC 549
Query: 1081 QKDKLLD 1087
+ +L+
Sbjct: 550 NETIILE 556
>gi|254421982|ref|ZP_05035700.1| PAS fold family [Synechococcus sp. PCC 7335]
gi|196189471|gb|EDX84435.1| PAS fold family [Synechococcus sp. PCC 7335]
Length = 901
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 141/270 (52%), Gaps = 13/270 (4%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R+ L +I+G + E +NP + AENL +I + LL ++N V+++
Sbjct: 466 KSEFLANMSHELRSPLNSILGFTHILRE-SNPNLEQAENLDIIYRSGEHLLALINDVLDI 524
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIE+G++EL +F+L LL+E+ M+ +KG+ ++ S V D +K
Sbjct: 525 SKIESGRVELNNTQFDLYCLLDELQQMFSSAIDRKGLRFLM---RRSPKLPRTVVSDHLK 581
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
L+QIL NL+SN++KFT+ G I++ S QD N++ ++ E +
Sbjct: 582 LRQILINLLSNALKFTAVGTITLSV----HSQNQD--GQNQHSQNQYGQNQLNHACESLE 635
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
D + P F + DTG GI Q +FE FVQ ++ L EG GLGL I
Sbjct: 636 KQDNPQTTTTKPPSTLLTFSISDTGPGIAAADQAHLFEAFVQT-QSGLDSPEGTGLGLAI 694
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ L+ G + + D + GE G F F+V
Sbjct: 695 SHEYIQLLGGNLTV-DSQLGE-GATFAFSV 722
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 16/128 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D A+ K+ S +L +G + +NG+EA ++ I+M
Sbjct: 755 RILVVDDVAVNRKLLSHLLMNVGFEVREAQNGEEAI-----------ARWESWQPHLILM 803
Query: 1024 DCEMPVMNGWEATRLIRKEEEQ----YDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
D MP+M G EATR I+ E+ Y I+ALTA+A + + G D ++KP
Sbjct: 804 DMRMPIMTGEEATRRIKTLEKTRINPYH-QTRIVALTANAFTEDRTAAIACGCDDFISKP 862
Query: 1080 LQKDKLLD 1087
++ +++ +
Sbjct: 863 IRANEIFE 870
>gi|384171836|ref|YP_005553213.1| two-component sensor kinase [Arcobacter sp. L]
gi|345471446|dbj|BAK72896.1| two-component sensor kinase [Arcobacter sp. L]
Length = 758
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 138/285 (48%), Gaps = 52/285 (18%)
Query: 363 IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED 422
I K +++ IKQ A ++A + K+ LA+ SH++R L AI+G + +
Sbjct: 291 IFKENTQKLLTSEHQIKQ--AMQEATTANKAKSIFLARMSHELRTPLNAILGFTNILQKS 348
Query: 423 ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY 482
N T ENL +I+ + LL I+N ++E+SKIEAGKMEL + FNL +L++E+ D++
Sbjct: 349 MNATTVEKENLNVIKRSADHLLNIINEILELSKIEAGKMELSLKNFNLFELIKEIEDIFA 408
Query: 483 HVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKK 542
KG+ ++ + +++ D +L+QIL NL+ NS+KFT+EG I
Sbjct: 409 FRCENKGLKFKIETLN----LPKYIKADEQRLRQILINLLGNSLKFTNEGEI-------- 456
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
L+ E N L FEV D+G GI
Sbjct: 457 ----------------------------------FLYIYELNKKLF---FEVKDSGIGID 479
Query: 603 KDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
K +F+ F QVK+ Q+G GLGL I + +V LM G I +
Sbjct: 480 KSNLEKVFKPFEQVKQDNYT-QQGTGLGLSITKELVSLMGGNIYL 523
Score = 39.7 bits (91), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 16/160 (10%)
Query: 930 GAEAGASISSHCSSLQQVAAQSDGK--CSEKPLN-GKKFLVVEDDAIVLKVTSAVLGKLG 986
G+E SI+ ++ ++++ +++ K K N K LVV+D + +L G
Sbjct: 530 GSEFYFSINYEKANEEELSKENNAKNIIGIKNENFTKTILVVDDIKENRDLMILLLNSYG 589
Query: 987 AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQY 1046
K +GKEA D E + L D I MD M M+G E + IR +
Sbjct: 590 FKTLEATSGKEALDVF---------ENEKL--DLIFMDILMEGMDGLETMQNIRVSKNGK 638
Query: 1047 DVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
D IPIIAL+A+ + + G + L KP+++ ++L
Sbjct: 639 D--IPIIALSANVFEEDKKEAIKNGANDFLAKPVEEKEIL 676
>gi|94266984|ref|ZP_01290632.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
MLMS-1]
gi|93452318|gb|EAT02952.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
MLMS-1]
Length = 875
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 143/302 (47%), Gaps = 36/302 (11%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A + R S K+ L+ SH++R L IIG L E + + L +I+T
Sbjct: 447 LTANAELNRVSAYKSRFLSAMSHEIRTPLQTIIGFSNLALEGGS--QPPRQYLEMIKTAG 504
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV--DVVLDPCD 498
LL ++N +++++KIE+G++EL E F A+ + + ++ Y ++G+ D +DP
Sbjct: 505 DTLLELINGILDLAKIESGRLELAERCFKPAEFIGKTLEPYAFAARQRGLAFDTSIDP-- 562
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHI--SVRAAVKKKSFKQDIIASNRNV 556
+V G V GD +L Q+L NLV N++KFT EG I SVR A + + A V
Sbjct: 563 -AVPG--EVVGDPARLTQVLVNLVGNALKFTEEGEIVVSVRPAADDADRRPTVGAGRAEV 619
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
S DA + F V D+G GI ++Q IF F Q
Sbjct: 620 APPAAS-------------DATSGL--------LHFTVRDSGSGIAAEQQGRIFTRFAQ- 657
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT 676
E A H G GLGL I S+V LM GEI + + PGE G F F + RER
Sbjct: 658 GEGASPHG-GHGLGLAIAASLVELMGGEIWL-ESRPGE-GSSFHFTIAYRLPPPRERATA 714
Query: 677 DE 678
+E
Sbjct: 715 EE 716
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LV ED+ + + +L G + NG+EA + + + G+ I+MD
Sbjct: 756 ILVAEDNDFNRLLLTDLLQNHGHRVLAASNGREAVE--------IYRSGQC---QLILMD 804
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
MP ++G EATR IR+ E + IPI+ +TA K + AGMD TKP+
Sbjct: 805 MMMPELDGLEATRAIRRLEAEGGSRIPIVGVTAGTQPEELEKCLAAGMDCCFTKPVDIKS 864
Query: 1085 LL 1086
LL
Sbjct: 865 LL 866
>gi|239906417|ref|YP_002953158.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239796283|dbj|BAH75272.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 919
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 139/286 (48%), Gaps = 51/286 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A QAE S K+ LA SH++R L+ IIGL ++ NP ++ ENL LI S+
Sbjct: 416 TARRQAEAASQAKSGFLANMSHEIRTPLSGIIGLTQMTLTQ-NPRPEIRENLELILDSSR 474
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG--VDVVLDPCDG 499
LLGI+N +++ SKIEAGKME V +F+L L+ + + +KG + V +DP
Sbjct: 475 SLLGIVNDILDFSKIEAGKMEFVPVDFDLRDTLDRTMKSFQFSARQKGLTLGVRIDP--- 531
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
V H GD ++ Q++ NLV N++KFT +G + V ++ +
Sbjct: 532 QVPAMVH--GDPDRIMQVVRNLVGNALKFTDQGEVEVTLSLARPG--------------- 574
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
+P L+ V DTG GIP+D+ + +F+ F Q++ T
Sbjct: 575 ------------------------DPMLVS--CSVRDTGIGIPEDRLHELFQVFSQLEST 608
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + +V +M G I + + PG+ G F F V L
Sbjct: 609 RAKRYGGTGLGLAISRRLVEMMGGAIDV-ESVPGQ-GSTFTFTVSL 652
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 14/131 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ + L + G + + +G +A + +C+ P D ++M
Sbjct: 678 RVLLAEDNQVNRLFLKHFLAEAGCQVRLAGSGLQALELLCQE-----------PADLVLM 726
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVH--IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
D +MP M+G EATR IR E E D +P++ALTA++M G + + G+D +++KP+
Sbjct: 727 DIQMPEMDGAEATRRIR-EGEAGDAARAMPVVALTAYSMKGDRERFLSVGLDDYVSKPVD 785
Query: 1082 KDKLLDVVKSI 1092
D+L V++ +
Sbjct: 786 VDELFMVMRRV 796
>gi|302878536|ref|YP_003847100.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302581325|gb|ADL55336.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 872
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 136/282 (48%), Gaps = 54/282 (19%)
Query: 374 CAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENL 433
A L+ +A E A R K+ L+ SH++R L AI+G L D ENL
Sbjct: 398 TADLVLARDAAEAANRA---KSVFLSSMSHELRTPLNAILGFSALMSRDTMLSHIQRENL 454
Query: 434 GLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV 493
+I + LL ++N V+EM+KIEAG+++++ E F+L L+ +V DM +KG+ ++
Sbjct: 455 NIINRSGEHLLSLINDVLEMAKIEAGRVQVLHEAFDLGALVRDVSDMMAVRAQEKGLQLL 514
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
+D ++ GD +L+Q+L NLV N++KFT G I++R +K
Sbjct: 515 VDQSSDF---PRYIMGDEARLRQVLINLVGNAVKFTQHGGITMRFGIK------------ 559
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLL--QFEFEVDDTGKGIPKDKQNSIFE 611
PNLL + EV+D+G GI + Q IF+
Sbjct: 560 -------------------------------PNLLPERLLIEVEDSGIGIKPEDQQRIFD 588
Query: 612 EFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
FVQ+ + L Q+G GLGL I + V LM G I + + PG
Sbjct: 589 AFVQIGD--LSAQKGTGLGLTITRQFVQLMGGVITL-ESTPG 627
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED + S ++ +LG + V NG+ + + DL I M
Sbjct: 668 RILIVEDQLENQLLMSRLMEQLGFEVRVAENGRLGVEIFSRWHPDL-----------IWM 716
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM+G EATRLIR +V I+A+TA A ++++D+GMD + KP + +
Sbjct: 717 DRRMPVMDGIEATRLIRGLPGGREVK--IVAVTASAFMEQRAEMLDSGMDEFVRKPYRFN 774
Query: 1084 KLLD 1087
++ +
Sbjct: 775 EIYE 778
>gi|88797263|ref|ZP_01112853.1| probable sensor/response regulator hybrid [Reinekea blandensis
MED297]
gi|88780132|gb|EAR11317.1| probable sensor/response regulator hybrid [Reinekea sp. MED297]
Length = 656
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 142/287 (49%), Gaps = 52/287 (18%)
Query: 379 KQMNATEQAERKSMN-KTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLI 436
+++ +E R++M K LA SH++R + AIIG++EL HED P L +
Sbjct: 160 QKLKDSEARARQAMEAKATFLANMSHEIRTPMNAIIGMIELLQHED--PNQTQKRYLATL 217
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
R S L+ I++ ++++SKIEAGK+ L ++ F + Q+L + + +Y + +K + ++
Sbjct: 218 RNSSNVLMRIIDDILDVSKIEAGKLSLEKKPFPVRQVLHQCLSVYTQISNRKNI-LLTGR 276
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
D +V ++GD +L+Q+L NL+SN+ KFT +GHI VR ++ +
Sbjct: 277 VDAAV--PIQIQGDSSRLQQVLMNLISNAFKFTDQGHILVRVECTEQKDR---------- 324
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
F V+D+G GI ++ Q S+FE F QV
Sbjct: 325 ---------------------------------LRFSVEDSGVGIAEEAQASLFERFNQV 351
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
++A G GLGL IV+ +V L G++ I + G F F++
Sbjct: 352 DQSASRSSGGTGLGLAIVREIVELWGGDVWIRSR--SGHGATFFFDI 396
Score = 46.6 bits (109), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L V+D+ L V +L +LG +G +A V L+D +D I+M
Sbjct: 536 RVLCVDDNQSNLIVLVGLLKRLGIHAVAVDSGAKA---VETALAD--------DFDLILM 584
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D EMP M+G ATR I ++++ +IAL+AH + AGM L KP++ D
Sbjct: 585 DYEMPGMDGPSATRAILQKKDHL-----VIALSAHTEEFFKQQAQAAGMRGFLRKPIRLD 639
Query: 1084 KL 1085
+
Sbjct: 640 AI 641
>gi|329930043|ref|ZP_08283668.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
gi|328935442|gb|EGG31914.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
Length = 642
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 45/279 (16%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
E AE+ + K+ LA SH++R + +IG+ +L E + E + +I+ LL
Sbjct: 256 EAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILE-TELDEEQQEYVQIIKKSGTTLL 314
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGS 504
I+N +++ SKIE+G+ ELVEE F+L L E ++M + K ++V
Sbjct: 315 NIINDILDFSKIESGRTELVEETFSLRTALSETLNMILPKALDKNIEVTTSVASDV---P 371
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
V GD KL+Q+L NL+SN++KFT G +S+ +C+
Sbjct: 372 NQVYGDVTKLRQVLMNLLSNAIKFTPNGAVSISV--------------------QCVRD- 410
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
+ N L+Q F V DTG G+P +K +FE F QV
Sbjct: 411 -----------------QANSELIQ--FSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQV 451
Query: 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
EG GLGL I + +V LM G+I ++ P ++G F F V
Sbjct: 452 EGTGLGLAICKKLVQLMGGDIWY-ERNPNQQGSVFTFTV 489
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 16/129 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+ ED+ + V ++ KLG NG EA + K PYD + M
Sbjct: 517 KILIAEDNEVNQLVLKKMIEKLGYNSTTVLNGLEAVEAF-----------KRYPYDMVFM 565
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G EA +LI KE D I+A+TAHA+ G K + GMD +++KP+
Sbjct: 566 DIQMPFMDGMEAVQLI-KESAPPDHQPYIVAVTAHAIKGDREKYLGMGMDEYVSKPVS-- 622
Query: 1084 KLLDVVKSI 1092
L+V+ +I
Sbjct: 623 --LNVISAI 629
>gi|170293890|gb|ACB13025.1| putative histidine kinase sensor/regulator [Hydrogenophaga sp.
PL2G6]
Length = 439
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 144/283 (50%), Gaps = 47/283 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++AE + K+ LA SH++R + I+G+ +L E T+ ++ L IR+ +
Sbjct: 45 ALDRAEASTRAKSEFLAMMSHEIRTPMNGILGMAQLL-ETTTLDTEQSDYLDAIRSSGET 103
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL +LN +++ SKIEAG ++L ++F+L + + + +Y + +G + LD + L
Sbjct: 104 LLVLLNDILDFSKIEAGYLDLERQDFDLQEAIFSTLTLYRPMA--EGKSLALDHTFAAGL 161
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ +VRGDR +L+Q+L NL++N++KFTSEG + V D+
Sbjct: 162 PT-YVRGDRTRLRQVLSNLLANAIKFTSEGRVHV-----------DV------------- 196
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
SV R +LL + V+DTG GIP ++ + +F F QV +
Sbjct: 197 -----------------SVRRLADLLMLDVAVEDTGIGIPHNRLDQLFRAFTQVDSSTTR 239
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + M G+I+++ + +G FRF+V L
Sbjct: 240 RYGGTGLGLAISARLCAAMDGDISVSSRVG--KGSIFRFSVAL 280
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
+ ++ LVV+DD I + A+L KLG E G++A V A D
Sbjct: 302 DSRRVLVVDDDRINRALALAMLDKLGFAAESATCGEDAVTRVS-----------AGDVDV 350
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MP M+G + T IR D+ P IIALTA+A + + AGMD + KP
Sbjct: 351 VLMDLQMPGMDGVQTTHFIRG----LDIRQPYIIALTANAYESDRQRCLAAGMDDFMAKP 406
Query: 1080 LQ 1081
+
Sbjct: 407 FR 408
>gi|406889705|gb|EKD35823.1| Hpt sensor hybrid histidine kinase, partial [uncultured bacterium]
Length = 735
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 141/288 (48%), Gaps = 44/288 (15%)
Query: 372 FLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAE 431
F A L K A AER ++ K+ LA SH++R + AI+G +L + NP +D +
Sbjct: 170 FFSAELYK---AKAAAERSAITKSQFLAHMSHEIRTPMNAILGFSDLALQTDNP-SDHFD 225
Query: 432 NLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD 491
LG I T S LLGI+N+++++SKIEAGK+ + +F+L +LLE++ + + G++
Sbjct: 226 YLGKINTASYSLLGIINAILDLSKIEAGKLTVENVDFDLRELLEKLATLISLRCEESGIE 285
Query: 492 VVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIA 551
+ + +RGD ++L Q+L NL++N+ KFT G+I + + +I
Sbjct: 286 FYFNIAPETPFA---LRGDALRLSQVLTNLITNAFKFTESGYIVLHISPDPGR----VIG 338
Query: 552 SNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFE 611
S+R ++ F V DTG GI K+++ ++F+
Sbjct: 339 SDRVIL---------------------------------RFSVQDTGTGITKEQEENLFQ 365
Query: 612 EFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
F Q + G GLGL I +S+V +M G I + + CF
Sbjct: 366 PFTQADSSITRKFGGTGLGLTICKSLVAIMNGSIWLERNDTPGSTFCF 413
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 10/127 (7%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G + L+ ED+ I ++T L G + +NG EA + L +EG + +D
Sbjct: 584 LLGNRVLLAEDNKINQQITLGFLDFAGLATTIVQNGAEAVEL-------LEREGTS--FD 634
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MPVM+G+ AT IRK IPIIALTAHAM K +D GM+ ++TKP
Sbjct: 635 LVLMDIQMPVMDGYSATEAIRKMAAPTG-KIPIIALTAHAMQEEKQKCLDRGMNDYITKP 693
Query: 1080 LQKDKLL 1086
+ ++L
Sbjct: 694 INPEQLF 700
>gi|254412478|ref|ZP_05026252.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196180788|gb|EDX75778.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1082
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 154/288 (53%), Gaps = 36/288 (12%)
Query: 376 ALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL 435
AL + + EQA R K+ L+ SH++R L AIIG +L D++ + +++G+
Sbjct: 590 ALQRAKDTAEQANRA---KSQFLSNMSHELRTPLNAIIGFAQLLGRDSSLTQEHHDHIGI 646
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
I + LL ++N+V+++SK+EAG+++L F+L +L+ + +M+ KG+ +V+D
Sbjct: 647 ICRSGEHLLSLINNVLQLSKVEAGQVKLNCYSFDLYGMLQVLEEMFKLQAENKGLQLVVD 706
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
D ++ +V D KL+Q+L NLV+N++KFTS+G +++R K+ + ++ S R+
Sbjct: 707 -YDEAL--PRYVETDEGKLRQVLINLVNNAIKFTSQGGVTLRV----KAVQGEMGESTRH 759
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
L P + FE++DTG GI ++ S+FE FVQ
Sbjct: 760 PTFNTL-----------------------PIPQKLRFEIEDTGLGIASEEIESLFEAFVQ 796
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
E EG GLGL I Q V LM GEI ++ + +G F F++
Sbjct: 797 T-EAGRKSLEGTGLGLPISQQFVRLMGGEIHVSSR--LNQGSIFTFDI 841
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I MD MPVM+G+EAT+ I+ + Q V ++ALTA A S ++ AG D + KP
Sbjct: 917 IWMDMRMPVMDGYEATKHIKGHLKGQATV---VLALTASAFEEERSLVLSAGCDDFVRKP 973
Query: 1080 LQKDKLLDVV 1089
++D + + +
Sbjct: 974 FREDVIFNKI 983
>gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
Length = 958
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 138/266 (51%), Gaps = 51/266 (19%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLIRTCSK 441
AT +A + S K+ LA SH++R + AI+G EL E+ N + ++L I +
Sbjct: 327 ATAEARQASRMKSEFLANMSHEMRTPMNAILGFTELLLSEETNE--EKRKHLVTIYRSGE 384
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N V+++SKIE+GKM++ EE ++ LL+E+V+ Y + KG+ + D +V
Sbjct: 385 HLLSLINDVLDLSKIESGKMQIYEEIYSPRNLLKELVETYLPMAYSKGLHLAYS-LDNNV 443
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+V GD ++KQIL NLVSN +KFTS+G+I+++A
Sbjct: 444 --PEYVVGDAFRIKQILTNLVSNGIKFTSQGYITIQA----------------------- 478
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
KEG + + V+DTG GIP++K + IFE F Q+ T
Sbjct: 479 -----NYKEG-----------------KITYIVNDTGIGIPEEKLDKIFEPFTQLDRTMS 516
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAI 647
G+GLGL I + +V LM G++ I
Sbjct: 517 RKYGGMGLGLAITKKLVDLMNGKLYI 542
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 77/130 (59%), Gaps = 15/130 (11%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
+ K+ LVVED+ + +L K+G K +V NGKEA + + K Y
Sbjct: 694 FSSKEILVVEDNKANQVLIKKMLEKVGFKVDVAGNGKEALEKI-----------KEKTYS 742
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MD +MPVM+G+ ATR IR++ + +P+IALTAH + G +K ++AG D +L KP
Sbjct: 743 LIIMDMQMPVMDGYTATRKIREK----GLKVPVIALTAHTLRGDEAKSLEAGCDGYLGKP 798
Query: 1080 LQKDKLLDVV 1089
+++ +L+D +
Sbjct: 799 VKQKELIDAI 808
>gi|387154077|ref|YP_005703013.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
gi|311234521|gb|ADP87375.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
Length = 975
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 135/277 (48%), Gaps = 47/277 (16%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLIRTCSKDL 443
++AE S K+ LA SH++R L AIIGL EL E + G + ENL + ++ L
Sbjct: 442 QRAEEASRAKSVFLANMSHEIRTPLNAIIGLTELTLQEPISQG--VGENLRGVLHSAEAL 499
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL------DPC 497
L ++N ++++S++E+G++ L EF+ ++L VV + HV +KG+D L P
Sbjct: 500 LAVVNDLLDLSRVESGRLHLESVEFSPSRLARGVVRLMTHVADRKGLDFELYIARDVPPT 559
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
V GD +L+Q+L NLV N++KFT EG +S+ +
Sbjct: 560 ---------VTGDPARLRQVLLNLVGNALKFTDEGGVSL-------------------TV 591
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+ C+ D N + F V DTG GIP D+Q IFE FVQ
Sbjct: 592 TPCICS---------TDTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQACIFESFVQAD 642
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE 654
E+ G GLGL I + +V +M G + + EPG+
Sbjct: 643 ESTARRFGGTGLGLAISRRLVEMMGGRLEL-RSEPGK 678
>gi|333999085|ref|YP_004531697.1| sensor protein GacS [Treponema primitia ZAS-2]
gi|333740208|gb|AEF85698.1| sensor protein GacS [Treponema primitia ZAS-2]
Length = 1073
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 159/314 (50%), Gaps = 37/314 (11%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAE 431
L L++ A Q++ ++ +K+ LA+ SH++R + AIIG+ EL ED +P T E
Sbjct: 316 LSFILLRITRAKIQSDEENKSKSSFLARMSHEIRTPMNAIIGISELALREDNSPRT--TE 373
Query: 432 NLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD 491
LG IR ++LL I+N +++ SKIE+GK++++ E+ A L+ + + + ++K V
Sbjct: 374 YLGGIRQAGENLLSIINDILDFSKIESGKIDIINAEYMFASLINDCISIIRTRLMEKPV- 432
Query: 492 VVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIA 551
V+L +G L GD +++Q+L NL+SN++K+T EG+I+ +I
Sbjct: 433 VLLTKING--LLPASFIGDESRIRQVLLNLLSNAVKYTHEGYIT-------------LII 477
Query: 552 SNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFE 611
+N N S D + + + + LL FE + DTG GI ++ +F
Sbjct: 478 TNSNTTSNTA------------DGNLIQTANEDTMLLSFE--IADTGIGIKEEDMGKLFG 523
Query: 612 EFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER 671
+F++ + A EG GLGL I +++ LM G+I + K +G F L
Sbjct: 524 DFIRFDQKANQGIEGTGLGLAIARNLCRLMGGDITV--KSTYGKGTA--FTAFLPQRTAN 579
Query: 672 ERPDTDEEDPRTHN 685
P + + +T N
Sbjct: 580 SEPFAEVREAKTKN 593
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 11/126 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D + L V +L K + C +G+EA V K YD + M
Sbjct: 720 RILLVDDVSTNLIVAEGLLTPYQTKVDCCGSGEEAIKFVGK-----------QAYDIVFM 768
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G EAT IR Y ++PIIALTA+A++G+ + G + +L+KP++
Sbjct: 769 DHMMPGMDGLEATAAIRALPLPYVQNMPIIALTANAVSGMKEMFLSKGFNDYLSKPIELT 828
Query: 1084 KLLDVV 1089
KL +++
Sbjct: 829 KLDEIM 834
>gi|428212988|ref|YP_007086132.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428001369|gb|AFY82212.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 932
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 137/283 (48%), Gaps = 50/283 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED--ANPGTDLAENLGLIRTCS 440
A +AE+ S+ K++ LA SH++R + A++G+ L E D E IRT
Sbjct: 269 ARREAEQASIAKSYFLANMSHEIRTPMNAVLGMTGLLLETVLTAEQRDFIET---IRTSG 325
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
LL +++ ++++SK+EAG+M L + +FNLA +EE++D+ K V+V +
Sbjct: 326 DALLTLIDEILDLSKLEAGEMHLEQLDFNLATTVEEIIDLLAPQAHLKSVEVASFIEENL 385
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
LG +RGD +L+QIL NL+ N++KFT EG++ ++
Sbjct: 386 PLG---LRGDSSRLRQILTNLIGNAIKFTEEGYVVLQ----------------------- 419
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+ V NP F V DTG GI Q+ +F+ F QV +
Sbjct: 420 -----------------VERVTENPQETTLLFSVIDTGIGIAAQNQSQLFQPFSQVDSST 462
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I Q +V LM+G+I + +E GE G F F V
Sbjct: 463 TREYGGTGLGLAICQQLVTLMEGKIGLESRE-GE-GSNFWFRV 503
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 18/129 (13%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+ ED+ + KV L LG + ++ G+EA K + Y I+M
Sbjct: 671 KILLAEDNPVNQKVAIKQLELLGYQADIANQGEEAL-----------KLWQTHAYQIILM 719
Query: 1024 DCEMPVMNGWEATRLIRKEEE-------QYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
DC+MPV++G++ T IR+ E+ + H IIA+TAHAM K + AGMD ++
Sbjct: 720 DCQMPVLDGYQVTAQIRRLEQGTGDFPVRNPRHTVIIAMTAHAMKEDREKCLAAGMDDYI 779
Query: 1077 TKPLQKDKL 1085
+KP+ D+L
Sbjct: 780 SKPVCPDQL 788
>gi|182415728|ref|YP_001820794.1| response regulator receiver sensor hybrid histidine kinase
[Opitutus terrae PB90-1]
gi|177842942|gb|ACB77194.1| response regulator receiver sensor hybrid histidine kinase
[Opitutus terrae PB90-1]
Length = 758
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 141/299 (47%), Gaps = 53/299 (17%)
Query: 369 REMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGT 427
R M + L + +A E A+R K+ LA SH++R + ++G+ L NP
Sbjct: 208 RRMLVELDLKRAKDAAEAADRA---KSVFLANMSHEIRTPMNGVLGMANLLLATPLNPEQ 264
Query: 428 -DLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGI 486
DLAE L + LL I+N +++ SKIEAG+MEL +F+LA LE +D++
Sbjct: 265 HDLAETLC---QSGESLLTIINDILDFSKIEAGRMELEAIDFDLADNLELALDLHAEAAA 321
Query: 487 KKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFK 546
+K +++V++ D +V HVRGD +L+QIL NLV N++KFT +G + V+ V
Sbjct: 322 RKHLELVVN-IDPAV--PRHVRGDPGRLRQILLNLVGNAIKFTEKGEVVVKVTVDHNW-- 376
Query: 547 QDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQ 606
PN + F V DTG GIP+ Q
Sbjct: 377 --------------------------------------PNRVLLRFAVTDTGIGIPEWVQ 398
Query: 607 NSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+F+ FVQ + G GLGL I + + LM G I + K P E G F F V L
Sbjct: 399 EKLFQPFVQADTSTTRRFGGSGLGLVICKRLAELMSGSIGVESK-PNE-GSTFWFTVEL 455
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 80/150 (53%), Gaps = 18/150 (12%)
Query: 947 VAAQSDG---KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVC 1003
V A DG K + P + L+ ED+ + KVT L LG +V NG+E
Sbjct: 604 VPALPDGNGVKPAAPPAKEARILIAEDNPVNQKVTLLQLRNLGYPADVVPNGRE------ 657
Query: 1004 KILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP----IIALTAHA 1059
+L LR++ AL ++MD +MP M+G EATR IR+ + D IP IIA+TA+A
Sbjct: 658 -VLEALRRKAYAL----VLMDAQMPEMDGVEATRKIREAQAAGDRTIPSPLRIIAMTANA 712
Query: 1060 MAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
M G + AGMD +L KP++ L D++
Sbjct: 713 MTGDRELCLAAGMDDYLAKPVKPGDLRDML 742
>gi|46580817|ref|YP_011625.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
Hildenborough]
gi|46450237|gb|AAS96885.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
Hildenborough]
Length = 1035
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 135/277 (48%), Gaps = 47/277 (16%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLIRTCSKDL 443
++AE S K+ LA SH++R L AIIGL EL E + G + ENL + ++ L
Sbjct: 502 QRAEEASRAKSVFLANMSHEIRTPLNAIIGLTELTLQEPISQG--VGENLRGVLHSAEAL 559
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL------DPC 497
L ++N ++++S++E+G++ L EF+ ++L VV + HV +KG+D L P
Sbjct: 560 LAVVNDLLDLSRVESGRLHLESVEFSPSRLARGVVRLMTHVADRKGLDFELYIARDVPPT 619
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
V GD +L+Q+L NLV N++KFT EG +S+ +
Sbjct: 620 ---------VTGDPARLRQVLLNLVGNALKFTDEGGVSL-------------------TV 651
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+ C+ D N + F V DTG GIP D+Q IFE FVQ
Sbjct: 652 TPCICS---------TDTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQACIFESFVQAD 702
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE 654
E+ G GLGL I + +V +M G + + EPG+
Sbjct: 703 ESTARRFGGTGLGLAISRRLVEMMGGRLEL-RSEPGK 738
>gi|120601868|ref|YP_966268.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
gi|120562097|gb|ABM27841.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
Length = 1001
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 135/277 (48%), Gaps = 47/277 (16%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLIRTCSKDL 443
++AE S K+ LA SH++R L AIIGL EL E + G + ENL + ++ L
Sbjct: 468 QRAEEASRAKSVFLANMSHEIRTPLNAIIGLTELTLQEPISQG--VGENLRGVLHSAEAL 525
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL------DPC 497
L ++N ++++S++E+G++ L EF+ ++L VV + HV +KG+D L P
Sbjct: 526 LAVVNDLLDLSRVESGRLHLESVEFSPSRLARGVVRLMTHVADRKGLDFELYIARDVPPT 585
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
V GD +L+Q+L NLV N++KFT EG +S+ +
Sbjct: 586 ---------VTGDPARLRQVLLNLVGNALKFTDEGGVSL-------------------TV 617
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+ C+ D N + F V DTG GIP D+Q IFE FVQ
Sbjct: 618 TPCICS---------TDTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQACIFESFVQAD 668
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE 654
E+ G GLGL I + +V +M G + + EPG+
Sbjct: 669 ESTARRFGGTGLGLAISRRLVEMMGGRLEL-RSEPGK 704
>gi|209522722|ref|ZP_03271280.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|209496771|gb|EDZ97068.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
Length = 1493
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 132/266 (49%), Gaps = 38/266 (14%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELC--HEDANPGTDLAENLGLIRTCSKDLL 444
AE S K+ LA SH++R + A+IG+ L E D E IRT LL
Sbjct: 725 AEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMELTPEQRDFVET---IRTSGDALL 781
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDGSVL 502
I+N +++ SKIE+GK+EL ++ F L LEE +++ +KG+++ ++DP
Sbjct: 782 TIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRADEKGLELAYIIDPSTPKT- 840
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ GD +L+Q+L NLVSN++KFTSEG + + K+D+ S+ +
Sbjct: 841 ----ILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKKDVKKSDDS------- 889
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
D H V +FEV DTG GIP D+ + +F+ F QV +
Sbjct: 890 -----------DFTESHYV--------LQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTR 930
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIA 648
G GLGL I Q + LM G++ +A
Sbjct: 931 EYGGTGLGLAISQRLSQLMNGKMWVA 956
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 15/136 (11%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+P + L+ ED+ KV +L +LG + ++ NG E D + +
Sbjct: 1174 QPHANLRILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALNR-----------QQ 1222
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP----IIALTAHAMAGVASKIVDAGMD 1073
YD I+MD +MP M+G EA++ I P IIA+TA+AM G ++AGMD
Sbjct: 1223 YDVILMDVQMPEMDGLEASKHICAAYSDGSDMGPRKPRIIAMTANAMQGDREMCLNAGMD 1282
Query: 1074 FHLTKPLQKDKLLDVV 1089
++TKP++++ L + +
Sbjct: 1283 DYITKPVRREALAEAL 1298
>gi|261405183|ref|YP_003241424.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
gi|261281646|gb|ACX63617.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
Length = 642
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 45/279 (16%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
E AE+ + K+ LA SH++R + +IG+ +L E + E + +I+ LL
Sbjct: 256 EAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILE-TELDEEQREYVQIIKKSGTTLL 314
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGS 504
I+N +++ SKIE+G+ ELVEE F+L L E ++M + K ++V
Sbjct: 315 NIINDILDFSKIESGRTELVEETFSLRTALSETLNMILPKALDKNIEVTTSVASDV---P 371
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
V GD KL+Q+L NL+SN++KFT G +S+ +C+
Sbjct: 372 NQVYGDVTKLRQVLMNLLSNAIKFTPNGAVSISV--------------------QCVRD- 410
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
+ N L+Q F V DTG G+P +K +FE F QV
Sbjct: 411 -----------------QANSKLIQ--FSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQV 451
Query: 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
EG GLGL I + +V LM G+I ++ P ++G F F V
Sbjct: 452 EGTGLGLAICKKLVQLMGGDIWY-ERNPNQQGSVFTFTV 489
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 16/129 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+ ED+ + V ++ KLG NG EA + K PYD + M
Sbjct: 517 KILIAEDNEVNQLVLKKMIEKLGYNSTTVLNGLEAVEAF-----------KRYPYDMVFM 565
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G EA +LI KE D I+A+TAHA+ G K + GMD +++KP+
Sbjct: 566 DIQMPFMDGMEAVQLI-KESAPPDHQPYIVAVTAHAIKGDREKYLGMGMDEYVSKPVS-- 622
Query: 1084 KLLDVVKSI 1092
L+V+ +I
Sbjct: 623 --LNVISAI 629
>gi|119493873|ref|ZP_01624438.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
gi|119452385|gb|EAW33576.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
Length = 1373
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 160/312 (51%), Gaps = 53/312 (16%)
Query: 363 IAKAAKREMFLCAALIKQMNATEQAER-----------KSMNKTFALAKASHDVRASLAA 411
I+K R+ ++ A++K + +QAE + K+ LA SH++R L A
Sbjct: 859 ISKLKMRDGWIFTAILKDITKRKQAEMVLEQAKDAAEAANRAKSEFLANMSHELRTPLNA 918
Query: 412 IIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLA 471
I+G +L + D + ++ +L +I + + LL ++NS++++SKIEAG+M L E F+L
Sbjct: 919 ILGFSQLMNRDPSLTSEQQNSLNIINSSGEHLLTLINSILDLSKIEAGRMILNENSFDLH 978
Query: 472 QLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE 531
LL+ + M + KG+ ++ + D +V ++ D KL+Q+L NL+ N++K+T +
Sbjct: 979 HLLDTLEKMLHLKVETKGLSLLFE-RDENV--PQFIKTDEGKLRQVLINLLGNAIKYTDK 1035
Query: 532 GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFE 591
G +S++ VK++S+ +E++P +
Sbjct: 1036 GGVSLK--VKQQSY----------------------------------PLEKSPETVNLV 1059
Query: 592 FEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651
FEV DTG GI ++ ++IF+ FVQ T Q+G GLGL I + V +M G+I A E
Sbjct: 1060 FEVTDTGTGISSEEISTIFDAFVQTT-TGRKSQQGTGLGLPISRKFVQMMGGDIR-AKSE 1117
Query: 652 PGERGVCFRFNV 663
G G F FN+
Sbjct: 1118 LGT-GTSFEFNL 1128
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D ++ +L +G + + NG+EA + L K D+I M
Sbjct: 1158 RILVVDDQWQNRQLLLQLLISVGFQVKEAENGQEALN--------LWNSWKP---DFIWM 1206
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP+++G+EAT+ IR E + I+ALTA A +++AG D + KP +++
Sbjct: 1207 DMRMPILDGYEATQQIRASSE--GDQVVIVALTASAFEQDRGAVLEAGCDDFVGKPFREE 1264
Query: 1084 KLLD 1087
+ +
Sbjct: 1265 IIFE 1268
>gi|395760464|ref|ZP_10441133.1| PAS/PAC domain-containing protein [Janthinobacterium lividum PAMC
25724]
Length = 1503
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 146/290 (50%), Gaps = 52/290 (17%)
Query: 384 TEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDL 443
T +AE+ S K+ LA SH++R + AI+G+++L + T ++ ++ L
Sbjct: 772 TAEAEQASRAKSEFLANMSHEIRTPMNAILGMLQLLQR-SGLATRQSDYTSKAEAAARAL 830
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEV-VDMYYHVGIKKGVDVVLDPCDGSVL 502
LGILN +++ SK+EAGKM L + FN+ +LL E+ V + ++G +K V+++ + C + +
Sbjct: 831 LGILNDILDFSKVEAGKMALELQPFNIDRLLREIGVILSTNLG-EKPVELIFEQC--ADV 887
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+C V GD ++L+QIL NL N++KFT G I VR AV
Sbjct: 888 PACIV-GDAMRLQQILINLAGNAVKFTDAGEIHVRVAV---------------------- 924
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+E + L EF V DTG GI ++ IF+ F Q +
Sbjct: 925 ------------------LETRGDELVLEFSVRDTGIGIAPEQLERIFDGFAQADASTAR 966
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
G GLGL I + +V +M G++ AD + G G FRF + VC+R+
Sbjct: 967 RYGGSGLGLAISRRLVSMMGGQLE-ADSQRGS-GSTFRFTI----VCQRD 1010
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 11/131 (8%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G + L+VED+AI +V +L GA V +G A V GK YD
Sbjct: 1162 LAGLRLLLVEDNAINQQVARELLCSEGATVVVANDGLAAVAMVT---------GKDDAYD 1212
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MP M+G+ ATR IR+ + ++PIIA+TA+AMA ++ + AGM+ H+ KP
Sbjct: 1213 AVLMDVQMPGMDGYSATRAIRQRADL--ANLPIIAITANAMASDRAEALAAGMNDHVGKP 1270
Query: 1080 LQKDKLLDVVK 1090
Q +L+ V++
Sbjct: 1271 FQLAELVSVIR 1281
>gi|217969772|ref|YP_002355006.1| histidine kinase [Thauera sp. MZ1T]
gi|217507099|gb|ACK54110.1| histidine kinase [Thauera sp. MZ1T]
Length = 596
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 133/289 (46%), Gaps = 51/289 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A E AE S K+ LA SH++R LAAI+G+ L H++ P + E L +I +
Sbjct: 204 RAKENAESVSEAKSSFLASMSHEIRTPLAAILGMSHLMHQEELPASQ-RERLDVIENAGR 262
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDG 499
LL I+N ++++SKIEAGK L E +L ++EE + M H KG+ + D G
Sbjct: 263 HLLSIINGILDLSKIEAGKFTLDEAALDLRGVVEEAMAMLAHQAEAKGLSLRAEFDLPPG 322
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
+ L GD +L+Q L N + N++KFT G I+VR +
Sbjct: 323 TFL------GDATRLRQALVNYLINALKFTERGGITVRCSASAV---------------- 360
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
D DA + F V+DTG GI + +F+ F Q + T
Sbjct: 361 --------------DTDA----------VDVRFVVEDTGPGIAAAELRRLFKPFTQTEAT 396
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
+ G G GLGL I + LM G+ A A+ EPG RG F F L V
Sbjct: 397 STGEHGGTGLGLAITARLAELMGGQ-AGAESEPG-RGSRFWFTTRLRKV 443
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 17/122 (13%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEA--FDHVCKILSDLRKEGKALPY 1018
G L+ +DD + ++ +L + G E +G+EA CK AL
Sbjct: 467 GGACVLLADDDKVNREIARVLLSRGGLAPECAADGEEAAALAERCK---------PAL-- 515
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
I+MD +MPV++G ATR IR ++ + +PIIALTA+A A + ++AGMD LTK
Sbjct: 516 --ILMDMQMPVVDGIAATRRIRTQD--WGREVPIIALTANAFAEDRVRCLEAGMDDFLTK 571
Query: 1079 PL 1080
P+
Sbjct: 572 PI 573
>gi|333998356|ref|YP_004530968.1| putative multi-sensor hybrid histidine kinase [Treponema primitia
ZAS-2]
gi|333740527|gb|AEF86017.1| putative multi-sensor hybrid histidine kinase [Treponema primitia
ZAS-2]
Length = 1516
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 157/309 (50%), Gaps = 51/309 (16%)
Query: 343 MLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQM-NATEQAERKSMNKTFALAKA 401
+ LVL+ A ++++G+ I + AA+R ++ ++ NA QAE+ + +K+ LA
Sbjct: 761 IFLVLIAAAILVAVGMAIFQVKNAAER-----IQMVNELENAMRQAEQANKSKSEFLANM 815
Query: 402 SHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKM 461
SH++R + AIIG+ EL + G + + + I+ +LL I+N +++ SKIEAGK+
Sbjct: 816 SHEIRTPMNAIIGISELVLREETAGR-VKDYINDIKQAGYNLLSIINDILDFSKIEAGKI 874
Query: 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNL 521
+++ + L+ LL +V+ + + I+ ++ + L ++ GD +++QIL NL
Sbjct: 875 QILSAPYRLSSLLNDVITI---IRIRVSEKPIIFMVNVDPLLPDNLTGDEARMRQILLNL 931
Query: 522 VSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSV 581
+SN+ K+T EGHI S
Sbjct: 932 LSNAAKYTKEGHIQFTV-----------------------------------------SG 950
Query: 582 ERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLM 641
ERN LL +FE+ D+G GI K+ +S+F +FV++ EG GLGL I +++ +M
Sbjct: 951 ERNGELLNLKFEIADSGIGIKKEDLDSLFGDFVRLDAERNRGIEGTGLGLAITRNLCLVM 1010
Query: 642 KGEIAIADK 650
G+I ++ +
Sbjct: 1011 GGDIIVSSE 1019
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 11/127 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D L V +L A+ + C NG A V K PYD +++
Sbjct: 1172 RILIVDDITTNLTVAEGLLVPYKAQIDCCLNGLTAVSKV-----------KETPYDLVLL 1220
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + Y +PIIALTA+A++G+ + G + +++KP++
Sbjct: 1221 DHMMPGMDGIETAKAIRALDLAYTKEMPIIALTANALSGMREMFLANGFNDYISKPIEIS 1280
Query: 1084 KLLDVVK 1090
+L DVV+
Sbjct: 1281 QLNDVVE 1287
>gi|359427982|ref|ZP_09219025.1| putative two-component hybrid sensor and regulator [Acinetobacter
sp. NBRC 100985]
gi|358236644|dbj|GAB00564.1| putative two-component hybrid sensor and regulator [Acinetobacter
sp. NBRC 100985]
Length = 936
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 153/356 (42%), Gaps = 73/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + +K+ LA SH++R L +I G + L N + L IR
Sbjct: 273 ITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 332
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K +++
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ HV GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 393 ENI---PQHVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEDDD------------I 437
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 438 GQCL----------------LH------------FSVQDSGIGLSGTDRKRLFESFSQGD 469
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P ++G F F L E +
Sbjct: 470 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQDRAPTDKGSTFWFTALFKVEEEHDFV 529
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
+ H HF Q++ ++A VL+ Y+EN
Sbjct: 530 E-----------------HPHFDHL----------QVVSYLAHPATASVLRSYLEN 558
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDA 972
Q +PN LN+ + A S +Q + Q + + NG+ L V+D
Sbjct: 616 QMSLEPNMLNE---YRARPLYQPLSRRELVQLLGNQPIFEQEPEDFNGQGLHILAVDDHL 672
Query: 973 IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG 1032
L V A+LG+L +G++A D + + R E P+D + MD +MPVM+G
Sbjct: 673 PNLIVLEALLGELNVTTTKALSGQKAIDIIQE-----RIEQNLPPFDLVFMDIQMPVMSG 727
Query: 1033 WEATRLIRKEEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ TR IR E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 728 IDTTRAIRSLESTLDTGMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|359458661|ref|ZP_09247224.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris sp. CCMEE 5410]
Length = 653
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 137/287 (47%), Gaps = 38/287 (13%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
K + A E AE ++ K+ LA SH++R L AI+G +L D+ L +I
Sbjct: 167 KLVAAKEMAESANLAKSTFLANMSHELRTPLNAILGFSQLLSRDSTLTAAHLHKLSIINN 226
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
+ LL +LN ++EMSKIEAG++ L FNL LE + +++ K + +
Sbjct: 227 SGEHLLALLNDILEMSKIEAGQITLDPTNFNLHHFLEGLYNLFQQKVFSKKITLKFQ--- 283
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
S +++ D KL+Q+L NL+ N++KFT+EG + ++ A
Sbjct: 284 YSKTVPQYIQADIKKLRQVLINLLGNAIKFTNEGQVYLKVA------------------- 324
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
S+L+ LD +SV F V+DTG G+ ++ Q IF F Q +
Sbjct: 325 ---SRLY---------LDDAYSVNLQEPTCLLTFSVEDTGPGVSEEDQEKIFHPFYQTEY 372
Query: 619 TALGHQ--EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
HQ G GLGL I + V+LM GE++I + +G F F++
Sbjct: 373 GKQSHQGVHGTGLGLSISRQFVNLMGGELSILSQ--LNKGATFSFSI 417
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 19/127 (14%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED A + +L +G + +NG+EA + VC+ + P+ I M
Sbjct: 446 RILVVEDHADNRCLLVTLLATIGFLVKSAQNGQEALE-VCQ---------EWHPH-LIWM 494
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIP---IIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D +MP+M+G EAT+ IR + IP IIALTA+A + + G D L KP
Sbjct: 495 DIKMPLMDGLEATQQIRAMPQ-----IPQPVIIALTANAFDEDKERALTCGCDDFLHKPC 549
Query: 1081 QKDKLLD 1087
+ +L+
Sbjct: 550 NETIILE 556
>gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37]
gi|119863342|gb|ABM02819.1| amino acid-binding domain sensor hybrid histidine kinase
[Psychromonas ingrahamii 37]
Length = 1574
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 140/278 (50%), Gaps = 52/278 (18%)
Query: 389 RKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLIRTCSKDLLGIL 447
+ +M K+ LA SH++R + AIIGL EL ++D P L + L I + LLGI+
Sbjct: 822 KANMAKSEFLANMSHEIRTPMNAIIGLSELSLNQDMTP--QLRDYLSKIHSSGNSLLGII 879
Query: 448 NSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGSC 505
N +++ SKIEAGK++L EF+L +L+ + + +Y +K ++++ +DP
Sbjct: 880 NGILDFSKIEAGKLDLENIEFSLLDVLDNISNTFYFTLAEKNIELITSIDPD-----VPW 934
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
H+ GD ++ QI NL++N++KFT++G I++ A+ CL
Sbjct: 935 HLVGDPLRTGQIFTNLINNAIKFTNKGQITICAS--------------------CL---- 970
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
E++ ++ F V DTG GIPKD+ S+FE F Q +
Sbjct: 971 ----------------EKDDKQVRLLFSVADTGLGIPKDRIASLFEPFAQADGSTSRKHG 1014
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V M G I I + E G +G F F +
Sbjct: 1015 GTGLGLSICKRLVEEMNGRIWI-ESEQG-KGSVFSFEL 1050
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
+ G K L+V+D+ I +V L G NG+EA + V K+ +D
Sbjct: 1218 IGGAKILLVDDNEINRQVAREFLENAGLLVTTATNGREAVNSV-----------KSHVFD 1266
Query: 1020 YIMMDCEMPVMNGWEATRLIRK-EEEQYDVH-------IPIIALTAHAMAGVASKIVDAG 1071
++MD +MP ++G+EAT+ IR+ E+ + D+ +PIIA+TAHAM G + + AG
Sbjct: 1267 AVLMDVQMPEIDGYEATQKIRRWEKTRVDLQPTDGSPVLPIIAMTAHAMEGDKERCLAAG 1326
Query: 1072 MDFHLTKPLQKDKLLDVV 1089
M+ ++TKP+ +L + +
Sbjct: 1327 MNDYVTKPIDTRQLFEAL 1344
>gi|158339071|ref|YP_001520248.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
gi|158309312|gb|ABW30929.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
Length = 1764
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 136/292 (46%), Gaps = 39/292 (13%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A +AE+ + K+ LA SH++R L AI+G +L D + E L +I +
Sbjct: 1279 TAQRKAEQANRAKSIFLANMSHELRTPLNAILGFSQLISRDPSTPNYQLEQLEIINRSGE 1338
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N V+ MSKIEAG+ L + +L LL+ V +M KKG+ ++ D +
Sbjct: 1339 HLLALINDVLTMSKIEAGRSSLRSQIVDLPLLLDTVENMLGLKAEKKGLKLIF---DRGL 1395
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
++R D KL+Q+L NL+SN++KFT+ GH+ + CL
Sbjct: 1396 TPPHYIRTDPGKLRQVLMNLLSNAIKFTTSGHVQL-----------------------CL 1432
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
EG P LL F V DTG GI ++ +FE F Q ET
Sbjct: 1433 ESNTLDTPEGAG----------VPPLLDVRFTVSDTGSGIAPEELKLLFEPFAQT-ETGR 1481
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
QEG GLGL I + V +M G + +G FN+++ V ++++
Sbjct: 1482 QSQEGTGLGLAISRQFVQIMGGNLTAHSIH--NQGTTLTFNIVVETVLQKKQ 1531
Score = 40.4 bits (93), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED+ ++ +L +G + NG+ A +C+ P+ + M
Sbjct: 1549 RILVVEDNVDSRELLVTLLVTVGFTVKAAENGEVAIA-LCQSWQ---------PH-LVWM 1597
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +PV++G ATRLI+ Q + +IALTA+A + AG D + KP ++
Sbjct: 1598 DLRLPVLDGLSATRLIK----QLETPPVVIALTANAFDEDRDLALQAGCDDFVHKPYREA 1653
Query: 1084 KLLD 1087
+ +
Sbjct: 1654 SIFE 1657
>gi|398335499|ref|ZP_10520204.1| histidine kinase response regulator hybrid protein [Leptospira
kmetyi serovar Malaysia str. Bejo-Iso9]
Length = 830
Score = 124 bits (312), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 150/304 (49%), Gaps = 49/304 (16%)
Query: 360 IILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC 419
IIL+ K ++ LI+ A E AE+ S K+ LA SH++R + ++G+V+L
Sbjct: 414 IILLKKEIQQRRETEWELIQ---AKEVAEKASQVKSSFLANMSHEIRTPMNGVLGMVQLL 470
Query: 420 HEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVD 479
+ E + ++ +K LL I+N +++ SKIEAGK+ L +E F++ +L+E+ D
Sbjct: 471 G-TTKLNEEQKEYIKILSGSAKSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHD 529
Query: 480 MYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAA 539
+ Y + +K +D L +G +V GD+++L+QIL NL N +KFT+ G + ++ +
Sbjct: 530 LLYPLAKRKQIDFKL---EGKFDIQEYVYGDQLRLRQILWNLSGNGIKFTNRGEVVLKVS 586
Query: 540 VKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGK 599
KK S+ N++ EF V DTG
Sbjct: 587 QKK--------ISDENIL--------------------------------IEFTVSDTGI 606
Query: 600 GIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
GIP +KQ +F+ F Q + G GLGL I + +V L G +++ KE +G F
Sbjct: 607 GIPPEKQKQVFDAFSQSDTSTARKFGGSGLGLSITKQLVELQGGVLSLESKEG--KGSRF 664
Query: 660 RFNV 663
F++
Sbjct: 665 SFSI 668
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV ED+ + L KLG V NG E + + + +D ++M
Sbjct: 703 RILVAEDNETNCLLIERALKKLGYDPVVVHNGSEVIERM-----------QLDTFDIVLM 751
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D MP ++G EAT+ IR +++ ++ I IIALTA A+ K V GM+ L KPL
Sbjct: 752 DIHMPEVDGIEATKWIRSQKQNEELPI-IIALTADAIESSKEKYVSKGMNDCLIKPL 807
>gi|390945034|ref|YP_006408795.1| PAS domain-containing protein [Belliella baltica DSM 15883]
gi|390418462|gb|AFL86040.1| PAS domain S-box [Belliella baltica DSM 15883]
Length = 1439
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 150/312 (48%), Gaps = 61/312 (19%)
Query: 365 KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
K A+RE+F A E+AE+ S K+ L+ SH++R + A+IG+ L ED +
Sbjct: 1048 KEAQRELFY---------AKEKAEQASTIKSQFLSIMSHEIRTPMNAVIGMAHLLIED-D 1097
Query: 425 PGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHV 484
P D ENL ++ +++LLG++N +++ +KI++GK+EL + F++ + ++ Y +
Sbjct: 1098 PRPDQLENLKTLQFSAENLLGLINDILDYNKIDSGKIELEKVAFDIDMVFNRIIHSYTYQ 1157
Query: 485 GIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
+K +DV + D + + GD V+L Q+ NL+SN++KFT G + +
Sbjct: 1158 AREKKLDVSFE-LDADL--PKIMTGDPVRLAQVANNLISNAIKFTERGFVKI-------- 1206
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
L K+F + ++ FE +D+G GIP D
Sbjct: 1207 ---------------YLKKVF-----------------EKKDSVKIRFEFEDSGIGIPDD 1234
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
K +IFE F Q G GLGL IV+ +V L G I++ G G F F +
Sbjct: 1235 KIATIFEAFTQASTDTTRKYGGTGLGLAIVKRLVELFGGTISVNRTSIG--GTIFSFEI- 1291
Query: 665 LTAVCERERPDT 676
E ++P+T
Sbjct: 1292 -----EFDKPET 1298
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 12/137 (8%)
Query: 950 QSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRN-GKEAFDHVCKILSD 1008
+ D ++K L+ LV ED+ + + L K G K V N G EA + +
Sbjct: 1304 KEDYVNTQKNLSHASILVAEDNLVNQIMIKKFLNKWGVKEVVMANDGNEAIEAL------ 1357
Query: 1009 LRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV 1068
EGK ++ I++D +MP +G+E R IR +++ +PIIALTA ++ V +I
Sbjct: 1358 ---EGKE--FNLILLDLQMPEKDGYEVGRYIRAHDDEKIRTLPIIALTASSLLEVKDQID 1412
Query: 1069 DAGMDFHLTKPLQKDKL 1085
GM+ ++ KP D L
Sbjct: 1413 AVGMNDYIPKPFNPDNL 1429
>gi|298528196|ref|ZP_07015600.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511848|gb|EFI35750.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1287
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 103/362 (28%), Positives = 163/362 (45%), Gaps = 58/362 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT-- 438
+ A EQAE + K+ LA SH++R + AIIG+ L G D ++ L R
Sbjct: 621 LQAKEQAEAATQAKSEFLANMSHEIRTPMNAIIGISHLA---LRSGLDRRQHSYLTRIDG 677
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDP 496
++ LLGI+N +++ SKIEA K+EL FNL +L + ++ +K + + LDP
Sbjct: 678 AARSLLGIINDILDFSKIEANKLELEHVPFNLKDVLSRLSSIFDFQAEEKQLKLTFQLDP 737
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
++GD ++L Q+L NL+SN++KFTS G I V + + +
Sbjct: 738 D-----TPLSLKGDSMRLSQVLTNLISNAIKFTSHGEIVVSVSPGTSNTAHE-------A 785
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
I +CL +G+ N + F V D+G+G+ +D+ + +F+ F Q
Sbjct: 786 IPECLP------AKGY-------------NQVCLMFSVRDSGQGMDQDQASRLFDAFFQA 826
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT 676
+ G GLGL I + +V +M G I + +PGE G F F V + CE E+ +
Sbjct: 827 DSSITRRFGGTGLGLSISKQLVEMMGGSIQV-QSQPGE-GSTFSFTVHMEKTCELEQHQS 884
Query: 677 DEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKV 736
E R GS KS + +L + R L + L I V
Sbjct: 885 QTESHR------------------GSTRKSLSGRRVLVVEDNRSNRELAYELMTDLGINV 926
Query: 737 TI 738
+
Sbjct: 927 EV 928
Score = 89.7 bits (221), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 36/169 (21%)
Query: 946 QVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKI 1005
Q +S + K L+G++ LVVED+ ++ ++ LG EV +G E F
Sbjct: 883 QSQTESHRGSTRKSLSGRRVLVVEDNRSNRELAYELMTDLGINVEVACDGLEGF------ 936
Query: 1006 LSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYD-----------VH----- 1049
K P+D I+MD +MP M+G+EATR IR + + + +H
Sbjct: 937 -----KRAVQEPFDLILMDIQMPGMDGYEATRRIRSMDHRTEKMGQTSEVAEGIHESFSS 991
Query: 1050 ---------IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
IPIIA+TAHAMAG K ++AGMD HLTKP++ + L +++
Sbjct: 992 LVPEPLNPGIPIIAMTAHAMAGDRDKSLNAGMDDHLTKPIEPEVLKNML 1040
>gi|381160280|ref|ZP_09869512.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380878344|gb|EIC20436.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1306
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 145/297 (48%), Gaps = 56/297 (18%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLI 436
IKQ A E AER + +K+ LA SH++R + A+IGL +L H + + + LG I
Sbjct: 557 IKQ--AQEAAERANRSKSQFLANMSHEIRTPMNAVIGLSDLLLHTPLD--SKQRDYLGKI 612
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
R S+ LLGI+N +++ SKIEAGK+EL + F L LL+++ ++ G++++ +
Sbjct: 613 RNSSRMLLGIINDILDYSKIEAGKLELESQSFRLEDLLDQMRTLFAAAADASGIELIFE- 671
Query: 497 CDGSVLGSCHVR---GDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
L H R GD ++L Q+L NL+SN++KFT G +++
Sbjct: 672 -----LDIHHPRTLEGDALRLAQVLTNLLSNAIKFTERGQVTL----------------- 709
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
++ + LS N E +Q F V DTG GI +Q +F+ F
Sbjct: 710 -SIREQGLS-----NAE-----------------MQLTFAVRDTGIGIEPAQQERLFKAF 746
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
Q + G GLGL I Q ++ M GE+ + + PG+ G F F + L E
Sbjct: 747 SQADSSTTRKYGGTGLGLVISQRLIERMGGELRV-ESRPGQ-GSTFSFTITLPVTTE 801
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 15/128 (11%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+ L+VED+A+ +V A++ K + + NG+EA D V + DL I+
Sbjct: 962 QTVLLVEDNALNQEVACAIMEKTQVRIILAENGREAVDLVSQHKVDL-----------IL 1010
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MD +MPVM+G+EA+R IR + +PI+AL+A M ++ AGM+ HL KP+
Sbjct: 1011 MDLQMPVMDGFEASRRIRP----HFPELPIVALSAAVMEEDRARAQAAGMNDHLAKPIDS 1066
Query: 1083 DKLLDVVK 1090
L+ +K
Sbjct: 1067 HALISTLK 1074
>gi|261251332|ref|ZP_05943906.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891
= ATCC 33934]
gi|417956534|ref|ZP_12599498.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891
= ATCC 33934]
gi|260938205|gb|EEX94193.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891
= ATCC 33934]
gi|342809374|gb|EGU44493.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891
= ATCC 33934]
Length = 639
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 148/287 (51%), Gaps = 50/287 (17%)
Query: 379 KQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN-LGLI 436
+Q+N A E+AE ++ K+ LA SH++R + I+G+ L E+ +P +D+ +N L ++
Sbjct: 223 QQLNSAKEKAEVANIKKSEFLANMSHEIRTPMNGIVGIATLL-EETSP-SDIQKNYLDIL 280
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
+ S LL I+N +++ SKIEAG L E F++ QLL + + Y ++ ++
Sbjct: 281 TSSSSTLLDIINDILDFSKIEAGHFSLSNEPFDICQLLHQQSNEY---SVRAAQKQLMFQ 337
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
C+ + GD+V+LKQ+L NL+ N++KFT +GHI ++
Sbjct: 338 CNIEPNLPNEIEGDQVRLKQVLNNLIGNALKFTQQGHIELK------------------- 378
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
+++LH +E++P+L E+ DTG GI KD +SIFE+F Q
Sbjct: 379 ------------------VNSLH-IEQHPHLY---IEIKDTGIGIDKDNLSSIFEKFQQA 416
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ G GLGL I + +V +M GE+ + E G G F F +
Sbjct: 417 DGSTTRKYGGTGLGLAISKKIVEMMGGELKVT-SEVG-LGSSFYFTI 461
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 12/120 (10%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LVVED + ++ S +L L + NG+EA D +C+ +D I+MDC
Sbjct: 506 LVVEDTRVNQQIISVMLNLLNVNTTIVNNGQEAID-ICQ----------TYQFDAILMDC 554
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
MP+M+G+EATR++R ++ + +PIIA+TA+ M ++GM+ LTKP++ K+
Sbjct: 555 HMPIMDGYEATRMLRSYDD-WRCQVPIIAVTANVMKEHKLLCYESGMNDFLTKPVEPKKI 613
>gi|449108510|ref|ZP_21745152.1| hypothetical protein HMPREF9722_00848 [Treponema denticola ATCC
33520]
gi|448961311|gb|EMB42016.1| hypothetical protein HMPREF9722_00848 [Treponema denticola ATCC
33520]
Length = 676
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 143/304 (47%), Gaps = 46/304 (15%)
Query: 363 IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED 422
I K +E FL A + AE+ + ++ LA SH++R + IIG++EL +E
Sbjct: 120 ITKQKLKERFLIIA-------RQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELINE- 171
Query: 423 ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY 482
N + +E + ++ LL ++N V++ SK+E+G M + FNL +E+ VD+
Sbjct: 172 TNLDEEQSEYTRQVNFSAEVLLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLIS 231
Query: 483 HVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKK 542
KKG+++V+D D + GD +L+Q+L N V N++KFT G++SV
Sbjct: 232 MEAHKKGLEIVVDISDKI---PDFIYGDPARLQQVLLNFVKNAVKFTETGYVSVSV---- 284
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
KL F N D A H FEV DTG G+
Sbjct: 285 --------------------KLVFENNSD-DPYAAKH--------FFILFEVADTGIGVN 315
Query: 603 KDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
++++ IF F Q G GLGL I ++++ +MKG+I I D P RG F F
Sbjct: 316 NEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIITMMKGQIGIKDNIP--RGSVFWFK 373
Query: 663 VLLT 666
+ L
Sbjct: 374 IPLV 377
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G K LVV+D + K+ +L K +G+EA D + +D I
Sbjct: 558 GCKILVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAIDTAS-----------SEHFDII 606
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD +MP +NG+EAT+++R + PIIA TA + + G++ + KP
Sbjct: 607 FMDIQMPGINGYEATQILRGK----GYSRPIIACTAGSQDNERNLCKSMGLNDIIKKPFN 662
Query: 1082 KDKLLDVVK 1090
K +L ++VK
Sbjct: 663 KKQLFEMVK 671
>gi|428213858|ref|YP_007087002.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002239|gb|AFY83082.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1437
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 149/292 (51%), Gaps = 20/292 (6%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHE-DANP-GTDLAENLGLIRTCSKDLLGILNSVM 451
K+ LA SH++R + A+IG+ L + D NP D E +R LL I+N ++
Sbjct: 682 KSEFLATMSHEIRTPMNAVIGMTGLLLDTDLNPEQRDFVET---VRASGDALLTIINDIL 738
Query: 452 EMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDGSVLGSCHVRG 509
+ SKIE+GK++L ++ FNL +E+ +D+ +KGV++ +++P + + G
Sbjct: 739 DFSKIESGKLDLEQQPFNLRSCIEDSLDLLASRAAEKGVELAYLIEPSTPEM-----IIG 793
Query: 510 DRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNK 569
D +++QIL NL+SN++KFT +G + V + +Q A S L N
Sbjct: 794 DVTRVRQILVNLLSNAVKFTEKGEVVVSVSASAIPPQQ---AGGIGTDSLILKDQETTNG 850
Query: 570 EGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629
DL+ S NP L Q +F V DTG GIP ++ N +F+ F QV + G GL
Sbjct: 851 HLHKDLNP-DSSAGNP-LCQIQFTVSDTGIGIPPERMNRLFKSFSQVDSSTTREYGGTGL 908
Query: 630 GLGIVQSMVHLMKGEIAIADKE--PGERGVCFRFNVLLTAVCERERPDTDEE 679
GL I + + LM G + + E G+ F++ + ++V E+ P D E
Sbjct: 909 GLAISKRLSELMGGRMWVVSGEGVGGDPDPAFQWPI-ASSVQEQSSPMPDPE 959
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 17/162 (10%)
Query: 930 GAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKF 989
G G I S L VA +KPL + L+ ED + KV +L +LG +
Sbjct: 1124 GIFGGVPILSRPVHLNAVAIDPQ-MAQQKPL---RILLAEDHLVNQKVALQILHRLGYRA 1179
Query: 990 EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDV- 1048
+V NG E +L L ++ YD ++MD MP M+G ATR I ++ +
Sbjct: 1180 DVAGNGIE-------VLQALDRQH----YDVVLMDVHMPEMDGLAATRQICQDALDGRLS 1228
Query: 1049 HIP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
H P IIA+TA+AM G +DAGMD +++KP++ +L++ +
Sbjct: 1229 HRPRIIAMTANAMQGDRELCLDAGMDDYISKPIRMPELVEAL 1270
>gi|358065507|ref|ZP_09152046.1| hypothetical protein HMPREF9473_04109 [Clostridium hathewayi
WAL-18680]
gi|356696247|gb|EHI57867.1| hypothetical protein HMPREF9473_04109 [Clostridium hathewayi
WAL-18680]
Length = 983
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 161/334 (48%), Gaps = 56/334 (16%)
Query: 330 LGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAER 389
L S+V N L++ ++ ++ + ++++ +F R AA+ ++ E+AE
Sbjct: 552 LSSIVYANPGLAIAVVTVVLMLMLLAVTIFF--------RSRLHAAAMRSEL---ERAEA 600
Query: 390 KSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNS 449
+ K+ L++ SH++R + AI+GLV+L ENL ++ S+ LL ++N
Sbjct: 601 GNRAKSEFLSRMSHEIRTPMNAIMGLVDLTLMTEKLTAAAEENLVKVKASSRYLLSLIND 660
Query: 450 VMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRG 509
V++MS+IE GKME+ +E F++ +L+E+ M + ++ ++ + VRG
Sbjct: 661 VLDMSRIENGKMEMADESFSMTAMLDEIESMLVLEAAGRKLEFRMEKS----IRDDVVRG 716
Query: 510 DRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNK 569
D V+L+Q++ NL+SN+ KFT G ++ + +Q+ A
Sbjct: 717 DAVRLRQVIVNLLSNAFKFTPAGGSVAVEVTEEDAAEQETAA------------------ 758
Query: 570 EGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629
F F V DTG GI ++ Q IF F QV + +G GL
Sbjct: 759 --------------------FTFRVRDTGTGIAQEDQQRIFGSFEQVG-SNYSRSQGTGL 797
Query: 630 GLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
GL I +++V LM GE+ + K PGE G F F V
Sbjct: 798 GLAISRNIVQLMGGELQLKSK-PGE-GSEFYFTV 829
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G + LV ED+ + ++ A+L G + + NG++A L + G +D
Sbjct: 851 LRGIRILVAEDNDLNAEIAIALLETQGIEAQRAENGRKA-------LEAFERSGLG-EFD 902
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MD +MP M+G EA++ IR E + IPIIA+TA+A + +GM + KP
Sbjct: 903 AILMDVQMPQMSGLEASKAIRSLEREDAKTIPIIAMTANAFKEDEQLALASGMTGFVPKP 962
Query: 1080 LQKDKLLD 1087
+ +LL+
Sbjct: 963 IDTQRLLE 970
>gi|428310547|ref|YP_007121524.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252159|gb|AFZ18118.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1113
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 144/291 (49%), Gaps = 37/291 (12%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN 432
L A ++ A E AE + K+ LA SH++R L ++G ++ + D++ ++ E+
Sbjct: 615 LKQAELELQRAKEAAEVANRAKSLFLASMSHELRTPLNIMLGFTQVMNRDSSLTSEQRES 674
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
L +I LL ++N V+++SKIEAG++ L E F+L LL + +M+ KG+ +
Sbjct: 675 LQIINRSGHHLLALINDVLDLSKIEAGRLTLDESSFDLISLLRSLREMFNQKAESKGLQL 734
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
L+ +V D KL+Q+L NL+ N++KFT +G +S++ K + K +
Sbjct: 735 HLEIASDV---PQYVSADPNKLRQVLINLLGNAIKFTQKGSVSLKVKTKNEKEKTE---- 787
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
++ D L L FEV DTG GI ++ NSIF+
Sbjct: 788 ---------------PRKNLDKLACL------------TFEVSDTGVGIDPNEINSIFDA 820
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
FVQ + + EG GLGL I + V LM G+I + GE G FRF +
Sbjct: 821 FVQTQSGKVA-PEGTGLGLAISRKFVRLMGGDITVRST-LGE-GSRFRFEI 868
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 15/124 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV +D A ++ +L LG + + +NG+EA IL + P+ I M
Sbjct: 898 RILVADDQAENRQLLVRLLTPLGLEVQEAKNGEEAV-----ILWQ-----QWQPH-LIWM 946
Query: 1024 DCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MP M+G+EAT+ IR E Q + IIALTAH + + + AG + ++KP Q+
Sbjct: 947 DIRMPQMDGYEATQRIRSSVEGQATI---IIALTAHVSSRDRTLALSAGCNDFISKPFQE 1003
Query: 1083 DKLL 1086
+ L
Sbjct: 1004 ETLF 1007
>gi|357404866|ref|YP_004916790.1| histidine kinase [Methylomicrobium alcaliphilum 20Z]
gi|351717531|emb|CCE23196.1| putative Histidine kinase [Methylomicrobium alcaliphilum 20Z]
Length = 1181
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 139/292 (47%), Gaps = 50/292 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++AER + K LA SH++R + AI+GL L E A GTD + IR +
Sbjct: 527 AKQEAERLASVKGNFLANMSHEIRTPMNAILGLAYLL-EKAELGTDELNLVKKIRIAGRS 585
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LLGI+N +++ SKIE+G++E+ F L+ +L+ + + + V++++ P
Sbjct: 586 LLGIINDILDFSKIESGRLEIEHAPFRLSDVLDNLATLMSSIEYSNKVELIMGPAPE--- 642
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
G +RGD ++L+QIL NL SN++KFT +G +++ S
Sbjct: 643 GIEFLRGDALRLEQILVNLTSNALKFTQQGSVTI-------------------------S 677
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+ K+G D L F V DTG GIP +KQ IF F Q +
Sbjct: 678 VIKLPPKDGRDYL---------------RFSVRDTGMGIPIEKQAEIFNAFSQEDTSTTR 722
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
G GLGL I + +V +M GE+ + E G+ F ++L ER P
Sbjct: 723 RFGGTGLGLSICRYLVQMMGGELGVN----SELGIGSEFWLMLP--IERVEP 768
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
SEK LNG L+V+D I + +L GA + G A ++ DL
Sbjct: 920 SEKRLNGLNLLLVDDSEINRDMARRILEAEGATVYLADEGHAAL-QWLRLNPDL------ 972
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075
D ++MD +MP+M+G+EATR IR E +PI+ALTA A + ++AGM+
Sbjct: 973 --ADVVLMDIQMPLMDGYEATRQIR--EVLGLTLLPIVALTAGAFKNQQAAALNAGMNGF 1028
Query: 1076 LTKPLQKDKLL 1086
+ KP ++L+
Sbjct: 1029 IAKPFDVEELI 1039
>gi|371775823|ref|ZP_09482145.1| putative two-component system sensor protein [Anaerophaga sp. HS1]
Length = 1446
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 142/276 (51%), Gaps = 52/276 (18%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA+ SH++R L AIIG L E N E L I++ S+ LLGI+N +++ SKIE
Sbjct: 797 LARMSHEIRTPLNAIIGWTHLALEKDNTQGQ-TEYLKRIQSSSRSLLGIINDILDFSKIE 855
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQI 517
AG++EL +F+L Q+L+ + DM +K +++V D L GD ++L+Q+
Sbjct: 856 AGRLELEYIDFDLEQVLQNLADMVLFRVNEKNLELVFDIAPDVPLSLV---GDPLRLEQV 912
Query: 518 LCNLVSNSMKFTSEGHISVRAAVKK-KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLD 576
L NLV+N++KFT +G++SV+ VK K K +++
Sbjct: 913 LVNLVNNAVKFTDKGYVSVKIEVKSLKGEKAELL-------------------------- 946
Query: 577 ALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQS 636
F ++DTG G+ ++++N++F+ F Q + G GLGL I +
Sbjct: 947 ---------------FAIEDTGIGLKEEQKNNLFKAFSQADVSTTRKYGGSGLGLAICKR 991
Query: 637 MVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
+ H+M GEI + + E G +G F F TA+ +R+
Sbjct: 992 LTHMMDGEIWV-ESEYG-KGSTFYF----TAIIDRQ 1021
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 12/134 (8%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
++PL + L+VED+ ++T +L +V NG+EA D
Sbjct: 1183 QKRPL---RLLMVEDNETNRQLTVELLSMANITTDVATNGQEALDLA-------NNSNGH 1232
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075
PYD I+MD MP MNG+ ATR +++ E +V P++A+TA A+ V ++ + AGM
Sbjct: 1233 CPYDVILMDIHMPGMNGYTATRRLKRIEGWKEV--PVVAMTAEALGDVEAQCLQAGMAGL 1290
Query: 1076 LTKPLQKDKLLDVV 1089
+ KP+ D L V+
Sbjct: 1291 VGKPIDPDDLFRVI 1304
>gi|404448755|ref|ZP_11013747.1| PAS domain-containing protein [Indibacter alkaliphilus LW1]
gi|403765479|gb|EJZ26357.1| PAS domain-containing protein [Indibacter alkaliphilus LW1]
Length = 1442
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 141/281 (50%), Gaps = 46/281 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+AE+ SM K+ L+ SH++R + A+IG+ L E+ NP D ENL ++ +++
Sbjct: 1060 AKEKAEQASMVKSQFLSIMSHEIRTPMNAVIGMSHLLLEE-NPRPDQMENLKTLQFSAEN 1118
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LLG++N +++ +KI++GK+EL F L ++ ++ Y + +K +D+ D +
Sbjct: 1119 LLGLINDILDYTKIDSGKVELESVAFELKTVVNRIIHSYSYQAREKSLDIQF-VYDERI- 1176
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ GD V+L Q++ NL+SN++KFT +G + + + + S K+
Sbjct: 1177 -PDKILGDPVRLGQVINNLISNAVKFTEKGFVRIGVELLEDSSKK--------------- 1220
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
++ F+ +DTG GIPK+K +SIFE F Q
Sbjct: 1221 -------------------------IKLNFKFEDTGIGIPKEKLDSIFEAFTQASAETTR 1255
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL IV+ +V+L EI +E G G F F +
Sbjct: 1256 KFGGTGLGLAIVKRLVNLFDSEIYALKREGG--GSIFTFAI 1294
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 25/164 (15%)
Query: 932 EAGASISSHCSSLQQVAAQSDGKCSE--KPLNG-------KKFLVVEDDAIVLKVTSAVL 982
E G SI + ++ D SE KP NG LV ED+ + + L
Sbjct: 1284 EGGGSIFTFAIDFDKI----DHNRSEVLKPGNGLSKNLERASILVAEDNLVNQIMIKKFL 1339
Query: 983 GKLG-AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
K G + + +G +A + G+ + +++D +MP ++G+E IR
Sbjct: 1340 KKWGVGEIVIAEDGLQAISEFDR--------GQ---FHLVLLDLQMPHVDGFEVAEHIRN 1388
Query: 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
E P+IALTA ++ V ++ + GMD ++KP D L
Sbjct: 1389 SNEPKKKSTPVIALTASSLIDVKDQLEEVGMDDFISKPFNPDNL 1432
>gi|168010744|ref|XP_001758064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690941|gb|EDQ77306.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 311
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 146/275 (53%), Gaps = 22/275 (8%)
Query: 400 KASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAG 459
+ SH++R +A IIGL+++ + ++A ++ I C+ L+ ILNS ++++K+E+G
Sbjct: 4 RVSHELRTPMACIIGLLDMLLSE-KLLDEIASSVRQIHRCATSLIAILNSALDIAKVESG 62
Query: 460 KMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILC 519
K+ L + EF+L L ++D++ KG+ + L D +V GD ++ Q+
Sbjct: 63 KLVLEKAEFDLEAELTALIDVFSVQCDNKGLFISLQLADNV---PKNVVGDSARVMQVFT 119
Query: 520 NLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALH 579
NL+ NS+KFTS G ISV A +A+ + ++ S++ R+ F LD
Sbjct: 120 NLIGNSIKFTSSGRISVSAR----------LATVEDGVNP--SRVHRRSFSSFS-LDMFT 166
Query: 580 SVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVH 639
+ + ++ FEVDDTG GI + +FE FVQ + G GLGLGIV+S+VH
Sbjct: 167 ELPTSDEVIIL-FEVDDTGPGIEPALRERVFENFVQGDASTTRMHGGTGLGLGIVKSLVH 225
Query: 640 LMKGEIAIADKE-PGERGVCFRFNVLLTAVCERER 673
+M G I I +K PG F+F + + ER
Sbjct: 226 IMGGNIRIVEKAGPGS---VFQFTICFQRSLKPER 257
>gi|42528002|ref|NP_973100.1| sensor histidine kinase/response regulator [Treponema denticola
ATCC 35405]
gi|449111016|ref|ZP_21747615.1| hypothetical protein HMPREF9735_00664 [Treponema denticola ATCC
33521]
gi|449114168|ref|ZP_21750648.1| hypothetical protein HMPREF9721_01166 [Treponema denticola ATCC
35404]
gi|41819047|gb|AAS13019.1| sensor histidine kinase/response regulator [Treponema denticola
ATCC 35405]
gi|448957165|gb|EMB37917.1| hypothetical protein HMPREF9721_01166 [Treponema denticola ATCC
35404]
gi|448959279|gb|EMB40000.1| hypothetical protein HMPREF9735_00664 [Treponema denticola ATCC
33521]
Length = 676
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 143/304 (47%), Gaps = 46/304 (15%)
Query: 363 IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED 422
I K +E FL A + AE+ + ++ LA SH++R + IIG++EL +E
Sbjct: 120 ITKQKLKERFLIIA-------RQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELINE- 171
Query: 423 ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY 482
N + +E + ++ LL ++N V++ SK+E+G M + FNL +E+ VD+
Sbjct: 172 TNLDEEQSEYTRQVNFSAEVLLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLIS 231
Query: 483 HVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKK 542
KKG+++V+D D + GD +L+Q+L N V N++KFT G++SV
Sbjct: 232 MEAHKKGLEIVVDISDKI---PDFIYGDPARLQQVLLNFVKNAVKFTETGYVSVSV---- 284
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
KL F N D A H FEV DTG G+
Sbjct: 285 --------------------KLVFENNSD-DPYAAKH--------FFILFEVADTGIGVN 315
Query: 603 KDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
++++ IF F Q G GLGL I ++++ +MKG+I I D P RG F F
Sbjct: 316 NEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIITMMKGQIGIKDNIP--RGSVFWFK 373
Query: 663 VLLT 666
+ L
Sbjct: 374 IPLV 377
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G K LVV+D + K+ +L K +G+EA D + +D I
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAID-----------TASSEHFDII 606
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD +MP +NG+EAT+++R + PIIA TA + + G++ + KP
Sbjct: 607 FMDIQMPGINGYEATQILRGK----GYSRPIIACTAGSQDNERNLCKSMGLNDIIKKPFN 662
Query: 1082 KDKLLDVVK 1090
K +L ++VK
Sbjct: 663 KKQLFEMVK 671
>gi|449105633|ref|ZP_21742335.1| hypothetical protein HMPREF9729_00600 [Treponema denticola ASLM]
gi|451969936|ref|ZP_21923165.1| hypothetical protein HMPREF9728_02372 [Treponema denticola US-Trep]
gi|448967016|gb|EMB47660.1| hypothetical protein HMPREF9729_00600 [Treponema denticola ASLM]
gi|451701391|gb|EMD55863.1| hypothetical protein HMPREF9728_02372 [Treponema denticola US-Trep]
Length = 676
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 143/304 (47%), Gaps = 46/304 (15%)
Query: 363 IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED 422
I K +E FL A + AE+ + ++ LA SH++R + IIG++EL +E
Sbjct: 120 ITKQKLKERFLIIA-------RQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELINE- 171
Query: 423 ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY 482
N + +E + ++ LL ++N V++ SK+E+G M + FNL +E+ VD+
Sbjct: 172 TNLDEEQSEYTRQVNFSAEVLLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLIS 231
Query: 483 HVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKK 542
KKG+++V+D D + GD +L+Q+L N V N++KFT G++SV
Sbjct: 232 MEAHKKGLEIVVDISDKI---PDFIYGDPARLQQVLLNFVKNAVKFTETGYVSVSV---- 284
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
KL F N D A H FEV DTG G+
Sbjct: 285 --------------------KLVFENNSD-DPYAAKH--------FFILFEVADTGIGVN 315
Query: 603 KDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
++++ IF F Q G GLGL I ++++ +MKG+I I D P RG F F
Sbjct: 316 NEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIITMMKGQIGIKDNIP--RGSVFWFK 373
Query: 663 VLLT 666
+ L
Sbjct: 374 IPLV 377
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G K LVV+D + K+ +L K +G+EA D + +D I
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAID-----------TASSEHFDII 606
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD +MP +NG+EAT+++R + PIIA TA + + G++ + KP
Sbjct: 607 FMDIQMPGINGYEATQILRGKGYSR----PIIACTAGSQDNERNLCKSMGLNDIIKKPFN 662
Query: 1082 KDKLLDVVK 1090
K +L ++VK
Sbjct: 663 KKQLFEMVK 671
>gi|317152269|ref|YP_004120317.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
gi|316942520|gb|ADU61571.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
Length = 922
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 139/288 (48%), Gaps = 48/288 (16%)
Query: 376 ALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL 435
AL+ A EQA R K LA SH+VR L ++G+++L A G LA N+ +
Sbjct: 536 ALVVAKEAAEQANRA---KDEFLANISHEVRTPLNGVMGMLQLIRVSATSGEQLA-NVDI 591
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
S++LL +LN V++ SKIEAGK++L E F+LA L+ + V ++ +KG +VLD
Sbjct: 592 AIQSSRNLLRVLNDVLDFSKIEAGKLDLYNEPFDLAGLMRQCVSLFKQQADEKG--LVLD 649
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
C++ GD +++Q+L NL+ N++KFT G I+
Sbjct: 650 SRIDPSARECYL-GDEGRIRQVLFNLLGNAIKFTMYGSIT-------------------- 688
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
L+A P + F V DTG GIP K + IF+ F Q
Sbjct: 689 -------------------LEAYALAHPEPGCERLFFSVTDTGVGIPDSKVDYIFDSFTQ 729
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
V + +G+GLGL IV+ ++ L+ G + + D E G G FNV
Sbjct: 730 VDSSLSRKYKGVGLGLPIVKRLIRLLGGTL-VVDSEMGA-GTTILFNV 775
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 12/123 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED+ + + + +L LG NG+ K L LR E +D I+M
Sbjct: 801 RVLLVEDERVNMLMARRLLENLGHTVTCAENGE-------KCLQVLRGER----FDVILM 849
Query: 1024 DCEMPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D +MPVMNG E T LIR E+ ++ IPI+ALTAHA + AGM+ +++KP +K
Sbjct: 850 DIQMPVMNGMEVTHLIRNSEDFRHVADIPIVALTAHATRRDREAALKAGMNEYISKPFEK 909
Query: 1083 DKL 1085
+ L
Sbjct: 910 EHL 912
>gi|449124538|ref|ZP_21760857.1| hypothetical protein HMPREF9723_00901 [Treponema denticola OTK]
gi|449129541|ref|ZP_21765771.1| hypothetical protein HMPREF9724_00436 [Treponema denticola SP37]
gi|448942869|gb|EMB23763.1| hypothetical protein HMPREF9723_00901 [Treponema denticola OTK]
gi|448945589|gb|EMB26459.1| hypothetical protein HMPREF9724_00436 [Treponema denticola SP37]
Length = 676
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 143/304 (47%), Gaps = 46/304 (15%)
Query: 363 IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED 422
I K +E FL A + AE+ + ++ LA SH++R + IIG++EL +E
Sbjct: 120 ITKQKLKERFLIIA-------RQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELINE- 171
Query: 423 ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY 482
N + +E + ++ LL ++N V++ SK+E+G M + FNL +E+ VD+
Sbjct: 172 TNLDEEQSEYTRQVNFSAEVLLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLIS 231
Query: 483 HVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKK 542
KKG+++V+D D + GD +L+Q+L N V N++KFT G++SV
Sbjct: 232 MEAHKKGLEIVVDISDKI---PDFIYGDPARLQQVLLNFVKNAVKFTETGYVSVSV---- 284
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
KL F N D A H FEV DTG G+
Sbjct: 285 --------------------KLVFENNSD-DPYAAKH--------FFILFEVADTGIGVN 315
Query: 603 KDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
++++ IF F Q G GLGL I ++++ +MKG+I I D P RG F F
Sbjct: 316 NEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIITMMKGQIGIKDNIP--RGSIFWFK 373
Query: 663 VLLT 666
+ L
Sbjct: 374 IPLV 377
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G K LVV+D + K+ +L K +G+EA D + +D I
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAIDTAS-----------SEHFDII 606
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD +MP +NG+EAT+++R + PIIA TA + + G++ + KP
Sbjct: 607 FMDIQMPGINGYEATQILRGK----GYSRPIIACTAGSQDNERNLCKSMGLNDIIKKPFN 662
Query: 1082 KDKLLDVVK 1090
K +L ++VK
Sbjct: 663 KKQLFEMVK 671
>gi|114321577|ref|YP_743260.1| histidine kinase [Alkalilimnicola ehrlichii MLHE-1]
gi|114227971|gb|ABI57770.1| histidine kinase [Alkalilimnicola ehrlichii MLHE-1]
Length = 629
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 142/316 (44%), Gaps = 52/316 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A + AE + K+ LA SH++R L AI+G L + D E LG + +
Sbjct: 279 QARQSAEEANRAKSVFLANMSHELRTPLNAILGFARLAGQAPQATPDQREQLGFVERNGE 338
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N V++M+KIE+G+ L E +L + LE+ V+ H KG+ + L+ +
Sbjct: 339 HLLSLINDVLDMAKIESGRQTLEEGVVDLPRTLEDAVEALRHRAEGKGLTLTLEVAEDL- 397
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
H+ D KL+QIL NLVSN++K+T G + ++++ R
Sbjct: 398 --PRHILSDGRKLRQILINLVSNAVKYTDAGRV--------------VLSARRQSAEPS- 440
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
G D L LL V DTG+GIP + Q+ +FE FVQ +
Sbjct: 441 --------GGHDGL-----------LLA----VADTGRGIPVEDQDRVFEPFVQSGR--V 475
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDP 681
G EG GLGL I + V LM GEI + G RF V L V P DEE
Sbjct: 476 GTTEGTGLGLPITREFVELMGGEIGLESTS----GEGSRFTVSLPLV-----PAVDEERE 526
Query: 682 RTHNDWPQTGLHQHFA 697
R GL+ +A
Sbjct: 527 RQPAPRRHLGLNYRYA 542
>gi|22298419|ref|NP_681666.1| two-component hybrid sensor and regulator [Thermosynechococcus
elongatus BP-1]
gi|22294598|dbj|BAC08428.1| two-component hybrid sensor and regulator [Thermosynechococcus
elongatus BP-1]
Length = 1035
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 128/273 (46%), Gaps = 39/273 (14%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA-NPGTDLAENLGLIRTCSK 441
A + AE S K+ LA SH++R + AIIGL L + NP E + IR
Sbjct: 483 ARQAAEEASRAKSEFLATMSHEIRTPMNAIIGLTGLLLDTPLNPQQQ--EFVNTIRLSGD 540
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LLG++N +++ SKIE+GK+EL FNL +EEV+D+ ++ V++ D V
Sbjct: 541 ALLGVINDILDFSKIESGKLELESYPFNLRTCVEEVLDLLASRAAEREVELAAH-IDSGV 599
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
C V GD +L+Q+L NL+ N++KFT +G++++ K Q
Sbjct: 600 --PCAVIGDMGRLRQVLVNLIGNAIKFTQKGNVTLYVKAKPMPMSQ-------------- 643
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
E P+ + F + DTG GI N +F+ F QV +
Sbjct: 644 -------------------YEFMPSYYSYLFAIQDTGIGISAAGMNRLFKPFSQVDASTT 684
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE 654
G GLGL I Q +V M G+I + K+ GE
Sbjct: 685 RQYGGTGLGLVICQRLVERMGGQIWVESKKTGE 717
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 12/128 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV ED+ + V +L KLG + ++ NG E D V + PYD I+M
Sbjct: 909 RILVAEDNKVNQMVALRILEKLGYRGDIAANGLEVLDAVQR-----------QPYDVILM 957
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D +MP M+G ATR + + + P IIA+TA+AM +DAGMD +++KP++
Sbjct: 958 DMQMPEMDGITATREVTQLFQGLKKPRPRIIAMTANAMESDRQLCLDAGMDDYVSKPIRL 1017
Query: 1083 DKLLDVVK 1090
++L+ ++
Sbjct: 1018 EELVRALR 1025
>gi|410622728|ref|ZP_11333554.1| autoinducer 2 sensor kinase/phosphatase luxQ [Glaciecola pallidula
DSM 14239 = ACAM 615]
gi|410157716|dbj|GAC28928.1| autoinducer 2 sensor kinase/phosphatase luxQ [Glaciecola pallidula
DSM 14239 = ACAM 615]
Length = 725
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 146/284 (51%), Gaps = 52/284 (18%)
Query: 375 AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN-- 432
A L ++M E+A+ + K+ LA SH++R ++ +IGLV++ +DA ++E+
Sbjct: 318 AQLAEKM--AEKAKAADLQKSAFLANISHEIRTPISGVIGLVDMLLDDAEVNQ-ISEDKR 374
Query: 433 ---LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG 489
LGLI++ S+ LL I+ +++ SKIEAGK+ + + F+L QL+EE+++ + H +K
Sbjct: 375 QYYLGLIKSSSRHLLSIITDILDFSKIEAGKISITNQPFDLLQLVEELINDFKHRAAEKS 434
Query: 490 VDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDI 549
+ LD + V GD +LKQIL NL+ N++KFT G ISVR + KK+ +Q
Sbjct: 435 LK--LDYLSAGMEVGLFV-GDPHRLKQILYNLLGNAIKFTQTGTISVRVRLNKKTQEQ-- 489
Query: 550 IASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSI 609
N++ + DTG GI +DK +
Sbjct: 490 ----ANLVCSVI----------------------------------DTGIGIEQDKLCVL 511
Query: 610 FEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
FE F QV +A +G GLGL I + +V LM G I + D E G
Sbjct: 512 FEPFEQVDSSAKRRAQGTGLGLPISRKLVELMGGSINV-DSEFG 554
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 13/135 (9%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LV ED+ I V +L +L + +G+EA L+ L E Y++I+MDC
Sbjct: 597 LVAEDNDINQLVIQNLLAQLNITCTLANDGEEA-------LAQLDGEAAGF-YNFILMDC 648
Query: 1026 EMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK-- 1082
+MP ++G+E TRLIR++++ V +IPIIALTA+AMA K +AGM+ +L+KP+ K
Sbjct: 649 QMPKLDGFETTRLIRQDDKYQQVKNIPIIALTANAMASDKEKCFEAGMNGYLSKPVTKSI 708
Query: 1083 --DKLLDVVKSIDET 1095
DK++++++ +T
Sbjct: 709 LSDKIIELLQDSKDT 723
>gi|428305557|ref|YP_007142382.1| ATP-binding region ATPase domain-containing protein [Crinalium
epipsammum PCC 9333]
gi|428247092|gb|AFZ12872.1| ATP-binding region ATPase domain protein [Crinalium epipsammum PCC
9333]
Length = 2040
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 178/367 (48%), Gaps = 71/367 (19%)
Query: 333 LVSRNNKLSLMLLVLMFIAGVIS---LGLFIILIAKAAKREMFLCAALIKQMNATEQAER 389
++ +N L ++ L I GV + +GL IL A+AA + L AL+ ++ AE+
Sbjct: 1445 IIHQNQLLGILYLENNLITGVFTTERVGLLKILSAQAA---ISLQNALLYRV-----AEQ 1496
Query: 390 KSM-------------NKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGL 435
K++ K+ LA SH++R + AI+G+ +L + P N
Sbjct: 1497 KAILEKAKVAAEAANQAKSEFLAMISHEIRTPMNAIVGMSQLLLNTTLQPQQKAFVNT-- 1554
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV-- 493
I T S+ LL ILN ++++SKIE+GK+EL ++ FNL + +EE + + I+KG+ +
Sbjct: 1555 ISTSSESLLTILNDILDLSKIESGKLELEQQSFNLYRCIEESLALLTPKVIEKGLKLTYS 1614
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
+DP ++ GD +L+Q+L NL+SN++KFT G I++ +K +A
Sbjct: 1615 IDPPTPE-----NLHGDSTRLRQVLLNLLSNAIKFTQTGGINLAVTAEK-------LARE 1662
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
N N ++ + +F + DTG GIP D+ +F F
Sbjct: 1663 TN----------------------------NESVYEIQFAIKDTGIGIPLDRIQQLFNPF 1694
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
QV + G GLGL I + +V +M G+I++ + E G G F F ++ TA +
Sbjct: 1695 TQVDASISRRYGGTGLGLAICKKLVEMMGGKISV-ESELG-HGSTFYFTIIATAASQEFA 1752
Query: 674 PDTDEED 680
T+E +
Sbjct: 1753 LSTEESN 1759
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 19/145 (13%)
Query: 950 QSDGK----CSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKI 1005
+S+GK E PL K L+ ED+ + +V LG + ++ +G EA
Sbjct: 1757 ESNGKIPHLAQEVPL---KILLAEDNKVNQQVALLTFEALGYQIQIVNHGLEA------- 1806
Query: 1006 LSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVAS 1065
L +L+++ YD + MD +MP M+G AT I +E + IIA+TA+
Sbjct: 1807 LQELQQQN----YDVVFMDIQMPEMDGITATSYINQEWSS-ESRPQIIAMTAYVNKEDKE 1861
Query: 1066 KIVDAGMDFHLTKPLQKDKLLDVVK 1090
+ AGMD +++KP++ D+L+ V+K
Sbjct: 1862 RCFQAGMDGYISKPIRIDELVKVLK 1886
>gi|239908130|ref|YP_002954871.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239797996|dbj|BAH76985.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 1233
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 132/258 (51%), Gaps = 44/258 (17%)
Query: 391 SMNKTFALAKASHDVRASLAAIIGLVELCHEDA-NPGTDLAENLGLIRTCSKDLLGILNS 449
S K LA SH++R L A++G V+L D P + L ++ + LL I+N
Sbjct: 721 SQAKGAFLANMSHEIRTPLNAVLGYVQLMLRDRLEPAQR--QRLAVVEESAATLLSIIND 778
Query: 450 VMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG--VDVVLDPCDGSVLGSCHV 507
+++ SKIEAG++E+ E F+LAQ L VV + +KG +D+ LDP + GS V
Sbjct: 779 ILDYSKIEAGRLEIKAESFDLAQCLAAVVKEQEVLAREKGLTLDLQLDP---GLPGS--V 833
Query: 508 RGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFR 567
RGD ++L+QIL NLV+N++K+T G +++RA++ + S C +
Sbjct: 834 RGDGLRLRQILRNLVNNAVKYTEHGSVTLRASLLDR--------------SPCPTG---- 875
Query: 568 NKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGL 627
S ER + F V DTG GIP D+ +IF+ F QV Q G
Sbjct: 876 ------------SGER----VTLRFAVIDTGVGIPADQLPAIFDSFTQVDGGLTKRQAGT 919
Query: 628 GLGLGIVQSMVHLMKGEI 645
GLGL I + + LM GE+
Sbjct: 920 GLGLAICRRLAGLMSGEV 937
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 11/136 (8%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
+P + L+VED+ + + +L G + + NG+ A +++ D+
Sbjct: 975 REPPPSLRVLLVEDNRVNRVFATDLLESRGHEVILAENGRVALEYLVSHAVDV------- 1027
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
++MD +MPVM+G ATR IR D +P++ L+A+AM + + AG D ++
Sbjct: 1028 ----VLMDIQMPVMDGLAATRAIRAGHLDIDPGLPVVGLSAYAMDQERERFLAAGFDDYI 1083
Query: 1077 TKPLQKDKLLDVVKSI 1092
TKP+ + VV +
Sbjct: 1084 TKPIDVETFFAVVARV 1099
>gi|449116753|ref|ZP_21753199.1| hypothetical protein HMPREF9726_01184 [Treponema denticola H-22]
gi|448953008|gb|EMB33804.1| hypothetical protein HMPREF9726_01184 [Treponema denticola H-22]
Length = 676
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 143/303 (47%), Gaps = 46/303 (15%)
Query: 363 IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED 422
I K +E FL A + AE+ + ++ LA SH++R + IIG++EL +E
Sbjct: 120 ITKQKLKERFLIIA-------RQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELINE- 171
Query: 423 ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY 482
N + +E + ++ LL ++N V++ SK+E+G M + FNL +E+ VD+
Sbjct: 172 TNLDEEQSEYTRQVNFSAEVLLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLIS 231
Query: 483 HVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKK 542
KKG+++V+D D + GD +L+Q+L N V N++KFT G++SV
Sbjct: 232 MEAHKKGLEIVVDISDKI---PDFIYGDPARLQQVLLNFVKNAVKFTETGYVSVSV---- 284
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
KL F N D A H FEV DTG G+
Sbjct: 285 --------------------KLVFENNSD-DPYAAKH--------FFILFEVADTGIGVN 315
Query: 603 KDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
++++ IF F Q G GLGL I ++++ +MKG+I I D P RG F F
Sbjct: 316 NEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIITMMKGQIGIKDNIP--RGSVFWFK 373
Query: 663 VLL 665
+ L
Sbjct: 374 IPL 376
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G K LVV+D + K+ +L K +G+EA D + +D I
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAID-----------TASSEHFDII 606
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD +MP +NG+EAT+++R + PIIA TA + + G++ + K
Sbjct: 607 FMDIQMPGINGYEATQILRGKGYSR----PIIACTAGSQDNERNLCKSMGLNDIIKKSFN 662
Query: 1082 KDKLLDVVK 1090
K +L ++VK
Sbjct: 663 KKQLFEMVK 671
>gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
DSM 574]
gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
DSM 574]
Length = 1274
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 146/291 (50%), Gaps = 51/291 (17%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R + I+G E+ + N + E++ +I+ C ++LL ++N ++++
Sbjct: 544 KSEFLANMSHEIRTPMNGILGFAEILLQ-TNLNSQQEESVRIIQQCGENLLDLINDILDL 602
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL----DPCDGSVLGSCHVRG 509
SKIE+GKM L + F+L +L+ E V++ I+KGV++ + D D + +G
Sbjct: 603 SKIESGKMVLEQTTFSLRKLIYEAVNVIEPKLIEKGVEIKISIQKDLPD-------YFKG 655
Query: 510 DRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNK 569
D +++Q+L NL+SN+ KFT EGH+ V+ +K
Sbjct: 656 DPTRIRQVLNNLLSNAAKFTHEGHVEVKVNGQKD-------------------------- 689
Query: 570 EGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629
HSVE + F V DTG GIP++K + IFE F Q + G GL
Sbjct: 690 ---------HSVETDS--FTLVFSVSDTGIGIPREKLDLIFESFTQADGSTTRKYGGTGL 738
Query: 630 GLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
GL I +S+++LM G+I + + RG F F++ V E ++E D
Sbjct: 739 GLTISRSLINLMGGQITV--ESEVNRGSKFSFSIPGLPVVLVENNYSEEND 787
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 956 SEKPLNGKKF---LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKE 1012
S+ P N K L+VED+ ++ +L G + + NG++A + + +
Sbjct: 1043 SDAPDNKNKITNVLLVEDNQFNQRLIQHLLADNGYRVTLAENGQQALEMLNQS------- 1095
Query: 1013 GKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGM 1072
+D ++MD +MPVM+G+E TR+IR +E +PIIALTAHAM G K + AG
Sbjct: 1096 ----NFDIVLMDMQMPVMDGYETTRVIRSDERYKS--LPIIALTAHAMKGDNEKCLAAGC 1149
Query: 1073 DFHLTKPLQKDKLLDVVK 1090
D +L KP+++D L+ +K
Sbjct: 1150 DDYLAKPVKRDILIKTIK 1167
>gi|449104263|ref|ZP_21741003.1| hypothetical protein HMPREF9730_01900 [Treponema denticola AL-2]
gi|448963282|gb|EMB43960.1| hypothetical protein HMPREF9730_01900 [Treponema denticola AL-2]
Length = 676
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 143/304 (47%), Gaps = 46/304 (15%)
Query: 363 IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED 422
I K +E FL A + AE+ + ++ LA SH++R + IIG++EL +E
Sbjct: 120 ITKQKLKERFLIIA-------RQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELINE- 171
Query: 423 ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY 482
N + +E + ++ LL ++N V++ SK+E+G M + FNL +E+ VD+
Sbjct: 172 TNLDEEQSEYTRQVNFSAEVLLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLIS 231
Query: 483 HVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKK 542
KKG+++V+D D + GD +L+Q+L N V N++KFT G++SV
Sbjct: 232 MEAHKKGLEIVVDISDKI---PDFIYGDPARLQQVLLNFVKNAVKFTETGYVSVSV---- 284
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
KL F N D A H FEV DTG G+
Sbjct: 285 --------------------KLVFENNSD-DPYAAKH--------FFILFEVADTGIGVN 315
Query: 603 KDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
++++ IF F Q G GLGL I ++++ +MKG+I I D P RG F F
Sbjct: 316 NEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIITMMKGQIGIKDNIP--RGSVFWFK 373
Query: 663 VLLT 666
+ L
Sbjct: 374 IPLV 377
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G K LVV+D + K+ +L K +G+EA D + +D I
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAID-----------TASSEHFDII 606
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD +MP +NG+EAT+++R + PIIA TA + + G++ + KP
Sbjct: 607 FMDIQMPGINGYEATQILRGKGYSR----PIIACTAGSQDNERNLCKSMGLNDIIKKPFN 662
Query: 1082 KDKLLDVVK 1090
K +L ++VK
Sbjct: 663 KKQLFEMVK 671
>gi|333923713|ref|YP_004497293.1| multi-sensor hybrid histidine kinase [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|333749274|gb|AEF94381.1| multi-sensor hybrid histidine kinase [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 1274
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 146/291 (50%), Gaps = 51/291 (17%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R + I+G E+ + N + E++ +I+ C ++LL ++N ++++
Sbjct: 544 KSEFLANMSHEIRTPMNGILGFAEILLQ-TNLNSQQEESVRIIQQCGENLLDLINDILDL 602
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL----DPCDGSVLGSCHVRG 509
SKIE+GKM L + F+L +L+ E V++ I+KGV++ + D D + +G
Sbjct: 603 SKIESGKMVLEQTTFSLRKLIYEAVNVIEPKLIEKGVEIKISIQKDLPD-------YFKG 655
Query: 510 DRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNK 569
D +++Q+L NL+SN+ KFT EGH+ V+ +K
Sbjct: 656 DPTRIRQVLNNLLSNAAKFTHEGHVEVKVNGQKD-------------------------- 689
Query: 570 EGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629
HSVE + F V DTG GIP++K + IFE F Q + G GL
Sbjct: 690 ---------HSVETDS--FTLVFSVSDTGIGIPREKLDLIFESFTQADGSTTRKYGGTGL 738
Query: 630 GLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
GL I +S+++LM G+I + + RG F F++ V E ++E D
Sbjct: 739 GLTISRSLINLMGGQITV--ESEVNRGSKFSFSIPGLPVVLVENNYSEEND 787
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 956 SEKPLNGKKF---LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKE 1012
S+ P N K L+VED+ ++ +L G + + NG++A + + +
Sbjct: 1043 SDAPDNKNKITNVLLVEDNQFNQRLIQHLLADNGYRVTLAENGQQALEMLNQS------- 1095
Query: 1013 GKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGM 1072
+D ++MD +MPVM+G+E TR+IR +E +PIIALTAHAM G K + AG
Sbjct: 1096 ----NFDIVLMDMQMPVMDGYETTRVIRSDERYKS--LPIIALTAHAMKGDNEKCLAAGC 1149
Query: 1073 DFHLTKPLQKDKLLDVVK 1090
D +L KP+++D L+ +K
Sbjct: 1150 DDYLAKPVKRDILIKTIK 1167
>gi|225375400|ref|ZP_03752621.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM
16841]
gi|225212736|gb|EEG95090.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM
16841]
Length = 954
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 161/317 (50%), Gaps = 48/317 (15%)
Query: 345 LVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQM-NATEQAERKSMNKTFALAKASH 403
L+++FI V S+ LF+I +A ++ A +Q+ A +QA R + K+ LA+ SH
Sbjct: 518 LIVIFILLVASI-LFMIFWQEARRKSYLKIAEKNEQLLEAVDQANRANQAKSDFLARMSH 576
Query: 404 DVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMEL 463
++R + AI+GL E+ + + + L I SK LL I+N +++MS IE KM++
Sbjct: 577 EIRTPMNAIVGLTEIAKHYEDDPKKIEDYLDKIDVSSKVLLNIINDILDMSSIENKKMKI 636
Query: 464 VEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVS 523
+E F+L ++L V +Y +KG +V + D V + ++ GD +++ QIL NLVS
Sbjct: 637 AKEPFDLHEILMSVCTIYEPQCRQKG--IVFEVQDEEVTHT-YLIGDGLRVNQILLNLVS 693
Query: 524 NSMKFTSE-GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVE 582
N+ KFTS G I+++ + +L+ + ++ +
Sbjct: 694 NAYKFTSSGGKITIK-----------------------VKELYVKEEKAY---------- 720
Query: 583 RNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMK 642
F F V+DTG+G+ ++ Q +F+ F Q T G GLGL I ++ V LM
Sbjct: 721 -------FNFLVEDTGEGMSEEMQTRLFQPFEQESATTAQKHGGSGLGLSIAKNFVELMS 773
Query: 643 GEIAIADKEPGERGVCF 659
G I++ K+ GE G F
Sbjct: 774 GSISVKSKK-GE-GTTF 788
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 11/138 (7%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
GKK L+ ED A +V + +L + + NGKEA + L ++ K Y I
Sbjct: 827 GKKVLLAEDTAFNEEVATELLAMVHMDVDCAHNGKEAVE--------LFEKAKPGTYMAI 878
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MD MPVMNG+EA R IRK E + I I A+TA++ S ++AGM+ H+ KP+
Sbjct: 879 LMDIHMPVMNGYEAARTIRKSEREDAGTIAIYAMTANSFEEDVSAALNAGMNGHIAKPID 938
Query: 1082 KDKLLDVVKSIDETMEKQ 1099
L +V +D+ +KQ
Sbjct: 939 AQILYEV---LDKLAKKQ 953
>gi|158425731|ref|YP_001527023.1| multi-sensor hybrid histidine kinase [Azorhizobium caulinodans ORS
571]
gi|158332620|dbj|BAF90105.1| multi-sensor hybrid histidine kinase [Azorhizobium caulinodans ORS
571]
Length = 1121
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 169/359 (47%), Gaps = 83/359 (23%)
Query: 337 NNKLSLMLLVLMFIAGVISLGLFII------LIAKAAKREMFLCAALI--------KQMN 382
L + VLM I GV++ LF++ + + ++R+ L I K
Sbjct: 602 RGTLWTLYFVLMIIVGVVAW-LFVLAQESRRVAQEESQRQTTLLMREIEAHKRTDAKLQK 660
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E AE ++ K+ + SH++R L AI+G +L D + + + ++R S+
Sbjct: 661 AKEVAEAANLAKSRYVVGISHELRTPLNAILGYAQLLERDTSIPAHRRDAIRVVRRSSEH 720
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
L G+++ ++++SKIEAG++ L +E + LL+++VDM+ +G++ +
Sbjct: 721 LSGLIDGLLDISKIEAGRLHLYRDEVRIRDLLDQLVDMFRLQASARGIEFI--------- 771
Query: 503 GSCHVRGDRV---------KLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
H+R +R+ +L+QIL NL+SN++KFT++GH+++R
Sbjct: 772 ---HMRSERLPAVVFTDEKRLRQILINLLSNAIKFTAKGHVALRVT-------------- 814
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
+RN+ EFEV+DTG GI +++ IFE F
Sbjct: 815 ------------YRNQVA-------------------EFEVEDTGIGIAPEERGRIFEPF 843
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
+ + G+GLGL I + + +M GEI++ K ++G F+ +LL+ RE
Sbjct: 844 ERGSRGGAFNAIGIGLGLTITKLLTEIMGGEISL--KSELDKGSTFKVRLLLSEAPGRE 900
>gi|428223164|ref|YP_007107334.1| signal transduction histidine kinase [Synechococcus sp. PCC 7502]
gi|427996504|gb|AFY75199.1| signal transduction histidine kinase [Synechococcus sp. PCC 7502]
Length = 686
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 148/306 (48%), Gaps = 39/306 (12%)
Query: 358 LFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVE 417
L + L K A+R L A + A E+A S KT SH++R L A++G +
Sbjct: 267 LSVSLEQKVAERTQELSLANEQLEQAKEEALTASQAKTAFFTNMSHELRTPLNAVLGFTQ 326
Query: 418 LCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEV 477
L D D+ E + I ++ LL ++NSV+E+S+IEAGK L + F+L LL+ V
Sbjct: 327 LMLYDHTTPPDIREQVNTIYRSAEHLLALINSVLEISRIEAGKETLNCQGFDLQDLLKSV 386
Query: 478 VDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVR 537
++ H +KG+ ++ + L + D +KLKQIL NL++N++KFT+ GHI++R
Sbjct: 387 RELLEHRAKEKGLTLIFELAPDLELT---LYSDEMKLKQILINLLNNAIKFTTAGHITLR 443
Query: 538 AAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDT 597
+SK +D ++ L FEV+DT
Sbjct: 444 -------------------VSK------------YDRQYNQQDQQQETYLY---FEVEDT 469
Query: 598 GKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGV 657
G GI + + +FE F Q + QEG GLGL I +S V+LM G++ + +G
Sbjct: 470 GIGIESENLHRVFEGFFQSQGNGGRSQEGTGLGLAISKSFVNLMGGDLKVTSTVG--KGS 527
Query: 658 CFRFNV 663
F F +
Sbjct: 528 TFSFYI 533
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 73/154 (47%), Gaps = 14/154 (9%)
Query: 941 CSSLQQVAAQSDGKCSEKPL--NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEA 998
C+ +Q + +PL N + L+ ED+ + KV +L LG +V NG E
Sbjct: 541 CTPVQSLEQNLPANTLPQPLSPNSLRILLAEDNIVNQKVMLKMLSYLGYIADVVENGVE- 599
Query: 999 FDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAH 1058
+L L YD I MD +MPVM+G AT I + D + IIALTA+
Sbjct: 600 ------VLEALHHRH----YDLIFMDIQMPVMDGLTATHEIFAQWSPPDRPM-IIALTAN 648
Query: 1059 AMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
AM + AGM +LTKP++ L +++ +
Sbjct: 649 AMQEDREVCLAAGMAEYLTKPIKISLLQEILSKV 682
>gi|345889287|ref|ZP_08840304.1| hypothetical protein HMPREF0178_03078 [Bilophila sp. 4_1_30]
gi|345039772|gb|EGW44081.1| hypothetical protein HMPREF0178_03078 [Bilophila sp. 4_1_30]
Length = 988
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 140/302 (46%), Gaps = 46/302 (15%)
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
L A+ R L A + + + ++A + K+ LA SH++R + IIGL L +
Sbjct: 590 LEAQVQTRTAELAARNAELLKSQQEALEATRAKSEFLATMSHEIRTPMNGIIGLTYLALQ 649
Query: 422 DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481
P +A+ L I +K LL I+N +++ SK+E+GKM+ E FNL+++L+ + M+
Sbjct: 650 RECPAA-IADYLAKIDVTAKTLLRIINDILDFSKVESGKMDFEEIPFNLSEVLDNTLQMF 708
Query: 482 YHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541
H +KG+ + D +G + GD +L QIL NLV N+MKFT EG ++
Sbjct: 709 THAVREKGLSLRFDVGEGV---PQSLVGDPTRLGQILLNLVGNAMKFTHEGSVT------ 759
Query: 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGI 601
LF R VE + + F V DTG GI
Sbjct: 760 ----------------------LFVR------------CVETDQQTVTLGFAVRDTGIGI 785
Query: 602 PKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
P DK S+F+ F+Q + G GLGL I + +V M G I + + +G F F
Sbjct: 786 PADKLPSLFQPFIQADMSVSRRYGGTGLGLAIARVLVQHMGGTIHV--RSVVGKGSTFSF 843
Query: 662 NV 663
+
Sbjct: 844 TL 845
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
PLNG + L+ ED+ I V + +L G +V NG EA D ++ Y
Sbjct: 868 PLNGLRVLLAEDNDINQIVATEILKMKGIAVDVASNGLEAVDM-----------ARSGAY 916
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D I+MD +MP ++G EATR IR + IPIIA+TAH M G A K ++AGM H+ K
Sbjct: 917 DVILMDIQMPELDGIEATRRIRA----FLPDIPIIAMTAHTMKGDAEKCLEAGMQDHIAK 972
Query: 1079 PLQKDKLLDVVK 1090
P+ + L ++
Sbjct: 973 PIDPETLFAALQ 984
>gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
Length = 916
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 138/285 (48%), Gaps = 49/285 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E AE S K+ LA SH++R + I+G+ EL + D +++ +
Sbjct: 258 AKESAEAASKAKSEFLATMSHEIRTPMNGILGMTELLLQ-TQLNRDQQRFAETVQSSGRH 316
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD--PCDGS 500
LLGI+N +++ SKIE+ MEL +F+L QL+E+ + M+ KKG+++ P + +
Sbjct: 317 LLGIINDILDFSKIESDHMELESIDFDLVQLIEDTLAMFAQPADKKGLELAAQFIPPNRA 376
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ VRGD +L+QI NL+SN++KFTS+G + +R + + A +R + C
Sbjct: 377 FM----VRGDSFRLRQIFANLISNAIKFTSQGEVVIRTQLCEA-------AGSRVNLRIC 425
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
V+DTG GIP + IF++F Q +
Sbjct: 426 ---------------------------------VEDTGIGIPPEYHKKIFQQFSQADGST 452
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + ++ LM G I I D PG+ G F+ N+ L
Sbjct: 453 TRQYGGTGLGLTICKKLLELMGGSIHI-DSTPGQ-GTKFQINLEL 495
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 15/120 (12%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+ ED+ + +V A+L +LG + +GK+A D + + YD I+MDC
Sbjct: 663 LLAEDNPVNQEVAKAMLSRLGLNTVIAHDGKQAVDLI-----------RNHHYDIILMDC 711
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MPVM+G+EAT IR Q+ IPIIALTA+A ++ ++AGMD L+KP D+L
Sbjct: 712 QMPVMDGFEATAQIR----QHLNKIPIIALTANATEDDRTQCLNAGMDDFLSKPYTLDQL 767
>gi|407802993|ref|ZP_11149832.1| MmoS protein [Alcanivorax sp. W11-5]
gi|407023153|gb|EKE34901.1| MmoS protein [Alcanivorax sp. W11-5]
Length = 767
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 145/299 (48%), Gaps = 60/299 (20%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRTCSK 441
+AE + K+ LA SH++R + +IG+++L GTDL E L L++ S+
Sbjct: 262 RAESANQAKSEFLATMSHEIRTPMNGVIGILDLL-----AGTDLDERQRHYLQLMQHSSE 316
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
+LL ILN V++ S+IEA ++ L +L L+E+ V + + ++ +++VLD +
Sbjct: 317 NLLTILNDVLDYSRIEAEQLLLEHIPMDLQVLVEDAVSAFSGIARQQALELVLDL---RL 373
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
HVRGD +++Q+L NL++N++KFT GH+ +R
Sbjct: 374 QAMRHVRGDPTRIRQVLLNLINNALKFTPAGHVLIR------------------------ 409
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
V+ +P L + F+V+D+G GI + ++IF+ F Q +
Sbjct: 410 -------------------VQEDPELSRVRFDVEDSGIGIAEQHLDTIFQPFTQADHSTS 450
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER---ERPDTD 677
G GLGL + + +V M+G I IA G G CF F V L E+ RP TD
Sbjct: 451 RRFGGTGLGLALCKRLVQAMQGTI-IAHSRAGH-GSCFSFTVPLEINAEQVSHSRPPTD 507
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 73/119 (61%), Gaps = 10/119 (8%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+ ED+ + V A+LG L + +CRNG+EA ++ R G A +D ++MDC
Sbjct: 632 LIAEDNDVNRDVIEAILGTLRIRPVICRNGEEA-------VAAYRAAGGA--FDLVLMDC 682
Query: 1026 EMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
EMPVM+G+ AT IR EEQ + +P++ALTAH M ++ DAGM L+KP++KD
Sbjct: 683 EMPVMDGYIATAEIRAIEEQAALPPVPVVALTAHVMEPQRQRMRDAGMSHFLSKPVRKD 741
>gi|428773274|ref|YP_007165062.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
gi|428687553|gb|AFZ47413.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
Length = 1352
Score = 123 bits (309), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 142/285 (49%), Gaps = 46/285 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A ++A+ + K+ LA SH++R + +IG+ L D ++ + + IR
Sbjct: 971 LQARKEADLANRAKSEFLAMMSHEIRTPMNGVIGMTNLL-ADTPLNSEQEDFVKTIRHSG 1029
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL I+N +++ SKIE+GK+EL +E FNL + L+ VVD+ K +D+V +
Sbjct: 1030 ESLLVIINDILDFSKIESGKLELEKEPFNLQESLKSVVDLLQFQANSKKLDLVF---NYQ 1086
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
L S + GD +++QIL NLVSN +KFT +G I + ++ S+
Sbjct: 1087 PLQSEYFIGDVTRVRQILLNLVSNGIKFTKQGKIQI------------------DITSQI 1128
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
L++L R +F + DTG GIP+D+QN +F+ F QV +
Sbjct: 1129 LNQLDCR----------------------LKFTIQDTGIGIPQDRQNKLFQPFSQVDNSI 1166
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + +V +M GE+ +E G F F ++L
Sbjct: 1167 TRQYGGTGLGLVISKRLVEMMGGEMWFESRE--NIGSIFYFTLVL 1209
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 19/136 (13%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K+ L+ ED+ + KV L KLG + +V NG E + V K+ YD I+
Sbjct: 1234 KRILLAEDNKVNKKVAVLSLKKLGYQCDVAENGLEVIETVKKV-----------DYDIIL 1282
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD +MP M+G EATR IR H P IIA+TA+AM G + ++AGM+ +LTKP+
Sbjct: 1283 MDIQMPEMDGLEATRWIRDNAS----HQPYIIAMTANAMEGDKNICLEAGMNDYLTKPI- 1337
Query: 1082 KDKLLDVVKSIDETME 1097
+L ++ K+I+++ME
Sbjct: 1338 --RLQELRKTIEKSME 1351
>gi|239625343|ref|ZP_04668374.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519573|gb|EEQ59439.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 946
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 175/375 (46%), Gaps = 65/375 (17%)
Query: 323 LAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMN 382
+ Y S +G L+ N + + +F A V+ + I+ I KA + + L
Sbjct: 510 MGYSSMTMGELIYANP----VAFIAIFSAFVLLSAISILFIMKARLKNAMIQGEL----- 560
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVEL-CHEDANPGTDLAENLGLIRTCSK 441
E+AE +S K L++ SH++R + AI+GL L C E+ P + NL I + S+
Sbjct: 561 --EKAEAQSRAKGEFLSRMSHEIRTPMNAIMGLANLTCMEERLP-ERVETNLKKILSSSQ 617
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N +++MS+IE GKME+++E FNL LL ++ M KG+ +D
Sbjct: 618 YLLSLINDILDMSRIENGKMEIMDESFNLRHLLSDLEGMMRSQAESKGILFTVD------ 671
Query: 502 LGSCH--VRGDRVKLKQILCNLVSNSMKFTSE-GHISVRAAVKKKSFKQDIIASNRNVIS 558
LG H ++GD V+L+Q+L NL+SN++KFT E G +
Sbjct: 672 LGIIHSDIQGDPVRLRQVLVNLLSNAVKFTPENGQV------------------------ 707
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
KL + E D+ A F F V D G GI ++ Q IF+ F Q+
Sbjct: 708 ----KLLVQETES-DETKA-----------AFLFSVKDNGIGIEEEYQKKIFDSFEQIGS 751
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDE 678
++ G GLGL I ++V+ M GE+ + + +G F F+V+ E P
Sbjct: 752 SS-AKSAGTGLGLPISSNIVNAMGGELKV--RSSPHKGAEFYFHVVFQLSASPEDPAPSG 808
Query: 679 EDPRTHNDWPQTGLH 693
+P+T P G+
Sbjct: 809 PEPKTPGAAPLDGVR 823
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 8/132 (6%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
PL+G + L+ ED+ + ++ + +L GA E NG+EA +H A Y
Sbjct: 818 PLDGVRILLAEDNDLNAEIATELLQMNGANVERVSNGQEALEHFTG--------SPAGTY 869
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
I+MD MPVM+G EATR IR + IPIIA+TA++ + V AGM ++K
Sbjct: 870 HVILMDIRMPVMDGLEATRRIRASADPAGSSIPIIAMTANSFKEDSDAAVQAGMTGFVSK 929
Query: 1079 PLQKDKLLDVVK 1090
P+ LLDV++
Sbjct: 930 PVDMAYLLDVLR 941
>gi|220908096|ref|YP_002483407.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
gi|219864707|gb|ACL45046.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
Length = 1099
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 133/268 (49%), Gaps = 52/268 (19%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA SH++R L AI+G +L D T E+L +I + LLG++N V+EMSKIE
Sbjct: 641 LAHMSHELRTPLNAILGFAQLMERDTLLTTAQKESLSIINRSGEHLLGLINDVLEMSKIE 700
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGSCHVRGDRVKLK 515
AG++ L + +F+L +LL+ + +M+ KG+ + L P ++ S D KL+
Sbjct: 701 AGRIVLHKAQFDLHRLLQTLQEMFRVRATAKGLVLTMNLSPSLPQLIIS-----DEGKLR 755
Query: 516 QILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDL 575
Q+L NL+SN++KFT GHI++ A DD
Sbjct: 756 QVLINLLSNAVKFTDVGHITLTANYA-------------------------------DDP 784
Query: 576 DALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQ 635
D P L F+V+DTG+GI +Q+ +FE FVQ T QEG GLGL I
Sbjct: 785 D--------PRLW---FQVEDTGRGIAAAEQHHLFEPFVQTT-TGANAQEGTGLGLTISH 832
Query: 636 SMVHLMKGEIAIADKEPGERGVCFRFNV 663
V L+ GE+ + + RG F F++
Sbjct: 833 QFVQLLGGELRVESEV--NRGSTFSFDL 858
Score = 43.9 bits (102), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D A + +L +G NG EA DL I M
Sbjct: 888 RILVVDDRAENREPLVQLLSSVGFSTRTATNGWEAIAQWQDWQPDL-----------IWM 936
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP ++G+ AT I+ + + IIALTA A +I AG D + KP +D
Sbjct: 937 DMRMPALDGYAATAQIKAQSQ--GAKTIIIALTAAAFEEQQQQIFAAGCDDFVRKPFHED 994
>gi|334120708|ref|ZP_08494786.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333455980|gb|EGK84618.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 2165
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 153/307 (49%), Gaps = 27/307 (8%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E AE S K+ LA SH++R L I+G ++L D N D E+L I C
Sbjct: 1631 AKEAAESASRAKSDFLANMSHELRTPLNGILGYIQLLKVDKNLTPDQQESLNNIHQCGNH 1690
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V+++SKIEA KMEL + A ++ ++D++ +KG+ +
Sbjct: 1691 LLMLINDVLDLSKIEASKMELSLTNVHFASFVKSIIDLFQMRSAQKGIAFNYEQVSALPD 1750
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN--------- 553
G + D +L+Q+L NL+SN++KFT+ G ++ + ++F ++ +N
Sbjct: 1751 G---ILADEKRLRQVLINLLSNAVKFTNRGSVTFKVGY-AENFPENYPQTNCDTCNLTAE 1806
Query: 554 ----------RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPK 603
N+ ++ +S KE + + A ++ +R P + F+++DTG GI +
Sbjct: 1807 IATKTMIHLTANLDAQQMSLPPLETKEAREVITADNTDDRAPT-PKIRFQIEDTGIGIAQ 1865
Query: 604 DKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+K IF F QV + EG GLGL I Q +V +M +I + PG +G F +V
Sbjct: 1866 NKLEEIFLPFHQVGDHN-NFVEGTGLGLSISQKLVKMMGSQIRV-QSTPG-KGSIFWLDV 1922
Query: 664 LLTAVCE 670
L AV +
Sbjct: 1923 DLPAVAQ 1929
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 13/121 (10%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K L+V+D + + +L LG + +G++ L K + LP D I+
Sbjct: 1950 RKVLIVDDHEVNRAMLHRLLFHLGFEIAEATDGEDC----------LHKAQEFLP-DIIL 1998
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MD MPVMNGWEATR +R+ E D I+AL+A+ + + AG D LTKP+Q
Sbjct: 1999 MDLLMPVMNGWEATRRLRQLPELKDT--VILALSANVYETTKQESILAGCDNFLTKPIQT 2056
Query: 1083 D 1083
+
Sbjct: 2057 N 2057
>gi|121603351|ref|YP_980680.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
CJ2]
gi|120592320|gb|ABM35759.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
CJ2]
Length = 1130
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 132/266 (49%), Gaps = 48/266 (18%)
Query: 402 SHDVRASLAAIIGLVELCHEDANPGTDLAEN--LGLIRTCSKDLLGILNSVMEMSKIEAG 459
SH++R L ++G+ L A+ DL + + +R S LLG++N +++ SKIE+G
Sbjct: 481 SHEIRTPLNGVVGMTTLL---ADTPLDLEQRDYVHTMRISSDQLLGVINDILDFSKIESG 537
Query: 460 KMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILC 519
K+EL E NL +EE D+ +KG+++++D D + G VRGD +L+QIL
Sbjct: 538 KLELENEPLNLLATIEEACDIGAPRAREKGLELLVDLGD-ELPG--WVRGDVTRLRQILL 594
Query: 520 NLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALH 579
NLV+N++KFT +G + V A V + F + G
Sbjct: 595 NLVNNAVKFTEKGQVVVSAHVLED---------------------FSPGRGGL------- 626
Query: 580 SVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVH 639
EF + D+G GI D+Q ++F+ FVQV + G GLGL I Q +V
Sbjct: 627 ----------VEFRIKDSGIGIEPDRQAALFQSFVQVDASTTRKYGGTGLGLAICQRLVR 676
Query: 640 LMKGEIAIADKEPGERGVCFRFNVLL 665
LM G+I + + PG+ G F F L
Sbjct: 677 LMGGQIGL-ESAPGD-GSTFWFTARL 700
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 79/157 (50%), Gaps = 14/157 (8%)
Query: 932 EAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDD-AIVLKVTSAVLGKLGAKFE 990
E+ A ++S +Q+VA SE +F++V DD AI LKV A+L KLG +
Sbjct: 828 ESLARVTSAPVEVQKVAR------SEPAAARNQFILVADDNAINLKVALAMLAKLGYEAA 881
Query: 991 VCRNGKEAFDHVCKILSDLRKEGKALPYDY--IMMDCEMPVMNGWEATRLIRKEEEQYDV 1048
NG EA D V + LR P Y I+MD MPVM+G+ +RLI
Sbjct: 882 TAVNGSEAVDRVA---ASLRTGLGETPRQYAAILMDANMPVMDGFVVSRLIISTHGTQ-- 936
Query: 1049 HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
PIIALTA + + + AGM L KPL+ D+L
Sbjct: 937 APPIIALTASVLEEDRQRCLQAGMVGFLPKPLRIDEL 973
>gi|374300938|ref|YP_005052577.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
gi|332553874|gb|EGJ50918.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
Length = 946
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 143/295 (48%), Gaps = 46/295 (15%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A ++AER + K+ LA SH++R + IIGL EL P + + LG+++ +
Sbjct: 558 QAKQEAERANRAKSEFLASMSHEIRTPMNGIIGLTELALMQ-RPKAKVRDYLGMVKQSAD 616
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LLGI+N ++++SKIEAG++EL + F+ ++LE + + +KG+ D V
Sbjct: 617 SLLGIINDILDLSKIEAGRIELEKSFFSPREMLEGLFETMRIEAERKGITFSTK-IDPRV 675
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
S GD +L+QI NL+SN++KFT G +SV+ +
Sbjct: 676 PASLF--GDEGRLRQIFVNLISNALKFTEAGSVSVQVTAE-------------------- 713
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF-VQVKETA 620
D +D P ++ + DTG GIP ++ SIFE F + T
Sbjct: 714 -----------DHMDLA-----KPGPVEIIASIRDTGIGIPANRLESIFEPFDTGTRSTR 757
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPD 675
G G GLGL I + ++ LM G I + + PG +G F F+V+L E+P+
Sbjct: 758 HG---GTGLGLTITKGLIDLMGGRITVKSR-PG-KGSTFSFSVMLELAIPEEKPE 807
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 15/148 (10%)
Query: 946 QVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKI 1005
++AAQ + +PL K L+ ED+ I + +L + G NG++A + + K
Sbjct: 807 EMAAQPAAEPELRPL---KILLAEDNEINRFLALELLKERGHVVTAVENGRDALNMLAKE 863
Query: 1006 LSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE-EQYDVHIPIIALTAHAMAGVA 1064
+D ++MD +MP +NG EATR IR + D IPI+ALTA+A+ G
Sbjct: 864 R-----------FDLVLMDVQMPEVNGVEATRRIRAGKVPGTDPRIPIVALTAYALKGDR 912
Query: 1065 SKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
K + AGMD +L+KP+ ++L V++ I
Sbjct: 913 EKFMSAGMDDYLSKPIDMEELDRVLERI 940
>gi|373457781|ref|ZP_09549548.1| multi-sensor hybrid histidine kinase [Caldithrix abyssi DSM 13497]
gi|371719445|gb|EHO41216.1| multi-sensor hybrid histidine kinase [Caldithrix abyssi DSM 13497]
Length = 1291
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 148/308 (48%), Gaps = 53/308 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
+A QAE + K+ +A SH++R L AIIGL++L + +N E L ++ ++
Sbjct: 884 HAIIQAEASNKAKSEFIANMSHELRTPLNAIIGLIDLMDQ-SNLNETQKEFLQTVKFSAR 942
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
+LL I+N +++ SKIE+GK+EL F+L QL+ + + + + +KG+ L+ D +
Sbjct: 943 ELLKIINQILDFSKIESGKLELEFIPFDLEQLVTHIANAFSIMARQKGLTFKLE-WDKN- 1000
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
HV+GD +L Q+L NL+ N++KFT +G ++++ K +S
Sbjct: 1001 -NPKHVKGDPTRLGQVLINLIGNAIKFTEKGSVTLKVIKKNES----------------- 1042
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
N + F F V DTG GIP+DK + IF F QV +
Sbjct: 1043 -----------------------ENEIDFLFVVQDTGIGIPQDKIDKIFNSFEQVDSSLT 1079
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER---ERPD--- 675
G GLGL I ++ +M +I +A + + G F F + V ++ E PD
Sbjct: 1080 RKFGGTGLGLTITSRLIEMMGSKIKVASQP--DVGTTFEFELTFPKVKDQKVEELPDFSL 1137
Query: 676 -TDEEDPR 682
E PR
Sbjct: 1138 FLTHEQPR 1145
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 47/228 (20%)
Query: 871 CDHVISRPFHG--------SRLIEVLKLLPECKGASQRN----------FPKLKMEASSQ 912
D ++R F G SRLIE++ + K ASQ + FPK+K Q
Sbjct: 1074 VDSSLTRKFGGTGLGLTITSRLIEMMG--SKIKVASQPDVGTTFEFELTFPKVK----DQ 1127
Query: 913 ELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDA 972
+++ D F +SS +++ Q + K E + L+VED+
Sbjct: 1128 KVEELPD------FSLFLTHEQPRLSSEMM-IKESEPQKETKEDEVTI-----LLVEDNV 1175
Query: 973 IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG 1032
I +V ++ +G K EV +G+EA D + K YD +++D +MPV++G
Sbjct: 1176 INQRVAKRMVENMGYKVEVANHGQEALDMM-----------KNKKYDLVLLDVQMPVLDG 1224
Query: 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ IR +E + HIPIIA+TAHA + ++AGMD +L+KP+
Sbjct: 1225 LRTAQKIRVKELNTEEHIPIIAMTAHAQKEDRDRCLEAGMDDYLSKPI 1272
>gi|108805455|ref|YP_645392.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
gi|108766698|gb|ABG05580.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
Length = 1369
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 138/284 (48%), Gaps = 40/284 (14%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A EQAE S K+ +A SH++R + +IG+ EL D + E IR+ +
Sbjct: 621 EAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLL-DTPLTPEQREYARTIRSSGE 679
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDG 499
LL ILN +++ SKIEAG++ L F + + +EEVV + KG++++ ++P
Sbjct: 680 ALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAHAKGLELICFIEPGVP 739
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
+ ++GD +L+Q+L NL+ N++KFT EG + V A++ K+ K+ A R
Sbjct: 740 PL-----IKGDPFRLRQVLTNLIGNAIKFTEEGEVVVSASLSKEEKKKSAPAGERG---- 790
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
++ FEV D+G GI +++Q +FE F Q +
Sbjct: 791 --------------------------GEIELRFEVKDSGIGIQEEQQKHLFEAFSQADAS 824
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V +M GEI + K + G F F+
Sbjct: 825 TTRRYGGTGLGLAISRQLVEMMGGEIGL--KSSPKEGSTFHFSA 866
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 86/146 (58%), Gaps = 11/146 (7%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDL-----RKEGKALP-- 1017
L+ ED+ + +V +++L KLG + E+ +NG+EA + S R+EG P
Sbjct: 1073 ILLAEDNPVNQQVAASMLKKLGYRVELAQNGEEALKKLFPPPSSPPSSSGREEGGGSPKK 1132
Query: 1018 -YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP---IIALTAHAMAGVASKIVDAGMD 1073
Y ++MD +MP M+G EATR IR +EE+ + +P IIA++AHAM + + AGMD
Sbjct: 1133 KYAAVLMDIQMPKMDGLEATRRIRSKEEEGVLRLPRTPIIAMSAHAMQEDRERALKAGMD 1192
Query: 1074 FHLTKPLQKDKLLDVVKSIDETMEKQ 1099
+++KP++K++L + ++ E Q
Sbjct: 1193 HYISKPVKKEQLKEALERFVAATEGQ 1218
>gi|16329398|ref|NP_440126.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|383321139|ref|YP_005381992.1| hybrid sensory kinase Hik12 [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383324309|ref|YP_005385162.1| hybrid sensory kinase Hik12 [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383490193|ref|YP_005407869.1| hybrid sensory kinase Hik12 [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384435459|ref|YP_005650183.1| hybrid sensory kinase Hik12 [Synechocystis sp. PCC 6803]
gi|451813557|ref|YP_007450009.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|1651879|dbj|BAA16806.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|339272491|dbj|BAK48978.1| hybrid sensory kinase Hik12 [Synechocystis sp. PCC 6803]
gi|359270458|dbj|BAL27977.1| hybrid sensory kinase Hik12 [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359273629|dbj|BAL31147.1| hybrid sensory kinase Hik12 [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359276799|dbj|BAL34316.1| hybrid sensory kinase Hik12 [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407957273|dbj|BAM50513.1| hybrid sensory kinase [Bacillus subtilis BEST7613]
gi|451779526|gb|AGF50495.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
Length = 834
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 163/305 (53%), Gaps = 39/305 (12%)
Query: 367 AKREMFLCA---ALIKQMN---ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCH 420
A+RE L +L KQ++ A E AE ++ K+ +A SH++R+ L AIIG +L
Sbjct: 332 AQREKILIEYNESLQKQVDLVRAKEIAESEAKAKSTFVANMSHELRSPLNAIIGFSQLML 391
Query: 421 EDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDM 480
N + EN G+I+ + LL ++N++++ SKIEAGK L F+L LL+++ DM
Sbjct: 392 RTKNLPMEQYENAGIIQRSGEYLLNLINNILDFSKIEAGKTHLNRHNFDLYLLLDDLEDM 451
Query: 481 YYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAV 540
+ +G++++ D + +V GD +KL+QIL NL+SN++KFT+EG +
Sbjct: 452 LHLKAANEGIELIFIR-DHDL--PRYVYGDEIKLRQILLNLLSNAIKFTTEGEV------ 502
Query: 541 KKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKG 600
++ SN FRN E + ++ S E N +F + DTGKG
Sbjct: 503 --------VLTSN------------FRNAEQQEVINPETSTEPK-NKYWLDFTIKDTGKG 541
Query: 601 IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
I + + + +FE F Q E+ QEG GLGL I + + LM G+I ++ ++G F
Sbjct: 542 ISEVELSHLFEAFSQT-ESGRNAQEGTGLGLAITRQFIKLMGGDINVSS--VVDQGTTFS 598
Query: 661 FNVLL 665
F++L+
Sbjct: 599 FSILV 603
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 19/152 (12%)
Query: 936 SISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNG 995
++S +S ++V A + G+ P+ K LVV+D ++ ++ +L G + E NG
Sbjct: 609 TLSREPNSAKKVLALTPGQ----PV--YKILVVDDKSVNRQLLIKLLAPFGFEIEEASNG 662
Query: 996 KEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIAL 1055
+EA ++ I MD MPVM+G+EAT+ I+ + + ++AL
Sbjct: 663 QEAI-----------ALWESWEPHLIFMDMRMPVMDGYEATKYIKGQVKGNAT--AVVAL 709
Query: 1056 TAHAMAGVASKIVDAGMDFHLTKPLQKDKLLD 1087
TA + + ++ AG D L KP +++ + D
Sbjct: 710 TASVLEEEKAIVLSAGCDDFLRKPFRENTIFD 741
>gi|451979852|ref|ZP_21928261.1| putative Histidine kinase [Nitrospina gracilis 3/211]
gi|451762944|emb|CCQ89469.1| putative Histidine kinase [Nitrospina gracilis 3/211]
Length = 905
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 149/307 (48%), Gaps = 64/307 (20%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+NA +AE + K+ ++ SH++R + AI+G V++ D TD + + I+
Sbjct: 433 VNARIRAEEANQAKSMFISNMSHEIRTPMNAILGYVQILERDDTLSTDQKKRVDGIQKAG 492
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY------HVGIKKGVDVVL 494
LLG++N +++ SKIEAGKMEL +F+L+ L+ ++ +++ H+ +K
Sbjct: 493 NHLLGLINDILDFSKIEAGKMELNVAQFSLSGLIGDLQVIFHNRCERNHLTLK------- 545
Query: 495 DPCDGSVLGSCH-VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
D + G V GD+ KL+QIL NL+ N++KFT +G
Sbjct: 546 --VDYNFSGQRRWVEGDQGKLRQILINLLENAVKFTDQG--------------------- 582
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
K+FFR E D Q+ FEV DTG GIP +KQ ++F+ F
Sbjct: 583 ---------KVFFRVTEEKKD--------------QYLFEVVDTGCGIPLEKQEAVFDYF 619
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
+Q + + G GLGL I + V LM GE+ + + PG G F F++ L + ER
Sbjct: 620 IQNQNGQ--EKGGTGLGLSISRRQVELMGGELKL-ESYPG-WGSRFYFSIKLPSTQERPL 675
Query: 674 PDTDEED 680
D + D
Sbjct: 676 EDLRDYD 682
>gi|374812885|ref|ZP_09716622.1| multi-sensor hybrid histidine kinase [Treponema primitia ZAS-1]
Length = 556
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 146/295 (49%), Gaps = 47/295 (15%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
A+ S K+ L++ SH++R L AIIG+ ++ + A ++ + S LL +
Sbjct: 172 AQEASKAKSDFLSRMSHEIRTPLNAIIGMTKIARKSIENPVKAAASIDQVSAASAHLLDL 231
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH 506
+N+++++SKIE+GK E+ E FN+ + LEE+ + +K + ++ D L +
Sbjct: 232 INNILDISKIESGKFEVASEPFNIKEALEEIYIINDPRCKEKQIHFKVNAEDFETL---N 288
Query: 507 VRGDRVKLKQILCNLVSNSMKFT-SEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
V GD++++KQIL NL+ N++KFT EG IS LF
Sbjct: 289 VWGDKLRIKQILINLLGNAVKFTPKEGRIS----------------------------LF 320
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
K D + + EF V D G G+ ++QN +F F Q + G
Sbjct: 321 ISRKLETD------------SSITLEFSVSDDGIGMTPEQQNKLFNAFQQADSSIAGRFG 368
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL-TAVCERERPDTDEE 679
G GLGL I Q++V+LM G+I++ K + G FRF++ L A ++ PDTD E
Sbjct: 369 GTGLGLAISQNLVNLMGGQISVESK--VDEGTTFRFSLTLEKAETKQAEPDTDME 421
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 8/150 (5%)
Query: 936 SISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNG 995
S++ + +Q +D + +E L GK L+ ED I V +L + +F NG
Sbjct: 403 SLTLEKAETKQAEPDTDMEITELDLTGKHILLAEDVEINRIVLMELLSETHVEFTEAENG 462
Query: 996 KEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIAL 1055
K A D S +D I MD MPVM+G+EATR+IR + IPIIAL
Sbjct: 463 KIAVDIFSAAQSGF--------FDLIFMDIHMPVMDGYEATRIIRTMDRNDAAAIPIIAL 514
Query: 1056 TAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+A+A K + AGM+ H KP+ D +
Sbjct: 515 SANAYREDIDKALAAGMNGHTAKPIDIDAI 544
>gi|407698912|ref|YP_006823699.1| PAS signal transduction protein [Alteromonas macleodii str. 'Black
Sea 11']
gi|407248059|gb|AFT77244.1| PAS signal transduction protein [Alteromonas macleodii str. 'Black
Sea 11']
Length = 1099
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 145/303 (47%), Gaps = 62/303 (20%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++A+R + K+ LA SH++R + AIIGL L E + E L ++ S
Sbjct: 400 AYDEAQRANKAKSDFLATMSHEIRTPMNAIIGLTHLALESTD-NEQRQEYLEKVQRSSTA 458
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++NS+++ SK+EA K+E+++E F L + ++++ ++ +K + ++ D
Sbjct: 459 LLDLMNSILDFSKVEADKIEIIDEPFTLTKTIDKLAQVFQVKAQQKQLQLLFDI------ 512
Query: 503 GSCHV----RGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
CH RGD K+ Q+L NL+SN++KFT+ GH+
Sbjct: 513 -RCHTNLQCRGDSEKIYQVLLNLLSNAIKFTASGHV------------------------ 547
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
+ +VE+ N Q F V DTG GI + ++ +F+ FVQ
Sbjct: 548 -------------------ILTVEKREN--QLAFSVSDTGMGISEQVKSKLFKAFVQADA 586
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDE 678
+ G GLGL I + +V LM G++ + + ++G CF F + VC E PDT
Sbjct: 587 SISREYGGTGLGLAICKRLVELMGGDLTL--ESEVDKGSCFSFAL---PVCSDEGPDTGP 641
Query: 679 EDP 681
+ P
Sbjct: 642 QLP 644
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 17/140 (12%)
Query: 954 KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEG 1013
K + L K LVV+DDAI ++++ +L LG V +G++A L ++ K
Sbjct: 782 KWRTRRLVNKHVLVVDDDAISVEISQQILSDLGINVAVASSGEQAL-----ALCEMSK-- 834
Query: 1014 KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
+D I++DC +P ++G+E + ++ + Y PIIAL+A + + AGM
Sbjct: 835 ----FDAILLDCYLPGISGYEVAEQLSQKTDWY---TPIIALSADESQEASESALTAGMC 887
Query: 1074 FHLTKPLQKDKLLDVVKSID 1093
HL KP D ++V +ID
Sbjct: 888 QHLVKPATAD---EIVHTID 904
>gi|427419449|ref|ZP_18909632.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
gi|425762162|gb|EKV03015.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
Length = 923
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 148/286 (51%), Gaps = 43/286 (15%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA----ENLGLIRTCS 440
++AE S K+ LA SH++R + +IG L TDL+ E + +I+ S
Sbjct: 371 KKAEIASQAKSQFLANMSHEIRTPMNGVIGTTSLLL-----NTDLSFEQQEYVDIIQNSS 425
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
LLG++N +++ SKIE+G M L E F L +E+V+D++ ++K +D++ S
Sbjct: 426 DSLLGVINDILDFSKIESGYMVLEESSFELRHCIEDVLDLFASEALEKNLDLLYQI--AS 483
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGH--ISVRAAVKKKSFKQDIIASNRNVIS 558
+ C ++GD +L+QIL NLVSN++KFT +G ISVR +Q +++ + S
Sbjct: 484 DVPRC-IQGDLNRLRQILMNLVSNAIKFTEKGEVLISVR-------LRQSASLNSKTIDS 535
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNL-LQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
K L + P + EF V DTG GIP D +F++F QV
Sbjct: 536 KTLETI-------------------QPEFPIILEFFVKDTGIGIPIDGIPKLFKDFSQVD 576
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ G GLGL I + +V LM+GEI +A + G+ G F F++
Sbjct: 577 NSTTRKYGGTGLGLAICKRLVTLMRGEIWVA-SDVGQ-GSTFYFSM 620
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 117/267 (43%), Gaps = 50/267 (18%)
Query: 816 FTLVVIDATAGSVS--ELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLPICDH 873
F L +ID + ELV+ + + + D SL C ++ + H +E + D
Sbjct: 688 FDLAIIDVQMPGMDGLELVQQIRSLQLDF-SLPCIML----GAVSKPHDKE----ELFDA 738
Query: 874 VISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEA 933
+++P + L + + L + + SQ+ S++ Q+ D KSF +A
Sbjct: 739 WLTKPIKYANLWKAITDLVKAQQNSQQ---------YSEKQQNNCDTTA----KSFSQDA 785
Query: 934 GASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCR 993
+ +H S +G + PL + LV ED+ + V +L KL ++
Sbjct: 786 NSLSGAHGSG--------NGSGNHPPL---RILVAEDNPVNQMVVLRILAKLDYSGDLAA 834
Query: 994 NGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP-I 1052
NG E +L L ++ PYD I MD +MP ++G EAT I E++ P I
Sbjct: 835 NGLE-------VLEALERQ----PYDIIFMDLQMPEIDGLEATEQII---EKWGEDRPKI 880
Query: 1053 IALTAHAMAGVASKIVDAGMDFHLTKP 1079
IA TA+ + AGMD +++KP
Sbjct: 881 IAATANVQQEDQAACFAAGMDDYISKP 907
>gi|126661522|ref|ZP_01732570.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
gi|126617188|gb|EAZ88009.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
Length = 611
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 145/286 (50%), Gaps = 33/286 (11%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+AE + K+ +A SH++R L AI+G ++ + + EN+ +I
Sbjct: 128 AKEKAEVANEAKSAFIANMSHELRTPLNAILGFSQIMKRSSTLSQEEKENINIIGRSGDY 187
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N++++++KIEAGKM L +F+L L+EV D+ + KG+ + ++ D V
Sbjct: 188 LLTLINNILDLAKIEAGKMTLNPCDFDLYSCLQEVEDLLHLKANNKGLKLEIN-HDQDV- 245
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++ D KL+Q+L NL++N++KFTSEG + V+ ++ DI SN N SK L+
Sbjct: 246 -PQYINTDETKLRQVLINLINNAIKFTSEGGVFVQV----RNQPSDIKDSNLNNDSKSLT 300
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+ N V DTG GI + + +FE F Q E+
Sbjct: 301 NNDYIN-----------------------ITVQDTGVGIAAGELDKLFEAFAQT-ESGKK 336
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
EG GLGL I + V LM G+I + + E G F FN+ +T +
Sbjct: 337 SSEGTGLGLAISRKFVQLMGGDITVTTE--VESGTTFSFNIKITKI 380
Score = 47.0 bits (110), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+V+D + +L +G + + NG+EA + K P+ I M
Sbjct: 405 KILIVDDHPANRLLLIKLLQPVGFELQQATNGQEA----------IEKWETWQPH-LIFM 453
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM+G+EAT+ I+ + I+ALTA + + ++ AG D + KP Q+
Sbjct: 454 DMRMPVMDGYEATQYIKGIIKGNAT--AIVALTASFLEEEKAIVLSAGCDDFIRKPFQES 511
Query: 1084 KLLDVV 1089
+ DV+
Sbjct: 512 VIFDVI 517
>gi|427708807|ref|YP_007051184.1| integral membrane sensor hybrid histidine kinase [Nostoc sp. PCC
7107]
gi|427361312|gb|AFY44034.1| integral membrane sensor hybrid histidine kinase [Nostoc sp. PCC
7107]
Length = 760
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 147/295 (49%), Gaps = 51/295 (17%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
A+ + K+ +A SH++R+ L AI+G ++ G + EN+G+I + LL +
Sbjct: 296 ADSANQAKSTFIANMSHELRSPLNAILGFAQIMIRSQTLGREHQENVGIIYRSGEHLLTL 355
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH 506
+N+++++SKIEAGK L ++F+L +LL+++ DM++ +K + ++++ + C
Sbjct: 356 INNILDLSKIEAGKTTLNPKKFDLHRLLDDIHDMFHLKAEEKNLQLIMEYDPDLIRYIC- 414
Query: 507 VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFF 566
D VKL+Q+L NL++N++KFT G IS+R + ++A++
Sbjct: 415 --TDEVKLRQVLINLINNAIKFTQAGGISIRVST--------LVANS------------- 451
Query: 567 RNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEG 626
LH FE++D+G GI +++ IFE F Q T QEG
Sbjct: 452 ---------STLH------------FEIEDSGAGIAEEELGQIFEAFTQ-SATGKQAQEG 489
Query: 627 LGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDP 681
GLGL I + VHLM G I + K +G F++ V E + D P
Sbjct: 490 TGLGLPISRQFVHLMGGNITV--KSVVGQGTILLFDI---QVAEVKASDITTHQP 539
Score = 43.9 bits (102), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 15/127 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D ++ +L LG + NG+EA + + D + P+ I M
Sbjct: 554 RILIVDDKPNNRQLLIKLLSPLGFEIHEAINGQEAIN-----IWDSWE-----PH-LIWM 602
Query: 1024 DCEMPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MPVM+G+ AT+ I+ + Q V IIALTA + + I+ AG D + KP ++
Sbjct: 603 DMRMPVMDGYTATQQIKATTKGQATV---IIALTASVLEEEKAVIISAGCDDFVRKPFRE 659
Query: 1083 DKLLDVV 1089
+++ + +
Sbjct: 660 EEIFNAM 666
>gi|428217660|ref|YP_007102125.1| multi-sensor signal transduction histidine kinase [Pseudanabaena
sp. PCC 7367]
gi|427989442|gb|AFY69697.1| multi-sensor signal transduction histidine kinase [Pseudanabaena
sp. PCC 7367]
Length = 892
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 171/328 (52%), Gaps = 22/328 (6%)
Query: 335 SRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLC-AALIKQMNATE-QAERKSM 392
SR+ +L ++ + IA IS +L + + + + A LI Q+ A Q +
Sbjct: 560 SRSGRLGVLAIANTEIADAISREDINLLASFGVQAAIAIGNAQLINQIEAQNAQLLEATQ 619
Query: 393 NKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRTCSKDLLGILN 448
K+ LA SH++R + AIIG ++ L+EN L I K LL ++N
Sbjct: 620 LKSQFLANMSHELRTPMNAIIGFSQVLLRQRR--DSLSENQQDMLERILRNGKSLLELIN 677
Query: 449 SVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVR 508
++++SKIEAG+ME E F+L +L++ D + KG++ + + +G C +
Sbjct: 678 DILDLSKIEAGRMEASPEFFHLDELIQHTCDSLQPLASNKGLNFFFN----NQIGRCTIY 733
Query: 509 GDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL--SKLFF 566
D V+++Q++ NLVSN++KFT G + V V S + I S + + + S +
Sbjct: 734 HDPVRVRQVITNLVSNAIKFTDHGDVKV---VLHYSQPEPIANSEDDRDGQFIHQSSVEL 790
Query: 567 RNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEG 626
+ E + D+ + ++R P ++ +V DTG GI + Q +IFE+F QV +++ G
Sbjct: 791 DHIEHLNQADS-NKLDRQPPVI---IDVCDTGIGIDAEHQRTIFEQFRQVDQSSTRRHGG 846
Query: 627 LGLGLGIVQSMVHLMKGEIAIADKEPGE 654
GLGL I + +VH+M GEI++A PG+
Sbjct: 847 TGLGLAITEQLVHMMGGEISLAST-PGQ 873
>gi|411120682|ref|ZP_11393054.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
gi|410709351|gb|EKQ66866.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
Length = 1333
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 146/276 (52%), Gaps = 32/276 (11%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L AI+G +L D + + L +I + LL ++N ++E+
Sbjct: 839 KSIFLANMSHELRTPLNAILGFSQLLSRDPALNQEQQKQLSIINNSGEHLLNLINDILEV 898
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEAGK+++ E F+L QLL+ + M+ +G+++ + V D K
Sbjct: 899 SKIEAGKVQINENRFDLYQLLDNLEQMFQLKARDRGLNLSFEHSSDV---PRFVVTDEGK 955
Query: 514 LKQILCNLVSNSMKFTSEGHISVR--AAVKKKSFKQDIIASNRNVIS--KCLS--KLFFR 567
L+Q+L NL+SN++KFT+ G ++VR + +++ IA N I+ +CL+ KL
Sbjct: 956 LRQVLLNLISNAIKFTNSGSVTVRTMSVIEQSPMA---IAENTTSINHHECLAVPKL--- 1009
Query: 568 NKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGL 627
+ S E+ + FEV DTG GI ++ NS+F FVQV+ T EG
Sbjct: 1010 ----------IDSTEQT----KLYFEVIDTGCGIAAEEINSLFNAFVQVR-TNQQSSEGT 1054
Query: 628 GLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
GLGL I + V+LM G+I + K +G F F++
Sbjct: 1055 GLGLTISRHFVNLMGGDITVQSKVG--QGSTFAFDI 1088
Score = 48.1 bits (113), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 19/131 (14%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED ++ +L +G +NG+EA + S P+ I+M
Sbjct: 1118 RILIVEDHQQNRQLLVELLSPIGFAIHEAQNGQEAI----ALWSSWN------PH-LILM 1166
Query: 1024 DCEMPVMNGWEATRLIR-----KEEEQYDVHIP---IIALTAHAMAGVASKIVDAGMDFH 1075
D MPVM+G+EA R IR ++E + D + II LTA A AG D
Sbjct: 1167 DLRMPVMDGFEAMRQIRNQEKSRQENRNDKKVELTKIIVLTADAFEETKIATFIAGCDDF 1226
Query: 1076 LTKPLQKDKLL 1086
+ KP+Q + LL
Sbjct: 1227 IRKPIQANLLL 1237
>gi|402573332|ref|YP_006622675.1| PAS domain-containing protein [Desulfosporosinus meridiei DSM
13257]
gi|402254529|gb|AFQ44804.1| PAS domain S-box [Desulfosporosinus meridiei DSM 13257]
Length = 910
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 143/293 (48%), Gaps = 47/293 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E AE+ + K+ LA SH++R ++ ++G+ +L D E +I+TC +
Sbjct: 522 AKEDAEKANKAKSQFLANMSHEIRTPMSGVLGMAQLLIMDLEGKQ--KEMAKIIKTCGDN 579
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL I+N ++++S+IEAGK+ L E+F+ QL+EEV D+ + ++KG++ D +
Sbjct: 580 LLNIINDILDLSRIEAGKINLCLEDFDFRQLIEEVNDIIQPLALRKGLNYSF-FLDNEI- 637
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ + GD +LKQIL NL+ N++KFT G I + + +K K K +
Sbjct: 638 -NSRLLGDTGRLKQILFNLLGNAIKFTEHGSIEL-SILKGKVCKDRV------------- 682
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
Q F + DTG GI +DK +F F Q ++
Sbjct: 683 --------------------------QLLFSIKDTGMGIDEDKIGQLFTYFTQGDDSVTK 716
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPD 675
G GLGL I + +++M GEI++ + G F F+V+LT ER D
Sbjct: 717 KYGGTGLGLAISKQFINMMNGEISVESQ--AGVGSNFSFSVILTQSRNFERFD 767
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+VEDD + + + + + ++G EA + + K+ +D I+MD
Sbjct: 784 LLVEDDYVSGVLIKKLCERKNISLMIAKSGTEAIETL-----------KSQCFDLILMDI 832
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP ++G+E T++IR E+ H PIIA TA A+ G K + AGMD +L KP+ ++
Sbjct: 833 QMPDISGFETTKIIRATEKPLKKHTPIIATTAFALVGDREKCLSAGMDDYLVKPIDAEEF 892
Query: 1086 LDVV 1089
+V
Sbjct: 893 YKIV 896
>gi|449127546|ref|ZP_21763819.1| hypothetical protein HMPREF9733_01222 [Treponema denticola SP33]
gi|448944279|gb|EMB25160.1| hypothetical protein HMPREF9733_01222 [Treponema denticola SP33]
Length = 676
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 148/303 (48%), Gaps = 46/303 (15%)
Query: 363 IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED 422
I K +E FL A + AE+ + ++ LA SH++R + IIG++EL +D
Sbjct: 120 ITKQKLKEEFLIIA-------KQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELI-KD 171
Query: 423 ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY 482
N + +E + ++ LL ++N V++ SK+E+G M + FNL +E+ VD+
Sbjct: 172 TNLDEEQSEYTRQVNFSAEVLLALVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLIS 231
Query: 483 HVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKK 542
KKG+++V+D D + GD +L+Q+L N V N++KFT +G++SV V
Sbjct: 232 MEAHKKGLEIVVDISDKI---PDFIYGDPARLQQVLLNFVKNAVKFTEKGYVSVSVKV-- 286
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
++ N N I E+ ++L FEV DTG G+
Sbjct: 287 ------VLEGNPNNI----------------------DTEKRFSIL---FEVADTGIGVN 315
Query: 603 KDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
++++ IF F Q + G GLGL I ++++ +M+G+I I D P G F F
Sbjct: 316 AEQKSKIFNSFYQGSASINRKYGGTGLGLAISKNIITMMRGKIGIKDNIPA--GSVFWFK 373
Query: 663 VLL 665
+ L
Sbjct: 374 IPL 376
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
E+ G K LVV+D + K+ +L K +G+ A KE
Sbjct: 553 EENFFGCKVLVVDDHPVNQKLLKIILEKTNCTVSTANDGENAI-----------KEAAKE 601
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
+D I MD +MP +NG+EAT+++R E+ Y PIIA TA + G++ +
Sbjct: 602 EFDIIFMDIQMPGINGYEATQILR--EKGYSK--PIIACTAGSQDNERKLCESMGLNDII 657
Query: 1077 TKPLQKDKLLDVVK 1090
KP K +L ++VK
Sbjct: 658 KKPFNKKQLFEMVK 671
>gi|436841163|ref|YP_007325541.1| PAS/PAC sensor hybrid histidine kinase (modular protein)
[Desulfovibrio hydrothermalis AM13 = DSM 14728]
gi|432170069|emb|CCO23440.1| PAS/PAC sensor hybrid histidine kinase (modular protein)
[Desulfovibrio hydrothermalis AM13 = DSM 14728]
Length = 892
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 146/293 (49%), Gaps = 49/293 (16%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
+AE S K+ LA SH++R L I+G+++L +D +P +E + SK L
Sbjct: 508 RAEAASNTKSEFLANMSHEIRTPLNGILGMLQLM-QDNSPSPKQSEYISAAMQASKRLNS 566
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
+L+ +++++++E+GK+ + E+FN A+ L +V++M+ GV++ L D SV
Sbjct: 567 VLSDILDLARVESGKLIIRSEDFNPAESLHQVLEMFEITSKHSGVELNLH-IDPSVPQKL 625
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
H GD ++L+Q+L NLV N++KFT G +S+ A
Sbjct: 626 H--GDALRLQQVLSNLVGNAIKFTESGSVSIAAQ-------------------------- 657
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
+L + P LL F ++DTG GIP +K +F+ F Q+ + +
Sbjct: 658 -----------SLPTQHDRPYLL---FTIEDTGIGIPDEKLGMLFDSFTQIGKGYTRQHQ 703
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDE 678
G+GLGL I + ++ LM G I++ D E G RG F ++ E P T+E
Sbjct: 704 GVGLGLAICKRLISLMGGNISV-DTEVG-RGTTFYISIPFAPA---ETPPTEE 751
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 12/134 (8%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
E L G K L+ ED+ + T L + G E +G++ D + + +D
Sbjct: 763 ESELEGCKILIAEDEKVNRLYTKRFLEQRGCTVETAVDGQQTLDIL--MYND-------- 812
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075
+D I+MD +MPVMNG E T IRK E ++ IPIIA+TA+AM G K V AGM+ +
Sbjct: 813 -FDLILMDVQMPVMNGIETTEAIRKGEAGAHNKRIPIIAVTAYAMTGDKDKFVAAGMNDY 871
Query: 1076 LTKPLQKDKLLDVV 1089
+ KP+++ +L + +
Sbjct: 872 IAKPVEESELYNTI 885
>gi|428771175|ref|YP_007162965.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
aponinum PCC 10605]
gi|428685454|gb|AFZ54921.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
aponinum PCC 10605]
Length = 948
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 137/281 (48%), Gaps = 50/281 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E AE+ + K+ L+ SH++R L AI+G +L E+ N D ENL +I +
Sbjct: 416 AKEIAEKANQAKSVFLSSMSHELRTPLNAILGFSQLILEEENITKDTKENLQIIINSGEH 475
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V+E+SKIEAGKM L FN +L + M +K ++++L+ D ++
Sbjct: 476 LLSLINEVLEISKIEAGKMVLNNSTFNFYELASSLKSMLLIKATEKNINLLLE-IDNNI- 533
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ D KLKQIL NL+SNS+KFT G I+V+A ++ + +
Sbjct: 534 -PEFMYADERKLKQILLNLISNSLKFTQAGSITVKAVLETE------------------N 574
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
K++F + DTG+G+ ++ +F F Q E+ +
Sbjct: 575 KIYFA--------------------------ITDTGRGMKPEELEKLFTPFFQT-ESGIE 607
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
++G GLGL I + V +M GE+ + K +G F F +
Sbjct: 608 SKQGTGLGLTISRQFVKMMGGELKV--KSQFNQGTTFEFTI 646
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 12/123 (9%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K LV ED+ + K+ +L KL ++ ++G+E ++ L+KE YD I
Sbjct: 826 RKILVAEDNLVNQKLVVNLLNKLNYTVKIAKDGEE-------VIEILKKED----YDLIF 874
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MD EMP +NG +AT +I +E + PIIA++AH + S GM ++ KP+++
Sbjct: 875 MDIEMPKINGIKATEIIYQEFSHRQIP-PIIAMSAHEDENIISVCKSVGMKDYICKPIKQ 933
Query: 1083 DKL 1085
D L
Sbjct: 934 DNL 936
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D+ + + +L LG + NGKEA +I D + P+ I M
Sbjct: 677 RILIVDDEDNNRLLLTKLLQPLGFSLKEAVNGKEA----VEIWQDWQ------PH-LIWM 725
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDV--HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
D MPVM+G++ATR IRK+E + IIALTAHA +I+ G + + KP
Sbjct: 726 DIGMPVMDGFQATRAIRKKESMTESSHQTIIIALTAHAFMEEKGEILAVGCEEVVNKPFI 785
Query: 1082 KDKLLD 1087
K+ + +
Sbjct: 786 KEIIFE 791
>gi|350553739|ref|ZP_08922902.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349790034|gb|EGZ43960.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 918
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 145/302 (48%), Gaps = 45/302 (14%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN 432
L AA+ + + T QAER + K+ LA SH++R + +IG+ L + A T
Sbjct: 364 LQAAIKQAEDLTLQAERANAAKSEFLANMSHEIRTPMNGVIGMTTLLLDTALDATQ-RHY 422
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
++ ++ LLG+LN +++ SK+EAGK++L E ++A L++EV+ +K ++
Sbjct: 423 ADTVKKSAESLLGLLNDILDFSKVEAGKLDLEHLELDIATLVDEVISAQAVRAYEKNLE- 481
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
+L D VL S + GD +L+QIL NLV N++KF+ G + VR +
Sbjct: 482 LLCVLDDDVL-SLALSGDPGRLRQILNNLVGNAIKFSERGEVVVRVQL------------ 528
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
+E+ + FEV DTG GI DK +FE+
Sbjct: 529 ----------------------------LEKRAATARLRFEVCDTGIGIAADKVPLLFEK 560
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
F QV + G GLGL I + +V LM G I + +E +G F F+V LT +
Sbjct: 561 FSQVDASTTRRYGGTGLGLAICKQLVELMGGTIGVQSQE--GQGSVFWFSVPLTLNIDVP 618
Query: 673 RP 674
RP
Sbjct: 619 RP 620
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 12/127 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED+ + +V +L KLG + +G+ A DH+ + +D YD I+M
Sbjct: 787 RILLVEDNVVNQQVALGMLRKLGLQATAVNHGQAALDHLSQ--AD---------YDLILM 835
Query: 1024 DCEMPVMNGWEATRLIRKEE-EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D +MPVM+G AT+ IR + +D IPIIA+TAHAM + AGM+ +++KPL
Sbjct: 836 DVQMPVMDGITATQRIRAASGDAFDPRIPIIAMTAHAMPSDKEACLAAGMNDYVSKPLSL 895
Query: 1083 DKLLDVV 1089
+L V+
Sbjct: 896 AQLTTVL 902
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L ++ LVV+D+A + + LG+ G + +G EA ++L KE PY
Sbjct: 629 LQQRRILVVDDNATQRTLLTQRLGQWGMRAAGAADGVEAL----RLLYQAHKEEHE-PYQ 683
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++++ +MPVM+G R + + + + + +I L + A + AG L KP
Sbjct: 684 AVLINLQMPVMDGETLGRTLSADPQMQGL-LRVI-LPSVVRAEDPQRYQQAGFHACLPKP 741
Query: 1080 LQKDKLLDVVKSI 1092
+++ LL V++ +
Sbjct: 742 IRQTALLHVLQQL 754
>gi|296272592|ref|YP_003655223.1| integral membrane sensor hybrid histidine kinase [Arcobacter
nitrofigilis DSM 7299]
gi|296096766|gb|ADG92716.1| integral membrane sensor hybrid histidine kinase [Arcobacter
nitrofigilis DSM 7299]
Length = 765
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 140/283 (49%), Gaps = 55/283 (19%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+A + K+ LA+ SH++R L AI+G + + N + NL +I+ +
Sbjct: 309 AMEEANSANKAKSIFLARMSHELRTPLNAILGFSNILKKSMNATQEEKNNLNIIKRSGEH 368
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD--VVLDPCDGS 500
LL I+N ++E+SKIEAGK+E++ + FNL +L+E++ ++ +KG++ ++LD
Sbjct: 369 LLNIINEILELSKIEAGKIEIIPKVFNLKELIEDINSIFAFRCKEKGLEFKIILDDNLPE 428
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
V V+ D ++L+QIL NL+SNS+KFT+EG IS
Sbjct: 429 V-----VKMDELRLRQILINLLSNSLKFTNEGEIS------------------------- 458
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
L+ E++ L FE+ DTG GI +F+ F Q+K
Sbjct: 459 -----------------LYLYEKSQKLF---FEIKDTGIGIESKDLKRVFKPFEQIKHDD 498
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
++ G GLGL I + +V LM G +I K G F F+V
Sbjct: 499 Y-NKNGTGLGLSITKELVTLMNG--SIYAKSKVNVGTQFYFSV 538
Score = 45.4 bits (106), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 17/135 (12%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCR--NGKEAFDHVCKILSDLRKEGK 1014
EK ++ K LVV+D + + + +L G FEV + +G EA + +KE
Sbjct: 561 EKNIDKKTILVVDDIEVNRNLLTQILNSHG--FEVLQASSGYEAIEL-------FKKEDL 611
Query: 1015 ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDF 1074
+L I MD +M ++G E ++IRKEE+ D I I+A++A+ + +G +
Sbjct: 612 SL----IFMDIKMSGLDGLETIKIIRKEEKGKD--ISIVAVSANVFNEDKEIAIVSGAND 665
Query: 1075 HLTKPLQKDKLLDVV 1089
L KP+ + +LL V+
Sbjct: 666 FLAKPVDEKELLIVL 680
>gi|434397675|ref|YP_007131679.1| Cache sensor hybrid histidine kinase [Stanieria cyanosphaera PCC
7437]
gi|428268772|gb|AFZ34713.1| Cache sensor hybrid histidine kinase [Stanieria cyanosphaera PCC
7437]
Length = 950
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 144/281 (51%), Gaps = 41/281 (14%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A + AE + K+ LA SH++R L AI+G +L + + + ENLG+I +
Sbjct: 474 AKDIAELANRAKSEFLANMSHELRTPLNAILGFTQLMNRETSLTKKQQENLGIINRSGEH 533
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V++++KIE+G+M +F+L LL + +M KG+ ++++
Sbjct: 534 LLSLINDVLDLAKIESGQMTFYPTDFDLYTLLNLIEEMLALKAESKGLQLLIERSSNL-- 591
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+++ D KL+Q+L NL+ N++KFT++G +++R ++ ++ R CL+
Sbjct: 592 -PRYIQTDDKKLRQVLINLLGNAIKFTNDGSVTLRVSLVREE------EEKRGTGDICLA 644
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
FEV+DTG GI ++ +++FE FVQ +T
Sbjct: 645 -----------------------------FEVEDTGAGIADEEIDNLFEPFVQT-QTGKQ 674
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
Q+G GLGL I + V LM GEI+++ + +G F+F +
Sbjct: 675 LQQGTGLGLPISKEFVELMGGEISVSSQVG--KGTIFKFYI 713
Score = 43.1 bits (100), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D ++ +L +G + + NG+EA + ++ I M
Sbjct: 743 RILIVDDRWENRQLLIKLLQPIGFQVQEATNGQEAV-----------QLWESWQPHLIWM 791
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MP+MNG+EAT+ I+ + IIALTA + + ++ AG D + KP ++
Sbjct: 792 DMRMPIMNGYEATQQIKSHLK--GQATAIIALTASTLEEEKAVVLSAGCDDFVRKPFRE 848
>gi|218246325|ref|YP_002371696.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
gi|218166803|gb|ACK65540.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
Length = 1002
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 135/268 (50%), Gaps = 44/268 (16%)
Query: 384 TEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDL 443
T QA ++ K+ LAK SH++R L AI+G ++ + D++ + E LG+I + L
Sbjct: 520 TRQANAANLAKSQFLAKMSHELRTPLNAILGFTQMMNRDSSLSSQQQEYLGIINRSGEHL 579
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLG 503
L ++N V+EMS+IEAG++ L + FNL +L++ V ++ + KG+++ + +
Sbjct: 580 LSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGLELTVHQDEEL--- 636
Query: 504 SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAV-KKKSFKQDIIASNRNVISKCLS 562
++ GD KL+QI+ NLV N++KFT GHI + +V + + ++++
Sbjct: 637 PKYIEGDESKLRQIIVNLVGNAIKFTHVGHIDLYLSVLSHQPYTKEMM------------ 684
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+ EV DTG GI +D+ +IFE F Q E
Sbjct: 685 ---------------------------LQLEVKDTGIGINQDELETIFEAFKQT-ENNFQ 716
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADK 650
+EG GLGL I + LM G+I + +
Sbjct: 717 SKEGTGLGLSISRQFARLMGGDITVQSQ 744
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 18/132 (13%)
Query: 964 KFLVVED--DAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
+ LVVED D +L V +L +G + NG+EA + I + + I
Sbjct: 785 RILVVEDVRDNQLLMV--KMLESVGFQVRSANNGQEALE----IWQTWQPQ-------LI 831
Query: 1022 MMDCEMPVMNGWEATRLIRKEEE---QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
MD MPVM+G+EA+R IR +E + IIALTA A I+ G + ++K
Sbjct: 832 WMDMRMPVMDGYEASRQIRHQETTTPNLSTPVTIIALTATAFDEERKAILAVGCNDFVSK 891
Query: 1079 PLQKDKLLDVVK 1090
P Q++ + ++++
Sbjct: 892 PFQEEVIFEMMQ 903
>gi|389709421|ref|ZP_10186814.1| GacS-like sensor kinase protein [Acinetobacter sp. HA]
gi|388610222|gb|EIM39351.1| GacS-like sensor kinase protein [Acinetobacter sp. HA]
Length = 936
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 156/363 (42%), Gaps = 75/363 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + + L IR
Sbjct: 273 ITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLLLRQGNLSNEQSLYLQTIR 332
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K +D+
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETALFDLEEAIFDVMDMLSPLAAQKHIDMAFYYA 392
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D + C V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 393 DN--VPKC-VNGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 437
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 438 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 469
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +V LM G+I D + P E+G F F
Sbjct: 470 TSVTRQFGGTGLGLAISKQLVSLMHGQIGFEDNQERAPTEKGSTFWFTAQFL-------- 521
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNI 734
DE+D H D+ ++ ++A VL+ Y+EN N+
Sbjct: 522 -VDEDDVIEHPDF-------------------NNLTVVSYLAHPATANVLRHYLEN-YNV 560
Query: 735 KVT 737
K T
Sbjct: 561 KHT 563
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 88/171 (51%), Gaps = 15/171 (8%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQS--DGKCSEKPLNGK--KFLVVED 970
Q DPN LN+ + A A S + +Q + Q D + E NG+ L V+D
Sbjct: 616 QMQLDPNMLNE---YRARALYQPLSRSALIQLLNNQPVFDQETHED-FNGQGLHILAVDD 671
Query: 971 DAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM 1030
L V A+LG+L +G+EA D + K R E +D + MD +MPVM
Sbjct: 672 HLPNLIVLEALLGELNVTTTKATSGQEAIDIIQK-----RHEEGLSAFDLVFMDIQMPVM 726
Query: 1031 NGWEATRLIRKEEEQYDVH--IPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
+G + TR IR E ++ H +PIIALTAHA++ K++ GMD ++TKP
Sbjct: 727 SGMDTTRAIRSLESTFENHRRLPIIALTAHALSDEKQKLLQGGMDDYVTKP 777
>gi|257059372|ref|YP_003137260.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
gi|256589538|gb|ACV00425.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
Length = 1002
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 135/268 (50%), Gaps = 44/268 (16%)
Query: 384 TEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDL 443
T QA ++ K+ LAK SH++R L AI+G ++ + D++ + E LG+I + L
Sbjct: 520 TRQANAANLAKSQFLAKMSHELRTPLNAILGFTQMMNRDSSLSSQQQEYLGIINRSGEHL 579
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLG 503
L ++N V+EMS+IEAG++ L + FNL +L++ V ++ + KG+++ + +
Sbjct: 580 LSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGLELTVHQDEEL--- 636
Query: 504 SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAV-KKKSFKQDIIASNRNVISKCLS 562
++ GD KL+QI+ NLV N++KFT GHI + +V + + ++++
Sbjct: 637 PKYIEGDESKLRQIIVNLVGNAIKFTHVGHIDLYLSVLSHQPYTKEMM------------ 684
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+ EV DTG GI +D+ +IFE F Q E
Sbjct: 685 ---------------------------LQLEVKDTGIGINQDELETIFEAFKQT-ENNFQ 716
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADK 650
+EG GLGL I + LM G+I + +
Sbjct: 717 SKEGTGLGLSISRQFARLMGGDITVQSQ 744
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 18/132 (13%)
Query: 964 KFLVVED--DAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
+ LVVED D +L V +L +G + NG+EA + I + + I
Sbjct: 785 RILVVEDVRDNQLLMV--KMLESVGFQVRSANNGQEALE----IWQTWQPQ-------LI 831
Query: 1022 MMDCEMPVMNGWEATRLIRKEEE---QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
MD MPVM+G+EA+R IR +E + IIALTA A I+ G + ++K
Sbjct: 832 WMDMRMPVMDGYEASRQIRHQETTTPNLSTPVTIIALTATAFDEERKAILAVGCNDFVSK 891
Query: 1079 PLQKDKLLDVVK 1090
P Q++ + ++++
Sbjct: 892 PFQEEVIFEMMQ 903
>gi|381160225|ref|ZP_09869457.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380878289|gb|EIC20381.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1200
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 139/296 (46%), Gaps = 49/296 (16%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGT---DLAENLGLIRTCSKDLLGILNSV 450
K+ LA SH++R L AI+GL +L GT E L + SK LL ++N +
Sbjct: 436 KSGFLANMSHEIRTPLNAIMGLTDLLLR----GTLEERQREFLTKTKLASKSLLAVINDI 491
Query: 451 MEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGD 510
++ SKIEAG +E+ + +F+L +L+ + +M+ + +KGV++V+ G+ + GD
Sbjct: 492 LDFSKIEAGHLEIEQTDFSLHELIANLSEMFAYRAHEKGVELVVAIAPGT---PTELIGD 548
Query: 511 RVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKE 570
+L QIL NL N++KFT +G + + A + + S
Sbjct: 549 PTRLSQILINLTGNALKFTQQGEVQITADLAQTS-------------------------- 582
Query: 571 GFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLG 630
E P+ ++ +V DTG GI ++ ++IFE F Q + G GLG
Sbjct: 583 ------GTPGSEEAPDTVKLRLQVRDTGPGIAPERLDAIFEAFAQADGSVTRRHGGTGLG 636
Query: 631 LGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHND 686
L I + + HLM G++ +A PG+ G F C R +P+ RT D
Sbjct: 637 LAICRRLAHLMGGDVTVASV-PGQ-GSTF-----TATACLRRQPNRAASPLRTPAD 685
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 13/131 (9%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L+G++ L+VED + V L ++ NG EA + V +E Y+
Sbjct: 834 LSGQRVLLVEDIEMNRLVALEWLEAARLDTDIAENGLEALNKV--------RENT---YN 882
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MP ++G EATR IR E D H+PIIA+TAHA+ G + + AGMD +L+KP
Sbjct: 883 AVLMDIQMPELDGLEATRRIRAEFP--DRHLPIIAMTAHALKGDMERCLAAGMDDYLSKP 940
Query: 1080 LQKDKLLDVVK 1090
+ +L ++
Sbjct: 941 IDPAQLFGALE 951
Score = 44.3 bits (103), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 12/134 (8%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G + LVVED+A ++ A + + +G+EA + + A +D
Sbjct: 686 LRGLRVLVVEDNATSREMLVAQIESFHMRAVAVASGEEALNQLAD---------PAQSFD 736
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIAL-TAHAMAGVASKIVDAGMDFHLTK 1078
+++D +MP +NG E IR++ + H P++ + +A+A + + + +D L K
Sbjct: 737 LVLLDWKMPGLNGLETAVRIRQDLKL--PHTPMVCMISAYAREDLLQQSERSVLDAFLHK 794
Query: 1079 PLQKDKLLDVVKSI 1092
P+ + L D + S+
Sbjct: 795 PVNQSFLFDTIVSL 808
>gi|94271091|ref|ZP_01291888.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93450562|gb|EAT01700.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 421
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 138/292 (47%), Gaps = 36/292 (12%)
Query: 391 SMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSV 450
S K+ L+ SH++R L IIG L E + + L +I+T LL ++N +
Sbjct: 3 SAYKSRFLSAMSHEIRTPLQTIIGFSNLALEGGS--QPPRQYLEMIKTAGDTLLELINGI 60
Query: 451 MEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV--DVVLDPCDGSVLGSCHVR 508
++++KIE+G++EL E F A+ + + ++ Y ++G+ D +DP +V G V
Sbjct: 61 LDLAKIESGRLELAERCFKPAEFIGKTLEPYAFAARQRGLAFDTSIDP---AVPG--EVV 115
Query: 509 GDRVKLKQILCNLVSNSMKFTSEGHI--SVRAAVKKKSFKQDIIASNRNVISKCLSKLFF 566
GD +L Q+L NLV N++KFT EG I SVR A + + A V S
Sbjct: 116 GDPARLTQVLVNLVGNALKFTEEGEIVVSVRPAADDADRRPTVGAGRAEVAPPAAS---- 171
Query: 567 RNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEG 626
DA + F V D+G GI ++Q IF F Q + + G
Sbjct: 172 ---------DATSGL--------LHFTVRDSGSGIAAEQQGRIFNRFAQGE--GISTHGG 212
Query: 627 LGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDE 678
GLGL I S+V LM GEI + + PGE G F F + RER +E
Sbjct: 213 HGLGLAIAASLVELMGGEIWL-ESRPGE-GSSFHFTIAYRLPPPRERATAEE 262
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LV ED+ + + +L G + NG+EA + + + G+ I+MD
Sbjct: 302 ILVAEDNEFNRLLLTDLLQNHGHRVLAASNGREAVE--------IYRSGQC---QLILMD 350
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
MP ++G EATR IR+ E Q IPI+ +TA K + AGMD TKP+
Sbjct: 351 MMMPELDGLEATRAIRRLEAQGGSRIPIVGVTAGTQPEEIQKCLAAGMDCCFTKPVDIKS 410
Query: 1085 LL 1086
LL
Sbjct: 411 LL 412
>gi|408792898|ref|ZP_11204508.1| GHKL domain protein [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408464308|gb|EKJ88033.1| GHKL domain protein [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 847
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 137/286 (47%), Gaps = 49/286 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A + AE + K+ LA SH++R + I+G+ EL + N D A+ L +I+ +
Sbjct: 460 TAKQLAETANKAKSQFLATMSHEIRTPMNGILGITELL-KMTNVSKDQAQYLKMIQDSGQ 518
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV--DVVLDPCDG 499
LL ILN +++ SK+EAGK+EL+E +F+ LLE ++ H +K V +V DP D
Sbjct: 519 SLLTILNDILDYSKLEAGKIELLESDFSWKILLELAEGIFKHQAEQKQVRFEVHFDP-DF 577
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
L GD ++KQ+L NL+SN++KFT G I + + KK
Sbjct: 578 IFLA----HGDENRIKQVLFNLISNAVKFTESGEIKILLSSKK----------------- 616
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
E N +Q+ + DTG GIP+DK S+F+ F Q+ +
Sbjct: 617 ----------------------EEVGNWIQYIVSIRDTGIGIPEDKIGSLFQRFTQLDSS 654
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + ++ +M GE+ + P G CF + L
Sbjct: 655 ISRKYGGTGLGLAISKKIMDVMGGELKVKKNFP--TGSCFEIELRL 698
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+ EDD L + S+ L KL + +V ++G EA V K ++ + I MD
Sbjct: 725 LIAEDDPTNLFLLSSFLKKLKVRHDVAKDGWEA---VTKAQTN--------EFHLIFMDI 773
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
MP ++G A+ I K+E + I IIA+TA A K + AGM L KP QK ++
Sbjct: 774 NMPNLDGIGASEEILKDERIFPKPI-IIAVTADAFQDDQDKCIRAGMSSFLPKPFQKREI 832
>gi|322420676|ref|YP_004199899.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
gi|320127063|gb|ADW14623.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
Length = 815
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 134/289 (46%), Gaps = 57/289 (19%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTD--LAENLGLIRTCSKD 442
E AE S+ K+ LA SH++R + ++G+V + E G AE +R +
Sbjct: 293 EAAEAASLAKSQFLANMSHEIRTPMNGVLGMVSVLLESGLAGEQRRFAEA---VRNSGES 349
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGS 500
LL I+N +++ SKIEAG+MEL F+L LL V++M+ +KGV V LDP
Sbjct: 350 LLSIINDILDFSKIEAGRMELEPAPFDLQDLLGGVLEMFAAGAQRKGVTVSLQLDPALPR 409
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+V GD V+L+QIL NL+ N++KFTS G + ++AA
Sbjct: 410 -----YVEGDPVRLRQILVNLLGNAVKFTSRGSVQLKAAALA------------------ 446
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
EG+ FEV DTG GI + Q IFE F Q +
Sbjct: 447 --------GEGW-----------------LRFEVADTGIGIRPEAQAHIFESFSQADYST 481
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVC 669
G GLGL I + + LM GE+ + E G G F F+V L +C
Sbjct: 482 TRTYGGTGLGLAISRQLAELMGGELGL-QSEYGV-GSAFWFSVRLEVLC 528
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 12/126 (9%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LV ED+ + V +LG+LG + E+ NG+ A ++ +EG Y + MDC
Sbjct: 554 LVAEDNPVNQDVVRHMLGQLGCRVEIVENGELA-------VAASGREG----YHLVFMDC 602
Query: 1026 EMPVMNGWEATRLIR-KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
+MP M+G+ ATR IR +E + +PI+ALTA+A+AG + AGMD +LTKP +
Sbjct: 603 QMPQMDGFAATRAIRGREAGEGGRRLPIVALTANALAGDRELCLAAGMDDYLTKPFDCRQ 662
Query: 1085 LLDVVK 1090
L +V++
Sbjct: 663 LAEVLQ 668
>gi|126738369|ref|ZP_01754090.1| sensor histidine kinase/response regulator [Roseobacter sp.
SK209-2-6]
gi|126720866|gb|EBA17571.1| sensor histidine kinase/response regulator [Roseobacter sp.
SK209-2-6]
Length = 764
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 141/289 (48%), Gaps = 55/289 (19%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL----IR 437
+A E+AE + K+ LA SH++R + ++G+ EL + T L+E L I+
Sbjct: 204 SARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLSD-----TSLSEEQKLYANTIK 258
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
+ LL I+N V++ SKIEA KM L EE F+L + + E+V + KG+ +++
Sbjct: 259 NSGEALLVIINDVLDYSKIEADKMVLHEEPFDLERAIHEIVMLLQPTARDKGLTMLV--- 315
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D + GDR +++Q++ NL N++KFT+EGH+++R I +
Sbjct: 316 DYDLFLPTRFVGDRGRIRQVMTNLAGNAVKFTNEGHVTLRVT--------GISNPDEGTC 367
Query: 558 S-KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
S CL ++DTG GIP DK + +F EF QV
Sbjct: 368 SVHCL--------------------------------IEDTGIGIPADKVDHVFGEFNQV 395
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
++ EG GLGL I + ++ LM GEI + E GE G CF F + L
Sbjct: 396 EDERNRKFEGTGLGLAISKKLIELMDGEIWVESDE-GE-GSCFGFRIPL 442
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 47/64 (73%)
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D I MD MP M+G EAT+ IRK E + H+PI+ALTAHAM+G + I+ AG+D +LTK
Sbjct: 677 DLIFMDISMPEMDGKEATQEIRKIEAETGKHVPIVALTAHAMSGDSEGILAAGLDHYLTK 736
Query: 1079 PLQK 1082
PL+K
Sbjct: 737 PLRK 740
>gi|340788769|ref|YP_004754234.1| hybrid sensory histidine kinase in two-component regulatory system
with EvgA [Collimonas fungivorans Ter331]
gi|340554036|gb|AEK63411.1| Hybrid sensory histidine kinase in two-component regulatory system
with EvgA [Collimonas fungivorans Ter331]
Length = 1229
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 136/268 (50%), Gaps = 48/268 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+A+ S K+ LA SH++R + AIIG++EL + G ++ + +K
Sbjct: 721 AKEEADEASRAKSTFLATMSHEIRTPMNAIIGMLELVLKRGENGLWDRPSIKVAYDSAKT 780
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDGS 500
LLG++ +++++KIE+GK+ELV E NL +L+E V ++ + +KG+ + +D G
Sbjct: 781 LLGLIGDILDIAKIESGKLELVPERANLRELVEAVARVFDGLARQKGLTLRTFIDANAG- 839
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
V D ++ KQIL NLVSN++KFT EG +++R V+++
Sbjct: 840 ----VEVLVDPMRFKQILSNLVSNAIKFTQEGEVTIRLDVQEE----------------- 878
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
K+G L + +V DTG GI +D+Q +F FVQ T
Sbjct: 879 --------KDG---------------RLALQLQVSDTGSGIAQDEQAKLFAPFVQASATR 915
Query: 621 LGHQE-GLGLGLGIVQSMVHLMKGEIAI 647
E G GLGL I + + +M G+IA+
Sbjct: 916 PRSAENGTGLGLAISRRLAQMMGGDIAL 943
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 959 PLNGKKFLVVEDDAIVLK-VTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
P G+ ++V DD + + V L LG E +G+EA + +A
Sbjct: 977 PKLGRLRVLVADDNVANRLVLCQQLQYLGHDVESAEDGREAL-----------QIWRAGS 1025
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
+D +M DC MPVM+G++ R IR E E I TA+A + AGMD L
Sbjct: 1026 FDLVMTDCNMPVMSGYQLAREIRNETET--PRCVIWGYTANAQPEEIQRCKAAGMDDCLF 1083
Query: 1078 KPLQKDKL 1085
KP+ D L
Sbjct: 1084 KPIGLDDL 1091
>gi|220910672|ref|YP_002485982.1| histidine kinase [Cyanothece sp. PCC 7425]
gi|219867444|gb|ACL47781.1| histidine kinase [Cyanothece sp. PCC 7425]
Length = 810
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/340 (30%), Positives = 167/340 (49%), Gaps = 59/340 (17%)
Query: 344 LLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMN-------KTF 396
L + + + G+IS+ L I + AK+ L + ++ N++ Q E+K+ K+
Sbjct: 297 LAITVVLVGLISVALLSICVYWLAKQ---LSLSRLQLENSSRQLEQKAQEAEAANHAKSA 353
Query: 397 ALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKI 456
LA SH++R L AI+G ++ D E+L +I + LLG++N V+EMSKI
Sbjct: 354 FLAHMSHELRTPLNAILGFAQVMERDPLLTHQQQESLAIINRSGEHLLGLINDVLEMSKI 413
Query: 457 EAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQ 516
EAG++ L F+L +LL+ + DM+ G + + L+ + L +V D KL+Q
Sbjct: 414 EAGQIVLHPGAFDLHELLQTLRDMFQ--GRAEAKQLALNVNLAADL-PRYVISDEGKLRQ 470
Query: 517 ILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLD 576
+L NL+SN++KFT +G +++ AA +++ G + L
Sbjct: 471 VLINLLSNAVKFTDQGTVTLEAA--------------------------YQHHTGANYLT 504
Query: 577 ALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQS 636
F V DTG+GI ++Q +F+ F Q L +EG GLGL I +
Sbjct: 505 ---------------FAVADTGRGIAPEEQEHLFQPFFQ-SAAGLKTEEGTGLGLSISRQ 548
Query: 637 MVHLMKGEIAIADKEPGERGVCFRFN--VLLTAVCERERP 674
V LM G+I+ A+ + G+ G F+F V L A +RP
Sbjct: 549 FVDLMGGQIS-ANSQLGQ-GTVFKFEIKVELAAPVVSDRP 586
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 24/144 (16%)
Query: 955 CSEKPLNGK-----------KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVC 1003
S++P++G+ + LVV+D +L +G + + NGKEA +
Sbjct: 582 VSDRPVSGRVIGLGPGQSEYRILVVDDRQENRDPLIVLLNAVGFQTQTASNGKEAIERWQ 641
Query: 1004 KILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGV 1063
L I MD MPVM+G+ ATR I+ + D IIALTA A
Sbjct: 642 TWHPQL-----------IWMDMLMPVMDGYTATRTIKSQPGGKDT--VIIALTATAFEEQ 688
Query: 1064 ASKIVDAGMDFHLTKPLQKDKLLD 1087
++I+ AG D + KP +++ + +
Sbjct: 689 QAQILAAGCDDFVRKPFREEVIFE 712
>gi|411117040|ref|ZP_11389527.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
gi|410713143|gb|EKQ70644.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
Length = 1270
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 132/277 (47%), Gaps = 44/277 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A +QAER S K+ LA SH++R + ++G+ L D + + + IR +
Sbjct: 578 ARQQAERASQMKSTFLATMSHEIRTPMNGVLGMTSLLL-DTQLNAEQRDFVETIRCSGET 636
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N +++ SK+EAG+MEL EF+L +EEV D+ KG+++
Sbjct: 637 LLTLINQILDFSKLEAGEMELETLEFDLNTCIEEVADLVAATAHAKGLELATLVYRNL-- 694
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++GD +L+Q+L NLVSN++KFT++G + ++AA+K ++ D A+
Sbjct: 695 -PTRLKGDVSRLRQVLTNLVSNAVKFTAQGEVVIQAALKAET---DTTAT---------- 740
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
F V DTG GIP + Q +F+ F QV +
Sbjct: 741 ---------------------------IMFSVTDTGIGIPLEAQRKLFKPFSQVDASTTR 773
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
G GLGL I + +V LM GEI + E E F
Sbjct: 774 RYGGTGLGLAISKQLVELMGGEIGVDSTEGKEARFWF 810
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 12/122 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+VED+ I KVT L LG K +V NGKEA + +I PYD I+M
Sbjct: 1008 KLLLVEDNVINQKVTLNQLKNLGYKADVAANGKEALQMLEQI-----------PYDLILM 1056
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
DC+MPV++G+ T+ IR+ E D H ++ALTA+A+ ++ + AGMD +L+KP+ KD
Sbjct: 1057 DCQMPVLDGYSTTQEIRRIE-GTDRHTIVVALTANALREDRARCIQAGMDDYLSKPILKD 1115
Query: 1084 KL 1085
KL
Sbjct: 1116 KL 1117
Score = 40.4 bits (93), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L+ K LVV+D KV + G + + N + A K+L D G PY
Sbjct: 833 LSQIKALVVDDHTTNRKVLCHQISAWGMRVDEAANARTAL----KMLRDQAIAGT--PYH 886
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++D +MP M+G I+ + Q +I +T+ G A + G +L KP
Sbjct: 887 VAILDMQMPEMDGEMLGACIKSD--QLLQTTRLIMMTSLNHWGGARNALQLGFSAYLVKP 944
Query: 1080 LQKDKLLDVV 1089
+++ +LLD +
Sbjct: 945 VKQSRLLDCI 954
>gi|254444274|ref|ZP_05057750.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198258582|gb|EDY82890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 748
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 136/281 (48%), Gaps = 47/281 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A + AE ++ K+ LA SH++R + ++G++ L ED + + LG + C+ D
Sbjct: 81 AMKAAESANVAKSEFLATMSHEIRTPMNGLVGVLTLLEEDL--PFEKRKLLGTAQECADD 138
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N +++ SKIEAGKM L EFN L E + +++ KKG+++ D S
Sbjct: 139 LLVLINDILDFSKIEAGKMNLESVEFNALNLAESICELHSSSAHKKGLEITSDSDPSSAF 198
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
C + GD ++L+Q++ NL SN++KFT++G I V ++ K +Q+ +
Sbjct: 199 --CSI-GDPLRLRQVISNLTSNAIKFTNQGEIVVTPSIVSKDCEQNYL------------ 243
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
FE+ D+G GI K+ Q +F F Q +
Sbjct: 244 ----------------------------RFEITDSGIGITKETQEKLFNAFTQANSSTTR 275
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + ++ +M G+I ++ KE G F F +
Sbjct: 276 EFGGTGLGLAISKKLIEIMGGDIGVSSKEG--TGSTFWFEI 314
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 84/138 (60%), Gaps = 13/138 (9%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGA-KFEVCRNGKEAFDHVCKILSDLRKEGK 1014
S KP + + L+V+D++ + S +L + A + NG++A D + ++G
Sbjct: 482 SSKPHSDLQILLVDDNSTNRMIASQLLRQKHAIDPKNASNGRQAIDAL--------QDGT 533
Query: 1015 ALPYDYIMMDCEMPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
+D ++MDC MP M+G++ATR IR+ + + + IPIIALTA+AM+G + AGM+
Sbjct: 534 ---FDLVLMDCMMPEMDGYDATRAIREGQAGEKNKDIPIIALTANAMSGDRENCISAGMN 590
Query: 1074 FHLTKPLQKDKLLDVVKS 1091
+L+KP++ +L +++++
Sbjct: 591 AYLSKPIRPKELAEILQT 608
>gi|119493069|ref|ZP_01623994.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
gi|119452814|gb|EAW33989.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
Length = 1727
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 138/265 (52%), Gaps = 32/265 (12%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
AE S K+ LA SH++R + A+IG+ L D N + + + IRT LL I
Sbjct: 980 AEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLL-DMNLNPEQRDFVETIRTSGDALLTI 1038
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDGSVLGS 504
+N +++ SKIE+GK+EL + F L +EE +D+ +KG+++ ++DP V+
Sbjct: 1039 INDILDFSKIESGKLELEHQPFKLRTCIEESLDLLSARASEKGLELAYIVDPNTPEVM-- 1096
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHI--SVRAAVKKKSFKQDIIASNRNVISKCLS 562
GD +L+Q+L NL+SN++KFT++G + SV +++ + S + I + +N +S
Sbjct: 1097 ---VGDVTRLRQVLVNLLSNAVKFTNQGEVIVSVTSSLIQDSAQSLISSEEKNESQPSIS 1153
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
P + + +F V DTG GIP D+ + +F+ F QV +
Sbjct: 1154 ----------------------PPIYEVQFAVKDTGIGIPPDRMHRLFKAFSQVDASTTR 1191
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAI 647
G GLGL I Q + +M G++ +
Sbjct: 1192 QYGGTGLGLAISQRLSEMMGGKMWV 1216
Score = 77.8 bits (190), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 16/157 (10%)
Query: 933 AGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVC 992
AG I H SSL+ + +S + + L+ ED+ KV + +L +LG + ++
Sbjct: 1410 AGNEIIEHSSSLK-LTDESGPLNPPQNHAALRILLAEDNVTNQKVATKLLQRLGYRADIA 1468
Query: 993 RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE----EEQYDV 1048
NG E D + K PYD ++MD +MP M+G EA+R I KE +
Sbjct: 1469 GNGVEVLDAL-----------KRQPYDVVLMDVQMPQMDGLEASRRICKEYGEGSDGRQK 1517
Query: 1049 HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
IIA+TA+AM G ++AGMD ++TKP+++++L
Sbjct: 1518 KPWIIAMTANAMRGDREMCLEAGMDDYVTKPVRREEL 1554
>gi|298528267|ref|ZP_07015671.1| integral membrane sensor hybrid histidine kinase
[Desulfonatronospira thiodismutans ASO3-1]
gi|298511919|gb|EFI35821.1| integral membrane sensor hybrid histidine kinase
[Desulfonatronospira thiodismutans ASO3-1]
Length = 809
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 145/300 (48%), Gaps = 53/300 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++AE + K+ LA SH++R L I G+++L + ++ E + L + +
Sbjct: 418 ARDKAETANRAKSEFLANMSHEIRTPLNGITGMMQLL-QTTRLDSNQKEYVDLALSSASR 476
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDGS 500
L +L+ ++++S++EAG+M ++EEEFN+ +L V +++ +KG+++ LDP S
Sbjct: 477 LTRLLSDILDLSRVEAGRMVILEEEFNVQELCRSVCELFRIQAGEKGIELEYTLDPSLPS 536
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
L GD +L+QIL NLV NS+KFT EG + + ++K+
Sbjct: 537 RL-----MGDETRLQQILFNLVGNSLKFTREGRVRINWTLQKR----------------- 574
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
G D L V DTG GI +K + +F+ FVQ ++
Sbjct: 575 ----------GLDRHQVL-------------ITVTDTGSGIAPEKLDDLFQPFVQEDGSS 611
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
EG GLGL IV +V LM G I++ D PGE + F L P+ D++D
Sbjct: 612 TRRHEGAGLGLSIVSRLVDLMHGTISV-DSAPGEGTAFYIFLPLKVPAA----PEADQDD 666
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 19/142 (13%)
Query: 954 KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEG 1013
K + KPL + LV ED+ +L LG K + +G +A + +
Sbjct: 672 KGAGKPL---RILVAEDEPTNQLFAGRLLEYLGHKVMIAEDGSQALELL----------- 717
Query: 1014 KALPYDYIMMDCEMPVMNGWEATRLIRKEEE---QYDVHIPIIALTAHAMAGVASKIVDA 1070
+ +D I+MD MP M+G EA R IR E + DV PIIA+TAHAM G A
Sbjct: 718 QQHEFDCILMDIRMPFMDGLEAARAIRTSRELGARRDV--PIIAMTAHAMEGDREVFFQA 775
Query: 1071 GMDFHLTKPLQKDKLLDVVKSI 1092
GM+ +L KP+QK+ L V++ I
Sbjct: 776 GMNGYLAKPVQKEDLEKVLQGI 797
>gi|374996962|ref|YP_004972461.1| ATPase [Desulfosporosinus orientis DSM 765]
gi|357215328|gb|AET69946.1| putative ATPase [Desulfosporosinus orientis DSM 765]
Length = 1932
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 137/265 (51%), Gaps = 38/265 (14%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
Q E+ + KT LAK SH++R L I G+ L + + E+L I ++ LL
Sbjct: 1410 QLEQANQAKTEFLAKMSHEMRTPLHGIFGMASLIQK-GRLLPEQGEHLKSIIDSAQVLLE 1468
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
I+N +++ SK+EA ++EL E+ F++ LLEE++ + +KG+ V ++ + G
Sbjct: 1469 IINQILDSSKVEANRIELEEKTFDITFLLEELIPGFLVKAQEKGLQVKIESTPDTFSG-- 1526
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
+RGD +++KQIL NL+SN++KFT +G I VR +V I N
Sbjct: 1527 -LRGDPLRIKQILANLLSNAIKFTEKGLIQVRYSV---------IPQN------------ 1564
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
A H E P L E ++D+G GIP+DK + IFE+F QV +
Sbjct: 1565 ----------PATHE-EGAPATL--EMSIEDSGIGIPQDKLDYIFEDFTQVDSSISRKYG 1611
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADK 650
G GLGL I + ++ LMKG I + +
Sbjct: 1612 GTGLGLAITKKLLDLMKGSITVESR 1636
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 11/140 (7%)
Query: 955 CSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK 1014
C + L K LV EDDA+ K A+L LG ++ NG E + E K
Sbjct: 1671 CQFQDLGKLKVLVAEDDAVSRKYVQALLHYLGCNAKMVLNGLEVLE-----------ELK 1719
Query: 1015 ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDF 1074
A YD ++MD MP ++G E TR IR+ E H+PIIALTA A+AG K++ AGMD+
Sbjct: 1720 AREYDCVIMDKNMPELDGIETTRRIRRNEALTGKHLPIIALTASALAGDREKLLAAGMDY 1779
Query: 1075 HLTKPLQKDKLLDVVKSIDE 1094
+TKP+ + L+ +++ I +
Sbjct: 1780 FITKPIHEAHLIQLLEGIQQ 1799
>gi|406888085|gb|EKD34675.1| Sensor protein [uncultured bacterium]
Length = 752
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 163/358 (45%), Gaps = 62/358 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+AE+ NK+ LA SH++R + IIGL ++ + G L ++ + ++
Sbjct: 354 AKERAEQAERNKSTFLANMSHEIRTPMNGIIGLTDIILKSDISGHQRT-YLEMVHSSAER 412
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N +++ SKIEAGK+EL F+L L + V++ +K + + +D CD S+
Sbjct: 413 LLKLINDILDFSKIEAGKLELAIAPFSLRHTLADAVEILGVSAAQKAISLSVD-CDESI- 470
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHI--SVRAAVKKKSFKQDIIASNRNVISKC 560
+RGD KL QIL NLV N +KFT++G + +VR K ++ +
Sbjct: 471 -PDMLRGDADKLHQILINLVGNGIKFTNQGSVILTVRCTGHKTKQQEQV----------- 518
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
NLL F++ DTG GIP D+ N++F+ F Q+ T
Sbjct: 519 -------------------------NLL---FQIKDTGIGIPNDEINNVFKAFSQLGTTR 550
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
+ G GLGL I +V +M G+I + + EPG G F F+V
Sbjct: 551 DSNLRGTGLGLVIAAELVEMMGGKICV-ESEPGV-GTTFYFSVRF--------------- 593
Query: 681 PRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTI 738
P +D Q + + +AA IL + E RVL + KVT+
Sbjct: 594 PLDGSDHKQATIPLEDPALLCNAANGRQPLRILLVEDEYINRVLAVTVLEREGWKVTV 651
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 14/128 (10%)
Query: 961 NGK---KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
NG+ + L+VED+ I + VL + G K V NG +A + + K
Sbjct: 618 NGRQPLRILLVEDEYINRVLAVTVLEREGWKVTVAGNGVQALELLDKKC----------- 666
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
+D I+MD +MP +NG+EATR IRK E++ H+PIIA+TA+A+ G K + GMD +++
Sbjct: 667 FDLILMDIQMPELNGYEATRTIRKNEDRTGRHVPIIAMTAYAVKGDREKCLAVGMDGYVS 726
Query: 1078 KPLQKDKL 1085
KP++ D+L
Sbjct: 727 KPIRPDQL 734
>gi|116109353|gb|ABJ74169.1| histidine kinase 1 [Medicago sativa]
Length = 1027
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 110/378 (29%), Positives = 176/378 (46%), Gaps = 39/378 (10%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
M ++AE + K+ LA SH++R + ++G++ + D + E + +
Sbjct: 428 MVLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMNMLM-DTDLDVTQQEYVRTAQGSG 486
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K L+ I+N V++ +KIE+GK+EL F++ ++++V+ ++ KGV++ + D
Sbjct: 487 KALVSIINEVLDQAKIESGKIELEAVLFDIRAIMDDVLSLFSEKSQGKGVELAVYVSDQV 546
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK- 559
+ GD + +QI+ NL+ NS+KFT +GHI V + ++ F I R SK
Sbjct: 547 ---PQQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVFHS--IEVERESTSKD 601
Query: 560 ---CLSKLFF----RNKEGF------DDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQ 606
LS R+ EGF L + S N +L+ V+DTG GIP + Q
Sbjct: 602 AEHTLSGFPVADGRRSWEGFRAFSHEGPLGSFSSTSSN-DLISLIVSVEDTGDGIPLESQ 660
Query: 607 NSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
IF F+QV + G G+GL I + +V LM GEI EP + G F F + T
Sbjct: 661 PMIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVS-EP-KIGSTFTFTAVFT 718
Query: 667 AVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKR 726
C P+++E + N+ P H + F G AA L I R + R
Sbjct: 719 NAC----PNSNELQTQQINNQP----HPATSEFNGMAA--------LVIDPRPVRAEVSR 762
Query: 727 YIENSLNIKVTIVKQEKN 744
Y L ++V IV K
Sbjct: 763 YHRQRLGVRVEIVSDLKQ 780
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 15/131 (11%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L+G+K L+V+D+++ V + L K GA +G EA ++ LR + +D
Sbjct: 896 LSGRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSGIEA-------ITMLRPPHQ---FD 945
Query: 1020 YIMMDCEMPVMNGWEATRLIRK-----EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDF 1074
MD +MP M+G+EATR IR+ ++ + VH+PI+A+TA M + GMD
Sbjct: 946 ACFMDIQMPEMDGFEATRRIREIENNVKDRELFVHLPILAMTADVMQATHQECSKCGMDG 1005
Query: 1075 HLTKPLQKDKL 1085
+++KP + ++L
Sbjct: 1006 YVSKPFEAEQL 1016
>gi|408793550|ref|ZP_11205156.1| PAS domain S-box protein [Leptospira meyeri serovar Hardjo str.
Went 5]
gi|408462054|gb|EKJ85783.1| PAS domain S-box protein [Leptospira meyeri serovar Hardjo str.
Went 5]
Length = 666
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 137/286 (47%), Gaps = 44/286 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E A + +K+ +K +H++R L A+IG ++ +D N L + +
Sbjct: 323 AVEAAINANRSKSVFFSKITHELRTPLHAVIGFSQILEKDPNLPNHLKGYVDSLYENGVH 382
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LLG++N ++++SKIEAGKM E F+L+QL + + M+ + +K + L + S +
Sbjct: 383 LLGMINDILDLSKIEAGKMTETRESFSLSQLWDTLFSMFSYRFSEKSISFEL--LNSSAI 440
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
SC D K++QIL NL+ N++KFTS+G +S+ V
Sbjct: 441 ESCFYESDLQKIRQILVNLLGNALKFTSQGSVSLEIKVT--------------------- 479
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
RN E HS + F V DTG GIP D+ +SIFE F Q E
Sbjct: 480 ----RNPE--------HSFD------MVLFIVKDTGIGIPNDQLHSIFEAFQQT-EQGSS 520
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
++EG GLGL I +V + G I + K +G F F + LT +
Sbjct: 521 YKEGTGLGLSICHQLVEFLGGTIYV--KSTIGKGSEFGFEIPLTRL 564
>gi|238760599|ref|ZP_04621729.1| hypothetical protein yaldo0001_37760 [Yersinia aldovae ATCC 35236]
gi|238701186|gb|EEP93773.1| hypothetical protein yaldo0001_37760 [Yersinia aldovae ATCC 35236]
Length = 1193
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 144/282 (51%), Gaps = 51/282 (18%)
Query: 377 LIKQMNAT-EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED-ANPGTDLAENLG 434
LIK+++A E AE+ + K+ LA SH++R L+AIIGL+EL + +PGT+ E++
Sbjct: 683 LIKELSAARENAEQANRTKSTFLATMSHEIRTPLSAIIGLLELAVTNKGHPGTE--ESIQ 740
Query: 435 LIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL 494
+ + L+G++ +++++KIE+GK+EL E +L V+ ++ + +K +++
Sbjct: 741 VAYESAHTLMGLVGDILDIAKIESGKLELTLEWMKFNELFSPVIPVFMGLARQKHLELT- 799
Query: 495 DPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
CD VL + D ++L QI+ NLVSN++KFT +G + ++
Sbjct: 800 --CDIDVLHPEEIYVDPIRLHQIMFNLVSNAIKFTEQGSVDIQV---------------- 841
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
KCLS G D + E V+DTG GIP+D Q IF +
Sbjct: 842 ----KCLS--------GSD------------QQVMLELVVNDTGVGIPQDDQPQIFSPYK 877
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERG 656
Q A Q G GLGL I +V +M G I + +PG RG
Sbjct: 878 Q--SDAGKKQVGTGLGLSICAQLVSMMGGTIELF-SQPG-RG 915
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
+ I+ DC MPVM+G E T+ +RKE++ V + I+ LTA+A ++ + AGMD L K
Sbjct: 992 ELIITDCSMPVMDGLELTKCLRKEQQ---VPLIILGLTANAQPEERARCLAAGMDDCLFK 1048
Query: 1079 PLQKDKL 1085
PLQ +L
Sbjct: 1049 PLQLSQL 1055
>gi|392378907|ref|YP_004986066.1| putative histidine kinase [Azospirillum brasilense Sp245]
gi|356881274|emb|CCD02259.1| putative histidine kinase [Azospirillum brasilense Sp245]
Length = 979
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 141/295 (47%), Gaps = 53/295 (17%)
Query: 375 AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLG 434
AALI A + AER S+ K+ LA SH++R + +IG + L D G + +
Sbjct: 450 AALIV---AKQAAERASLAKSEFLAMMSHEIRTPINGVIGTLGLIM-DHQMGAEQKRLVS 505
Query: 435 LIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD--V 492
+ R ++DLL ILN ++++SK+EAG++E + +L L+E VVD+ +KG+D V
Sbjct: 506 IARRSAEDLLEILNDILDLSKMEAGRLEFEDSAVHLHDLVESVVDLITPAAQEKGIDIHV 565
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
+DP +VRGD + +QIL NL N++KFT +GHI +
Sbjct: 566 SVDPELPQ-----YVRGDEGRTRQILLNLAGNAVKFTEKGHIRIH--------------- 605
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
LDA + + Q V DTG GIP D+Q+ +F E
Sbjct: 606 ----------------------LDAART---DAAGKQVRVSVLDTGIGIPFDRQHEVFAE 640
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
F Q+ + G GLGL I + +V LM G I + EP + G F F L A
Sbjct: 641 FNQLDRSYARRFGGTGLGLAICKRLVSLMGGTIGFS-SEPAQ-GSTFWFTWPLAA 693
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 21/133 (15%)
Query: 953 GKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKE 1012
G+C + LV ED+A + +L ++G + + NG EA +
Sbjct: 719 GRC-------PRVLVAEDNATNQLIIRTLLERVGCRVDTVANGVEAV------------Q 759
Query: 1013 GKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGM 1072
L +D I MD +MP M+G+EAT IR +D PI+ALTA+A+ + +AGM
Sbjct: 760 AAPLGFDIIFMDLQMPEMDGFEATLRIRSS--SFDRRCPIVALTANALEDARQRCEEAGM 817
Query: 1073 DFHLTKPLQKDKL 1085
D L KP++ L
Sbjct: 818 DGFLLKPVKPQAL 830
>gi|359441190|ref|ZP_09231091.1| hypothetical protein P20429_1455 [Pseudoalteromonas sp. BSi20429]
gi|358036897|dbj|GAA67340.1| hypothetical protein P20429_1455 [Pseudoalteromonas sp. BSi20429]
Length = 1587
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 148/297 (49%), Gaps = 49/297 (16%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
+AE ++ K+ LA SH++R + ++G++EL ++ P + +G+ +T + LLG
Sbjct: 1063 KAEDAAIAKSQFLATMSHEIRTPMNGVLGMLELVQLESLPKP-IETKVGIAKTSAHSLLG 1121
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N +++ SK EAGK+EL E FN L+ EV +KG++++LD L
Sbjct: 1122 VINDILDFSKAEAGKIELEEINFNGRDLIGEVAAAQALTAQEKGIEIILDLV---ALEPS 1178
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
+ GD +++Q+L NL+SN++KFTS+G + V A + K +
Sbjct: 1179 QLCGDPGRIRQVLTNLLSNAVKFTSKGEVVVSAKINKVA--------------------- 1217
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
+G L+F + D+G GI ++KQ +F F QV +
Sbjct: 1218 ----QG----------------LEFVVSIKDSGIGISEEKQQQLFTPFSQVDASTTREYG 1257
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER--PDTDEED 680
G GLGL I + + LM G I++ E G +G F ++LT ++ER P+ + E+
Sbjct: 1258 GSGLGLAICKQLCELMGGAISLT-SEAG-KGSTFTATIMLTPGDQKERYIPNINMEE 1312
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 9/132 (6%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
EK + L+VED+ I +V +L KL + NG+ A D + + +
Sbjct: 1458 EKMQESSQILLVEDNPINQQVAKLMLKKLNCDVTIAGNGQLAID--------ILEAHDSG 1509
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYD-VHIPIIALTAHAMAGVASKIVDAGMDFH 1075
+ ++MDC+MPVM+G+ AT IRK +I IIA+TA+AM + + AGMD +
Sbjct: 1510 YFKLVLMDCQMPVMDGFAATAAIRKGVAGIQHKNIKIIAITANAMNSDKERCITAGMDDY 1569
Query: 1076 LTKPLQKDKLLD 1087
L+KP+Q D L D
Sbjct: 1570 LSKPIQLDILKD 1581
Score = 43.1 bits (100), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 7/127 (5%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LVV+D+ V S L GAK + + EA D + + YD ++D
Sbjct: 1316 LVVDDNETNRIVISQQLEHWGAKVALACDAHEALDMCAQ-----HYKSNNCMYDIAVLDM 1370
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP M+G E + + K E Y +P++ +T+ A A + DAG + KP+ L
Sbjct: 1371 QMPGMDGIELCKAL-KAHEHYK-SMPLVMMTSIAGMEGAQRYSDAGFQAYFPKPVTTADL 1428
Query: 1086 LDVVKSI 1092
+ + I
Sbjct: 1429 ISALSVI 1435
>gi|424056899|ref|ZP_17794416.1| hypothetical protein W9I_00225 [Acinetobacter nosocomialis Ab22222]
gi|407440432|gb|EKF46949.1| hypothetical protein W9I_00225 [Acinetobacter nosocomialis Ab22222]
Length = 935
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 153/357 (42%), Gaps = 76/357 (21%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQ-G 469
Query: 618 ETALGHQ-EGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERER 673
+ ++ HQ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 470 DASVTHQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEI 529
Query: 674 PDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 530 E------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|167621563|ref|YP_001672071.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
gi|167351686|gb|ABZ74412.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
Length = 524
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 138/298 (46%), Gaps = 45/298 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A ++AE + +K+ LA SH++R L AIIG EL + + L I S
Sbjct: 131 IAAKDRAEAGARSKSEFLANMSHELRTPLTAIIGFAELLAREGSLAPQERHWLARIEDAS 190
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K L I+N V++ SK+E G +EL E F L +L+E+ V + +KGV + + DG
Sbjct: 191 KALHSIVNDVLDFSKLEEGAVELESEPFGLRKLVEDTVALLADQAERKGVGLAIFVDDGL 250
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
G +RGD +L+QIL NL+ N++KFT+ G +++R + +D+ A
Sbjct: 251 CDG---LRGDTGRLRQILLNLICNAVKFTNHGGVTIRVS-------EDVGAGGPP----- 295
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
Q F + DTG GIP + +F+ FVQ +
Sbjct: 296 ----------------------------QVRFAISDTGIGIPDAALDQVFQRFVQADGSV 327
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDE 678
G GLGL I + +V LM GEI + + G F F+V L E+P ++
Sbjct: 328 SREFGGTGLGLAICRRLVELMGGEIGVESRVGS--GSTFWFSVALAPAAHVEQPGAED 383
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 12/126 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED ++ S +L +G + ++ NG EA + V + YD ++M
Sbjct: 392 RLLLVEDTEANQELVSTILRSVGVEVDIVSNGAEAVEAV-----------QVCAYDLVLM 440
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM G +AT++IR ++ +PIIALTA+ + + AGM+ HL KP+
Sbjct: 441 DVHMPVMGGVQATQIIRSLGGEF-ATLPIIALTANVLPAQVADYHRAGMNTHLAKPINPR 499
Query: 1084 KLLDVV 1089
++L V+
Sbjct: 500 EMLAVI 505
>gi|242066054|ref|XP_002454316.1| hypothetical protein SORBIDRAFT_04g028550 [Sorghum bicolor]
gi|241934147|gb|EES07292.1| hypothetical protein SORBIDRAFT_04g028550 [Sorghum bicolor]
Length = 973
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 155/333 (46%), Gaps = 46/333 (13%)
Query: 356 LGLFIIL------IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASL 409
LGLF+I IA A R + K QAE + K+ LA SH++R +
Sbjct: 315 LGLFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATVSHEIRTPM 374
Query: 410 AAIIGLVELCHEDANPGTDLA----ENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVE 465
++G++++ GTDL + + C + L+ ++N V++ +KIEAGK+EL
Sbjct: 375 NGVLGMLDMLL-----GTDLTMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEA 429
Query: 466 EEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNS 525
F+L L+++V+ ++ +K +++ + CD V GD + +QIL NLV N+
Sbjct: 430 VPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDV---PKVVLGDPWRFRQILTNLVGNA 486
Query: 526 MKFTSEGHISVRAAVKKKS-------------FKQDIIASNRNVISKCLS---------- 562
+KFT GH+ VR + + S K + S N LS
Sbjct: 487 VKFTERGHVFVRVCLAENSNMEANQVLHGTMNGKDGKVESTTNGAFNTLSGFEAADRRNS 546
Query: 563 ----KLFFRNKEGF-DDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
KL NKE DDL+ +S + + + ++DTG GIP Q+ +F F+Q
Sbjct: 547 WQYFKLLLSNKESLLDDLEGENSNLSDSDHVTLAISIEDTGVGIPLQAQDRVFTPFMQAD 606
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
+ + G G+GL I + + LM G+I+ +
Sbjct: 607 SSTSRNYGGTGIGLSISKCLAELMGGQISFTSR 639
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 33/182 (18%)
Query: 934 GASISSHCSSLQQVAAQSDGKCSEKP------LNGKKFLVVEDDAIVLKVTSAVLGKLGA 987
++I+S L +V + +P L GK LVV+D+ + L+V +A L K GA
Sbjct: 793 ASTIASSIQQLLKVEMPKRKENQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGA 852
Query: 988 KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQ-- 1045
+GK+A + S + MD +MP M+G+EATR IR+ E +
Sbjct: 853 NVSCVESGKDAISLLQPPHS----------FHACFMDVQMPEMDGFEATRQIRQMEMKAN 902
Query: 1046 ---------------YDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
+ +P++A+TA + + + +GMD +++KP +++L VV
Sbjct: 903 EERKNKLSLTEASTFVEYRLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLCQVVS 962
Query: 1091 SI 1092
+
Sbjct: 963 RL 964
>gi|406885458|gb|EKD32650.1| multi-sensor hybrid histidine kinase, partial [uncultured
bacterium]
Length = 537
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 143/286 (50%), Gaps = 55/286 (19%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A ++AE S KT LA SH++R L +I+G E+ E ++ + +I
Sbjct: 301 IKAKDKAEENSRLKTAFLANMSHEIRTPLNSILGFAEMLKEPGISNEEVRDYTNIIDKGG 360
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD---PC 497
K +LGI+N ++++SKIEAG +E+ +FNL + ++++ + H +K + +VL+ P
Sbjct: 361 KRMLGIINDLIDISKIEAGLVEVHPSKFNLNEQIDDIYGFFKHEAEQKEIKIVLNKEMPD 420
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
SV+ S D+ K+ +L NLV+N++KFT +G I +R
Sbjct: 421 KESVICS-----DKEKVTAVLINLVNNALKFTLDGFIEIR-------------------- 455
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
E+ +LL EF V DTG GI +++Q IFE F Q
Sbjct: 456 -----------------------YEKKEDLL--EFCVTDTGIGIKREQQAFIFERFRQAS 490
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
ET + EG GLGL I ++ V ++ G+I + + EP E+G F F +
Sbjct: 491 ETITRNYEGSGLGLSISKAYVEMLGGKIWV-ESEP-EKGSKFYFTI 534
>gi|170720805|ref|YP_001748493.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619]
gi|169758808|gb|ACA72124.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619]
Length = 1201
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 145/295 (49%), Gaps = 49/295 (16%)
Query: 377 LIKQMNATEQ-AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL 435
L++++ +Q A+ + K+ LA SH++R + A+IG++EL + A+ G +L +
Sbjct: 693 LVQELREAKQLADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRAHQGQIDRTSLEV 752
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV--DVV 493
+KDLLG++ ++++ +IE+G + L E +LA L+E V ++ +KG+ DVV
Sbjct: 753 AHHSAKDLLGLIGDILDIVRIESGHLSLAPEPVDLAALVESVSRVFDGQARQKGLAFDVV 812
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
+ P CHV D ++ KQIL NL+SN++KFT +G +
Sbjct: 813 IAPS-----ARCHVLLDPLRFKQILSNLISNAIKFTGQGQVR------------------ 849
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
IS CL + + P+L E EV DTG GI D +F F
Sbjct: 850 ---ISLCLRE---------------EAPSAPPSL---ELEVRDTGIGIHDDDLQRLFNPF 888
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
VQ + G + G GLGL I +S+ +M ++I K + G RF+V L V
Sbjct: 889 VQANPHSQGARAGTGLGLAICRSLCEMMGASLSI--KSVPDFGTQVRFSVPLQRV 941
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K LV++D L + + LG LG +G+E + +EG+ +D I++
Sbjct: 962 KVLVIDDHPANLMLMAQQLGYLGLSQATASDGREGLEKW--------REGQ---FDVIVL 1010
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIP--IIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
DC MP MNG++ +R EE Q + P I+ TA+A V K + GMD L KP+
Sbjct: 1011 DCNMPHMNGYQLAAAVRAEERQ-NGRPPCVILGYTANAQPEVRQKCLSVGMDDCLLKPI 1068
>gi|167646509|ref|YP_001684172.1| histidine kinase [Caulobacter sp. K31]
gi|167348939|gb|ABZ71674.1| histidine kinase [Caulobacter sp. K31]
Length = 698
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 147/312 (47%), Gaps = 56/312 (17%)
Query: 357 GLFIILIAKAAKREMFLC-----AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAA 411
GL + L + RE+ AA+ + A ++AER S+ K+ LA SH++R L
Sbjct: 283 GLALALRVRQVLRELHASEAGQKAAMADVVEARDRAERASLAKSQFLANMSHEIRTPLNG 342
Query: 412 IIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLA 471
++G+ ++ E + G+ E+L +IR + LL ILN V+++SKIEAG+ EL + F+LA
Sbjct: 343 VLGMAQVM-ERSGLGSPHREHLKIIRDSGETLLAILNDVLDLSKIEAGRFELDDHVFDLA 401
Query: 472 QLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE 531
+ + + + +K V V D ++ C GD V+L+Q+L NL SN++KFT E
Sbjct: 402 ETIGAACRPFALLARQKDVAFVKDIAPDALGAWC---GDSVRLRQVLSNLASNAVKFTHE 458
Query: 532 GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFE 591
G I R V S EG
Sbjct: 459 GQI--RLTVGATS-------------------------EG------------------LT 473
Query: 592 FEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651
F + DTG GI D+ S+FE+FVQ + G GLGL I + +V M G + + D
Sbjct: 474 FTLTDTGIGIAPDRIASLFEKFVQADSSTTRRFGGTGLGLAISRELVERMGGTLRM-DSA 532
Query: 652 PGERGVCFRFNV 663
PG +G F F +
Sbjct: 533 PG-KGSTFVFRL 543
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L ED+ + A+L G NG+EA D + A YD I+M
Sbjct: 567 RILAAEDNLTNQFILRALLESAGVDLHTVANGREAVDA-------FHADADAYAYDLILM 619
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D +MPVMNG EA R IR+ E Q+ + PI+AL+A+ M+ + AGMD + KPL
Sbjct: 620 DVQMPVMNGVEAARAIRERESQHSLSPTPILALSANVMSHQLDEYARAGMDGVVAKPLDA 679
Query: 1083 DKLLDVVKS 1091
KL++ + +
Sbjct: 680 GKLIEAIAA 688
>gi|332527792|ref|ZP_08403830.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
JA2]
gi|332112187|gb|EGJ12163.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
JA2]
Length = 1151
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 149/312 (47%), Gaps = 50/312 (16%)
Query: 354 ISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAII 413
+S+G I + +A ++ L L ++++ QAE + K+ LA SH++R + AII
Sbjct: 592 LSVGTDITALKQAEQKLELLNEELARRVD---QAEAATRAKSAFLANMSHEIRTPMNAII 648
Query: 414 GLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473
GL L DA T L E L + ++ LL ++N ++++SKIEAG++ L EF+ +L
Sbjct: 649 GLTHLMARDAA-DTTLRERLHKVDDAARHLLQVINDILDLSKIEAGRLALESVEFSRDEL 707
Query: 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGH 533
+ V+ M +KG+++VLD G + +RGD L Q L NL+ N++KFT G
Sbjct: 708 MHRVLGMVTDAAARKGLELVLD--TGRL--PERLRGDAQHLAQALINLLVNAVKFTDHGW 763
Query: 534 ISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFE 593
+ +R + + A + V+ + FE
Sbjct: 764 VRLRG--------ERVAAEDSRVLVR--------------------------------FE 783
Query: 594 VDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
V DTG GI ++Q +FE F Q + G GLGL + + + LM G+ + D PG
Sbjct: 784 VRDTGIGITAERQARLFEAFEQADTSTTRRYGGTGLGLALTRHLARLMGGDAGV-DSVPG 842
Query: 654 ERGVCFRFNVLL 665
+ G F F+ L
Sbjct: 843 Q-GSSFWFSCWL 853
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 26/160 (16%)
Query: 930 GAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKF 989
GA+A A+ S + LQ C +P + L+ ED+ + +V A+L G
Sbjct: 1000 GAQATAAPSEALTRLQ---------C--RPTR-PRLLLAEDNLVNQEVACALLEDAGIVV 1047
Query: 990 EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVH 1049
EV +G++A + + G +D I+MD +MP +G EATR IR Q
Sbjct: 1048 EVAADGEQAVELALR--------GG---FDIILMDMQMPGTDGLEATRRIRA---QLGDP 1093
Query: 1050 IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+PI+A+TA+A + + AGM+ H+ KP++ L + +
Sbjct: 1094 VPIVAMTANAFDEDRAACLAAGMNDHIAKPVEAMTLYETL 1133
>gi|409197665|ref|ZP_11226328.1| putative two-component system sensor protein [Marinilabilia
salmonicolor JCM 21150]
Length = 1424
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 155/296 (52%), Gaps = 52/296 (17%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I+ A E AE + K+ LA+ SH++R L AIIG L E++ ++ L I+
Sbjct: 760 IELQKAKEAAENATRAKSDFLARMSHEIRTPLNAIIGWTHLGLENSGFRGQ-SDYLKRIQ 818
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
+ S+ LLGI+N +++ SKIEAG++EL +F+L Q+L+ + DM +K +++V D
Sbjct: 819 SSSRSLLGIINDILDFSKIEAGRLELEYIDFDLEQVLQNLADMVLFRANEKNLELVFD-I 877
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK-KKSFKQDIIASNRNV 556
D V + GD ++L+Q+L NLV+N++KFT +GH++V+ ++K +S K +++
Sbjct: 878 DPKV--PLSLVGDPLRLEQVLINLVNNAVKFTDKGHVNVKISLKSSESEKTELL------ 929
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
F V+DTG G+ ++++N++F+ F Q
Sbjct: 930 -----------------------------------FAVEDTGIGLKEEQKNNLFKAFSQA 954
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
+ G GLGL I + + +M GEI + + + G +G F F TA +R+
Sbjct: 955 DVSTTRKYGGSGLGLAICKRITQMMGGEIWV-ESDYG-KGSTFFF----TAFIDRQ 1004
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 12/133 (9%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
E+PL K L+VED+ ++T +L ++ NG+EA D R++
Sbjct: 1167 EEPL---KLLMVEDNDTNRELTRELLAMANITTDLAVNGQEALDLA-------REQEGNC 1216
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
PYD ++MD MP MNG+ ATR +++ E +V P++A+TA A+ V ++ + AGM +
Sbjct: 1217 PYDLVLMDIHMPGMNGYTATRRMKRIEGWNEV--PVVAMTAEALGDVENQCLQAGMTGLV 1274
Query: 1077 TKPLQKDKLLDVV 1089
KP+ D L V+
Sbjct: 1275 AKPIDPDDLFRVI 1287
>gi|291287961|ref|YP_003504777.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
12809]
gi|290885121|gb|ADD68821.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
12809]
Length = 1005
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 139/283 (49%), Gaps = 46/283 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A + AE+ S K+ LA SH++R L IIGL +L D + + I +K
Sbjct: 262 ARDAAEQASKAKSSFLANMSHEIRTPLNGIIGLTKLML-DLELSNKQKDYMRKIDRSAKA 320
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LLGILN V+++SKIEAGK+ + +F + + + D++ +KG+++ + D +
Sbjct: 321 LLGILNDVLDLSKIEAGKLRIDNHDFVFESVFKSIDDLFTIKIEEKGLELFFE-IDPEI- 378
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
H+ GD +++KQ+L NLVSN++KFT EG I ++A V +I S+ +++
Sbjct: 379 -PQHLTGDPLRIKQVLINLVSNAVKFTDEGEIHIKAEV------TEITDSDISIL----- 426
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
F V DTG GIP ++ IF F QV ET+
Sbjct: 427 -----------------------------FSVRDTGVGIPANELEKIFTAFTQVDETSTR 457
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
EG GLGL I +++V +M G + + + G F F + L
Sbjct: 458 RYEGTGLGLAITKNLVSMMGGTVTV--ESDINMGSIFSFKLTL 498
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 77/152 (50%), Gaps = 17/152 (11%)
Query: 938 SSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKE 997
S+ + +VA G + GK L+VED+++ V L K G EV NGK+
Sbjct: 646 SAEAETYNEVAKAYPGN----DIGGKSVLLVEDNSVNRLVAQETLQKFGLTVEVALNGKD 701
Query: 998 AFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTA 1057
A + V K+ YD ++MD MPVM+G+ AT IR+ ++ +PIIALTA
Sbjct: 702 AVEKV-----------KSKKYDAVLMDIHMPVMDGYRATAEIRQIFDKK--QLPIIALTA 748
Query: 1058 HAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
A+ K GM+ HL+KP+ + L V+
Sbjct: 749 DALDTHKEKCFAVGMNDHLSKPINIEILFKVL 780
Score = 40.4 bits (93), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G K LVV+D ++ +L + ++G+ A L+ E K P+
Sbjct: 512 LYGMKTLVVDDKETSREILRKILESWSFEVYTAKDGESALK-----LAQAEHE-KGSPFH 565
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVH--IPIIALTAHAMAGVASKIVDAGMDFHLT 1077
+++D +MP M+G+E IR+ +H I +I +TA+ + +F L+
Sbjct: 566 LVLVDWKMPGMDGFETAEKIREFSRDSGIHDKIIMIMVTAYEKELTEKMSGNDNFNFVLS 625
Query: 1078 KPLQKDKLLDVVKSI 1092
KP+ L D + +I
Sbjct: 626 KPVTPSILFDSIVNI 640
>gi|428217026|ref|YP_007101491.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427988808|gb|AFY69063.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 1584
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 141/281 (50%), Gaps = 18/281 (6%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E A+ ++ K+ LA SH++R L AI+GL +L ++ G + ENL +I +
Sbjct: 1121 AKESADAANIAKSKFLANMSHELRTPLNAILGLTQLMSDEPMLGKEQKENLSIINNSGEH 1180
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V+EMSKIE+GK L + +FNL LL ++ M +K + + C +V
Sbjct: 1181 LLSLINDVLEMSKIESGKAILNQSKFNLHNLLNNLISMLQWRAREKQLQLEF-VCAENV- 1238
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++ D VKL+Q+L NL N++KFT G + + V+ + + I N IS
Sbjct: 1239 -PKYIEADPVKLRQVLINLTGNAIKFTQAGKVILSVWVEPEPPTEIIPTDNEPNISVDPQ 1297
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+ R+ D N L F+V DTG GI + +F F+Q E+ L
Sbjct: 1298 EAANRSNNQLD------------NQLDLWFKVIDTGVGIAPEDLKEVFNPFIQ-SESGLR 1344
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
EG GLGL I + V LM G+I + ++G F FNV
Sbjct: 1345 STEGTGLGLSISREFVRLMGGDITVTST--LDQGTTFSFNV 1383
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 20/138 (14%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED+ + KV +L K+G ++ NG EA ++ LR++ YD ++M
Sbjct: 1450 RILLVEDNLVNQKVAVRMLQKIGYSADIANNGLEA-------IAALRQKD----YDLVLM 1498
Query: 1024 DCEMPVMNGWEATRLIRKE--EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
D +MP M+G EAT I +E E+Q + IIA+TA+AM+ + + +GM H+ KP++
Sbjct: 1499 DVQMPEMDGIEATIAILQEWPEDQQPI---IIAMTANAMSQDRDRCLASGMSDHIAKPIK 1555
Query: 1082 ----KDKLLDVVKSIDET 1095
+ L+ V ID T
Sbjct: 1556 LARLQSTLMTWVNQIDRT 1573
>gi|346226117|ref|ZP_08847259.1| putative two-component system sensor protein [Anaerophaga
thermohalophila DSM 12881]
Length = 1427
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 145/276 (52%), Gaps = 52/276 (18%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGT-DLAENLGLIRTCSKDLLGILNSVMEMSKI 456
LA+ SH++R L AIIG L E + GT + + L I++ S+ LLGI+N +++ SKI
Sbjct: 783 LARMSHEIRTPLNAIIGWTHLALEKS--GTQEQNDYLKRIQSSSRSLLGIINDILDFSKI 840
Query: 457 EAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQ 516
EAG++EL +F+L Q+L+ + DM +KG+++V D L GD ++L+Q
Sbjct: 841 EAGRLELEYIDFDLEQVLQNLADMVLFKANEKGLELVFDIAPDVPLSLV---GDPLRLEQ 897
Query: 517 ILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLD 576
+L NLV+N++KFT +G+++V+ VK S R+ ++ L
Sbjct: 898 VLVNLVNNAVKFTDKGYVNVKIRVK----------STRSEKTELL--------------- 932
Query: 577 ALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQS 636
F V+DTG G+ ++++N++F+ F Q + G GLGL I +
Sbjct: 933 ---------------FAVEDTGIGLKEEQKNNLFKAFSQADVSTTRKYGGSGLGLAICKR 977
Query: 637 MVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
+ +M GEI + + E G +G F F TA +R+
Sbjct: 978 ITQMMNGEIWV-ESEYG-KGSTFFF----TATIDRQ 1007
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 12/148 (8%)
Query: 942 SSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDH 1001
S+ Q+ D +E+PL K L+VED+ +VT +L K +V +G++A D
Sbjct: 1155 SAGQKTGNYRDYLVNERPL---KLLMVEDNDTNRQVTVELLAMANIKTDVVASGQDALDL 1211
Query: 1002 VCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMA 1061
+ +GK PYD I+MD MP MNG+ ATR I++ E +V P++A+TA A+
Sbjct: 1212 AGQ------HKGKC-PYDIILMDIHMPGMNGYTATRRIKRIEGWEEV--PVVAMTAEALG 1262
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
V S+ + AGM + KP+ D L V+
Sbjct: 1263 DVESQCLQAGMTGLVGKPIDPDDLFRVI 1290
>gi|254411326|ref|ZP_05025103.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196181827|gb|EDX76814.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1210
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 150/305 (49%), Gaps = 26/305 (8%)
Query: 359 FIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVEL 418
++I + KR+ A + A AE + K+ LA SH++R L I+G ++
Sbjct: 688 YVIALRDITKRKQ----ADLSLQQAKADAEAANQAKSMFLANMSHELRTPLNIILGFTQV 743
Query: 419 CHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVV 478
D + ENL +I LL ++N V+++SKIEAG + + E F+L L+ +
Sbjct: 744 MSRDPAITPEEQENLDIINKSGNHLLSLINDVLDLSKIEAGCISVEESRFDLIALMRSLQ 803
Query: 479 DMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRA 538
+M+ H KG+ + L+ +++ D KL+Q+L NL+SN++KFT G I++R
Sbjct: 804 EMFQHKARAKGLQLHLNIAADV---PHYIQADSNKLRQVLINLLSNAIKFTQNGSINLRV 860
Query: 539 AVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTG 598
A+ K D + ++I+ S+ + G L A H FEV DTG
Sbjct: 861 ALLKAE-GNDHGSDAEDMITPPSSQ----TRHG-TSLQASH----------LHFEVSDTG 904
Query: 599 KGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVC 658
GI + SIF+ F+Q + + EG GLGL I + V LM G+I ++ + +G
Sbjct: 905 VGIAPTELGSIFDAFIQTHAGKVAN-EGTGLGLAISRKFVQLMGGDIQVSSQ--LNQGST 961
Query: 659 FRFNV 663
F F +
Sbjct: 962 FSFEI 966
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ +V +D ++ +L G + NG+EA + DL I M
Sbjct: 996 RIIVTDDKPENRQILVKLLTFPGLEVREVENGQEALTLWQQWQPDL-----------IWM 1044
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MP+M+G++AT+ IR Q D P IIALTA+A + ++AG + ++TKP Q
Sbjct: 1045 DMRMPIMDGYQATQQIRC---QSDSQTPIIIALTAYASKSDRASALEAGCNDYVTKPFQV 1101
Query: 1083 DKLL 1086
+ L
Sbjct: 1102 ETLF 1105
>gi|358637994|dbj|BAL25291.1| hypothetical protein AZKH_2992 [Azoarcus sp. KH32C]
Length = 744
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 139/293 (47%), Gaps = 49/293 (16%)
Query: 375 AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLG 434
AAL++ A EQAE + + F LA SH++R + AI+G+ EL DA + L
Sbjct: 188 AALVR---AKEQAESANRARGFFLANMSHEIRTPMNAILGMTELAL-DATVEAEPRSYLT 243
Query: 435 LIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL 494
+++ ++ LL I+N V+++SKIEAGK+EL ++ +L +VV + KG++++L
Sbjct: 244 TVKSSAESLLNIINDVLDLSKIEAGKVELESVPMSVRTILNDVVRAFAVSAHGKGLEIML 303
Query: 495 DPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
D + GD +L+QIL NL+ N++KFT G + V+A V +++
Sbjct: 304 DVAPEM---PDRLFGDPTRLRQILANLIGNAIKFTERGEVLVKAWVLRRAGMS------- 353
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
L +F V DTG GI D IF+ F
Sbjct: 354 ---------------------------------LYLQFAVCDTGIGIAADHHEQIFDAFT 380
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
Q + G GLGL I +V L+ G+I + + EPG +G F F V A
Sbjct: 381 QADVSTARRFGGTGLGLAISNQLVKLLDGQIWL-ESEPG-KGTSFYFTVRFAA 431
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 21/140 (15%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+PLN L+VED + + +L K G + V NG+EA + D ++
Sbjct: 596 EPLN---VLLVEDTPVNQTLAVKLLAKAGHRVTVAANGREALERF-----DRQR------ 641
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEE-------EQYDVHIPIIALTAHAMAGVASKIVDA 1070
+D I+MD +MPV++G EAT IR E Q+ I A+TAHAM G + + A
Sbjct: 642 FDLILMDVQMPVLDGMEATTAIRAREMNRSWAMGQHQRVSYIAAMTAHAMEGDRERCLAA 701
Query: 1071 GMDFHLTKPLQKDKLLDVVK 1090
GMD +L+KP+++ L +V+K
Sbjct: 702 GMDDYLSKPIRRKALDEVLK 721
>gi|374996937|ref|YP_004972436.1| signal transduction histidine kinase [Desulfosporosinus orientis
DSM 765]
gi|357215303|gb|AET69921.1| signal transduction histidine kinase [Desulfosporosinus orientis
DSM 765]
Length = 1261
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 143/298 (47%), Gaps = 58/298 (19%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRT 438
A E AE S K+ LA SH++R + AI+GL L + +DL E+ + I
Sbjct: 532 AMEAAEEASQAKSQFLANMSHEIRTPMNAIMGLAHLLAQ-----SDLKESQQNYVAKIEG 586
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
SK LL I+N V++ SKIEAGK+E+ +FNL ++LE V ++Y +KG+D+ D +
Sbjct: 587 ASKTLLRIINDVLDFSKIEAGKLEIENIKFNLDKVLENVANLYSISAAEKGIDLNFDTGE 646
Query: 499 G--SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
G VL GD ++L+Q+L NL++N++KFT+ G ++V V
Sbjct: 647 GVPDVL-----IGDPLRLEQVLSNLITNAIKFTNRGEVNVSVKV---------------- 685
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
+ N + ++ F V DTG GI K+ +F F Q
Sbjct: 686 ------------------------LGENNDEVKLSFTVSDTGIGITKEHIGRLFRAFTQA 721
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +V LM GEI++ + GE G F F V + ++P
Sbjct: 722 DGSMTRKYGGTGLGLTISKQLVELMNGEISV-ESVYGE-GTSFHFIVHFHKALDLKKP 777
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 89/169 (52%), Gaps = 13/169 (7%)
Query: 922 PLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAV 981
P+N+ F A A + + + +++ + L K+ LVVED+ I V +
Sbjct: 891 PINQSLMFDAIMNALNGTALHQGEVIHDEANSRKHRGELADKRVLVVEDNDINQLVAKDM 950
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
L + G + NG+EA +V A + ++MD +MPVM+G++AT ++RK
Sbjct: 951 LEQAGMLVSIANNGEEAIKYV-----------HANKFAAVLMDVQMPVMDGYKATEILRK 999
Query: 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
+ +PIIA+TA+A+ G + + AGM+ +++KP+ ++L D ++
Sbjct: 1000 TYSSSE--LPIIAMTANALRGDRERSIAAGMNDYISKPIDPNRLFDTLE 1046
>gi|350559909|ref|ZP_08928749.1| histidine kinase [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349782177|gb|EGZ36460.1| histidine kinase [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 751
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 136/299 (45%), Gaps = 55/299 (18%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++AE + K+ LA SH++R L AI+G L D+ L E L ++
Sbjct: 281 ARDRAEAANRAKSVFLANMSHELRTPLNAILGFAHLAKHDSGATAQLREYLDFVQRNGAH 340
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD--VVLDPCDGS 500
LL ++N V++ +KIE+G++ L E +L LL++V DM ++G++ V DP
Sbjct: 341 LLSLINDVLDTAKIESGRLTLEESTVDLPSLLDDVADMLRPRANERGLELSVFRDPA--- 397
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
H+R D KL+QIL NL SN++K++ G + + A + Q ++
Sbjct: 398 --LPAHIRSDGRKLQQILINLASNAVKYSDRGEVRIAARSIQPRGGQAVL---------- 445
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
E V D G+GI + IFE F QV
Sbjct: 446 ------------------------------EITVTDQGRGIDDEAIARIFEPFYQVD--G 473
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEE 679
G EG GLGL I + V LM GEI++ + +PG RF V L E+ RPD E+
Sbjct: 474 AGPTEGTGLGLPITRQFVELMGGEISV-ESQPGS---GSRFTVRLP--LEKARPDQIEQ 526
>gi|350563582|ref|ZP_08932403.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium
aerophilum AL3]
gi|349778717|gb|EGZ33068.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium
aerophilum AL3]
Length = 932
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 144/288 (50%), Gaps = 45/288 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++AE + K+ LA SH++R + IIGL EL + NPG + + L + +
Sbjct: 403 ARQEAELANSAKSEFLANMSHEIRTPMNGIIGLSELGMSETNPGK-MRDKLEKVNRSGRL 461
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LLGI+N +++ SKIEAGKM L + F L+ LL+ + ++ H +KG+ +V D +G+
Sbjct: 462 LLGIINDILDFSKIEAGKMSLDPQPFLLSTLLDHLHSLFAHTAEQKGLQLVFD-VEGND- 519
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
G C V D+++L Q+L NL++N++KFTS+G + +R +
Sbjct: 520 GLCIV-ADQLRLHQVLSNLINNAIKFTSQGSVVLRIS----------------------- 555
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
R +G D N FE+ D+G G+ +++ + +F+ F Q +
Sbjct: 556 ----RASKGTD------------NQAWLRFEIADSGIGMTEEQASKLFKAFSQADTSTTR 599
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
G GLGL I Q + LM G I K +G CF F+ L +CE
Sbjct: 600 KYGGTGLGLVISQRLAKLM-GANKIEVKTQFNQGSCFWFD-LPVELCE 645
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 15/124 (12%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+VED+ I V + L K G ++ NG+ A + + + +A +D I+MD
Sbjct: 672 LLVEDNEINQIVAAEQLKKAGLVVDLAENGQIAVE---------KAQNQA--FDLILMDI 720
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MPVM G+EATR IR ++ +PIIALTA AM K + GM HL+KPL +L
Sbjct: 721 QMPVMGGYEATRKIRA----FNAKVPIIALTAAAMIEDREKALAVGMQDHLSKPLNTAEL 776
Query: 1086 LDVV 1089
+ V+
Sbjct: 777 ISVL 780
>gi|153836639|ref|ZP_01989306.1| putative sensory box sensor histidine kinase/response regulator
[Vibrio parahaemolyticus AQ3810]
gi|149749988|gb|EDM60733.1| putative sensory box sensor histidine kinase/response regulator
[Vibrio parahaemolyticus AQ3810]
Length = 873
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 155/313 (49%), Gaps = 65/313 (20%)
Query: 368 KREM--FLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP 425
+REM L +AL K AT+ K+ LA SH++R + AI+G+ E+ E+ N
Sbjct: 354 RREMEKRLSSALDKSKKATQA-------KSEFLANMSHEIRTPMNAIMGISEILLENENR 406
Query: 426 GTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVG 485
+ E L L+ + +L+ I+N +++ SK+EAGK+ LVEEEF+L L+E + +
Sbjct: 407 -REPRELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQA 465
Query: 486 IKKGVDVVLD-PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
KK + +++D P + + V GD+ ++ QIL NL+ N++KFT EGH+ ++
Sbjct: 466 DKKNLKLLVDMPLAMNTV----VVGDKGRINQILLNLIGNAVKFTDEGHVLLKV------ 515
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
R E L F+F V DTG GIP+D
Sbjct: 516 ----------------------RESE-----------------LGFDFSVTDTGIGIPED 536
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
+ I ++F QV +A EG GLGL I + ++ + GE+ + + G CF F++
Sbjct: 537 RLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCV--RSDFGNGSCFSFSLQ 594
Query: 665 LTAVCERERPDTD 677
L +R +P ++
Sbjct: 595 LP---KRSQPHSE 604
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LV ED I + +L G K + +G EA + K L D ++ D
Sbjct: 743 LLVAEDSHINRILIEKMLQDTGVKLTLAEDGVEAVELY-----------KQLSPDLVITD 791
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
MP +G+ T+ IR+ +E + PI+A +AHAM K + GM+ +LTKP+QK
Sbjct: 792 ISMPNKDGFGVTKDIRELQENGEFPWCPIVAFSAHAMQEEQQKSIALGMNDYLTKPVQKS 851
Query: 1084 KLLDVV 1089
LLD++
Sbjct: 852 DLLDMI 857
>gi|260551959|ref|ZP_05825821.1| sensor protein gacS [Acinetobacter sp. RUH2624]
gi|260405362|gb|EEW98857.1| sensor protein gacS [Acinetobacter sp. RUH2624]
Length = 935
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 149/356 (41%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIE 530
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 531 ------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|359434456|ref|ZP_09224720.1| sensor protein [Pseudoalteromonas sp. BSi20652]
gi|357918867|dbj|GAA60969.1| sensor protein [Pseudoalteromonas sp. BSi20652]
Length = 905
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 174/367 (47%), Gaps = 57/367 (15%)
Query: 312 LQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREM 371
L G Q LA N LV RN +L+L LL+L A V +L L ++++ + E
Sbjct: 459 LYFGGQQWTVKLALKEN---YLVQRNTQLTLFLLILQ--AAVCALILIVLMLFNQQQIE- 512
Query: 372 FLCAALIKQMNATEQAERKS----MNKTFALAKASHDVRASLAAIIGLVELCHEDANPGT 427
L + K+ ++ QA+++S K+ LA SH++R L AIIG L H++ N T
Sbjct: 513 -LTRQVAKRTHSLAQAKKQSDLANQAKSQFLANMSHEIRTPLNAIIGFSSLVHKEDNAST 571
Query: 428 DLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIK 487
L L I + SK LL ++N ++++SKIE+ ++ L F+L +++ + +M+ I
Sbjct: 572 -LMGYLNQINSSSKSLLNLINDILDISKIESQRLTLESIPFDLNDVIKRISNMFEQSAIS 630
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
K ++ ++ C+ V GD ++++QIL NL SN++KFT++G I++
Sbjct: 631 KNIEWKVN-CNLPV--DTWFIGDAIRIEQILLNLCSNAIKFTNKGGITL----------- 676
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
N N C N ++ V DTG GI ++ N
Sbjct: 677 -----NINTEFVC------------------------ANNVKIAMSVVDTGIGIKSNQHN 707
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
+F F Q + G GLGL I + + LM G+I + + ++G F F + L
Sbjct: 708 KLFAAFTQADNSTSRRFGGTGLGLTIAKELSQLMGGKITLESEL--DKGSTFTFLIQLET 765
Query: 668 VCERERP 674
+ +++P
Sbjct: 766 IEPQKQP 772
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 13/122 (10%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LV ED+ + V A+LG LG + NG+ A D V K +D ++MDC
Sbjct: 787 LVAEDNPVNQMVIKAMLGSLGIVPYIVENGELAVDIV-----------KKQHFDLVLMDC 835
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP+M+G+ AT LIR+ + + + +PIIALTA M + G + HL KPL+ KL
Sbjct: 836 QMPIMDGYRATALIRQFKTEQE--LPIIALTADVMPEDKAHAQAVGFNQHLAKPLELIKL 893
Query: 1086 LD 1087
+
Sbjct: 894 TE 895
>gi|28900985|ref|NP_800640.1| sensory box sensor histidine kinase/response regulator [Vibrio
parahaemolyticus RIMD 2210633]
gi|260366196|ref|ZP_05778656.1| PAS domain protein [Vibrio parahaemolyticus K5030]
gi|260879838|ref|ZP_05892193.1| putative sensory box sensor histidine kinase/response regulator
[Vibrio parahaemolyticus AN-5034]
gi|260894512|ref|ZP_05903008.1| putative sensory box sensor histidine kinase/response regulator
[Vibrio parahaemolyticus Peru-466]
gi|28809431|dbj|BAC62473.1| putative sensory box sensor histidine kinase/response regulator
[Vibrio parahaemolyticus RIMD 2210633]
gi|308086398|gb|EFO36093.1| putative sensory box sensor histidine kinase/response regulator
[Vibrio parahaemolyticus Peru-466]
gi|308091833|gb|EFO41528.1| putative sensory box sensor histidine kinase/response regulator
[Vibrio parahaemolyticus AN-5034]
gi|308114853|gb|EFO52393.1| PAS domain protein [Vibrio parahaemolyticus K5030]
Length = 873
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 155/313 (49%), Gaps = 65/313 (20%)
Query: 368 KREM--FLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP 425
+REM L +AL K AT+ K+ LA SH++R + AI+G+ E+ E+ N
Sbjct: 354 RREMEKRLSSALDKSKKATQA-------KSEFLANMSHEIRTPMNAIMGISEILLENENR 406
Query: 426 GTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVG 485
+ E L L+ + +L+ I+N +++ SK+EAGK+ LVEEEF+L L+E + +
Sbjct: 407 -REPRELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQA 465
Query: 486 IKKGVDVVLD-PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
KK + +++D P + + V GD+ ++ QIL NL+ N++KFT EGH+ ++
Sbjct: 466 DKKNLKLLVDMPLAMNTV----VVGDKGRINQILLNLIGNAVKFTDEGHVLLKV------ 515
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
R E L F+F V DTG GIP+D
Sbjct: 516 ----------------------RESE-----------------LGFDFSVTDTGIGIPED 536
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
+ I ++F QV +A EG GLGL I + ++ + GE+ + + G CF F++
Sbjct: 537 RLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCV--RSDFGNGSCFSFSLQ 594
Query: 665 LTAVCERERPDTD 677
L +R +P ++
Sbjct: 595 LP---KRSQPHSE 604
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LV ED I + +L G K + +G EA + K L D ++ D
Sbjct: 743 LLVAEDSHINRILIEKMLQDTGVKLTLAEDGVEAVELY-----------KQLSPDLVITD 791
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
MP +G+ T+ IR+ +E + PI+A +AHAM K + GM+ +LTKP+QK
Sbjct: 792 ISMPNKDGFGVTKDIRELQENGEFPWCPIVAFSAHAMQEEQQKSIALGMNDYLTKPVQKS 851
Query: 1084 KLLDVV 1089
LLD++
Sbjct: 852 DLLDMI 857
>gi|425741583|ref|ZP_18859728.1| GHKL domain protein [Acinetobacter baumannii WC-487]
gi|425492148|gb|EKU58418.1| GHKL domain protein [Acinetobacter baumannii WC-487]
Length = 935
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 149/356 (41%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIE 530
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 531 ------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|445439648|ref|ZP_21441773.1| GHKL domain protein [Acinetobacter baumannii OIFC021]
gi|444751880|gb|ELW76578.1| GHKL domain protein [Acinetobacter baumannii OIFC021]
Length = 935
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 149/356 (41%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIE 530
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 531 ------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|407688248|ref|YP_006803421.1| diguanylate cyclase [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|407291628|gb|AFT95940.1| GGDEF domain protein [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 1373
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 163/343 (47%), Gaps = 71/343 (20%)
Query: 348 MFIAGVISLGLFIILI------AKAAKREMFL----------CAALIKQMN----ATEQA 387
++IA ++ + L II + + K++ F+ A+L Q N A EQA
Sbjct: 765 IYIAFLLGIVLLIIYLRTHLQQTEITKQKRFVQALEQQVSEKTASLKAQANDLKKALEQA 824
Query: 388 ERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGIL 447
E + K+ LA SH++R + +IG++ L + +N T+ ++ + + + + LL ++
Sbjct: 825 EEATKLKSEFLANMSHEIRTPMNGVIGMLGLLKK-SNLTTEQSQRVNIASSSANSLLALI 883
Query: 448 NSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHV 507
N +++ SKIEA K+E+ EF++ +L+E + H+ +KG+DVV+D S + +
Sbjct: 884 NDILDFSKIEADKLEIESVEFDVRELIESIAQSVAHLAQEKGLDVVVDL---SKVSESKI 940
Query: 508 RGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFR 567
D +++QIL NL+SN++KFT +G +SV A +++ +N
Sbjct: 941 NSDPSRIQQILTNLLSNAVKFTEQGELSVTA---------ELLPTN-------------- 977
Query: 568 NKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGL 627
N N V DTG GIP K +F+ F QV + G
Sbjct: 978 ----------------NQNTALMHIAVADTGIGIPASKLPHLFDAFTQVDASTTRRYGGT 1021
Query: 628 GLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
GLGL I + + L+ G+I++ E G RF+V CE
Sbjct: 1022 GLGLSITKKLCQLLGGDISVTT----ELGKGSRFDV----TCE 1056
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 75/132 (56%), Gaps = 10/132 (7%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
N + L+VED+AI V + VL G +V NG EA L L+ Y
Sbjct: 1243 NAYRILLVEDNAINQIVATNVLESEGYVVDVANNGVEA-------LELLKSSKLKAYYSA 1295
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVH--IPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
I+MDC+MP M+G+EAT+LIR DV+ +PIIA+TA+AM G + AGMD LTK
Sbjct: 1296 IVMDCQMPEMDGFEATKLIRYGAAG-DVYKRVPIIAMTANAMQGDKDMCMKAGMDDFLTK 1354
Query: 1079 PLQKDKLLDVVK 1090
P++ +K+ ++
Sbjct: 1355 PIEHNKVTSTLQ 1366
>gi|406597307|ref|YP_006748437.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126]
gi|406374628|gb|AFS37883.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126]
Length = 1373
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 146/301 (48%), Gaps = 55/301 (18%)
Query: 374 CAALIKQMN----ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL 429
A+L Q N A EQAE + K+ LA SH++R + +IG++ L + +N T+
Sbjct: 807 TASLKAQANDLKKALEQAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLLKK-SNLTTEQ 865
Query: 430 AENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG 489
++ + + + + LL ++N +++ SKIEA K+E+ EF++ +L+E + H+ +KG
Sbjct: 866 SQRVNIASSSANSLLALINDILDFSKIEADKLEIESVEFDVRELIESIAQSVAHLAQEKG 925
Query: 490 VDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDI 549
+DVV+D S + + D +++QIL NL+SN++KFT +G +SV A ++
Sbjct: 926 LDVVVDL---SKVSESKINSDPSRIQQILTNLLSNAVKFTEQGELSVTA---------EL 973
Query: 550 IASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSI 609
+ +N N N V DTG GIP K +
Sbjct: 974 LPTN------------------------------NQNTALMHIAVADTGIGIPASKLPHL 1003
Query: 610 FEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVC 669
F+ F QV + G GLGL I + + L+ G+I++ E G RF+V C
Sbjct: 1004 FDAFTQVDASTTRRYGGTGLGLSITKKLCQLLGGDISVTT----ELGKGSRFDV----TC 1055
Query: 670 E 670
E
Sbjct: 1056 E 1056
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 74/132 (56%), Gaps = 10/132 (7%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
N + L+VED+AI V + VL G +V NG EA L L+ Y
Sbjct: 1243 NAYRILLVEDNAINQIVATNVLESEGYVVDVANNGVEA-------LELLKSSKLKAHYSA 1295
Query: 1021 IMMDCEMPVMNGWEATRLIR--KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
I+MDC+MP M+G+EAT+LIR E Y +PIIA+TA+AM G + AGMD LTK
Sbjct: 1296 IVMDCQMPEMDGFEATKLIRYGAAGEVYK-RVPIIAMTANAMQGDKDMCMKAGMDDFLTK 1354
Query: 1079 PLQKDKLLDVVK 1090
P++ +K+ ++
Sbjct: 1355 PIEHNKVTSTLQ 1366
>gi|436841838|ref|YP_007326216.1| Cache sensor hybrid histidine kinase [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432170744|emb|CCO24115.1| Cache sensor hybrid histidine kinase [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 752
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 140/293 (47%), Gaps = 48/293 (16%)
Query: 372 FLCAALIKQMNAT-EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA 430
F A+ ++++ T E+A +M K LA SH++R + I+G +L ++A P D
Sbjct: 356 FSGWAIARKLDGTKEKAIAANMAKNQFLAVMSHEIRTPMNVILGAADLL-KNAGPREDQK 414
Query: 431 ENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV 490
+ + L+ LL ++N ++++SKIEAG ++L FN +L++ ++ KKG+
Sbjct: 415 DFIKLLENAGDGLLDLINDILDISKIEAGLLDLESVSFNPCMVLKQTFKVFAIAADKKGI 474
Query: 491 DVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDII 550
+ D V GD V+LKQ+L NL+ N++KFTS G + V A I
Sbjct: 475 QFEMQVADNF---PARVTGDPVRLKQVLINLLDNAVKFTSNGGVYVHARS---------I 522
Query: 551 ASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIF 610
S RN N++ EF V DTG G+P+++ SIF
Sbjct: 523 VSGRN------------------------------NMITLEFSVRDTGIGVPEEQHKSIF 552
Query: 611 EEFVQVKETAL--GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
E F Q + A +G GLGL I +S+ +M G+I I K + G F F
Sbjct: 553 ESFTQAGKPAPRKNQGKGTGLGLAISKSLSIMMGGDITI--KSSPDNGSTFIF 603
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 947 VAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKIL 1006
V+ + G + + + KK L+VED+ + + + L E NGKE ++
Sbjct: 615 VSGKRGGCDASETITPKKILLVEDNKSNMLLFAYFLEGSMHSMENASNGKEGVKAFIEMK 674
Query: 1007 SDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVAS 1065
D+ + MD EMPVMNG+EATR IR+ E + +PIIAL+A+ M G +
Sbjct: 675 PDI-----------VFMDIEMPVMNGYEATRKIREWEAKNSTSQVPIIALSANTMKGTEA 723
Query: 1066 KIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094
+ +AG ++TKP+ K +LL+ ++ +E
Sbjct: 724 AVYEAGCTGYMTKPVTKLQLLERIERDEE 752
>gi|434398554|ref|YP_007132558.1| histidine kinase [Stanieria cyanosphaera PCC 7437]
gi|428269651|gb|AFZ35592.1| histidine kinase [Stanieria cyanosphaera PCC 7437]
Length = 811
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 139/285 (48%), Gaps = 44/285 (15%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
++AE + K+ LA SH++R L AI+G +L D + E+L +I + LL
Sbjct: 336 KEAETANRAKSLFLANMSHELRTPLNAILGFAQLMERDERLTSSQQESLAIINRSGEHLL 395
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD---VVLDPCDGSV 501
++N V+EMSKIEAG++ + +E F+L QLL+ + +M+ K + V+ +
Sbjct: 396 NLINDVLEMSKIEAGRIVMNQESFDLHQLLQTIREMFQFRAESKQLSFNFVLASDVPQYI 455
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+ C KL+Q+L NL+SN++KFT++G +++R ++A+
Sbjct: 456 VSDCR------KLRQVLINLLSNAIKFTAQGGVTLRVT--------SVVAT--------- 492
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
A +VE + FEV DTGKGI ++ +F FVQ T +
Sbjct: 493 ---------------ASLTVESATKPITIYFEVTDTGKGIAPEELKQLFHPFVQTA-TGI 536
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
+ G GLGL I V LM G+I A + GE G F F + T
Sbjct: 537 ESEGGTGLGLSISSQFVELMGGKIE-AKSKIGE-GSSFSFYIQAT 579
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D K+ +L +G + + +NG+EA +A I M
Sbjct: 605 RILVVDDQEANCKLLEKLLQTVGFQTRIAQNGQEAI-----------AIWQAWQPHLIWM 653
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MPVM+G+ AT I+ +Q+D + IIALTA A +KI+ AG D + KP Q+
Sbjct: 654 DMRMPVMDGYTATEKIK---QQHDCNTVIIALTASAFEEQRAKILTAGCDDFVRKPFQE 709
>gi|262280993|ref|ZP_06058776.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202]
gi|262257893|gb|EEY76628.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202]
Length = 935
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 150/356 (42%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLNNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFVV------- 523
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
D D E H HF E Q++ ++A VL+ Y+EN
Sbjct: 524 DEDYEIE-----------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLSEYRARPLYQPLSRSGLIQLLSNQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNLIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|436840344|ref|YP_007324722.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
gi|432169250|emb|CCO22618.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
Length = 717
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 148/309 (47%), Gaps = 61/309 (19%)
Query: 363 IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED 422
I + + E+ LC A + AE S K+ LA SH++R ++AIIG+ E+
Sbjct: 323 ITERKRGEVELC-------EAKDAAEEASRAKSEFLANMSHEIRTPISAIIGMSEMT--- 372
Query: 423 ANPGTDLA-ENLGLIRTCSK---DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVV 478
TDL+ E G + T K LL I+N ++++SKIEA KMEL E+FNL ++L++ +
Sbjct: 373 --LNTDLSSEQQGYLVTVKKAAESLLHIINDILDISKIEARKMELRPEDFNLHEMLDKQL 430
Query: 479 DMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRA 538
+ +KG++ L G + C+ GD +L QI+ NLV NS+KFT +G++ +
Sbjct: 431 SVLRVQAEEKGIE--LRSSIGDQVSRCY-HGDEYRLGQIIINLVGNSIKFTEKGYVEILV 487
Query: 539 AVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTG 598
S+++ I EF+V DTG
Sbjct: 488 E-HSGSYEEGAI---------------------------------------LEFKVKDTG 507
Query: 599 KGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVC 658
GI +DK +FE FVQ+ G GLGL I + +V +M G+I + KE G
Sbjct: 508 IGISEDKAEKLFESFVQLNAGYSKRHPGSGLGLAISRQLVEMMGGQITFSSKEGW--GTE 565
Query: 659 FRFNVLLTA 667
FRF V L +
Sbjct: 566 FRFTVKLKS 574
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 17/156 (10%)
Query: 938 SSHCSSLQQVAA-QSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGK 996
SS ++++++ SDG K + L+ ED+A S L + G + E NG
Sbjct: 574 SSEGDCVEELSSLNSDGNGERKV--AARILLAEDNATNQVYISHFLTEEGFQVETAENGL 631
Query: 997 EAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALT 1056
EA + + K G P+D I+MD +MP M+G EAT+ IR + IPIIALT
Sbjct: 632 EALEML--------KSGG--PFDLILMDVQMPEMDGLEATKKIRDSGDD----IPIIALT 677
Query: 1057 AHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
A+AM G K + +GMD + +KP++ D+L ++ +
Sbjct: 678 AYAMEGDREKFLKSGMDAYSSKPVKIDELTKLINKL 713
>gi|162459625|ref|NP_001104859.1| histidine kinase 1 [Zea mays]
gi|12060392|dbj|BAB20583.1| histidine kinase 1 [Zea mays]
Length = 974
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 161/348 (46%), Gaps = 48/348 (13%)
Query: 356 LGLFIIL------IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASL 409
LG F+I IA A R + K QAE + K+ LA ASH++R +
Sbjct: 316 LGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPM 375
Query: 410 AAIIGLVELCHEDANPGTDLA----ENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVE 465
++G++++ GTDL + + C + L+ ++N V++ +KIEAGK+EL
Sbjct: 376 NGVLGMLDMLL-----GTDLTMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEA 430
Query: 466 EEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNS 525
F+L L+++VV ++ +K +++ + CD V GD + +QIL NLV N+
Sbjct: 431 VPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNV---PKVVIGDPWRFRQILTNLVGNA 487
Query: 526 MKFTSEGHISVRAAVKKKS-------------FKQDIIASNRNVISKCLS---------- 562
+KFT GH+ VR + + S K + S N LS
Sbjct: 488 VKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNS 547
Query: 563 ----KLFFRNKEG-FDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
KL +KE DDL++ +S + + + + ++DTG GIP Q+ +F F+Q
Sbjct: 548 WQYFKLLLSDKESLLDDLESENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQAD 607
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ + G G+GL I + + LM G+I+ G F F+ L
Sbjct: 608 SSTSRNYGGTGIGLSISKCLAELMGGQISFTSHP--SVGSTFTFSATL 653
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 40/183 (21%)
Query: 938 SSHCSSLQQ-----VAAQSDGKCSEKP------LNGKKFLVVEDDAIVLKVTSAVLGKLG 986
S+ SS+QQ +A + D + +P L GK LVV+D+ + L+V +A L K G
Sbjct: 795 STIASSIQQLLKVEIAERKDNQ--NRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYG 852
Query: 987 AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE--- 1043
A +GK+A +S L+ + +D MD +MP M+G+EAT IR+ E
Sbjct: 853 ANVSCVESGKDA-------ISLLQPPHR---FDACFMDVQMPEMDGFEATGQIRQMELKA 902
Query: 1044 --------------EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ H+P++A+TA + + + +GMD +++KP +++L V
Sbjct: 903 NEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 962
Query: 1090 KSI 1092
+
Sbjct: 963 SRL 965
>gi|291568909|dbj|BAI91181.1| two-component hybrid histidine kinase [Arthrospira platensis
NIES-39]
Length = 933
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 158/335 (47%), Gaps = 55/335 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE + KT L SH++R L AI+G +L + N NL +I+
Sbjct: 441 VRAKEVAEAANQAKTTFLTNMSHELRTPLNAILGFTQLLNYGDNLTEHQHNNLNIIQRSG 500
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL ++N ++++SKIEAG++ + +++F+L ++L+E+ D++ +K ++ LD C S
Sbjct: 501 EHLLSLINDILDLSKIEAGRVTVSDDDFDLWRMLDEIKDLFSLKASQK--NLYLD-CVYS 557
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
++RGDR+KL+QI+ NL+ N++KFT +G + +I ++ IS
Sbjct: 558 PDLPRYIRGDRLKLRQIMINLIGNAIKFTEQGRV--------------VITADHKFISS- 602
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+P + + V D+G G+ ++ ++E F Q +
Sbjct: 603 -----------------------SPPICCLQIAVTDSGVGMTPEEIAQLYEPFFQA-QAG 638
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
+ QEG GLGL I Q + LM EI + E G G F+F + + E +
Sbjct: 639 IDSQEGTGLGLTICQKYLQLMGAEIEVI-SEVG-HGTTFKFKLKVV---------VSEYN 687
Query: 681 PRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFI 715
PR N P Q + S EG Q IL +
Sbjct: 688 PRAKNLKPSPKPQQ--LDYNHSENNREGEQRILIV 720
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 18/147 (12%)
Query: 950 QSDGKCSEKPLNG-KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSD 1008
Q D SE G ++ L+VED++ ++ +L LG + + +G+EA I +
Sbjct: 701 QLDYNHSENNREGEQRILIVEDNSDNQQLLYQILSPLGFQIQQATDGEEAI----AIWQN 756
Query: 1009 LRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDV------HIPIIALTAHAMAG 1062
R P+ I MD +P+++G+E TR IR++E+ + IIALTA A
Sbjct: 757 FR------PH-LIWMDLRIPLIDGYEVTREIRRQEKSLGISPNSQDKTIIIALTASAFVE 809
Query: 1063 VASKIVDAGMDFHLTKPLQKDKLLDVV 1089
S+ ++AG D + KP++ K++ +
Sbjct: 810 ERSEAIEAGCDEFVHKPIEVPKIMTYI 836
>gi|71905874|ref|YP_283461.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase A, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71845495|gb|AAZ44991.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal
[Dechloromonas aromatica RCB]
Length = 738
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 136/286 (47%), Gaps = 47/286 (16%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
AE ++ K+ LA SH++R + I+G+ +L + + E + I + LL +
Sbjct: 344 AEAANLAKSSFLATMSHEIRTPMNGILGMAQLLLMSGSAEDERHEYVRTILNSGQTLLSL 403
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH 506
LN ++++SK+EAGK+EL F ++EEVV +++ KG+ + +V
Sbjct: 404 LNDILDISKVEAGKLELKPAVFAPQGVIEEVVGLFFAQAEAKGLSITAQWHGPAV---QR 460
Query: 507 VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFF 566
R D+++L+QIL NL+SN++KFT EG I + A
Sbjct: 461 YRADQIRLRQILTNLLSNAVKFTKEGAIRIEA---------------------------- 492
Query: 567 RNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEG 626
+ER + EF V D+G GI +K+ +F+ F Q+ +A G
Sbjct: 493 ------------REIEREDGWARLEFAVIDSGIGIAPEKRALLFKPFSQLDSSATRQYGG 540
Query: 627 LGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
GLGL IV+S+ LM GE + + +PG+ RF V + A C E
Sbjct: 541 TGLGLSIVRSLAELMGGEAGV-ESQPGQ---GARFWVRIRAECLHE 582
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 11/129 (8%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+P LVVED+ KV A+L KL + + NG+ A D + + +
Sbjct: 600 EPAISGHVLVVEDNPTNRKVIEAMLRKLHIRSDSVDNGRAAVDTLEQ----------GMR 649
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHL 1076
D ++MD +MPVM+G +AT LIR+ E + + +PI+ALTA A + AGMD +
Sbjct: 650 PDLVLMDVQMPVMDGIQATMLIRQREAETGLPRLPIVALTAGAFDEDRQHCLVAGMDDFM 709
Query: 1077 TKPLQKDKL 1085
+KP+ + L
Sbjct: 710 SKPVNLNDL 718
>gi|237653493|ref|YP_002889807.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
gi|237624740|gb|ACR01430.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
Length = 1407
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 131/273 (47%), Gaps = 49/273 (17%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDA-NPGTDLAENLGLIRTCSKDLLGILNSVME 452
K+ LA SH++R + AIIGL L +D P D L I + LLG++N +++
Sbjct: 784 KSAFLANMSHEIRTPMNAIIGLTHLLRKDGVTPQQD--GRLEQIEASGRHLLGLINDILD 841
Query: 453 MSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRV 512
+SKIEAGK++L E+F+L+ +L+ V + KG+ + L DG + + +RGD +
Sbjct: 842 LSKIEAGKLDLALEDFHLSAVLDHVASLIRPSAQSKGLHIEL---DGDAVPTW-LRGDPM 897
Query: 513 KLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGF 572
+L+Q L NL N++KFT G I +RA KL EG
Sbjct: 898 RLRQCLFNLAGNAVKFTERGSIVLRA------------------------KLLKDGAEG- 932
Query: 573 DDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632
LQ FEV+DTG G+ + +F F Q + G GLGL
Sbjct: 933 ---------------LQVRFEVEDTGIGVTPAQGQRLFHVFQQAEVGTTRKYGGTGLGLA 977
Query: 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ +++ +M GE + D PGE G F F VLL
Sbjct: 978 LTRNLAQMMGGEAGM-DSIPGE-GSTFWFTVLL 1008
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G + L+VED+ I V +L +G E +G EA + V KA Y I
Sbjct: 1035 GTRVLLVEDNPINRLVALELLHAVGLTVETAEDGAEALERV-----------KAADYALI 1083
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MD +MPVM+G +ATR IR D PI+A+TA+A V+AGM+ + KP++
Sbjct: 1084 LMDMQMPVMDGLDATRAIRALPGWRDK--PILAMTANAFDDDRRTCVEAGMNDFIAKPVE 1141
Query: 1082 KDKL 1085
++L
Sbjct: 1142 PERL 1145
>gi|193076366|gb|ABO11027.2| GacS-like sensor kinase protein [Acinetobacter baumannii ATCC
17978]
Length = 935
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 149/356 (41%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIE 530
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 531 ------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|409993211|ref|ZP_11276361.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
gi|409935925|gb|EKN77439.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
Length = 948
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 158/335 (47%), Gaps = 55/335 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE + KT L SH++R L AI+G +L + N NL +I+
Sbjct: 456 VRAKEVAEAANQAKTTFLTNMSHELRTPLNAILGFTQLLNYGDNLTEHQHNNLNIIQRSG 515
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL ++N ++++SKIEAG++ + +++F+L ++L+E+ D++ +K ++ LD C S
Sbjct: 516 EHLLSLINDILDLSKIEAGRVTVSDDDFDLWRMLDEIKDLFSLKASQK--NLYLD-CVYS 572
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
++RGDR+KL+QI+ NL+ N++KFT +G + +I ++ IS
Sbjct: 573 PDLPRYIRGDRLKLRQIMINLIGNAIKFTEQGRV--------------VITADHKFISS- 617
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+P + + V D+G G+ ++ ++E F Q +
Sbjct: 618 -----------------------SPPICCLQIAVTDSGVGMTPEEIAQLYEPFFQA-QAG 653
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
+ QEG GLGL I Q + LM EI + E G G F+F + + E +
Sbjct: 654 IDSQEGTGLGLTICQKYLQLMGAEIEVI-SEVG-HGTTFKFKLKVV---------VSEYN 702
Query: 681 PRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFI 715
PR N P Q + S EG Q IL +
Sbjct: 703 PRAKNLKPSPKPQQ--LDYNHSENNREGEQRILIV 735
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 18/147 (12%)
Query: 950 QSDGKCSEKPLNG-KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSD 1008
Q D SE G ++ L+VED++ ++ +L LG + + +G+EA I +
Sbjct: 716 QLDYNHSENNREGEQRILIVEDNSDNQQLLYQILSPLGFQIQQATDGEEAI----AIWQN 771
Query: 1009 LRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDV------HIPIIALTAHAMAG 1062
R P+ I MD +P+++G+E TR IR++E+ + IIALTA A
Sbjct: 772 FR------PH-LIWMDLRIPLIDGYEVTREIRRQEKSLGISPNSQDKTIIIALTASAFVE 824
Query: 1063 VASKIVDAGMDFHLTKPLQKDKLLDVV 1089
S+ ++AG D + KP++ K++ +
Sbjct: 825 ERSEAIEAGCDEFVHKPIEVPKIMTYI 851
>gi|407684320|ref|YP_006799494.1| diguanylate cyclase [Alteromonas macleodii str. 'English Channel
673']
gi|407245931|gb|AFT75117.1| GGDEF domain protein [Alteromonas macleodii str. 'English Channel
673']
Length = 1373
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 146/301 (48%), Gaps = 55/301 (18%)
Query: 374 CAALIKQMN----ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL 429
A+L Q N A EQAE + K+ LA SH++R + +IG++ L + +N T+
Sbjct: 807 TASLKAQANDLKKALEQAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLLKK-SNLTTEQ 865
Query: 430 AENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG 489
++ + + + + LL ++N +++ SKIEA K+E+ EF++ +L+E + H+ +KG
Sbjct: 866 SQRVNIASSSANSLLALINDILDFSKIEADKLEIESVEFDVRELIESIAQSVAHLAQEKG 925
Query: 490 VDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDI 549
+DVV+D S + + D +++QIL NL+SN++KFT +G +SV A ++
Sbjct: 926 LDVVVDL---SKVSESKINSDPSRIQQILTNLLSNAVKFTEQGELSVTA---------EL 973
Query: 550 IASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSI 609
+ +N N N V DTG GIP K +
Sbjct: 974 LPTN------------------------------NQNTALMHIAVADTGIGIPASKLPHL 1003
Query: 610 FEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVC 669
F+ F QV + G GLGL I + + L+ G+I++ E G RF+V C
Sbjct: 1004 FDAFTQVDASTTRRYGGTGLGLSITKKLCQLLGGDISVTT----ELGKGSRFDV----TC 1055
Query: 670 E 670
E
Sbjct: 1056 E 1056
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 945 QQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCK 1004
Q V + + S N + L+VED+AI V + VL G +V NG EA
Sbjct: 1227 QHVQSPEENAKSTSDDNAYRILLVEDNAINQIVATNVLESEGYVVDVANNGVEA------ 1280
Query: 1005 ILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR--KEEEQYDVHIPIIALTAHAMAG 1062
L L+ Y I+MDC+MP M+G+EAT+LIR E Y +PIIA+TA+AM G
Sbjct: 1281 -LELLKSSKLKAHYSAIVMDCQMPEMDGFEATKLIRYGAAGEVYK-RVPIIAMTANAMQG 1338
Query: 1063 VASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
+ AGMD LTKP++ +K+ ++
Sbjct: 1339 DKDMCMKAGMDDFLTKPIEHNKVTSTLQ 1366
>gi|406953060|gb|EKD82452.1| PAS/PAC sensor hybrid histidine kinase, partial [uncultured
bacterium]
Length = 483
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 143/293 (48%), Gaps = 54/293 (18%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL----AENLGLIRTCSK 441
+A++ S K+ LA SH++R + I+G++EL T L E GLI S+
Sbjct: 4 RAQQASQAKSEFLANMSHEIRTPMNGILGMLELLM-----ATSLDHRQREFAGLIYRSSQ 58
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LLGILN+V+++SKIEAGK+ L E NL +LLEEVV + + KK ++++L +
Sbjct: 59 SLLGILNAVLDLSKIEAGKIVLERESINLRRLLEEVVGLMQPLAEKKKIEIILKYPPAA- 117
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+ D +L+QIL NL+SN++KFT EG +S+ A + C
Sbjct: 118 --PEQIITDGGRLRQILINLLSNAVKFTEEGFVSLEIAT-----------------TTCE 158
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
NK G F+F V DTG G+ + Q +FE+F Q +
Sbjct: 159 D-----NKSGV-----------------FKFSVKDTGIGMSTEHQELVFEKFSQADSSIT 196
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
G GLGL I Q ++ +M GEI + + G RF+ L +C+ +P
Sbjct: 197 RRFGGTGLGLTICQELIKIMGGEITLESAQG--LGTKVRFS-LKFELCQDSQP 246
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 13/96 (13%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G K LVVED+ I +V +L LG + +G A +++ +I +D +
Sbjct: 401 GFKVLVVEDNDINQEVAKGILEMLGCTVTLAGSGAIALEYLNQI-----------DFDLV 449
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTA 1057
++DC+MP M+G+E + IR EE+ D +P+IA+TA
Sbjct: 450 LLDCQMPEMDGFEVVKRIRSEEKHKD--LPVIAMTA 483
>gi|421789462|ref|ZP_16225720.1| GHKL domain protein [Acinetobacter baumannii Naval-82]
gi|410398593|gb|EKP50804.1| GHKL domain protein [Acinetobacter baumannii Naval-82]
Length = 935
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 149/356 (41%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIE 530
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 531 ------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|156978233|ref|YP_001449139.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
gi|156529827|gb|ABU74912.1| hypothetical protein VIBHAR_07038 [Vibrio harveyi ATCC BAA-1116]
Length = 641
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 165/365 (45%), Gaps = 55/365 (15%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A ++AE + K+ LA SH++R + IIG+ L D + + +I + S
Sbjct: 232 QARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLLG-DTKLDEQQKDFVSIINSSSN 290
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
L+ I++ +++ SKIEAGK+EL +NL LL EV ++ +KG+ +V CD
Sbjct: 291 SLMVIIDDILDFSKIEAGKIELEATTYNLLDLLHEVGRLHTVKAQQKGLQLV---CDIDP 347
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
V+GD +LKQ+L NL+SN++KFT GH+ + ++
Sbjct: 348 QLPLEVKGDMGRLKQVLSNLLSNAVKFTERGHVKLMVSL--------------------- 386
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
V R ++ F V D+G GI K+ Q ++FE+F Q +
Sbjct: 387 -------------------VSRKTDIASVHFRVVDSGIGIAKENQQTVFEKFQQADGSTT 427
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDP 681
G GLGL I S+V +M GEI + EPG G F F + L VC++ P
Sbjct: 428 RKYGGTGLGLAICNSLVEVMGGEIRLT-SEPG-LGSYFEFTIPLNIVCDKSI------SP 479
Query: 682 RTHN--DWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIV 739
+T N D+P G+ + K G IL + + + R + L ++V +
Sbjct: 480 QTPNVFDFP-NGMSDAIVAEHIQTTKDVGKPWILVVEDTAVNQKVVRMMLEKLGMQVNVA 538
Query: 740 KQEKN 744
+ K+
Sbjct: 539 EHGKD 543
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 13/125 (10%)
Query: 962 GKKF-LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
GK + LVVED A+ KV +L KLG + V +GK+A ++ + +D
Sbjct: 507 GKPWILVVEDTAVNQKVVRMMLEKLGMQVNVAEHGKDAL-----------RQCQTHQFDL 555
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MDC+MPVM+G+ AT IRK E + +PIIAL+A+ + + DAGM+ + KP+
Sbjct: 556 ILMDCQMPVMDGFIATENIRKMGE-WGQQVPIIALSANVIKEAQQRCFDAGMNEFVAKPV 614
Query: 1081 QKDKL 1085
K++L
Sbjct: 615 TKERL 619
>gi|403673172|ref|ZP_10935475.1| barA [Acinetobacter sp. NCTC 10304]
Length = 935
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 149/356 (41%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIE 530
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 531 ------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|169634358|ref|YP_001708094.1| GacS-like sensor kinase protein [Acinetobacter baumannii SDF]
gi|169153150|emb|CAP02235.1| GacS-like sensor kinase protein [Acinetobacter baumannii]
Length = 935
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 149/356 (41%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIE 530
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 531 ------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|445486226|ref|ZP_21457284.1| GHKL domain protein [Acinetobacter baumannii AA-014]
gi|444769711|gb|ELW93879.1| GHKL domain protein [Acinetobacter baumannii AA-014]
Length = 935
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 149/356 (41%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIE 530
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 531 ------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|428319274|ref|YP_007117156.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428242954|gb|AFZ08740.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1566
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 152/320 (47%), Gaps = 52/320 (16%)
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
L A+ ++ M L + + E AE + K+ LA SH++R L AI+G ++
Sbjct: 1068 LFARTQRQSMEL-------IKSKENAEVANRAKSQFLASMSHELRTPLNAILGFSQVMAR 1120
Query: 422 DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481
+++ + E + +I + LL ++N V+ MSKIEAG++ + FNL LL + +M
Sbjct: 1121 NSSITEEQKEYIEIINRSGEHLLELINDVLSMSKIEAGQITINPSRFNLYNLLNSLKEML 1180
Query: 482 YHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541
KG+ ++ + D +++ D KL+Q+L NLV N++KFT +G +++R + +
Sbjct: 1181 QLKANSKGLHLIFENADDL---PQYIQTDEAKLRQVLINLVGNAIKFTQQGTVTLRVSSQ 1237
Query: 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGI 601
++D N++ Q FE+ DTG GI
Sbjct: 1238 A---EKDATEENKS---------------------------------QLYFEISDTGPGI 1261
Query: 602 PKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
+ ++F+ F+Q ET +G GLGL I Q V +M GEIA+ K +G F F
Sbjct: 1262 SPLELATLFKPFIQT-ETGRKSMQGTGLGLPISQQFVRIMGGEIAV--KSQLGQGTIFSF 1318
Query: 662 NVLLTAVCERERPDTDEEDP 681
N+ + V E D E+ P
Sbjct: 1319 NIWVDLVTE---SDEQEKSP 1335
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 13/127 (10%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L+++D L+ S +L K G K + +G+ A + +L DL I++D
Sbjct: 10 ILIIDDQPQNLRFISNILTKEGYKVQRAISGEMAVNANLTVLPDL-----------ILLD 58
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
MP MNG+E ++ E+ + IP+I L+ K + G ++TKP Q ++
Sbjct: 59 IAMPKMNGYEVCTRLKANEKMRE--IPVIFLSVFDETFHKVKAFEVGGVDYITKPFQVEE 116
Query: 1085 LLDVVKS 1091
+L ++S
Sbjct: 117 VLVRIES 123
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MD MPVM+G+EATR I+K E + IIALTA A I+ AG + + KP
Sbjct: 1396 ILMDMLMPVMDGYEATRQIKKTLEGRET--IIIALTASAFDEQRQIILSAGCNDLICKPF 1453
Query: 1081 QKDKLLDVV 1089
+++ L + +
Sbjct: 1454 REEVLFEKI 1462
>gi|424743166|ref|ZP_18171479.1| GHKL domain protein [Acinetobacter baumannii WC-141]
gi|422943427|gb|EKU38443.1| GHKL domain protein [Acinetobacter baumannii WC-141]
Length = 935
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 150/356 (42%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLNNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFVV------- 523
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
D D E H HF E Q++ ++A VL+ Y+EN
Sbjct: 524 DEDYEIE-----------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 91/170 (53%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q + Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLSEYRARPLYQPLSRSGLIQLLNDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNLIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|71909695|ref|YP_287282.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase, HAMP region:histidine
kinase A, N-terminal, partial [Dechloromonas aromatica
RCB]
gi|71849316|gb|AAZ48812.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase, HAMP region:Histidine
kinase A, N-terminal [Dechloromonas aromatica RCB]
Length = 631
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 144/303 (47%), Gaps = 54/303 (17%)
Query: 367 AKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPG 426
A+R + L A+ +Q AE + KT LA SH++R + I+G+ EL
Sbjct: 232 AERILELTASRDEQARLARSAETAARAKTSFLATMSHEIRTPMNGILGMTELTL-----A 286
Query: 427 TDLAEN----LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY 482
TDL E L +++ +L+ +LN +++ SKI AG++ L +L+ LL+ VV +Y
Sbjct: 287 TDLTEEQREYLTWVKSSGDNLMRVLNDILDFSKINAGELNLEHIPLDLSSLLDSVVALYS 346
Query: 483 HVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKK 542
V KG+ + D + H+ GD V+++Q+L NL+SN++KFT G +++R +K
Sbjct: 347 SVAANKGLRLYW-AADTEL--PEHLLGDPVRIQQVLNNLLSNALKFTEHGEVAIRVHCEK 403
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
++E N + + F V DTG GIP
Sbjct: 404 -------------------------------------TLE-NSKVWRVHFTVADTGIGIP 425
Query: 603 KDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
K +IF+ F Q +E G GLGL IV+ +V LM GEI + G RF+
Sbjct: 426 ASKLGNIFDPFAQAEEWTTRKYGGTGLGLSIVERLVRLMHGEIRVESA----VGEGTRFH 481
Query: 663 VLL 665
+L+
Sbjct: 482 LLI 484
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 76/142 (53%), Gaps = 12/142 (8%)
Query: 949 AQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSD 1008
A+ D + ++ L K+ L+VED + K+ +L + G + + NG EA V +
Sbjct: 497 AELDKEAAQCKLTNKQILLVEDTPVNQKIAEKLLSRYGCRVTIAVNGLEALAAVERD--- 553
Query: 1009 LRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKI 1067
+D I+MD +MP M+G EATR +R E + + PI+A+TA+AM +
Sbjct: 554 --------TFDLILMDMQMPEMDGVEATRHLRIREAELKLPRQPIVAMTANAMEEDREQC 605
Query: 1068 VDAGMDFHLTKPLQKDKLLDVV 1089
+ AGMD + KP + D+++ ++
Sbjct: 606 ITAGMDDFIAKPFRADEVISML 627
>gi|374301838|ref|YP_005053477.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
gi|332554774|gb|EGJ51818.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
Length = 1051
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 142/297 (47%), Gaps = 46/297 (15%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
AE S K+ LA SH++R L I+G+VEL H A + L L + LL I
Sbjct: 665 AEAASRAKSMFLAHMSHELRTPLNGILGMVELAHM-ACADEKQCKYLELAKQSGHTLLDI 723
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGS 504
+N +++++KIEAGK EL E F+L +++E ++ +G +KG++V +DP L
Sbjct: 724 INDILDLAKIEAGKAELKNEPFSLREVMESTIEPLAMLGRRKGLEVTWRMDPRIPDRLA- 782
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
GD+ +L+Q+L NLV N++KFT G +SV + + F+ C
Sbjct: 783 ----GDQGRLRQVLANLVGNALKFTERGSVSVDLGLSRGGFETR---------PYC---- 825
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
P ++ F + DTG GIP+DK +FE F Q +A
Sbjct: 826 --------------------PAGMRLIFSIADTGIGIPQDKLPHLFESFTQALTSAHVKF 865
Query: 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDP 681
G GLGL I + +V +M+G I A+ G +G F F + C ++P E P
Sbjct: 866 GGTGLGLCISKRLVEMMQGTI-WAESVVG-KGSTFSFTAVF---CVPQQPTLPEAAP 917
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 12/129 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV ED+ I + +LG G + G EA L LR+ YD ++M
Sbjct: 929 RVLVAEDNQINQVLIRELLGMQGHTASIVGTGLEA-------LQALRQ----AEYDLVLM 977
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP MNG +A + IR E IP+IALTA+A+ G + + AGMD +L KP++ +
Sbjct: 978 DIRMPDMNGLQAVQRIRAGEAG-KTDIPVIALTAYALEGDRKRFLAAGMDGYLAKPIRIE 1036
Query: 1084 KLLDVVKSI 1092
+ V++ +
Sbjct: 1037 EFNTVLRDV 1045
>gi|443327935|ref|ZP_21056541.1| PAS domain S-box [Xenococcus sp. PCC 7305]
gi|442792439|gb|ELS01920.1| PAS domain S-box [Xenococcus sp. PCC 7305]
Length = 1223
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 144/295 (48%), Gaps = 50/295 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A + AE + K+ LA SH++R L AI+G ++ + D + + +NLG+I +
Sbjct: 744 AKDAAETANRAKSEFLASMSHELRTPLNAILGFTQVMNRDYSLSREQKQNLGIISRSGEH 803
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N ++EMSKIEAG+ + E F++ LL+ + +M KG+ ++++
Sbjct: 804 LLELINDILEMSKIEAGRTTINENSFDIYCLLDSLEEMLRLKADAKGLQLIVERTPDV-- 861
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+V+ D KL+Q+L NLV N++KFTSEG + +R
Sbjct: 862 -PQYVKTDEGKLRQVLINLVGNAIKFTSEGGVILRGKT---------------------- 898
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+D N +LL FE++DTG GI D+ + +FE F Q ET
Sbjct: 899 ------------ID-------NQHLL---FEIEDTGPGIAADEIDKLFEAFGQT-ETGRK 935
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTD 677
Q+G GLGL I Q V LM G I ++ +G F F+ ++A E E T+
Sbjct: 936 SQQGTGLGLPISQKFVELMGGNIRVSSILG--QGTMFAFDFEVSAADESEVKTTN 988
Score = 40.8 bits (94), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I MD MPVM+G+EAT I+ + Q V +IALTA A + ++ AG D + KP
Sbjct: 1050 IWMDMRMPVMDGYEATNHIKSTLKGQATV---VIALTASAFEEERTVVLSAGCDDFMRKP 1106
Query: 1080 LQKDKLLD 1087
+++ L +
Sbjct: 1107 FREEVLYE 1114
>gi|169797173|ref|YP_001714966.1| GacS-like sensor kinase protein [Acinetobacter baumannii AYE]
gi|215484636|ref|YP_002326871.1| Sensor protein gacS [Acinetobacter baumannii AB307-0294]
gi|239500717|ref|ZP_04660027.1| Sensor protein gacS [Acinetobacter baumannii AB900]
gi|260556077|ref|ZP_05828296.1| sensor protein gacS [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|301345776|ref|ZP_07226517.1| Sensor protein gacS [Acinetobacter baumannii AB056]
gi|301511166|ref|ZP_07236403.1| Sensor protein gacS [Acinetobacter baumannii AB058]
gi|301594979|ref|ZP_07239987.1| Sensor protein gacS [Acinetobacter baumannii AB059]
gi|332856912|ref|ZP_08436321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6013150]
gi|332867184|ref|ZP_08437449.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6013113]
gi|332874024|ref|ZP_08441959.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6014059]
gi|384130575|ref|YP_005513187.1| barA [Acinetobacter baumannii 1656-2]
gi|384141859|ref|YP_005524569.1| GacS-like sensor kinase protein [Acinetobacter baumannii MDR-ZJ06]
gi|385236167|ref|YP_005797506.1| GacS-like sensor kinase protein [Acinetobacter baumannii
TCDC-AB0715]
gi|387125187|ref|YP_006291069.1| signal transduction histidine kinase [Acinetobacter baumannii
MDR-TJ]
gi|407931503|ref|YP_006847146.1| signal transduction histidine kinase [Acinetobacter baumannii
TYTH-1]
gi|416146676|ref|ZP_11601339.1| Signal transduction histidine kinase [Acinetobacter baumannii
AB210]
gi|417545223|ref|ZP_12196309.1| GHKL domain protein [Acinetobacter baumannii OIFC032]
gi|417548913|ref|ZP_12199994.1| GHKL domain protein [Acinetobacter baumannii Naval-18]
gi|417564245|ref|ZP_12215119.1| GHKL domain protein [Acinetobacter baumannii OIFC143]
gi|417570614|ref|ZP_12221471.1| GHKL domain protein [Acinetobacter baumannii OIFC189]
gi|417573478|ref|ZP_12224332.1| GHKL domain protein [Acinetobacter baumannii Canada BC-5]
gi|417577140|ref|ZP_12227985.1| GHKL domain protein [Acinetobacter baumannii Naval-17]
gi|417871210|ref|ZP_12516153.1| Sensor protein gacS [Acinetobacter baumannii ABNIH1]
gi|417875880|ref|ZP_12520680.1| Sensor protein gacS [Acinetobacter baumannii ABNIH2]
gi|417879626|ref|ZP_12524183.1| Sensor protein gacS [Acinetobacter baumannii ABNIH3]
gi|417882286|ref|ZP_12526588.1| Sensor protein gacS [Acinetobacter baumannii ABNIH4]
gi|421201789|ref|ZP_15658944.1| GacS-like sensor kinase protein [Acinetobacter baumannii AC12]
gi|421535285|ref|ZP_15981547.1| GacS-like sensor kinase protein [Acinetobacter baumannii AC30]
gi|421622209|ref|ZP_16063116.1| GHKL domain protein [Acinetobacter baumannii OIFC074]
gi|421625735|ref|ZP_16066581.1| GHKL domain protein [Acinetobacter baumannii OIFC098]
gi|421630525|ref|ZP_16071228.1| GHKL domain protein [Acinetobacter baumannii OIFC180]
gi|421642970|ref|ZP_16083481.1| GHKL domain protein [Acinetobacter baumannii IS-235]
gi|421645639|ref|ZP_16086103.1| GHKL domain protein [Acinetobacter baumannii IS-251]
gi|421651950|ref|ZP_16092315.1| GHKL domain protein [Acinetobacter baumannii OIFC0162]
gi|421657789|ref|ZP_16098037.1| GHKL domain protein [Acinetobacter baumannii Naval-83]
gi|421666336|ref|ZP_16106428.1| GHKL domain protein [Acinetobacter baumannii OIFC087]
gi|421671063|ref|ZP_16111045.1| GHKL domain protein [Acinetobacter baumannii OIFC099]
gi|421677416|ref|ZP_16117308.1| GHKL domain protein [Acinetobacter baumannii OIFC111]
gi|421688310|ref|ZP_16128010.1| GHKL domain protein [Acinetobacter baumannii IS-143]
gi|421701253|ref|ZP_16140759.1| GHKL domain protein [Acinetobacter baumannii IS-58]
gi|421702304|ref|ZP_16141788.1| barA [Acinetobacter baumannii ZWS1122]
gi|421706043|ref|ZP_16145463.1| barA [Acinetobacter baumannii ZWS1219]
gi|421791460|ref|ZP_16227636.1| GHKL domain protein [Acinetobacter baumannii Naval-2]
gi|421796182|ref|ZP_16232249.1| GHKL domain protein [Acinetobacter baumannii Naval-21]
gi|421798701|ref|ZP_16234717.1| GHKL domain protein [Acinetobacter baumannii Canada BC1]
gi|424053672|ref|ZP_17791203.1| hypothetical protein W9G_02864 [Acinetobacter baumannii Ab11111]
gi|424061138|ref|ZP_17798628.1| hypothetical protein W9K_02251 [Acinetobacter baumannii Ab33333]
gi|424064609|ref|ZP_17802093.1| hypothetical protein W9M_02598 [Acinetobacter baumannii Ab44444]
gi|425747233|ref|ZP_18865243.1| GHKL domain protein [Acinetobacter baumannii WC-348]
gi|425753772|ref|ZP_18871640.1| GHKL domain protein [Acinetobacter baumannii Naval-113]
gi|445400251|ref|ZP_21429901.1| GHKL domain protein [Acinetobacter baumannii Naval-57]
gi|445459605|ref|ZP_21447628.1| GHKL domain protein [Acinetobacter baumannii OIFC047]
gi|445465096|ref|ZP_21449874.1| GHKL domain protein [Acinetobacter baumannii OIFC338]
gi|445481384|ref|ZP_21455828.1| histidine kinase A domain / GHKL domain / response regulator
receiver domain / Hpt domain multi-domain protein
[Acinetobacter baumannii Naval-78]
gi|20271376|gb|AAM18622.1|AF497904_1 GacS-like sensor kinase protein [Acinetobacter baumannii]
gi|169150100|emb|CAM87994.1| GacS-like sensor kinase protein [Acinetobacter baumannii AYE]
gi|213986830|gb|ACJ57129.1| Sensor protein gacS [Acinetobacter baumannii AB307-0294]
gi|260410132|gb|EEX03431.1| sensor protein gacS [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|322506795|gb|ADX02249.1| barA [Acinetobacter baumannii 1656-2]
gi|323516664|gb|ADX91045.1| GacS-like sensor kinase protein [Acinetobacter baumannii
TCDC-AB0715]
gi|332726966|gb|EGJ58471.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6013150]
gi|332734123|gb|EGJ65255.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6013113]
gi|332737765|gb|EGJ68657.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6014059]
gi|333366057|gb|EGK48071.1| Signal transduction histidine kinase [Acinetobacter baumannii
AB210]
gi|342224496|gb|EGT89526.1| Sensor protein gacS [Acinetobacter baumannii ABNIH2]
gi|342226031|gb|EGT91007.1| Sensor protein gacS [Acinetobacter baumannii ABNIH1]
gi|342227724|gb|EGT92637.1| Sensor protein gacS [Acinetobacter baumannii ABNIH3]
gi|342238027|gb|EGU02469.1| Sensor protein gacS [Acinetobacter baumannii ABNIH4]
gi|347592352|gb|AEP05073.1| GacS-like sensor kinase protein [Acinetobacter baumannii MDR-ZJ06]
gi|385879679|gb|AFI96774.1| signal transduction histidine kinase [Acinetobacter baumannii
MDR-TJ]
gi|395551062|gb|EJG17071.1| GHKL domain protein [Acinetobacter baumannii OIFC189]
gi|395556001|gb|EJG22002.1| GHKL domain protein [Acinetobacter baumannii OIFC143]
gi|395570361|gb|EJG31023.1| GHKL domain protein [Acinetobacter baumannii Naval-17]
gi|398328674|gb|EJN44797.1| GacS-like sensor kinase protein [Acinetobacter baumannii AC12]
gi|400209046|gb|EJO40016.1| GHKL domain protein [Acinetobacter baumannii Canada BC-5]
gi|400383111|gb|EJP41789.1| GHKL domain protein [Acinetobacter baumannii OIFC032]
gi|400389212|gb|EJP52284.1| GHKL domain protein [Acinetobacter baumannii Naval-18]
gi|404561053|gb|EKA66289.1| GHKL domain protein [Acinetobacter baumannii IS-143]
gi|404567855|gb|EKA72970.1| GHKL domain protein [Acinetobacter baumannii IS-58]
gi|404666820|gb|EKB34750.1| hypothetical protein W9K_02251 [Acinetobacter baumannii Ab33333]
gi|404667158|gb|EKB35079.1| hypothetical protein W9G_02864 [Acinetobacter baumannii Ab11111]
gi|404672692|gb|EKB40496.1| hypothetical protein W9M_02598 [Acinetobacter baumannii Ab44444]
gi|407194476|gb|EKE65616.1| barA [Acinetobacter baumannii ZWS1122]
gi|407194678|gb|EKE65815.1| barA [Acinetobacter baumannii ZWS1219]
gi|407900084|gb|AFU36915.1| signal transduction histidine kinase [Acinetobacter baumannii
TYTH-1]
gi|408507071|gb|EKK08773.1| GHKL domain protein [Acinetobacter baumannii OIFC0162]
gi|408511536|gb|EKK13184.1| GHKL domain protein [Acinetobacter baumannii IS-235]
gi|408518267|gb|EKK19793.1| GHKL domain protein [Acinetobacter baumannii IS-251]
gi|408696265|gb|EKL41807.1| GHKL domain protein [Acinetobacter baumannii OIFC074]
gi|408697378|gb|EKL42892.1| GHKL domain protein [Acinetobacter baumannii OIFC180]
gi|408697829|gb|EKL43335.1| GHKL domain protein [Acinetobacter baumannii OIFC098]
gi|408711578|gb|EKL56783.1| GHKL domain protein [Acinetobacter baumannii Naval-83]
gi|409986838|gb|EKO43029.1| GacS-like sensor kinase protein [Acinetobacter baumannii AC30]
gi|410383360|gb|EKP35893.1| GHKL domain protein [Acinetobacter baumannii OIFC099]
gi|410388261|gb|EKP40700.1| GHKL domain protein [Acinetobacter baumannii OIFC087]
gi|410393172|gb|EKP45526.1| GHKL domain protein [Acinetobacter baumannii OIFC111]
gi|410399697|gb|EKP51881.1| GHKL domain protein [Acinetobacter baumannii Naval-21]
gi|410402965|gb|EKP55068.1| GHKL domain protein [Acinetobacter baumannii Naval-2]
gi|410412142|gb|EKP64002.1| GHKL domain protein [Acinetobacter baumannii Canada BC1]
gi|425494121|gb|EKU60336.1| GHKL domain protein [Acinetobacter baumannii WC-348]
gi|425497666|gb|EKU63771.1| GHKL domain protein [Acinetobacter baumannii Naval-113]
gi|444770176|gb|ELW94333.1| histidine kinase A domain / GHKL domain / response regulator
receiver domain / Hpt domain multi-domain protein
[Acinetobacter baumannii Naval-78]
gi|444773799|gb|ELW97890.1| GHKL domain protein [Acinetobacter baumannii OIFC047]
gi|444779228|gb|ELX03222.1| GHKL domain protein [Acinetobacter baumannii OIFC338]
gi|444783633|gb|ELX07492.1| GHKL domain protein [Acinetobacter baumannii Naval-57]
gi|452955833|gb|EME61230.1| signal transduction histidine kinase [Acinetobacter baumannii
MSP4-16]
Length = 935
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 149/356 (41%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIE 530
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 531 ------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|325110166|ref|YP_004271234.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
gi|324970434|gb|ADY61212.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
Length = 1273
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 132/288 (45%), Gaps = 64/288 (22%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVEL-CHEDANPGTDLAENLGLIRTCSKDL 443
E AE + K+ LA SH++R L +IG+++L C D + + + + ++ L
Sbjct: 600 EMAEAANKAKSSFLATMSHEIRTPLNGVIGMLDLLCETDTD--QQQGRYVSIAKNSAESL 657
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLG 503
L ++N +++ SKIEAGK+EL EFNL L+E+V DM+ H KG+++
Sbjct: 658 LCLINDILDFSKIEAGKLELSPSEFNLPTLVEDVSDMFAHRAASKGLEL----------- 706
Query: 504 SCH--------VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
SCH V GD +L+QIL NL+ N++KFT G I + A
Sbjct: 707 SCHILPEVASRVLGDSERLRQILINLIGNAIKFTEVGEIRINVAATST------------ 754
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
R+ E + FEV DTG GIP+D Q +F+ F Q
Sbjct: 755 -----------RDHEQW-----------------VRFEVQDTGVGIPEDIQQRLFQPFEQ 786
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ G GLGL I + + LM G+I + D + G G F +
Sbjct: 787 ADASTTRKFGGTGLGLAICRELAILMGGKITV-DSQLGS-GATFSLEI 832
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 78/137 (56%), Gaps = 17/137 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV ED+ I VT ++ + G + + NG+EA D + K RK +D ++M
Sbjct: 1003 RILVTEDNEINQIVTQEIIERAGFQCRLANNGQEAIDLLKK-----RK------FDLVLM 1051
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDV------HIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
DC+MPV +G+ AT IR+ + + ++ H+PI+ALTA+A+ G + + AGMD ++
Sbjct: 1052 DCQMPVKDGFTATAEIRQIQPKGELNKDLPQHLPIVALTANAVKGDQERCLKAGMDAYVA 1111
Query: 1078 KPLQKDKLLDVVKSIDE 1094
KP+ L+ ++ + E
Sbjct: 1112 KPIDPQLLISTIRKLLE 1128
>gi|158338408|ref|YP_001519585.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
gi|158308649|gb|ABW30266.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
Length = 1076
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 144/284 (50%), Gaps = 38/284 (13%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A ++A+ S K+ LA SH++R + A+IG+ L + + + IR+
Sbjct: 539 TAKDRADAASQVKSEFLANMSHELRTPMNAVIGMTGLLTHTSLDAQQ-QDFVDTIRSSGD 597
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDG 499
LL ++N +++ SKIEAGK+E+ E+ FNL +EE + + KKG+++ + DP
Sbjct: 598 ALLCLINDILDFSKIEAGKLEVEEQPFNLKSCIEEALKLVAPRAFKKGLEIAYLADPD-- 655
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
C + GD +L+Q+L NL++N +KFT G + V + +++ A
Sbjct: 656 ---LPCGIVGDVTRLRQVLVNLLTNGVKFTDNGEVIV--------YVKEVTAE------- 697
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
+++EG S ++P L F+F V DTG GIP+D+ N +F+ F QV +
Sbjct: 698 ------IQDREGSG------SEGQSPRRL-FQFAVKDTGIGIPEDRLNRLFQSFSQVDSS 744
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + + LM G+I + D E G G F F +
Sbjct: 745 TTRKYGGTGLGLAISKRLCELMGGKIWV-DSEIG-IGSTFTFTI 786
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 76/137 (55%), Gaps = 14/137 (10%)
Query: 951 SDGKCSEKPLNGKKF--LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSD 1008
S+ C + N K L+ ED + KV +L +LG + +V NGKE +L
Sbjct: 936 SEFDCPQPSTNSKTLHLLLAEDVVVNQKVALLILKQLGYEADVANNGKE-------VLEA 988
Query: 1009 LRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV 1068
L ++ PYD ++MD +MP M+G A+R I +E + IIALTA+AM G K +
Sbjct: 989 LHRQ----PYDVVLMDLQMPEMDGLTASRAI-QETWSPEARPYIIALTANAMQGDREKCL 1043
Query: 1069 DAGMDFHLTKPLQKDKL 1085
+AGM +++KP++ ++L
Sbjct: 1044 EAGMQDYVSKPIRSEEL 1060
>gi|428223547|ref|YP_007107644.1| GAF sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427983448|gb|AFY64592.1| GAF sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 1053
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 130/273 (47%), Gaps = 40/273 (14%)
Query: 391 SMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSV 450
S K+ LA SH++R L AI+G +L D + L ++ + LL ++N V
Sbjct: 562 SRAKSEFLANMSHELRTPLNAILGFTQLMLGDKTLSQGQQQYLEIVNQSGEHLLSLINDV 621
Query: 451 MEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGD 510
+EMSKIEAG+ L EE FNL QLL V M+ KG+ ++ D S ++ GD
Sbjct: 622 LEMSKIEAGRTTLHEEAFNLYQLLRNVEAMFQLKAKSKGLRLIFDV---SPQLPQYIFGD 678
Query: 511 RVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKE 570
KL+Q+L N++ N++KFT+ G + + A + + Q
Sbjct: 679 EKKLRQVLINILGNAIKFTNLGFVKLSAHLFAELVNQ----------------------- 715
Query: 571 GFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLG 630
E N F V+DTG GI + ++FE F Q +T L EG GLG
Sbjct: 716 -----------ETNARKYVLSFAVEDTGPGIESEGLRALFEAFKQT-QTGLDINEGTGLG 763
Query: 631 LGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
L I +S V+LM GEI++ K RG F+F +
Sbjct: 764 LRISKSFVNLMGGEISV--KSEVGRGSEFKFEI 794
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 30/176 (17%)
Query: 929 FGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAK 988
F +AG + + L + AQ+ E + L+ +D +V + +L G +
Sbjct: 792 FEIQAG-PVQTDVKDLLKSEAQTMAMTIEAGQPSYRILITDDHPLVRLLLKKILTSAGME 850
Query: 989 FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE------ 1042
+ NG+EA + +C+ P+ I MD MPVM+G+ AT++++
Sbjct: 851 TQEAVNGQEAVE-ICRTWQ---------PH-LIFMDMHMPVMDGYTATKMLKTRPPTAIA 899
Query: 1043 ------------EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
E + IIALTA A I+ G D + KP +K+++
Sbjct: 900 SSASGISQAAIAPEHLERSPIIIALTASAFEEQRQDILAVGCDDLVRKPFRKEEIF 955
>gi|421808063|ref|ZP_16243920.1| GHKL domain protein [Acinetobacter baumannii OIFC035]
gi|410416242|gb|EKP68017.1| GHKL domain protein [Acinetobacter baumannii OIFC035]
Length = 935
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 149/356 (41%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIE 530
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 531 ------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|421656356|ref|ZP_16096664.1| GHKL domain protein [Acinetobacter baumannii Naval-72]
gi|408505745|gb|EKK07464.1| GHKL domain protein [Acinetobacter baumannii Naval-72]
Length = 935
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 149/356 (41%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIE 530
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 531 ------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|421662107|ref|ZP_16102275.1| GHKL domain protein [Acinetobacter baumannii OIFC110]
gi|421694004|ref|ZP_16133636.1| GHKL domain protein [Acinetobacter baumannii WC-692]
gi|404569843|gb|EKA74928.1| GHKL domain protein [Acinetobacter baumannii WC-692]
gi|408714910|gb|EKL60040.1| GHKL domain protein [Acinetobacter baumannii OIFC110]
Length = 935
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 149/356 (41%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIE 530
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 531 ------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|223939259|ref|ZP_03631140.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
gi|223892091|gb|EEF58571.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
Length = 844
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 137/285 (48%), Gaps = 33/285 (11%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
++ E ++ K+ LA SH+VR + +IG+ L D + E + R+ + +L
Sbjct: 178 QKLEEATLAKSEFLANMSHEVRTPMNGVIGMTALLL-DTELTDEQREYVEATRSSADAML 236
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGS 504
I+N +++ SKIE+GK++L F L +EE +D+ +K +D+ D +
Sbjct: 237 TIINDILDFSKIESGKLDLESHPFELHTCIEEALDLLAPKAAEKDLDLAYSVDDA--IPK 294
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
V GD +L+QIL NL+ N++KFT+EG + ++ K
Sbjct: 295 ILV-GDVTRLRQILVNLIGNAVKFTNEGEVFIQVKPAPKH-------------------- 333
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
F+D D S P++ +F V DTG GIP DKQ+ +F+ F QV + H
Sbjct: 334 -------FNDRDRSASSITGPDMWMLQFSVRDTGVGIPIDKQHRLFKSFQQVDASTTRHY 386
Query: 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVC 669
G GLGL I + + LM G+I + + + G +G F F + A
Sbjct: 387 GGTGLGLAICKKLSELMGGDIQV-ESDAG-KGSTFHFTIQARATA 429
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 12/118 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ +D+ I KV VL +LG + +V NG E +L L ++ PYD I++
Sbjct: 591 RILLADDNPINQKVGLNVLRRLGYRADVANNGLE-------VLRALDRQ----PYDIILL 639
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
D +MP ++G+E T IR E ++A+T +A+ G K +DAGMD +++KP++
Sbjct: 640 DVQMPELDGFETTSSIR-ERWPLGKRPRVVAMTGNALLGDREKCLDAGMDDYISKPIR 696
>gi|421675842|ref|ZP_16115761.1| GHKL domain protein [Acinetobacter baumannii OIFC065]
gi|421692525|ref|ZP_16132176.1| GHKL domain protein [Acinetobacter baumannii IS-116]
gi|445451410|ref|ZP_21444763.1| GHKL domain protein [Acinetobacter baumannii WC-A-92]
gi|404559811|gb|EKA65062.1| GHKL domain protein [Acinetobacter baumannii IS-116]
gi|410381359|gb|EKP33925.1| GHKL domain protein [Acinetobacter baumannii OIFC065]
gi|444755081|gb|ELW79674.1| GHKL domain protein [Acinetobacter baumannii WC-A-92]
Length = 935
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 149/356 (41%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIE 530
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 531 ------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|117926677|ref|YP_867294.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117610433|gb|ABK45888.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 874
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 158/327 (48%), Gaps = 48/327 (14%)
Query: 358 LFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVE 417
LF+ L+A ++R + ALI+ A EQAE +M K+ LA SH+VR + I+G++
Sbjct: 345 LFVGLVADVSER-LQEERALIE---AKEQAEAANMAKSRFLAVMSHEVRTPMNGILGMLG 400
Query: 418 LCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEV 477
L ++ G E L + ++ +L +LN +++ SKIEAG +EL + F+ Q+L+ V
Sbjct: 401 LLNDRRLDGQQ-QEWLATAQESAESMLTLLNDILDFSKIEAGHLELEQSAFSPEQILKGV 459
Query: 478 VDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVR 537
D++ KG+ + L+ G+ L + V+GD +L+Q+L NLVSN +KFT +G +++R
Sbjct: 460 HDLFLPRATAKGITLELE--QGANLPAW-VQGDPGRLRQVLMNLVSNGIKFTHQGGVTMR 516
Query: 538 AAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDT 597
A + K R +LL +FEV D+
Sbjct: 517 VAQQAK---------------------------------------REDSLL-LQFEVQDS 536
Query: 598 GKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGV 657
G GIP + +F+ F Q+ + G GLGL I + +V LM GEI + G
Sbjct: 537 GIGIPPQQLTQLFQPFNQLDPSYSRKYGGSGLGLAICRHLVDLMGGEIRLESPPSGGSRF 596
Query: 658 CFRFNVLLTAVCERERPDTDEEDPRTH 684
F + E D E++ + H
Sbjct: 597 TFTARFGYAHAPQDEVLDNSEQEVQLH 623
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 12/141 (8%)
Query: 952 DGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRK 1011
D E L+G + L+ ED V A+L ++G +V NG E + + +
Sbjct: 614 DNSEQEVQLHGVRVLLAEDSPTNQMVAVAMLARVGCHVDVAVNGLEVLEALTRA------ 667
Query: 1012 EGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAG 1071
PYD I+MD MP M+GW+A IR IPIIALTA+A V ++ + AG
Sbjct: 668 -----PYDLILMDLAMPEMDGWQAIARIRGMNAPLR-DIPIIALTANAYPEVRAQCLAAG 721
Query: 1072 MDFHLTKPLQKDKLLDVVKSI 1092
+TKP+Q++ LL+ + ++
Sbjct: 722 AQDFITKPIQRNILLNGILAL 742
>gi|443477298|ref|ZP_21067155.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
gi|443017594|gb|ELS32000.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
Length = 834
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 144/294 (48%), Gaps = 42/294 (14%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA--NPGTDLAENLGLIRTCS 440
A + AE+ + K+ LA SH++R + ++G+ +L + D EN IR
Sbjct: 283 ARQFAEQSNRAKSIFLANMSHEIRTPMNGVLGMTDLLLSTTLDDRQQDFVEN---IRLSG 339
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
LL ++N ++++SK+E G+++L FNL Q +EE+++++ + +++ + S
Sbjct: 340 NLLLSLINRILDLSKLEEGELQLESLPFNLEQCIEEILELFGLQAHNQSLEI-----NAS 394
Query: 501 VLGSCH--VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
+ D V+ +QI+ NL+ N++KFTSEG I VR I +R+
Sbjct: 395 FEEDLPRLLMADTVRFRQIMMNLIGNAIKFTSEGEIVVR------------IERDRD--- 439
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
F NK+ + + +P+ + F V DTG GI Q+ +F+ F QV
Sbjct: 440 -------FENKKSLE--------QASPSQIYLRFSVIDTGIGIHPSNQDKLFKPFSQVDT 484
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
+ G GLGL I + +V LM+GEI I+ +RG CF F + T +E
Sbjct: 485 STNRRFGGTGLGLAISRQLVELMQGEIGISSPVDNDRGTCFWFVLPFTLQTNQE 538
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 936 SISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNG 995
SI + SS+ Q + EK L + L+ ED+ KVT A L +LG + ++ NG
Sbjct: 686 SIPTTASSISSRENQEEAILMEK-LRSLRILLAEDNITNQKVTLAYLSQLGIQSDLAENG 744
Query: 996 KEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE--EQYDVHIPII 1053
++ + + YD I+MDC+MPV++G++ T IR+ E Q I II
Sbjct: 745 EQVLQLI-----------QTKSYDIILMDCQMPVLDGYDTTEAIRRLEAINQTPKPILII 793
Query: 1054 ALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
A+TA+A + + GMD +L+KP++K +L
Sbjct: 794 AMTANAFTEDRDRCLAIGMDDYLSKPIRKQQL 825
Score = 44.7 bits (104), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEA---FDHVCKILSDLRKEGK 1014
+ L+ + LVV+ + K L K GA + EA DH +
Sbjct: 547 QSLSDRHILVVDANQYARKTIRYYLTKFGANIHEASSLPEAIAYLDH-----GQNQNHNN 601
Query: 1015 ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDF 1074
D +++D + NG EA R I +E+ +++PIIAL G +D G
Sbjct: 602 NHNIDAVLIDWRLTNFNGTEAIRQIHSKEKF--INLPIIALLTANRQGETQTALDQGFCG 659
Query: 1075 HLTKPLQKDKLL 1086
++TKP +K +LL
Sbjct: 660 YVTKPFKKQRLL 671
>gi|184156899|ref|YP_001845238.1| Signal transduction histidine kinase [Acinetobacter baumannii
ACICU]
gi|183208493|gb|ACC55891.1| Signal transduction histidine kinase [Acinetobacter baumannii
ACICU]
Length = 906
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 149/356 (41%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 245 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 304
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 305 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 364
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 365 DNI---PQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 409
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 410 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 441
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 442 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIE 501
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 502 ------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 529
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 593 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 652
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 653 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 707
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 708 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 757
>gi|374999131|ref|YP_004974629.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
gi|357426556|emb|CBS89485.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
Length = 719
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 140/277 (50%), Gaps = 41/277 (14%)
Query: 391 SMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRTCSKDLLGI 446
S K+ LA SH++R + A+IG+ +L GT L++ + +R+ + L+ I
Sbjct: 192 SRAKSRFLAMMSHELRTPMTAVIGMGDLLM-----GTGLSDQQKSFVRTLRSSADTLMTI 246
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH 506
LN V++ SKIEAG++ L E +F+L +L+++VV ++ KG+ + D + H
Sbjct: 247 LNDVLDFSKIEAGQLMLEEIDFSLPRLVDDVVQLFLVRAAAKGLALSASIADDT---PRH 303
Query: 507 VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFF 566
+RGD +L+Q+L NLVSN++KFT G I + + S ++
Sbjct: 304 IRGDPTRLRQVLFNLVSNAIKFTERGAIEI------------AVWSPDPPVTPSAG---- 347
Query: 567 RNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEG 626
R EG A V FEV D+G G+ +++ +F+ FVQ + G
Sbjct: 348 RAGEG----GATAPV-------TLRFEVQDSGIGMTAEQRGRLFDAFVQADASTSRKYGG 396
Query: 627 LGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
GLGL I + +V M GEI +A PG RG FRF++
Sbjct: 397 TGLGLAICKRLVEAMGGEITVA-SAPG-RGSTFRFSI 431
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 12/122 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ I + A++ ++G + + +G+ D + KA YD +++
Sbjct: 465 RLLLAEDNDINRMLIIAMMTRIGHRIDAVNDGRAVLDAI-----------KATDYDVLIL 513
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D EMPV++G R IR+ + IPI+ L+A A+ + AG+D +LTKP+ +
Sbjct: 514 DMEMPVLDGRSTARAIRRMDGAV-ARIPIVGLSADALPEHRDGHMAAGLDAYLTKPIDWE 572
Query: 1084 KL 1085
+L
Sbjct: 573 QL 574
>gi|386394368|ref|ZP_10079149.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385735246|gb|EIG55444.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 1526
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 143/299 (47%), Gaps = 25/299 (8%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A AE S K+ LA SH++R L+ IIG+ +L A+P L I+ +
Sbjct: 1120 LEAKRTAEDASQAKSEFLANMSHEIRTPLSGIIGMTDLLL-GADPNERQRLYLESIQESA 1178
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
L+ I+N +++ SKIEA K+EL E+ F+LAQ+++ + + + KKG+ + G
Sbjct: 1179 DSLMAIINDILDFSKIEARKLELQEQPFDLAQIMDATLKGFKPLAEKKGLALTTFVHSGV 1238
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ GD V+LKQIL NLV N++KFTS+G + ++ + N+ K
Sbjct: 1239 ---PTDLFGDPVRLKQILVNLVGNAIKFTSKGGVDIQVGTLN-------LPDEMNIFPKR 1288
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+ N DD + V + F V DTG GIP Q SIF F Q
Sbjct: 1289 PT-----NGPPPDDASRVSRV-------RLLFSVRDTGIGIPLKNQQSIFGMFSQGDVGT 1336
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEE 679
G GLGL I +S++ +M G I + +E +G F +VLL + T EE
Sbjct: 1337 KKQYAGTGLGLSITKSLITMMDGNIWVVSQE--GKGSTFYCSVLLKIQNQHGSKTTTEE 1393
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 17/165 (10%)
Query: 931 AEAGASISSHCSSLQQVAAQSDGKCSEK---PLNGK--KFLVVEDDAIVLKVTSAVLGKL 985
++ G + +CS L ++ Q K + + P G+ K L+ ED+ I +L
Sbjct: 1365 SQEGKGSTFYCSVLLKIQNQHGSKTTTEEAAPAPGRPLKILLAEDNPINRLFLQELLRND 1424
Query: 986 GAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE-EE 1044
G + +G+EA L L+ E +D ++MD MP M+G EATR IR +
Sbjct: 1425 GHTIKPAVDGQEA-------LEALQNEA----FDLVLMDISMPGMDGIEATRRIRGSVSD 1473
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ D IPIIALTAHA + + AGMD +L+KP+ KL ++
Sbjct: 1474 KIDAKIPIIALTAHAFREDEERFLKAGMDGYLSKPIDPAKLRKIL 1518
>gi|126640645|ref|YP_001083629.1| GacS-like sensor kinase protein [Acinetobacter baumannii ATCC
17978]
Length = 906
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 149/356 (41%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 245 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 304
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 305 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 364
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 365 DNI---PQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 409
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 410 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 441
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 442 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIE 501
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 502 ------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 529
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 593 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 652
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 653 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 707
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 708 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 757
>gi|423063248|ref|ZP_17052038.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
gi|406715370|gb|EKD10526.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
Length = 1493
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 131/266 (49%), Gaps = 38/266 (14%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELC--HEDANPGTDLAENLGLIRTCSKDLL 444
AE S K+ LA SH++R + A+IG+ L E D E IRT LL
Sbjct: 725 AEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMELTPEQRDFVET---IRTSGDALL 781
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDGSVL 502
I+N +++ SKIE+GK+EL ++ F L LEE +++ +KG+++ ++DP
Sbjct: 782 TIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRADEKGLELAYIIDPSTPKT- 840
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ D +L+Q+L NLVSN++KFTSEG + + K+D+ S+ +
Sbjct: 841 ----ILVDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKKDVKKSDDS------- 889
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
D H V +FEV DTG GIP D+ + +F+ F QV +
Sbjct: 890 -----------DFTESHYV--------LQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTR 930
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIA 648
G GLGL I Q + LM G++ +A
Sbjct: 931 EYGGTGLGLAISQRLSQLMNGKMWVA 956
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 15/136 (11%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+P + L+ ED+ KV +L +LG + ++ NG E D + +
Sbjct: 1174 QPHANLRILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALNR-----------QQ 1222
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP----IIALTAHAMAGVASKIVDAGMD 1073
YD I+MD +MP M+G EA++ I P IIA+TA+AM G ++AGMD
Sbjct: 1223 YDVILMDVQMPEMDGLEASKHICAAYSDGSDMGPRKPRIIAMTANAMQGDREMCLNAGMD 1282
Query: 1074 FHLTKPLQKDKLLDVV 1089
++TKP++++ L + +
Sbjct: 1283 DYITKPVRREALAEAL 1298
>gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Coleofasciculus
chthonoplastes PCC 7420]
gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Coleofasciculus
chthonoplastes PCC 7420]
Length = 684
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 147/301 (48%), Gaps = 51/301 (16%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHE---DANPGTDLAENLGLIRTCSKDLLGILNSV 450
K+ LA SH++R L A+IGL + DA+ DL E IR + LL +N V
Sbjct: 158 KSEFLATMSHEIRTPLNAVIGLTGILENTKLDAH-QQDLVET---IRQSGETLLITINDV 213
Query: 451 MEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGSCHVR 508
++ +KIE+GK+EL + FNL LE VD++ ++KG+++ +DP S L
Sbjct: 214 LDFAKIESGKLELEFKPFNLRDCLETAVDLFAPKAVQKGLELTYFIDPEVPSTL-----V 268
Query: 509 GDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRN 568
GD +L+QIL NL+SN++KFT G +SV V+ C +N
Sbjct: 269 GDVTRLRQILINLLSNAIKFTDVGEVSVSVKVE-----------------HCYVTNSTQN 311
Query: 569 KEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLG 628
++ H+ +P + F V DTG GIPKD+ N +F+ F Q+ + G G
Sbjct: 312 QDS-------HT---SPTVCIL-FSVKDTGIGIPKDRFNRLFQRFSQLDSSTTRQYGGTG 360
Query: 629 LGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWP 688
LGL I + + +M GEI + D GE G F F V+L+ D D +P P
Sbjct: 361 LGLIISKQLSEMMGGEIWV-DSTLGE-GSTFSFCVVLSV-------DQDASEPNLITPQP 411
Query: 689 Q 689
Q
Sbjct: 412 Q 412
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 14/129 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ + KV +L +LG + ++ NG+E D + + YD I+M
Sbjct: 562 RILLAEDNIVNQKVELLLLKRLGYQADLVSNGQEVLDAISR-----------QSYDVILM 610
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G ATR I + Y IIALTA+AM + AGMD +++KP+++
Sbjct: 611 DVQMPEMDGLTATRYIC---QNYSQRPWIIALTANAMQEDRETCLKAGMDDYISKPIRQA 667
Query: 1084 KLLDVVKSI 1092
L+ V K I
Sbjct: 668 DLIRVFKMI 676
Score = 46.2 bits (108), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 13/127 (10%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L+V+D L++ +L G + +GK+A + V P D I++D
Sbjct: 13 ILIVDDIPDNLRILFTMLANQGYEVRRVISGKQALNAV-----------NTDPPDLILLD 61
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
+MP M+G+E + ++ +E+ IP+I L+A K + G ++TKP Q ++
Sbjct: 62 IKMPEMDGYEVCQRLKADEK--TAEIPVIFLSALDEVWDKVKAFEVGGVDYITKPFQLEE 119
Query: 1085 LLDVVKS 1091
++ VK+
Sbjct: 120 VIARVKT 126
>gi|428215970|ref|YP_007089114.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004351|gb|AFY85194.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1277
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 148/304 (48%), Gaps = 15/304 (4%)
Query: 365 KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
+AA+ ++ +KQ A E AE + K+ LA SH++R + A+IG+ L D N
Sbjct: 693 RAARSQLAEQNQSLKQ--ARESAEVANRAKSEFLATMSHEIRTPMNAVIGMTGLLL-DMN 749
Query: 425 PGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHV 484
+ + + IRT LL I+N +++ SKIE+GK+EL FNL +EE +D++
Sbjct: 750 LTEEQRDYIDTIRTSGDALLTIINDILDFSKIESGKLELENHPFNLQTCIEEALDLFAPK 809
Query: 485 GIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
+KG++++ V + D +L+QIL NL+ NS+KFT G I V + +
Sbjct: 810 AAEKGLELLY---QIEVRTPQKIISDVTRLRQILVNLIGNSVKFTHTGEIVVSVNATRLT 866
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
+++ ++ L N + L + P +F+F + DTG GIP
Sbjct: 867 S-----PTSQAKLATPLVSADPGNGDKPSGLQPRSPDQSPPVAYEFQFSIRDTGIGIPSH 921
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
+++ +F F QV + G GLGL I + + LM G + I +E GV F
Sbjct: 922 RRDRLFLPFSQVDASTTRQFGGTGLGLAICKRLSELMGGRMWIESEE----GVGSTFYFT 977
Query: 665 LTAV 668
L A+
Sbjct: 978 LIAL 981
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 13/131 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ + KV +L ++G + +V NG E + + + L YD I+M
Sbjct: 1155 RILLAEDNIVNQKVALRILDRMGYRADVANNGLEVLEALQR-----------LSYDVILM 1203
Query: 1024 DCEMPVMNGWEATRLI-RKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
D +MP M+G EATR I +K E ++ P IIA+TA+AM G + AGMD ++TKP++
Sbjct: 1204 DVQMPEMDGLEATRQICKKYGEGLQLNKPKIIAMTANAMQGDREICLAAGMDDYITKPIR 1263
Query: 1082 KDKLLDVVKSI 1092
++L+ V+ +
Sbjct: 1264 LEELIKVLSVV 1274
>gi|20279446|gb|AAM18726.1|AC092548_4 putative histidine kinase [Oryza sativa Japonica Group]
Length = 925
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 156/315 (49%), Gaps = 46/315 (14%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
+AE + K+ LA SH++R + ++G++++ D T + + + K L+
Sbjct: 328 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM-DTELDTTQRDFVVTAQESGKSLIN 386
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N V++++KIE+GK+EL F++ +L+ VV ++ KG+++ +VL S
Sbjct: 387 LINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIEL-------AVLVSD 439
Query: 506 HVR----GDRVKLKQILCNLVSNSMKFTSEGHISVRA----AVKKKSFKQD--------I 549
V GD + +QI+ NLV NSMKFT +GHI +R VK+K D +
Sbjct: 440 QVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEV 499
Query: 550 IASNRNVIS-KCLSKLFFRNK----EGF----DDLDALHSVERNPNLLQFEFEVDDTGKG 600
A+++N + LS L N E F D DA+ SV NLL V+DTG G
Sbjct: 500 TANSKNTMPYNTLSGLEVANNRKTLESFRMFKDSSDAIDSV----NLL---VTVEDTGIG 552
Query: 601 IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
I KD Q IF F+Q + G G+GL I + +V LM GEI K GV
Sbjct: 553 ITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKP----GVSST 608
Query: 661 FNVLLTAVCERERPD 675
F+ TA+ + R D
Sbjct: 609 FS--FTAIFKENRKD 621
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 10/86 (11%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK LVV+D+A+ V + L K GA +GKEA +S L+ K +D
Sbjct: 792 LTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEA-------ISRLQPPHK---FD 841
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQ 1045
MD +MP M+G+EATRL+R E +
Sbjct: 842 ACFMDVQMPEMDGFEATRLVRSVESK 867
>gi|417554678|ref|ZP_12205747.1| GHKL domain protein [Acinetobacter baumannii Naval-81]
gi|417562565|ref|ZP_12213444.1| GHKL domain protein [Acinetobacter baumannii OIFC137]
gi|421201292|ref|ZP_15658451.1| GHKL domain protein [Acinetobacter baumannii OIFC109]
gi|421454193|ref|ZP_15903542.1| GHKL domain protein [Acinetobacter baumannii IS-123]
gi|421634178|ref|ZP_16074797.1| GHKL domain protein [Acinetobacter baumannii Naval-13]
gi|421805706|ref|ZP_16241582.1| GHKL domain protein [Acinetobacter baumannii WC-A-694]
gi|395525147|gb|EJG13236.1| GHKL domain protein [Acinetobacter baumannii OIFC137]
gi|395563324|gb|EJG24977.1| GHKL domain protein [Acinetobacter baumannii OIFC109]
gi|400212960|gb|EJO43917.1| GHKL domain protein [Acinetobacter baumannii IS-123]
gi|400391095|gb|EJP58142.1| GHKL domain protein [Acinetobacter baumannii Naval-81]
gi|408704896|gb|EKL50252.1| GHKL domain protein [Acinetobacter baumannii Naval-13]
gi|410407968|gb|EKP59943.1| GHKL domain protein [Acinetobacter baumannii WC-A-694]
Length = 935
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 149/356 (41%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F E E
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIE 530
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
H HF E Q++ ++A VL+ Y+EN
Sbjct: 531 ------------------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L K +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVKTTKALSGQEALNIIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|375137100|ref|YP_004997750.1| GacS-like sensor kinase protein [Acinetobacter calcoaceticus
PHEA-2]
gi|325124545|gb|ADY84068.1| GacS-like sensor kinase protein [Acinetobacter calcoaceticus
PHEA-2]
Length = 935
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 150/356 (42%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLNNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFVV------- 523
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
D D E H HF E Q++ ++A VL+ Y+EN
Sbjct: 524 DEDYEIE-----------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 86.3 bits (212), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q + Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLNDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L + +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVRTTKAISGQEALNLIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|434399975|ref|YP_007133979.1| multi-sensor signal transduction histidine kinase [Stanieria
cyanosphaera PCC 7437]
gi|428271072|gb|AFZ37013.1| multi-sensor signal transduction histidine kinase [Stanieria
cyanosphaera PCC 7437]
Length = 811
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 135/255 (52%), Gaps = 20/255 (7%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L AI+G +L +D++ +NL +I + + LL ++N V+EM
Sbjct: 465 KSEFLANMSHELRTPLNAILGFTQLLLQDSSLNPKHQQNLEIINSSGEHLLTLINDVLEM 524
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
S+++AG++ L E F+L Q+L ++ M+ K + + + CD ++ ++ D+ K
Sbjct: 525 SRLQAGRVTLQLESFDLYQMLNDLEVMFKPRAEAKNLQLSFE-CDANI--PQFIQTDQQK 581
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
L+Q+L NL+SN++KFT G I++R A S K + N I + F +
Sbjct: 582 LRQVLINLLSNALKFTQVGAIALRVAAFSFSTK-----AQSNTIEGINASSTFLTQ---- 632
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
P + FEV+DTG GI + SIF+ F Q K+ H EG GLGL I
Sbjct: 633 ------GTAHQPQ-MTLTFEVEDTGCGIAASEFESIFDAFAQAKKVPKEH-EGTGLGLAI 684
Query: 634 VQSMVHLMKGEIAIA 648
+ L+ G+I+++
Sbjct: 685 SNQFIRLLGGDISVS 699
>gi|374299638|ref|YP_005051277.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
gi|332552574|gb|EGJ49618.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
Length = 1143
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 142/294 (48%), Gaps = 58/294 (19%)
Query: 376 ALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCH----EDANPGTDLAE 431
A ++ + A EQAE S K+ LA SH++R ++ I+G+ ++ ED A+
Sbjct: 616 ATLEILQAKEQAEAASRAKSEFLANMSHEIRTPISGILGMADVLLTTRLEDRQ-----AQ 670
Query: 432 NLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKK--G 489
+ L++ + LL I+N ++++SKIEA K++L E FNL L VVD + +KK G
Sbjct: 671 YIALLKDSANALLIIINDILDLSKIEARKLKLEPELFNLDAALRAVVDPFVLQTVKKGLG 730
Query: 490 VDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDI 549
++V LDP + H GD ++L QIL NL+SN++KFTS G +++R + S
Sbjct: 731 LEVHLDP---GLPPKLH--GDPIRLGQILTNLLSNALKFTSRGGVTLRVVPVQVS----- 780
Query: 550 IASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSI 609
G D + FEV DTG GIP DKQ+ +
Sbjct: 781 ---------------------GVD--------------CELRFEVQDTGLGIPSDKQDRL 805
Query: 610 FEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
F F Q+ + G GLGL I ++ V +M G I + E +G F F
Sbjct: 806 FRSFSQLDSSYAKQYCGTGLGLAISKNFVEMMGGRIWVESIEG--QGSLFAFTA 857
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 68/117 (58%), Gaps = 12/117 (10%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L+ ED+ I + +LG G + V NG+EA L L +E +D ++MD
Sbjct: 887 ILLAEDNRINQEFLVHMLGAAGHRSRVAANGREA-------LQALAEE----TFDLVLMD 935
Query: 1025 CEMPVMNGWEATRLIRKEEEQ-YDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+MP M+G E TR IR+ + + +D IPIIA+TA+AM G + + AGMD +++KP+
Sbjct: 936 VQMPEMDGLETTRRIREHDGRLFDPAIPIIAVTAYAMKGDQERFLAAGMDGYVSKPV 992
>gi|298292394|ref|YP_003694333.1| integral membrane sensor hybrid histidine kinase [Starkeya novella
DSM 506]
gi|296928905|gb|ADH89714.1| integral membrane sensor hybrid histidine kinase [Starkeya novella
DSM 506]
Length = 1129
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 180/389 (46%), Gaps = 93/389 (23%)
Query: 310 STLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKR 369
+ L + Q+ + ++ +GS+ L + +L+ IAGV + ++ ++A+ ++R
Sbjct: 586 AILGVIYFQATFAPVAEAEAVGSV------LFTLYFILLIIAGVAA---WLFVLAQESRR 636
Query: 370 -----EMFLCAALIKQMNATEQAERK-----------SMNKTFALAKASHDVRASLAAII 413
A L++++ A ++ + K ++ K+ + SH++R L AI+
Sbjct: 637 VAQEESNRQTALLMREIEAHKRTDAKLQKAKEAAEAANLAKSRYVVGISHELRTPLNAIL 696
Query: 414 GLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473
G +L D + + + ++R ++ L G+++ ++++SKIEAG++ L +E +A
Sbjct: 697 GYAQLLERDTSIPPHRRDAIRVVRRSAEHLSGLIDGLLDISKIEAGRLHLTRDEVRIADF 756
Query: 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRV---------KLKQILCNLVSN 524
L+++VDM+ KG+D V +VR DR+ +L+Q+L NL+SN
Sbjct: 757 LDQLVDMFRLQATAKGIDFV------------YVRPDRLPAVVYTDEKRLRQVLINLLSN 804
Query: 525 SMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERN 584
++KFT G +++R S RN ++
Sbjct: 805 AIKFTDRGRVALR-------------VSYRNQVA-------------------------- 825
Query: 585 PNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGE 644
EFEV+D+G GIP IFE F + + G+GLGL I + + +M GE
Sbjct: 826 ------EFEVEDSGIGIPAADHRRIFEPFERGERAGTYSTAGIGLGLTITKLLTEIMGGE 879
Query: 645 IAIADKEPGERGVCFRFNVLLTAVCERER 673
I++ PGE G F+ ++L+ V R
Sbjct: 880 ISLTST-PGE-GSSFKVKLMLSEVTNPSR 906
Score = 42.0 bits (97), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+ LV +DDA + +L LG +G +A D V + D ++
Sbjct: 923 RTVLVADDDAAHRDLMHELLVPLGFTVLAASDGVQALDMV-----------RQWEPDALL 971
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGM---DFHLTKP 1079
+D MP +NGWE R +R +E Y + I+ ++A+ A +I+ G+ D HL KP
Sbjct: 972 LDISMPGLNGWEVVRQLR--DEGY-ARLRILMISAN-----AGEILGDGLAQHDDHLVKP 1023
Query: 1080 LQKDKLLD 1087
+ LL+
Sbjct: 1024 VHLRTLLE 1031
>gi|293610389|ref|ZP_06692690.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427424185|ref|ZP_18914319.1| GHKL domain protein [Acinetobacter baumannii WC-136]
gi|292827621|gb|EFF85985.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425698925|gb|EKU68547.1| GHKL domain protein [Acinetobacter baumannii WC-136]
Length = 935
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 150/356 (42%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLNNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFVV------- 523
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
D D E H HF E Q++ ++A VL+ Y+EN
Sbjct: 524 DEDYEIE-----------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 92/170 (54%), Gaps = 9/170 (5%)
Query: 924 NKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAV 981
N L + A S +Q ++ Q + ++ NG+ L V+D L V A+
Sbjct: 622 NMLTEYRARPLYQPLSRSGLIQLLSDQPVFEEEQQDFNGQGLHILAVDDHLPNLIVLEAL 681
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
LG+L + +G+EA + + + R + K P+D + MD +MPVM+G + TR IR
Sbjct: 682 LGELNVRTTKVISGQEALNLIQE-----RIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRS 736
Query: 1042 EEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 737 LESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|449445544|ref|XP_004140532.1| PREDICTED: histidine kinase 3-like [Cucumis sativus]
gi|449518188|ref|XP_004166125.1| PREDICTED: histidine kinase 3-like [Cucumis sativus]
Length = 1010
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 157/293 (53%), Gaps = 20/293 (6%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
++AE + K+ LA SH++R + ++G++ L D + + + + K L+
Sbjct: 406 KRAEDADIAKSQFLATVSHEIRTPMNGVLGMLHLLM-DTDLDVTQQDYVKTAQDSGKALV 464
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGS 504
++N V++ +KIE+GK+EL FNL L++++ ++ +KG+++ + D SV +
Sbjct: 465 SLINEVLDQAKIESGKLELEAIPFNLRADLDDILSLFSGKSQEKGLELAVYVSD-SVPET 523
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ-DI-IASNRN------- 555
+ GD + +QI+ NLV NS+KFT +GHI V + K+ + D+ I S++N
Sbjct: 524 --LVGDPGRFRQIITNLVGNSIKFTEKGHIFVTVNLVKEVIESIDLEIESSKNSTLSGYP 581
Query: 556 VISKCLSKLFFR--NKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
V ++ LS FR ++EG A H + P+L+ V+DTG GIP + Q+ IF F
Sbjct: 582 VANRRLSWAGFRTFSQEGST---ACHFMTSPPDLINLMVSVEDTGVGIPLEAQSRIFTPF 638
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
+QV+ + G G+GL I + +V LMKGEI + G F F + T
Sbjct: 639 MQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVP--KIGSTFTFTAVFT 689
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 30/145 (20%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRN-GKEAFDHVCKILSDLRKEGKALPY 1018
L G+K LV++D+ + V + L + GA VC N G++A ++L+ +
Sbjct: 861 LLGRKILVIDDNKVNRIVAAGALQRYGADV-VCENSGRDAI----QLLTPPHH------F 909
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEE--------------EQYD----VHIPIIALTAHAM 1060
D MD +MP M+G+EATR IR+ E E Y+ +PI+A+TA +
Sbjct: 910 DACFMDIQMPEMDGFEATRRIREIEHRINDGIQVGELSKEAYENTCYWRVPILAMTADVI 969
Query: 1061 AGVASKIVDAGMDFHLTKPLQKDKL 1085
+ + GMD +++KP + ++L
Sbjct: 970 QATHEECLRCGMDGYVSKPFEVERL 994
>gi|71908460|ref|YP_286047.1| PAS [Dechloromonas aromatica RCB]
gi|71848081|gb|AAZ47577.1| PAS protein [Dechloromonas aromatica RCB]
Length = 764
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 144/306 (47%), Gaps = 54/306 (17%)
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
L+A+ E L L + A+E AER KT LA SH++R L AIIG+ H
Sbjct: 358 LLARDISEEQALATYLTR---ASEAAERAEQMKTAFLANMSHEIRTPLNAIIGM---AHI 411
Query: 422 DANPGTDLAEN--LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVD 479
+ D A+ +G I + LLG++ +V++MSKIEAG++EL + ++ EV+
Sbjct: 412 LSRTELDTAQKKYVGHIDAAGEHLLGLITNVLDMSKIEAGRLELENIPLAVENIVFEVLS 471
Query: 480 MYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAA 539
M +KG+DV + D + GD V+L+Q L N VSN++KFT++G I VR
Sbjct: 472 MVADQAAEKGLDVRIGELD----APSGLVGDPVRLRQALLNYVSNAIKFTADGSIDVR-- 525
Query: 540 VKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGK 599
VI++ +S+ + + FEV DTG
Sbjct: 526 ----------------VITQAVSE----------------------DSVLLRFEVADTGI 547
Query: 600 GIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
GI + ++ IF F Q + G GLGL I + + LM GE+ ++ PG+ G F
Sbjct: 548 GISAEARDEIFSAFRQADNSTTRRYGGTGLGLAITRQLAELMGGEVGVSST-PGQ-GSLF 605
Query: 660 RFNVLL 665
F L
Sbjct: 606 WFTASL 611
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 13/143 (9%)
Query: 947 VAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKIL 1006
++A+S + G +FL+VED+ I V A+L +L + + ++G+EA D +
Sbjct: 626 LSAESAEVVLARDFAGCRFLLVEDEVINRHVAEAILSRLNCEIDTAKDGREAVDLASR-- 683
Query: 1007 SDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASK 1066
+D Y I+MD MP M G EAT+ IR+ V PI+ALTA+A A +
Sbjct: 684 ND---------YALILMDMLMPNMGGLEATQCIRQLPGGEKV--PIVALTANAFAYEKQR 732
Query: 1067 IVDAGMDFHLTKPLQKDKLLDVV 1089
+D GM+ +TKP++ + L + +
Sbjct: 733 CLDIGMNGFVTKPIRPEVLFETM 755
>gi|317483762|ref|ZP_07942704.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
gi|316924994|gb|EFV46138.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
Length = 988
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 139/302 (46%), Gaps = 46/302 (15%)
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
L A+ R L A + + + ++A + K+ LA SH++R + IIGL L +
Sbjct: 590 LEAQVQTRTAELAARNAELLKSQQEALEATRAKSEFLATMSHEIRTPMNGIIGLTYLALQ 649
Query: 422 DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481
P +A+ L I +K LL I+N +++ SK+E+GKM+ E F L+++L+ + M+
Sbjct: 650 RECPAA-IADYLAKIDVTAKTLLRIINDILDFSKVESGKMDFEEIPFTLSEVLDNTLQMF 708
Query: 482 YHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541
H +KG+ + D +G + GD +L QIL NLV N+MKFT EG ++
Sbjct: 709 THAVREKGLSLRFDVGEGV---PQSLVGDPTRLGQILLNLVGNAMKFTHEGSVT------ 759
Query: 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGI 601
LF R VE + + F V DTG GI
Sbjct: 760 ----------------------LFVR------------CVETDQQTVTLGFAVRDTGIGI 785
Query: 602 PKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
P DK S+F+ F+Q + G GLGL I + +V M G I + + +G F F
Sbjct: 786 PADKLPSLFQPFIQADMSVSRRYGGTGLGLAIARVLVQHMGGTIHV--RSVVGKGSTFSF 843
Query: 662 NV 663
+
Sbjct: 844 TL 845
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
PL+G + L+ ED+ I V + +L G +V NG EA D ++ Y
Sbjct: 868 PLDGLRVLLAEDNDINQIVATEILKMKGIAVDVASNGLEAVDM-----------ARSGAY 916
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D I+MD +MP ++G EATR IR + IPIIA+TAH M G A K ++AGM H+ K
Sbjct: 917 DVILMDIQMPELDGIEATRRIRA----FLPDIPIIAMTAHTMKGDAEKCLEAGMQDHIAK 972
Query: 1079 PLQKDKLLDVVK 1090
P+ + L ++
Sbjct: 973 PIDPETLFAALQ 984
>gi|359437875|ref|ZP_09227924.1| hypothetical protein P20311_1967 [Pseudoalteromonas sp. BSi20311]
gi|358027362|dbj|GAA64173.1| hypothetical protein P20311_1967 [Pseudoalteromonas sp. BSi20311]
Length = 1573
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 141/288 (48%), Gaps = 47/288 (16%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
QA+ + K+ LA SH++R + ++G++EL + P + +G+ + + LL
Sbjct: 1049 QAKEAGVAKSQFLATMSHEIRTPMNGVLGMLELIQLEPLP-KHVETKVGIAKQSAHSLLA 1107
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N +++ SK+EAGK+EL FN L+ V + KG++++LD +
Sbjct: 1108 VINDILDFSKVEAGKVELESINFNARDLIGYVAEAQALSAQGKGIEIILDLV---AVEPS 1164
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
H++GD +++Q+L NL+SN++KFTS+G + + A++K
Sbjct: 1165 HLKGDPSRIRQVLTNLLSNAVKFTSQGEVVISASIKP----------------------- 1201
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
+G L+F+ V D+G GI K+KQ +F F QV +
Sbjct: 1202 --TDQG----------------LEFKVSVKDSGIGISKEKQKQLFSPFTQVDASTTREYG 1243
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL I + + LM G I+++ E G +G F ++L E+ER
Sbjct: 1244 GTGLGLAICKQLCELMGGYISVS-SEIG-KGSVFTAQMILEEGEEQER 1289
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 83/137 (60%), Gaps = 18/137 (13%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
++KP + L+VED+ I +V++ +L KL + V NG++A + ILS K +
Sbjct: 1446 ADKP---AEILLVEDNPINQQVSTLMLKKLSCEVTVAENGQQAIE----ILSAHEKGHFS 1498
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEE--EQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
L ++MDC+MPVM+G+ AT IR EQ+ I IIALTA+AM + +DAGMD
Sbjct: 1499 L----VLMDCQMPVMDGYSATTAIRNNAAGEQHKA-IKIIALTANAMESDKQRCIDAGMD 1553
Query: 1074 FHLTKPLQKDKLLDVVK 1090
+L+KP+Q LDV+K
Sbjct: 1554 DYLSKPIQ----LDVLK 1566
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
+N LVV+D+ V S LG GA E+ + K+A + + + R + + YD
Sbjct: 1296 INELTILVVDDNQTNRLVISEQLGHWGAHVELASDAKQALE-----MCENRIKNQQKVYD 1350
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++D +MP M+G E +++ K + Y +P++ +T+ A A + DAG + KP
Sbjct: 1351 IAVLDMQMPDMDGIELCKIL-KADANYQP-MPLVMMTSIAGMEDAQRYSDAGFQAYFPKP 1408
Query: 1080 LQKDKLLDVVKSIDETMEKQ 1099
+ L+ + I +KQ
Sbjct: 1409 VTTADLISALSVIANNPQKQ 1428
>gi|307155062|ref|YP_003890446.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
gi|306985290|gb|ADN17171.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
Length = 1305
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 144/293 (49%), Gaps = 49/293 (16%)
Query: 375 AALIKQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENL 433
A LI+++ A E+A+ + K+ LA SH++R L AI+G +L D++ + +
Sbjct: 816 AELIEELKKAKERADAANQAKSEFLANMSHELRTPLNAILGFTQLLARDSSLNQKQQDFV 875
Query: 434 GLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV 493
G+I + LL +LN V+EMSKIEAG++ L E +F+L +LL + +M+ K + ++
Sbjct: 876 GIIGRSGEHLLSLLNDVLEMSKIEAGRITLNENDFDLYRLLNILEEMFQLKAQSKNLQLI 935
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
CD V +++ D KL+Q+L NL+ N +KFT G + +R V
Sbjct: 936 FH-CDPDV--PQYIKTDESKLRQVLINLIGNGIKFTETGSVMLRVRV------------- 979
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
S E + +L FEV+DTG GI ++ + +F+ F
Sbjct: 980 --------------------------SPENSQAIL---FEVEDTGPGIGTEELDILFQAF 1010
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
VQ + QEG GLGL I Q V LM G I++ +G F F + +T
Sbjct: 1011 VQTV-SGRKSQEGTGLGLPISQKFVELMGGNISV--NSTLHKGSTFSFEIPVT 1060
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 21/136 (15%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV +D + +L LG + NG++A + ++ + I M
Sbjct: 1087 RILVADDKWESRLMLVNLLSPLGFQVREAENGQQAVEI-----------WESWHPNLIWM 1135
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIP----------IIALTAHAMAGVASKIVDAGMD 1073
D MPV++G++ATR IR++E +P IIALTA + +V AG D
Sbjct: 1136 DMRMPVLDGYQATRQIREKESLSAELVPHPSQNQRPTKIIALTASVLDTHKMTVVKAGCD 1195
Query: 1074 FHLTKPLQKDKLLDVV 1089
+ KP +K+K+ D +
Sbjct: 1196 DFVAKPFRKEKIFDKI 1211
>gi|433660202|ref|YP_007301061.1| sensory box sensor histidine kinase [Vibrio parahaemolyticus
BB22OP]
gi|432511589|gb|AGB12406.1| sensory box sensor histidine kinase [Vibrio parahaemolyticus
BB22OP]
Length = 873
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 155/313 (49%), Gaps = 65/313 (20%)
Query: 368 KREM--FLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP 425
+REM L +AL K AT+ K+ LA SH++R + AI+G+ E+ E+ N
Sbjct: 354 RREMEKRLSSALDKSKKATQA-------KSEFLANMSHEIRTPMNAIMGISEILLENENR 406
Query: 426 GTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVG 485
+ E L L+ + +L+ I+N +++ SK+EAGK+ LVEEEF+L L+E + +
Sbjct: 407 -REPRELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLIESCTALCAYQA 465
Query: 486 IKKGVDVVLD-PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
KK + +++D P + + V GD+ ++ QIL NL+ N++KFT EGH+ ++ + +
Sbjct: 466 DKKNLKLLVDIPLAMNTV----VVGDKGRINQILLNLLGNAVKFTDEGHVLLKVSESE-- 519
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
L F+F V DTG GIP+D
Sbjct: 520 -------------------------------------------LGFDFSVSDTGIGIPED 536
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
+ I ++F QV +A EG GLGL I + ++ + GE+ + +G CF F++
Sbjct: 537 RLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCV--HSDFGKGSCFSFSLQ 594
Query: 665 LTAVCERERPDTD 677
L +R +P ++
Sbjct: 595 LP---KRSQPHSE 604
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LV ED I + +L G K + +G EA + K L D ++ D
Sbjct: 743 LLVAEDSHINRILIEKMLQDTGVKLTLAEDGVEAVELY-----------KQLSPDLVITD 791
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
MP +G+ T+ IR+ +E + PI+A +AHAM K + GM+ +LTKP+QK
Sbjct: 792 ISMPNKDGFGVTKDIRELQENGEFPWCPIVAFSAHAMQEEQQKSIALGMNDYLTKPVQKS 851
Query: 1084 KLLDVV 1089
LLD++
Sbjct: 852 DLLDMI 857
>gi|333984092|ref|YP_004513302.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
gi|333808133|gb|AEG00803.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
Length = 1099
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 138/281 (49%), Gaps = 53/281 (18%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAE--NLGLIRTCSKDLL 444
AE + K+ LA SH++R L AI+G + + NP A+ N+ +I + LL
Sbjct: 640 AEAANKAKSVFLANMSHELRTPLNAILGFSSIMRK--NPLLPEADRRNVDIINRSGEHLL 697
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGS 504
++N ++EM+KIEAG+++L EE F+L +L +V DM +K +++ +D
Sbjct: 698 TLINDILEMAKIEAGRIQLEEEPFDLGGMLCDVTDMMQVRAKEKQLELSIDQSSDF---P 754
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
++ GD+ +L+Q+L NLV N +KFT G +++R K N +S L
Sbjct: 755 RYIVGDQARLRQVLINLVGNGLKFTEHGGVTIRLGTKN------------NAVSHLL--- 799
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
EV+DTG GI + Q IFE FVQ+ +TA
Sbjct: 800 ---------------------------IEVEDTGPGIAPEDQQRIFEPFVQLGKTA--DN 830
Query: 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+G GLGL I Q V LMKG +++ + +G FR ++ L
Sbjct: 831 KGTGLGLSITQQFVKLMKGRLSL--ESTLGKGSLFRIDLPL 869
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV ED + +L LG + + NG+EA + + R P+ I+M
Sbjct: 899 RILVAEDQLDNRLLLVNLLEPLGFQVKHAENGREA----VTLFQEWR------PH-LILM 947
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP+M+G EAT++IR+ E V I+A+TA A + ++++ AGMD ++KP Q
Sbjct: 948 DRQMPIMDGVEATKVIRRLAEGRQVK--IVAVTASAFSEQRTELLIAGMDSFISKPFQAG 1005
Query: 1084 KLLDVVKSI 1092
++ + + S+
Sbjct: 1006 EIYECLSSL 1014
>gi|417322732|ref|ZP_12109266.1| putative sensory box sensor histidine kinase/response regulator
[Vibrio parahaemolyticus 10329]
gi|328470886|gb|EGF41797.1| putative sensory box sensor histidine kinase/response regulator
[Vibrio parahaemolyticus 10329]
Length = 873
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 155/313 (49%), Gaps = 65/313 (20%)
Query: 368 KREM--FLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP 425
+REM L +AL K AT+ K+ LA SH++R + AI+G+ E+ E+ N
Sbjct: 354 RREMEKRLSSALDKSKKATQA-------KSEFLANMSHEIRTPMNAIMGISEILLENENR 406
Query: 426 GTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVG 485
+ E L L+ + +L+ I+N +++ SK+EAGK+ LVEEEF+L L+E + +
Sbjct: 407 -REPRELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQA 465
Query: 486 IKKGVDVVLD-PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
KK + +++D P + + V GD+ ++ QIL NL+ N++KFT EGH+ ++
Sbjct: 466 DKKNLKLLVDMPLAMNTV----VVGDKGRINQILLNLIGNAVKFTDEGHVLLKVR----- 516
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
++ GFD F V DTG GIP+D
Sbjct: 517 ----------------------ESEHGFD------------------FSVSDTGIGIPED 536
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
+ I ++F QV +A EG GLGL I + ++ + GE+ + +G CF F++
Sbjct: 537 RLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCV--HSDFGKGSCFSFSLQ 594
Query: 665 LTAVCERERPDTD 677
L +R +P ++
Sbjct: 595 LP---KRSQPHSE 604
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LV ED I + +L G K + +G EA + K L D ++ D
Sbjct: 743 LLVAEDSHINRILIEKMLQDTGVKLTLAEDGVEAVELY-----------KQLSPDLVITD 791
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
MP +G+ T+ IR+ +E + PI+A +AHAM K + GM+ +LTKP+QK
Sbjct: 792 ISMPNKDGFGVTKDIRELQENGEFPWCPIVAFSAHAMQEEQQKSIALGMNDYLTKPVQKS 851
Query: 1084 KLLDVV 1089
LLD++
Sbjct: 852 DLLDMI 857
>gi|444427798|ref|ZP_21223166.1| histidine kinase [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444238949|gb|ELU50532.1| histidine kinase [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 641
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 164/365 (44%), Gaps = 55/365 (15%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A ++AE + K+ LA SH++R + IIG+ L D + + +I + S
Sbjct: 232 QARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLLG-DTKLDEQQKDFVSIINSSSN 290
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
L+ I++ +++ SKIEAGK+EL +NL LL EV ++ +KG+ +V CD
Sbjct: 291 SLMVIIDDILDFSKIEAGKIELEATTYNLLDLLHEVGRLHTVKAQQKGLQLV---CDIDP 347
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
V+GD +LKQ+L NL+SN++KFT GH+ + +
Sbjct: 348 QLPLEVKGDMGRLKQVLSNLLSNAVKFTERGHVKLMVS---------------------- 385
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
V R ++ F V D+G GI K+ Q ++FE+F Q +
Sbjct: 386 ------------------QVSRKTDVASVHFRVVDSGIGIAKENQQTVFEKFQQADGSTT 427
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDP 681
G GLGL I S+V +M GEI + EPG G F F + L VC++ P
Sbjct: 428 RKYGGTGLGLAICNSLVEVMGGEIRLT-SEPG-LGSYFEFTIPLNIVCDKSI------SP 479
Query: 682 RTHN--DWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIV 739
+T N D+P G+ + K G IL + + + R + L ++V +
Sbjct: 480 QTPNVFDFP-NGMSNAIVAEHIQTTKGVGKPWILVVEDTAVNQKVVRMMLEKLGMQVNVA 538
Query: 740 KQEKN 744
+ K+
Sbjct: 539 EHGKD 543
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 13/125 (10%)
Query: 962 GKKF-LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
GK + LVVED A+ KV +L KLG + V +GK+A ++ + +D
Sbjct: 507 GKPWILVVEDTAVNQKVVRMMLEKLGMQVNVAEHGKDAL-----------RQCQTHQFDL 555
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MDC+MPVM+G+ AT IRK E + +PIIAL+A+ + DAGM+ + KP+
Sbjct: 556 ILMDCQMPVMDGFIATENIRKMGE-WGQQVPIIALSANVIKEDQQSCFDAGMNEFVAKPV 614
Query: 1081 QKDKL 1085
K++L
Sbjct: 615 TKERL 619
>gi|408373408|ref|ZP_11171105.1| phosphotransferase-histidine kinase family protein [Alcanivorax
hongdengensis A-11-3]
gi|407766865|gb|EKF75305.1| phosphotransferase-histidine kinase family protein [Alcanivorax
hongdengensis A-11-3]
Length = 834
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 142/311 (45%), Gaps = 59/311 (18%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
A+ +S K LA+ SH++R L +IGL EL E P E +GLI + + L +
Sbjct: 331 AKAESDAKGQFLARMSHEIRTPLNGVIGLAELLRE-TEPTPRQQEYIGLIESAGRTLSAL 389
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGS 504
+N V++ +KIEAGK++L +EEF+L L+ E M+ G ++ +DP
Sbjct: 390 INDVLDFAKIEAGKLQLEQEEFDLVALMVECAHMFNLPASDNGTLILVNVDPAT-----P 444
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
VRGD ++L+QIL NL+ N++KFT G + + + ++ + + ++
Sbjct: 445 ARVRGDPIRLRQILINLMGNAVKFTPHGRVVLSLSCRRHAGEAPLLT------------- 491
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
F V DTG G+ ++++ +FE+F Q +
Sbjct: 492 ---------------------------FAVTDTGIGLSAEEKSRLFEQFSQASPSTAKRF 524
Query: 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPR-- 682
G GLGL I + +V LM G+I + + G F F++ L VCE P E P
Sbjct: 525 GGTGLGLAISRELVMLMGGDIQV--RSTLGHGARFSFSIQL-PVCEEAVPLMVEPPPDSL 581
Query: 683 ------THNDW 687
T DW
Sbjct: 582 VWDVQGTLGDW 592
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 13/132 (9%)
Query: 951 SDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAK-FEVCRNGKEAFDHVCKILSDL 1009
+D SE+ L+ + LV ED+ + VT L +LG + ++ +G+ A + + SD+
Sbjct: 697 TDTVSSER-LDQLRVLVAEDNPVNQMVTRGYLQRLGIRNVDIAEDGRPAL-AMYRDNSDI 754
Query: 1010 RKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASKIV 1068
++MD +MP M+G+ R IR E + I+AL+AHA+ + I
Sbjct: 755 ---------GLVLMDLDMPDMDGFTCAREIRALERTSGREPVVILALSAHALPEHSKMIR 805
Query: 1069 DAGMDFHLTKPL 1080
+AGMD L KPL
Sbjct: 806 EAGMDGQLIKPL 817
>gi|359446280|ref|ZP_09235975.1| hypothetical protein P20439_2310 [Pseudoalteromonas sp. BSi20439]
gi|358039883|dbj|GAA72224.1| hypothetical protein P20439_2310 [Pseudoalteromonas sp. BSi20439]
Length = 1573
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 141/288 (48%), Gaps = 47/288 (16%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
QA+ + K+ LA SH++R + ++G++EL + P + +G+ + + LL
Sbjct: 1049 QAKEAGVAKSQFLATMSHEIRTPMNGVLGMLELIQLEPLP-KHVETKVGIAKQSAHSLLA 1107
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N +++ SK+EAGK+EL FN L+ V + KG++++LD +
Sbjct: 1108 VINDILDFSKVEAGKVELESINFNARDLIGYVAEAQALSAQGKGIEIILDLV---AVEPS 1164
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
H++GD +++Q+L NL+SN++KFTS+G + + A++K
Sbjct: 1165 HLKGDPSRIRQVLTNLLSNAVKFTSQGEVVISASIKP----------------------- 1201
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
+G L+F+ V D+G GI K+KQ +F F QV +
Sbjct: 1202 --TDQG----------------LEFKVSVKDSGIGISKEKQKQLFSPFTQVDASTTREYG 1243
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL I + + LM G I+++ E G +G F ++L E+ER
Sbjct: 1244 GTGLGLAICKQLCELMGGYISVS-SEIG-KGSVFTAQMILEEGEEQER 1289
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 83/137 (60%), Gaps = 18/137 (13%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
++KP + L+VED+ I +V++ +L KL + V NG++A + ILS K +
Sbjct: 1446 ADKP---AEILLVEDNPINQQVSTLMLKKLSCEVTVAENGQQAIE----ILSAHEKGHFS 1498
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEE--EQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
L ++MDC+MPVM+G+ AT IR EQ+ I IIALTA+AM + +DAGMD
Sbjct: 1499 L----VLMDCQMPVMDGYSATTAIRNNAAGEQHKA-IKIIALTANAMESDKQRCIDAGMD 1553
Query: 1074 FHLTKPLQKDKLLDVVK 1090
+L+KP+Q LDV+K
Sbjct: 1554 DYLSKPIQ----LDVLK 1566
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
+N LVV+D+ V S LG GA E+ + K+A + + + R + + YD
Sbjct: 1296 INELTILVVDDNQTNRLVISEQLGHWGAHVELASDAKQALE-----MCENRIKNQQKVYD 1350
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++D +MP M+G E +++ K + Y +P++ +T+ A A + DAG + KP
Sbjct: 1351 IAVLDMQMPDMDGIELCKIL-KADANYQP-MPLVMMTSIAGMEDAQRYSDAGFQAYFPKP 1408
Query: 1080 LQKDKLLDVVKSIDETMEKQ 1099
+ L+ + I +KQ
Sbjct: 1409 VTTADLISALSVIANNPQKQ 1428
>gi|357405798|ref|YP_004917722.1| Multi-sensor hybrid histidine kinase (modular protein)
[Methylomicrobium alcaliphilum 20Z]
gi|351718463|emb|CCE24134.1| Multi-sensor hybrid histidine kinase (modular protein)
[Methylomicrobium alcaliphilum 20Z]
Length = 1584
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 134/284 (47%), Gaps = 48/284 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A +QAE + K+ +A SH++R L AI+GL L DA ++ L I +
Sbjct: 1009 TARQQAEVANRAKSAFIANMSHEIRTPLNAILGLAHLMRIDATAAQ--SDRLNKIEIAGR 1066
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL I+N ++++SKIEAGK++L +F+L+ +L+ V + K + + LD D SV
Sbjct: 1067 HLLSIINDILDLSKIEAGKIQLNHVDFHLSAVLDHVRSLIAESAHMKNLAITLD--DDSV 1124
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+ GD +L+Q L NL SN++KFT G I +RA +
Sbjct: 1125 PEWLY--GDVTRLRQALLNLASNAVKFTEHGCIEIRAKL--------------------- 1161
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
+E + L+ FEV D+G G+ ++ +F F QV ET
Sbjct: 1162 -------------------LEARDDDLRVRFEVQDSGIGLEAEQLQRLFRPFTQVDETIT 1202
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + LM GE A A+ EPG+ G F F V L
Sbjct: 1203 RQYGGTGLGLSITLRLAELMGGE-AGAESEPGQ-GSTFWFTVHL 1244
Score = 47.0 bits (110), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 13/128 (10%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G++ L+ ED+ I +V +L +G +V +G A + + K YD +
Sbjct: 1272 GQRVLLAEDNPINREVALELLHSVGLSVDVAEDGIAAVE-----------KAKRQHYDLV 1320
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MD +MP M+G AT IR E Y PI+A++A+ + GM+ + KP+
Sbjct: 1321 LMDMQMPNMDGLAATLAIR-ELPGY-CETPILAMSANVFDEDRKSCLAVGMNDFIAKPVD 1378
Query: 1082 KDKLLDVV 1089
++L + +
Sbjct: 1379 LEQLYNTL 1386
>gi|406597687|ref|YP_006748817.1| sensory box histidine kinase/response regulator [Alteromonas
macleodii ATCC 27126]
gi|406375008|gb|AFS38263.1| sensory box histidine kinase/response regulator [Alteromonas
macleodii ATCC 27126]
Length = 1055
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 156/318 (49%), Gaps = 55/318 (17%)
Query: 347 LMFIAGVI-SLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDV 405
L FI VI SLGL + L + ++ L A T+ ++ + K+ LA+ SH++
Sbjct: 378 LYFIGFVILSLGLVVGLWLRTRQQRKALDAL-------TQDLQKATKAKSDFLARMSHEI 430
Query: 406 RASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVE 465
R L AIIGL +L A D NL I S+ LL I+N +++ SKIEAGK+++
Sbjct: 431 RTPLNAIIGLTKLSQR-AAEDKDQQTNLIQIEGASQTLLSIINDILDFSKIEAGKLDIES 489
Query: 466 EEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNS 525
+FNL L+ + + ++ +K ++++ L ++ GD ++++QIL NLVSN+
Sbjct: 490 TQFNLDALVNQTIRLHLGRAEEKHIELIQHISRDVPL---NLIGDPLRIQQILSNLVSNA 546
Query: 526 MKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNP 585
+KFT +G ISV +C H+VE
Sbjct: 547 LKFTEDGLISVSV--------------------RC-----------------THNVED-- 567
Query: 586 NLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEI 645
+Q EFEV DTG G+ ++ +F+ F Q E+ G GLGL I + +V LM GEI
Sbjct: 568 --IQLEFEVKDTGIGLNSTQKALLFQPFNQGDESISRRYGGTGLGLAICKQLVTLMGGEI 625
Query: 646 AIADKEPGERGVCFRFNV 663
+ + + G +G F F V
Sbjct: 626 WV-ESQLG-KGASFHFTV 641
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 71/130 (54%), Gaps = 13/130 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G K L ED+ + KVT +L A EV NG EA + LR++ YD
Sbjct: 801 LRGTKILFAEDNTLNQKVTLGLLNDTHANIEVVSNGFEA-------IKALREDN---SYD 850
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MPVM+G A R IR E + +PIIA+TAHAM K + AGMD H+ KP
Sbjct: 851 VVLMDIQMPVMDGLTAARKIRDE---LKLTLPIIAMTAHAMQQDIDKSLAAGMDGHINKP 907
Query: 1080 LQKDKLLDVV 1089
+ ++ DV+
Sbjct: 908 VDPNRFFDVL 917
Score = 40.4 bits (93), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 26/169 (15%)
Query: 930 GAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVED-----DAIVLKVTSAVLGK 984
GA +++ + QQ+ + S K L+ K L+ +D DAI+ ++ A
Sbjct: 634 GASFHFTVTVKQDASQQIVSPS------KQLSLLKVLIADDIGVSRDAIIESLSVA---- 683
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
K +V GKEA V K+ + + G + PYD +++D MP ++G E ++++E
Sbjct: 684 -NIKADVATGGKEA---VAKMRAAV---GNSAPYDVLILDWNMPDIDGLEVAAIMKQE-- 734
Query: 1045 QYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
+ + P +I L A + + G+ + KP +L+D ++ +
Sbjct: 735 -FSIKPPKVIMLYAFESPHMREQANQLGIRTFIKKPFSTSELVDKLQEL 782
>gi|254412177|ref|ZP_05025952.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196181143|gb|EDX76132.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1263
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 146/312 (46%), Gaps = 29/312 (9%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+++ +E A R K+ L SH++R L I+G +L +D NL +I
Sbjct: 741 VREAKRSEIANRA---KSEFLTNMSHELRTPLNGILGYAQLLKQDTTLTNPQHHNLNIIH 797
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV---VL 494
C + LL ++N +++++KIEA KMEL EF+L L + D++ +K + VL
Sbjct: 798 QCGEHLLTLINDILDLAKIEAQKMELYPTEFHLPNFLHSLADLFQLRAQQKDIIFTYQVL 857
Query: 495 DPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
P V+ D +L+Q+LCNL+SN++KFT G ++ +V ++ D+ ++ R
Sbjct: 858 SPLPNGVI------ADNKRLRQVLCNLLSNAIKFTDRGEVTFTVSVVNRT---DVKSACR 908
Query: 555 N--VISKCLSKLFFRNKEGFDDLDALHSVERNP---------NLLQFEFEVDDTGKGIPK 603
N V SK F N NP + F++ DTG GI
Sbjct: 909 NSAVESKLSQSGFCTNLTSNSQNQVPKPTPTNPVYSRLAKDQHCKTIRFQIKDTGVGIDL 968
Query: 604 DKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ IF F QV + + EG GLGL I Q ++ LM EI + PG +G F F++
Sbjct: 969 SQLTKIFLPFHQVSDHSHA-TEGTGLGLAISQKLIQLMGSEIKVKSI-PG-KGSTFWFDI 1025
Query: 664 LLTAVCERERPD 675
L V P+
Sbjct: 1026 NLPLVSGWHEPN 1037
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 11/127 (8%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K ++V+D+ + + A+L LG FE+ EA D L L+K ++ P D I+
Sbjct: 1052 RKLMIVDDNRVNRTLLRAMLKPLG--FEII----EAVDG----LDCLQKVVESYP-DLIL 1100
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D MP M+G E TR + + D I IAL+A + + + AG L KP++
Sbjct: 1101 IDLVMPEMDGLETTRRMLALPQLQDKDIVAIALSASVYPQIQQESLAAGCRGFLAKPVES 1160
Query: 1083 DKLLDVV 1089
+LLD +
Sbjct: 1161 QQLLDAI 1167
>gi|110331743|dbj|BAE97709.1| cytokinin receptor histidine kinase [Oryza sativa Japonica Group]
gi|222612690|gb|EEE50822.1| hypothetical protein OsJ_31230 [Oryza sativa Japonica Group]
Length = 942
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 156/315 (49%), Gaps = 46/315 (14%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
+AE + K+ LA SH++R + ++G++++ D T + + + K L+
Sbjct: 328 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM-DTELDTTQRDFVVTAQESGKSLIN 386
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N V++++KIE+GK+EL F++ +L+ VV ++ KG+++ +VL S
Sbjct: 387 LINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIEL-------AVLVSD 439
Query: 506 HVR----GDRVKLKQILCNLVSNSMKFTSEGHISVRA----AVKKKSFKQD--------I 549
V GD + +QI+ NLV NSMKFT +GHI +R VK+K D +
Sbjct: 440 QVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEV 499
Query: 550 IASNRNVIS-KCLSKLFFRNK----EGF----DDLDALHSVERNPNLLQFEFEVDDTGKG 600
A+++N + LS L N E F D DA+ SV NLL V+DTG G
Sbjct: 500 TANSKNTMPYNTLSGLEVANNRKTLESFRMFKDSSDAIDSV----NLL---VTVEDTGIG 552
Query: 601 IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
I KD Q IF F+Q + G G+GL I + +V LM GEI K GV
Sbjct: 553 ITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKP----GVSST 608
Query: 661 FNVLLTAVCERERPD 675
F+ TA+ + R D
Sbjct: 609 FS--FTAIFKENRKD 621
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 28/148 (18%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK LVV+D+A+ V + L K GA +GKEA +S L+ K +D
Sbjct: 792 LTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEA-------ISRLQPPHK---FD 841
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHIPIIALTAHAMA 1061
MD +MP M+G+EATRL+R E + + H+PI+A+TA +
Sbjct: 842 ACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHVPILAMTADVIQ 901
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
++ GMD ++ KP ++ +L V
Sbjct: 902 ATFEGCMECGMDGYVAKPFEEQQLYSAV 929
>gi|218184380|gb|EEC66807.1| hypothetical protein OsI_33219 [Oryza sativa Indica Group]
Length = 942
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 156/315 (49%), Gaps = 46/315 (14%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
+AE + K+ LA SH++R + ++G++++ D T + + + K L+
Sbjct: 328 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM-DTELDTTQRDFVVTAQESGKSLIN 386
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N V++++KIE+GK+EL F++ +L+ VV ++ KG+++ +VL S
Sbjct: 387 LINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIEL-------AVLVSD 439
Query: 506 HVR----GDRVKLKQILCNLVSNSMKFTSEGHISVRA----AVKKKSFKQD--------I 549
V GD + +QI+ NLV NSMKFT +GHI +R VK+K D +
Sbjct: 440 QVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEV 499
Query: 550 IASNRNVIS-KCLSKLFFRNK----EGF----DDLDALHSVERNPNLLQFEFEVDDTGKG 600
A+++N + LS L N E F D DA+ SV NLL V+DTG G
Sbjct: 500 TANSKNTMPYNTLSGLEVANNRKTLESFRMFKDSSDAIDSV----NLL---VTVEDTGIG 552
Query: 601 IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
I KD Q IF F+Q + G G+GL I + +V LM GEI K GV
Sbjct: 553 ITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKP----GVSST 608
Query: 661 FNVLLTAVCERERPD 675
F+ TA+ + R D
Sbjct: 609 FS--FTAIFKENRKD 621
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 28/148 (18%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK LVV+D+A+ V + L K GA +GKEA +S L+ K +D
Sbjct: 792 LTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEA-------ISRLQPPHK---FD 841
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHIPIIALTAHAMA 1061
MD +MP M+G+EATRL+R E + + H+PI+A+TA +
Sbjct: 842 ACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHVPILAMTADVIQ 901
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
++ GMD ++ KP ++ +L V
Sbjct: 902 ATFEGCMECGMDGYVAKPFEEQQLYSAV 929
>gi|42521923|ref|NP_967303.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
HD100]
gi|39574453|emb|CAE77957.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
HD100]
Length = 1132
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 147/301 (48%), Gaps = 56/301 (18%)
Query: 371 MFLCAALIKQMNATEQ--------AERKSMNKTFALAKASHDVRASLAAIIGLVELCHED 422
M++ I ++ EQ A + S K+ LA+ SH++R + AI+G+ EL E
Sbjct: 723 MYVTTQDITELRRVEQSLITTKNEALKASQAKSEFLAQMSHEIRTPMNAIMGMAELLKE- 781
Query: 423 ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY 482
D + + + L+ ++N ++++SKIEAG++ + F++ +L+ +V DM
Sbjct: 782 TRLDVDQKYYVTIFCKAGEVLMSLINDILDLSKIEAGEVSIENIPFDMKKLMADVEDMMK 841
Query: 483 HVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKK 542
++KG++ + C+ + S H+ GD KL+Q+L NL+ NS+KFT++G VR + K
Sbjct: 842 PRALEKGLNCI---CEIAPGVSPHLMGDPTKLRQVLINLIGNSIKFTNKGQ--VRLVIGK 896
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
K+D + +IS + DTG GIP
Sbjct: 897 NPSKKDTL-----LIS-----------------------------------ITDTGIGIP 916
Query: 603 KDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
+D+Q+ IF++F Q + G GLGL I +S+V LM G+I + PG G F F
Sbjct: 917 EDRQHMIFQKFSQADNSVTRKYGGTGLGLAISKSLVELMGGQIWFKSR-PGT-GTTFFFT 974
Query: 663 V 663
+
Sbjct: 975 I 975
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 14/104 (13%)
Query: 989 FEV--CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK-EEEQ 1045
FE+ NG +A D + K G+ +D + MD +MP M+G+ AT IR+ E+E
Sbjct: 1035 FEIIEAENGLQAIDQI--------KSGE---FDIVFMDVQMPEMDGYAATDRIREWEKES 1083
Query: 1046 YDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ +PIIALTAHA+A K + AG + H+ KP +KD LL V+
Sbjct: 1084 HKPPVPIIALTAHALAEDRQKSLRAGCNDHIAKPFKKDTLLGVI 1127
>gi|379011380|ref|YP_005269192.1| putative sensor protein [Acetobacterium woodii DSM 1030]
gi|375302169|gb|AFA48303.1| putative sensor protein [Acetobacterium woodii DSM 1030]
Length = 1012
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 137/274 (50%), Gaps = 45/274 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+AE + K+ LA SH++R L I+G+V L +N + EN+ +I+TC
Sbjct: 517 AKEEAESANQAKSEFLANMSHEIRTPLNGIVGMVNLMRL-SNLNQEQQENVKIIKTCVNA 575
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N +++ SK+EAGKME+ + F++ L+E + + KG+++ S
Sbjct: 576 LLNVINDILDFSKMEAGKMEIKIKNFDIKSLIEHTIKAQSSIATNKGIEL---NYAFSAS 632
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+++GD +++QIL NL+SN++KFT +G I V+ K LS
Sbjct: 633 TPRYIKGDFHRIQQILNNLISNAIKFTDDGEIWVKV--------------------KTLS 672
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+ N +Q F V+DTG GI ++ + IFE F QV +
Sbjct: 673 --------------------VDENQVQLLFIVEDTGIGITEENRQRIFESFSQVDGSFTR 712
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAI-ADKEPGER 655
G GLGL I + +V LM G+I + ++ + G R
Sbjct: 713 RFGGTGLGLAITRQLVELMGGKIWVESEADVGSR 746
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 73/127 (57%), Gaps = 15/127 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+ EDD I V S +L + G ++ NG +A + V K YD I+M
Sbjct: 777 KILLTEDDKINQLVISRMLKECGYSVDIANNGFDAENMV-----------KKNNYDIILM 825
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G EAT+ I+K + ++P++A+TA+A+ G K + GMD +++KP++ +
Sbjct: 826 DIQMPEMDGMEATKRIKK----INKNVPVLAMTAYALQGDREKFLSLGMDGYISKPIKVE 881
Query: 1084 KLLDVVK 1090
L++ ++
Sbjct: 882 TLVEEIE 888
>gi|388598994|ref|ZP_10157390.1| histidine kinase [Vibrio campbellii DS40M4]
Length = 641
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 164/365 (44%), Gaps = 55/365 (15%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A ++AE + K+ LA SH++R + IIG+ L D + + +I + S
Sbjct: 232 QARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLLG-DTKLDEQQKDFVSIINSSSN 290
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
L+ I++ +++ SKIEAGK+EL +NL LL EV ++ +KG+ +V CD
Sbjct: 291 SLMVIIDDILDFSKIEAGKIELEATTYNLLDLLHEVGRLHTVKAQQKGLQLV---CDIDP 347
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
V+GD +LKQ+L NL+SN++KFT GH+ + +
Sbjct: 348 QLPLEVKGDMGRLKQVLSNLLSNAVKFTERGHVKLMVS---------------------- 385
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
V R ++ F V D+G GI K+ Q ++FE+F Q +
Sbjct: 386 ------------------QVSRKTDVASVHFRVVDSGIGIAKEHQQTVFEKFQQADGSTT 427
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDP 681
G GLGL I S+V +M GEI + EPG G F F + L VC++ P
Sbjct: 428 RKYGGTGLGLAICNSLVEVMGGEIRLT-SEPG-LGSYFEFTIPLNIVCDKSI------SP 479
Query: 682 RTHN--DWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIV 739
+T N D+P G+ + K G IL + + + R + L ++V +
Sbjct: 480 QTPNVFDFP-NGMSNAIVAEHIQTTKGVGKPWILVVEDTAVNQKVVRMMLEKLGMQVNVA 538
Query: 740 KQEKN 744
+ K+
Sbjct: 539 EHGKD 543
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 13/125 (10%)
Query: 962 GKKF-LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
GK + LVVED A+ KV +L KLG + V +GK+A ++ + +D
Sbjct: 507 GKPWILVVEDTAVNQKVVRMMLEKLGMQVNVAEHGKDAL-----------RQCQTHQFDL 555
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MDC+MPVM+G+ AT IRK E + +PIIAL+A+ + DAGM+ + KP+
Sbjct: 556 ILMDCQMPVMDGFIATENIRKMGE-WGQQVPIIALSANVIKEDQQSCFDAGMNEFVAKPV 614
Query: 1081 QKDKL 1085
K++L
Sbjct: 615 TKERL 619
>gi|406916797|gb|EKD55728.1| hypothetical protein ACD_59C00054G0001, partial [uncultured
bacterium]
Length = 658
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 135/280 (48%), Gaps = 46/280 (16%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
QA+ ++ K+ LA SH++R L +IG ++ + D + + I++ S LL
Sbjct: 273 QADYANIAKSEFLANISHEIRTPLNGVIGFTDILL-STHLSEDQLDYVKTIKSSSMILLK 331
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N +++ SKIEAGK+EL E EF+L + EV +M + I K ++++ CD +
Sbjct: 332 LINDILDFSKIEAGKLELEEIEFDLELVCYEVCEMISFIVINKPIEII---CDIDDCRAT 388
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
+GD +KLKQIL NL+ NS KFT G I++
Sbjct: 389 FYKGDIIKLKQILINLLGNSSKFTENGEIAL----------------------------- 419
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
A+ S+ + F + DTG GI +DK + IFE F QV +
Sbjct: 420 -----------AVSSIGETGDKANLHFSIKDTGIGINEDKLDIIFETFKQVDGSITRRYG 468
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + +V+ M GEI + + PGE G F F + L
Sbjct: 469 GSGLGLSICKKLVNFMNGEIWV-ESAPGE-GSVFHFTLWL 506
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 70/137 (51%), Gaps = 7/137 (5%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
+++ L KK L+++D+ + + + L G + E +G++A D + + EG
Sbjct: 519 ADEALKNKKALIIDDNQSNIYILTRALKTAGMRAEGILDGEKALDKLES--ASNSSEG-- 574
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075
+D +++D +MP +G++ IR E+ IPI+A + V K +++G +
Sbjct: 575 --FDIVVLDIQMPGTDGYKTALNIRNSEDPAVREIPIVAFSTLFDKNV-KKFIESGFNGF 631
Query: 1076 LTKPLQKDKLLDVVKSI 1092
L KP+++ K +D + +
Sbjct: 632 LPKPIRRQKTIDTIAKV 648
>gi|407684707|ref|YP_006799881.1| sensory box histidine kinase/response regulator [Alteromonas
macleodii str. 'English Channel 673']
gi|407246318|gb|AFT75504.1| sensory box histidine kinase/response regulator [Alteromonas
macleodii str. 'English Channel 673']
Length = 1055
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 156/318 (49%), Gaps = 55/318 (17%)
Query: 347 LMFIAGVI-SLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDV 405
L FI VI SLGL + L + ++ L A T+ ++ + K+ LA+ SH++
Sbjct: 378 LYFIGFVILSLGLVVGLWLRTRQQRKALDAL-------TQDLQKATKAKSDFLARMSHEI 430
Query: 406 RASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVE 465
R L AIIGL +L A D NL I S+ LL I+N +++ SKIEAGK+++
Sbjct: 431 RTPLNAIIGLTKLSQR-AAEDKDQQTNLIQIEGASQTLLSIINDILDFSKIEAGKLDIES 489
Query: 466 EEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNS 525
+FNL L+ + + ++ +K ++++ L ++ GD ++++QIL NLVSN+
Sbjct: 490 TQFNLDALVNQTIRLHLGRAEEKHIELIQHISRDVPL---NLIGDPLRIQQILSNLVSNA 546
Query: 526 MKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNP 585
+KFT +G ISV +C H++E
Sbjct: 547 LKFTEDGLISVSV--------------------RC-----------------THNIED-- 567
Query: 586 NLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEI 645
+Q EFEV DTG G+ ++ +F+ F Q E+ G GLGL I + +V LM GEI
Sbjct: 568 --IQLEFEVKDTGIGLNSTQKALLFQPFNQGDESISRRYGGTGLGLAICKQLVTLMGGEI 625
Query: 646 AIADKEPGERGVCFRFNV 663
+ + + G +G F F V
Sbjct: 626 WV-ESQLG-KGASFHFTV 641
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 71/130 (54%), Gaps = 13/130 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G K L ED+ + KVT +L A EV NG EA + LR++ YD
Sbjct: 801 LRGTKILFAEDNTLNQKVTLGLLNDTHANIEVVSNGFEA-------IKALREDN---SYD 850
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MPVM+G A + IR E + +PIIA+TAHAM K + AGMD H+ KP
Sbjct: 851 VVLMDIQMPVMDGLTAAKKIRDE---LKLTLPIIAMTAHAMQQDIDKSLAAGMDGHINKP 907
Query: 1080 LQKDKLLDVV 1089
+ ++ DV+
Sbjct: 908 VDPNRFFDVL 917
Score = 40.4 bits (93), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 26/169 (15%)
Query: 930 GAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVED-----DAIVLKVTSAVLGK 984
GA +++ + QQ+ + S K L+ K L+ +D DAI+ ++ A
Sbjct: 634 GASFHFTVTVKQDASQQIVSPS------KQLSLLKVLIADDIGVSRDAIIESLSVA---- 683
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
K +V GKEA V K+ + + G + PYD +++D MP ++G E ++++E
Sbjct: 684 -NIKADVATGGKEA---VAKMRAAV---GNSAPYDVLILDWNMPDIDGLEVAAIMKQE-- 734
Query: 1045 QYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
+ + P +I L A + + G+ + KP +L+D ++ +
Sbjct: 735 -FSIKPPKVIMLYAFESPHMREQANQLGIRTFIKKPFSTSELVDKLQEL 782
>gi|218781753|ref|YP_002433071.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
gi|218763137|gb|ACL05603.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
Length = 949
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 137/279 (49%), Gaps = 50/279 (17%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
QA+ +M K+ LA SH++R + ++G++ L E + E +R + LL
Sbjct: 291 QADLANMAKSEFLANMSHEIRTPMNGVVGMISLLLE-TELTREQKEYAETVRNSAHSLLE 349
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLG 503
I+N +++ SKIEAGK++L +F+L LEE D+ +KG++ V +DP
Sbjct: 350 IINDILDFSKIEAGKLDLEAIDFDLRNTLEEASDIVALRAQEKGLEFVCIIDPD-----V 404
Query: 504 SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSK 563
++GD V+L+QI+ NL +N++KFT++G I++R + K++
Sbjct: 405 PFRLKGDPVRLRQIVLNLANNAVKFTAQGSITIRVELLKQA------------------- 445
Query: 564 LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH 623
P+LL +F V DTG G+ +Q S+F+ F Q + + +
Sbjct: 446 ---------------------PDLLALKFSVTDTGIGVAPSRQQSLFDAFTQAEASTTRN 484
Query: 624 QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
G GLGL I + + +MKG I + +E +G F F
Sbjct: 485 YGGTGLGLAISKKLAQMMKGRIGLESEEG--KGSTFWFT 521
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 74/126 (58%), Gaps = 12/126 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LV ED+ + KV ++L KLG + E NG+EA +C E K Y + MD
Sbjct: 695 ILVAEDNPVNQKVALSILKKLGLRAEAVANGREAVKALC--------EKK---YTMVFMD 743
Query: 1025 CEMPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
C+MP M+G+EATR IR D P+IA+TAHAM G K ++AGMD +L+KP++
Sbjct: 744 CQMPDMDGYEATRRIRSRRSCVLDPKTPVIAMTAHAMEGDRKKCIEAGMDDYLSKPVEPG 803
Query: 1084 KLLDVV 1089
L++++
Sbjct: 804 ALIEMI 809
>gi|449119179|ref|ZP_21755578.1| hypothetical protein HMPREF9725_01043 [Treponema denticola H1-T]
gi|449121571|ref|ZP_21757918.1| hypothetical protein HMPREF9727_00678 [Treponema denticola MYR-T]
gi|448950170|gb|EMB30993.1| hypothetical protein HMPREF9727_00678 [Treponema denticola MYR-T]
gi|448951105|gb|EMB31921.1| hypothetical protein HMPREF9725_01043 [Treponema denticola H1-T]
Length = 676
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 142/304 (46%), Gaps = 46/304 (15%)
Query: 363 IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED 422
I K +E FL A + AE+ + ++ LA SH++R + II ++EL +E
Sbjct: 120 ITKQKLKERFLIIA-------RQDAEKANSMRSLFLANVSHEIRTPIQTIIDMMELINE- 171
Query: 423 ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY 482
N + +E + ++ LL ++N V++ SK+E+G M + FNL +E+ VD+
Sbjct: 172 TNLDEEQSEYTRQVNFSAEVLLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLIS 231
Query: 483 HVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKK 542
KKG+++V+D D + GD +L+Q+L N V N++KFT G++SV
Sbjct: 232 MEAHKKGLEIVVDISDKI---PDFIYGDPARLQQVLLNFVKNAVKFTETGYVSVSV---- 284
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
KL F N D A H FEV DTG G+
Sbjct: 285 --------------------KLVFENNSD-DPYAAKH--------FFILFEVADTGIGVN 315
Query: 603 KDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
++++ IF F Q G GLGL I ++++ +MKG+I I D P RG F F
Sbjct: 316 NEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIITMMKGQIGIKDNIP--RGSVFWFK 373
Query: 663 VLLT 666
+ L
Sbjct: 374 IPLV 377
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G K LVV+D + K+ +L K +G+EA D + +D I
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAID-----------TASSEHFDII 606
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD +MP +NG+EAT+++R + PIIA TA + + G++ + KP
Sbjct: 607 FMDIQMPGINGYEATQILRGKGYSR----PIIACTAGSQDNERNLCKSMGLNDIIKKPFN 662
Query: 1082 KDKLLDVVK 1090
K +L ++VK
Sbjct: 663 KKQLFEMVK 671
>gi|440732182|ref|ZP_20912142.1| two-component system sensor protein [Xanthomonas translucens
DAR61454]
gi|440370123|gb|ELQ07068.1| two-component system sensor protein [Xanthomonas translucens
DAR61454]
Length = 1601
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 136/309 (44%), Gaps = 47/309 (15%)
Query: 377 LIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLI 436
L + +A +AER S K LA SH++R L AI+G L DA DL L +I
Sbjct: 871 LAAEQSARGEAERASRMKDEFLATLSHELRTPLNAILGWSRLMQGDAVREKDLVRGLEVI 930
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
+ I++ +++MS I +GK+ L E +L L+ E +D KG+D+VL P
Sbjct: 931 ERSAHAQAQIIDDLLDMSAILSGKVRLDPAELDLCALVGEAIDAARPGAEGKGIDIVLTP 990
Query: 497 C-DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
C D VL GD V+L+Q+L NL+ N++KFT+ G + +R ++ Q ++
Sbjct: 991 CADSPVLPYV---GDAVRLQQVLTNLIGNAIKFTARGSVELRVRRLGETPAQHLL----- 1042
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
EV DTG GI ++Q +F F Q
Sbjct: 1043 -----------------------------------RLEVRDTGIGISAEQQQRLFRSFTQ 1067
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPD 675
+ G GLGL I + +V LM G I + + +RG F F + L V + P
Sbjct: 1068 ADASTTRLYGGTGLGLAICKRIVDLMGGRIGV--ESVSDRGATFWFEIPLLKVIG-DLPQ 1124
Query: 676 TDEEDPRTH 684
PR H
Sbjct: 1125 LQGALPRLH 1133
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 14/156 (8%)
Query: 931 AEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFE 990
A+ ++ + +L S G S P + L+VED+ + L V +L LG + +
Sbjct: 1272 ADGAETVPTAGPTLAPDPDASTGPAS--PAADYRLLLVEDNPVNLLVAQKLLDMLGYRSD 1329
Query: 991 VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYD-VH 1049
+G A H+ +A PYD ++MDC+MPV++G+ ATR R+ E
Sbjct: 1330 SAADGAAALAHL-----------EAQPYDLVLMDCQMPVLDGYAATRQWRQSEAAAGRTR 1378
Query: 1050 IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+PI+A+TA+AMAG + +++GMD +L+KP+ ++ L
Sbjct: 1379 MPIVAMTANAMAGDRQRCLESGMDDYLSKPVNRELL 1414
>gi|428304414|ref|YP_007141239.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
gi|428245949|gb|AFZ11729.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
Length = 1100
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 143/291 (49%), Gaps = 50/291 (17%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVEL---CHEDANPGTDLAENLGLIRTCSKDL 443
AE + K+ LA SH++R L A+IG+ L H D + E IR+ + L
Sbjct: 442 AESATRAKSEFLANMSHEIRTPLNAVIGMTTLLLDTHLDPQQ-QNFTET---IRSSGEAL 497
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV---VLDPCDGS 500
L ++N +++ SKIE+GK++L + FNL +EE +D+ +K +++ + P +
Sbjct: 498 LTLVNDILDFSKIESGKLDLDQYPFNLRACIEESLDLIASKAGEKKLELAYLIYPPTPKT 557
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
++G D +L+QIL N++SN++KFT G + V V +K
Sbjct: 558 IVG------DHNRLRQILVNILSNAVKFTPAGEVVV------------------TVTTKI 593
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
LSKL V+ P + +F + DTG GIP D+ +F+ F QV +
Sbjct: 594 LSKL--------------SEVDNFPQKYEIQFAIKDTGIGIPNDRIEKLFQSFSQVDSST 639
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER 671
H G GLGL I + +V LM G+I + + +RG F F +++ + ++
Sbjct: 640 TRHYGGTGLGLAISKQLVELMDGQIWVESE--VDRGSTFNFTLIVESTQDQ 688
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 18/126 (14%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV ED + K+ +L ++G + ++ NG E +L L ++ PYD ++M
Sbjct: 848 RILVAEDFVVNQKMILLMLERMGYRADIANNGFE-------VLEALHRQ----PYDLVLM 896
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIP---IIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D +MP M+G EATR IR Q P IIA+TA+AM G ++AGMD +L+KP+
Sbjct: 897 DVQMPEMDGLEATRSIR----QNTTSCPQPRIIAITANAMQGDKEACLEAGMDDYLSKPV 952
Query: 1081 QKDKLL 1086
+ ++L+
Sbjct: 953 RVEELV 958
>gi|410663989|ref|YP_006916360.1| PAS domain-containing protein [Simiduia agarivorans SA1 = DSM 21679]
gi|409026346|gb|AFU98630.1| PAS domain-containing protein [Simiduia agarivorans SA1 = DSM 21679]
Length = 1423
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 142/304 (46%), Gaps = 54/304 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A + AE S+ K+ LA SH++R L AIIG+ +L T+ L I S
Sbjct: 770 AIKNAEEASLAKSQFLANISHEIRTPLNAIIGMSQLTL-----NTEQLRYLKTIEYSSHT 824
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LLG++N V++ SKIEAGK+++ FNL LE + M +KGVD +LD D V
Sbjct: 825 LLGVINDVLDFSKIEAGKLQIESIPFNLEASLEAISQMTALRAQEKGVDFLLD-IDIGV- 882
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ GD ++L QIL NL SN+ KFT +GHI++ +K LS
Sbjct: 883 -PSQLVGDPLRLSQILTNLCSNATKFTEQGHITLG--------------------TKLLS 921
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+ + EF V+DTG G+ ++Q +F+ F Q +
Sbjct: 922 E--------------------TEQTVTLEFFVEDTGIGLSAEQQAQLFKAFAQADPSVTR 961
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPR 682
G GLGL I + +V LM EI + E G+ RF+ LT +R+ T +
Sbjct: 962 RYGGTGLGLSICRELVRLMGSEIRVT----SEVGLGSRFSFSLT--LQRDCQSTQKALRS 1015
Query: 683 THND 686
TH++
Sbjct: 1016 THSE 1019
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 69/130 (53%), Gaps = 13/130 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G L+VED+ I ++ + G V NG++A D +G A D
Sbjct: 1161 LRGASLLLVEDNEINQEIAREIFESAGFNVNVASNGQDAVDWFS--------QGHA---D 1209
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MD +MPV++G ATR IR E+ V PIIA+TA+AM + + AGM+ +LTKP
Sbjct: 1210 LILMDVQMPVLDGESATRTIRATEKGQSV--PIIAMTANAMKEDEQRCLAAGMNDYLTKP 1267
Query: 1080 LQKDKLLDVV 1089
+ DK L V
Sbjct: 1268 INIDKALATV 1277
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 950 QSDGKCSEKPLNGK----KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKI 1005
Q D + ++K L L+VED+A + L K+G + C G++A H+
Sbjct: 1003 QRDCQSTQKALRSTHSELSILLVEDNAATADLLMLALKKMGHRVTHCDGGEQALAHLS-- 1060
Query: 1006 LSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIAL-TAHAMAGVA 1064
YD +++D ++P + G LI + + + D + P++ + TA A
Sbjct: 1061 --------NHADYDVLLVDWQLPGIPG---DALISQVKSRSDENTPVVVMITAFEETEAA 1109
Query: 1065 SKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
AG D L KP+ L D + ++
Sbjct: 1110 PVACQAGADALLIKPISASTLFDTLDNL 1137
>gi|428212844|ref|YP_007085988.1| ATPase [Oscillatoria acuminata PCC 6304]
gi|428001225|gb|AFY82068.1| putative ATPase [Oscillatoria acuminata PCC 6304]
Length = 1995
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 139/290 (47%), Gaps = 41/290 (14%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
++ A E A+ + K+ LA SH++R L I+G ++ + D + +I
Sbjct: 1510 ERQRAEEAADTANRAKSQFLASMSHELRTPLNGILGYAQILNRDKTLSQTQKSGVKIIHK 1569
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
C + LL ++N V+++SKIEAGKMEL +EF+L + L+ + D+ KG+ +V +P
Sbjct: 1570 CGEHLLTLINDVLDLSKIEAGKMELQPKEFHLPEFLQSISDICRVRAESKGISLVYEPSS 1629
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
LG C D +L+Q+L NL+ N++KFT +G + +FK + S
Sbjct: 1630 HLPLGVC---ADEKRLRQVLINLLGNAVKFTEKGGV---------TFKVEAFPS------ 1671
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
LD H L+ F V DTG GI ++ +SIF F QV
Sbjct: 1672 --------------PTLDPAHP------LIILRFLVQDTGIGIEPEQISSIFLPFEQVNG 1711
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
T + EG GLGL I +V +M I + + E G +G F F V L V
Sbjct: 1712 T-VRQTEGTGLGLAISSQLVEMMGSSIHL-ESEVG-KGSQFWFEVALPRV 1758
Score = 43.1 bits (100), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K LVV+D V +L LG + + +G++ + V D I+
Sbjct: 1780 RKILVVDDRWENRSVLVNLLTPLGFQVQEAIDGQDCLNQVSSFQPDC-----------II 1828
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D MPVM+G+EA R IRK E +V I +A + ++ G + L KP++
Sbjct: 1829 IDLVMPVMDGFEAMRRIRKIPEVKNV--VAIGTSASIFSDQEKSCLNIGCNDFLLKPIRD 1886
Query: 1083 DKLLDVVKS 1091
++LL +++
Sbjct: 1887 EQLLSCLRN 1895
>gi|291569600|dbj|BAI91872.1| two-component hybrid histidine kinase [Arthrospira platensis
NIES-39]
Length = 897
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 137/292 (46%), Gaps = 53/292 (18%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLV-----ELCHEDANPGTDLAEN 432
I A E AE S K+ LA+ SH++R L AI+G EL H P +D E+
Sbjct: 406 IALQQAKEAAETASRAKSEFLARMSHELRTPLNAILGFTQLMERELYHSPNIPLSDHKEH 465
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
L +I + LL ++N V+EMSKIEAG++ L FNL LL + +M K +
Sbjct: 466 LEIIGRSGEHLLELINDVLEMSKIEAGRVSLNPTNFNLISLLNSLREMLELPASSK--KL 523
Query: 493 VLD-PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIA 551
LD D ++ ++ D KL+Q L NL+ N++KFT +G + +R VK F D
Sbjct: 524 TLDFAIDDNI--PTYIYADEQKLRQCLTNLLGNAIKFTLQGGVILR--VKLGKFNHD--- 576
Query: 552 SNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFE 611
L Q FEV DTG GI + + +FE
Sbjct: 577 -----------------------------------LGQLCFEVQDTGPGIDASEMDLLFE 601
Query: 612 EFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
F Q ET Q+G GLGL I Q + LM GEI ++ E G +G FRF++
Sbjct: 602 PFSQT-ETGRNSQQGTGLGLSITQKFIGLMGGEIQVS-SERG-KGTIFRFDI 650
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D+ K+ +L LG NG+EA K L I M
Sbjct: 680 RILVVDDNWTNRKLVVKLLNPLGFHVREAENGQEAIAIWEKWEPHL-----------IFM 728
Query: 1024 DCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MPVM+G+EAT+LI++ + Q V IIALTA A+ S ++ AG D + KP +
Sbjct: 729 DMRMPVMDGYEATQLIKRHLKGQATV---IIALTASALQQEKSIVLSAGCDDFVRKPFRV 785
Query: 1083 DKLLDVV 1089
D+LL +
Sbjct: 786 DQLLQTI 792
>gi|307151259|ref|YP_003886643.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
gi|306981487|gb|ADN13368.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
Length = 1067
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 147/314 (46%), Gaps = 53/314 (16%)
Query: 361 ILIAKAAKREMFLCAALIKQMNATEQAERK-----------SMNKTFALAKASHDVRASL 409
+ I+K +R L A+++ + +QAE + K+ LA SH++R L
Sbjct: 561 VSISKLVQRGKILFTAIVRDITERKQAEEALKQAKEAADNANRAKSEFLASMSHELRTPL 620
Query: 410 AAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFN 469
AI+G ++ ++ + NL +I + LL ++N ++EMSKIEAG+ + F+
Sbjct: 621 NAILGFTQVLARNSALKEEEKTNLEIISRSGEHLLDLINDILEMSKIEAGRTTFNQSSFD 680
Query: 470 LAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT 529
L +LL+ + DM KG+ ++ D +++ D KL+Q+L NL+ N++KFT
Sbjct: 681 LYRLLDSLEDMLRLRAEAKGLQLIFDSASDV---PQYIQTDEGKLRQVLINLIGNAIKFT 737
Query: 530 SEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQ 589
EG +++R K L S P +
Sbjct: 738 DEGGVTLRVKSGGKV--------------------------------PLES----PKMAT 761
Query: 590 FEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIAD 649
FEV+DTG GI D+ +++FE F Q ET +G GLGL I + V LM GEI ++
Sbjct: 762 ITFEVEDTGPGIALDEIDNLFEAFGQT-ETGRKSNQGTGLGLPISKKFVELMGGEIRVSS 820
Query: 650 KEPGERGVCFRFNV 663
PG G F F++
Sbjct: 821 V-PG-NGSLFAFDI 832
Score = 45.1 bits (105), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I MD MPVM+G+EATR I+ Q V IIALTA A + ++ AG D + KP
Sbjct: 908 IWMDMRMPVMDGYEATRQIKSSIRGQATV---IIALTASAFEEDRAMVLSAGCDDFMRKP 964
Query: 1080 LQKDKLLD 1087
+++ L +
Sbjct: 965 FREEMLWE 972
>gi|257058733|ref|YP_003136621.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
gi|256588899|gb|ACU99785.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
Length = 844
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 142/302 (47%), Gaps = 54/302 (17%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN 432
L + L K NA E A R K+ LA SH++R L AI+G +L + D+ + E
Sbjct: 361 LLSQLQKTKNAAEAANRA---KSQFLAHMSHELRTPLNAILGFSQLLNHDSTLNEEQQEY 417
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
+ +I + LL ++ +++M+KIEAG++ L FNL +L++ + M+Y KG+ +
Sbjct: 418 IDIINRSGEHLLALIQDILDMAKIEAGQITLQRNSFNLHRLIQTLEQMFYLKAQDKGLQL 477
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
++ D S+ ++ D KL+Q+L NL+SN++KFT G I +R + K
Sbjct: 478 FVE-IDPSI--PAYILTDEGKLRQVLINLLSNAIKFTQRGQIILRVSEKPDP-------- 526
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
P LL FEV+D+G GI D+ +F
Sbjct: 527 ------------------------------ETPYLL---FEVEDSGPGIECDEAPKLFNP 553
Query: 613 FVQVKETALGH--QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
F Q T LG QEG GLGL I + V +M G + ++ P G F F++ + C
Sbjct: 554 FFQ---TELGRKTQEGTGLGLAISRHFVSIMGGSLWVSC--PLSGGTLFHFDLPVEFACS 608
Query: 671 RE 672
E
Sbjct: 609 EE 610
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 14/129 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED +V +L +G + + NG+EA + L I M
Sbjct: 631 RLLVVEDHPTNRQVLVNLLEPIGFQVKTADNGQEAVELWETWHPHL-----------IWM 679
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHI---PIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D +P+M+G+EATR I+ + E++ + I IIALTA A A S ++ G D +TKP
Sbjct: 680 DLHLPIMDGYEATRQIKAKMEKFPLDIYPTKIIALTASAFAQERSAMLALGCDDFVTKPF 739
Query: 1081 QKDKLLDVV 1089
+ +LD +
Sbjct: 740 SEGIILDKI 748
>gi|359452292|ref|ZP_09241643.1| hypothetical protein P20495_0382 [Pseudoalteromonas sp. BSi20495]
gi|358050636|dbj|GAA77892.1| hypothetical protein P20495_0382 [Pseudoalteromonas sp. BSi20495]
Length = 1587
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 143/301 (47%), Gaps = 54/301 (17%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN 432
L AL+K AE ++ K+ LA SH++R + ++G++EL E N +
Sbjct: 1057 LSVALVK-------AEDAAVAKSQFLATMSHEIRTPMNGVLGMLELI-ELENLSKPIETK 1108
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
+G+ +T + LLG++N +++ SK EAGK+EL FN L+ EV KG+++
Sbjct: 1109 VGIAKTSAHSLLGVINDILDFSKAEAGKIELESINFNAGDLIGEVAAAQAFTAQDKGIEI 1168
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
+LD L + GD +++QIL NL+SN++KFTS+G + V A + K
Sbjct: 1169 ILDLV---ALEPSQLCGDPGRIRQILTNLLSNAVKFTSKGEVVVSAQIDK---------- 1215
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
VE+ L + +V D+G GI + KQ+ +F
Sbjct: 1216 ----------------------------VEQG---LVLQIKVKDSGIGINEQKQHQLFSP 1244
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
F QV + G GLGL I + + LM GEI++ K +G F + +T ++E
Sbjct: 1245 FSQVDASTTREYGGTGLGLAICKQLCELMGGEISL--KSEAGQGSEFTVTIQVTQSEQKE 1302
Query: 673 R 673
R
Sbjct: 1303 R 1303
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 11/126 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED+ I +V++ +L KL + NG+ A D L G+ + ++M
Sbjct: 1465 QILLVEDNPINQQVSTLMLKKLNCNITLAENGQLAID-------ILNTHGQGY-FKAVLM 1516
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVH--IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
DC+MPVM+G++AT+ IR D H I IIALTA+AM + AGMD +L+KP+Q
Sbjct: 1517 DCQMPVMDGFDATKAIRNGLAG-DKHKDIKIIALTANAMDADKQRCFAAGMDDYLSKPIQ 1575
Query: 1082 KDKLLD 1087
D L D
Sbjct: 1576 LDFLKD 1581
>gi|443476320|ref|ZP_21066232.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
gi|443018713|gb|ELS32917.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
Length = 1179
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/326 (29%), Positives = 161/326 (49%), Gaps = 44/326 (13%)
Query: 354 ISLGLFIILIAKAAKREMFLCAALIKQMNATEQA----ERKSMNKTFALAKASHDVRASL 409
I+L +LI + +RE LIKQ E+A E + +K+ LA SH++R +
Sbjct: 574 IALSQAQLLIQETRQREQ-----LIKQNAELEEARIIAEAANRSKSEFLATMSHEIRTPM 628
Query: 410 AAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFN 469
A+IG+ + D N + E + + R LL I+N +++ SKIE+G +EL E+ F+
Sbjct: 629 NAVIGMTGVLL-DTNLTREQREFVEIARNAGSTLLTIINDILDFSKIESGHLELEEQTFD 687
Query: 470 LAQLLEEVVDMYYHVGIKKGVDV--VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMK 527
L LE+ +++ + ++KG+D+ + P D ++ V GD +L+Q+L NL+ N++K
Sbjct: 688 LRTCLEDTIELLWAKAVEKGIDLGYFIHP-DVDLI----VVGDMTRLRQVLANLIGNAIK 742
Query: 528 FTSEGHISVRAAVKKKSFKQDIIASNRNVISKC-LSKLFFRNKEGFDDLDALHSVERNPN 586
FTS G +++ + + S +C LS L+ E L L
Sbjct: 743 FTSRGSVNISISQMEISH-----------YLRCDLSDLYSDRHEATQLLRTL-------- 783
Query: 587 LLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIA 646
+F V DTG GIP D+ +F+ F QV + G GLGL I + + LM G +
Sbjct: 784 ----QFAVKDTGIGIPSDRLYRLFQPFSQVDASTTRQYGGTGLGLAISKHLCELMGGTMW 839
Query: 647 IADKEPGERGVCFRFNVLLTA-VCER 671
+ + ++G F F + + C+R
Sbjct: 840 V--ESDVQQGSTFYFTITVPVNNCDR 863
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 74/129 (57%), Gaps = 13/129 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ I KV +L ++G + +V NG E D + + PYD I M
Sbjct: 934 RILLAEDNVINQKVAIHILQRMGYRADVAANGLEVIDALLQ-----------QPYDLIFM 982
Query: 1024 DCEMPVMNGWEATRLIRK--EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
D +MPVM+G +AT+ I + ++ ++ I+A+TA+AM G + AGMD +L+KP++
Sbjct: 983 DMQMPVMDGIDATQKIYQNWQDGKFATRPRIVAMTANAMQGDREICLAAGMDDYLSKPIR 1042
Query: 1082 KDKLLDVVK 1090
+L+ V++
Sbjct: 1043 NSELVRVLQ 1051
>gi|218245686|ref|YP_002371057.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
gi|218166164|gb|ACK64901.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
Length = 844
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 142/302 (47%), Gaps = 54/302 (17%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN 432
L + L K NA E A R K+ LA SH++R L AI+G +L + D+ + E
Sbjct: 361 LLSQLQKTKNAAEAANRA---KSQFLAHMSHELRTPLNAILGFSQLLNHDSTLNEEQQEY 417
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
+ +I + LL ++ +++M+KIEAG++ L FNL +L++ + M+Y KG+ +
Sbjct: 418 IDIINRSGEHLLALIQDILDMAKIEAGQITLQRNSFNLHRLIQTLEQMFYLKAQDKGLQL 477
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
++ D S+ ++ D KL+Q+L NL+SN++KFT G I +R + K
Sbjct: 478 FVE-IDPSI--PAYILTDEGKLRQVLINLLSNAIKFTQRGQIILRVSEKPDP-------- 526
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
P LL FEV+D+G GI D+ +F
Sbjct: 527 ------------------------------ETPYLL---FEVEDSGPGIECDEAPKLFNP 553
Query: 613 FVQVKETALGH--QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
F Q T LG QEG GLGL I + V +M G + ++ P G F F++ + C
Sbjct: 554 FFQ---TELGRKTQEGTGLGLAISRHFVSIMGGSLWVSC--PLSGGTLFHFDLPVEFACS 608
Query: 671 RE 672
E
Sbjct: 609 EE 610
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 14/129 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED +V +L +G + + NG+EA + L I M
Sbjct: 631 RLLVVEDHPTNRQVLVNLLEPIGFQVKTADNGQEAVELWETWHPHL-----------IWM 679
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHI---PIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D +P+M+G+EATR I+ + E++ + I IIALTA A A S ++ G D +TKP
Sbjct: 680 DLHLPIMDGYEATRQIKAKMEKFPLDIYPTKIIALTASAFAQERSAMLALGCDDFVTKPF 739
Query: 1081 QKDKLLDVV 1089
+ +LD +
Sbjct: 740 SEGIILDKI 748
>gi|118790708|tpd|FAA00251.1| TPA: histidine kinase [Oryza sativa Japonica Group]
Length = 970
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 110/426 (25%), Positives = 190/426 (44%), Gaps = 75/426 (17%)
Query: 356 LGLFIILIAKAAKREMFLCAALIKQMNATE----------QAERKSMNKTFALAKASHDV 405
LG F+I + +CAA + +E QAE + K+ LA SH++
Sbjct: 312 LGTFVIWMLVG----YIICAAWSRYDKVSEDCRKMEELKTQAEAADVAKSQFLATVSHEI 367
Query: 406 RASLAAIIGLVELCHEDANPGTDLA----ENLGLIRTCSKDLLGILNSVMEMSKIEAGKM 461
R + ++G++++ GTDL+ + + C + L+ ++N V++ +KIEAGK+
Sbjct: 368 RTPMNGVLGMLDMLL-----GTDLSMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKL 422
Query: 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNL 521
EL F+L L+++V+ ++ +K +++ + CD V GD + +QIL NL
Sbjct: 423 ELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDV---PKVVIGDPWRYRQILTNL 479
Query: 522 VSNSMKFTSEGHISVRAAVKKKS-------------FKQDIIASNRNVISKCLS------ 562
V N++KFT GH+ VR + + S K + + N LS
Sbjct: 480 VGNAVKFTERGHVFVRVCLAENSKVEANQVLNGTMNGKDGKVETTANGAFNTLSGFQAAD 539
Query: 563 --------KLFFRNKEG-FDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
KL +KE D+L+ S + + + + ++DTG GIP Q+ +F F
Sbjct: 540 ERNNWDYFKLLLSDKEPHMDELECDRSYQNDCDCVTLMISIEDTGVGIPLHAQDRVFTPF 599
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
+Q + + G G+GL I + + LM G+I+ + G F F+ +L C+
Sbjct: 600 MQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSRP--FVGSTFTFSAVLKRSCK--- 654
Query: 674 PDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLN 733
DT + R+ ++ T +F G A + + G R + RY N L
Sbjct: 655 -DTSSDSKRSLSEALPT-------AFKGMKA--------ILVDGRPVRGAVTRYHLNRLG 698
Query: 734 IKVTIV 739
I V +V
Sbjct: 699 IVVKVV 704
Score = 73.2 bits (178), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 26/149 (17%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK L+V+D+ + L+V +A L K GAK +GK+A +S L++ +D
Sbjct: 823 LIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDA-------VSLLQQPH---CFD 872
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQ----------------YDVHIPIIALTAHAMAGV 1063
MD +MP M+G+EATR IR+ E + + H+P++A+TA +
Sbjct: 873 ACFMDVQMPEMDGFEATRQIRQMEVKANEERKALDLMEGSTFVESHLPVLAMTADVIQAT 932
Query: 1064 ASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
+ + +GMD +++KP +++L V +
Sbjct: 933 YEECIKSGMDGYVSKPFDEEQLYQAVSRL 961
>gi|414069249|ref|ZP_11405244.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas sp. Bsw20308]
gi|410808364|gb|EKS14335.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas sp. Bsw20308]
Length = 1587
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 143/301 (47%), Gaps = 54/301 (17%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN 432
L AL+K AE ++ K+ LA SH++R + ++G++EL E N +
Sbjct: 1057 LSVALVK-------AEDAAVAKSQFLATMSHEIRTPMNGVLGMLELI-ELENLSKPIETK 1108
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
+G+ +T + LLG++N +++ SK EAGK+EL FN L+ EV KG+++
Sbjct: 1109 VGIAKTSAHSLLGVINDILDFSKAEAGKIELESINFNAGDLIGEVAAAQAFTAQDKGIEI 1168
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
+LD L + GD +++QIL NL+SN++KFTS+G + V A + K
Sbjct: 1169 ILDLV---ALEPSQLCGDPGRIRQILTNLLSNAVKFTSKGEVVVSAQIDK---------- 1215
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
VE+ L + +V D+G GI + KQ+ +F
Sbjct: 1216 ----------------------------VEQG---LVLQIKVKDSGIGINEQKQHQLFSP 1244
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
F QV + G GLGL I + + LM GEI++ K +G F + +T ++E
Sbjct: 1245 FSQVDASTTREYGGTGLGLAICKQLCELMGGEISL--KSEAGQGSEFTVTIQVTQSEQKE 1302
Query: 673 R 673
R
Sbjct: 1303 R 1303
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 11/126 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED+ I +V++ +L KL + NG+ A D L G+ + ++M
Sbjct: 1465 QILLVEDNPINQQVSTLMLKKLNCNITLAENGQLAID-------ILNTHGQGY-FKAVLM 1516
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVH--IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
DC+MPVM+G++AT+ IR D H I IIALTA+AM + AGMD +L+KP+Q
Sbjct: 1517 DCQMPVMDGFDATKAIRNGLAG-DKHKDIKIIALTANAMDADKQRCFAAGMDDYLSKPIQ 1575
Query: 1082 KDKLLD 1087
D L D
Sbjct: 1576 LDFLKD 1581
>gi|422341206|ref|ZP_16422147.1| sensor protein [Treponema denticola F0402]
gi|325474777|gb|EGC77963.1| sensor protein [Treponema denticola F0402]
Length = 676
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 142/304 (46%), Gaps = 46/304 (15%)
Query: 363 IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED 422
I K +E FL A + AE+ + ++ LA SH++R + IIG++EL +E
Sbjct: 120 ITKQKLKERFLIIA-------RQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELINE- 171
Query: 423 ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY 482
N + +E + ++ LL ++N V++ SK+E+G M + FNL +E+ VD+
Sbjct: 172 TNLDEEQSEYTRQVNFSAEVLLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLIS 231
Query: 483 HVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKK 542
KKG+++V+D D + GD +L+Q+L N V N++KFT G++SV
Sbjct: 232 MEAHKKGLEIVVDISDKI---PDFIYGDPARLQQVLLNFVKNAVKFTETGYVSVSV---- 284
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
KL F N D A H FEV DTG G+
Sbjct: 285 --------------------KLVFENNSD-DPYAAKH--------FFILFEVADTGIGVN 315
Query: 603 KDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
++++ IF F Q G GLGL I ++++ +MKG+I I D RG F F
Sbjct: 316 NEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIITMMKGQIGIKDN--ISRGSVFWFK 373
Query: 663 VLLT 666
+ L
Sbjct: 374 IPLV 377
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G K LVV+D + K+ +L K +G+EA D + +D I
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAID-----------TASSEHFDII 606
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD +MP +NG+EAT+++R + PIIA TA + + G++ + KP
Sbjct: 607 FMDIQMPGINGYEATQILRGKGYSR----PIIACTAGSQDNERNLCKSMGLNDIIKKPFN 662
Query: 1082 KDKLLDVVK 1090
K +L ++VK
Sbjct: 663 KKQLFEMVK 671
>gi|299771551|ref|YP_003733577.1| Sensor protein gacS [Acinetobacter oleivorans DR1]
gi|298701639|gb|ADI92204.1| Sensor protein gacS [Acinetobacter oleivorans DR1]
Length = 935
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 150/356 (42%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + L IR
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLNNEQNLYLQTIR 333
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL F+L + + +V+DM + +K + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD ++ KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 394 DNI---PQEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 438
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 439 GQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 470
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +VHLM G+I D + P E+G F F
Sbjct: 471 ASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFVI------- 523
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
D D E H HF E Q++ ++A VL+ Y+EN
Sbjct: 524 DEDYEIE-----------HPHF----------EHLQVVSYLAHPATASVLRYYLEN 558
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 12/179 (6%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDA 972
Q +PN LN+ + A S +Q + Q + ++ NG+ L V+D
Sbjct: 616 QMTLEPNMLNE---YRARPLYQPLSRSGLIQLLNDQPIFEEEQQDFNGQGLHILAVDDHL 672
Query: 973 IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG 1032
L V A+LG+L K +G+EA + + + R + K P+D + MD +MPVM+G
Sbjct: 673 PNLIVLEALLGELNVKTTKALSGQEALNLIQE-----RIDQKLKPFDLVFMDIQMPVMSG 727
Query: 1033 WEATRLIRKEEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ TR IR E D + +PIIALTAHA+A K++ GM+ ++TKP+Q ++++ ++
Sbjct: 728 IDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQIL 786
>gi|297819676|ref|XP_002877721.1| hypothetical protein ARALYDRAFT_906322 [Arabidopsis lyrata subsp.
lyrata]
gi|297323559|gb|EFH53980.1| hypothetical protein ARALYDRAFT_906322 [Arabidopsis lyrata subsp.
lyrata]
Length = 148
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 79/107 (73%)
Query: 359 FIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVEL 418
F+ + +A +REM + A LI QM AT+QAERKSMNK+ A A ASHD R +LA I GL+++
Sbjct: 37 FVWFMMQATRREMHMRAMLINQMEATQQAERKSMNKSQAFANASHDNRGALAGIKGLIDI 96
Query: 419 CHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVE 465
C ++ PG+D+ L + CSKDL+ +LNSV++MSKIE+GKM LV+
Sbjct: 97 CRDEVKPGSDVDTTLRQVNVCSKDLVVLLNSVLDMSKIESGKMHLVK 143
>gi|116620185|ref|YP_822341.1| integral membrane sensor hybrid histidine kinase [Candidatus
Solibacter usitatus Ellin6076]
gi|116223347|gb|ABJ82056.1| integral membrane sensor hybrid histidine kinase [Candidatus
Solibacter usitatus Ellin6076]
Length = 630
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 132/265 (49%), Gaps = 48/265 (18%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E+AE + KT LA SH++R + ++G++ L + D E+L + ++ +
Sbjct: 246 LAAKERAEDAARQKTQFLANMSHEIRTPMNGVMGMISLVLDHELDSQD-REHLLMAQSAA 304
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ L+ ILN ++++SKIEAGKM +F+L +L+ + + ++ I KG+D+ +D S
Sbjct: 305 QSLIIILNDILDLSKIEAGKMTFETVDFDLHRLIGDAMGIFSSAAIAKGLDLGIDLAPDS 364
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
VRGD V+L+QIL NLV N++KFT+ G SVR +
Sbjct: 365 ---PRWVRGDPVRLRQILINLVGNAVKFTAAG--SVRLTLAPH----------------- 402
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
D+L F V DTG G+PKD+ +IFE FVQ +
Sbjct: 403 -----------LDNL--------------VRFAVRDTGIGVPKDQMEAIFEAFVQADGSH 437
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEI 645
G GLGL I + +V LM+G +
Sbjct: 438 TRQFGGTGLGLAITRRLVALMEGTL 462
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 13/152 (8%)
Query: 942 SSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDH 1001
S++Q + A ++ E P + LV ED+ I KV ++L + G + NG+EA+
Sbjct: 484 SAVQSLVAMAESAPGELP-PVLRVLVAEDNVINQKVICSMLRRQGWTVTLALNGEEAYRR 542
Query: 1002 VCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAM 1060
E + +D I+MD +MP ++G E++R IR+ E + + IPI+ALTAHA
Sbjct: 543 FL--------ESR---FDLILMDVQMPEVDGLESSRRIRQAERNHKLGRIPILALTAHAA 591
Query: 1061 AGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
+ + AGMD +TKP+ +L + ++
Sbjct: 592 TAQHKQCLAAGMDAVITKPVNFPAMLAQIAAV 623
>gi|171059271|ref|YP_001791620.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170776716|gb|ACB34855.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 1959
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 134/289 (46%), Gaps = 51/289 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++AE + K+ LA SH++R + AIIGL L D+ T E LG + +
Sbjct: 1220 ARDRAEAANRAKSVFLANMSHEIRTPMNAIIGLTHLLLRDST-DTVQQERLGQVTGAAHH 1278
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N ++++SKIE+GK+EL + +F + LL + KG+++VLD S
Sbjct: 1279 LLDVINDILDLSKIESGKLELEQTDFPVDTLLSRACALVGERARAKGLELVLD----SHR 1334
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+RGD +L Q L NL+SN++KFT +G + VRA +
Sbjct: 1335 LPTSLRGDPTRLSQALVNLLSNAVKFTEQGSVVVRAEI---------------------- 1372
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
V +P+ L FEVDDTG G+ ++ +F F Q +
Sbjct: 1373 ------------------VHEDPDGLTVRFEVDDTGIGMAPEQIGRLFAAFEQADSSTTR 1414
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER 671
G GLGL I + + LM GE+ ++ GV RF TA +R
Sbjct: 1415 RFGGTGLGLVITRHLAELMGGEVGVSSAP----GVGSRF--WFTARLQR 1457
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 13/119 (10%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G + L+ ED+A+ +V +L G + ++ +G+EA D +C+ + Y +
Sbjct: 1625 GARVLLAEDNAVNREVAVELLQAAGMQVDLAVDGQEAID-MCQRTA----------YALV 1673
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+MD +MP ++G EATR IR + D +PI+A+TA+A + + AGM+ H+ KP+
Sbjct: 1674 LMDMQMPQVDGLEATRRIRADARLAD--LPILAMTANAFGEDRAACLAAGMNDHIAKPV 1730
>gi|428770324|ref|YP_007162114.1| histidine kinase [Cyanobacterium aponinum PCC 10605]
gi|428684603|gb|AFZ54070.1| histidine kinase [Cyanobacterium aponinum PCC 10605]
Length = 662
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 142/287 (49%), Gaps = 42/287 (14%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A ++AE ++ K+ LA SH++R + I+G+V L ED E L IR
Sbjct: 272 IKAKQEAETANLAKSQFLAMISHEIRTPMNGILGMVNLL-EDTPLNNIQKEFLLTIRDGG 330
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL I+N ++ SKIE+ K+EL + F+L Q +++V+D+ +K + + + D S
Sbjct: 331 ESLLTIINDILNFSKIESNKLELETKNFSLRQCVKKVIDLLQFQAQEKNLSLTFE-IDDS 389
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ + GD ++L+QIL NLV+N++KFT +G + + KK + + + A
Sbjct: 390 L--PDYFLGDIIRLRQILLNLVANAIKFTRQGEVKIIVQGKKINPNEKLSA--------- 438
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
Q F V DTG GIP KQ+ +F+ F Q+ +
Sbjct: 439 ---------------------------YQILFIVQDTGIGIPLHKQSKLFQPFSQLDASI 471
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
G GLGL I + +V +M+GEI + +E +G F F V+L+
Sbjct: 472 NRKYGGTGLGLAICKGLVEMMEGEIWLESEE--NKGSSFYFRVVLSV 516
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 20/121 (16%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+VED+ + KV S L KLG ++ +G +A +IL +K+ Y+ I+M
Sbjct: 540 KILIVEDNLVNQKVISLTLKKLGYHADIANHGVDA----IQILQ--QKD-----YNLILM 588
Query: 1024 DCEMPVMNGWEATRLIRK----EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
D +MP M+G T+ IR+ E++ Y I+A+TA+AM ++AGMD +++KP
Sbjct: 589 DMQMPEMDGIATTKWIRQNLLPEKQPY-----IMAMTANAMDSDRILCLNAGMDDYMSKP 643
Query: 1080 L 1080
+
Sbjct: 644 I 644
>gi|407688629|ref|YP_006803802.1| sensory box histidine kinase/response regulator [Alteromonas
macleodii str. 'Balearic Sea AD45']
gi|407292009|gb|AFT96321.1| sensory box histidine kinase/response regulator [Alteromonas
macleodii str. 'Balearic Sea AD45']
Length = 844
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 156/318 (49%), Gaps = 55/318 (17%)
Query: 347 LMFIAGVI-SLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDV 405
L FI VI SLGL + L + ++ L A T+ ++ + K+ LA+ SH++
Sbjct: 170 LYFIGFVILSLGLVVGLWLRTRQQRKALDAL-------TQDLQKATKAKSDFLARMSHEI 222
Query: 406 RASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVE 465
R L AIIGL +L A D NL I S+ LL I+N +++ SKIEAGK+++
Sbjct: 223 RTPLNAIIGLTKLSQR-AAEDKDQQTNLIQIEGASQTLLSIINDILDFSKIEAGKLDIES 281
Query: 466 EEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNS 525
+FNL L+ + + ++ +K ++++ L ++ GD ++++Q+L NLVSN+
Sbjct: 282 TQFNLDALVNQTIRLHLGRAEEKHIELIQHISRDVPL---NLIGDPLRIQQVLSNLVSNA 338
Query: 526 MKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNP 585
+KFT +G ISV +C H+VE
Sbjct: 339 LKFTEDGLISVSV--------------------RC-----------------THNVED-- 359
Query: 586 NLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEI 645
+Q EFEV DTG G+ ++ +F+ F Q E+ G GLGL I + +V LM GEI
Sbjct: 360 --IQLEFEVKDTGIGLNSTQKALLFQPFNQGDESISRRYGGTGLGLAICKQLVTLMGGEI 417
Query: 646 AIADKEPGERGVCFRFNV 663
+ + + G +G F F V
Sbjct: 418 WV-ESQLG-KGASFHFTV 433
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 71/130 (54%), Gaps = 13/130 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G K L ED+ + KVT +L A EV NG EA + LR++ YD
Sbjct: 593 LRGTKILFAEDNTLNQKVTLGLLNDTHANIEVVSNGFEA-------IKALREDN---SYD 642
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MPVM+G A + IR E + +PIIA+TAHAM K + AGMD H+ KP
Sbjct: 643 VVLMDIQMPVMDGLTAAKKIRDE---LKLTLPIIAMTAHAMQQDIDKSLAAGMDGHINKP 699
Query: 1080 LQKDKLLDVV 1089
+ ++ DV+
Sbjct: 700 VDPNRFFDVL 709
Score = 40.4 bits (93), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 26/169 (15%)
Query: 930 GAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVED-----DAIVLKVTSAVLGK 984
GA +++ + QQ+ + S K L+ K L+ +D DAI+ ++ A
Sbjct: 426 GASFHFTVTVKQDASQQIVSPS------KQLSLLKVLIADDIGVSRDAIIESLSVA---- 475
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
K +V GKEA V K+ + + G + PYD +++D MP ++G E ++++E
Sbjct: 476 -NIKADVATGGKEA---VAKMRAAV---GNSAPYDVLILDWNMPDIDGLEVAAIMKQE-- 526
Query: 1045 QYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
+ + P +I L A + + G+ + KP +L+D ++ +
Sbjct: 527 -FSIKPPKVIMLYAFESPHMREQANQLGIRTFIKKPFSTSELVDKLQEL 574
>gi|383935940|ref|ZP_09989372.1| two-component system, unclassified family, sensor histidine kinase
and response regulator [Rheinheimera nanhaiensis E407-8]
gi|383703022|dbj|GAB59463.1| two-component system, unclassified family, sensor histidine kinase
and response regulator [Rheinheimera nanhaiensis E407-8]
Length = 1186
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 146/324 (45%), Gaps = 49/324 (15%)
Query: 361 ILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCH 420
+L A+ +R L + + +A + AE + K+ LA SH++R L A++G EL
Sbjct: 779 LLTAQVQQRTAHLQHTMQQLQHAKQAAESATAAKSEFLANMSHELRTPLNAVLGFAELAQ 838
Query: 421 EDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDM 480
+N L IR K LL ++N +++ SKIEAGK+ L F+ ++L +V DM
Sbjct: 839 R-SNDYASQQSYLAKIRAAGKILLSVINDILDFSKIEAGKLVLDVAPFSPQEMLTQVTDM 897
Query: 481 YYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAV 540
+ +KG+ L DG + + GD ++L Q+L NL+ N++KFT +G + +R
Sbjct: 898 FSAQLEQKGLAFTLQ-VDGEL--PAQLTGDALRLSQVLINLLGNAVKFTEKGRVGLR--- 951
Query: 541 KKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKG 600
+ A +RN + C Q F + DTG G
Sbjct: 952 --------LQAQSRNGV--C----------------------------QLSFAISDTGIG 973
Query: 601 IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
I +Q +F F Q + G GLGL I Q ++ LM E+++ +PG G F
Sbjct: 974 ISAAQQQQLFVAFSQADSSISRKYGGTGLGLAICQRLLQLMHSELSV-QSQPGV-GTVFS 1031
Query: 661 FNVLLTAVCERERPDTDEEDPRTH 684
F++ L P DE P +
Sbjct: 1032 FSLQLPLAT--PAPHQDEVKPSPY 1053
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+VED+ + +L KLG + + ++A D + P +++D
Sbjct: 1069 LLVEDNYFNQTLAVILLKKLGYQVLTADSAEQALDLLA-----------TQPVALVLLDI 1117
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
E+P M+G+ R IR++ +P+IA+TAH V + DAG++ +TKP+ L
Sbjct: 1118 ELPGMDGYACCRAIRQQSAL--ATLPVIAMTAHQTDTVRQQCEDAGINDLVTKPIDTQLL 1175
Query: 1086 LD 1087
D
Sbjct: 1176 AD 1177
>gi|383790917|ref|YP_005475491.1| PAS domain-containing protein [Spirochaeta africana DSM 8902]
gi|383107451|gb|AFG37784.1| PAS domain S-box [Spirochaeta africana DSM 8902]
Length = 792
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 140/290 (48%), Gaps = 46/290 (15%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
E A R + K+ LA SH++R + I+G+ EL D + + E G I+ + LL
Sbjct: 132 EDALRATKTKSAFLANVSHEIRTPIHTIMGMSELLL-DTSLDVEQREYAGQIQFSADVLL 190
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGS 504
++N V+++SKIEAGK+ L EF+L +LE+ DM KKG+++++D D +
Sbjct: 191 SLVNDVLDLSKIEAGKLSLEIIEFDLYTVLEDAADMISLEAHKKGLELIID-IDSRI--P 247
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
V GD ++L+QI+ N +SN++KFTS G I +RA ++D++
Sbjct: 248 IVVSGDPLRLRQIVVNFLSNALKFTSSGMIVLRARPAGAGERRDVV-------------- 293
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
EV+DTG GIP+ + +F+ F Q+ +
Sbjct: 294 --------------------------RIEVEDTGIGIPEKQLPHLFQAFRQIDSSTTRKF 327
Query: 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
G GLGL I +S+V +MKG I + + G+ G F V V + P
Sbjct: 328 GGTGLGLSISKSLVRMMKGRIGVRSRS-GD-GSVFWIEVPFAGVVAGDSP 375
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 18/134 (13%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+ ED + ++ +L G + NG++A + + + + MD
Sbjct: 543 LLAEDHEVNQELFRTILEHCGLQVVTASNGRDAVEMF-----------RPRQFAMVFMDV 591
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MPVMNG+ A R IR D +PI+ +TA+A+ G K AGM+ +L KP K
Sbjct: 592 QMPVMNGYNAARRIRAA----DPDVPIVGVTANALQGEREKCRQAGMNDYLPKPF---KS 644
Query: 1086 LDVVKSIDETMEKQ 1099
DV + M +Q
Sbjct: 645 RDVYPLLRRYMAEQ 658
>gi|326487932|dbj|BAJ89805.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1019
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 113/420 (26%), Positives = 196/420 (46%), Gaps = 78/420 (18%)
Query: 313 QIAGVQSVYVLAYD------------SNGLGSLVSRNNKLS--------------LMLLV 346
Q+AG QS+ V YD SN G + N+ L+ +
Sbjct: 321 QLAGKQSIMVNVYDTTTKEKPISMYGSNDTGGGMYHNSTLNSGDPSRRHEMHCRFMQKPP 380
Query: 347 LMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATE-----------QAERKSMNKT 395
L ++A SLG+++I + ++ A + ++ E +AE + K+
Sbjct: 381 LPWLAITSSLGIYVIFLLIG-----YIIYATVHRIAKVEDDLQIMKDLKKRAEAADVAKS 435
Query: 396 FALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSK 455
LA SH++R + ++G++++ D + T + + + K L+ ++N V++ +K
Sbjct: 436 QFLATVSHEIRTPMNGVLGMLQMLM-DTDLDTTQQDYVRTAQASGKALVSLINEVLDQAK 494
Query: 456 IEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV---VLDPCDGSVLGSCHVRGDRV 512
IE+GK+EL ++ + ++++ ++ +KG+++ V D +++G D
Sbjct: 495 IESGKLELDAVPLDVRLVCDDILSLFCGKAQEKGLELAVYVSDQVPQTLIG------DPN 548
Query: 513 KLKQILCNLVSNSMKFTSEGHISVRAAVKKKSF-KQDI---IASNRNVISKC------LS 562
+++QI+ NL+ NS+KFT GHI + V ++ D+ I + N +S C LS
Sbjct: 549 RMRQIITNLMGNSIKFTERGHIYLTVHVVEEVMCSLDVETEIQNTYNTLSGCEVAKRRLS 608
Query: 563 KLFFRNKEGFDDLDALHSVERN-----PNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
FR ++D LHS E P ++ V+DTG GIP + Q+ IF F+QV
Sbjct: 609 WQSFR----LFNMD-LHSSELPFAPIMPETIRLIISVEDTGVGIPLEAQSRIFTPFMQVG 663
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTD 677
+ G G+GL I + +VHLMKGEI K G F F TAV R RP+ +
Sbjct: 664 PSIARTHGGTGIGLSISKCLVHLMKGEIGFVSKH--HVGSTFSF----TAVLSRARPNAN 717
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 27/143 (18%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L+ +K +VV+D+A+ LKV + L K GA+ +GK+A L K + +D
Sbjct: 872 LHKRKIIVVDDNAVNLKVAAGALKKYGAEVICADSGKKAI--------ALLKPPHS--FD 921
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHI-----------------PIIALTAHAMAG 1062
MD +MP M+G+EAT+ IR E + + + PI+A+TA +
Sbjct: 922 ACFMDIQMPEMDGFEATKRIRMMERELNERVERGEAPPECANVRRWRTPILAMTADVIQA 981
Query: 1063 VASKIVDAGMDFHLTKPLQKDKL 1085
+ MD +++KP + ++L
Sbjct: 982 TYEHCLKCEMDGYVSKPFEGEQL 1004
>gi|163756235|ref|ZP_02163350.1| sensory box histidine kinase/response regulator [Kordia algicida
OT-1]
gi|161323847|gb|EDP95181.1| sensory box histidine kinase/response regulator [Kordia algicida
OT-1]
Length = 782
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 137/278 (49%), Gaps = 47/278 (16%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA-ENLGLIRTCSKDLLG 445
AE+ + KT L+ SH++R L I+GL EL + GT+ EN+ IR +++LL
Sbjct: 404 AEKSAKAKTTFLSNMSHEIRTPLNVILGLSELFNRKDFTGTEKEYENIEAIRFSTENLLM 463
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
I+N +++ SKIEAGK+ + + +FN +L+ + + +KG+D ++ +
Sbjct: 464 IVNDILDFSKIEAGKLNVQKVDFNFTELISNLNKGFRLKAEEKGLDFSINITNSI---PK 520
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
++ GD+ +L QIL NL+ N++KFT +G I+V N+ +K L
Sbjct: 521 YIVGDQYRLSQILNNLIGNAIKFTKKGFINV------------------NITAKVLE--- 559
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
LQ F ++D+G GIPK+ NSIFE F Q + +
Sbjct: 560 -------------------DKTLQLYFTIEDSGYGIPKENLNSIFESFYQTYHSE-QKPK 599
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V L+ G + + K G F F++
Sbjct: 600 GTGLGLSITKELVSLLGGNLTV--KSEVNVGTTFDFDL 635
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 19/137 (13%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L KK LV ED+ + +L K A+ + NG+EA + V K+ +D
Sbjct: 657 LRNKKILVAEDNKLNQLFIKQLLKKWDAETTIVENGQEAVEIV-----------KSQDFD 705
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MD +MPV++G EAT IR E++ IPI+A +A K +AG+++++TKP
Sbjct: 706 LILMDIQMPVLDGLEATIAIRALEKE-KKKIPIVACSADVFPESRQKAEEAGVNYYITKP 764
Query: 1080 LQKDKLLDVVKSIDETM 1096
+ KSI+E +
Sbjct: 765 IS-------AKSINEIL 774
>gi|411120735|ref|ZP_11393107.1| signal transduction histidine kinase [Oscillatoriales
cyanobacterium JSC-12]
gi|410709404|gb|EKQ66919.1| signal transduction histidine kinase [Oscillatoriales
cyanobacterium JSC-12]
Length = 1060
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 139/287 (48%), Gaps = 36/287 (12%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A + AE + K+ LA SH++R L AI+G ++ D L +I +
Sbjct: 533 QAKDAAEVANRAKSEFLANMSHELRTPLNAILGFTQIMSHDPFLSEQNQNYLNIINRSGQ 592
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N V+E+SKIEAG++ L F+L LE + M I K + +V +
Sbjct: 593 HLLELINDVLELSKIEAGRIRLNSTSFDLHYFLESLEQMLRVKAIDKQLTLVFERATDL- 651
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
++ D KL+Q+L NL+ N++KFTS+G +++R KQ+I N + +S+ L
Sbjct: 652 --PQYITTDEGKLRQVLINLLGNAIKFTSQGSVTMRVQ------KQEI--ENSSQVSQNL 701
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLL----QFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+R+P L + FE++DTG GI + +F+ FVQ K
Sbjct: 702 CS------------------DRSPEYLNKSFRLYFEIEDTGPGIASEDLQQLFQAFVQTK 743
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
T EG GLGL I V LM G+I + + +G FRF++L
Sbjct: 744 -TGQQANEGTGLGLKISSRFVQLMGGDITV--QSIVGKGSIFRFDIL 787
>gi|110288960|gb|AAP53311.2| histidine kinase 3, putative, expressed [Oryza sativa Japonica
Group]
Length = 1186
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 156/315 (49%), Gaps = 46/315 (14%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
+AE + K+ LA SH++R + ++G++++ D T + + + K L+
Sbjct: 589 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM-DTELDTTQRDFVVTAQESGKSLIN 647
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N V++++KIE+GK+EL F++ +L+ VV ++ KG+++ +VL S
Sbjct: 648 LINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIEL-------AVLVSD 700
Query: 506 HVR----GDRVKLKQILCNLVSNSMKFTSEGHISVRA----AVKKKSFKQD--------I 549
V GD + +QI+ NLV NSMKFT +GHI +R VK+K D +
Sbjct: 701 QVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEV 760
Query: 550 IASNRNVIS-KCLSKLFFRNK----EGF----DDLDALHSVERNPNLLQFEFEVDDTGKG 600
A+++N + LS L N E F D DA+ SV NLL V+DTG G
Sbjct: 761 TANSKNTMPYNTLSGLEVANNRKTLESFRMFKDSSDAIDSV----NLL---VTVEDTGIG 813
Query: 601 IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
I KD Q IF F+Q + G G+GL I + +V LM GEI K GV
Sbjct: 814 ITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKP----GVSST 869
Query: 661 FNVLLTAVCERERPD 675
F+ TA+ + R D
Sbjct: 870 FS--FTAIFKENRKD 882
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK LVV+D+A+ V + L K GA +GKEA +S L+ K +D
Sbjct: 1053 LTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEA-------ISRLQPPHK---FD 1102
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD 1047
MD +MP M+G+EATRL+R E + +
Sbjct: 1103 ACFMDVQMPEMDGFEATRLVRSVESKIN 1130
>gi|218191539|gb|EEC73966.1| hypothetical protein OsI_08865 [Oryza sativa Indica Group]
Length = 985
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 110/426 (25%), Positives = 190/426 (44%), Gaps = 75/426 (17%)
Query: 356 LGLFIILIAKAAKREMFLCAALIKQMNATE----------QAERKSMNKTFALAKASHDV 405
LG F+I + +CAA + +E QAE + K+ LA SH++
Sbjct: 327 LGTFVIWMLVG----YIICAAWSRYDKVSEDCRKMEELKTQAEAADVAKSQFLATVSHEI 382
Query: 406 RASLAAIIGLVELCHEDANPGTDLA----ENLGLIRTCSKDLLGILNSVMEMSKIEAGKM 461
R + ++G++++ GTDL+ + + C + L+ ++N V++ +KIEAGK+
Sbjct: 383 RTPMNGVLGMLDMLL-----GTDLSMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKL 437
Query: 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNL 521
EL F+L L+++V+ ++ +K +++ + CD V GD + +QIL NL
Sbjct: 438 ELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDV---PKVVIGDPWRYRQILTNL 494
Query: 522 VSNSMKFTSEGHISVRAAVKKKS-------------FKQDIIASNRNVISKCLS------ 562
V N++KFT GH+ VR + + S K + + N LS
Sbjct: 495 VGNAVKFTERGHVFVRVCLAENSKVEANQVLNGTMNGKDGKVETTANGAFNTLSGFQAAD 554
Query: 563 --------KLFFRNKEG-FDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
KL +KE D+L+ S + + + + ++DTG GIP Q+ +F F
Sbjct: 555 ERNNWDYFKLLLSDKEPHMDELECDRSYQNDCDCVTLMISIEDTGVGIPLHAQDRVFTPF 614
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
+Q + + G G+GL I + + LM G+I+ + G F F+ +L C+
Sbjct: 615 MQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSRP--FVGSTFTFSAVLKRSCK--- 669
Query: 674 PDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLN 733
DT + R+ ++ T +F G A + + G R + RY N L
Sbjct: 670 -DTSSDSKRSLSEALPT-------AFKGMKA--------ILVDGRPVRGAVTRYHLNRLG 713
Query: 734 IKVTIV 739
I V +V
Sbjct: 714 IVVKVV 719
Score = 73.2 bits (178), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 26/149 (17%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK L+V+D+ + L+V +A L K GAK +GK+A +S L++ +D
Sbjct: 838 LIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDA-------VSLLQQPH---CFD 887
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQ----------------YDVHIPIIALTAHAMAGV 1063
MD +MP M+G+EATR IR+ E + + H+P++A+TA +
Sbjct: 888 ACFMDVQMPEMDGFEATRQIRQMEVKANEERKALDLMEGSTFVESHLPVLAMTADVIQAT 947
Query: 1064 ASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
+ + +GMD +++KP +++L V +
Sbjct: 948 YEECIKSGMDGYVSKPFDEEQLYQAVSRL 976
>gi|392399100|ref|YP_006435701.1| signal transduction histidine kinase [Flexibacter litoralis DSM
6794]
gi|390530178|gb|AFM05908.1| signal transduction histidine kinase [Flexibacter litoralis DSM
6794]
Length = 689
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 131/265 (49%), Gaps = 44/265 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A EQAE + K L+ SH++R L AIIG+ L D G ++AEN+ ++ +++
Sbjct: 184 AKEQAEAATKTKEQFLSTMSHEIRTPLNAIIGMTHLLKNDRLEG-EMAENIEILEFSAQN 242
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++NSV+++SK+EAGKM + EF+L L++ V+++ +K + + D ++
Sbjct: 243 LLSLINSVLDISKMEAGKMAFEQAEFDLPILIQNTVEIFKARAEEKNI-FLRSNIDKNIP 301
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
S + GD +L QIL NL+ N++KFT EG +++ +
Sbjct: 302 KS--LLGDSTRLSQILNNLIGNAIKFTDEGTVTITVRL---------------------- 337
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
LH LL F + DTG GI +K NSIFE+F Q +E
Sbjct: 338 ---------------LHHKTEKVELL---FAISDTGIGISSEKINSIFEDFSQAEEDTSR 379
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAI 647
G GLGL I + +V L G I +
Sbjct: 380 KYGGTGLGLAITKQLVELQGGTINV 404
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 11/142 (7%)
Query: 944 LQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVC 1003
+Q + A + K L G + L+VED+ + + L GA ++ NG+ A D
Sbjct: 425 IQAITANLPDATNIKNLKGVRILIVEDNKVNQILVRKFLNNWGASSQIAENGQIALDLF- 483
Query: 1004 KILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGV 1063
K +D ++MD +MPVM+G+E+ R +R EE D PIIALTA +
Sbjct: 484 ----------KKDNFDVVLMDLQMPVMDGYESARQMRLLEENTDKFTPIIALTASTLLNE 533
Query: 1064 ASKIVDAGMDFHLTKPLQKDKL 1085
+I+ GM+ L+KP ++L
Sbjct: 534 RERIIQVGMNDFLSKPFNPNEL 555
>gi|186683828|ref|YP_001867024.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186466280|gb|ACC82081.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1888
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 139/277 (50%), Gaps = 42/277 (15%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
A+ + K+ LA SH++R L AI+G ++ D T+ +NL +I + LL +
Sbjct: 1404 ADAANRAKSEFLANMSHELRTPLNAILGFTQIMSHDRALSTEHQQNLAIINRAGEHLLNL 1463
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH 506
+N ++EMSKIEAG++ L F+L +LLE + +M KG+++ + S L +
Sbjct: 1464 INDILEMSKIEAGRITLNLNSFDLIRLLENLEEMLRFRATSKGLELNFEYT--SYLPQ-Y 1520
Query: 507 VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFF 566
++ D KL+Q+L NL+ N++KFT G + +R A++ N+ K L
Sbjct: 1521 IQADESKLRQVLLNLLGNAIKFTDTGRVMLRVAME-------------NMGEKILP---- 1563
Query: 567 RNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEG 626
P+L FEV DTG+GI + N +FE F Q ET Q+G
Sbjct: 1564 ----------------HPPHLF---FEVTDTGRGIAPQEINLLFEAFGQT-ETGRKSQQG 1603
Query: 627 LGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
GLGL I + V LM G+I++ GE G F F++
Sbjct: 1604 TGLGLAISRKYVELMGGDISVTSI-IGE-GSTFAFDI 1638
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 22/142 (15%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
N + LVV+D V +L +G + NG EA + L
Sbjct: 1665 NEYRILVVDDSIDSRLVLVKILTSIGFAVQEAANGTEAIALWQQWQPHL----------- 1713
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIP-----IIALTAHAMAGVASKIVDAGMDFH 1075
I MD MP+M+G+EAT++I+ EE IP IIALTA+A + AG D +
Sbjct: 1714 IFMDMRMPIMDGYEATKIIKAREE---TSIPNRKTIIIALTANAFEEQREATIKAGCDDY 1770
Query: 1076 LTKPLQKDKLLDVVKSIDETME 1097
+ KP ++++LL K + E +E
Sbjct: 1771 INKPFREEELL---KKLSEYLE 1789
>gi|118790684|tpd|FAA00249.1| TPA: histidine kinase [Oryza sativa Japonica Group]
Length = 1187
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 156/315 (49%), Gaps = 46/315 (14%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
+AE + K+ LA SH++R + ++G++++ D T + + + K L+
Sbjct: 573 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM-DTELDTTQRDFVVTAQESGKSLIN 631
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N V++++KIE+GK+EL F++ +L+ VV ++ KG+++ +VL S
Sbjct: 632 LINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIEL-------AVLVSD 684
Query: 506 HVR----GDRVKLKQILCNLVSNSMKFTSEGHISVRA----AVKKKSFKQD--------I 549
V GD + +QI+ NLV NSMKFT +GHI +R VK+K D +
Sbjct: 685 QVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEV 744
Query: 550 IASNRNVIS-KCLSKLFFRNK----EGF----DDLDALHSVERNPNLLQFEFEVDDTGKG 600
A+++N + LS L N E F D DA+ SV NLL V+DTG G
Sbjct: 745 TANSKNTMPYNTLSGLEVANNRKTLESFRMFKDSSDAIDSV----NLL---VTVEDTGIG 797
Query: 601 IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
I KD Q IF F+Q + G G+GL I + +V LM GEI K GV
Sbjct: 798 ITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKP----GVSST 853
Query: 661 FNVLLTAVCERERPD 675
F+ TA+ + R D
Sbjct: 854 FS--FTAIFKENRKD 866
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 28/148 (18%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK LVV+D+A+ V + L K GA +GKEA +S L+ K +D
Sbjct: 1037 LTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEA-------ISRLQPPHK---FD 1086
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHIPIIALTAHAMA 1061
MD +MP M+G+EATRL+R E + + H+PI+A+TA +
Sbjct: 1087 ACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHVPILAMTADVIQ 1146
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
++ GMD ++ KP ++ +L V
Sbjct: 1147 ATFEGCMECGMDGYVAKPFEEQQLYSAV 1174
>gi|260903049|ref|ZP_05911444.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
gi|308108353|gb|EFO45893.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
Length = 873
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 154/313 (49%), Gaps = 65/313 (20%)
Query: 368 KREM--FLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP 425
+REM L +AL K AT+ K+ LA SH++R + AI+G+ E+ E+ N
Sbjct: 354 RREMEKRLSSALDKSKKATQA-------KSEFLANMSHEIRTPMNAIMGISEILLENENR 406
Query: 426 GTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVG 485
+ E L L+ + +L+ I+N +++ SK+EAGK+ LVEEEF+L L+E + +
Sbjct: 407 -REPRELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQA 465
Query: 486 IKKGVDVVLD-PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
KK + +++D P + + V GD+ ++ QIL NL+ N++KFT EGH+ ++
Sbjct: 466 DKKNLKLLVDIPLAMNTV----VVGDKGRINQILLNLIGNAVKFTDEGHVLLKV------ 515
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
R E L F+F V DTG GIP+D
Sbjct: 516 ----------------------RESE-----------------LGFDFSVTDTGIGIPED 536
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
+ I ++F QV +A EG GLGL I + ++ + GE+ + G CF F++
Sbjct: 537 RLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCV--HSDFGNGSCFSFSLQ 594
Query: 665 LTAVCERERPDTD 677
L +R +P ++
Sbjct: 595 LP---KRSQPHSE 604
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LV ED I + +L G K + +G EA + K L D ++ D
Sbjct: 743 LLVAEDSHINRILIEKMLQDTGVKLTLAEDGVEAVELY-----------KQLSPDLVITD 791
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
MP +G+ T+ IR+ +E + PI+A +AHAM K + GM+ +LTKP+QK
Sbjct: 792 ISMPNKDGFGVTKDIRELQENGEFPWCPIVAFSAHAMQEEQQKSIALGMNDYLTKPVQKS 851
Query: 1084 KLLDVV 1089
LLD++
Sbjct: 852 DLLDMI 857
>gi|242278764|ref|YP_002990893.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
gi|242121658|gb|ACS79354.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
Length = 822
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 143/285 (50%), Gaps = 44/285 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A + AE+ + K+ LA SH++R L AIIGL +L + T AE+L L++ +
Sbjct: 310 ITARDAAEKANRFKSRFLASMSHEIRTPLNAIIGLTDLTLR-SELSTKQAEDLELVKISA 368
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
LL ++N ++++SK+EA + L E +F+L++ + +VV KG+ + ++ D
Sbjct: 369 DQLLTLINDILDLSKVEARMLTLEESDFSLSEAMRDVVRSMEQQARDKGLALNIEVDDDV 428
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
C GD+V+LKQIL NL+ NS+KFT G + V+
Sbjct: 429 PEAVC---GDQVRLKQILYNLIGNSIKFTENGGVFVQ----------------------- 462
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+SKL +++ D+ L SV DTG GIP +KQN +FE F Q ++
Sbjct: 463 VSKL--EDRKDSDEAVILVSVR-------------DTGIGIPDEKQNIVFESFRQADDST 507
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + +V +M G I + E G F F+V+L
Sbjct: 508 TRKFGGTGLGLAISRELVEMMGGRIGVKSSEG--FGSVFSFHVVL 550
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 12/126 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L+VED+ I + V +++L K+G EV NG EA + I DL ++MD
Sbjct: 579 ILLVEDNPINVLVATSLLEKMGHSVEVASNGLEAVSMLSGIDVDL-----------VLMD 627
Query: 1025 CEMPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
EMP M+G+ A+ IR+ ++PIIA+TAHAM GV K AGM+ ++ KP+Q
Sbjct: 628 LEMPEMDGFSASMSIRRGRAGDAARNVPIIAMTAHAMTGVKDKCAKAGMNDYIAKPVQYV 687
Query: 1084 KLLDVV 1089
L DV+
Sbjct: 688 DLRDVI 693
Score = 41.2 bits (95), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LVVED +L + G K + NG+ A ++L D D ++ D
Sbjct: 6 ILVVEDSLTQAVKLEYILFEKGFKVSLVSNGENAL----QLLEDK-------DVDLVISD 54
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
MP M+G+E IRK DV P+I LT+ + G K + +G +TKP +
Sbjct: 55 VVMPGMDGYELCEKIRKNSRYKDV--PVILLTSLSEPGDIIKGLKSGATNFVTKPYDEGF 112
Query: 1085 LLDVVKSI 1092
L+ ++S+
Sbjct: 113 LISRIESV 120
>gi|428311040|ref|YP_007122017.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252652|gb|AFZ18611.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1712
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 138/283 (48%), Gaps = 45/283 (15%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELC--------HEDANPGTDLAENLGLIRTCSKDLLG 445
K+ LA SH++R L I+G +L HE + E LG+I + LL
Sbjct: 1214 KSEFLANMSHELRTPLNTILGFTQLMSHERTSLGHETHSLSPQQQEYLGIINRSGEHLLA 1273
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N ++ MSKIEAG++ L E F+L +LL+ + M+ I + + ++ + +V
Sbjct: 1274 LINDILSMSKIEAGRLTLDENSFDLYRLLDTLEKMFQLKAINQHLKLIFE---RTVDVPQ 1330
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
++ D KL+Q+L NL+ N++KFT G + +R R + ++C
Sbjct: 1331 YIHTDESKLRQVLINLLGNAIKFTPSGQVMLRVV--------------RELQAECW---- 1372
Query: 566 FRNKEGFDDLDALHSVERNPNL--LQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH 623
A+ +P+L FEV+DTG GI ++ +S+F FVQ + T
Sbjct: 1373 -----------AVEPSNSSPHLQPATLRFEVEDTGTGIAPEEIDSLFNPFVQTQ-TGRKS 1420
Query: 624 QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
Q G GLGL I Q V +M GEI ++ G G F+F+V ++
Sbjct: 1421 QSGTGLGLAISQRFVRMMGGEITVSSVVGG--GTIFKFDVRVS 1461
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 34/145 (23%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY--- 1020
+ LVVED K+ + +L LG + +NG+E G AL +
Sbjct: 1488 RILVVEDQLTNRKLLTNLLEPLGFEVREAQNGQE---------------GVALWESWKPH 1532
Query: 1021 -IMMDCEMPVMNGWEATRLIRKEEEQYDVH---------------IPIIALTAHAMAGVA 1064
I MD MPVM+G+EAT+ IR E Q IIA+TA A
Sbjct: 1533 LIWMDIRMPVMDGYEATQQIRARERQQAAQGLNHLCGELSFSYWATVIIAITASAFEEER 1592
Query: 1065 SKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ + AG D + KP + + + + +
Sbjct: 1593 ERFLTAGCDDFVLKPFRAEIIFEKI 1617
>gi|119486187|ref|ZP_01620247.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
gi|119456678|gb|EAW37807.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
Length = 1955
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 132/267 (49%), Gaps = 47/267 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E AE S K +A SH++R+ L AI+G L ++ D +N +I +
Sbjct: 1485 AKEVAEAASEAKGAFIANMSHELRSPLNAILGFSRLLKNNSQISLDERKNAEIIYRSGEH 1544
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V++++KIEA ++ + + NL QL++++ +M+Y ++G++ +
Sbjct: 1545 LLNLINQVLDLAKIEANRITVEPTDLNLDQLIDDIYNMFYLKAQEQGLNFNVQKTSDV-- 1602
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
C + D +KL+Q+ NL+SN++KFT G I++ +VK K S+ NV+
Sbjct: 1603 -PCSICTDEIKLRQVFINLLSNALKFTKRGFITLNISVKSKK-------SDNNVM----- 1649
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
FEV+DTG GI ++Q IFE F Q + G
Sbjct: 1650 ---------------------------LNFEVEDTGVGIAPEEQTDIFEAFNQ---SQAG 1679
Query: 623 HQ--EGLGLGLGIVQSMVHLMKGEIAI 647
Q EG GLGL I + + LM GEI++
Sbjct: 1680 KQVKEGTGLGLAISREFIKLMGGEISV 1706
>gi|357010234|ref|ZP_09075233.1| histidine kinase [Paenibacillus elgii B69]
Length = 398
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 134/277 (48%), Gaps = 54/277 (19%)
Query: 398 LAKASHDVRASLAAIIGLVELCHE-DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKI 456
LA SH++R L +I + +L E D N + E + IR LL ++N ++++SKI
Sbjct: 164 LAMMSHEIRTPLNGVIAMADLLVETDLN--AEQREYVDTIRRSGAALLYVINDILDLSKI 221
Query: 457 EAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGSCHVRGDRVKL 514
E+GKME+ EE NL L E ++++ K +++ +DP + C + GD +L
Sbjct: 222 ESGKMEIKEEPLNLRTSLIETYEVFHAESRSKSLELTYDIDPA----IPECII-GDESRL 276
Query: 515 KQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDD 574
+Q+L NLV N++KFT +G + V AV S +Q
Sbjct: 277 RQVLINLVGNAVKFTEQGGVHVSVAVLSHSEEQ--------------------------- 309
Query: 575 LDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIV 634
L+ EF V DTG GIP++K+ +F+ F QV + G GLGL I
Sbjct: 310 -------------LELEFRVSDTGIGIPEEKRGMLFQPFTQVDSSLTRKYGGTGLGLAIC 356
Query: 635 QSMVHLMKGEIAIADKEPG-ERGVCFRFNVLLTAVCE 670
+++V LM G IA+A PG RG F F + + E
Sbjct: 357 KNLVQLMGGHIALA---PGSRRGAEFVFTIRVKGCVE 390
>gi|334136312|ref|ZP_08509781.1| PAS domain S-box protein [Paenibacillus sp. HGF7]
gi|333606163|gb|EGL17508.1| PAS domain S-box protein [Paenibacillus sp. HGF7]
Length = 912
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 134/272 (49%), Gaps = 52/272 (19%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLI 436
+ A E AE+ K+ LA SH++R + IIG+ +L E T+L+E +I
Sbjct: 502 IRAKESAEKADQAKSEFLAIMSHEIRTPMNGIIGMADLLAE-----TELSEEQQSYADII 556
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
S LL ILN +++ SKIEAGKM + E F++ +L+ VV++++ ++G+ + +
Sbjct: 557 LQSSYALLRILNEILDFSKIEAGKMVVNHEPFDVRSVLDHVVELFHPKAAERGIRLTYE- 615
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTS-EGHISVRAAVKKKSFKQDIIASNRN 555
DG + + + GD L+QI+ NLV N++KFT +GH+S+ A + K + D +
Sbjct: 616 LDGGIPST--LIGDEGILRQIIVNLVGNAIKFTEKDGHVSLSAKLDKMPGRSDAV----- 668
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
+F V DTG GIP DKQ+ +F+ F Q
Sbjct: 669 ----------------------------------LQFSVRDTGIGIPADKQSQLFQSFSQ 694
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
+ T G GLGL I + +V L+ G I +
Sbjct: 695 LHPTINRKYGGTGLGLAICKKLVELLGGAIGV 726
Score = 47.0 bits (110), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 947 VAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKIL 1006
V+ + G K LV +D+ + + +L KLG + + NG EA V L
Sbjct: 770 VSDRESGALPPPEFGPMKLLVADDNPVNRLLLITLLKKLGYEADYAENGAEALKAV---L 826
Query: 1007 SDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVAS 1065
SD YD + MD +MP M+G+E T IR+ + D P I+A+TA A
Sbjct: 827 SDT--------YDMVFMDLQMPEMDGFETTAAIRR--LKGDASRPAIVAVTAFAQKEDMQ 876
Query: 1066 KIVDAGMDFHLTKPLQKDKLLDVVK 1090
+ +GM+ ++KP+ ++ V+K
Sbjct: 877 MCLASGMNDFISKPVFAPEVERVLK 901
>gi|255036287|ref|YP_003086908.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
18053]
gi|254949043|gb|ACT93743.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
18053]
Length = 785
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 144/306 (47%), Gaps = 47/306 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A EQAE ++ K+ L+ SH++R + A+IG L + +P + E L +++ +
Sbjct: 402 IKAKEQAEMAAVAKSQFLSTMSHEIRTPMNAVIGFTHLLLQQ-DPKPEQMEYLNILKFSA 460
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
++LL ++N +++ SKIEAGK+E E +FN+ LLE + +KG+ + L +
Sbjct: 461 ENLLVLINDILDFSKIEAGKIEFEEVDFNVLALLENIRSGVLQKANEKGIMLKLKVSNDV 520
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ V GD +L QIL NLVSN++KFT G +++ AAV ++ K I
Sbjct: 521 ---NIMVVGDPTRLGQILTNLVSNAVKFTESGKVTISAAVSARADKHVTI---------- 567
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+F V+DTG GIP +K +IF+ F Q
Sbjct: 568 ------------------------------DFRVEDTGIGIPPEKLENIFDSFTQATSDT 597
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
G GLGL I + ++ L K I + D E G G F F+ L + E+ +
Sbjct: 598 TRKYGGSGLGLTITKRLLELQKSNIHV-DSEQG-NGSAFYFS-LSFPISEKHLTELANGA 654
Query: 681 PRTHND 686
P H D
Sbjct: 655 PANHFD 660
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 11/132 (8%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G K L+VED+ I + + + + ++++ NG+ A + V +A YD
Sbjct: 661 LQGMKLLIVEDNNINVLLMKNFMKQWNVQYDLAENGRVALEKV-----------QANDYD 709
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MP M+G+EAT IR + +PIIALTA AM + GM+ +++KP
Sbjct: 710 LVLMDLQMPEMDGYEATHHIRHLPGEKYRQLPIIALTASAMMDIKDIAFTVGMNDYISKP 769
Query: 1080 LQKDKLLDVVKS 1091
+L + S
Sbjct: 770 FSPAELYAKIAS 781
>gi|253698713|ref|YP_003019902.1| histidine kinase [Geobacter sp. M21]
gi|251773563|gb|ACT16144.1| histidine kinase [Geobacter sp. M21]
Length = 588
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 135/284 (47%), Gaps = 53/284 (18%)
Query: 398 LAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKI 456
LA SH++R + ++G+ EL H + + ++ + LL I+N ++ +SKI
Sbjct: 201 LANMSHEIRTPMNGVLGMAELLLHSELDEKQ--KSYAKMLHHSGESLLDIINDILNISKI 258
Query: 457 EAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQ 516
EAGK+E+ F+L + V++Y VG KGV V L + + C V GD +L+Q
Sbjct: 259 EAGKLEIERIPFDLHETARGAVELYREVGRGKGVAVELQIEED--VPRC-VAGDPNRLRQ 315
Query: 517 ILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLD 576
+L N+V+N +KFT +G + VR ++
Sbjct: 316 VLINVVNNGLKFTEKGSVQVRVSL------------------------------------ 339
Query: 577 ALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQS 636
VE+N N FEV DTG GIP D +IF+ F QV + G GLGL I +
Sbjct: 340 ----VEQNQNGQYVGFEVKDTGIGIPADSIGAIFDLFAQVDGSTTRKYGGTGLGLAIAKQ 395
Query: 637 MVHLMKGEIAIADKEPGERGVCFRFNVLL-----TAVCERERPD 675
+V LM GEI + + EPG+ G F F V L A+CE E D
Sbjct: 396 LVELMGGEIGV-ESEPGQ-GSTFTFIVFLHQQVDQALCEEEGAD 437
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 75/126 (59%), Gaps = 11/126 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ + +V A++ LG + +V ++G+EA + + PYD I M
Sbjct: 458 RVLLAEDNPVNCEVAFAMIAALGCQVDVAQDGREAVEAFSR-----------QPYDLIFM 506
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
DC+MP M+G++ATR IR+ E H +IALTAHAMAG + AGMD +L+KP +
Sbjct: 507 DCQMPEMDGYQATRAIRQRELGSGKHTTVIALTAHAMAGAREYCLTAGMDDYLSKPFNLE 566
Query: 1084 KLLDVV 1089
+L +++
Sbjct: 567 QLQELI 572
>gi|357138197|ref|XP_003570684.1| PREDICTED: histidine kinase 4-like [Brachypodium distachyon]
Length = 970
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 111/426 (26%), Positives = 189/426 (44%), Gaps = 75/426 (17%)
Query: 356 LGLFIILIAKAAKREMFLCAALIKQMNATE----------QAERKSMNKTFALAKASHDV 405
LG F+I + +CAA + TE QAE + K+ LA SH++
Sbjct: 313 LGAFVIWMLVG----YIICAAWSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATVSHEI 368
Query: 406 RASLAAIIGLVELCHEDANPGTDLA----ENLGLIRTCSKDLLGILNSVMEMSKIEAGKM 461
R + ++G++++ GTDL + + C + L+ ++N V++ +KIEAG++
Sbjct: 369 RTPMNGVLGMLDMLL-----GTDLTMTQKDFAQTAQMCGRALITLINDVLDRAKIEAGRL 423
Query: 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNL 521
EL F+L L+++V+ ++ +K +++ + CD V GD + +QIL NL
Sbjct: 424 ELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDV---PKLVVGDPWRFRQILTNL 480
Query: 522 VSNSMKFTSEGHISVRAAVKKKS-------------FKQDIIASNRNVISKCLS------ 562
V N++KFT GH+ VR + + S K + S N LS
Sbjct: 481 VGNAVKFTDRGHVFVRVCLAENSNVEANQVLNVTLNGKDGKVESTANGALNTLSGFQAAD 540
Query: 563 --------KLFFRNKEGF-DDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
KL +KE ++L+ S + + + + ++DTG GIP Q+ +F F
Sbjct: 541 ERNSWEYFKLLLSDKESLSNELEGEKSNQNDSDHVTLMISIEDTGVGIPLHAQDRVFTPF 600
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
+Q + + G G+GL I + + LM G+I+ + G F F +AV +R
Sbjct: 601 MQADSSTSRNYGGTGIGLSISKCLAGLMGGQISFTSRP--SIGSTFTF----SAVVKRSC 654
Query: 674 PDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLN 733
DT + R+ ++ T +F G A + + G R + RY N L
Sbjct: 655 KDTSSDSKRSLSETLPT-------AFSGMKA--------ILVDGRAVRSAVTRYHLNRLG 699
Query: 734 IKVTIV 739
I V +V
Sbjct: 700 IIVQVV 705
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 26/149 (17%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK LVV+D+ + L+V +A L K GAK +GK+A +S L+ +D
Sbjct: 824 LVGKNILVVDDNKVNLRVAAAALKKYGAKVHCVESGKDA-------ISLLQPPHH---FD 873
Query: 1020 YIMMDCEMPVMNGWEATRLIRK-----EEEQ-----------YDVHIPIIALTAHAMAGV 1063
MD +MP M+G+EATR IR+ EEQ + H P++A+TA +
Sbjct: 874 ACFMDVQMPEMDGFEATRQIREMEKKANEEQKKLTSTEGSTFVEWHSPVLAMTADVIQAT 933
Query: 1064 ASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
K + +GMD +++KP +++L V +
Sbjct: 934 YEKCMKSGMDGYVSKPFDEEQLYQAVSRL 962
>gi|71905882|ref|YP_283469.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
gi|71845503|gb|AAZ44999.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
Length = 1005
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 135/292 (46%), Gaps = 45/292 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A + AE S K+ LA SH++R + AI+GL L D D A++L I ++
Sbjct: 258 AKDAAESASRTKSAFLANMSHEIRTPMNAIVGLTHLLRRDTTTPKD-AKHLDKINLAAQH 316
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL I+N +++ SKIEA K+ + E +F Q+ +++ + + KG++VV D D +
Sbjct: 317 LLSIINDILDFSKIEADKLIIDEADFEFEQIFQQLNTLITPQAMDKGLEVV-DRIDPEIP 375
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
H GD ++L QIL N SN++KFT G I RA +
Sbjct: 376 AVVH--GDAMRLGQILANFASNAVKFTEHGSIVFRARL---------------------- 411
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+E+ NLL+ FE+ DTG G+ ++++ +F F Q +
Sbjct: 412 ------------------LEQIGNLLRIRFEITDTGIGLAPEQRDRLFLPFEQADTSTTR 453
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
G GLGL I + + LM G I + D PG+ + L A + ERP
Sbjct: 454 KFGGTGLGLAISKRLTELMNGRIGV-DSTPGQGSTFWCELPLQCAHSQHERP 504
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 13/131 (9%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
PL+G + L+ ED+ I +V +L +G + ++ +G++A + A Y
Sbjct: 655 PLSGHRVLLAEDNPINQEVALELLKDVGLRVDIAEDGRQAVELAA-----------ANDY 703
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D I+MD +MP M+G EAT IR ++ PI+A+TA+A + AGM+ H+ K
Sbjct: 704 DLILMDIQMPNMDGIEATHAIRHLPQR--TATPILAMTANAFNEDRDACLGAGMNDHIAK 761
Query: 1079 PLQKDKLLDVV 1089
P+ KL + +
Sbjct: 762 PVDPQKLYEAL 772
Score = 44.3 bits (103), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L+++DD L+ S +L A+ +G+ + V L++ R +D ++ D
Sbjct: 515 ILLIDDDPNALEAISHMLKAYDARITTADSGEAGLNCVHSALAEGRH------FDLVLTD 568
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
MP M+G E +R IR+ Q I+ +TA+ ++ +AG+ + + KP+
Sbjct: 569 WAMPGMDGIETSRRIREILPQAPR---IVLVTAYGREWPMERLREAGIVYQINKPV 621
>gi|300866840|ref|ZP_07111517.1| Sensor protein [Oscillatoria sp. PCC 6506]
gi|300335150|emb|CBN56677.1| Sensor protein [Oscillatoria sp. PCC 6506]
Length = 1017
Score = 120 bits (301), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 140/286 (48%), Gaps = 37/286 (12%)
Query: 366 AAKREMFLCAALIKQMNATEQA-ERKSMN---KTFALAKASHDVRASLAAIIGLVELCHE 421
A R + A L A EQA ER ++ K+ LAK SH++R + AI+G ++
Sbjct: 517 AEMRNTLMLAMLEFSQAALEQAAERAAIANRAKSQFLAKMSHELRTPMNAILGFTQIMSR 576
Query: 422 DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481
N + E+LG+I + LL ++N V+EMSKIEAG++ L E F++ + + + +M+
Sbjct: 577 SQNIPPEFQEHLGIISRSGEHLLTLINDVLEMSKIEAGQLVLTESCFDIVRFIHSIQEMF 636
Query: 482 YHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541
+KG+ + + + + +V GD+ KL+QIL NL+SN++KFT G I++R V
Sbjct: 637 ALKASEKGLMLRI---EQEINVPPYVYGDQAKLRQILINLLSNAIKFTINGSITLRIKVI 693
Query: 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGI 601
+ DD VE + + EV+DTG GI
Sbjct: 694 PE----------------------------IDDAIDSSKVEALGSAIALYLEVEDTGCGI 725
Query: 602 PKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
S+FE F+Q + H +G GLGL I + LM G+I +
Sbjct: 726 ALCDLESVFEAFMQTERGR--HAQGTGLGLSISRQFARLMGGDITV 769
Score = 53.1 bits (126), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 17/128 (13%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVC--RNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
+ LV ED + + +L +G FEVC NG EA C D P+ I
Sbjct: 813 RILVAEDVLVNRHLLVTLLESVG--FEVCAVTNGIEAI--AC--WQDWH------PH-LI 859
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD EMP M+G+EATR IR Q +V I+ALTA+A + + AG D ++ KP
Sbjct: 860 FMDIEMPEMDGYEATRQIRARGVQDNV--AIVALTAYAFEEDRTASLQAGCDDYIAKPFT 917
Query: 1082 KDKLLDVV 1089
+ L D +
Sbjct: 918 ETILFDKI 925
>gi|451946365|ref|YP_007466960.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
gi|451905713|gb|AGF77307.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
Length = 932
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 154/344 (44%), Gaps = 53/344 (15%)
Query: 365 KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
+ KR + L A+ + + EQA+ + K+ LA SH++R + I+G+ E+ D +
Sbjct: 246 QVQKRTVELKKAMDEAIVLAEQAQAANKAKSQFLANMSHEIRTPMNGILGMAEMAL-DTD 304
Query: 425 PGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHV 484
+L ++ I + + LL I+N +++ SKIEAGK+EL FNLA L+E+V M +
Sbjct: 305 LDKELRSSIETIMSSGESLLTIINDILDFSKIEAGKLELETINFNLALLVEDVAQMLAYR 364
Query: 485 GIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
KG++++++ D S +V GD +L+Q+L NL+ N++KFT G I ++
Sbjct: 365 AHAKGLELIVNVPDNI---SSYVSGDPSRLRQVLVNLLGNAIKFTDHGEILLQ------- 414
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
L + N F V DTG GI +D
Sbjct: 415 ---------------------------------LTLLGETDNEASLRFSVQDTGIGISED 441
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
+ ++F F Q ++ G GLGL I + +V LM GEI + G G F V
Sbjct: 442 EYETLFHPFSQADDSTTRKYGGTGLGLAISRQLVELMGGEINCNSRPGG--GSEFWMEVT 499
Query: 665 LTAVCERERPDTDEEDPRTH-------NDWPQTGLHQHFASFWG 701
L E + E D ++ ++ L +H WG
Sbjct: 500 LDKASGTEVVASTEADKLSNLRAIIIDDNATNRRLLEHQMEIWG 543
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LV ED+ +V VL KLG K + +NG+EA K +D ++MDC
Sbjct: 671 LVAEDNVTNQQVAMGVLRKLGCKVTLTKNGQEALQFFEKN-----------SFDIVLMDC 719
Query: 1026 EMPVMNGWEATRLIRKEEEQYDV--HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
+MP M+G+EAT IR+ E D P++ALTA+A+ G K + AGMD +++KP
Sbjct: 720 QMPRMDGYEATSAIRRLENMKDRGKRTPVVALTANALTGDREKCLAAGMDDYISKPFSLQ 779
Query: 1084 KLLDVVK 1090
++ V+K
Sbjct: 780 QVEKVLK 786
>gi|428770660|ref|YP_007162450.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
gi|428684939|gb|AFZ54406.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
Length = 1244
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 132/270 (48%), Gaps = 48/270 (17%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A +QA+ S KT LA SH++R + IIG+ EL D ++ + +I S
Sbjct: 720 LKAEKQAKEASEAKTEFLASMSHEIRTPMNGIIGMTELLL-DTQLNSEQKNFVEIINHSS 778
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL--DPCD 498
LL I+N ++++SKIE+ K++L FN+ + LE V+ + KKG++++ +P D
Sbjct: 779 NTLLTIINDILDLSKIESKKIDLESTTFNIHECLESVISLMELQAEKKGINLIYIANPQD 838
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
+GD +L+Q++ NLVSN++KFT +G + VR V + +
Sbjct: 839 NYWF-----KGDVTRLRQVVLNLVSNAVKFTHQGEVIVRLNVASQE------------LD 881
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
C K+ V+DTG GIP+D++ SIF+ F QV
Sbjct: 882 SCYLKII----------------------------VEDTGIGIPQDRRESIFQAFSQVDA 913
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIA 648
+ G GLGL I + +V LM G + ++
Sbjct: 914 STTRQYGGTGLGLTIARKLVELMGGSLTVS 943
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 15/130 (11%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L+VED+ + KV +L KLG ++ E+ NG EA + + Y I MD
Sbjct: 1121 LLVEDNLVNQKVARLMLNKLGYRWIEIANNGLEAIKMI-----------QNKTYQLIFMD 1169
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
+MP+++G T+ IRK Q + P IIA+TA A++ ++ GM+ +L+KP++ D
Sbjct: 1170 MQMPLLDGVATTKEIRKLGNQ--IQQPWIIAMTASALSTDRDSCLEIGMNDYLSKPVKSD 1227
Query: 1084 KLLDVVKSID 1093
++ +K +
Sbjct: 1228 TIIQALKRFE 1237
>gi|427710152|ref|YP_007052529.1| multi-sensor hybrid histidine kinase [Nostoc sp. PCC 7107]
gi|427362657|gb|AFY45379.1| multi-sensor hybrid histidine kinase [Nostoc sp. PCC 7107]
Length = 994
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 145/293 (49%), Gaps = 48/293 (16%)
Query: 359 FIILIAKAAKREMFLCA---ALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGL 415
F I +A+ K + L A + + A EQAE + K+ LAK SH++R L AI+G
Sbjct: 490 FEIEVAQEMKNNLMLAALEFSHVALQQAAEQAEIANRAKSQFLAKMSHELRTPLNAILGF 549
Query: 416 VELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLE 475
++ +++ E+L +I + LL ++N V+EMSKIEAG++ L E F+L +L+
Sbjct: 550 TQIMTRNSSLSQSDKEHLDIISRSGEHLLALINDVLEMSKIEAGQITLNESCFDLYRLIY 609
Query: 476 EVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHIS 535
+ +M+ KG++++ D S + +V GD KL+QIL NL+ N++KFT G+++
Sbjct: 610 SIQEMFALKASDKGLNII---TDLSAEVNQYVCGDEGKLRQILINLLGNAIKFTIVGYVA 666
Query: 536 VRAA-VKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEV 594
+R + V SF ++ + + EF +
Sbjct: 667 LRVSYVDHASFPKE------------------------------------SDKINVEFAI 690
Query: 595 DDTGKGIPKDKQNSIFEEFVQVKETALGHQ--EGLGLGLGIVQSMVHLMKGEI 645
+DTG GI + IFE F Q K G Q +G GLGL I + LM G+I
Sbjct: 691 EDTGLGIAAEDLELIFEAFAQAKG---GRQFMQGTGLGLAISRQFARLMGGDI 740
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 62/126 (49%), Gaps = 17/126 (13%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVC--RNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
+ L+VED ++ +L +G FEVC NG A D +CK A I
Sbjct: 787 RILIVEDVVENRQLMVKLLKFVG--FEVCAAENGLTAVD-ICK----------AWQPHLI 833
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD +MPVMNG+EAT+ IR Q V + IIALTA A +I+ G D + KP
Sbjct: 834 WMDIQMPVMNGYEATKQIRA-HTQSKV-LAIIALTASAFEEDRQEILQVGCDDFVAKPFD 891
Query: 1082 KDKLLD 1087
+ L D
Sbjct: 892 ETVLFD 897
>gi|428227107|ref|YP_007111204.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427987008|gb|AFY68152.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 1170
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 134/281 (47%), Gaps = 54/281 (19%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE-DANP-GTDLAENLGLIRTCS 440
A ++AER S K+ LA SH++R + A++G+ L + D NP D E I+
Sbjct: 504 ARKEAERASQLKSIFLATMSHEIRTPMNAVLGMTGLLLDTDLNPEQRDYVET---IQVSG 560
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL--DPCD 498
LL ++N +++ SK+EAG+MEL EFN LEEV D+ KG+++ + DP
Sbjct: 561 DALLTLINEILDFSKLEAGEMELEILEFNPKDALEEVADLLAPSAHAKGLEMAVWSDPQ- 619
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
L C + GD +L+Q+L NLV N++KFT++G + +RAA+ + S +
Sbjct: 620 ---LPPCLL-GDVSRLRQVLINLVGNAIKFTAQGEVVIRAALLRASASE----------- 664
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
+ EF V DTG GI + Q IF+ F QV
Sbjct: 665 -----------------------------ARLEFSVSDTGIGIQPEAQKRIFQPFSQVDA 695
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
+ G GLGL I + + LM G I + + ERG F
Sbjct: 696 SMTRLYGGTGLGLAICRQLTELMGGAIGVESE--WERGSRF 734
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 84/152 (55%), Gaps = 18/152 (11%)
Query: 934 GASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCR 993
G + S SS + +Q + + KP K LVVED A+ KV L +LG +V
Sbjct: 909 GCYLESWSSS--PLPSQWAMQTTTKP----KILVVEDSAVNQKVALKQLERLGYAADVAA 962
Query: 994 NGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPII 1053
NG+EA + + +PYD ++MDC+MPV++G+ ATR++R E+ H +I
Sbjct: 963 NGQEALQML-----------ETIPYDIVLMDCQMPVLDGYSATRMLRSREDGQR-HTIVI 1010
Query: 1054 ALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
A+TA+AM ++AGMD +L KP++ D L
Sbjct: 1011 AMTANAMTEDRDLCLEAGMDDYLCKPIRIDDL 1042
>gi|158339431|ref|YP_001520608.1| two-component hybrid sensory histidine kinase [Acaryochloris marina
MBIC11017]
gi|158309672|gb|ABW31289.1| two-component hybrid sensory histidine kinase, putative
[Acaryochloris marina MBIC11017]
Length = 691
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 143/281 (50%), Gaps = 35/281 (12%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A +QA + + K+ L SH++R L A++G +L + + + L I C K
Sbjct: 209 AKQQAVKANQAKSVFLGNMSHELRTPLNAVLGYTQLLAREPQLQS-FTKELETINRCGKH 267
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V+++S+I++G++ L + FN +LL+ + D++ KG+D L+ GS L
Sbjct: 268 LLALINDVLDLSRIDSGQVVLNIDTFNFHELLKTLKDIWTTKAQHKGLDYQLEW--GSDL 325
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+VR D KL+Q+L NL+SN++KFT +GHI+ R V+SK
Sbjct: 326 PH-YVRTDEGKLRQVLMNLLSNAIKFTEQGHITFR-------------IHQTTVVSKL-- 369
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
N+E LH + P+ FEV D+G GI + +IF F+Q ++
Sbjct: 370 -----NEE-------LH-LPLTPHYW-LNFEVRDSGPGISVSELENIFHPFIQGEQARSV 415
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
EG GLGL I V LM G ++++ G CF+F+V
Sbjct: 416 VDEGTGLGLAISHQFVSLMGGNLSVSSSLGA--GSCFKFSV 454
>gi|399889500|ref|ZP_10775377.1| PAS/PAC sensor hybrid histidine kinase [Clostridium arbusti SL206]
Length = 787
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 145/281 (51%), Gaps = 50/281 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++A++ + K+ LA SH++R + I+G+ +L E E L ++++ S
Sbjct: 401 AKQEADKANAAKSQFLANMSHEIRTPMNGILGVAQLL-EFTQLNKQQIEYLDILKSSSNH 459
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGS 500
LL I+NS++++SKIE+GK++L E FN+ ++++ ++ + KKG++++ LDP
Sbjct: 460 LLDIINSILDISKIESGKLQLNFEVFNIREVIDMIIKELSVIARKKGIEIMYYLDP---- 515
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ GD V+L QIL NL++N++KFT GHI ++ ++K
Sbjct: 516 -FIKYDLIGDVVRLNQILINLINNAVKFTDSGHIYLK-------------------VNKV 555
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
F+D D ++ EF ++DTG GI D ++ IF+ F Q + T
Sbjct: 556 -----------FEDTDK----------VKLEFSIEDTGIGIEDDFKDKIFKIFTQAETTY 594
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
G GLGL I + +V +M G+I + E G +G F F
Sbjct: 595 TKKYGGTGLGLAISRELVRMMNGDIWF-ESEIG-KGSTFYF 633
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K LVVED+ I ++ L +LG K+ C NGKEA V E + D I+
Sbjct: 666 KTILVVEDNEINREIALGFLNQLGYKYISCSNGKEAISVV---------EDRNNHIDIIL 716
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MD +MP++NG+EAT IRK E+ + H PII +TA+AMAG K ++ GMD +++KP
Sbjct: 717 MDIQMPILNGFEATDTIRKAEKLTENHTPIIGMTAYAMAGDREKAIECGMDDYISKPFSI 776
Query: 1083 DKLLDVVK 1090
D L V+K
Sbjct: 777 DTLRIVLK 784
>gi|90022133|ref|YP_527960.1| ribosomal-protein-alanine acetyltransferase [Saccharophagus
degradans 2-40]
gi|89951733|gb|ABD81748.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
2-40]
Length = 1109
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 142/281 (50%), Gaps = 46/281 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A +AE S K+ LA SH++R + ++G++ L +++ + L L ++ +
Sbjct: 408 AKNEAESSSRAKSEFLACMSHEIRTPMNGVLGMLGLVL-NSSLTPEQERKLLLAQSSGQS 466
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N +++ SK+EAGK+EL +F+ +LL +VV + + +KG+++VLD L
Sbjct: 467 LLSVINDILDYSKVEAGKLELEHLDFDPHRLLSDVVQSFNYSAQEKGIELVLDDIG---L 523
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
G +RGD +L+QI+ NL+SN++KFTS+G I VRA +
Sbjct: 524 GGKVLRGDPSRLRQIINNLLSNALKFTSQGEIIVRAKLDS-------------------- 563
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+++ L+ Q V DTG GIP DK + +F+ F QV +
Sbjct: 564 -----------EINGLN---------QLRCSVTDTGIGIPSDKISGLFDSFTQVDSSTTR 603
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + + +M G+I + E G +G F F V
Sbjct: 604 RYGGTGLGLSICKMLTRIMGGDIFVV-SEVG-KGTRFDFVV 642
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 73/123 (59%), Gaps = 8/123 (6%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED+ + +V + +L G F + +G++A + + DLR Y ++ M
Sbjct: 820 RILVVEDNLVNQQVIAGILEDFGLAFTLVDDGQQAISALKENTGDLR-------YHFVFM 872
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHI-PIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
DC+MPV++G+ AT+ IR+ + I PI+ALTA+AM G K + AGM+ ++ KP+
Sbjct: 873 DCQMPVLDGYNATKQIREGAAGEECKIVPIVALTANAMQGDRDKCLRAGMNDYVAKPVDA 932
Query: 1083 DKL 1085
D++
Sbjct: 933 DEV 935
>gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.]
Length = 1266
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 169/326 (51%), Gaps = 53/326 (16%)
Query: 357 GLFIILIAKAAKREMFLCAALIKQM-NATEQAERKSMNKTFALAKASHDVRASLAAIIGL 415
G I+LIA+ R++ L K++ A E+AE + K LA SH++R + II
Sbjct: 484 GNAIMLIAEG--RDITNMKRLEKELIKAKEKAEVATGAKDEFLANMSHEIRTPMNGIIAA 541
Query: 416 VEL-CHEDANPGTDLAEN-LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473
EL +ED +D A++ L +I T + LL I+N ++++SKIEAGK++L +F + +
Sbjct: 542 SELLSNEDI---SDKAKHYLRIITTSAYSLLEIINDILDVSKIEAGKLDLEIRDFKIEDV 598
Query: 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGH 533
++++V+M++H KK +++++D D + + +RGD ++L QIL NLVSN++KFT +G
Sbjct: 599 IDKLVNMFFHRTSKKFIELLVD-IDPEIPRA--LRGDELRLYQILVNLVSNAVKFTKKGG 655
Query: 534 ISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFE 593
I + VK+ NR+ S + FF
Sbjct: 656 III-VGVKE--------LENRSAESGEVKLRFF--------------------------- 679
Query: 594 VDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
+ DTG GI + IFE F Q + + G GLGL I + +V +M GEI + + EP
Sbjct: 680 IKDTGIGIAHENIEKIFEPFSQADASTTRNYGGTGLGLCICKQLVEMMGGEIRV-ESEP- 737
Query: 654 ERGVCFRFNVLLTAVCERERPDTDEE 679
E+G F F TA+ R+ T+ E
Sbjct: 738 EKGSTFSF----TAIFHRQPKKTERE 759
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 80/133 (60%), Gaps = 13/133 (9%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
+K L G + LV ED+ ++ A+L + G ++ NGKEA D V +
Sbjct: 912 KKRLKGFRVLVAEDNITNQEIALAILEEAGLVVKIVNNGKEAVDAV-----------RES 960
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
+D ++MD +MPVM+G+EATR IRK+ E D +PIIA+TAHAM G + + AGM+ ++
Sbjct: 961 QFDALLMDIQMPVMDGYEATRQIRKDAEFKD--LPIIAMTAHAMKGDEEECLKAGMNGYI 1018
Query: 1077 TKPLQKDKLLDVV 1089
KP+ +D L +V+
Sbjct: 1019 PKPVSQDMLFNVL 1031
Score = 47.0 bits (110), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRK-EGKALPY 1018
L G LVV+D + +L G K E + + + L LR+ E + P
Sbjct: 766 LQGLNVLVVDDCKDSQNIMEKMLESFGFKVESISSAQAS-------LQRLREDETRENPI 818
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D +MMD MP ++G EA+ +IR + +++PII +TA G++ LTK
Sbjct: 819 DLVMMDWLMPGLDGIEASSIIR---DDLKLNVPIIMMTAFGNETQMLYAEKVGVNGFLTK 875
Query: 1079 PLQKDKLLDVV 1089
P+ + L D +
Sbjct: 876 PICQSTLFDAI 886
>gi|221199414|ref|ZP_03572458.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
CGD2M]
gi|221205683|ref|ZP_03578698.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
CGD2]
gi|221174521|gb|EEE06953.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
CGD2]
gi|221180699|gb|EEE13102.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
CGD2M]
Length = 991
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 142/288 (49%), Gaps = 43/288 (14%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN-LGLIRTCSKDLLGILNSVME 452
K+ LA SH++R L A+IG +EL P D L T S LL ILN V++
Sbjct: 504 KSVFLATMSHEIRTPLNAVIGNLELMKR--GPLADAQRRRLHAADTSSTALLHILNDVLD 561
Query: 453 MSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRV 512
+SK+EAG++ + F+ A LL++V + + + +KG+ V+ CD ++ S + GD +
Sbjct: 562 LSKVEAGQLRIDAVPFDCAALLDDVTESFRPLAERKGLSVI---CDVALEPSPYRIGDPI 618
Query: 513 KLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGF 572
+++Q++ NL+SN++KFT GH+ V A + +S
Sbjct: 619 RIRQVVSNLLSNAIKFTDAGHVRVAA----------------HAVS-------------- 648
Query: 573 DDLDALHSVER-NPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631
DA H R + E V DTG GIP+ Q +IF + Q ++ G GLGL
Sbjct: 649 ---DAAHGTGRTDGGAPVVEIVVADTGIGIPEAAQAAIFGLYRQADDSIHRRYGGTGLGL 705
Query: 632 GIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEE 679
+ + ++ M G+IA++ PG G FR + L VC+ ER D E
Sbjct: 706 ALCRRLLDAMNGDIAVS-SAPGA-GSTFRVRIPLP-VCDDERGDASAE 750
>gi|428319605|ref|YP_007117487.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
gi|428243285|gb|AFZ09071.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
Length = 1031
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 153/301 (50%), Gaps = 37/301 (12%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
+A E+A + K+ LA SH++R L AI+G +L + + E+LG+I +
Sbjct: 530 HAAERAAIANRAKSQFLANMSHELRTPLNAILGFTQLMNRSPYIPEEFQEHLGIITRSGE 589
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL +++ V++MS+IEAG++ L + FNL +LL + +M+ +KG+ + + D +V
Sbjct: 590 HLLTLIDDVLQMSRIEAGQLVLSKSCFNLHRLLGSINEMFTIKAPEKGLHLSSE-WDATV 648
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+V GD+ KL+QIL NL+ N++KFT+ G I++R ++F D + S
Sbjct: 649 --PRYVCGDQAKLRQILINLLGNALKFTTTGSIALRG----RAFSSDDMPSGT------- 695
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
R++ A + + P + EV+DTG GI SIF+ F+Q
Sbjct: 696 ----IRDR-------ATNPPDIKPT-ITLCLEVEDTGPGISPSDLESIFDAFMQTNRGR- 742
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT-DEED 680
H G GLGL I + LM G+I + + RG F V+L E P++ D E+
Sbjct: 743 -HDRGTGLGLSISREFARLMSGDITV--RSTLNRGSTFTCQVVL------ELPESLDLEE 793
Query: 681 P 681
P
Sbjct: 794 P 794
Score = 56.6 bits (135), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 32/145 (22%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVC--RNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
+ LV ED ++ +L +G F+VC NG EA D DL I
Sbjct: 811 RILVAEDVPENRQLLVTLLESVG--FDVCAVENGAEAIDRWQTWHPDL-----------I 857
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVH-----------------IPIIALTAHAMAGVA 1064
+MD +MPVM+G+EATR IR +E H IIALTA+A
Sbjct: 858 LMDIQMPVMDGYEATRQIRSQESLVISHESSADNSGQMSQDNRQITRIIALTAYAFEDDR 917
Query: 1065 SKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ G D ++ KP +D L D +
Sbjct: 918 IASLQVGCDDYIAKPFTEDTLFDKI 942
>gi|428211837|ref|YP_007084981.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428000218|gb|AFY81061.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1044
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 142/279 (50%), Gaps = 38/279 (13%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP--GTDLAENLGLIRTCS 440
A AE + +K+ LA SH++R L AIIG E+ E+A+ TDL +L IR
Sbjct: 791 AAYAAETANRSKSMFLANMSHELRTPLNAIIGYSEMLQEEADDFGYTDLIPDLEKIRIAG 850
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
LL ++N ++++SKIEAGKM+L E+FN+ +L+E VV + +++ + ++ CD
Sbjct: 851 NHLLVLINDILDISKIEAGKMDLYLEDFNIDELIENVVSTAQPL-VERNENTLMVECDRD 909
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
LG + D K++QIL NL+SN+ KFT G I++ + F +A+ V K
Sbjct: 910 -LGLMY--ADLTKVRQILLNLLSNAAKFTKNGQITLSVVL----FCPLNMATASPVTGKS 962
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
S + +F + DTG GI +++ +F+ F+Q +
Sbjct: 963 SSWI--------------------------QFAIADTGIGITPEQRQHLFKPFMQGDAST 996
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
G GLGL I Q +M GEI++ + +P RG CF
Sbjct: 997 TREYGGTGLGLAISQRFCQMMGGEISV-ESQP-LRGSCF 1033
>gi|119773209|ref|YP_925949.1| signal transduction histidine kinase-like protein [Shewanella
amazonensis SB2B]
gi|119765709|gb|ABL98279.1| Hpt sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
Length = 1021
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 135/288 (46%), Gaps = 52/288 (18%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E+AE S K LA SH++R + ++G++ L E L + T +
Sbjct: 384 VEAREKAEAASRIKADFLACMSHEIRTPMNGVLGILSLL-EKTELSIQQKHYLDVASTSA 442
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL +LN +++ SKIE+GK E+ E F+L QLL++ + + KG+ ++LD
Sbjct: 443 ESLLTLLNDILDFSKIESGKFEIDEVPFDLIQLLDDFIQPFAIRAEAKGLKLLLD----- 497
Query: 501 VLGSCH---VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ H VRGD +++Q+L NLVSN++KFT G I+VR
Sbjct: 498 -ISGIHLRWVRGDPGRIRQVLVNLVSNAIKFTEVGWIAVR-------------------- 536
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+ + E N + ++DTG GI KDKQ +F F Q
Sbjct: 537 --------------------VQASEDTANGVSLMVSIEDTGIGISKDKQEVLFSPFTQAD 576
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
T H G GLGL I + + LM G+I + E + G F+F++ L
Sbjct: 577 STTTRHFGGTGLGLSIAKRLCELMDGDIRVISAE--DAGSTFKFHLRL 622
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 75/132 (56%), Gaps = 13/132 (9%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
+ + L+VED+ + V +L LG K EV NG +A L+ L+ YD
Sbjct: 771 DSAQILLVEDNKVNQMVALGMLRNLGLKHVEVVTNGLQA-------LAALQHR----QYD 819
Query: 1020 YIMMDCEMPVMNGWEATRLIRK-EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
I+MDC MP M+G++AT+ IRK E Q I I+A+TA+AM G ++AGM+ ++ K
Sbjct: 820 LILMDCLMPEMDGYQATQAIRKGEAGQKHKDIKIVAMTANAMKGDRETCLEAGMNDYIAK 879
Query: 1079 PLQKDKLLDVVK 1090
PL + ++ V++
Sbjct: 880 PLHQAEVARVLE 891
>gi|334342915|ref|YP_004555519.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
L-1]
gi|334103590|gb|AEG51013.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
L-1]
Length = 766
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 146/297 (49%), Gaps = 51/297 (17%)
Query: 352 GVISLGLFIILIAKAA-KREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLA 410
G++ + L + L+ A+ + + F+C +++ + A AE S KT LA SH++R +
Sbjct: 254 GLVWINLTVSLVRDASGEPDFFVC--VVEDIGARRSAEMASAAKTGFLANMSHEIRTPMN 311
Query: 411 AIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNL 470
I+G +L P D + +I + ++ +LN ++++SK+EAG+ME+ E F+L
Sbjct: 312 GILGFADLLLGAGLP-PDQHRQVKMIADSGRAMMRLLNDILDLSKVEAGQMEIAREPFDL 370
Query: 471 AQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTS 530
L+ +++ +KG+D++ D D V GD ++L+Q++ NL+ N++KFTS
Sbjct: 371 VHALDACLNLVRVGAEQKGIDLIRDIADDL---PRTVTGDGLRLRQVVLNLLGNAVKFTS 427
Query: 531 EGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQF 590
EGH+++R + ++R VI
Sbjct: 428 EGHVALRVHLD---------GADRLVIV-------------------------------- 446
Query: 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
V+D+G GI ++Q +IFE+FVQ G GLGL I +V LM GE+ +
Sbjct: 447 ---VEDSGPGIAPERQAAIFEKFVQADAGTAARFGGSGLGLSISAQLVTLMNGELTL 500
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 68/127 (53%), Gaps = 9/127 (7%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L+ + LV ED + ++ A+L ++G + +G +A V LR G+ PYD
Sbjct: 537 LHDLRVLVAEDHDVNQELVRAMLERIGCSATIVEDGAQAVAAV------LRARGEGAPYD 590
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
++MD +MPVM G +A R IR + H +PI+ALTA+A + AGM HL K
Sbjct: 591 IMLMDMQMPVMGGLDAARAIRA--QGVSAHELPILALTANAFGEDVHASLAAGMQAHLAK 648
Query: 1079 PLQKDKL 1085
PLQ +L
Sbjct: 649 PLQLAEL 655
>gi|116624414|ref|YP_826570.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
gi|116227576|gb|ABJ86285.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
Length = 1349
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 158/321 (49%), Gaps = 49/321 (15%)
Query: 347 LMFIAGVISLG-LFIILIAKAAKREMFLCAALIKQMN-ATEQAERKSMNKTFALAKASHD 404
L F+A ++S+G II++A A + +LI ++N A EQAE S +KT LA SH+
Sbjct: 736 LGFLA-LLSVGSCAIIVLACVAAIQYRRRGSLILELNRAKEQAEAASRHKTEFLANMSHE 794
Query: 405 VRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELV 464
+R + +IG+ L D T+ + G +R + LL ++N +++ SK+EAGK+ +
Sbjct: 795 IRTPMNGVIGMTGLLL-DTELTTEQRDYAGTVRRSGESLLTLINDILDFSKVEAGKLAIE 853
Query: 465 EEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSN 524
F+L +EEV +M + +D+VL G+ H GD +++Q++ NLV N
Sbjct: 854 ASAFDLRSTIEEVDEMLAPKIENRKLDLVLQYPVGA---PRHFVGDAGRIRQVVTNLVGN 910
Query: 525 SMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERN 584
++KFT EG I + C S+ D+ A+ V
Sbjct: 911 AIKFTGEGSIVIEVV--------------------CESQ---------DEARAVMRV--- 938
Query: 585 PNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGE 644
+ DTG GIP +K S+FE+F Q+ + G GLGL I + +V LM G
Sbjct: 939 --------AIHDTGPGIPSEKIGSLFEKFSQLDGSTTRKYGGTGLGLAISKQLVSLMGGS 990
Query: 645 IAIADKEPGERGVCFRFNVLL 665
+A++ + GE G F F + L
Sbjct: 991 MAVSSRL-GE-GSTFSFTLPL 1009
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 12/127 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV ED+ + KV++ +L KLG + +V +G+EA L L +PYD I M
Sbjct: 1185 RVLVAEDNVVNQKVSARMLDKLGIRADVAADGREAV-----ALFGL------VPYDLIFM 1233
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
DC+MP M+G+ ATR IR+ E +PI A+TA + G + AGMD H+ KP++ +
Sbjct: 1234 DCQMPEMDGYAATREIRRREGP-GRRVPIAAMTAEVLGGCRELCLAAGMDDHIPKPVKME 1292
Query: 1084 KLLDVVK 1090
L + ++
Sbjct: 1293 VLFETLR 1299
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL-PY 1018
L G + L+V+D+ I +V + G + G+EA L LR A PY
Sbjct: 1025 LRGLRALIVDDNEINRRVLHEQIIGWGMRNGSFAAGEEA-------LVALRAAHAAGDPY 1077
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
+ ++D MP M+G E R I+ ++E + ++ LT+ A + +D L K
Sbjct: 1078 HFAILDYRMPGMDGVEVARAIKADDELRETV--VVLLTSVGQWSEARQKESGIVDASLVK 1135
Query: 1079 PLQKDKLLDVVKS 1091
P+++ +LL+++ S
Sbjct: 1136 PVRQSQLLNILSS 1148
>gi|298530456|ref|ZP_07017858.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509830|gb|EFI33734.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1033
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 139/284 (48%), Gaps = 52/284 (18%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTC--- 439
A EQAE S K+ LA SH++R +A I+G +E+ + TD E+ L++
Sbjct: 512 AKEQAEAASKAKSEFLANMSHEIRTPMAGIMGALEMV----SARTDDEESRRLMKMTLES 567
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
++ L I+N ++++SK+EAGK+E+ +EF+ L + V+D+Y +K +++ LD G
Sbjct: 568 ARSLQQIINDILDLSKVEAGKLEIEHQEFDPQSLFKRVMDLYSIQAGEKNIELQLDTAPG 627
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
C GD+ +L+Q+L NLVSN++KFTS+G + +R
Sbjct: 628 IPRRLC---GDQYRLEQVLRNLVSNAVKFTSQGRVILR---------------------- 662
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
+ V+ + FEV+DTG GI +D +F+ F Q T
Sbjct: 663 ------------------VRPVQAASGKARLNFEVEDTGVGIKEDFLPRLFDSFTQADST 704
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+G GLGL I +V +M G+I A PG G F F++
Sbjct: 705 YGKKHQGTGLGLAISNRLVQMMGGDIQ-AQSIPGA-GSIFSFSL 746
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 21/139 (15%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K LV ED + VL + G + + NG EA G+ +D ++M
Sbjct: 774 KILVAEDVKLNQDYIRFVLKQKGHQAVIAGNGLEAVQAFVP--------GQ---FDLVLM 822
Query: 1024 DCEMPVMNGWEATRLIRKEEEQY----DV------HIPIIALTAHAMAGVASKIVDAGMD 1073
D +MP ++G E R IR++EE DV +PIIALTA+AM + + +GMD
Sbjct: 823 DIQMPDIDGLETARRIREKEESSGRTSDVGPRDSGRVPIIALTAYAMPEERQEFLQSGMD 882
Query: 1074 FHLTKPLQKDKLLDVVKSI 1092
+++KP+ + L ++S+
Sbjct: 883 GYVSKPVDPEDLFREIESL 901
>gi|389874760|ref|YP_006374116.1| GAF sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
gi|388531940|gb|AFK57134.1| GAF sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
Length = 749
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 134/285 (47%), Gaps = 51/285 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
NA E AER S K+ LA SH++R L ++G +L D G + + +I + +
Sbjct: 223 NAREAAERASFAKSRFLATMSHELRTPLNGVLGAAQLLLGDPGVGPGPRQRVQMIASAGR 282
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEE-FNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
LLG++N V++ SKIEAGK+EL + +L LL V D+ KG+ ++ D +
Sbjct: 283 HLLGVINDVLDFSKIEAGKLELQPRDGVDLRGLLTVVSDVVAPQATAKGLVLI---TDAA 339
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+R D ++L+Q+L NL+SN++KFT G + +RA
Sbjct: 340 ADLPHAIRADAMRLQQVLLNLLSNAVKFTPHGRVILRAR--------------------- 378
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
R ++G+ FEV D G GIP ++++ +F++F Q+ E A
Sbjct: 379 ------RGEDGW-----------------LCFEVQDDGPGIPPERRHLLFKDFSQLDEAA 415
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + M G + + D RG FRF V L
Sbjct: 416 -SATAGTGLGLAISARLAAAMGGRLELDDSV--TRGALFRFEVAL 457
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 11/127 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV +D + +V +A+L +LG E +G EA L+ + G D ++M
Sbjct: 490 RVLVADDVEMNREVLAAMLKRLGCIVEKAEDGAEA-------LAIAARGG----IDLVLM 538
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVMNG EA R IR + +PI+ALTA+A + +AGM+ ++ KP+Q
Sbjct: 539 DMRMPVMNGLEAARAIRGLTDPTLAGVPIVALTANAFDSAMEQCREAGMNDYMAKPVQLS 598
Query: 1084 KLLDVVK 1090
+L ++++
Sbjct: 599 ELAEMLQ 605
>gi|162458665|ref|NP_001105857.1| histidine kinase [Zea mays]
gi|89242031|dbj|BAE80686.1| histidine kinase [Zea mays]
Length = 975
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 154/333 (46%), Gaps = 46/333 (13%)
Query: 356 LGLFIIL------IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASL 409
LG F+I IA A R + K QAE + K+ LA SH++R +
Sbjct: 317 LGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATVSHEIRTPM 376
Query: 410 AAIIGLVELCHEDANPGTDLA----ENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVE 465
++G++++ GTDL + + C + L+ ++N V++ +KIEAGK+EL
Sbjct: 377 NGVLGMLDMLL-----GTDLTMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEA 431
Query: 466 EEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNS 525
F+L L+++V+ ++ +K +++ + CD V GD + +QIL NLV N+
Sbjct: 432 VPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNV---PKDVLGDPWRFRQILTNLVGNA 488
Query: 526 MKFTSEGHISVRAAVKKKS-------------FKQDIIASNRNVISKCLS---------- 562
+KFT GH+ VR + S K + S N LS
Sbjct: 489 VKFTERGHVFVRVCLADNSNMEAGQVLNGAMNGKDGRVDSTTNGAFNTLSGFEAADRRNS 548
Query: 563 ----KLFFRNKEG-FDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
K+ +KE DDL+ +S + + + + ++DTG GIP Q+ +F F+Q
Sbjct: 549 WQYFKMLLSDKESLLDDLEGTNSDQSDSDHVTLAISIEDTGVGIPLQAQDRVFTPFMQAD 608
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
+ + G G+GL I + + LM G+I+ +
Sbjct: 609 SSTSRNYGGTGIGLSISKCLAELMGGQISFVSR 641
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 35/154 (22%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHV----CKILSDLRKEGKA 1015
L GK LVV+D+ + L+V +A L K GA +GK+A + C
Sbjct: 827 LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHC------------ 874
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQY-----------------DVHIPIIALTAH 1058
+D MD +MP M+G+EATR IR+ E + + H+P++A+TA
Sbjct: 875 --FDACFMDVQMPEMDGFEATRQIRQTEMRVNEERKNKLVLIEGSTFVEYHLPVLAMTAD 932
Query: 1059 AMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
+ K + +GMD +++KP +++L V +
Sbjct: 933 VIQATYEKCIKSGMDGYVSKPFDEEQLYQAVSRL 966
>gi|428215820|ref|YP_007088964.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004201|gb|AFY85044.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1860
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 136/289 (47%), Gaps = 33/289 (11%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R + A+IG+ L D D E + IRT LL I+N +++
Sbjct: 1155 KSEFLATMSHEIRTPMNAVIGMTGLLL-DTPLNADQREFVETIRTSGDGLLTIINDILDF 1213
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIE+GKM+L E FNL +EE +D+ +K +++ + G + GD +
Sbjct: 1214 SKIESGKMDLEEHPFNLRTCIEECLDLVASKAAEKQLELAYLLAPQTPEG---IIGDVTR 1270
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
L+QIL NL+SN++KFT EG V +F QD N + EG
Sbjct: 1271 LRQILVNLLSNAVKFTQEGETIVAV---NGTFVQDAQFGNPMATA----------TEG-- 1315
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
+ Q F V DTG GIP D+ + +F+ F QV + G GLGL I
Sbjct: 1316 ------------GVYQIHFSVKDTGVGIPPDRMDRLFKSFSQVDSSTTRKYGGTGLGLAI 1363
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPR 682
+ + LM G + + + + G G F F + TA E ++E P+
Sbjct: 1364 AKRLSELMGGTMWV-ESQVG-VGSTFHFTIQATATSEFASATPEDEVPQ 1410
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 19/135 (14%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
S++PL K L+ ED+ + KV +L ++G + +V NG EA ++ L ++
Sbjct: 1560 SDRPL---KILLAEDNVVNQKVALRILERMGYRADVASNGLEA-------IAALNRQS-- 1607
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP-----IIALTAHAMAGVASKIVDA 1070
YD I+MD +MP M+G EATR I KE P IIA+TA+AM G + A
Sbjct: 1608 --YDVILMDVQMPEMDGLEATRHICKEWTLRRDISPMGRPWIIAMTANAMQGDREICLQA 1665
Query: 1071 GMDFHLTKPLQKDKL 1085
GMD +++KP++ + L
Sbjct: 1666 GMDNYISKPIRMEAL 1680
>gi|413923913|gb|AFW63845.1| putative histidine kinase family protein [Zea mays]
Length = 975
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 154/333 (46%), Gaps = 46/333 (13%)
Query: 356 LGLFIIL------IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASL 409
LG F+I IA A R + K QAE + K+ LA SH++R +
Sbjct: 317 LGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATVSHEIRTPM 376
Query: 410 AAIIGLVELCHEDANPGTDLA----ENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVE 465
++G++++ GTDL + + C + L+ ++N V++ +KIEAGK+EL
Sbjct: 377 NGVLGMLDMLL-----GTDLTMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEA 431
Query: 466 EEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNS 525
F+L L+++V+ ++ +K +++ + CD V GD + +QIL NLV N+
Sbjct: 432 VPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNV---PKDVLGDPWRFRQILTNLVGNA 488
Query: 526 MKFTSEGHISVRAAVKKKS-------------FKQDIIASNRNVISKCLS---------- 562
+KFT GH+ VR + S K + S N LS
Sbjct: 489 VKFTERGHVFVRVCLADNSNMEAGQVLNGAMNGKDGRVDSTTNGAFNTLSGFEAADRRNS 548
Query: 563 ----KLFFRNKEG-FDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
K+ +KE DDL+ +S + + + + ++DTG GIP Q+ +F F+Q
Sbjct: 549 WQYFKMLLSDKESLLDDLEGTNSDQSDSDHVTLAISIEDTGVGIPLQAQDRVFTPFMQAD 608
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
+ + G G+GL I + + LM G+I+ +
Sbjct: 609 SSTSRNYGGTGIGLSISKCLAELMGGQISFVSR 641
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 27/150 (18%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK LVV+D+ + L+V +A L K GA +GK+A +S L+ +D
Sbjct: 827 LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDA-------ISLLQPPH---CFD 876
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQY-----------------DVHIPIIALTAHAMAG 1062
MD +MP M+G+EATR IR+ E + + H+P++A+TA +
Sbjct: 877 ACFMDVQMPEMDGFEATRQIRQTEMRVNEERKNKLVLIEGSTFVEYHLPVLAMTADVIQA 936
Query: 1063 VASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
K + +GMD +++KP +++L V +
Sbjct: 937 TYEKCIKSGMDGYVSKPFDEEQLYQAVSRL 966
>gi|269960101|ref|ZP_06174478.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269835400|gb|EEZ89482.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 639
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 143/288 (49%), Gaps = 46/288 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++AE + K+ LA SH++R + IIG+ L D + + +I + S
Sbjct: 233 ARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLLG-DTKLDEQQKDFVSIINSSSNS 291
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
L+ I++ +++ SKIEAGK+EL +NL LL EV ++ +KG+ +V CD
Sbjct: 292 LMVIIDDILDFSKIEAGKIELETATYNLLDLLHEVGRLHTVKAQQKGLQLV---CDIDAQ 348
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
V GD +LKQ+L NL+SN++KFT GH+ + ++S+
Sbjct: 349 LPSEVEGDVGRLKQVLSNLLSNAVKFTERGHVKL-------------------MVSQV-- 387
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
N+E DD+ ++H F V D+G GI K+ Q ++FE+F Q +
Sbjct: 388 -----NRE--DDIASVH------------FRVVDSGIGIAKENQQAVFEKFQQADGSTTR 428
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
G GLGL I S+V +M GEI + EPG G CF F + L V +
Sbjct: 429 KYGGTGLGLAICSSLVEVMGGEIRLT-SEPG-LGSCFEFTIPLNIVSD 474
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 72/125 (57%), Gaps = 13/125 (10%)
Query: 962 GKKF-LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
GK + LVVED A+ KV +L KLG + V +G+EA ++ + +D
Sbjct: 505 GKPWILVVEDTAVNQKVVRIMLEKLGMQVNVAEHGEEAL-----------QQCQEHQFDL 553
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MDC+MPVM+G+ AT IRK E + +PIIAL+A+ + + D GM+ + KP+
Sbjct: 554 ILMDCQMPVMDGFIATENIRKMGE-WGQQVPIIALSANVIKEDQQRCFDVGMNEFVAKPV 612
Query: 1081 QKDKL 1085
K++L
Sbjct: 613 TKERL 617
>gi|395444493|ref|YP_006384746.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida ND6]
gi|388558490|gb|AFK67631.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida ND6]
Length = 1212
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 145/308 (47%), Gaps = 53/308 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A +QA+ + K+ LA SH++R + A+IG++EL + A+ G L L +K
Sbjct: 701 QAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGRVDRSALELAHHSAK 760
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG--VDVVLDPCDG 499
DLLG++ ++++ +IE+G + L E +LA L+E V ++ +KG ++V + P
Sbjct: 761 DLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARIFDGQARQKGLALEVQIAPA-- 818
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
CHV D ++ KQ+L NLVSN++KFT G + +
Sbjct: 819 ---ARCHVLLDPLRFKQVLSNLVSNAIKFTEHGQVRI----------------------- 852
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
C+S L DD + +V E EV D+G GI D +F F+Q
Sbjct: 853 CVSLL--------DDGTSTPAV--------LELEVRDSGIGIHPDDLQRLFNPFIQANPH 896
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT--- 676
+ G + G GLGL I +++ +M G +++ E + G R + L V E+P
Sbjct: 897 SQGARAGTGLGLAICRNLCEMMGGSLSMKSLE--DVGTQVRLKMPLQRVDGAEQPKPLPE 954
Query: 677 --DEEDPR 682
D DPR
Sbjct: 955 QLDVPDPR 962
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 22/139 (15%)
Query: 952 DGKCSEKPLNGK--------KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVC 1003
DG KPL + LV++D L++ + LG LG + R+G+E
Sbjct: 944 DGAEQPKPLPEQLDVPDPRLNVLVIDDHPANLQLMAQQLGYLGLEHASARDGREGLATW- 1002
Query: 1004 KILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP--IIALTAHAMA 1061
+EG +D +++DC MP MNG++ +R EE++ P I+ TA+A
Sbjct: 1003 -------REGD---FDVLVLDCNMPHMNGYQLATAVRA-EERHGKRPPCTILGYTANAQP 1051
Query: 1062 GVASKIVDAGMDFHLTKPL 1080
V K + AGMD L KP+
Sbjct: 1052 EVRRKCLTAGMDDCLLKPI 1070
>gi|94265110|ref|ZP_01288875.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93454397|gb|EAT04695.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 699
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 143/305 (46%), Gaps = 47/305 (15%)
Query: 361 ILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCH 420
+ + + +RE + + L+ A EQAE K LA SH++R L A++G+ +L
Sbjct: 185 VFVFRDTRREREIQSHLLA---AKEQAEGALRAKGEFLAGMSHEIRTPLTAVLGMADLL- 240
Query: 421 EDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDM 480
+ + + + R ++LL ++N ++++SKIEAG++E+ EF+L QL+ + ++
Sbjct: 241 DKTRLDSQQRQYVAASRAAGENLLDLINGILDLSKIEAGRLEVESVEFDLDQLVRQTCEI 300
Query: 481 YYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAV 540
++G++ V S G C V GD +++Q+L NL+ N++KFT EG + V
Sbjct: 301 MNLRARQQGLEFV---HHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTEEGRVMV---- 353
Query: 541 KKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKG 600
+L L + P F V DTG G
Sbjct: 354 ---------------------------------ELACLPAAPPYPGPF-FRCTVSDTGIG 379
Query: 601 IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
IP KQ IFE+F Q + G GLGL I + +V +M G+I++ +E G G F
Sbjct: 380 IPAAKQEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQISLVSREGG--GSTFT 437
Query: 661 FNVLL 665
+ L
Sbjct: 438 MEIPL 442
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 12/130 (9%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G L+ ED + A L G + E+ R+G EA V K +A Y +
Sbjct: 472 GMDILLAEDSPDNRLLFQAYLQDTGHRLEMARDGAEA---VAKY--------RAGHYHLV 520
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYD-VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+MD +MPV++G+EATR IR+ E Q+ PI+ALTAHA ++ + G D HL KP+
Sbjct: 521 LMDMQMPVVDGYEATRQIREWEWQHGRPRTPILALTAHAFQEDIARSREVGCDGHLVKPI 580
Query: 1081 QKDKLLDVVK 1090
+ + L V+
Sbjct: 581 KMNDFLRAVR 590
>gi|334119010|ref|ZP_08493097.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333458481|gb|EGK87098.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1031
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 162/325 (49%), Gaps = 41/325 (12%)
Query: 362 LIAKAAKREMFLCAALIKQMNATEQA-ERKSMN---KTFALAKASHDVRASLAAIIGLVE 417
L A A R + + A L A E A ER ++ K+ LA SH++R L AI+G +
Sbjct: 506 LEAAAEMRHILMLAVLEFSQAALEHAAERAAIANRAKSQFLANMSHELRTPLNAILGFTQ 565
Query: 418 LCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEV 477
L + + E+LG+I + LL +++ V++MS+IEAG++ L FNL +LL +
Sbjct: 566 LMNRSPYIPEEFQEHLGIITRSGEHLLTLIDDVLQMSRIEAGQLVLSRSCFNLHRLLGSI 625
Query: 478 VDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVR 537
+M+ +KG+ + + D +V +V GD+ KL+QIL NL+ N++KFT+ G I +R
Sbjct: 626 NEMFSIKAPEKGLHLSSE-WDATV--PRYVCGDQAKLRQILINLLGNAIKFTTAGKIVLR 682
Query: 538 AAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDT 597
++F D ++S N R++ A + + P + EV+DT
Sbjct: 683 G----RAFSSDDMSSGTN-----------RDR-------ATNPPDIKPT-ITLCLEVEDT 719
Query: 598 GKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGV 657
G GI SIF+ F Q H G GLGL I + LM G+I + + ++G
Sbjct: 720 GSGISSSDLGSIFDAFRQTNRGR--HDRGTGLGLSISREFARLMGGDITV--RSTLDQGS 775
Query: 658 CFRFNVLLTAVCERERPDT-DEEDP 681
F V+L E P++ D E+P
Sbjct: 776 TFTCQVVL------ELPESVDLEEP 794
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 32/145 (22%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVC--RNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
+ LVVED ++ +L +G F+VC NG EA DL I
Sbjct: 811 RILVVEDVPENRQLLVTLLESVG--FDVCAVENGVEAIARWQTWHPDL-----------I 857
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVH-----------------IPIIALTAHAMAGVA 1064
+MD +MPVM+G+EATR IR ++ H IIALTA+A
Sbjct: 858 LMDIQMPVMDGYEATRQIRAQQSLVMSHGSSADNSGQMSQDKRQITRIIALTAYAFEDDR 917
Query: 1065 SKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ G D ++ KP +D L D +
Sbjct: 918 IASLQVGCDDYIAKPFTEDTLFDKI 942
>gi|256828469|ref|YP_003157197.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
gi|256577645|gb|ACU88781.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
Length = 627
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 141/301 (46%), Gaps = 44/301 (14%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A EQAE + KT LA SH++R + I+G++EL ++++P + + L S+
Sbjct: 241 QAKEQAESATQAKTQFLANMSHEIRTPMNGIMGMLELAMDNSDPAV-MQKYLQTAMRSSR 299
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL +LN ++++S++EA +M +VEE FN+ +L+EE+ D + V + +G+ + D +V
Sbjct: 300 SLLRLLNDILDLSRLEASRMPVVEEPFNIRELMEELTDSFQAVVLDRGL-ALRSTVDENV 358
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+ GD V+++QIL NL+ N++KFT G + +R + S ++R I
Sbjct: 359 --PPFLLGDSVRIRQILTNLIGNAVKFTLRGKVEIRVS----SLTPARSGAHRIYI---- 408
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
EV+DTG GIP Q +F F Q T
Sbjct: 409 -------------------------------EVEDTGVGIPDQAQTGLFAPFAQADSTQT 437
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGER-GVCFRFNVLLTAVCERERPDTDEED 680
EG GLGL I Q +V L+ G +A G VC + E P E +
Sbjct: 438 RKFEGSGLGLSITQQLVVLLGGSLAFESSPHGSLFAVCLPLHPATQQPPRHEPPIQSETE 497
Query: 681 P 681
P
Sbjct: 498 P 498
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 11/137 (8%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
+E P++ K LV ED+ + + L + + + G+E +L +R E
Sbjct: 496 TEPPMSALKVLVAEDNPVNSLIAMKFLEAMNHEPTLATTGQE-------VLEFMRSES-- 546
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075
+D ++MD +MP M+G EATR+IR E PI+A+TAHA + + + + AGM+ H
Sbjct: 547 --FDLVLMDIQMPEMDGLEATRIIRSWPESEGGKTPIVAMTAHAFSSDSDRFMAAGMNGH 604
Query: 1076 LTKPLQKDKLLDVVKSI 1092
L KP+ + L ++S+
Sbjct: 605 LPKPISRRDLERFLRSL 621
>gi|253699829|ref|YP_003021018.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
gi|251774679|gb|ACT17260.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
Length = 962
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 134/279 (48%), Gaps = 53/279 (18%)
Query: 391 SMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTC---SKDLLGIL 447
S K+ LA SH++R + ++G+++L A T + IRT + LL IL
Sbjct: 568 SRTKSQFLANMSHELRTPMTGVLGMLDL----ALQSTSELQQSDYIRTAYRSGRSLLQIL 623
Query: 448 NSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHV 507
N ++++SK+EAGK L ++ F+L + E D+ +KG+++ LD HV
Sbjct: 624 NDILDLSKVEAGKFSLDQKPFSLRSCVTEAADIAAPEAKRKGIELELDLAQDL---PWHV 680
Query: 508 RGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFR 567
GD+V+L+Q+L NLV N++KFT G ++V+ V K+ + +++
Sbjct: 681 VGDQVRLRQVLTNLVGNAVKFTERGRVTVQVEVADKTAEAELL----------------- 723
Query: 568 NKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGL 627
F V DTG GIP+DK++ +F+ F QV ++ + G
Sbjct: 724 ----------------------LRFRVSDTGIGIPQDKRHLLFQAFSQVDDSNTRNYGGT 761
Query: 628 GLGLGIVQSMVHLMKGEIAIADKEPGER-GVCFRFNVLL 665
GLGL I + +V M GEI E GE G F F L
Sbjct: 762 GLGLAISKEIVQRMGGEIGF---ESGEGVGSTFTFTARL 797
Score = 89.7 bits (221), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 80/130 (61%), Gaps = 11/130 (8%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
+G + L+ EDDA + +V +A+L KL + +G+ + ++G+ YD
Sbjct: 838 SGLRLLIAEDDATIRQVLAAMLQKLQFVVDFAEDGETVVEKW--------RQGE---YDL 886
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MD +MP ++G++ATR IR++E++ IPIIA+TAHAM + +DAGMD +++KP+
Sbjct: 887 ILMDVQMPRLDGFQATRAIREQEQEQGARIPIIAMTAHAMKEDQRRCLDAGMDDYISKPI 946
Query: 1081 QKDKLLDVVK 1090
+ ++ VK
Sbjct: 947 NFKECIEKVK 956
>gi|148548845|ref|YP_001268947.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1]
gi|148512903|gb|ABQ79763.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
Length = 1210
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 145/308 (47%), Gaps = 53/308 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A +QA+ + K+ LA SH++R + A+IG++EL + A+ G L L +K
Sbjct: 699 QAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGRVDRSALELAHHSAK 758
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG--VDVVLDPCDG 499
DLLG++ ++++ +IE+G + L E +LA L+E V ++ +KG ++V + P
Sbjct: 759 DLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARIFDGQARQKGLALEVQIAPA-- 816
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
CHV D ++ KQ+L NLVSN++KFT G + +
Sbjct: 817 ---ARCHVLLDPLRFKQVLSNLVSNAIKFTEHGQVRI----------------------- 850
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
C+S L DD + +V E EV D+G GI D +F F+Q
Sbjct: 851 CVSLL--------DDGTSTPAV--------LELEVRDSGIGIHPDDLQRLFNPFIQANPH 894
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT--- 676
+ G + G GLGL I +++ +M G +++ E + G R + L V E+P
Sbjct: 895 SQGARAGTGLGLAICRNLCEMMGGSLSMKSLE--DVGTQVRLKMPLQRVDGAEQPKPLPE 952
Query: 677 --DEEDPR 682
D DPR
Sbjct: 953 QLDVPDPR 960
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 22/139 (15%)
Query: 952 DGKCSEKPLNGK--------KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVC 1003
DG KPL + LV++D L++ + LG LG + R+G+E
Sbjct: 942 DGAEQPKPLPEQLDVPDPRLNVLVIDDHPANLQLMAQQLGYLGLEHASARDGREGLATW- 1000
Query: 1004 KILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP--IIALTAHAMA 1061
+EG +D +++DC MP MNG++ +R EE++ P I+ TA+A
Sbjct: 1001 -------REGD---FDVLVLDCNMPHMNGYQLATAVRA-EERHGKRPPCTILGYTANAQP 1049
Query: 1062 GVASKIVDAGMDFHLTKPL 1080
V K + AGMD L KP+
Sbjct: 1050 EVRRKCLTAGMDDCLLKPI 1068
>gi|254492527|ref|ZP_05105699.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxidans DMS010]
gi|224462419|gb|EEF78696.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxydans DMS010]
Length = 929
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 152/324 (46%), Gaps = 58/324 (17%)
Query: 356 LGLF-IILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIG 414
LG F I AK A++E+ + A EQAE+ ++ K+ LA SH++R L +IG
Sbjct: 263 LGTFEDITQAKIAEQELIV---------AKEQAEQANIAKSQFLANMSHELRTPLNGVIG 313
Query: 415 LVELCHEDANPGTDLAENL-GLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473
+ L A NL + + ++ L G+LN V+++SKIE+GK+EL +L +L
Sbjct: 314 TLNLLA--ATSLNARQSNLVNISKHSAESLFGLLNDVLDLSKIESGKLELEYHNEDLDEL 371
Query: 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGH 533
L EV +KG++++ C + SC + DR++L+QIL NL+ N++KFT +G
Sbjct: 372 LAEVARGMAGRAEEKGLELL---CPAHFMSSCVAKVDRLRLRQILNNLIGNALKFTEKGS 428
Query: 534 ISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFE 593
I+V V KK+ + + F
Sbjct: 429 ITVDMTVIKKTMPEATL----------------------------------------RFS 448
Query: 594 VDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
+ DTG GI + Q +FE F Q+ ++ Q G GLGL I + +V LM G I ++
Sbjct: 449 ISDTGVGISEHDQALLFERFKQLDGSSTRPQAGSGLGLAICRQLVELMGGRIGVSSTLG- 507
Query: 654 ERGVCFRFNVLLTAVCERERPDTD 677
+G F F + V + +P D
Sbjct: 508 -QGSTFWFEITTELVNRKGQPHQD 530
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 922 PLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAV 981
PL + + F A G LQQ +K L+VED++ + V +
Sbjct: 638 PLMQSEVFNALVGLRNDMPTKQLQQPIK----PVENAQFKDRKILLVEDNSTNIIVAKGL 693
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
+ G EV NG+ A + ILS R +D I MDC+MPVM+G+E TRLIR
Sbjct: 694 IQMYGPTVEVAENGELALN----ILSKQR-------FDLIFMDCQMPVMDGYECTRLIRS 742
Query: 1042 EEEQYDVH-IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
EE H IPIIALTA+AM G + AGMD +++KP+ D + ++K
Sbjct: 743 EEASVINHRIPIIALTANAMRGDREACLAAGMDDYISKPVDADTIHQMLK 792
>gi|427733873|ref|YP_007053417.1| PAS domain-containing protein [Rivularia sp. PCC 7116]
gi|427368914|gb|AFY52870.1| PAS domain S-box [Rivularia sp. PCC 7116]
Length = 1486
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 145/290 (50%), Gaps = 34/290 (11%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A + AE + K+ LA+ +H++R L AI+G ++ + N T + L I S
Sbjct: 989 IRAKQTAEAANHAKSEFLARMTHELRTPLNAILGFTQILNRQRNLQTQQKQYLDTILRSS 1048
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCD 498
LLG++N ++++SKIEAG EL F+L +LL+ + M Y K + LDP
Sbjct: 1049 HHLLGLINDILDISKIEAGMAELHITSFDLYRLLDGIESMLYLKAKSKQLQFTFELDPEI 1108
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
+++ D KL+QIL N++ N++KFT G + +R ++ I SN+
Sbjct: 1109 PQ-----YIQTDESKLRQILINILGNAIKFTDSGKVELRLTALASQEEKSIQESNQ---- 1159
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNP----NLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
+K +N E NP + L +F++ D+GKGI ++ SIF+ FV
Sbjct: 1160 ---TKTQEQNTE-------------NPLLSSSTLSLQFQITDSGKGIATEELKSIFDAFV 1203
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
Q T Q+G GLGL I + V LM G+I I K GE G FN++
Sbjct: 1204 QSNPTYQA-QDGTGLGLAICKRFVQLMGGDIKIHSK-LGE-GTTVEFNII 1250
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 13/131 (9%)
Query: 961 NGKKF--LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
N K+F LVVED+ ++ +L +G + NG+EA + L ++ +
Sbjct: 1274 NQKEFTILVVEDNWDNRQLLIELLTPIGFQLVEANNGQEAIE--------LWEQDEP--- 1322
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
+ I+MD MPV++G++AT+ IR++E+ HIPIIALTA A I+ G D + K
Sbjct: 1323 NLILMDMRMPVIDGYQATKQIREKEKNTQHHIPIIALTATAFNENRELILMIGCDDFIPK 1382
Query: 1079 PLQKDKLLDVV 1089
P Q++ LL+ +
Sbjct: 1383 PFQEEVLLEKI 1393
>gi|443474503|ref|ZP_21064478.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
gi|443020761|gb|ELS34682.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
Length = 1277
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 144/293 (49%), Gaps = 26/293 (8%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I+ A E+A+ + K+ LA SH++R L I+G V++ D N E + +I+
Sbjct: 772 IELSQAKEEADSANKAKSEFLANMSHELRTPLNGILGYVQILQRDRNLTPKQIEGINVIK 831
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
CS LL ++ ++++SKIEA KMEL+E +F+ L+ VV++ ++KG+ P
Sbjct: 832 QCSNHLLNLIADILDLSKIEAQKMELIETDFHFQNFLQGVVEVCAVRSMQKGITFTYLPS 891
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+G + D +L+Q+L NL+ N++KFT +G + +FK D I+ N+
Sbjct: 892 ANLPIG---IFADDKRLRQVLLNLLGNAIKFTQDGGV---------TFKVDAIS--LNIP 937
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
L+ + +H Q F+++DTG GI ++ IF F Q
Sbjct: 938 YSELTPDGNSDDRERPSFSIMH---------QIRFQIEDTGIGISPEQIEKIFFPFEQAG 988
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
AL + EG GLGL I Q +V +M I + K +G F ++ L A E
Sbjct: 989 -GALVNAEGTGLGLAISQKIVEIMGSTIQV--KSERGKGSIFWIDLNLKAATE 1038
>gi|285018741|ref|YP_003376452.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas albilineans GPE PC73]
gi|283473959|emb|CBA16460.1| putative two-component system sensor-response regulator hybrid
protein [Xanthomonas albilineans GPE PC73]
Length = 1370
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 139/283 (49%), Gaps = 49/283 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP--GTDLAENLGLIRTCS 440
A + AE + +K+ LA SH++R + AI+G++ L P D+ + + +
Sbjct: 627 AIDAAETANQSKSDFLANMSHEIRTPMNAILGMLYLLQNSELPQAAKDMIQKTDI---SA 683
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL I+N +++ SKIE+G+++L E F+L+QLLE + + K V+++++P
Sbjct: 684 RALLDIINDILDFSKIESGRIDLESEPFDLSQLLENIATLMTTAISAKPVEMIVEPLPK- 742
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
G +RGD ++L Q+L NLV N++KFT +G +++ S R S
Sbjct: 743 --GCRWLRGDALRLNQVLVNLVGNAIKFTEQGEVTL---------------SVRAFPSPE 785
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+ K ++ F V DTG GIP++KQ+ IF F+Q +
Sbjct: 786 VGK------------------------IKLMFSVRDTGIGIPREKQSLIFSPFLQADTST 821
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V LM G++ + + RG F F +
Sbjct: 822 SRRYGGSGLGLTISRRLVELMGGQLEV--QSTPNRGSDFYFAI 862
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 11/131 (8%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G + LVV+D I +V +L GA E+ +G++A L LR+E +
Sbjct: 1024 LAGAQLLVVDDSQINCEVAQRILEGEGAIVELAHDGEQA-------LQRLRQEPSR--FQ 1074
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MD +MP M+G+EATR +R + +P+IALTA A + +GM+ + KP
Sbjct: 1075 VILMDVQMPNMDGYEATRQLRADPRL--AALPVIALTAGAYRQQQELALSSGMNGFIAKP 1132
Query: 1080 LQKDKLLDVVK 1090
Q + L+ +++
Sbjct: 1133 FQVENLIAIIR 1143
>gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
DSM 2638]
gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
DSM 2638]
Length = 719
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 153/316 (48%), Gaps = 56/316 (17%)
Query: 352 GVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAA 411
GV+++G I + + E+ LC A + AE S K+ LA SH++R ++A
Sbjct: 315 GVLAVGQDI---TERKRSEVELC-------EARDAAEEASRAKSEFLANMSHEIRTPISA 364
Query: 412 IIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLA 471
IIG+ E+ + N + L ++ ++ LL I+N ++++SKIEA KMEL E+FNL
Sbjct: 365 IIGMSEMTL-NTNLTGEQQGYLVTVKKAAESLLHIINDILDISKIEARKMELRPEDFNLY 423
Query: 472 QLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE 531
++LE+ + + +KG+++ + D + C+ GD +L QI+ NLV N++KFT +
Sbjct: 424 EMLEKQLSVLKVQAEEKGIELRANVSDD--VSRCY-HGDEYRLGQIIINLVGNAIKFTEK 480
Query: 532 GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFE 591
G++ V +D + S E L E
Sbjct: 481 GYVEV-------------------------------------SVDHVGSFEEGAVL---E 500
Query: 592 FEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651
F V DTG GI +DK +FE FVQ+ G GLGL I + +V +M G I + +E
Sbjct: 501 FRVKDTGIGISEDKCEKLFESFVQLNAGYSKRHPGSGLGLAISRQLVEMMGGHITFSSRE 560
Query: 652 PGERGVCFRFNVLLTA 667
G F+F V L +
Sbjct: 561 GW--GSEFKFTVRLKS 574
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 14/126 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+A + L + G + E NG EA D L D + P+D I+M
Sbjct: 599 RILLAEDNATNQLYIAHFLTEQGFEVETAENGLEALD-----LLD-----NSGPFDVILM 648
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G EAT+ IR++ + IPIIALTA+AM G K + GMD + +KP+ D
Sbjct: 649 DVQMPEMDGLEATKKIREQGNE----IPIIALTAYAMEGDREKFLSNGMDAYSSKPVNID 704
Query: 1084 KLLDVV 1089
+L+ ++
Sbjct: 705 ELVQII 710
>gi|375104143|ref|ZP_09750404.1| signal transduction histidine kinase [Burkholderiales bacterium
JOSHI_001]
gi|374664874|gb|EHR69659.1| signal transduction histidine kinase [Burkholderiales bacterium
JOSHI_001]
Length = 959
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 137/293 (46%), Gaps = 51/293 (17%)
Query: 367 AKREMFLCAALIKQMNATEQ-----AERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
A E+ AA I ++NA Q AE + K+ LA SH++R + A+IGL L
Sbjct: 556 AHAELQAQAAEIAELNAELQRRAIDAETANRAKSAFLANMSHEIRTPMNAVIGLTHLLRR 615
Query: 422 DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481
D N AE L ++ ++ LL ++N V+++SK+EAGKM L +F L LL+++ M
Sbjct: 616 D-NQDPVAAERLDKVQDAARHLLAVINDVLDLSKVEAGKMTLEATDFALETLLQQLDSML 674
Query: 482 YHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541
KG+ L+ V H GD +L Q L NL+ N++KFT +G + +R A+
Sbjct: 675 GERARSKGLAFTLEAA--GVPPWLH--GDPTRLTQALLNLLGNAIKFTEQGTVGLRVALL 730
Query: 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGI 601
+ +QD S+L R FEV D+G GI
Sbjct: 731 Q---RQD-------------SQLLLR------------------------FEVHDSGPGI 750
Query: 602 PKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE 654
+ +FE F Q + G GLGL I + + HLM GE + + EPG+
Sbjct: 751 GAGQLPVLFEAFEQADSSTTRRYGGTGLGLAITRHLAHLMGGEAGV-NSEPGQ 802
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 17/128 (13%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV ED+A+ +V +L LG ++ NG+EA D A YD I+M
Sbjct: 840 RALVAEDNAVNREVALELLAALGVPADLAENGREAVDMAA-----------ARAYDLILM 888
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVH--IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
D +MP M+G +ATR IR Q VH PI+A+TA+A A + + AGMD H+ KP++
Sbjct: 889 DMQMPEMDGLQATRAIR----QLAVHARTPIVAMTANAFAEDRAACLQAGMDDHIAKPVE 944
Query: 1082 KDKLLDVV 1089
+L V+
Sbjct: 945 VAELQRVL 952
>gi|374301703|ref|YP_005053342.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
Length = 842
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 133/282 (47%), Gaps = 42/282 (14%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A + AE + K+ LA SH++R + IIGL EL P + + L +++ +
Sbjct: 448 QAKQAAEAANQAKSEFLASMSHEIRTPMNGIIGLTELALMQ-EPKAKIRDYLQMVKQSAN 506
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV--DVVLDPCDG 499
LL I+N ++++SKIEAG++EL +F+L +L+ + + +KG+ +DP
Sbjct: 507 SLLDIINDILDLSKIEAGRVELEHADFDLRDMLDSLFETMRIGAERKGLSFSTAIDPGVP 566
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
++GD +L+QI NL+ N++K+T G +SVR V+ QD A RN
Sbjct: 567 D-----WIKGDEGRLRQIFVNLIGNAIKYTEAGQVSVRVGVEDGRGAQD--AGGRN---- 615
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
P + V DTG GIPKDK IFE F +
Sbjct: 616 ------------------------TPERVCLVASVKDTGGGIPKDKLGRIFEPFDTGARS 651
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
A +G GLGL I + +V LM G I + E G RG F F
Sbjct: 652 A--KYDGTGLGLAITKRLVELMGGRITV-QSELG-RGSTFSF 689
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 74/129 (57%), Gaps = 12/129 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ I + +L LG + ++G++A + ILS R +D ++M
Sbjct: 718 RILLAEDNEINRFLAVELLKGLGHEVTTVQDGRQALE----ILSKER-------FDLVLM 766
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G E TR IR E D H+PI+ALTA+A+ G + + AGMD +L+KP+
Sbjct: 767 DVQMPQMHGDEVTRRIRAGE-AGDPHVPIVALTAYALKGDRERFLAAGMDDYLSKPIDMQ 825
Query: 1084 KLLDVVKSI 1092
+L V+K I
Sbjct: 826 ELERVLKRI 834
>gi|87119494|ref|ZP_01075391.1| two-component system sensory histidine kinase [Marinomonas sp.
MED121]
gi|86164970|gb|EAQ66238.1| two-component system sensory histidine kinase [Marinomonas sp.
MED121]
Length = 910
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 138/286 (48%), Gaps = 54/286 (18%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP--GTDLAENLGLIRTC 439
NA +A + + K+ LAK SH++R L AIIGL E+ HEDA D E L +
Sbjct: 407 NARAEAVKANEVKSEFLAKMSHELRTPLNAIIGLTEMMHEDAIEFDDEDYVEPLDRVLRA 466
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
K LL ++N ++++SKIEAGKMEL E FNL LE+V+ + KK + + D
Sbjct: 467 GKHLLNLINDILDISKIEAGKMELHRENFNLIMALEDVIASIKPLSDKKSIKL---EGDF 523
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
VLG D+ +LKQIL NL+SN++KFT EG +++ A +
Sbjct: 524 EVLGDHF--NDQTRLKQILLNLMSNAVKFTDEGVVTLSARTEND---------------- 565
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
+ V D+G G+ +++ +F++FVQV +
Sbjct: 566 -----------------------------RLNIAVTDSGIGMNEEQCAGLFQDFVQVDSS 596
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
++ +G GLGL I + +M G+I + E G +G F ++ L
Sbjct: 597 SVRKHQGTGLGLAISRKFSRMMGGDIFVT-SEVG-KGSTFTLSIPL 640
>gi|153872278|ref|ZP_02001216.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
gi|152071255|gb|EDN68783.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
Length = 623
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 148/297 (49%), Gaps = 39/297 (13%)
Query: 367 AKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPG 426
++R L I+ ++A + AE + +K+ LA SH++R + AI+G +L D
Sbjct: 322 SERTQRLEQQTIELISAKKVAETANQSKSLFLANMSHELRTPMNAILGFSQLMERDQAIT 381
Query: 427 TDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGI 486
+ NL +I+ + LL ++N V++MSKIE+G+M L E +L Q L+++ DM H+
Sbjct: 382 STQQNNLRIIQRSGEHLLSLINDVLDMSKIESGRMTLETESCDLPQTLKDIADM-IHIRA 440
Query: 487 KKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFK 546
K + D + + +++ D KL+QIL NL+ N++K+T EG +S+R K+
Sbjct: 441 KNKNLLFTWEYDPKL--AHYIKTDVGKLRQILINLLGNAIKYTHEGGLSLRVHSKEM--- 495
Query: 547 QDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQ 606
A S P + EV+D+G GI ++
Sbjct: 496 ------------------------------ATTSASEKPYQHRVYVEVEDSGAGIGPEEV 525
Query: 607 NSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ IF+ FVQV + G EG GLGL I + + +M G+I + E G +G F+F++
Sbjct: 526 DKIFDAFVQVSSSK-GISEGTGLGLSITRRYIQMMGGDIRVMS-ELG-KGSLFKFDI 579
>gi|94267625|ref|ZP_01290943.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
proteobacterium MLMS-1]
gi|93451924|gb|EAT02648.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
proteobacterium MLMS-1]
Length = 483
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 143/305 (46%), Gaps = 47/305 (15%)
Query: 361 ILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCH 420
+ + + +RE + + L+ A EQAE K LA SH++R L A++G+ +L
Sbjct: 185 VFVFRDTRREREIQSHLLA---AKEQAEGALRAKGEFLAGMSHEIRTPLTAVLGMADLL- 240
Query: 421 EDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDM 480
+ + + + R ++LL ++N ++++SKIEAG++E+ EF+L QL+ + ++
Sbjct: 241 DKTRLDSHQRQYVAASRAAGENLLDLINGILDLSKIEAGRLEVESVEFDLDQLVRQTCEI 300
Query: 481 YYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAV 540
++G++ V S G C V GD +++Q+L NL+ N++KFT EG + V
Sbjct: 301 MNLRARQQGLEFVHH---SSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTEEGRVMV---- 353
Query: 541 KKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKG 600
+L L + P F V DTG G
Sbjct: 354 ---------------------------------ELACLPAAPPYPGPF-FRCTVSDTGIG 379
Query: 601 IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
IP KQ IFE+F Q + G GLGL I + +V +M G+I++ +E G G F
Sbjct: 380 IPAAKQEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQISLVSREGG--GSTFT 437
Query: 661 FNVLL 665
+ L
Sbjct: 438 MEIPL 442
>gi|373957347|ref|ZP_09617307.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
gi|373893947|gb|EHQ29844.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
Length = 1437
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 147/286 (51%), Gaps = 45/286 (15%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I++ A +AE+ + K+ LA SH++R + +IG+ L E + T+ E I
Sbjct: 908 IQEQAARLEAEKANQAKSVFLATMSHEIRTPMNGVIGMASLLVE-TDLNTEQREYAETII 966
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
TC L+ ++N +++ SKIE+GKM++ +F+L +EEV+D++ +G+D++ +
Sbjct: 967 TCGDSLVNVINDILDFSKIESGKMDIEHIDFDLRHSIEEVMDLFGPRVALRGIDLIYE-I 1025
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D +V + GD ++LKQ+L NL++N++KFT +G + V+ ++ KQD
Sbjct: 1026 DYNV--PRQIIGDSLRLKQVLINLINNAIKFTEKGEVFVKISL----LKQD--------- 1070
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+ G D F V DTG GIP++K +++F+ F QV
Sbjct: 1071 ----------DHGGID----------------LAFTVTDTGIGIPEEKLSNLFKPFSQVD 1104
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ G GLGL I + +V LM EI A+ G +G F F++
Sbjct: 1105 SSTTRKYGGTGLGLVISERLVKLMGDEIW-AESNFG-KGSVFSFSI 1148
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 14/125 (11%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LV ED+ I K+ +L K+G E+ NG E + + YD I+MD
Sbjct: 1316 LVAEDNLINQKLIQRILNKMGYTIEIVANGYEVLEQMM-----------LKTYDVILMDV 1364
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP M+G E T+LIRK + + IIA+TA+AM + AGMD ++ KP++ D+L
Sbjct: 1365 QMPEMDGLETTQLIRKGKFKQPF---IIAMTANAMLEDKEICISAGMDDYIAKPMKLDEL 1421
Query: 1086 LDVVK 1090
+ ++K
Sbjct: 1422 VALLK 1426
>gi|168038964|ref|XP_001771969.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162676751|gb|EDQ63230.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1040
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 158/306 (51%), Gaps = 28/306 (9%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
+ ++AE+ S K+ LA SH++R + I+GL L E + TD E+L ++ C+
Sbjct: 449 SQQKAEQASHAKSDFLANMSHEIRTPIHGILGLTALLME-SELTTDQKESLESVKECADL 507
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL I+NSV++++KIEAG++E+ + FN+ +++ + M ++G+ ++ + D +V
Sbjct: 508 LLHIINSVLDLAKIEAGRLEVEKVSFNIRKMVSSTLRMLQARAQQRGLQLLWE-VDKAV- 565
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ GD KL+Q L NLV N++KFT +G ++V V + ++ + S
Sbjct: 566 -PQMLVGDVGKLQQCLINLVGNALKFTHKGSVTVSVKVAAEGTVMPLVTDVGD------S 618
Query: 563 KLFFRNKEGFDDLDALHSVERNP------NLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
L R DL S+E NP NLL EFEV DTG GI ++K +F+ F Q
Sbjct: 619 GLGNRVTSSSGDL----SLE-NPQCFLVSNLL--EFEVRDTGIGISQEKLQDMFKPFTQA 671
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT 676
+ G GLGL IV V L+ G I A+ E G +G F F + L +E P
Sbjct: 672 DASTSRLYGGTGLGLCIVHRFVELLGGTIW-AESEMG-KGSAFHFRLPLFLHVPQESPS- 728
Query: 677 DEEDPR 682
E P+
Sbjct: 729 --ESPK 732
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 10/126 (7%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L+ ED+AI KV S L K G + +G++A D +C + +D ++MD
Sbjct: 914 ILLAEDNAINQKVASRQLEKHGHVVTIVGDGQQAVDVICS---------RHDEFDLVLMD 964
Query: 1025 CEMPVMNGWEATRLIRKEEEQYD-VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
+MPVM+G AT+ +RK E Q + + +P++ LTAHA+ G + GMD +L KP
Sbjct: 965 VQMPVMDGLTATQTLRKAERQNNWMRLPVLGLTAHAIQGYQDTCLKHGMDGYLGKPFDIH 1024
Query: 1084 KLLDVV 1089
+LL +
Sbjct: 1025 QLLKTI 1030
>gi|170076780|ref|YP_001733418.1| two-component hybrid sensor kinase/response regulator
[Synechococcus sp. PCC 7002]
gi|169884449|gb|ACA98162.1| two-component hybrid sensor and regulator; PAS domain S-box protein
[Synechococcus sp. PCC 7002]
Length = 1076
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 126/266 (47%), Gaps = 46/266 (17%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA SH++R + IIG++ L T+ E+ + + ++ LL +LN +++ SK+E
Sbjct: 556 LATMSHEIRTPMNGIIGMLNLLLYSEGLTTEQQEHAHIALSSAESLLMLLNDILDFSKME 615
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQI 517
AGK++L +F+L Q E + +KG++++ D G GS ++GD +L+QI
Sbjct: 616 AGKLQLETVDFDLHQFFENFAKLMAFAAQEKGLNLIFD-LRGLRHGS--IQGDPGRLRQI 672
Query: 518 LCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDA 577
L NLVSN++KFT++G + +R
Sbjct: 673 LTNLVSNAIKFTNQGEVMIRC--------------------------------------- 693
Query: 578 LHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSM 637
ER + L F V DTG GI +K N +FE F Q++ G GLGL I Q +
Sbjct: 694 --QTERVGDRLDFTCSVTDTGIGIAAEKLNDLFEPFTQLEAGTTRRYGGTGLGLAITQRL 751
Query: 638 VHLMKGEIAIADKEPGERGVCFRFNV 663
+M G I + PGE G CF F +
Sbjct: 752 CQVMGGTIEVIST-PGE-GSCFTFTL 775
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED+ + + + + G +V G EA L L+ + PY I+M
Sbjct: 946 RLLLVEDNPVNQIIIRGLCQQFGFSVDVAPGGTEA-------LQMLQATPENQPYRLILM 998
Query: 1024 DCEMPVMNGWEATRLI-RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
DC MP MNG++ ++ I R IPIIALT + + AGM+ +L+KPL
Sbjct: 999 DCLMPKMNGFQTSQHIRRGGGGDRHRQIPIIALTTTLGEANQEQYLAAGMNDYLSKPLNP 1058
Query: 1083 DKLLDVV 1089
L + +
Sbjct: 1059 QTLRETL 1065
>gi|345892952|ref|ZP_08843761.1| hypothetical protein HMPREF1022_02421 [Desulfovibrio sp. 6_1_46AFAA]
gi|345046757|gb|EGW50637.1| hypothetical protein HMPREF1022_02421 [Desulfovibrio sp. 6_1_46AFAA]
Length = 1542
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 140/290 (48%), Gaps = 56/290 (19%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
NA A S KT L+ SHD+R + AI+G+ EL + + E+L +IRT S+
Sbjct: 1149 NALTLAREASQAKTDFLSSMSHDIRTPMNAIVGMTELALARRDNPVQIDESLSVIRTASE 1208
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG------VDVVLD 495
LL ++N +++MS+IE+G + LV+E F+ + +E++V + KKG V D
Sbjct: 1209 HLLRLINDILDMSRIESGHIVLVKELFSQREEVEKIVTRALALAGKKGQTFSHSFQVRHD 1268
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
C G VL ++ QIL NL+SN++KFT EG
Sbjct: 1269 KCIGDVL----------RIHQILENLISNAVKFTPEG----------------------G 1296
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
+S +++L +N + + F V DTG GI + IFE F +
Sbjct: 1297 RVSLAVTEL----------------PRKNEQIGWYRFVVADTGIGISPEDIPHIFEVFFR 1340
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
V+ +GH EG GLGL I++++V G I + + EPG RG F ++ L
Sbjct: 1341 VENLRVGHTEGTGLGLSIIKNIVDYKGGTIKV-ESEPG-RGTRFTVDLPL 1388
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 14/133 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGK---EAFDHVCKILSDLRKEGKAL 1016
++G L+VED+ + V +L G + NGK EAF+
Sbjct: 1412 ISGLHVLLVEDNEVNQLVAQRILESEGVTVSIADNGKAGWEAFE-----------SSAPE 1460
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
+D + MD +MPVM+G+EATR IR+ IP+IA+TA+A AG + ++AGM+ H+
Sbjct: 1461 AFDAVFMDIQMPVMDGYEATRAIRRSGHARAADIPVIAMTANAFAGDVRRCLNAGMNAHI 1520
Query: 1077 TKPLQKDKLLDVV 1089
KP++ KL +++
Sbjct: 1521 AKPIEPRKLFELL 1533
>gi|90856146|gb|ABE01358.1| sensory histidine kinase/response regulator hybrid [Allochromatium
vinosum]
Length = 742
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 138/276 (50%), Gaps = 53/276 (19%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE---DANPGTDLAENLGLIRT 438
A E AER S K+ LA SH++R + A+IGL +L E DA + LG IR
Sbjct: 516 RAQEAAERASRAKSQFLANMSHEIRTPMNAVIGLSDLLLETPLDAKQ----RDYLGKIRE 571
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
S+ LLGI+N +++ SKIEAGK++L + F+L LL+++ ++ + + ++++ D
Sbjct: 572 SSRLLLGIINDILDYSKIEAGKLDLSLQPFSLDDLLDQMRTLFGNEADARDIELIFDLA- 630
Query: 499 GSVLGSCH-VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ S H V GD ++L+Q+L NL+SN++KFT +G + + S +Q
Sbjct: 631 ---VSSLHRVEGDALRLRQVLINLLSNAVKFTEQGQVVL-------SIRQ---------- 670
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
LDA + R FEV DTG GI ++Q +F+ F Q
Sbjct: 671 -----------------LDAGTASAR------LRFEVRDTGIGIAPEQQTRLFKPFSQAD 707
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
+ G GLGL I Q +V M G + + + PG
Sbjct: 708 SSTTRRYGGTGLGLVISQKLVEKMGGTLVL-ESTPG 742
>gi|294055429|ref|YP_003549087.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
DSM 45221]
gi|293614762|gb|ADE54917.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
DSM 45221]
Length = 885
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 131/283 (46%), Gaps = 46/283 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
M A ++A+ + K LA SH++R + +IG ELC E A L + C
Sbjct: 226 MTAMKEAQAANRAKGEFLAAMSHEIRTPINGVIGASELCQETELDAEQRA-YLDTVIQCG 284
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
LL ++N V++ SKIEAG++ L + FN +LEEV++ + KKG++++L CD
Sbjct: 285 NTLLSLVNDVLDFSKIEAGQLNLEQLNFNPEAVLEEVIEEFAGTVKKKGIELIL-SCDDR 343
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V GD +LKQI NL+ N++KFT G I + A
Sbjct: 344 M--PKYVIGDPTRLKQIFYNLLGNAVKFTEAGEIVLSA---------------------- 379
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
H VER+ L F+V DTG GI + ++ +IF F Q +
Sbjct: 380 ------------------HIVERSAQLAVIRFKVRDTGIGISETRREAIFSSFTQEDMST 421
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + + LM G +++ D GE G F V
Sbjct: 422 TRRYGGTGLGLAICKELTELMAGSLSV-DSRVGE-GSTFTLEV 462
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 14/132 (10%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L+ ED+ + + L KLG + V NG EA + V + +D I+MD
Sbjct: 631 ILLAEDNEVNQNIAKRRLKKLGHEVTVAVNGHEALEQVAQ-----------HDFDCILMD 679
Query: 1025 CEMPVMNGWEATRLIRKEEEQ--YDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+MP M+G+EAT+ IR E Q H I+A+TAHAM G A + MD +++KP +
Sbjct: 680 IQMPGMDGYEATQEIRNLEIQDGRSRHF-IVAMTAHAMEGDAERCFANDMDEYISKPFRV 738
Query: 1083 DKLLDVVKSIDE 1094
++L +V++ E
Sbjct: 739 ERLQEVLEIAQE 750
>gi|297845680|ref|XP_002890721.1| hypothetical protein ARALYDRAFT_472928 [Arabidopsis lyrata subsp.
lyrata]
gi|297336563|gb|EFH66980.1| hypothetical protein ARALYDRAFT_472928 [Arabidopsis lyrata subsp.
lyrata]
Length = 1039
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 182/380 (47%), Gaps = 33/380 (8%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+KQ+ ++AE + K+ LA SH++R + ++G++ + D + + +
Sbjct: 438 MKQLK--KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLM-DTELDVTQQDYVRTAQ 494
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
K L+ ++N V++ +KIE+GK+EL E F+L +L++V+ ++ +KGV++ +
Sbjct: 495 ASGKALVSLINEVLDQAKIESGKLELEEVRFDLRGILDDVLSLFSSKSQQKGVELAVYIS 554
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ---DIIASNR 554
D + GD + +QIL NL+ NS+KFT +GHI V + ++ F+ + +S
Sbjct: 555 DRV---PDMLIGDPGRFRQILTNLMGNSIKFTEKGHIFVTVHLVEELFESIDGETASSPE 611
Query: 555 NVISKCLSKLFFRNKEGFDDLDALH-SVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
+ +S R+ E F H S E +P + V+DTG GIP + Q+ IF F
Sbjct: 612 STLSGLPVADRQRSWENFKAFSNEHRSFEPSPLDINLIVSVEDTGVGIPLEAQSRIFTPF 671
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
+QV + G G+GL I + +V LMKGEI + + G F F TAV
Sbjct: 672 MQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFSSTP--KVGSTFTF----TAVFSNGM 725
Query: 674 PDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLN 733
T+ + ND PQ F+ F G A + + R + Y L
Sbjct: 726 QTTERK-----ND-PQNNNQPIFSEFRGMKA--------VVVDHRPARAKVSWYHFQRLG 771
Query: 734 IKVTIVKQEKNLHQELRKVK 753
I+V +V + + Q LR +K
Sbjct: 772 IRVEVVPR---VEQALRYLK 788
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 28/144 (19%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G+K L+V+D+ + L+V + L K GA +G K +S L+ + +D
Sbjct: 890 LLGRKILIVDDNNVNLRVAAGALKKYGADVVCAESG-------IKAISLLKPPHE---FD 939
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHIPIIALTAHAMA 1061
MD +MP M+G+EATR IR EE+ + H+P++A+TA +
Sbjct: 940 ACFMDIQMPEMDGFEATRRIRDMEEEMNKRIKNGEALIVENGNKTSWHLPVLAMTADVIQ 999
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKL 1085
+ + GMD +++KP + ++L
Sbjct: 1000 ATHEECLKCGMDGYVSKPFEAEQL 1023
>gi|157737045|ref|YP_001489728.1| two-component sensor histidine kinase [Arcobacter butzleri RM4018]
gi|157698899|gb|ABV67059.1| two-component sensor histidine kinase [Arcobacter butzleri RM4018]
Length = 765
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 133/281 (47%), Gaps = 51/281 (18%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E A+ + K+ LA+ SH++R L AI+G + + N ENL +I+ +
Sbjct: 309 AMEDAKNANQAKSIFLARMSHELRTPLNAILGFANILKKSMNATNQEKENLNIIKKSGEH 368
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL I+N ++E+SKIEAGK+E+ + F+ +L++E+ D++ K + ++ +
Sbjct: 369 LLNIINEILELSKIEAGKIEINPKNFDFCELIKEIEDIFALRCKSKNLKFTINQTNNL-- 426
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++ D +L+QIL NL+ NS+KFT+EG I + I +
Sbjct: 427 -PKFIKADEQRLRQILINLLGNSLKFTNEGQIFLN-------------------IYSLNN 466
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
KLF FEV DTG GI Q IF+ F QVK
Sbjct: 467 KLF--------------------------FEVKDTGIGIDLKNQEKIFKPFEQVKLDNYT 500
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
Q+G GLGL I + ++ LM G I + K +G F F++
Sbjct: 501 -QQGTGLGLAITKELIALMGGTIYV--KSQINKGSEFYFSI 538
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 1006 LSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVAS 1065
L K+ + D I MD M ++G E R+IR E+Q ++IPIIAL+A+
Sbjct: 603 LEVFEKQNENEKIDLIFMDILMEDLDGLETIRIIR--EKQNGINIPIIALSANVFEDDKK 660
Query: 1066 KIVDAGMDFHLTKPLQKDKLLDVVK 1090
+ + AG + L KP+++ ++L +++
Sbjct: 661 QAIKAGANDFLPKPVEEKEILQILQ 685
>gi|150017029|ref|YP_001309283.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
NCIMB 8052]
gi|149903494|gb|ABR34327.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
NCIMB 8052]
Length = 1083
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 145/283 (51%), Gaps = 46/283 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E AE +M K+ LA SH++R L I+G + + E + + + + I+T S+
Sbjct: 436 AKEAAEDANMAKSQFLANMSHEIRTPLNGIVGFLSIL-EKTDLDSTQQDYIETIQTSSET 494
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N ++++SKIEAG+ME+ + F++ ++E + +Y +KG++ L+ S +
Sbjct: 495 LLVVINDILDISKIEAGRMEIEKVAFDIRSVIESTIFLYDAKAREKGLE--LNMLINSAI 552
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
SC V GD K++QI+ NLVSN++KFT G + + +V K++
Sbjct: 553 PSCLV-GDPTKIRQIISNLVSNAVKFTHNGEVFIEVSVIKET------------------ 593
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
N E +Q FE+ DTG G+ +++ + +F+ F Q ++
Sbjct: 594 -----NTE-----------------VQLYFEIRDTGIGMNEEEISKLFKPFSQADSSSTR 631
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + +V +M G I++ K RG F F++LL
Sbjct: 632 KYGGTGLGLAICKKIVEMMGGTISV--KSVKNRGTTFCFDLLL 672
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 75/130 (57%), Gaps = 19/130 (14%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+VED+ I +K L G ++ +G +A C+ KE YD I M
Sbjct: 840 KILLVEDNDINIKFFVNSLKLNGLTCDIAIDGAKAL-KACE-----NKE-----YDIIFM 888
Query: 1024 DCEMPVMNGWEATR---LIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
DC+MPVM+G+EATR L+R + ++P+IA+TA++M K ++AGM +L+KP
Sbjct: 889 DCQMPVMDGYEATRKILLLRSYK-----NVPVIAMTAYSMKDDEIKCLEAGMIDYLSKPF 943
Query: 1081 QKDKLLDVVK 1090
D+++++++
Sbjct: 944 TVDQVMEMLE 953
>gi|428770259|ref|YP_007162049.1| GAF sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
gi|428684538|gb|AFZ54005.1| GAF sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
Length = 672
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 144/286 (50%), Gaps = 44/286 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+A++ + K+ LA+ SH++R SL I+G +L + D N + ENL +I + +
Sbjct: 204 AKEEADKANQAKSEFLARMSHELRTSLNGILGFCQLLNRDENLTSLQRENLKIINSSGEH 263
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N ++E++KIE GK+ L + +L +LL+ + DM+Y +K +++++ V
Sbjct: 264 LLNLINDILELTKIEVGKISLNITDCDLDKLLDSLRDMFYLKISEKNLELII---TRDVD 320
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
HVR D KLKQ+L NL+ N++KFT +G IS++ I N+N+
Sbjct: 321 IPNHVRLDERKLKQVLINLLHNAIKFTHKGQISLKIQS---------IKDNKNI------ 365
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
NLL F V DTG GI ++ IF+ F Q + +
Sbjct: 366 --------------------EKTNLL---FIVKDTGVGITPEELKIIFKPFEQT-QLGIK 401
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
+G GLGL I + +V LM G + + K +G F F + T +
Sbjct: 402 SNQGNGLGLSISKKLVKLMGGNLQV--KSSLNQGSSFYFQIPATII 445
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 923 LNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK-KFLVVEDDAIVLKVTSAV 981
LN+ SF + A+I ++ + + D + + KP K K L+VED I + +
Sbjct: 430 LNQGSSFYFQIPATIIKKNKNITKHSF--DDRLNLKPSPEKNKILIVEDIEINRQFLIKL 487
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
L + + +G++A D K L DL I+MD ++P++NG E T++IR
Sbjct: 488 LSPMSFNIYIAEDGEKALDLWEKHLPDL-----------ILMDVQIPILNGLEVTQIIR- 535
Query: 1042 EEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
E+ ++ P II ++A A A K G D + KP+ ++ LL
Sbjct: 536 --EKKNLPQPKIIIVSASAFANDVEKATCQGCDDFVMKPIIENILL 579
>gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea
thermophila UNI-1]
gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea
thermophila UNI-1]
Length = 1819
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 138/291 (47%), Gaps = 50/291 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A +QA S K+ LA SH++R L A+IG+ E+ D + A+ +IR K
Sbjct: 1141 ARDQALEASRLKSEFLATMSHEIRTPLNAVIGMSEILL-DTPLNEEQADFARIIRDSGKS 1199
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGS 500
LL I+N +++ SKIEAG+M L EF L L++ V++M+ + KK + + + P +
Sbjct: 1200 LLSIINDILDFSKIEAGRMTLESVEFQLLPLVDSVIEMFASIVQKKNLHLFGWIAPDVPN 1259
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ V GD V+L+Q+L NLV N +KFT +GH+SV +++
Sbjct: 1260 I-----VVGDPVRLRQVLINLVGNGVKFTEQGHVSVSISLQ------------------- 1295
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
ER N + EV DTG G+ + + +F F Q +
Sbjct: 1296 ---------------------ERLENEVILRVEVHDTGIGLSETARKRLFTPFTQADGSM 1334
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER 671
G GLGL I +S+V LM GEI + E +G F F V L+ E+
Sbjct: 1335 TRRFGGTGLGLAISKSLVELMGGEIGVESVEG--QGSTFWFTVTLSVRPEQ 1383
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 80/139 (57%), Gaps = 9/139 (6%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+P K L+ ED++ ++ + L +LG + ++ G++A + +
Sbjct: 1536 EPDGEKIVLLAEDNSANQRLATVQLKRLGYQADLVTTGEQALEMYMR---------HPER 1586
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
Y I+MDC+MPVM+G+EATR IR+ E HIPIIA+TA+AM G + AGMD +++
Sbjct: 1587 YLAILMDCQMPVMDGFEATRRIREFEHTRQRHIPIIAMTANAMQGDREACIQAGMDDYIS 1646
Query: 1078 KPLQKDKLLDVVKSIDETM 1096
KP+ +L +V+ +++ +
Sbjct: 1647 KPVSIQRLGEVLAAVERAV 1665
>gi|428312486|ref|YP_007123463.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428254098|gb|AFZ20057.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1949
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 101/339 (29%), Positives = 163/339 (48%), Gaps = 17/339 (5%)
Query: 354 ISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAII 413
I+L +L + +RE L I + + AE + K+ LA SH++R + A+I
Sbjct: 1132 IALAQARLLEQEKRQREQ-LAEQNIALETSKQAAEAANRAKSEFLATMSHEIRTPMNAVI 1190
Query: 414 GLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473
G+ L D + + IR + LL I+N +++ SKIE+GK+EL E+ F L
Sbjct: 1191 GMTGLLL-DTEVTPQQHQFVETIRNSGEALLTIINDILDFSKIESGKLELEEQPFKLRMC 1249
Query: 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGH 533
+EE +D+ +K +++ D + GD +L+QIL NL+SN++KFT G
Sbjct: 1250 IEESLDLLAPKAAEKELELAYL-IDSQT--PVTIAGDVTRLRQILVNLLSNAVKFTRSGE 1306
Query: 534 ISVRAAVKKKSFKQDI----IASNRNV-ISKCLSKLFFRNK--EGFDDLDALHSVERNP- 585
++V K K ++ + +N IS + +K + D L SV +P
Sbjct: 1307 VTVSVTAKGVPVKHEVGRESVGNNPGFSISPSPNTQPQLDKPCDPGTRQDTLSSVSVHPV 1366
Query: 586 --NLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKG 643
+ +F V DTG GIP ++ + +F+ F QV + H G GLGL I + + +M G
Sbjct: 1367 PYPYYEIQFAVKDTGIGIPTERLDRLFQPFSQVDSSTSRHYGGTGLGLVISKRLCEMMGG 1426
Query: 644 EIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPR 682
I + + E G +G F F V+ AV D D P+
Sbjct: 1427 RIWV-ESEVG-KGSIFYFTVIAHAVYSSTPTDLDVAQPQ 1463
Score = 39.7 bits (91), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 12/142 (8%)
Query: 951 SDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLR 1010
+D ++ L GK+ L+V+D+A K+ + G +G+EA D +
Sbjct: 1455 TDLDVAQPQLEGKRLLIVDDNATNRKILTLQGKSWGMLTRAAHSGREALDWLS------- 1507
Query: 1011 KEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDA 1070
+G+ +D ++D +MP M+G IRK+ + +P++ LT+ + +
Sbjct: 1508 -QGEL--FDLAILDMQMPGMDGLTLATEIRKKPGYQE--LPLVMLTSIGKPESSDPSQMS 1562
Query: 1071 GMDFHLTKPLQKDKLLDVVKSI 1092
L KP+++ +L + + +
Sbjct: 1563 HFAAFLNKPIKQSQLYESLNQV 1584
>gi|443477475|ref|ZP_21067320.1| histidine kinase [Pseudanabaena biceps PCC 7429]
gi|443017408|gb|ELS31858.1| histidine kinase [Pseudanabaena biceps PCC 7429]
Length = 511
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 143/282 (50%), Gaps = 41/282 (14%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A + AE + K+ +A SH++R+ L AIIG +L + ++ EN G+I+ +
Sbjct: 39 AKDNAEVANQAKSTFIANMSHELRSPLNAIIGFSQLMLRTKHLPSEQYENAGIIQHSGEY 98
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N+V++ SKIEAGK L ++ +L QLL ++ DM + + G++++ D
Sbjct: 99 LLTLINNVLDFSKIEAGKTTLNLKDIDLHQLLNDLEDMLHLQAVNAGLELIFARGDNL-- 156
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRA-AVKKKSFKQDIIASNRNVISKCL 561
++ D VKL+Q+L NL+ N++KFT +G + +R A++ + FK
Sbjct: 157 -PHYIYTDGVKLRQVLLNLLGNALKFTHQGEVILRVNAIEHQKFKD-------------- 201
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
+ + H++ F V DTG GI + +FE F Q E+
Sbjct: 202 ----------YQEY-TFHTI---------NFSVSDTGVGISSTELAKLFEAFSQT-ESGR 240
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
QEG GLGL I + V LM G+I + + + G +G F F++
Sbjct: 241 AAQEGTGLGLAISRQFVQLMGGDITV-ESQLG-KGTTFNFSI 280
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L V+D AI ++ +L LG + + NG+EA I + P+ I M
Sbjct: 309 KLLAVDDKAINRQLLIGILAPLGFEIKEASNGREA----IAIWDEWE------PH-LIWM 357
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM+G+EAT+ I+ + +IALTA + + ++ AG D + KP ++
Sbjct: 358 DMRMPVMDGYEATKYIKSTTKGNAT--AVIALTASVLEEEKAIVLSAGCDDFVRKPFKES 415
Query: 1084 KLLDVV 1089
+ + +
Sbjct: 416 TIFETI 421
>gi|427725002|ref|YP_007072279.1| integral membrane sensor hybrid histidine kinase [Leptolyngbya sp.
PCC 7376]
gi|427356722|gb|AFY39445.1| integral membrane sensor hybrid histidine kinase [Leptolyngbya sp.
PCC 7376]
Length = 905
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 141/281 (50%), Gaps = 35/281 (12%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+AE + K+ LA SH++R L AI+G ++ + T+ +L +I +
Sbjct: 364 AQEKAEIANQAKSSFLANMSHELRTPLNAILGFTQVMQHHDSLTTEQNNHLNIINQSGEH 423
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V++MSKIEAGK L ++ FNL +LLE + M KG+D+V+D C V
Sbjct: 424 LLALINDVLDMSKIEAGKSTLNKDSFNLPKLLETLEAMLKFKAESKGLDLVID-CAPDV- 481
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+R D+ KL+Q+L NL+ N++KFT +G + ++ AS N S+
Sbjct: 482 -PRWIRTDQQKLRQVLINLLGNALKFTQDGQVQLQVTQTN--------ASEENPESR--- 529
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+ AL V FEV D+G GI ++ +F+ F Q +
Sbjct: 530 ---------LEATSALSQV--------LTFEVIDSGPGITPEELQHLFDSFSQGEHGK-- 570
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
Q G GLG+ I QS V LM G+I + + + G+ G F F +
Sbjct: 571 QQGGTGLGMAISQSFVQLMGGKIRV-ESQLGQ-GTRFSFEL 609
>gi|256829408|ref|YP_003158136.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
gi|256578584|gb|ACU89720.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
Length = 1070
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 135/280 (48%), Gaps = 48/280 (17%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE + K+ LA SH+VR L I+G+++L + P +L + + S
Sbjct: 687 VRAKEIAESANRAKSEFLANISHEVRTPLNGIMGMLQLAMQSEVP-PELEDYIRTALESS 745
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-PCDG 499
++LL +LN V++ +K++AGKME+V+ +F+L LL + V+ + + + K + +VL P D
Sbjct: 746 RNLLRVLNDVLDFTKVDAGKMEIVDRDFSLDDLLSQAVNFFRALAMDKKISLVLSAPRD- 804
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
+G GD +L+QIL NL+ N++KFT G +++ A
Sbjct: 805 --IG--RFVGDEGRLRQILFNLMGNALKFTDTGSVTLEA--------------------- 839
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
V + + F V D G GIP DK +FE F QV T
Sbjct: 840 -------------------WPVGEQGDATRILFAVRDEGIGIPTDKLGYVFESFTQVDGT 880
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
+G GLGL IV+ +V LM G I++ E GE F
Sbjct: 881 YSRRYQGTGLGLPIVKRLVTLMGGNISVESME-GEGTTIF 919
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 14/151 (9%)
Query: 941 CSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFD 1000
LQQV + + + + L+VEDD + + + +L K+G RNG+EA D
Sbjct: 927 APPLQQVQTSAQPELAMTAVRPLGILLVEDDVVNMTMARRMLEKMGHSVICARNGQEALD 986
Query: 1001 HVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE--EQYDVHIPIIALTAH 1058
+ +A D ++MD +MP M+G EAT ++R + Y +PIIALTAH
Sbjct: 987 TL-----------QAPGVDLVLMDIQMPEMDGIEATEIVRNDPLFTPY-ARVPIIALTAH 1034
Query: 1059 AMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
AM G K + GMD +L+KP +L +++
Sbjct: 1035 AMGGDEEKFLSHGMDAYLSKPFDHARLQELL 1065
>gi|317050810|ref|YP_004111926.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
indicum S5]
gi|316945894|gb|ADU65370.1| ATP-binding region ATPase domain protein [Desulfurispirillum
indicum S5]
Length = 864
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 136/292 (46%), Gaps = 46/292 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A +QAE + K+ LA SH++R L+ IIG+V+L D + E L +
Sbjct: 201 ARDQAEGANRAKSQFLANMSHELRTPLSGIIGMVDLLL-DTRLDNEQQEYARLASDSAHA 259
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N +++ SKIEAGK+E+ E EF+L L E V +++ KKG+ V+ D +
Sbjct: 260 LLALINDILDFSKIEAGKLEIEEAEFSLGSLTEGVTELFALAAQKKGI-VLTSYVDPQL- 317
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+VRGD ++L+Q+L NL+SN++KFT +G + ++ + + +I
Sbjct: 318 -PAYVRGDALRLRQVLANLLSNALKFTEKGSVQLQVKILGDGGQAPLI------------ 364
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
FEV DTG G+ + +F+ F Q +
Sbjct: 365 ----------------------------RFEVCDTGIGVDAEVAERLFQSFTQADSSTTR 396
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
G GLGL I +++V LM GEI I + +G F F + L P
Sbjct: 397 KYGGTGLGLAICRNLVELMGGEIGIESRLG--QGSTFWFTLPLLPALNHAEP 446
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 112/237 (47%), Gaps = 40/237 (16%)
Query: 877 RPFH-----------GSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPN---- 921
RPFH G+ + ++L L +C+ F S L DPN
Sbjct: 502 RPFHVVILSAQLAGDGAWISQMLALHRQCRLVLLTPF------GGSNGLPMGLDPNMDTC 555
Query: 922 ----PLNKLKSFGAEAGA----SISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAI 973
P++ +K + A + +S+ C + + A + G + L+VED+ +
Sbjct: 556 ILSHPISSIKLWRALTSSVQSEPVSAVCPVVPEGKAVTQGDREPGVRDVLPVLLVEDNRV 615
Query: 974 VLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGW 1033
L K+G + + +G+EA + + K Y ++MDC+MPVM+G+
Sbjct: 616 NQLAVRMQLEKMGFEVHLAAHGREALEKLEKN-----------TYALVLMDCQMPVMDGY 664
Query: 1034 EATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
EATR IR +E D H+PIIALTA+AM K + AGMD HLTKP++ + L V++
Sbjct: 665 EATRAIRAKECGTDNHLPIIALTANAMEQDREKCLAAGMDGHLTKPVRPELLQPVLE 721
>gi|218246123|ref|YP_002371494.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
gi|218166601|gb|ACK65338.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
Length = 1090
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 144/295 (48%), Gaps = 29/295 (9%)
Query: 358 LFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVE 417
LF ++ +R+ +KQ A E A+ + K+ LA SH++R L AI+G +
Sbjct: 562 LFTAIVRDITERQQ--AEEALKQ--AKEAADAANRAKSEFLASMSHELRTPLNAILGFTQ 617
Query: 418 LCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEV 477
+ D + +NL +I + LL ++N ++EMSKIEAG+ F+L +LL+ +
Sbjct: 618 VMRRDRTLNPEHQQNLSIISRSGEHLLELINDILEMSKIEAGRTTFHSNSFDLYRLLDNL 677
Query: 478 VDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVR 537
M + +KG+ ++ + ++ D KL+Q+L NL+ N++KFT EG +++R
Sbjct: 678 EAMLHLKAQEKGLQLIFERTPEV---PQYLETDEGKLRQVLINLLGNAIKFTEEGGVTLR 734
Query: 538 AAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLD----ALHSVERNPNLLQFEFE 593
+ +S K FR +D AL + + + FE
Sbjct: 735 VKSEVRSRKGG-----------------FRESATLRTIDLEKPALTPIIADSEQIVITFE 777
Query: 594 VDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIA 648
V+D+G GI ++ + +F F Q ET QEG GLGL I + V LM G I+++
Sbjct: 778 VEDSGPGIAPEEVDQLFAAFGQT-ETGRQAQEGTGLGLPISRKFVQLMGGNISVS 831
Score = 40.4 bits (93), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 15/110 (13%)
Query: 981 VLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040
+L +G + NGKEA + + + P+ I MD MP+++G++AT+ I+
Sbjct: 891 LLSSMGFEVRQASNGKEALE-IWETWE---------PH-LIWMDMRMPIIDGYQATQRIK 939
Query: 1041 KEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ Q V +IALTA A + ++ AG D + KP +++ L + +
Sbjct: 940 ATTKGQGTV---VIALTASAFEEERNMVLSAGCDDFMRKPFREEVLWEKI 986
>gi|393768134|ref|ZP_10356676.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
gi|392726527|gb|EIZ83850.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
Length = 678
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 136/293 (46%), Gaps = 62/293 (21%)
Query: 376 ALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL 435
AL + A E+AE S+ K+ LA SH++R L I+G+ +L L NL L
Sbjct: 157 ALRSRDAALERAEAASVAKSRFLATVSHEMRTPLNGILGMADLV---------LGTNLDL 207
Query: 436 --------IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIK 487
+RT + LLG+++ V++ S+IEAG+++L E F+L L E VV++
Sbjct: 208 EQRTYVEAVRTSGQALLGLIDGVLDFSRIEAGRLDLAAEPFDLPALAESVVELLAPRAQD 267
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
KG+++ LD + G GD +++QIL NL N++KFT G + V
Sbjct: 268 KGIEIALDVTESFPRGLV---GDADRVRQILINLAGNAIKFTERGGVGV----------- 313
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
S F ++G ++ V DTG GIP+D+
Sbjct: 314 --------------SLGFTPIQDGGGEV---------------TLAVSDTGSGIPEDRLP 344
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
+FEEF Q +A EG GLGL I + +V M G I AD G RG FR
Sbjct: 345 ILFEEFEQGDGSASRSHEGTGLGLAITRRLVTRMGGRIE-ADSRVG-RGSTFR 395
>gi|298528353|ref|ZP_07015757.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512005|gb|EFI35907.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1437
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 146/292 (50%), Gaps = 29/292 (9%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
AE + K+ LA SH++R + +IG+ L D + ++ +R+ ++ LL +
Sbjct: 692 AEEATKAKSEFLANMSHEIRTPMNGVIGMTGLLL-DTDLDSEQQHYARTVRSSAESLLTV 750
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGS 504
+N +++ SKIEAG++++ +F+L +L + M +KG++++ +DP S+
Sbjct: 751 INDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEEKGLELICSMDPNVPSM--- 807
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
VRGD +L+QIL NLV N++KFT G + ++ + R V +C
Sbjct: 808 --VRGDSGRLRQILMNLVGNAVKFTEHGEVEIKVS--------------RMVNDEC-ENP 850
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
+E DL ++ L+ F V DTG GIP+DKQ+S+FE F QV +
Sbjct: 851 NAETQENSHDLYRSSFTTQHSCLMHFS--VRDTGIGIPEDKQDSLFESFSQVDASTTRKF 908
Query: 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE--RERP 674
G GLGL I + + +M G + E RG F F V L E +ERP
Sbjct: 909 GGTGLGLAISRQLAEIMGGTAGLESVEG--RGSTFWFTVRLGIQHEQQQERP 958
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 57/173 (32%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV ED+ + +V +L K+G + + NG+E + I PYD ++M
Sbjct: 1120 RILVAEDNMVNQQVALGILKKMGLRADAVANGREVLHALQNI-----------PYDLVLM 1168
Query: 1024 DCEMPVMNGWEATRLIRKEE---------------------------------------- 1043
D +MP M+G +ATR IR E
Sbjct: 1169 DVQMPEMDGLKATRRIRASEVRGQKSEIRSQKSEVSDQRLESESQNSSIPESPNSSTPKS 1228
Query: 1044 ------EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
E + IPIIA+TA AM + ++AGMD + KP+ D+L V++
Sbjct: 1229 PNSSIPESQNPRIPIIAMTAGAMQEDRERCIEAGMDDYTAKPVNPDELARVLE 1281
Score = 47.8 bits (112), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 957 EKP----LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFD--HVCKILSDLR 1010
E+P L G + L+V+D++ + LG G + E NG A H K +D
Sbjct: 956 ERPAPACLQGVRTLIVDDNSTNRETLRVRLGSWGMRSEEAANGSTALSMLHQAKADND-- 1013
Query: 1011 KEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDA 1070
P++ ++D +MP M+G R I+++ + D + I+ +A G A ++ +A
Sbjct: 1014 ------PFEVAVLDMQMPDMDGETLGRNIKEDGQLKDTRL-IMMSSATGQTGDAKRLHEA 1066
Query: 1071 GMDFHLTKPLQKDKLLDVVKSI 1092
G D + KP+ +L ++ I
Sbjct: 1067 GFDSIMNKPVLPSELYACLEKI 1088
>gi|158339052|ref|YP_001520229.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
gi|158309293|gb|ABW30910.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
Length = 1564
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 147/295 (49%), Gaps = 36/295 (12%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA--NPGTDLAENLGLIRTC 439
A + A+ ++ K+ LA SH++R + A+IG+ L N D E IR+
Sbjct: 1018 QARKDADAANVAKSEFLATMSHEIRTPMNAVIGMTGLLLNTTLDNQQRDFVET---IRSS 1074
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPC 497
LL ++N +++ SKIEAGK+E E+ F+L +EE + + I K +++ + DP
Sbjct: 1075 GDALLTLINDILDFSKIEAGKLEFEEQPFSLRACIEESLRLVAPRAIDKQLELAYLFDPS 1134
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ H+ GD +L+QIL NL++N +KFT +G + + + QDI ++ I
Sbjct: 1135 TPN-----HIVGDVTRLRQILVNLLTNGVKFTEQGEVVI--------YVQDITDTD---I 1178
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
++ + ++ F D ++ L+QFE V D+G GIP D+ + +F+ F QV
Sbjct: 1179 TQPETT---SQRKNFTD------IQNQRRLIQFE--VRDSGIGIPADRMDRLFKSFSQVD 1227
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
+ G GLGL I +S+ +M G I + K G F F + + E E
Sbjct: 1228 ASTTKKYGGTGLGLAICRSLSQMMGGRIWVESK--AGVGSSFFFTIAVPVAPEGE 1280
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 12/122 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED + KV +L +LG + +V NG+E +L L ++ YD ++M
Sbjct: 1437 QILLAEDIVVNQKVALLILKQLGYRADVANNGEE-------VLEALHRQS----YDVVLM 1485
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G A R I E+ Q + IIALTA+AM G + AGM +++KP++ D
Sbjct: 1486 DVQMPEMDGLTAARHI-TEQWQEEEQPYIIALTANAMQGDREMCMAAGMHDYVSKPIRVD 1544
Query: 1084 KL 1085
+L
Sbjct: 1545 EL 1546
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
S++ L+GK+ LVV+D+ ++ + G + G EA L+ L + K
Sbjct: 1286 SQQLLDGKQLLVVDDNPTNRRILTLQAQTWGMGIQTVSGGAEA-------LALLESDSK- 1337
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075
+D ++D +MP M+G E R IR+ +++ H+P++ L++ + +
Sbjct: 1338 --FDLAILDMQMPEMDGVELARHIRQLDQRK--HLPLVMLSSLGQDEIIKHKQEIQFSAI 1393
Query: 1076 LTKPLQKDKLLDVVKSIDETMEKQ 1099
L KP+Q+ L D + I E Q
Sbjct: 1394 LNKPIQQSYLYDALAEIFEGQRVQ 1417
>gi|392534310|ref|ZP_10281447.1| two-component hybrid sensor and regulator [Pseudoalteromonas arctica
A 37-1-2]
Length = 1587
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 146/297 (49%), Gaps = 49/297 (16%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
+AE ++ K+ LA SH++R + ++G++EL ++ + +G+ +T + LLG
Sbjct: 1063 KAEDAAIAKSQFLATMSHEIRTPMNGVLGMLELVQLES-LSKPIETKVGIAKTSAHSLLG 1121
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N +++ SK EAGK+EL E FN L+ EV +KG++++LD L
Sbjct: 1122 VINDILDFSKAEAGKIELEEINFNGRDLIGEVAAAQALTAQEKGIEIILDLV---ALEPS 1178
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
+ GD +++Q+L NL+SN++KFTS+G + V A + K + + +AS
Sbjct: 1179 QLCGDPGRIRQVLTNLLSNAVKFTSKGEVVVSAKINKVAQGLEFVAS------------- 1225
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
+ D+G GI ++KQ +F F QV +
Sbjct: 1226 ----------------------------IKDSGIGISEEKQQQLFTPFSQVDASTTREYG 1257
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER--PDTDEED 680
G GLGL I + + LM G I++ E G +G F ++LT ++ER P+ + E+
Sbjct: 1258 GSGLGLAICKQLCELMGGAISLT-SEAG-KGSTFTATIMLTPGDQKERYIPNINMEE 1312
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 9/132 (6%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
EK + L+VED+ I +V +L KL + NG+ A D + + +
Sbjct: 1458 EKMQEFSQILLVEDNPINQQVAKLMLKKLNCDVTIAGNGQLAID--------ILEAHDSG 1509
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYD-VHIPIIALTAHAMAGVASKIVDAGMDFH 1075
+ ++MDC+MPVM+G+ AT IRK +I IIA+TA+AM + + AGMD +
Sbjct: 1510 YFKLVLMDCQMPVMDGFAATAAIRKGVAGIQHKNIKIIAITANAMNSDKERCITAGMDDY 1569
Query: 1076 LTKPLQKDKLLD 1087
L+KP+Q D L D
Sbjct: 1570 LSKPIQLDILKD 1581
Score = 47.8 bits (112), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LVV+D+ V S L GAK + + EA D + D K+ YD ++D
Sbjct: 1316 LVVDDNETNRIVISQQLEHWGAKVALACDAHEALDMCAQQYKD-----KSCMYDIAVLDM 1370
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP M+G E + + K E Y +P++ +T+ A A + DAG + KP+ L
Sbjct: 1371 QMPGMDGIELCKAL-KAHEHYK-SMPLVMMTSIAGMEGAQRYSDAGFQAYFPKPVTTADL 1428
Query: 1086 LDVVKSI 1092
+ + I
Sbjct: 1429 ISALSVI 1435
>gi|434405423|ref|YP_007148308.1| signal transduction histidine kinase [Cylindrospermum stagnale PCC
7417]
gi|428259678|gb|AFZ25628.1| signal transduction histidine kinase [Cylindrospermum stagnale PCC
7417]
Length = 574
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 148/311 (47%), Gaps = 46/311 (14%)
Query: 360 IILIAKAAKREMFLCAALIKQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVEL 418
I L+AK+ R + + K++ A E AE S K+ LA SH++R L A+IGL +L
Sbjct: 303 IGLLAKSLNRLIERVSQRTKELQQAKELAEAASKAKSRFLANVSHELRTPLNAVIGLSQL 362
Query: 419 CHEDANP---GTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLE 475
+DA D +L I + + LL ++N ++++SKIEAGK+ L E F + L+
Sbjct: 363 LQDDATDLGLSEDFITDLETINSAGRHLLELINDILDLSKIEAGKITLYPETFEIGTLIN 422
Query: 476 EVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHIS 535
VV + I+K +V+ CD LG + D+ +++Q+L NL+SN+ KFT+ G ++
Sbjct: 423 NVV-LTVKSAIEKNGNVLEVNCDRQ-LGMMY--ADQTRMRQVLLNLLSNAAKFTTNGIVT 478
Query: 536 VRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVD 595
+ KS KQD++ RN F V+
Sbjct: 479 LTV----KSEKQDLL--------------------------------RNTPFGIITFTVN 502
Query: 596 DTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGER 655
DTG G+ +Q +F+ F Q + G GLGL I + +M GEI I +PG
Sbjct: 503 DTGIGMSPSQQQQLFQPFTQGDNSTTKKYGGTGLGLAISRHFCQMMGGEI-IVKSQPG-V 560
Query: 656 GVCFRFNVLLT 666
G F + LT
Sbjct: 561 GSTFTVRLPLT 571
>gi|392551218|ref|ZP_10298355.1| GGDEF domain protein [Pseudoalteromonas spongiae UST010723-006]
Length = 1380
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 145/288 (50%), Gaps = 45/288 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++AE + K+ LA SH++R + +IG+++L +D+ + A + + + +K
Sbjct: 850 ALQKAETATKLKSEFLANMSHEIRTPMNGVIGMLQLL-KDSRLSDEQAHRVSIASSSAKS 908
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N +++ SKIEA ++EL +F+L LLE++ + K V+V+LD SV
Sbjct: 909 LLTLINDILDFSKIEADRIELEYIDFDLRNLLEKLAESVALDAQLKDVEVILDINAISV- 967
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
HV D +++QIL N++SN++KFT G I +RA + C S
Sbjct: 968 --SHVNSDPGRIRQILTNILSNAVKFTESGQIVIRAEL-------------------CDS 1006
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+ K GF L+ E+ DTG GI KDK S+F+ F Q +
Sbjct: 1007 E-----KIGFSQLNC---------------EIQDTGIGIAKDKVTSLFDAFSQGDASTTR 1046
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
G GLGL I + + +L++G++ + K GE G CF L+ + +
Sbjct: 1047 KYGGTGLGLSITRKLCNLLQGDVTVTSK-LGE-GSCFNVTCLVKNIAQ 1092
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 19/160 (11%)
Query: 942 SSLQQVAAQSDGKCSEKP----------LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEV 991
S+LQ+ + +D SE+P N L+VED+ + V +VL LG +V
Sbjct: 1220 STLQKSSEHTD-DASEQPTSLNDTDTTIFNDVHVLLVEDNPVNQMVALSVLKNLGVTADV 1278
Query: 992 CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE-QYDVHI 1050
NG +A L+ L+ K Y I+MDC+MP M+G+E T I+ E + +I
Sbjct: 1279 ASNGHDA-------LAALKAMDKPSDYAAIIMDCQMPEMDGYETTSKIKSGEAGKSAANI 1331
Query: 1051 PIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
PIIA+TA+AM G K + AGMD ++TKP++K+ + +K
Sbjct: 1332 PIIAMTANAMQGDEQKCLAAGMDDYMTKPIEKETVYRKLK 1371
>gi|398343867|ref|ZP_10528570.1| multi-sensor hybrid histidine kinase [Leptospira inadai serovar
Lyme str. 10]
Length = 856
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 137/288 (47%), Gaps = 52/288 (18%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R + +IG+ EL D++ + E +I+ + LL I+N +++
Sbjct: 342 KSEFLAMMSHEIRTPMNGVIGMTELLL-DSDLTGEKREYAEIIQKSGESLLSIINDILDY 400
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGSCHVRGDR 511
SKIE+G + L +EF++ + EE +D++ +KG+D++ +DP + GD+
Sbjct: 401 SKIESGTLSLESKEFSILETAEETLDLFRSSAAEKGIDLICHIDPNVPD-----RIIGDK 455
Query: 512 VKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEG 571
++L+Q+L NL NS+KFT +G + + A V KK
Sbjct: 456 LRLRQVLINLFGNSLKFTEKGEVFLSAEVSKKE--------------------------- 488
Query: 572 FDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631
++ F V DTG GIPK+KQ +F F QV ++ G GLGL
Sbjct: 489 -------------KSICTIRFSVRDTGIGIPKEKQKQLFNPFYQVDTSSTRKYGGTGLGL 535
Query: 632 GIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER--PDTD 677
I ++ +M G I + + +G F F + V E+ + PD +
Sbjct: 536 SISYRLIKMMGGRIWL--ESDINKGTTFSFEIQAEGVEEKNQVVPDIN 581
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 20/129 (15%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+ ED+ I L + +L KLG V NGK+ + + +E K +D ++MD
Sbjct: 736 LIAEDNEINLSLAKRILQKLGYHPVVAMNGKQVLNRL--------REAK---FDVVLMDV 784
Query: 1026 EMPVMNGWEATRLIR----KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MP M+G +AT++IR + E+ Y IIA+TA AM G + AGM+ +++KP+
Sbjct: 785 HMPEMDGIQATQVIRNTWPQSEQPY-----IIAMTAAAMQGDREICLRAGMNDYVSKPIV 839
Query: 1082 KDKLLDVVK 1090
++L+ ++
Sbjct: 840 FEELIHALR 848
>gi|88857651|ref|ZP_01132294.1| putative sensor protein [Pseudoalteromonas tunicata D2]
gi|88820848|gb|EAR30660.1| putative sensor protein [Pseudoalteromonas tunicata D2]
Length = 648
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 147/307 (47%), Gaps = 55/307 (17%)
Query: 360 IILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC 419
+I ++ A RE AL KQ+ ++AE K+ LA SH++R L +IG++EL
Sbjct: 117 VIDVSNAVARE----KALEKQVLERQRAEAA---KSAFLANMSHEIRTPLNGVIGMLELV 169
Query: 420 HEDANPGTD-LAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVV 478
++ P +D L + L + ++ LL I+N +++ SKIEAGK+++ EF L E+++
Sbjct: 170 ADE--PLSDKLQQFLQIASNSAESLLFIINDILDFSKIEAGKVDIDPVEFELLTFFEDII 227
Query: 479 DMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRA 538
+ KK + ++ D S L + VR D+ +++QIL NL+SN++KFT +G + V
Sbjct: 228 ASFIPAANKKAISLIF---DSSHLETTLVRADKQRVRQILVNLLSNAIKFTEQGEVVVEV 284
Query: 539 AVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTG 598
+ Q I + ++ K L DTG
Sbjct: 285 ------YLQKIDSQTAQLVCKVL----------------------------------DTG 304
Query: 599 KGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVC 658
GI +FE F Q + G GLGL I + + HLM GE+ ++ K +G C
Sbjct: 305 IGIEAHVIAKLFEPFQQSDSSISRRFGGTGLGLAIAKQLCHLMGGELTLSSK--VGKGSC 362
Query: 659 FRFNVLL 665
F F +LL
Sbjct: 363 FEFEILL 369
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 9/126 (7%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
N + LVVED+ I V L KLG ++ V +G+ A D++ +
Sbjct: 515 NHQCILVVEDNPINQIVAKECLKKLGYQYAVVEHGQAALDYL--------NTHPTPQINL 566
Query: 1021 IMMDCEMPVMNGWEATRLIRK-EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MDC+MP+M+G+ AT IR E ++ HIPI+ALTA+ + + + GM+ L KP
Sbjct: 567 ILMDCQMPIMDGFTATAKIRAGEATEFYQHIPILALTANVIESERERCLQIGMNDFLAKP 626
Query: 1080 LQKDKL 1085
+ D L
Sbjct: 627 ISLDIL 632
>gi|411118663|ref|ZP_11391043.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
gi|410710526|gb|EKQ68033.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
Length = 1050
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 132/282 (46%), Gaps = 53/282 (18%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP--GTDLAENLGLIRTC 439
A E AE + K+ LA SH++R L AIIG E+ EDA D+ +L IR+
Sbjct: 518 QAKEAAETANRAKSQFLANMSHELRTPLNAIIGYSEMLQEDAKDCGYEDIIPDLEKIRSA 577
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
K LLG++N ++++SKIEAGKM L E F+++ L+ EV + K G +V+ C
Sbjct: 578 GKHLLGLINDILDISKIEAGKMGLYLETFDVSHLITEVQATVQPLIDKNGNTLVVH-C-T 635
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
S +G+ H D K++Q+L NL+SN+ KFT G I++ AA ++
Sbjct: 636 SDIGTIH--ADLTKVRQVLLNLLSNASKFTDNGTITLTAARQEA---------------- 677
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
+ F V DTG G+ D+ + +F+ F Q E+
Sbjct: 678 -----------------------------EVTFTVSDTGIGMTADQLSRLFQPFTQADES 708
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
G GLGL I Q +M G I + + PG G FR
Sbjct: 709 TTRKYGGTGLGLAITQRFCQMMGGNITV-ESTPG-MGSVFRI 748
>gi|257059172|ref|YP_003137060.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
gi|256589338|gb|ACV00225.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
Length = 1090
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 144/295 (48%), Gaps = 29/295 (9%)
Query: 358 LFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVE 417
LF ++ +R+ +KQ A E A+ + K+ LA SH++R L AI+G +
Sbjct: 562 LFTAIVRDITERQQ--AEEALKQ--AKEAADAANRAKSEFLASMSHELRTPLNAILGFTQ 617
Query: 418 LCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEV 477
+ D + +NL +I + LL ++N ++EMSKIEAG+ F+L +LL+ +
Sbjct: 618 VMRRDRTLNPEHQQNLSIISRSGEHLLELINDILEMSKIEAGRTTFHSNSFDLYRLLDNL 677
Query: 478 VDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVR 537
M + +KG+ ++ + ++ D KL+Q+L NL+ N++KFT EG +++R
Sbjct: 678 EAMLHLKAQEKGLQLIFERTPEV---PQYLETDEGKLRQVLINLLGNAIKFTEEGGVTLR 734
Query: 538 AAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLD----ALHSVERNPNLLQFEFE 593
+ +S K FR +D AL + + + FE
Sbjct: 735 VKSEVRSRKGG-----------------FRESATLRTIDLEKPALTPIIADSEQIVITFE 777
Query: 594 VDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIA 648
V+D+G GI ++ + +F F Q ET QEG GLGL I + V LM G I+++
Sbjct: 778 VEDSGPGIAPEEVDQLFAAFGQT-ETGRQAQEGTGLGLPISRKFVQLMGGNISVS 831
Score = 40.0 bits (92), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 15/110 (13%)
Query: 981 VLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040
+L +G + NGKEA + + + P+ I MD MP+++G++AT+ I+
Sbjct: 891 LLSSMGFEVRQASNGKEALE-IWETWE---------PH-LIWMDMRMPIIDGYQATQRIK 939
Query: 1041 KEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ Q V +IALTA A + ++ AG D + KP +++ L + +
Sbjct: 940 ATTKGQGTV---VIALTASAFEEERNMVLSAGCDDFMRKPFREEVLWEKI 986
>gi|440683375|ref|YP_007158170.1| integral membrane sensor hybrid histidine kinase [Anabaena
cylindrica PCC 7122]
gi|428680494|gb|AFZ59260.1| integral membrane sensor hybrid histidine kinase [Anabaena
cylindrica PCC 7122]
Length = 739
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 154/345 (44%), Gaps = 75/345 (21%)
Query: 344 LLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFAL----- 398
LL+L GVIS+ + +L A R CA I+ NA E++ +T L
Sbjct: 207 LLLLQIFIGVISMTIMAVLAIVAENR----CAE-IRLQNANSDLEKRVFERTRDLQESEA 261
Query: 399 --------------------AKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
A SH++R L A+IG +L N +D EN G+I
Sbjct: 262 KAQELATKAEAANQAKSAFIANMSHELRTPLNAVIGFSQLMLRANNLPSDQYENAGIIYR 321
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
LL ++N ++++SKIEAGK L +FN +LL+++ DM + G++++ +
Sbjct: 322 SGDYLLTLINHILDLSKIEAGKATLNLHDFNFYRLLDDLEDMLHLRASDAGLELIFERTQ 381
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
C D VKL+Q+L NL++N++KFT G I V + KK +D+I N
Sbjct: 382 NVPQYIC---TDEVKLRQVLINLLTNAIKFTLHGSI-VLSVDKKDEDTEDVITLN----- 432
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
F + DTG GI + + +F+ F+Q +
Sbjct: 433 ---------------------------------FRLRDTGVGIARTELPKLFDAFIQAR- 458
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
QEG GLGL I + V LM G+I++ D + G +G F+F +
Sbjct: 459 AGREMQEGTGLGLAISRKFVQLMGGDISV-DSKLG-KGTTFQFYI 501
Score = 47.8 bits (112), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L V+D AI ++ +L LG + + NG+EA I + P+ I M
Sbjct: 532 KILTVDDKAINRQLLFKLLSPLGFEIKEASNGQEA----IAIWDEWE------PH-LIWM 580
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP+M+G+EAT+ I+ + +IALTA + + ++ AG D L KP +
Sbjct: 581 DMRMPIMDGYEATKHIKSTTKGNAT--AVIALTASVLEEEKAIVLSAGCDDFLRKPFSEH 638
Query: 1084 KLLDVV 1089
+ + +
Sbjct: 639 TIFEAL 644
>gi|50086083|ref|YP_047593.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1]
gi|49532059|emb|CAG69771.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1]
Length = 932
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 150/356 (42%), Gaps = 74/356 (20%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I A +QA + K+ LA SH++R L +I G + L N + + IR
Sbjct: 272 ITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQQNLSNEQRLYMQTIR 331
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S LL ++N V++ SKI+AGK+EL FNL + + +V+DM + +K +D+
Sbjct: 332 KSSAHLLALINDVLDFSKIDAGKLELETAAFNLEEAIFDVMDMLSPLAAQKHIDMAFYYG 391
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
D V GD +++KQIL NL+SN++KFT +G I VR ++ I
Sbjct: 392 DNI---PEIVIGDALRVKQILTNLISNAIKFTPDGEIIVRVRMEHDD------------I 436
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+CL LH F V D+G G+ + +FE F Q
Sbjct: 437 DQCL----------------LH------------FSVQDSGIGLSGTDRKKLFESFSQGD 468
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE---PGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +V LM G I D + P E+G F F
Sbjct: 469 ASVTRQFGGTGLGLAISKQLVQLMHGHIGFEDNQERAPTEKGSTFWFTAQFK-------- 520
Query: 675 DTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIEN 730
T E H ++PQ Q++ ++A +L+ Y+EN
Sbjct: 521 -TQEAHIIDHPEFPQL-------------------QVVSYLAHPATANILRHYLEN 556
Score = 86.3 bits (212), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 94/179 (52%), Gaps = 12/179 (6%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDA 972
Q +PN LN+ + A S + +Q ++ Q + + NG+ L V+D
Sbjct: 614 QMALEPNMLNE---YRARPLYQPLSRSALIQLLSNQPIFEQPPEQFNGRGLHVLAVDDHL 670
Query: 973 IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG 1032
L V A+L +L +G+EA + + + R E P+D + MD +MPVM+G
Sbjct: 671 PNLIVLEALLSELNVTTSKALSGQEALNIIEQ-----RIEQNEKPFDVVFMDIQMPVMSG 725
Query: 1033 WEATRLIRKEEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ TR IR E D + +PIIALTAHA+A K++ GMD ++TKP+Q ++++ ++
Sbjct: 726 IDTTRAIRSLESTLDTQMRLPIIALTAHALADEKQKLLKVGMDDYVTKPIQMEQIIHIL 784
>gi|333985386|ref|YP_004514596.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
gi|333809427|gb|AEG02097.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
Length = 1014
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 143/285 (50%), Gaps = 46/285 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A ++AE S K LA SH++R + AI+GL +L + NP L + L I T S
Sbjct: 267 LQAKDEAEAASRAKGLFLANMSHEIRTPMNAIVGLSDLALNN-NPPPKLLDYLQKIHTSS 325
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
L+ I N +++ SK+EAG++EL+ E F+L ++LE V++++ +KG+++VL+ D +
Sbjct: 326 LALMAITNDILDYSKVEAGRLELISEAFSLEEMLENVLNLFIVRAEEKGLEIVLE-LDHT 384
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ + GD ++L Q+L NLV N++KFT G I ++
Sbjct: 385 L--PPRLIGDALRLGQVLNNLVGNAVKFTEAGEIHIK----------------------- 419
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+ L ++H +F V D+G G+ ++ N +F+ F Q +
Sbjct: 420 -----------VEQLASVHGYA------TLKFSVRDSGIGMTHEQINHLFQAFTQADGSI 462
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I ++++ +M GE+ + + + G F F ++L
Sbjct: 463 TRRFGGTGLGLAISKNLIEMMGGELTVQSR--IDIGSVFEFTLIL 505
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 13/130 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
+ G L+VED+ I V L G V NG+E + + ++ K +D
Sbjct: 671 IRGAHILLVEDNEINQLVAREYLESTGLIVTVANNGREGVEAI--------RQSK---FD 719
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MP ++G EATR++R+++ D +PIIA+TA + AGM HL KP
Sbjct: 720 AVLMDLQMPELDGIEATRIVRRDKRFAD--LPIIAMTAAVQDKERTDCYSAGMTDHLGKP 777
Query: 1080 LQKDKLLDVV 1089
+ L++V+
Sbjct: 778 VLPQTLIEVL 787
>gi|224053503|ref|XP_002297846.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|190148359|gb|ACE63262.1| histidine kinase 3A [Populus trichocarpa]
gi|222845104|gb|EEE82651.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1020
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 159/318 (50%), Gaps = 22/318 (6%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL-AENLGLIR 437
K M T+QAE + K+ LA SH++R + ++G++ + + TDL A +R
Sbjct: 429 KMMELTKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMD-----TDLDANQQDYVR 483
Query: 438 TCS---KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL 494
T K L+ ++N V++ +KIE+GK+EL E +F+L ++++V+ ++ +KG+++ +
Sbjct: 484 TAQDSGKALVSLINEVLDQAKIESGKIELEEMQFDLRAIMDDVLALFSGKAHEKGIELAV 543
Query: 495 DPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKK---SFKQDIIA 551
DG + GD + +QI+ NL+ NS+KFT +GHI + ++ S + +
Sbjct: 544 YVSDGV---PEMLIGDPGRFRQIITNLMGNSIKFTKKGHIFLTVHPVEEVMDSIDVETES 600
Query: 552 SNRNVISKCLSKLFFRNKEGFDDLD----ALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
S+ N +S R+ GF + + +L+ V+DTG+GIP + Q
Sbjct: 601 SSLNTLSGLPVADRRRSCAGFKIFSREGSSHTLSPSSSDLVNLIVSVEDTGEGIPLEAQP 660
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
+F F+QV + G G+GL I + +V LM GEI A + G F F +
Sbjct: 661 RVFTPFMQVDPSISRKYGGTGIGLSISKCLVGLMNGEIGFASIP--DTGSTFTFTAVFRN 718
Query: 668 VCERERPDTDEEDPRTHN 685
C D+ ++ R N
Sbjct: 719 GCSNSN-DSKQQKQRIKN 735
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 12/130 (9%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G+K L+V+D+ + L V +A L K GA+ +GK A K+L + +D
Sbjct: 891 LVGRKILIVDDNKVNLIVAAAALKKYGAEVICADSGKMAI----KLLKPPHQ------FD 940
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
MD +MP M+G+EATR IR E + HIPI+A+TA + + GMD +++KP
Sbjct: 941 ACFMDIQMPEMDGFEATRRIRDMES--NGHIPILAMTADVIQATYEECQRCGMDGYVSKP 998
Query: 1080 LQKDKLLDVV 1089
+ ++L V
Sbjct: 999 FEAEQLYQEV 1008
>gi|383758756|ref|YP_005437741.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
gi|381379425|dbj|BAL96242.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
Length = 874
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 135/289 (46%), Gaps = 50/289 (17%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L AI+G L DA G AE L + + ++ LL +LN ++++
Sbjct: 498 KSAFLANMSHEIRTPLNAILGFTHLMRRDARDGVT-AERLARVDSAAQHLLAVLNDILDL 556
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEAG++EL E +F+L +L++ + K + + D D L +RGD ++
Sbjct: 557 SKIEAGRLELHEHDFSLRELVQRCTEQIAERAAAKSLALHADVGDTPDL----LRGDSMR 612
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
L Q L NL+SN++KFT G ++
Sbjct: 613 LAQALLNLLSNAVKFTERGAVA-------------------------------------- 634
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
LD + +ER L+ F V DTG GI ++ +F F Q + G GLGL I
Sbjct: 635 -LD-VRLLEREGPRLKLLFTVTDTGIGIAPAQREQLFSAFAQADASMARRFGGTGLGLAI 692
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVLL---TAVCERERPDTDEE 679
+ + LM GE+ + D GE G F F+V L +AV ERP D E
Sbjct: 693 TRRLAELMGGEVGV-DSRLGE-GSRFWFSVRLSGGSAVAACERPVVDGE 739
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 952 DGKCS-EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLR 1010
DG+ + G + L+ ED+ + V +L G + +V +G++A + L
Sbjct: 737 DGESELRRRFAGARVLLAEDNPVNQDVGRELLEMAGLQVDVASDGEQA--------ARLA 788
Query: 1011 KEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDA 1070
+G Y I+MD +MP ++G EATRLIR PI+A+TA+A +DA
Sbjct: 789 VDGD---YAAILMDMQMPGVDGLEATRLIRALPAH--AATPIVAMTANAFGEDRQACLDA 843
Query: 1071 GMDFHLTKPLQKDKLLDVV 1089
GMD H+ KP+ +L V+
Sbjct: 844 GMDDHVAKPVDPAQLYSVL 862
>gi|359436217|ref|ZP_09226335.1| sensor protein [Pseudoalteromonas sp. BSi20311]
gi|358029077|dbj|GAA62584.1| sensor protein [Pseudoalteromonas sp. BSi20311]
Length = 1111
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 166/348 (47%), Gaps = 67/348 (19%)
Query: 344 LLVLMFIAGVISLGLF----IILIAKAAKREMFLCA--ALIKQMNATEQ----------- 386
+L +M AG S+G+ + A E FL A ALI ++++EQ
Sbjct: 535 MLCVMIPAGSGSIGVVCAEQATVRAWTQNEEGFLIAIGALIGSLHSSEQRIETEAELVKA 594
Query: 387 ---AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDL 443
AE+ + K+ LA SH++R + ++G++ L + + ++ L ++ ++ L
Sbjct: 595 KEAAEQAVIAKSEFLASMSHEIRTPMNGVLGMLNLI-QTTSLDQQQRHHIKLAQSSAESL 653
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLG 503
LGI+N +++ SKIEAGK+++ +FNL +LL E+V+ + ++LD S
Sbjct: 654 LGIINDILDFSKIEAGKLDIENIQFNLPKLLGEIVESFALKAESNNTQLILDTTHVS--- 710
Query: 504 SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSK 563
+ + D +L+QIL NL++N++KFT G + V A ++K
Sbjct: 711 TSEIVCDPNRLRQILNNLIANAVKFTQNGQVLVTATIEKT-------------------- 750
Query: 564 LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH 623
LD N L E + DTG GI DKQ +F+ F Q +
Sbjct: 751 -----------LD-------NTTL---ECAIIDTGIGISLDKQKQLFDSFTQADASTTRQ 789
Query: 624 QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER 671
G GLGL IV+ + LM GE+++ + P E G F F+V +T+V ++
Sbjct: 790 YGGTGLGLAIVKQLCELMGGEVSV-NSLPNE-GSTFAFSVNITSVIDQ 835
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 9/116 (7%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+VED+ + V A+L + F++ +G++A + + A Y I+MDC
Sbjct: 988 LLVEDNKVNQVVAGALLKQAELTFDIAEDGEDALTKL--------NQATANTYQLILMDC 1039
Query: 1026 EMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+MP+M+G++AT IR+ Q + IPIIALTA+AM G K ++AGM+ +L+KPL
Sbjct: 1040 QMPIMDGYQATMAIREGLAGQENRAIPIIALTANAMHGDKEKCLNAGMNDYLSKPL 1095
>gi|302671320|ref|YP_003831280.1| two component system histidine kinase/response regulator hybrid
protein [Butyrivibrio proteoclasticus B316]
gi|302395793|gb|ADL34698.1| two component system histidine kinase/response regulator hybrid
protein [Butyrivibrio proteoclasticus B316]
Length = 942
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 141/271 (52%), Gaps = 44/271 (16%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ L+ SHD+R + AI+GL E+ D++ +A + IRT + LLG++N +++
Sbjct: 344 KSHFLSTMSHDIRTPMNAILGLNEMVLRDSHEEEIVAYSES-IRTAGRTLLGLINDILDF 402
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEAGKM+++ +++ A LL ++V+M KG+ LD D ++ + GD ++
Sbjct: 403 SKIEAGKMDIINVDYSFASLLNDLVNMVQVKAEDKGLAFNLD-VDRNI--PVILNGDEIR 459
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
+KQ++ N++SN++K+T EG I+ +A +K
Sbjct: 460 IKQVITNILSNAVKYTKEGSINFKATFEK------------------------------- 488
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
V+ +P+ + V DTG GI + +F+ F +++E+ + EG GLG+ I
Sbjct: 489 -------VKDSPDQIYLNVSVSDTGVGIKPEDMKRLFKAFERIEESKNRNVEGTGLGMSI 541
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
QS +++M I + + E G +G F F ++
Sbjct: 542 AQSFLNMMGSHIEV-ESEYG-KGSTFSFKLV 570
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D + L V +L + + + +G E +S R YD + +
Sbjct: 606 RLLVVDDTPVNLSVFENLLKRTKVQIDTATSGDEG-------ISLYRHR----QYDVVFL 654
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP +G E + +RK +V PI+ LTA+A++GV + AG + ++TKP+ D
Sbjct: 655 DHMMPDKDGIETLQEMRKIPGSVNVKTPIVCLTANAISGVRETYIKAGFNDYITKPIDPD 714
Query: 1084 KL 1085
+L
Sbjct: 715 RL 716
>gi|333892687|ref|YP_004466562.1| sensory box histidine kinase/response regulator [Alteromonas sp.
SN2]
gi|332992705|gb|AEF02760.1| sensory box histidine kinase/response regulator [Alteromonas sp.
SN2]
Length = 929
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 160/336 (47%), Gaps = 56/336 (16%)
Query: 341 SLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAK 400
+ + +++ I V L F+ +I KRE+ A + NAT+ K+ LA+
Sbjct: 375 TFQVYIIVTICCVAILLFFMFVITLKQKRELRELA--LNLQNATDA-------KSEFLAR 425
Query: 401 ASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGK 460
SH++R + AI+GL +L + + NL I S+ LLG++N V++ SKIEAGK
Sbjct: 426 MSHEIRTPVNAIVGLTKLTQKSV-VNEEQKTNLSQIEQSSQTLLGVINDVLDFSKIEAGK 484
Query: 461 MELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCN 520
+ + E F L +L+E+V+ ++ +K ++++ L V GD ++++Q+L N
Sbjct: 485 LNIESEVFELDKLVEQVIRLHGINAKEKRIELLQYVARDVPL---QVSGDALRIEQVLNN 541
Query: 521 LVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHS 580
L+SN++KFT EG + V +V KK + ++
Sbjct: 542 LLSNAIKFTDEGMVFV--SVNKKYSEHGVL------------------------------ 569
Query: 581 VERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHL 640
EF V DTG G+ ++ S+F+ F Q E+ G GLGL I + +V L
Sbjct: 570 ---------LEFSVKDTGIGLSTNQIESLFDAFTQADESITRKYGGTGLGLSICKHLVSL 620
Query: 641 MKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT 676
M GEI + K +G F F VL+ + +P T
Sbjct: 621 MGGEIWVESKLG--QGATFFFTVLVEQHNQLPQPTT 654
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 13/127 (10%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K L+VEDDAI KV L AK V NG A L +E +D ++
Sbjct: 808 KNILLVEDDAINRKVAKLFLADTKAKVSVAENGLIAMQM-------LEQEN---VFDLVL 857
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MD +MPVM+G A + IR E+ + +PI+A+TAHAM K GM+ H+ KP++
Sbjct: 858 MDMQMPVMDGLTAAQKIR---EELKLDVPIVAMTAHAMQTEIEKSFAVGMNAHIVKPVKP 914
Query: 1083 DKLLDVV 1089
+ L V+
Sbjct: 915 EYLYHVL 921
Score = 40.4 bits (93), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L+ K LVV+D + + + L ++ ++ GKEA ++ ++ +PYD
Sbjct: 660 LSDLKVLVVDDTMLSRQAIAEALLRININPDLATGGKEALMYLRTAVAS------NVPYD 713
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I++D +M ++G E +I +E Q +I + L+A+ + + + G++++L KP
Sbjct: 714 LIIIDWKMADIDGIELASIINQEFSQGKPNIAM--LSAYDIESLKTLGRPVGVEYYLQKP 771
Query: 1080 LQKDKL 1085
+ L
Sbjct: 772 VNSSSL 777
>gi|357126560|ref|XP_003564955.1| PREDICTED: histidine kinase 3-like [Brachypodium distachyon]
Length = 1019
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 165/338 (48%), Gaps = 29/338 (8%)
Query: 341 SLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAK 400
SL LV+ + G I F + + AK E M ++AE + K+ LA
Sbjct: 390 SLGTLVIALLTGYI----FHATVHRIAKVE----DDYQNMMELKKRAEAADIAKSQFLAT 441
Query: 401 ASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGK 460
SH++R + ++G++++ D + T + + + K L+ ++N V++ +KIE+GK
Sbjct: 442 VSHEIRTPMNGVLGMLQMLM-DTDLDTTQQDFVRTAQASGKALVSLINEVLDQAKIESGK 500
Query: 461 MELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV---VLDPCDGSVLGSCHVRGDRVKLKQI 517
+EL F+L + ++++ ++ +KG+++ V D +++G D +++QI
Sbjct: 501 LELEAVPFDLRIVCDDILSLFCGKAQEKGLELAVYVSDQVPQTLIG------DPGRMRQI 554
Query: 518 LCNLVSNSMKFTSEGHISVRAAVKKK---SFKQDIIASNRNVISKCLSKLFFRNKEGFDD 574
+ NL+SNS+KFT GHI + V ++ + N +S R+ E F
Sbjct: 555 ITNLMSNSIKFTERGHIYLTVHVVEEVMGCLEVKTGTHYTNTLSGYPVANRRRSWESFRL 614
Query: 575 LDA-LHSVER-----NPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLG 628
D LHS E P+ ++ V+DTG GIP + Q IF ++QV + G G
Sbjct: 615 FDMDLHSSEMPFTPVTPDTIRLIISVEDTGAGIPFEAQYRIFTPYMQVGPSIARIHGGTG 674
Query: 629 LGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
+GL I + +VHLMKGEI K G F F +LT
Sbjct: 675 IGLSISKCLVHLMKGEIGFVSKP--HVGSTFSFTAVLT 710
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 27/143 (18%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L+ K+ +VV+D+A+ LKV + L K GA +GK+A ++ +D
Sbjct: 872 LHKKQIIVVDDNAVNLKVAAGALKKYGAVVTCADSGKKAIAYLS----------PPHIFD 921
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHI-----------------PIIALTAHAMAG 1062
MD +MP M+G++AT+ IRK E + + I PI+A+TA +
Sbjct: 922 ACFMDIQMPEMDGFQATKEIRKMESKLNEKIESGDVPPECVNVRRWRTPILAMTADVIQA 981
Query: 1063 VASKIVDAGMDFHLTKPLQKDKL 1085
+ + MD +++KP + ++L
Sbjct: 982 TYEECLKCEMDGYVSKPFEGEQL 1004
>gi|434393415|ref|YP_007128362.1| multi-sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
gi|428265256|gb|AFZ31202.1| multi-sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
Length = 1079
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 140/297 (47%), Gaps = 47/297 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP-GTDLAENLGLIRTCSK 441
A AE + K+ LA SH++R + AI+G+ L + P E L IRT S
Sbjct: 423 AKTDAEAATRVKSQFLANMSHEIRTPMNAIVGMANLLL--STPLSQQQKEFLETIRTSSN 480
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDG 499
LL +LN V+E+SKIE+GK+EL + FNL +EE V++ +K +++ ++ P
Sbjct: 481 VLLILLNDVLELSKIESGKLELEQRAFNLRTCVEEAVEILAFKAAEKNIELAYIIHPDTP 540
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
S ++ GD +L+QIL NL+SNS+KFT +G + V ++ +
Sbjct: 541 S-----NIVGDVTRLRQILVNLLSNSVKFTHQGEVVVSVTAREL---------------E 580
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
C +KL R + +F V DTG GIP + +F+ F Q +
Sbjct: 581 CANKLAGR--------------------YEIQFAVKDTGIGIPIETIEHLFQAFSQGDAS 620
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT 676
G GLGL I + + +M+G I + + ++G F F + T PD+
Sbjct: 621 ITREYGGTGLGLAIAKQLCEMMQGRIWVETQ--ADQGSTFYFTIATTIDTSVFPPDS 675
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 12/122 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ + K+ +L LG +V NG E D LR++ YD ++M
Sbjct: 816 RILLAEDNIVNQKIALHILQSLGYHADVASNGLEVLD-------TLRRQN----YDVVLM 864
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G ATR I +E ++ IIA+TA+AM + + AGM+ +++KP+Q +
Sbjct: 865 DVQMPKMDGLTATRQI-VQEFGAEIRPRIIAMTANAMQEDKEECLAAGMNDYISKPIQVE 923
Query: 1084 KL 1085
+L
Sbjct: 924 EL 925
>gi|428211707|ref|YP_007084851.1| signal transduction histidine kinase [Oscillatoria acuminata PCC
6304]
gi|428000088|gb|AFY80931.1| signal transduction histidine kinase [Oscillatoria acuminata PCC
6304]
Length = 713
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 185/405 (45%), Gaps = 60/405 (14%)
Query: 334 VSRNNKLSLMLLVLMFIAGVIS-LGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSM 392
++R+ + + + L+ G + L L I+L+A + R L I++ A ++
Sbjct: 119 LARDPQQAYEPIALVLPDGQVRFLDLHILLVAHS--RLFQLANQTIEEKKDAAIAANRA- 175
Query: 393 NKTFALAKASHDVRASLAAIIGLVELCHEDANPG--TDLAENLGLIRTCSKDLLGILNSV 450
K+ LA SH++R L AI+G E+ EDA DL+ +L I K LLGI+N +
Sbjct: 176 -KSQFLANMSHELRTPLNAILGYSEMLQEDAEDTGQEDLSLDLQKIHGAGKHLLGIINDI 234
Query: 451 MEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKK---GVDVVLDPCDGSVLGSCHV 507
+++SKIEAG+MEL E F++ L+EVV + I+K + V P GS+
Sbjct: 235 LDLSKIEAGRMELYLEPFDIESTLQEVVSTIEPL-IEKNSNAIAVRYAPELGSMW----- 288
Query: 508 RGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFR 567
D K++Q L NL+SN+ KFT G IS+ QD S + V+ LS+
Sbjct: 289 -ADLTKVRQNLFNLLSNAAKFTENGTISLEVTRIPNPQPQD---SAQAVLCAVLSQ---P 341
Query: 568 NKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGL 627
+ G+ A H+ F++ DTG G+ ++ N +FE F Q + G
Sbjct: 342 PESGYLKPGASHAESD-----WICFKIKDTGIGMTPEQINRLFEAFTQADASTTRKYGGT 396
Query: 628 GLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA------VCERER-------- 673
GLGL I + +M G+I + +E G F +LL A E+E
Sbjct: 397 GLGLAISKRFCEMMGGDITVTSQE----GEGSTFTMLLPAQVKTLPTLEQESSKADLEAL 452
Query: 674 PDTD------EEDPRTHNDWPQTGLHQHFAS--FWGSAAKSEGSQ 710
PDT ++DP H L Q F S WG A S G +
Sbjct: 453 PDTGKTVLVIDDDPTVHE------LMQRFLSKEGWGVAVASNGDR 491
Score = 43.5 bits (101), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Query: 943 SLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHV 1002
+L+Q ++++D P GK LV++DD V ++ L K G V NG +
Sbjct: 439 TLEQESSKAD--LEALPDTGKTVLVIDDDPTVHELMQRFLSKEGWGVAVASNGDRGLE-- 494
Query: 1003 CKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAG 1062
L KE L D I +D MP +GW ++ + E D+ ++ + + G
Sbjct: 495 ------LAKE---LHPDAITLDVMMPHQDGWSVLCALKADPELADIPTIVLTMMDNKPMG 545
Query: 1063 VASKIVDAGMDFHLTKPLQKDKLL 1086
+A G ++ KP+ + +L+
Sbjct: 546 MA-----LGASDYMMKPIDRHRLI 564
>gi|333995699|ref|YP_004528312.1| sensor histidine kinase/response regulator [Treponema
azotonutricium ZAS-9]
gi|333736045|gb|AEF81994.1| sensor histidine kinase/response regulator [Treponema
azotonutricium ZAS-9]
Length = 848
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 138/282 (48%), Gaps = 49/282 (17%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
E AE+ K+ LA SH++R + IIG+VEL +D + + +E ++ ++ LL
Sbjct: 145 EIAEKAMEAKSQFLANMSHEIRTPIQTIIGMVELL-QDTSLDHEQSEYSSQVKFSAEVLL 203
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-PCDGSVLG 503
++N +++ SKIEAGKMEL +F+L Q +E+ V+M +KG+ + D P + ++
Sbjct: 204 SLINDILDFSKIEAGKMELEHIDFDLEQTIEQAVEMISMEAHRKGLSIATDVPLEACII- 262
Query: 504 SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSK 563
+RGD K +QIL NL N++KFT EG ++V A + + ++ I S
Sbjct: 263 ---IRGDPNKFRQILINLAKNAVKFTKEGGVTVTAQLTELGKQEAIRVS----------- 308
Query: 564 LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH 623
V DTG GI ++ ++ +F F+Q +
Sbjct: 309 ------------------------------VHDTGIGISEEARSRLFTTFMQADASNTRR 338
Query: 624 QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I +++V LM G I + E G G FRF + L
Sbjct: 339 FGGTGLGLAISKNLVELMGGIIEMVPGEEG--GSVFRFTIPL 378
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 19/124 (15%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD- 1019
N L+ ED + K+ + ++ KLG + +G++A + KAL +
Sbjct: 558 NKPTVLIAEDHPVNQKLFAMIMDKLGYPSILADDGQDAME-------------KALANNI 604
Query: 1020 -YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
I MD +MP MNG+EAT +RK+ PIIA+TA A A + G+D LTK
Sbjct: 605 ALIFMDIQMPRMNGYEATENLRKK----GFKKPIIAVTASAFADEREHCLSIGIDDILTK 660
Query: 1079 PLQK 1082
P ++
Sbjct: 661 PFKR 664
>gi|428772817|ref|YP_007164605.1| GAF sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
gi|428687096|gb|AFZ46956.1| GAF sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
Length = 824
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 135/270 (50%), Gaps = 47/270 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN-LGLIRTCSK 441
A E+AE ++ K+ LA SH++R + AI+G L + + +LA N L I + +
Sbjct: 331 AKEEAEIANLTKSEFLANISHEIRTPMNAILGFSNLLKDIVD--NNLAHNYLNAISSSGE 388
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
+LL ++N ++++SKIEAGKM++ E N+ LLEE+ +++ + +K +D++LD D
Sbjct: 389 NLLALINDILDLSKIEAGKMQVEYESLNVRTLLEEITNIFKYQSQQKNIDLILDIKDDFP 448
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+G + + ++L+QIL NL+ N+ KFT +G + + A C
Sbjct: 449 VG---IVFEPIRLRQILFNLIGNATKFTEKGFVRISAG--------------------C- 484
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQ---FEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
H+ ER+ L+ F + DTG GIP+ + IFE F Q
Sbjct: 485 -----------------HNGERDQIGLKNCGFYISIQDTGIGIPEQDRERIFESFTQQDG 527
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIA 648
G GLGL I + +V ++ G I ++
Sbjct: 528 KTNRKYGGTGLGLAITKKLVTMLDGSITVS 557
>gi|334131211|ref|ZP_08504977.1| Two-component hybrid sensor and regulator [Methyloversatilis
universalis FAM5]
gi|333443841|gb|EGK71802.1| Two-component hybrid sensor and regulator [Methyloversatilis
universalis FAM5]
Length = 758
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 141/293 (48%), Gaps = 54/293 (18%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
+A E+AE+ S K LA SH++R + IIG+ ++ D + E+LG +++ +
Sbjct: 378 SAKEEAEKASRAKAAFLATMSHEIRTPMNGIIGMTDVVL-DGPLSDEQRESLGWVKSSAD 436
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV--DVVLDPCDG 499
L+GILN +++ SK++AG+M L +F+L L + + ++ KG+ D L+P G
Sbjct: 437 SLMGILNDILDYSKVDAGQMTLESVDFDLPALFADTLALFSAQASAKGIALDSRLEP--G 494
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
L V GD ++++Q+L NLVSN++KFT G ++V A A R +++
Sbjct: 495 LPL---QVMGDPLRVRQVLSNLVSNAIKFTERGGVTVTLAPS---------ADGRVLLT- 541
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
V DTG GI DK +F F Q +
Sbjct: 542 ----------------------------------VRDTGIGIAADKLGQVFAPFSQADSS 567
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
+ G GLGL IV +V LMKG I++ EPG+ G F+ + L A R+
Sbjct: 568 TTRNYGGTGLGLSIVSRLVDLMKGRISV-QSEPGQ-GTLFQVELPLPAARNRD 618
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 11/124 (8%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+ ED + + +L + G + +G +A + C+ G+ +D ++MD
Sbjct: 638 LIAEDTPVNQVLLKRLLSRHGVRITQATDGAQAVE-ACR--------GRH--FDLVLMDV 686
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MPVM+G EATR IR ++ Y PIIA+TA+A+ + +AGMD ++KP +L
Sbjct: 687 QMPVMDGLEATRHIRALDDVYWQRAPIIAITANALEEDRQRCREAGMDDFISKPFHARQL 746
Query: 1086 LDVV 1089
++ +
Sbjct: 747 IETL 750
>gi|169334946|ref|ZP_02862139.1| hypothetical protein ANASTE_01352 [Anaerofustis stercorihominis DSM
17244]
gi|169257684|gb|EDS71650.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Anaerofustis stercorihominis DSM 17244]
Length = 794
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 147/303 (48%), Gaps = 52/303 (17%)
Query: 359 FIILIAKAAKREM--FLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLV 416
F++L ++ ++E L ALI EQA R K+ L SHD+R + AI+G+V
Sbjct: 385 FMVLTDESEEQEKKKVLEEALI----TAEQANRA---KSEFLTSMSHDIRTPMNAIVGMV 437
Query: 417 ELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEE 476
+ + + + +A+ L I S+ L+ ++ V++MS+IE+GK+EL +E FNL LL+E
Sbjct: 438 NIAYSNLDDKKKVADCLDKITLSSEHLMELIQGVLDMSQIESGKLELCKENFNLTSLLKE 497
Query: 477 VVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISV 536
+++ ++KG+D+ LD + + V GD +++ QIL NL++N++KFT G
Sbjct: 498 AYEIFKGQALEKGLDLTLDM---NKIKHSDVNGDMLRINQILMNLINNALKFTPAG---- 550
Query: 537 RAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDD 596
GF ++ A + V+D
Sbjct: 551 ----------------------------------GFVEIKAEEVYCEEEGYGIYNISVND 576
Query: 597 TGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERG 656
G GI + + +F+ F + + + + EG GLGL IV ++ LM G I + ++ +G
Sbjct: 577 NGIGIAPEFIDKLFDPFERAERSTVSKIEGSGLGLSIVNRLISLMNGTIDVVSEQG--KG 634
Query: 657 VCF 659
CF
Sbjct: 635 SCF 637
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
N + L+VED+ + +++ +LG + + NG EA + K YD
Sbjct: 666 FNKYRVLLVEDNELNMEIAKELLGMVDLNIDEAWNGTEAVEKF--------KNSSEYYYD 717
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
I+ D +MP MNG+E + IR E ++ D H IPIIA+TA A + GM+ ++TK
Sbjct: 718 MIITDIQMPNMNGYEEAKTIR-ELDRADAHSIPIIAMTADAFQASMERAEAVGMNGYITK 776
Query: 1079 PLQKDKLLDVVK 1090
P++ + L++ +K
Sbjct: 777 PVEYNNLINTLK 788
>gi|407686456|ref|YP_006801629.1| PAS signal transduction protein [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407289836|gb|AFT94148.1| PAS signal transduction protein [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 1099
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 146/307 (47%), Gaps = 62/307 (20%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
K A ++A+ + K+ LA SH++R + AIIGL L E +N E L ++
Sbjct: 396 KLQKAYDEAQSANKAKSDFLATMSHEIRTPMNAIIGLTHLALE-SNNNEQRQEYLEKVQR 454
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
S LL ++NS+++ SK+EA K+E+++E F L + ++++ ++ +K + ++ D
Sbjct: 455 SSTALLDLMNSILDFSKVEADKIEIIDEPFTLTKTIDKLAQVFQVKAQQKQLQLLFDI-- 512
Query: 499 GSVLGSCHV----RGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
CH RGD K+ Q+L NL+SN++KFT+ GH+
Sbjct: 513 -----RCHTNLQCRGDSEKIYQVLLNLLSNAIKFTANGHV-------------------- 547
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
+ +VE+ N Q F V DTG GI + ++ +F+ FV
Sbjct: 548 -----------------------ILTVEKREN--QLVFSVSDTGMGIGEQVKSKLFKAFV 582
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
Q + G GLGL I + +V LM G++++ + ++G CF F + +C E P
Sbjct: 583 QADASISREYGGTGLGLAICKRLVELMGGDLSL--ESEVDKGSCFSFAL---PICSDEDP 637
Query: 675 DTDEEDP 681
T + P
Sbjct: 638 GTGPQLP 644
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 19/141 (13%)
Query: 954 KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEG 1013
K + L K LVV+DDAI ++++ +L LG V +G++A L ++ K
Sbjct: 782 KWRTRRLLNKHVLVVDDDAISVEISQQILSDLGINVAVASSGEQAL-----ALCEMSK-- 834
Query: 1014 KALPYDYIMMDCEMPVMNGWE-ATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGM 1072
+D I++DC +P ++G+E A +L +K D + PIIAL+A + + AGM
Sbjct: 835 ----FDAILLDCYLPGISGYEVAEQLTQK----TDWYTPIIALSADESQEASESALTAGM 886
Query: 1073 DFHLTKPLQKDKLLDVVKSID 1093
HL KP D ++V +ID
Sbjct: 887 CQHLVKPATAD---EIVHTID 904
>gi|153870595|ref|ZP_01999963.1| signal transduction histidine kinase [Beggiatoa sp. PS]
gi|152072938|gb|EDN70036.1| signal transduction histidine kinase [Beggiatoa sp. PS]
Length = 1313
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 135/267 (50%), Gaps = 39/267 (14%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE + K+ LA SH++R L I+G ++ + D + E + +I+
Sbjct: 825 LEAKEVAESANQAKSTFLASMSHELRTPLNGILGYTQIFNHDKSLTEKQQEGIQIIQRSG 884
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL ++N ++++SKIE+GK+EL+ +F + L+++ D++ +K V+ + +P S
Sbjct: 885 EHLLTLINDILDLSKIESGKLELMPTDFRFSNFLKDIADLFRMRAEQKNVEFIYEPL--S 942
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
L + V D +L+Q+L NL+SN++KFT EG +S K Q + A
Sbjct: 943 QLPTA-VYADEKRLRQVLLNLLSNAVKFTQEGQVSF------KVIYQSVPAP-------- 987
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
S E N N ++ FEV+D G+GI D IF F QV + +
Sbjct: 988 -------------------STEENKNTIR--FEVEDAGQGIAPDDLERIFLPFQQVGDQS 1026
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAI 647
EG GLGL I + +V +M G++ +
Sbjct: 1027 -EQVEGTGLGLPISKKLVEMMAGQLQM 1052
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K LVV+D V + +L LG +G++A + + + D I+M
Sbjct: 1105 KILVVDDKWENRVVLTNILNPLGFDILEAHDGQDALEKIEQFHPDA-----------IIM 1153
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MPVM+G E TR +R + +Q+ + IIAL+A+ + + AG LTKP+ +
Sbjct: 1154 DLKMPVMDGLECTRYLR-QLDQFQQTV-IIALSANVFEHQQKESLKAGCHAFLTKPIDTE 1211
Query: 1084 KLLDVV 1089
K L V+
Sbjct: 1212 KFLQVL 1217
>gi|46201957|ref|ZP_00208322.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 413
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 139/293 (47%), Gaps = 57/293 (19%)
Query: 376 ALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL 435
+ ++ A ++AE S K+ LA SH++R L IIG EL ++A + EN +
Sbjct: 168 SFVRLDEARKRAEEASRMKSEFLANMSHELRTPLNGIIGFSELIRDEA-ADDETRENADI 226
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--- 492
I S+ LL ++NS+++++KIEAG M L ++ LA L+ E +++ KG+ +
Sbjct: 227 IEKSSRHLLELVNSILDIAKIEAGAMTLAVQDVKLAPLVAEAASVHHSAAQAKGITLSSQ 286
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
V D C + +R D ++L+QI+ NL+SN++KFT +G +S+
Sbjct: 287 VSDNCPET------IRADPLRLRQIIHNLLSNAVKFTEKGEVSL---------------- 324
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
SVE P L F V DTG GIP+ ++IFE+
Sbjct: 325 ---------------------------SVELEPGHLI--FRVSDTGAGIPEGMLHAIFEK 355
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
F QV G GLGL + + +V LM G I + + +G F F + L
Sbjct: 356 FRQVDSFLTRSHSGTGLGLTLARHLVELMGGTIGV--QSTVGKGTVFHFTLPL 406
>gi|343511277|ref|ZP_08748451.1| PAS domain-containing protein [Vibrio scophthalmi LMG 19158]
gi|342798610|gb|EGU34209.1| PAS domain-containing protein [Vibrio scophthalmi LMG 19158]
Length = 1816
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 151/301 (50%), Gaps = 63/301 (20%)
Query: 365 KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
K A+RE+ L A ++AE + K+ LA SH++R + AIIG+ L +
Sbjct: 973 KEAERELML---------AKQKAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLAMQ--- 1020
Query: 425 PGTDL----AENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDM 480
TDL A+ + I+T ++ LLGI+N +++ SKIEAGK++L + EF+L ++ +V +
Sbjct: 1021 --TDLNKKQADYVNKIQTSAESLLGIINDILDFSKIEAGKLDLEQTEFDLESTIDNLVQV 1078
Query: 481 YYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAV 540
+K +++++D D + H+ GD ++L QIL NL +N++KFT +G I V+A +
Sbjct: 1079 VSQRTQEKDLELLVD-LDPQL--PTHLIGDPLRLGQILLNLANNAIKFTDQGEIIVKAEL 1135
Query: 541 KKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKG 600
+E++ + L+ F V DTG G
Sbjct: 1136 ----------------------------------------IEQSDDKLEARFSVSDTGIG 1155
Query: 601 IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
+ K++ +F+ F Q + G GLGL I +++ +M+G I + + E G+ G F
Sbjct: 1156 MTKEQMARLFQSFSQADASTTRKYGGTGLGLTISKTLAEMMEGSIWV-ESESGQ-GSTFF 1213
Query: 661 F 661
F
Sbjct: 1214 F 1214
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 75/125 (60%), Gaps = 13/125 (10%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G + L+VED+AI ++ + +L +G NG+EA D V + +D +
Sbjct: 1389 GARILLVEDNAINQEIATELLQMVGMDVTTANNGQEAVDLVG-----------SQDFDLV 1437
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MD +MPVM+G++AT+ IR QYD +PIIA+TA+AM+G K + AGM+ HL KP+
Sbjct: 1438 LMDIQMPVMDGYQATQAIRNTG-QYD-DLPIIAMTANAMSGDKEKCLAAGMNDHLPKPIN 1495
Query: 1082 KDKLL 1086
+++
Sbjct: 1496 PNQVF 1500
>gi|75910827|ref|YP_325123.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
gi|75704552|gb|ABA24228.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
Length = 1672
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 140/298 (46%), Gaps = 30/298 (10%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L AI+G ++ D D +NL +I + LL ++N V+EM
Sbjct: 1146 KSEFLANMSHELRTPLNAILGFTQIMSHDKTLSKDNQQNLTIINRAGEHLLDLINDVLEM 1205
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEAG+ L F+L LL+ + +M KG+ + + + H++ D K
Sbjct: 1206 SKIEAGRTTLNINNFDLIHLLDNLQEMMQGRAKAKGLHLQFEYAPNI---AQHIQADESK 1262
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS----------- 562
L+Q+L N++ N++KFT G I +R + + + S R ++ + L
Sbjct: 1263 LRQVLLNILGNAIKFTETGSIILRVKMGDGDWG---LVSQRGLLYETLREGGFPHVGVSL 1319
Query: 563 --KLFFRNKEGFDDLDALHSVERNPNLLQFE--------FEVDDTGKGIPKDKQNSIFEE 612
K+ N EG + D + PN QF FE+ DTG GI D+ +FE
Sbjct: 1320 PVKVQLTNSEGGTE-DETKTHLSTPN-TQFPITNPRFLIFEIQDTGIGICDDEVGVLFEA 1377
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
F Q E Q+G GLGL I + V LM G+I+I+ FR V L + E
Sbjct: 1378 FGQT-EAGRKSQQGTGLGLAISRKYVQLMGGDISISSTVGVGSTFSFRIQVGLVSAHE 1434
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIP-----IIALTAHAMAGVASKIVDAGMDFH 1075
I+MD MP+M+G+EAT IR E + IP IIALTAHA ++ G D
Sbjct: 1501 ILMDMRMPIMDGYEATHFIRSAETENHTTIPNPHTIIIALTAHAFEEQRQAMLQVGCDDL 1560
Query: 1076 LTKPLQKDKLLD 1087
+ KP + ++L+
Sbjct: 1561 INKPFSEKEILE 1572
>gi|159901028|ref|YP_001547275.1| integral membrane sensor signal transduction histidine kinase
[Herpetosiphon aurantiacus DSM 785]
gi|159894067|gb|ABX07147.1| integral membrane sensor signal transduction histidine kinase
[Herpetosiphon aurantiacus DSM 785]
Length = 386
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 135/270 (50%), Gaps = 53/270 (19%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGT--DLAENLGLIRT 438
+ A E+AE + +K+ LA SH++R L AIIG EL EDA + ++L IR
Sbjct: 142 LAAKEEAELANRSKSQFLAMMSHELRTPLNAIIGYSELLQEDAEADQLPNYVQDLSTIRN 201
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD-VVLDPC 497
LLG++N V+++SKIEAG+MEL ++F +L+ + +++Y I K + +VLD
Sbjct: 202 AGVHLLGLINDVLDLSKIEAGRMELFGQDFRAIELIND-LELYIQPQIAKNNNRLVLDVA 260
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
LG H D KL+QIL NL++N+ KFT +G I++RA
Sbjct: 261 KD--LGVMH--SDLQKLRQILLNLLTNASKFTQQGTITLRAK------------------ 298
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
D D LH FEV DTG G+ + ++F+ FVQ +
Sbjct: 299 ---------------RDGDWLH------------FEVVDTGIGMSSEHVANLFQPFVQAE 331
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
++ G GLGL I +S+ L+ G+I +
Sbjct: 332 QSTAARFGGTGLGLAISRSLARLLGGDIMV 361
>gi|428216794|ref|YP_007101259.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427988576|gb|AFY68831.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 797
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 133/274 (48%), Gaps = 54/274 (19%)
Query: 394 KTFALAKASHDVRASLAAIIGLVEL-CHEDANPGT-DLAENLGLIRTCSKDLLGILNSVM 451
K+ LA SH++R + A++G+ EL D P D EN IR LL ++N ++
Sbjct: 270 KSLFLANMSHEIRTPMNAVLGMTELMLGTDLTPEQFDFVEN---IRISGDSLLNLINEIL 326
Query: 452 EMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDGSVLGSCHVRG 509
++SK+EAG+M+L F+L +EEV + KG+++ ++DP V G
Sbjct: 327 DLSKLEAGEMQLERLSFDLVSCVEEVATLLAAQAHNKGLEITTLIDPA-----IPWRVSG 381
Query: 510 DRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNK 569
D +L+QIL NL+ N++KFT+ G +++ N++S+
Sbjct: 382 DSARLRQILTNLLGNAIKFTNAGEVAIEV----------------NILSQ---------- 415
Query: 570 EGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629
+L++ F V DTG GI + Q+ +F F QV + G GL
Sbjct: 416 --------------QHDLIKLAFAVIDTGIGISQPNQDKLFMPFSQVDASTTRRYGGTGL 461
Query: 630 GLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
GL I + +VHLM GEI + + E GE G F FN+
Sbjct: 462 GLAICKQLVHLMGGEIGV-ESELGE-GTRFWFNL 493
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 74/126 (58%), Gaps = 12/126 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+ ED+ + KV +L KLG K +V +NG++ + + YD I+M
Sbjct: 668 KILLAEDNLVNQKVALKMLEKLGYKADVAQNGQQVLQLMART-----------NYDLILM 716
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
DC+MP+++G+ T+ IR E + + H I+A+TA+AM K +DAGMD +++KP+ K
Sbjct: 717 DCQMPLLDGYATTQEIRNREGE-NRHTVIVAMTANAMKEDRQKCLDAGMDDYISKPVSKK 775
Query: 1084 KLLDVV 1089
+ D++
Sbjct: 776 DIQDIL 781
>gi|34496337|ref|NP_900552.1| sensor/response regulator hybrid protein [Chromobacterium violaceum
ATCC 12472]
gi|34330295|gb|AAQ58556.2| probable sensor/response regulator hybrid protein [Chromobacterium
violaceum ATCC 12472]
Length = 902
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 137/289 (47%), Gaps = 50/289 (17%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN--LGLI 436
K A E+AE + K+ LA SH++R + AIIGL L G D + L I
Sbjct: 153 KLKQAMEEAESATRAKSDFLANMSHEIRTPMNAIIGLAHLA---LRTGLDPKQRDYLQKI 209
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
K LLGI+N +++ SKIEAGK++L EF+L ++L+ + + KG++++ D
Sbjct: 210 HNSGKHLLGIINDILDFSKIEAGKLDLENAEFDLERVLDNLAALLGEKAEAKGLELIFDI 269
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
G L + GD ++L QIL N +N++KFT G ++VRA ++
Sbjct: 270 GPG--LDRSLI-GDPLRLGQILINYANNAVKFTERGEVTVRARCRE-------------- 312
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
ER +LL FEV DTG G+ +++ +F+ F Q
Sbjct: 313 -------------------------ERGDSLL-LHFEVSDTGIGLSAEQKAKLFQSFQQA 346
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ G GLGL I + + +M GE+ + D EPG +G F F L
Sbjct: 347 DTSTSRKYGGTGLGLAISRKLAEMMGGEVGV-DSEPG-KGSTFWFTARL 393
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 13/135 (9%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
PL G + L+ ED+ + +V + +L + V NG+EA +A P+
Sbjct: 554 PLRGMRVLLAEDNELNQQVATELLSAADIEVTVASNGEEALSLA-----------EAQPF 602
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D +MD +MPVM+G EATR +R+ PI+A+TA+AM+G + ++AGM+ H+TK
Sbjct: 603 DLALMDMQMPVMDGLEATRRLRRLASWG--KRPILAMTANAMSGDRERCLEAGMNDHVTK 660
Query: 1079 PLQKDKLLDVVKSID 1093
P+ DKL +K D
Sbjct: 661 PIDPDKLFAALKRWD 675
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
+ ++ LVV+D ++ + L + + + +G++A + V + D + Y+
Sbjct: 408 MRNRRALVVDDSRAAREILAEQLRGMTFRVDEAEDGEQALERVEQAERDGDR------YE 461
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
+ +D MP M+G EA R + + + H + +T + V DAG++ L KP
Sbjct: 462 VVFLDWRMPRMDGIEAARRLMRHDAALRPH--RVMVTGYGREEVFRLAEDAGIEMTLIKP 519
Query: 1080 LQKDKLLD 1087
+ L D
Sbjct: 520 VSASVLFD 527
>gi|303326050|ref|ZP_07356493.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio
sp. 3_1_syn3]
gi|302863966|gb|EFL86897.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio
sp. 3_1_syn3]
Length = 1411
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 136/279 (48%), Gaps = 55/279 (19%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
NA A S KT L+ SHD+R + AI+G+ EL + + E+L +IRT S+
Sbjct: 1018 NALTLAREASQAKTDFLSSMSHDIRTPMNAIVGMTELALARRDNPVQIDESLSVIRTASE 1077
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG------VDVVLD 495
LL ++N +++MS+IE+G + LV+E F+ + +E++V + KKG V D
Sbjct: 1078 HLLRLINDILDMSRIESGHIVLVKELFSQREEVEKIVTRALALAGKKGQTFSHSFQVRHD 1137
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
C G VL ++ QIL NL+SN++KFT EG
Sbjct: 1138 KCIGDVL----------RIHQILENLISNAVKFTPEG----------------------G 1165
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
+S +++L ++N + + F V DTG GI + IFE F +
Sbjct: 1166 RVSLAVTEL----------------PQKNEQIGWYRFVVADTGIGISPEDIPHIFEVFFR 1209
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE 654
V+ +GH EG GLGL I++++V G I + + EPG+
Sbjct: 1210 VENLRVGHTEGTGLGLSIIKNIVDYKGGTIKV-ESEPGQ 1247
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 14/133 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGK---EAFDHVCKILSDLRKEGKAL 1016
++G + L+VED+ + V +L G + NGK EAF+
Sbjct: 1281 ISGLRVLLVEDNEVNQLVAQRILESEGVTVSIAANGKAGWEAFE-----------SSAPE 1329
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
+D + MD +MPVM+G+EATR IR+ IP+IA+TA+A AG + ++AGM+ H+
Sbjct: 1330 AFDAVFMDIQMPVMDGYEATRAIRRSGHARAADIPVIAMTANAFAGDVRRCLNAGMNAHI 1389
Query: 1077 TKPLQKDKLLDVV 1089
KP++ KL +++
Sbjct: 1390 AKPIEPRKLFELL 1402
>gi|334119626|ref|ZP_08493711.1| ATP-binding region ATPase domain protein [Microcoleus vaginatus
FGP-2]
gi|333457788|gb|EGK86409.1| ATP-binding region ATPase domain protein [Microcoleus vaginatus
FGP-2]
Length = 2014
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 140/274 (51%), Gaps = 39/274 (14%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L I+G ++ D + + +I C + LL ++N V+++
Sbjct: 1542 KSQFLANMSHELRTPLNGILGYTQILKRDTGLTSQQNSGINIIHQCGEHLLTLINDVLDL 1601
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEAGKMEL EF+L+ L+ + ++ +KG+ ++ +P + L +C V+ D +
Sbjct: 1602 SKIEAGKMELYLTEFHLSDFLQGITEICQIRAQQKGISLIYEPL--TPLPTC-VQADEKR 1658
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
L+QIL NL+ N++KFT +G + SFK D + + +
Sbjct: 1659 LRQILINLLGNAIKFTEKGGV---------SFKVDRLETQQ------------------- 1690
Query: 574 DLDALHSVERNPNLL--QFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631
+L S NP L +F F+V+DTG GI ++ + IF F Q ++ EG GLGL
Sbjct: 1691 ---SLSSPIANPQSLTAKFIFQVEDTGIGIAPEELSKIFLPFEQAS-GSVSQIEGTGLGL 1746
Query: 632 GIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
I + +V +M GE+ + + +G F F + L
Sbjct: 1747 PISRQLVEMMGGELKV--QSSLGKGSIFSFELEL 1778
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 22/141 (15%)
Query: 954 KCSEKPLNG-----KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSD 1008
K +EK + G +K LVV+D V +LG +G + +G++ +
Sbjct: 1789 KETEKIIRGFSGDRRKILVVDDRWQNRSVLVNLLGPIGFELMEATDGQDCLN-------- 1840
Query: 1009 LRKEGKALPY--DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASK 1066
KAL + D I++D MPVM+G+EA R IRK DV I +A ++G
Sbjct: 1841 -----KALLFQPDCIIIDLVMPVMDGFEAVRRIRKIPPLKDV--IAIGTSASILSGDPHS 1893
Query: 1067 IVDAGMDFHLTKPLQKDKLLD 1087
I G + L KP++ +KLL+
Sbjct: 1894 IFQDGCNAFLLKPIRAEKLLE 1914
>gi|149927836|ref|ZP_01916087.1| PAS [Limnobacter sp. MED105]
gi|149823458|gb|EDM82689.1| PAS [Limnobacter sp. MED105]
Length = 1085
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 147/301 (48%), Gaps = 55/301 (18%)
Query: 365 KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
KA +RE+ ++ + T+QAE S K LA SH++R + AI+GL++L ED +
Sbjct: 672 KAQQRELERINHVL--TDRTQQAEAASKAKGAFLANMSHEIRTPMNAIMGLLQLL-EDTD 728
Query: 425 PGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHV 484
+ L I + + LL +LN ++++S++EA K+EL F L Q+L + D++ +
Sbjct: 729 LQARQRDYLSKIGSAADVLLNVLNDILDISRVEANKLELSHSRFLLDQVLSKATDLFAYR 788
Query: 485 GIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG--HISVRAAVKK 542
+K + + C ++GDR++L QIL NL+SN++KFT +G H+ V++
Sbjct: 789 AEEKAIQLY---CSKDANCPVSLKGDRLRLAQILNNLLSNALKFTEKGRIHLQVQSVADG 845
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
K Q +F V DTG G+
Sbjct: 846 K---------------------------------------------QLQFSVKDTGIGMN 860
Query: 603 KDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
+++ ++F+ F QV +++ G GLGL I +++V LM G+I + + PG G F F
Sbjct: 861 EEQCAALFQPFSQVDDSSSRRYGGAGLGLSICKNLVELMGGQIWV-ESTPG-LGTTFHFT 918
Query: 663 V 663
V
Sbjct: 919 V 919
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 13/149 (8%)
Query: 944 LQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVC 1003
LQ A +D + P+ K+ LVV+D + V S +L K GA+ + NGKEA C
Sbjct: 938 LQTQPAPADTGPAIPPMLNKRVLVVDDHKLNRMVASEMLKKWGAQVHLAENGKEAV-QAC 996
Query: 1004 KILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGV 1063
YD ++MD +MP M+G+EAT R EE + PI+A+TA A
Sbjct: 997 VTER----------YDMVLMDLQMPEMDGYEAT--ARILEELGNAAPPIVAVTASASEQD 1044
Query: 1064 ASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
I++AGM H+ KP +K+ L+ ++ I
Sbjct: 1045 RMDILNAGMCEHVIKPFKKETLIRILLDI 1073
>gi|88797749|ref|ZP_01113337.1| PAS [Reinekea blandensis MED297]
gi|88779426|gb|EAR10613.1| PAS [Reinekea sp. MED297]
Length = 1593
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 142/299 (47%), Gaps = 57/299 (19%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGL-- 435
K +A QA + K+ LA SH++R L AIIGL L HE+ L EN L
Sbjct: 840 KLQHAITQAMSSAEAKSAFLANTSHEIRTPLNAIIGLSHLLDHEN------LTENQHLLV 893
Query: 436 --IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV 493
I+ + LL I+N V+++SKIEA ++++ NL +L+E+ ++++ KG++V
Sbjct: 894 DKIQLSGQSLLNIINDVLDLSKIEANEVDIESTPVNLRELIEDTLNVHRMQADLKGLEVA 953
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
L+ D V V D+ +LKQIL NL SN++KFTSEG IS+R
Sbjct: 954 LN-IDPKV--PNWVETDKTRLKQILDNLFSNALKFTSEGSISLR---------------- 994
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
C H VE + FEV DTG GI + Q +FE F
Sbjct: 995 ------C------------------HLVEET-DRATVRFEVIDTGIGISEKAQQQLFEPF 1029
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
Q + G GLGL I+ +V+LM+G + + +E +G F F + + + E
Sbjct: 1030 TQADVSTTRKYGGTGLGLSIILKLVYLMEGRLGLESEE--GQGSRFWFELPFKTLSDNE 1086
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 11/133 (8%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
K L LVVED I V S +L + GA V NG++A D++
Sbjct: 1243 KWLENYSILVVEDSPINQLVVSQILSRNGASVVVKDNGEDAIDYLS---------NHPEA 1293
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
+D I+MD +MP ++G E T+ IR D IPIIALTA A+ K +DAGM+ LT
Sbjct: 1294 FDAILMDVQMPGIDGLETTQRIRNHLNMTD--IPIIALTAGALVEERKKALDAGMNDFLT 1351
Query: 1078 KPLQKDKLLDVVK 1090
KP++ ++L+ ++
Sbjct: 1352 KPIEPERLIQTLR 1364
>gi|391231316|ref|ZP_10267522.1| signal transduction histidine kinase [Opitutaceae bacterium TAV1]
gi|391220977|gb|EIP99397.1| signal transduction histidine kinase [Opitutaceae bacterium TAV1]
Length = 851
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 134/278 (48%), Gaps = 51/278 (18%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA-NPGTDLA-ENLGLIRTCSKD 442
E AE S K+ LA SH++R + AIIG E+ EDA + G D A +L I T K
Sbjct: 343 ELAEEASRTKSAFLANMSHELRTPMNAIIGYSEMLIEDAGDTGNDDAIPDLRKIHTAGKH 402
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEV-VDMYYHVGIKKGVDVVLDPCDGSV 501
LLG++N V+++SKIEAGKM L E+ ++ L+ EV + V + VV P D
Sbjct: 403 LLGLINDVLDISKIEAGKMTLYLEDADVHALVSEVAATIRPLVEQNRNTLVVECPPD--- 459
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
LGS H D K++Q L NL+ N+ KFT G I++ AV +K
Sbjct: 460 LGSLHA--DITKVRQTLFNLLGNAAKFTHAGRITL--AVARK------------------ 497
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
R+ N F F V DTG G+ +++ +F+ FVQ +
Sbjct: 498 ---------------------RHQNRDWFTFRVADTGIGMTREQLGKLFQAFVQADASTT 536
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
G GLGL I + LM G+IA+A EPG+ G F
Sbjct: 537 RKYGGTGLGLAISRKFCQLMGGDIAVA-SEPGQ-GTAF 572
Score = 40.8 bits (94), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 16/125 (12%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L ++DD VL + L + G NG++A ++ L I +D
Sbjct: 609 ILTIDDDPAVLDLLGRNLAREGYAVRAATNGRDALALARELQPRL-----------ITLD 657
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
MP M+GW ++ + D+ + ++++ G A D +LTKP+ + +
Sbjct: 658 VMMPSMDGWSVLTALKADPATADIPVVMVSIVEDRQLGFALGAAD-----YLTKPVDRAR 712
Query: 1085 LLDVV 1089
L ++
Sbjct: 713 LARIL 717
>gi|373854677|ref|ZP_09597475.1| integral membrane sensor hybrid histidine kinase [Opitutaceae
bacterium TAV5]
gi|372472544|gb|EHP32556.1| integral membrane sensor hybrid histidine kinase [Opitutaceae
bacterium TAV5]
Length = 846
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 134/278 (48%), Gaps = 51/278 (18%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA-NPGTDLA-ENLGLIRTCSKD 442
E AE S K+ LA SH++R + AIIG E+ EDA + G D A +L I T K
Sbjct: 343 ELAEEASRTKSAFLANMSHELRTPMNAIIGYSEMLIEDAGDTGNDDAIPDLRKIHTAGKH 402
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEV-VDMYYHVGIKKGVDVVLDPCDGSV 501
LLG++N V+++SKIEAGKM L E+ ++ L+ EV + V + VV P D
Sbjct: 403 LLGLINDVLDISKIEAGKMTLYLEDADVHALVSEVAATIRPLVEQNRNTLVVECPPD--- 459
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
LGS H D K++Q L NL+ N+ KFT G I++ AV +K
Sbjct: 460 LGSLHA--DITKVRQTLFNLLGNAAKFTHAGRITL--AVARK------------------ 497
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
R+ N F F V DTG G+ +++ +F+ FVQ +
Sbjct: 498 ---------------------RHQNRDWFTFRVADTGIGMTREQLGKLFQAFVQADASTT 536
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
G GLGL I + LM G+IA+A EPG+ G F
Sbjct: 537 RKYGGTGLGLAISRKFCQLMGGDIAVA-SEPGQ-GTAF 572
Score = 40.8 bits (94), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 16/125 (12%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L ++DD VL + L + G NG++A ++ L I +D
Sbjct: 604 ILTIDDDPAVLDLLGRNLAREGYAVRAATNGRDALALARELQPRL-----------ITLD 652
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
MP M+GW ++ + D+ + ++++ G A D +LTKP+ + +
Sbjct: 653 VMMPSMDGWSVLTALKADPATADIPVVMVSIVEDRQLGFALGAAD-----YLTKPVDRAR 707
Query: 1085 LLDVV 1089
L ++
Sbjct: 708 LARIL 712
>gi|326796477|ref|YP_004314297.1| integral membrane sensor hybrid histidine kinase [Marinomonas
mediterranea MMB-1]
gi|326547241|gb|ADZ92461.1| integral membrane sensor hybrid histidine kinase [Marinomonas
mediterranea MMB-1]
Length = 854
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 127/267 (47%), Gaps = 52/267 (19%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP--GTDLAENLGLIRTCS 440
A + AE+ S K+ LAK SH++R L AIIGL E+ HEDA D E L + S
Sbjct: 365 ARDDAEKASAVKSEFLAKMSHELRTPLNAIIGLSEMMHEDAVEFGDEDYIEPLERVVRSS 424
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL ++N ++++SKIEAGKMEL E E + +LEEV I KG + + S
Sbjct: 425 KHLLNLINEILDISKIEAGKMELSEAELDFDAVLEEVFQTVE--PIAKGKPLSFEYESAS 482
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
V + GD +++KQI NL+SN++KFT G + ++ + + D+I
Sbjct: 483 V---GVIVGDALRIKQIFFNLLSNAVKFTESGKVKLKVVEQSDQLQVDVI---------- 529
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
DTG G+ ++ ++F++FVQV +
Sbjct: 530 -----------------------------------DTGLGMSIEQTETLFQDFVQVDSSV 554
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAI 647
EG GLGL I + +M G+I +
Sbjct: 555 NRKFEGTGLGLAISRRFARMMNGDITV 581
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 17/128 (13%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LV++DD + S +L + E +NG EA + + + L I +D
Sbjct: 617 LVIDDDLETVSYISKIL-EPRCHVETAKNGAEALE-----------KARDLKPKLITLDI 664
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
EMPV+NGW+ ++ + E DV + II++T K G+D +L KP+ ++ L
Sbjct: 665 EMPVLNGWDTLAALKADPELSDVPVVIISVTDE-----KEKAATLGVDNYLVKPITQESL 719
Query: 1086 LDVVKSID 1093
V S+D
Sbjct: 720 ERVFGSLD 727
>gi|428308622|ref|YP_007119599.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428250234|gb|AFZ16193.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 1157
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/362 (26%), Positives = 171/362 (47%), Gaps = 37/362 (10%)
Query: 367 AKREMFLCAALIKQMN-----ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
A+ E+ + + Q N A ++E + K+ LA SH++R + AIIG+ L
Sbjct: 389 AQLELVASSQELSQTNQQLEKAKAESEEATRIKSQFLANMSHEIRTPMNAIIGMTGLLLT 448
Query: 422 DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481
+ + ++ S+ LL ++N ++++SKIE+G +EL ++ FNL +EE +D+
Sbjct: 449 TEL-TPQQRDFVTTAQSSSEALLALINDILDLSKIESGSVELEKQAFNLQSCIEESLDIL 507
Query: 482 YHVGIKKGVDVV--LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAA 539
+KG+++ + P S+ + GD +L+QIL NLVSN++KFT G + V
Sbjct: 508 ALKAAEKGIELAYGMHPQTPSI-----IVGDVTRLRQILVNLVSNAVKFTQTGEVVVSVT 562
Query: 540 VKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGK 599
K+ + ++ K+ + N+ ++ A +F+F V DTG
Sbjct: 563 AKELEGDK-GDKGDKGDKGDKGEKILYTNETCYNLQPATK--------FEFQFAVKDTGI 613
Query: 600 GIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
GIP D+ + +F+ F QV + G GLGL I + + +M G + + + RG F
Sbjct: 614 GIPPDRIDRLFKSFSQVDASTTRKYGGTGLGLAIGKQLSEMMGGRMWVESQV--NRGSTF 671
Query: 660 RFNVLLTAVCERERPDTDEEDPRTH---------NDWPQTGLHQHFASF----WGSAAKS 706
F ++ A + ++D P+ ND + L Q S+ +G+A+ +
Sbjct: 672 YFTLVAAATADSSPMNSDNFPPQFQGKRLLIVDDNDTYRQILTQQLQSWGMLIYGAASAA 731
Query: 707 EG 708
E
Sbjct: 732 EA 733
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 35/150 (23%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ + KV +L ++G + +V NG E D V K YD ++M
Sbjct: 845 RILLAEDNGVNQKVALHLLKRIGYQADVVSNGLEVLDAV-----------KRKSYDVVLM 893
Query: 1024 DCEMPVMNGWEATRLIRKE-------------EEQYDVHIP-----------IIALTAHA 1059
D +MP+M+G ATR I +E + D + P IIA+TA+A
Sbjct: 894 DVQMPLMDGLTATRCICQELSGDGEFGEANQNSQNSDRNQPSKPATSHKRPRIIAMTANA 953
Query: 1060 MAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
M G + ++AGMD +L KP+ L+ +
Sbjct: 954 MQGDREECLNAGMDDYLCKPISLKALIQAL 983
>gi|357462961|ref|XP_003601762.1| Histidine kinase [Medicago truncatula]
gi|355490810|gb|AES72013.1| Histidine kinase [Medicago truncatula]
Length = 1047
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 122/429 (28%), Positives = 195/429 (45%), Gaps = 56/429 (13%)
Query: 341 SLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAK 400
S+ +LV+ + G I F +++ AK E + M ++AE + K+ LA
Sbjct: 403 SIGILVIALLVGHI----FHATVSRIAKVE----DDYQEMMVLKKRAEAADVAKSQFLAT 454
Query: 401 ASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGK 460
SH++R + ++G++ + D + E + + K L+ I+N V++ +KIE+GK
Sbjct: 455 VSHEIRTPMNGVLGMMNMLM-DTDLDVTQQEYVRTAQGSGKALVSIINEVLDQAKIESGK 513
Query: 461 MELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGS-----------CHVRG 509
+EL F++ ++++V+ ++ KGV+ L S LG+ + G
Sbjct: 514 IELEAVLFDIRSIMDDVLSLFSEKSQGKGVEA-LRVWFYSFLGAKLAVYVSDQVPQQLIG 572
Query: 510 DRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK----CLSKLF 565
D + +QI+ NL+ NS+KFT +GHI V + ++ F I R SK LS
Sbjct: 573 DPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVFHS--IEVERESTSKDAEHTLSGFP 630
Query: 566 F----RNKEGF------DDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
R+ EGF L + S N +L+ V+DTG GIP + Q IF F+Q
Sbjct: 631 VADGRRSWEGFRAFSHEGPLGSFSSTSSN-DLISLIVSVEDTGDGIPLESQPMIFTPFMQ 689
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPD 675
V + G G+GL I + +V LM GEI EP + G F F + T C P+
Sbjct: 690 VGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVS-EP-KIGSTFTFTAVFTNAC----PN 743
Query: 676 TDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIK 735
++E + N+ P H + F G AA L I R + RY L ++
Sbjct: 744 SNELKTQQINNQP----HPATSEFNGMAA--------LVIDPRPVRAEVSRYHIQRLGVR 791
Query: 736 VTIVKQEKN 744
V IV K
Sbjct: 792 VEIVSDLKQ 800
Score = 73.2 bits (178), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 15/131 (11%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L+G+K L+V+D+++ V + L K GA +G EA ++ LR + +D
Sbjct: 916 LSGRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSGIEA-------ITMLRPPHQ---FD 965
Query: 1020 YIMMDCEMPVMNGWEATRLIRK-----EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDF 1074
MD +MP M+G+EATR IR+ ++ + VH+PI+A+TA M + GMD
Sbjct: 966 ACFMDIQMPEMDGFEATRRIREIENSVKDRELFVHLPILAMTADVMQATHQECSKCGMDG 1025
Query: 1075 HLTKPLQKDKL 1085
+++KP + ++L
Sbjct: 1026 YVSKPFEAEQL 1036
>gi|408791980|ref|ZP_11203590.1| GHKL domain protein [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408463390|gb|EKJ87115.1| GHKL domain protein [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 536
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 134/278 (48%), Gaps = 51/278 (18%)
Query: 377 LIKQMNATE----QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN 432
L +QMN +A++ S KT LA SH++R L AI+G+ + +E + E
Sbjct: 140 LREQMNLANLREIEAQKASQAKTDFLASMSHEIRTPLNAILGMTDTLNETEL-TEEQQEY 198
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
L ++R K L I+N ++++S+IE+GK+E+ F++ L+ E V ++Y KG+++
Sbjct: 199 LTVLRNSGKALFNIINDILDLSRIESGKLEMEHIHFSIRDLMSETVSLFYMKAKAKGIEI 258
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
D S + GD +L+Q+L NL+ N+MKFT +G I+V
Sbjct: 259 SFHVEDEI---SESIAGDSTRLQQVLINLLGNAMKFTEKGKITV---------------- 299
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
+CL E NL + V+DTG GIP +K SIFE
Sbjct: 300 ------ECLLS------------------ENKKNL---KISVEDTGIGIPTEKLTSIFES 332
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
F QV + G GLGL I + ++ LM G+I + K
Sbjct: 333 FTQVDSSTTRKYGGTGLGLTITKKLIQLMGGDIYVISK 370
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+ ED + + K + NGK A + K+ +D ++M
Sbjct: 412 KILLAEDSEENVFIIKTFFRKYPIEIITAYNGKVALEKF-----------KSEKFDIVLM 460
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVH----IPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
D +MP M+G EATR IRK E V +PIIA++A+ SK AG+ +L+KP
Sbjct: 461 DMQMPEMDGLEATREIRKIELANQVKASDSVPIIAISANVQKDDISKSFLAGVTSYLSKP 520
Query: 1080 LQKDKLLDVV 1089
++K ++L ++
Sbjct: 521 VRKQEILKLM 530
>gi|170748185|ref|YP_001754445.1| multi-sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
gi|170654707|gb|ACB23762.1| multi-sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 1157
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 122/268 (45%), Gaps = 50/268 (18%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
QAER S K+ LA SH++R L +IG +L + + G N IRT LL
Sbjct: 663 QAERASAAKSEFLAAMSHEIRTPLNGVIGYADLLLDGTDLGPAARRNADRIRTAGAALLT 722
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N V++ SK+EAG++E+V F + L++ V + +KG+ + + LG
Sbjct: 723 VVNDVLDFSKVEAGQIEIVPRPFAVEALIDNAVSIVRPSAERKGLALTV------ALGPG 776
Query: 506 ---HVRGDRVKLKQILCNLVSNSMKFTSEGHI--SVRAAVKKKSFKQDIIASNRNVISKC 560
+ GD +L+QIL NL++N+MKFT+ G I SVR + S
Sbjct: 777 LPDWIEGDEDRLRQILLNLLNNAMKFTASGGIDLSVRVSPDAASATGGT----------- 825
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+ F V DTG GIP DK + +F F QV +
Sbjct: 826 ----------------------------RLRFAVRDTGIGIPTDKCDRLFRRFSQVDGSI 857
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIA 648
G GLGL I +S+V LM G I +A
Sbjct: 858 SREYGGTGLGLAISKSLVTLMGGTIGVA 885
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 1014 KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
+A YD ++MD +MPVM+G ATR IR +PI+A+TA+ + +++ AG+D
Sbjct: 962 QARSYDLVLMDVQMPVMDGIAATRRIRALGGAAG-RLPILAMTANVLPQQVAELRAAGLD 1020
Query: 1074 FHLTKPLQKDKLLDVV 1089
H+ KP + D LL +
Sbjct: 1021 DHIGKPFRADALLAAI 1036
>gi|374289512|ref|YP_005036597.1| putative histidine kinase/response regulator fusion protein
[Bacteriovorax marinus SJ]
gi|301168053|emb|CBW27639.1| putative histidine kinase/response regulator fusion protein
[Bacteriovorax marinus SJ]
Length = 593
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 141/298 (47%), Gaps = 49/298 (16%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+K + A +AE + K+ LA SH++R L IIG + D T+ E + I+
Sbjct: 204 VKLVEAKIKAESVANLKSNFLANMSHEIRTPLNGIIGFTGILS-DLKLSTEAKEQVRYIK 262
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-P 496
C + L I+N +++ SKI AGK+ +V+ FN+ + + ++ H+ +G+D+ +D
Sbjct: 263 ECGESLAAIINDILDFSKISAGKLSIVKSNFNIRNCVLSTIHIFDHITTSRGIDLKIDIE 322
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
D + S GD ++LKQ+L NL+ N++KFT +G I V+ V
Sbjct: 323 SDIPDILS----GDSLRLKQVLTNLIGNAVKFTEKGSIEVKVKV---------------- 362
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
V+++ + + +F+V DTG GI ++ Q +F F Q
Sbjct: 363 ------------------------VQKSDSYFKLQFKVKDTGIGIRQEAQARLFYSFEQA 398
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +V M GEI+++ +E G F F V +T E E P
Sbjct: 399 DVSTSRKYGGTGLGLSISKKLVEAMGGEISVSSEEG--VGSEFSFTV-MTYTSEEEVP 453
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 106/238 (44%), Gaps = 41/238 (17%)
Query: 858 RNAHSREYRLLPICDHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQH 916
+ A +R + D SR + G+ L + + K L E G ++ SS+E
Sbjct: 385 QEAQARLFYSFEQADVSTSRKYGGTGLGLSISKKLVEAMGG--------EISVSSEE--- 433
Query: 917 CTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDG--KCSEKPLNGKKFLVVEDDAIV 974
G+E ++ ++ S ++V +S K S+ K LV ED+ +
Sbjct: 434 -----------GVGSEFSFTVMTYTSE-EEVPTESKKVEKNSKGSYGDFKILVAEDNKVN 481
Query: 975 LKVTSAVLGKLG-AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGW 1033
+ +L KLG F++ NGK A + L +E + I+MD +MPVM+G+
Sbjct: 482 QLLVKKLLQKLGYTNFKIVDNGKLAIEA-------LNEE----DFHLILMDIQMPVMDGY 530
Query: 1034 EATRLIRKEEEQYDVHIPII-ALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
EA R I K + D P I AL+A+ M K + G D ++ KP+ D+ V++
Sbjct: 531 EAARTIIKYWK--DEKRPFIYALSANVMEEDKQKAREIGFDGYIQKPIDVDEFSQVLE 586
>gi|237745636|ref|ZP_04576116.1| signal transduction histidine kinase [Oxalobacter formigenes
HOxBLS]
gi|229376987|gb|EEO27078.1| signal transduction histidine kinase [Oxalobacter formigenes
HOxBLS]
Length = 577
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 155/314 (49%), Gaps = 55/314 (17%)
Query: 353 VISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAI 412
++ +GL I L + +A R+ L A L+ A E A R+ K+ L++ SH++R + I
Sbjct: 164 IVFIGLVIFLYSYSA-RQKKLSADLL----AAENASRE---KSEFLSRMSHEIRTPMNGI 215
Query: 413 IGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQ 472
IG+ ++ + L +L I S+ LL ++N +++M++IE+GK+EL + F+L
Sbjct: 216 IGMTKMARMSVDDKNKLLNSLDKIDFSSRFLLALINDILDMARIESGKVELYNQPFDLLH 275
Query: 473 LLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG 532
L++ + M+ + V ++ D SV G V GD +++ QI+ NLVSN++KFT G
Sbjct: 276 LVDGIEIMFRQKAVDNQVTFRVNTHDLSVPG---VVGDELRINQIIINLVSNALKFTPAG 332
Query: 533 HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEF 592
G LD + + + N ++ EF
Sbjct: 333 --------------------------------------GQVMLD-IKAHRTSGNAVRLEF 353
Query: 593 EVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEP 652
+ DTG G+ ++ +FE F Q E+A+ + G GLGL I ++VH+M G I + K P
Sbjct: 354 RISDTGIGMSEEFMQRMFEPFEQASESAMQYG-GTGLGLAICHNLVHMMNGTINVTSK-P 411
Query: 653 GERGVCFRFNVLLT 666
G +F V+LT
Sbjct: 412 GNGS---QFTVILT 422
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G++ L+ ED+ + ++ A+L GA E NGKEA L+ RK Y
Sbjct: 448 LKGRRILIAEDNPLNAEIVMAMLEAAGAVLEHVTNGKEA-------LNAFRKSPPG-SYS 499
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MD +MP MNG +AT IRK +P+IALTA+A +GM+ ++TKP
Sbjct: 500 MILMDVQMPEMNGMDATEAIRKLHRPDAETVPVIALTANAFQEDMDAAFKSGMNGYITKP 559
Query: 1080 LQKDKLLDVV 1089
+ +KL + +
Sbjct: 560 IDLNKLYETL 569
>gi|383756738|ref|YP_005435723.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
gi|381377407|dbj|BAL94224.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
Length = 1182
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 140/294 (47%), Gaps = 54/294 (18%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLIRTCS 440
A E AE S K+ LA SH++R + AIIG+ L + D NP + L I+T
Sbjct: 527 RAQELAEAASAAKSNFLATMSHEIRTPMNAIIGMTALALNTDLNPRQR--DYLHKIQTAG 584
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL +N +++ SKIEAGK+E+ EF L ++L EV D KG++ V+D
Sbjct: 585 RSLLATINDILDFSKIEAGKLEIERREFELEEVLGEVCDQLAARAAAKGLEFVVD----- 639
Query: 501 VLGSCHVR---GDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
LG+ R GD ++L Q+L NL N++KFT +G + VR V++++ +D V+
Sbjct: 640 -LGTEVPRRLIGDPLRLGQVLLNLCGNAVKFTEQGGVCVRLHVQRQT--EDC------VM 690
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+C V D+G G+ ++++ +F+ F Q
Sbjct: 691 LRC--------------------------------AVQDSGIGLDAEQRSRLFQSFQQAD 718
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER 671
+ G GLGL I + +V L GEI + D EPG G F F L V R
Sbjct: 719 SSITRRYGGTGLGLVIAKRLVELQGGEIGV-DSEPGA-GSTFWFTAHLGVVAGR 770
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 13/126 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G++ L+ ED+ + +V +L +LG + +V NG A + V ++ YD
Sbjct: 925 LRGRRVLLAEDNDLNQQVAVELLSELGLEVDVAENGLVAVEKV-----------RSTHYD 973
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MP M+G ATR IR +PI+A+TA+AM G + ++AGMD H+ KP
Sbjct: 974 LVLMDMQMPEMDGLSATRAIRALPGA--ARLPIVAMTANAMQGDVQRCLNAGMDDHIAKP 1031
Query: 1080 LQKDKL 1085
+ ++L
Sbjct: 1032 IDPNRL 1037
>gi|398348224|ref|ZP_10532927.1| hypothetical protein Lbro5_13569 [Leptospira broomii str. 5399]
Length = 829
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 128/266 (48%), Gaps = 44/266 (16%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
QAE + K+ LA SH++R + I+ + + + PG + E +G+I + +LL
Sbjct: 450 QAETANRQKSKFLAHMSHEIRTPMNGILAMSKFLFDSEPPG-EKKETIGIITASANNLLV 508
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
I+N ++++SKIE+GK++L+ E F L+ LL ++ + KG+D+ D
Sbjct: 509 IINDILDLSKIESGKLDLIYESFRLSDLLAQITGIIRLQTNSKGIDLQFDSTPEV---PE 565
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
+R DR +L QIL NL+ NS KFT G I + V+ K +Q
Sbjct: 566 FIRTDRTRLTQILLNLLGNSAKFTGHGKIQLSVRVRNK--RQ------------------ 605
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
+D+D EF V DTG GI +K +S+F+ F Q+ +
Sbjct: 606 -------EDID-------------LEFSVRDTGIGISPEKISSLFQPFTQLDSSITRTYG 645
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKE 651
G GLGL I + + L++G I++ E
Sbjct: 646 GTGLGLIISKRLCELLQGNISVQSLE 671
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 945 QQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCK 1004
Q V +S+G+ E LVV+D+A V +L K G + +G+EA H+
Sbjct: 694 QPVLPKSEGRKME-------ILVVDDNASNQFVIQRLLSKFGHSATIASSGREAL-HLLN 745
Query: 1005 ILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVA 1064
S +D I+MD EMP ++G+E TR IRK I IIALTAHAM
Sbjct: 746 ERS----------FDLILMDIEMPELDGFETTRQIRKMHGDRANPI-IIALTAHAMKEFE 794
Query: 1065 SKIVDAGMDFHLTKPL 1080
D GM+ L KP+
Sbjct: 795 QMSYDVGMNDFLAKPI 810
>gi|94499808|ref|ZP_01306344.1| putative sensor protein [Bermanella marisrubri]
gi|94428009|gb|EAT12983.1| putative sensor protein [Oceanobacter sp. RED65]
Length = 938
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 45/287 (15%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
K + A EQAER + K+ LA SH++R + ++G+++L + D + L T
Sbjct: 412 KMIQAKEQAERATQAKSEFLANMSHEIRTPMNGVLGMLKLVRKSKGLNRDQLHQINLAHT 471
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
++ LL ++N +++ SKIEAGK+ L +FNL + + ++ + KK +D+ LD D
Sbjct: 472 SAESLLVVINDILDFSKIEAGKINLETIDFNLLEWISDISESLAFHAHKKDIDLSLDISD 531
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
+ ++ GD +++Q++ NLV N++KFT++G + ++ + K +
Sbjct: 532 VTYF---NLIGDPNRVRQVISNLVGNAIKFTNDGWVKIKLSTKPEK-------------- 574
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
NL++ + DTG GI +D+ + +F F Q
Sbjct: 575 --------------------------SNLIKLSCSIKDTGIGIAEDRLDKLFSAFEQADN 608
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ G GLGL I + + +M G++ ++ PG G F F++ +
Sbjct: 609 STTRQYGGTGLGLAIAKKLCEIMGGDVTVS-STPG-VGSQFSFHIFI 653
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 10/122 (8%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+VED+ I ++ +VL LG EV NG+ A D + K D +D I+MDC
Sbjct: 814 LLVEDNPINQEIAVSVLDDLGITSEVADNGRIALD-ILKNNPDC--------FDMILMDC 864
Query: 1026 EMPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
+MP ++G++ + IR + + +PI+A+TA+AM G K + AGMD +L+KP+ D
Sbjct: 865 QMPELDGYQTSIAIRDGQAGDHAKSLPIVAMTANAMEGDKEKCIAAGMDDYLSKPIDVDL 924
Query: 1085 LL 1086
LL
Sbjct: 925 LL 926
>gi|354564979|ref|ZP_08984155.1| multi-sensor hybrid histidine kinase [Fischerella sp. JSC-11]
gi|353550105|gb|EHC19544.1| multi-sensor hybrid histidine kinase [Fischerella sp. JSC-11]
Length = 2264
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 146/295 (49%), Gaps = 41/295 (13%)
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
L+A+ K+ +AL K + A + A R K+ LA SH++R L AI+G ++
Sbjct: 1712 LLARTQKQ----SSALQKAVIAADAANRA---KSEFLANMSHELRTPLNAILGFTQIMSR 1764
Query: 422 DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481
D+ ++ +NL +I + LL ++N ++EMSKIEAG+ L F+L LL+ + +M
Sbjct: 1765 DSTLSSENKQNLAIINRAGEHLLNLINDILEMSKIEAGRTTLNLSSFDLIYLLDNLQEML 1824
Query: 482 YHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541
+ + KG+ +V + +VR D KL+Q+L N++ N++KFT G + +R
Sbjct: 1825 HIRAVAKGLKLVFEYAPEI---PRYVRTDSSKLRQVLLNVLGNAIKFTETGSVKLRV--- 1878
Query: 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLD--------ALHSVERNPNLLQFEFE 593
F D +R + EG D + + + P+L FE
Sbjct: 1879 ---FLTDAKKDDREI-------------EGLGDGEKNFTPPPHLPTTPSQKPHLC---FE 1919
Query: 594 VDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIA 648
+ DTG GI ++ + +F+ F Q E Q+G GLGL I + V LM GEI ++
Sbjct: 1920 IQDTGPGISPEEIDLLFQAFGQT-EAGRKSQQGTGLGLAISRKYVQLMGGEINVS 1973
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 80/195 (41%), Gaps = 50/195 (25%)
Query: 928 SFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVED--DAIVLKVTSAVLGKL 985
SF + G + + V Q G +P + LVV+D D+ +L V +L +
Sbjct: 1983 SFYIQIGIASVDEIQTTTSVHHQVIGIAPNEP--EYRILVVDDANDSRLLLVK--LLTSI 2038
Query: 986 GAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQ 1045
G NGKEA L DL I+MD MP+M+G+EATR I++ E Q
Sbjct: 2039 GFSVREATNGKEAISIWESWLPDL-----------ILMDMRMPIMDGYEATREIKRRERQ 2087
Query: 1046 -----YDVHI----------------P------------IIALTAHAMAGVASKIVDAGM 1072
D+ I P IIALTA+A ++ AG
Sbjct: 2088 DKGDKGDIGILRRGDGENVVDNFSASPTLRVWGSSSPTIIIALTANAFEEQRQAMISAGC 2147
Query: 1073 DFHLTKPLQKDKLLD 1087
D + KP +++ LL+
Sbjct: 2148 DDFINKPFREELLLE 2162
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 953 GKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKE 1012
G + + + L+V+D L+ SA L + G G + V K+
Sbjct: 2 GSSNSQQTSKGSILIVDDSWEHLQALSATLSQYGYAVRGLITGSMVLE-VAKL------- 53
Query: 1013 GKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGM 1072
ALP D I++D +MP ++G+E + ++ +E HIP+I L+ + K G
Sbjct: 54 --ALP-DLILLDIKMPDIDGYEVCQQLKADEA--TCHIPVIFLSVYHDVFDKVKAFKIGA 108
Query: 1073 DFHLTKPLQKDKLL 1086
++TKP Q +++L
Sbjct: 109 VDYITKPFQAEEVL 122
>gi|440679909|ref|YP_007154704.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428677028|gb|AFZ55794.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1543
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 140/300 (46%), Gaps = 56/300 (18%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA--NPGTDLAENLGLIRTCS 440
A QAE S+ K+ LA SH++R + A++G+ L E A D E IR
Sbjct: 873 ARHQAELASLAKSAFLANMSHEIRTPMNAVLGMTGLLLETALNREQQDFVET---IRISG 929
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
LL ++N ++++SK+EAG+MEL +F+L+ +EEV+D+ KG+++ G+
Sbjct: 930 DALLSLINEILDLSKLEAGEMELEHLDFDLSSCIEEVLDLLAPQAHHKGLEI------GA 983
Query: 501 VLGS---CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
++ ++GD +L+QIL NL+ N++KFTSEG + V+ + ++ I
Sbjct: 984 LIRRKVPIQLQGDASRLRQILMNLIGNAIKFTSEGEVVVQVELLSETATTATI------- 1036
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+F + DTG GI + Q+ +F+ F QV
Sbjct: 1037 ---------------------------------KFSITDTGIGITSEDQHKLFQAFSQVD 1063
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF--RFNVLLTAVCERERPD 675
+ G GLGL I + +V+LM GEI + + CF F L C + P+
Sbjct: 1064 ASITRQYGGTGLGLAICRQLVNLMGGEIGVTSEIGQGSKFCFDLSFTKQLYFACPVKEPE 1123
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 73/130 (56%), Gaps = 14/130 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ + KV L LG + NG+E H+ + +PYD I+M
Sbjct: 1286 RVLLAEDNLVNQKVALKQLQTLGYIADTVSNGEEVL-HLLE----------TVPYDLILM 1334
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDV---HIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
DC+MPV++G + TR IR + + + IIA+TA+AM ++AGM+ +++KP+
Sbjct: 1335 DCQMPVLDGLQTTRAIRNWPDSHFLRRRQPVIIAMTANAMKEDEQTCLNAGMNGYVSKPV 1394
Query: 1081 QKDKLLDVVK 1090
K+KL ++++
Sbjct: 1395 VKEKLANILE 1404
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 8/133 (6%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L ++ LVV+D+ K+ + G + + EA + + PYD
Sbjct: 1125 LTNRRLLVVDDNDTNRKIVYHQATRWGMQVD------EAANAQVAFQALQAAAAAGKPYD 1178
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++D +MP ++G T ++ + H+P+I LT+ K + G +L KP
Sbjct: 1179 IALVDMQMPTVDG--LTLGVQIKANDAIAHVPLIMLTSTNQRDEVQKALKIGFAGYLVKP 1236
Query: 1080 LQKDKLLDVVKSI 1092
++ +L D + +I
Sbjct: 1237 VKPSRLFDTIMNI 1249
>gi|407700971|ref|YP_006825758.1| sensory box histidine kinase/response regulator [Alteromonas
macleodii str. 'Black Sea 11']
gi|407250118|gb|AFT79303.1| sensory box histidine kinase/response regulator [Alteromonas
macleodii str. 'Black Sea 11']
Length = 1070
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 156/321 (48%), Gaps = 61/321 (19%)
Query: 347 LMFIAGVI-SLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDV 405
L FI VI SLGL + L + + L T+ ++ + K+ LA+ SH++
Sbjct: 393 LYFIGFVILSLGLVVGLWLRTRNQRKALDTL-------TQDLQKATKAKSDFLARMSHEI 445
Query: 406 RASLAAIIGLVELCH---EDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKME 462
R L AIIGL +L ED T+L + I S+ LL I+N +++ SKIEAGK++
Sbjct: 446 RTPLNAIIGLTKLSQRAAEDKEQQTNLIQ----IEGASQTLLSIINDILDFSKIEAGKLD 501
Query: 463 LVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLV 522
+ +FNL L+ + + ++ +K ++++ L ++ GD ++++QIL NLV
Sbjct: 502 IESTQFNLDALVNQTIRLHLGRAEEKHIELIQHISRDVPL---NLIGDPLRIQQILSNLV 558
Query: 523 SNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVE 582
SN++KFT +G ISV +C H+VE
Sbjct: 559 SNALKFTEDGLISVSV--------------------RC-----------------THNVE 581
Query: 583 RNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMK 642
+Q EFEV DTG G+ ++ +F+ F Q E+ G GLGL I + +V LM
Sbjct: 582 D----IQLEFEVKDTGIGLSSTQKALLFQPFNQGDESISRRYGGTGLGLAICKQLVTLMG 637
Query: 643 GEIAIADKEPGERGVCFRFNV 663
GEI + + + G +G F F V
Sbjct: 638 GEIWV-ESQLG-KGASFHFTV 656
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 72/130 (55%), Gaps = 13/130 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G K L ED+ + KVT +L A EV NG EA + LR++ +D
Sbjct: 816 LRGTKILFAEDNTLNQKVTLGLLNDTHATIEVVSNGLEA-------IKVLREDN---SFD 865
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MPVM+G A + IR E+ + +PIIA+TAHAM K + AGMD H+ KP
Sbjct: 866 VVLMDIQMPVMDGLTAAKKIR---EELKLTLPIIAMTAHAMQQDIDKSLSAGMDGHINKP 922
Query: 1080 LQKDKLLDVV 1089
+ ++ DV+
Sbjct: 923 VDPNRFFDVL 932
Score = 41.2 bits (95), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 16/164 (9%)
Query: 930 GAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKF 989
GA +++ + QQ+ + S K L+ K L+ +D + + L K
Sbjct: 649 GASFHFTVTVKQDASQQIVSPS------KQLSSLKVLIADDIGVSRDAITEALSVANIKA 702
Query: 990 EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVH 1049
+V GKEA + + G + PYD +++D MP ++G E ++++E +
Sbjct: 703 DVAAGGKEAIARMRAAV------GNSAPYDVLILDWNMPDIDGLEVAAIMKQE---FSSK 753
Query: 1050 IP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
P +I L A + + G+ + KP +L+D ++ +
Sbjct: 754 PPKVIMLYAFESPRMREQANQLGIRTFIKKPFSTSELVDKLQEL 797
>gi|410672176|ref|YP_006924547.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
gi|409171304|gb|AFV25179.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
Length = 1772
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 44/291 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A +AE + K+ LA SH++R + +IG+ L D + + ++ +
Sbjct: 1118 ALARAEEATKAKSEFLANMSHEIRTPMNGVIGMTGLLL-DTELNEEQRHYVETVQASGEA 1176
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL I+N +++ SKIEAGK+EL +F+L LL++ M KG++ + C
Sbjct: 1177 LLEIINDILDFSKIEAGKLELEVLDFDLHSLLDDFASMLSIRAHDKGLEFI---CAAEPA 1233
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++RGD +L+Q+L NL N++KFT +G ++VR ++ ++
Sbjct: 1234 VPAYIRGDTGRLQQVLVNLTGNAVKFTHQGEVAVRVTLESET------------------ 1275
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
D AL F V DTG GIPKDK S+F +F QV +
Sbjct: 1276 -----------DAGAL-----------LRFSVRDTGIGIPKDKIGSLFGQFYQVDASTTR 1313
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL I + +V +M GEI + +E F + C+R++
Sbjct: 1314 QYGGTGLGLAISKQLVEMMGGEIGVRSEEGKGSEFWFTAHFAKQPDCDRKK 1364
Score = 94.4 bits (233), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 12/136 (8%)
Query: 955 CSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK 1014
S++ +N + L+ ED+ + KV ++L KLG + + NG EA K +
Sbjct: 1513 TSKRGINNVRVLLAEDNIVNQKVAQSMLKKLGFRADTVANGAEAV-----------KALE 1561
Query: 1015 ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQY-DVHIPIIALTAHAMAGVASKIVDAGMD 1073
LPYD ++MD +MP M+G EATRLIR+ + IPIIA+TAHAM G + ++AGMD
Sbjct: 1562 TLPYDLVLMDVQMPEMDGMEATRLIRQPGSAVLNREIPIIAMTAHAMKGDRERFIEAGMD 1621
Query: 1074 FHLTKPLQKDKLLDVV 1089
+++KP+ L++++
Sbjct: 1622 DYISKPVSLKSLIELL 1637
Score = 49.3 bits (116), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
+ + LVV+D+A ++ L G++ + +G A + K D P+
Sbjct: 1370 IQSARILVVDDNATNREILINQLSSWGSRAKEAVDGPMALQALYKAYEDNE------PFQ 1423
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++D +MP M+G R+I+ +E+ + H +I L++ + ++ + + +LTKP
Sbjct: 1424 VALLDMQMPGMDGATLARIIKSDEKLKNTH--LIMLSSMGQWSASQQLEKSYFEAYLTKP 1481
Query: 1080 LQKDKLLDVVKSI 1092
+++ LLD + SI
Sbjct: 1482 VRQSSLLDKLSSI 1494
>gi|359447438|ref|ZP_09237034.1| hypothetical protein P20439_3403 [Pseudoalteromonas sp. BSi20439]
gi|358038719|dbj|GAA73283.1| hypothetical protein P20439_3403 [Pseudoalteromonas sp. BSi20439]
Length = 789
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 164/348 (47%), Gaps = 67/348 (19%)
Query: 344 LLVLMFIAGVISLGLF----IILIAKAAKREMFLCA--ALIKQMNATEQ----------- 386
+L +M AG S+G+ + A E FL A ALI ++++EQ
Sbjct: 213 MLCVMIPAGSGSIGVVCAEQATVRAWTQNEEGFLIAIGALIGSLHSSEQRIETEAELVKA 272
Query: 387 ---AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDL 443
AE+ + K+ LA SH++R + ++G++ L + + ++ L ++ ++ L
Sbjct: 273 KEAAEQAVIAKSEFLASMSHEIRTPMNGVLGMLNLI-QTTSLDQQQRHHIKLAQSSAESL 331
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLG 503
LGI+N +++ SKIEAGK+++ +FNL +LL E+V+ + ++LD +
Sbjct: 332 LGIINDILDFSKIEAGKLDIENIQFNLPKLLGEIVESFALKAESNNTQLILDTTH---VS 388
Query: 504 SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSK 563
+ + D +L+QIL NL++N++KFT G + V A
Sbjct: 389 TSEIVCDPNRLRQILNNLIANAIKFTQNGQVLVTA------------------------- 423
Query: 564 LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH 623
++E+ + E + DTG GI DKQ +F+ F Q +
Sbjct: 424 ----------------TIEKTIDNTTLECAIIDTGIGISLDKQKQLFDSFTQADASTTRQ 467
Query: 624 QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER 671
G GLGL IV+ + LM GE+++ + P E G F F+V +T+V ++
Sbjct: 468 YGGTGLGLAIVKQLCELMGGEVSV-NSLPNE-GSTFAFSVKITSVIDQ 513
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 9/116 (7%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+VED+ + V A+L + F++ +G++A + + A Y I+MDC
Sbjct: 666 LLVEDNKVNQVVAGALLKQAELTFDIAEDGEDALTKL--------NQATANTYQLILMDC 717
Query: 1026 EMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+MP+M+G++AT IR+ Q + IPIIALTA+AM G K ++AGM+ +L+KPL
Sbjct: 718 QMPIMDGYQATMAIREGLAGQENRAIPIIALTANAMHGDKEKCLNAGMNDYLSKPL 773
>gi|444737612|emb|CCL97997.1| histidine kinase 2, putative, expressed [Musa balbisiana]
Length = 999
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 155/303 (51%), Gaps = 21/303 (6%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
+ M ++AE + K+ LA SH++R + ++G++++ D + + + +
Sbjct: 407 QMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM-DTDLDITQEDYVRTAQA 465
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
K L+ ++N V++ +KIE+GK+EL F+L +L++++ ++Y +KG+++ + D
Sbjct: 466 SGKALVSLINEVLDQAKIESGKLELEAVPFDLRAVLDDILSLFYGKAQEKGLELAVYVSD 525
Query: 499 G--SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKK---SFKQDIIASN 553
VL GD +++QI+ NL+ NS+KFT GHI + + ++ S ++I +
Sbjct: 526 QVPDVL-----VGDHGRIRQIITNLMGNSIKFTERGHIYLTVHIFEEVLNSLDKEIEVHS 580
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFE-------FEVDDTGKGIPKDKQ 606
+ + R+ E F + L +P+LL V+DTG GIP + Q
Sbjct: 581 TDTLCGFPVANRRRSWESFKNFK-LELPASDPSLLSTSSNHINLIISVEDTGVGIPLEAQ 639
Query: 607 NSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
+ +F F+QV + G G+GL I + +V LMKGEI + + G F F V+LT
Sbjct: 640 SRVFTPFMQVGPSISRIHGGTGIGLSISKCLVGLMKGEIGFVSQP--QIGSTFTFTVVLT 697
Query: 667 AVC 669
C
Sbjct: 698 RAC 700
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 28/116 (24%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L+ K+ LVV+D+ + L+V L K GA+ +GK+A + L+ K +D
Sbjct: 858 LHEKQILVVDDNIVNLRVAYGALKKYGAEVTCAESGKKA-------IGMLKPPHK---FD 907
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHIPIIALTA 1057
MD +MP M+G+EAT+ IR+ E + H+PI+A+TA
Sbjct: 908 ACFMDIQMPEMDGFEATKRIREMEADINKQIECREVPVETSENVLHWHVPILAMTA 963
>gi|386013073|ref|YP_005931350.1| Virulence sensor protein bvgS [Pseudomonas putida BIRD-1]
gi|313499779|gb|ADR61145.1| Virulence sensor protein bvgS [Pseudomonas putida BIRD-1]
Length = 1210
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 53/308 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A +QA+ + K+ LA SH++R + A+IG++EL + A+ G L L +K
Sbjct: 699 QAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGRVDRSALELAHHSAK 758
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG--VDVVLDPCDG 499
DLLG++ ++++ +IE+G + L E +LA L+E V ++ +KG ++V + P
Sbjct: 759 DLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARIFDGQARQKGLALEVQIAPA-- 816
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
CHV D ++ KQ+L NLVSN++KFT G + +
Sbjct: 817 ---ARCHVLLDPLRFKQVLSNLVSNAIKFTEHGQVRI----------------------- 850
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
C+ L DD + +V E EV D+G GI D +F F+Q
Sbjct: 851 CVRLL--------DDGTSTPAV--------LELEVRDSGIGIHPDDLQRLFNPFIQANPH 894
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT--- 676
+ G + G GLGL I +++ +M G +++ E + G R + L V E+P
Sbjct: 895 SQGARAGTGLGLAICRNLCEMMGGSLSMKSLE--DVGTQVRLKMPLQRVDGAEQPKPLPE 952
Query: 677 --DEEDPR 682
D DPR
Sbjct: 953 QLDVPDPR 960
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 20/138 (14%)
Query: 952 DGKCSEKPLNGK--------KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVC 1003
DG KPL + LV++D L++ + LG LG + R+G+E
Sbjct: 942 DGAEQPKPLPEQLDVPDPRLNVLVIDDHPANLQLMAQQLGYLGLEHASARDGQEGLATW- 1000
Query: 1004 KILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQ-YDVHIPIIALTAHAMAG 1062
+EG +D +++DC MP MNG++ +R EE Q I+ TA+A
Sbjct: 1001 -------REGD---FDVLVLDCNMPHMNGYQLATAVRAEERQGKRPPCTILGYTANAQPE 1050
Query: 1063 VASKIVDAGMDFHLTKPL 1080
V K + AGMD L KP+
Sbjct: 1051 VRRKCLTAGMDDCLLKPI 1068
>gi|421098537|ref|ZP_15559206.1| 7TM diverse intracellular signaling [Leptospira borgpetersenii str.
200901122]
gi|410798500|gb|EKS00591.1| 7TM diverse intracellular signaling [Leptospira borgpetersenii str.
200901122]
Length = 819
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 163/358 (45%), Gaps = 72/358 (20%)
Query: 338 NKLSLMLLVLMFIAGVISLGLFIILIAKAAK---------------REMFLCAALIKQ-- 380
N LSL LL L F++ I LF +++ + K + + L I+Q
Sbjct: 359 NYLSLHLLKLAFVSQSI---LFSVMLVQRIKELEFRLKEGLQSEIHKNIILLKKEIQQRR 415
Query: 381 ------MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLG 434
+ A E AE+ S K+ LA SH++R + ++G+V+L + E +
Sbjct: 416 ETEWELIQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYIQ 474
Query: 435 LIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL 494
++ +K LL I+N +++ SKIEAGK+ L +E F++ +L+E+ D+ Y + +K + + L
Sbjct: 475 ILSISAKSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHDLLYPLAKQKRIGLRL 534
Query: 495 DPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
+G +V GD+++L+QIL NL N +KFT+ G + +
Sbjct: 535 ---EGKFEIQEYVYGDQLRLRQILWNLTGNGIKFTNHGEVVL------------------ 573
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
NV K +SK + + EF V D+G GIP +KQ +F+ F
Sbjct: 574 NVSQKNISK----------------------DKISIEFTVSDSGIGIPLEKQKQVFDAFS 611
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
Q + G GLGL I + +V L G + + KE G F F + E E
Sbjct: 612 QSDTSTARKFGGSGLGLSITKQLVELQGGTLNLESKEG--YGSKFTFTITYGIPSESE 667
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV ED+ + L KLG V NG+E + K+ D +D I+M
Sbjct: 693 RILVAEDNETNCLLIERALKKLGYDPVVVHNGREVIE---KMQLDF--------FDMILM 741
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D MP ++G EAT+ IR +++ I IIALTA + + GM+ +LTKPL
Sbjct: 742 DIHMPEVDGIEATKWIRSQKQNTGFPI-IIALTADVIESNKEVYISKGMNDYLTKPL 797
>gi|296388021|ref|ZP_06877496.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PAb1]
gi|416881857|ref|ZP_11921716.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
152504]
gi|334835543|gb|EGM14411.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
152504]
Length = 918
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----SGRER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTRFSVDLPLSP 635
Query: 668 VCE 670
E
Sbjct: 636 ALE 638
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQ---SDGKCSE----KPLNGKKFLV 967
QHC D P L+ ++ + +L ++ + G+ SE + L+ LV
Sbjct: 734 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERLDAPCILV 793
Query: 968 VEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM 1027
ED+ + V L K G + NG+ A D + + ++ I+MD EM
Sbjct: 794 AEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGEM 844
Query: 1028 PVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
P M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 845 PEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAELY 904
Query: 1087 DVVKSI 1092
++ +
Sbjct: 905 ATLERL 910
>gi|392395357|ref|YP_006431959.1| PAS domain-containing protein [Desulfitobacterium dehalogenans ATCC
51507]
gi|390526435|gb|AFM02166.1| PAS domain S-box [Desulfitobacterium dehalogenans ATCC 51507]
Length = 1007
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 145/294 (49%), Gaps = 56/294 (19%)
Query: 376 ALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCH----EDANPGTDLAE 431
A ++ A E+AE + K+ LA SH++R + IIG+++L ED E
Sbjct: 498 AEVELQQAKEKAEAANRAKSEFLANMSHEIRTPINGIIGMIDLTLLASLEDIQ-----KE 552
Query: 432 NLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD 491
NL + + C+ L I+N +++ SKIEAGK+ + E EFNL +++E+++ + +K +D
Sbjct: 553 NLKIAKNCAYSLFKIINDILDFSKIEAGKLTVEEIEFNLKEIIEQIIKTHSPEAERKDLD 612
Query: 492 VVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIA 551
+V S + GD ++KQ+L NL+SN++KFT G +S+ +K+ + +D
Sbjct: 613 LVY---TFSANLPDYYNGDPERIKQVLNNLLSNALKFTERGEVSL--TIKRLQWDKD--- 664
Query: 552 SNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFE 611
+F+F V DTG GI K++Q ++FE
Sbjct: 665 -----------------------------------FSEFKFTVKDTGIGIAKEEQINLFE 689
Query: 612 EFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
EF QV + G GLGL I + +V +M G+I + E+G F V+L
Sbjct: 690 EFNQVDGSITRKYGGTGLGLAISRKLVDMMGGKIWV----ESEKGKGSSFCVVL 739
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED A+ V + +L G +V +G+EA K YD I+M
Sbjct: 770 RILLAEDHAVNSVVITEMLKTQGHAVDVAMDGEEALALYHKN-----------SYDVILM 818
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D ++P ++G E T+ IR E E H PIIA+TA+A+ G ++AGMD ++ KP+ +
Sbjct: 819 DIQLPRLDGIEVTKRIR-ESEGVQSHTPIIAITAYALKGDREGFLNAGMDEYIPKPVMME 877
Query: 1084 KLLDVVKSI 1092
+L+ V+ +
Sbjct: 878 ELIMVLDRV 886
>gi|359459602|ref|ZP_09248165.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris sp. CCMEE 5410]
Length = 1582
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 147/295 (49%), Gaps = 36/295 (12%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA--NPGTDLAENLGLIRTC 439
A + A+ ++ K+ LA SH++R + A+IG+ L N D E IR+
Sbjct: 1036 QARKDADAANVAKSEFLATMSHEIRTPMNAVIGMTGLLLNTTLDNQQRDFVET---IRSS 1092
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPC 497
LL ++N +++ SKIEAGK+E E+ F+L +EE + + I K +++ + DP
Sbjct: 1093 GDALLTLINDILDFSKIEAGKLEFEEQPFSLRACIEESLRLVAPRAIDKQLELAYLFDPS 1152
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ H+ GD +L+QIL NL++N +KFT +G + + + QDI ++ I
Sbjct: 1153 TPN-----HIVGDVTRLRQILVNLLTNGVKFTEQGEVVI--------YVQDITDTD---I 1196
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
++ + ++ F D ++ L+QFE V D+G GIP D+ + +F+ F QV
Sbjct: 1197 AQPETT---PQRKNFTD------IQNQRRLVQFE--VRDSGIGIPADRMDRLFKSFSQVD 1245
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
+ G GLGL I +S+ +M G I + K G F F + + E E
Sbjct: 1246 ASTTKKYGGTGLGLAICRSLSQMMGGRIWVESK--AGVGSSFFFTIAVPVAPEGE 1298
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 12/122 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED + KV +L +LG + +V NG+E +L L ++ YD ++M
Sbjct: 1455 QILLAEDIVVNQKVALLILKQLGYRADVANNGEE-------VLEALHRQS----YDVVLM 1503
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G A R I KE+ Q + IIALTA+AM G + AGM +++KP++ D
Sbjct: 1504 DVQMPEMDGLTAARHI-KEQWQEEDQPYIIALTANAMQGDREMCMAAGMHDYVSKPIRVD 1562
Query: 1084 KL 1085
+L
Sbjct: 1563 EL 1564
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
S++ L+GK+ LVV+D+ ++ + G + G EA L+ L + K
Sbjct: 1304 SQQLLDGKQLLVVDDNPTNRRILTLQAQTWGMGIQTVSGGAEA-------LALLESDSK- 1355
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075
+D ++D +MP M+G E R IR+ +++ H+P++ L++ + +
Sbjct: 1356 --FDLAILDMQMPEMDGVELARHIRQLDQRK--HLPLVMLSSLGQDEIIKHKQEIQFSAI 1411
Query: 1076 LTKPLQKDKLLDVVKSIDETMEKQ 1099
L KP+Q+ L D + I E Q
Sbjct: 1412 LNKPIQQSYLYDALAEIFEGQRVQ 1435
>gi|118589406|ref|ZP_01546812.1| two component sensor kinase [Stappia aggregata IAM 12614]
gi|118438106|gb|EAV44741.1| two component sensor kinase [Labrenzia aggregata IAM 12614]
Length = 1129
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 69/348 (19%)
Query: 343 MLLVLMFIAGVISLGLFIILIAKAAKR-----EMFLCAALIKQMNA-----------TEQ 386
+LL+ A V+ + + +++A +R M A L K+++A E
Sbjct: 614 VLLIFFVFAIVVGIACWFLVLAHDTRRVAEEESMRQNALLQKEIDAHSVTDAALQKAKEN 673
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
AE ++ K+ + SH++R L A++G ++ D + + IR ++ L G+
Sbjct: 674 AEAANLAKSRYVVGLSHELRTPLNAVMGYAQVLERDDSVPAARKPAISTIRRSAEHLSGL 733
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH 506
++ ++++S+IEAG++++ E N+ + L+++VDM+ KG+ D
Sbjct: 734 IDGLLDISRIEAGRLQIYSNEINIHEFLDQIVDMFRMQAAAKGLGFSYDRAPNL---PVF 790
Query: 507 VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFF 566
VR D +L+QIL NL+SN++KFT+ G +S+ S++ +
Sbjct: 791 VRTDEKRLRQILVNLLSNAIKFTTRGTVSLAV-----SYRSQVAG--------------- 830
Query: 567 RNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEG 626
F V D+G GI D+Q IFE F + K G
Sbjct: 831 -------------------------FVVSDSGPGIALDEQVKIFEPFGRSKAADGAKTPG 865
Query: 627 LGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
LGLGL I + + M G IA++ EPGE G F ++L AV +RP
Sbjct: 866 LGLGLTITKLLTETMGGAIALS-SEPGE-GASFEVRLMLAAV---DRP 908
>gi|428214830|ref|YP_007087974.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428003211|gb|AFY84054.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1714
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 135/268 (50%), Gaps = 36/268 (13%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A + AE + K+ LA SH++R L AI+G L AN + E+L ++R +
Sbjct: 1215 AKDAAEAANRAKSAFLANMSHELRTPLTAILGFSRLLSAAANLTREQQEHLNIVRKSGEH 1274
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++ V+++SKIEAG M L E +F+L +LL +V +M+ +KG+ + + +
Sbjct: 1275 LLDLIERVLDLSKIEAGTMTLSENDFDLYRLLIDVQNMFSLKAKEKGLTLTI---YSEIN 1331
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++R D VKL+QIL NL++N++KFT+EG + +R V + + D A V + LS
Sbjct: 1332 VPKYIRTDEVKLRQILINLLANAIKFTAEGQVCLR--VSRGEQESDSAA----VSGEGLS 1385
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
K+ EV DTG GI +F+ FVQ +
Sbjct: 1386 KIC--------------------------VEVSDTGIGIDSRYFEHLFKPFVQTG-AGIY 1418
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADK 650
QEG GLGL I + LM G+I++ +
Sbjct: 1419 SQEGTGLGLNISAQFIRLMGGDISVQSR 1446
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 953 GKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKE 1012
G+ + G + ++V+D ++ +L G + + NG+E + + L L
Sbjct: 1496 GRSLQPQQPGYRMIIVDDHDYNSQLLMQILHPFGFELKRAVNGEEVLEMWQEFLPHL--- 1552
Query: 1013 GKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQY-DVHIP-IIALTAHAMAGVASKIVDA 1070
I MD MP ++G+EATR I+ + + ++ +P I+A+TA S+I+ +
Sbjct: 1553 --------IWMDMRMPKIDGYEATRRIKAYCQNHPEIPVPAIVAITASGWHFDKSEILAS 1604
Query: 1071 GMDFHLTKPLQKDKLLDVVKS 1091
G D + KP + + + + +
Sbjct: 1605 GCDGLIRKPFRDVDIFEAIAT 1625
>gi|283778609|ref|YP_003369364.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
gi|283437062|gb|ADB15504.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
Length = 1314
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 129/263 (49%), Gaps = 48/263 (18%)
Query: 391 SMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN--LGLIRTCSKDLLGILN 448
S K+ LA SH++R L +IG++EL D +N + + R+ + LLG++N
Sbjct: 597 SQAKSAFLANMSHEIRTPLNGVIGMLELL---GTTTLDERQNRYVHIARSSAGTLLGLIN 653
Query: 449 SVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVR 508
V++ SKIEAGK+EL +F+L LLE+V +M+ H +KG+++ G +V
Sbjct: 654 DVLDFSKIEAGKLELERVQFDLHSLLEDVAEMFSHRANEKGLELSCRILPGV---PTNVY 710
Query: 509 GDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRN 568
GD +++Q+L NLV+N++KFT +G + +RA + V S +S++
Sbjct: 711 GDPERIRQVLINLVNNAIKFTKQGEVILRA--------------EQQVHSSGVSRM---- 752
Query: 569 KEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLG 628
V DTG GIP D+ + +F F QV + G G
Sbjct: 753 ----------------------RISVIDTGIGIPADRSSQLFAPFTQVDASTTRKYGGTG 790
Query: 629 LGLGIVQSMVHLMKGEIAIADKE 651
LGL I + ++ LM G + + E
Sbjct: 791 LGLAICRQLIELMGGRVGVDSVE 813
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 33/232 (14%)
Query: 874 VISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEA 933
V+++P SRL + + + + Q + P L SS L P L+ A A
Sbjct: 949 VMTKPIRQSRLFDAIAGVLK----HQESLPALPDSDSSATLPAPAAPTKPVMLREV-ASA 1003
Query: 934 GASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCR 993
A + ++ Q++ AQ G K LV ED+ I VTS +L G +V
Sbjct: 1004 PAYSRTEGATPQEILAQC----------GLKLLVAEDNEINQMVTSEILRGSGYACDVVS 1053
Query: 994 NGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVH---- 1049
NG +A D L + G AL ++MDC+MP ++G+ AT+ IR E+ +
Sbjct: 1054 NGNQAIDA-------LVRGGYAL----VLMDCQMPELDGFAATKKIRALEQSGSLTHAVQ 1102
Query: 1050 --IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV-KSIDETMEK 1098
+P++ALTA+A+ G + AGM+ + TKP+ + LL + +++ +EK
Sbjct: 1103 GPMPVVALTANAVYGDRDVCLAAGMNDYTTKPVDRAILLGTIARNLQPVIEK 1154
>gi|313672986|ref|YP_004051097.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939742|gb|ADR18934.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 1095
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 138/281 (49%), Gaps = 50/281 (17%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AER + K+ LA SH++R L IIG+ +L + P + E + + S
Sbjct: 390 IKAKENAERANQAKSTFLANMSHEIRTPLNGIIGIAQLLKNENLP-KHVVEYVKHLNMAS 448
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD--VVLDPCD 498
LL ++N + + S+IE+G+M+++ + F+L + EVV + Y+ +K ++ V +DP
Sbjct: 449 HHLLDLINDIFDFSRIESGEMKIINDIFSLKDTINEVVKVLYYRAKEKNIELTVFVDP-- 506
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
L + GD +++KQIL NL+ N++KFT G++S+ +K
Sbjct: 507 ---LIPSKIIGDSLRVKQILTNLLGNAIKFTEVGYVSLDVFIK----------------- 546
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
+S E++ ++L F + DTG GI DK+ +F F Q +
Sbjct: 547 --------------------NSTEKSVDIL---FVIKDTGIGISGDKKQKLFTPFFQGDQ 583
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
+ G GLGL IV+ ++ M G+I EPG +G F
Sbjct: 584 SVTKKYGGTGLGLTIVKRLIDAMNGDINFI-SEPG-KGTTF 622
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 69/121 (57%), Gaps = 13/121 (10%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+VED+AI V +L + + +G EA + L K+ K YD + MD
Sbjct: 776 LIVEDNAINQIVLQNMLKQFNISSDFANDGLEAVN--------LAKKKK---YDIVFMDI 824
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP M+G+EATR +RK E DV PIIA++AHA A K ++AGM+ HLTKP+ + L
Sbjct: 825 QMPNMDGYEATRQLRKIPEYTDV--PIIAVSAHAFKTDADKSLEAGMNDHLTKPVSINDL 882
Query: 1086 L 1086
Sbjct: 883 F 883
>gi|451981032|ref|ZP_21929412.1| putative Histidine kinase [Nitrospina gracilis 3/211]
gi|451761795|emb|CCQ90659.1| putative Histidine kinase [Nitrospina gracilis 3/211]
Length = 805
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 140/283 (49%), Gaps = 54/283 (19%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
E+AE+ + K+ L+ SH++R L A++G ++ D + + I K LL
Sbjct: 425 EKAEQANAAKSVFLSTMSHEIRTPLNAVLGYSQILLRDVGLDPLKKKKIQAIYLSGKHLL 484
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGS 504
++N V+++SKIEAGK+E+ E+F+LA+++ EVV M V +KG+ + G LG
Sbjct: 485 ALINDVLDLSKIEAGKLEIYTEDFDLAEMIREVVRMNVGVCEQKGLKL---KVTGMNLGQ 541
Query: 505 -CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSK 563
VRGD+ K++Q+L NLV N++KFT +G + ++
Sbjct: 542 KVGVRGDQGKIRQVLINLVGNAIKFTEQGEVELK-------------------------- 575
Query: 564 LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV-KETALG 622
+ E N +F+F V D+G GI + Q IFE F QV +E G
Sbjct: 576 --------------IEQGEGN----RFDFTVRDSGPGISSEHQKLIFEPFGQVDREKVKG 617
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + ++ M G++ + +E G CF +++ L
Sbjct: 618 ---GTGLGLAICKRLIEGMGGKMEVVSRE--REGSCFYYSLDL 655
Score = 40.4 bits (93), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K LVV+D+ ++ +L L + + +G++A D + K + D+ I +
Sbjct: 682 KALVVDDNETNTQILVEMLEALEVETQSAESGRKAMDRMRKWVPDI-----------IFL 730
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP MNG + I + + I I+ ++A+ G L KP+Q++
Sbjct: 731 DYSMPDMNGLQVVEQIHQRFGKD--QIKIVMVSAYTFTHYRKMFEIGGSHAVLKKPVQRE 788
Query: 1084 KLLDVVKSI 1092
+L+V++++
Sbjct: 789 DILEVIQNL 797
>gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500]
Length = 1702
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 155/324 (47%), Gaps = 58/324 (17%)
Query: 350 IAGVISLGLFIILIAKAAKREMFLCAALIKQMN------------ATEQAERKSMNKTFA 397
+A ++ G F +I+ AK E+ + A+I +M A E AE S K+
Sbjct: 1028 VAKSVTKGDFTRVISVEAKGEVNILKAIINEMIHNLKETTIKNTLAKEAAEAASRAKSDF 1087
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
+A SH++R + IIG+ +L D + E L ++++ + LL I+N +++ SKIE
Sbjct: 1088 MANMSHEIRTPMNGIIGMTDLTL-DTELNAEQREYLTMVQSSAASLLTIINDILDFSKIE 1146
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQI 517
AG++EL + +F+L +L E + +KG++++ CD H+ GD +L+QI
Sbjct: 1147 AGRLELDKSDFSLRTILYETLKTLAWRSHQKGLEII---CDIIPDTPDHLIGDPGRLRQI 1203
Query: 518 LCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDA 577
+ NLV N++KFT+EG +S+ + +DI N E
Sbjct: 1204 VTNLVGNAIKFTAEGEVSLTVKL------EDIT-----------------NGE------- 1233
Query: 578 LHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSM 637
+ F V DTG GIP +K + IFE F Q + G GLGL I +
Sbjct: 1234 ----------VTLAFSVADTGIGIPAEKLHLIFEAFSQADGSITRKYGGTGLGLTISTRL 1283
Query: 638 VHLMKGEIAIADKEPGERGVCFRF 661
V LM G++ A+ PG +G F F
Sbjct: 1284 VELMGGKLK-AESIPG-KGSRFDF 1305
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 73/127 (57%), Gaps = 11/127 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ + ++ +L + G K + NG +A S+++ +D I+M
Sbjct: 1471 EILLAEDNVVNQRLAIRLLERFGHKVTLAENGLQAV-----AASEMKD------FDLILM 1519
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M G+EAT IR E+ + H PIIA+TAHA+ K ++AGMD +L+KP+ D
Sbjct: 1520 DVQMPHMGGFEATSTIRIREKVMNKHTPIIAMTAHALQKDKEKCLNAGMDDYLSKPINPD 1579
Query: 1084 KLLDVVK 1090
+L V++
Sbjct: 1580 QLRAVIE 1586
>gi|125974329|ref|YP_001038239.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC
27405]
gi|256003451|ref|ZP_05428441.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM
2360]
gi|385779796|ref|YP_005688961.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
1313]
gi|419723943|ref|ZP_14251046.1| ATP-binding region ATPase domain protein [Clostridium thermocellum
AD2]
gi|419725975|ref|ZP_14253009.1| ATP-binding region ATPase domain protein [Clostridium thermocellum
YS]
gi|125714554|gb|ABN53046.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum ATCC
27405]
gi|255992475|gb|EEU02567.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM
2360]
gi|316941476|gb|ADU75510.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
1313]
gi|380770751|gb|EIC04637.1| ATP-binding region ATPase domain protein [Clostridium thermocellum
YS]
gi|380780046|gb|EIC09741.1| ATP-binding region ATPase domain protein [Clostridium thermocellum
AD2]
Length = 932
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 152/306 (49%), Gaps = 57/306 (18%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA-NPGT-DLAENLGLIRTCS 440
A ++A++ + K+ LA SH++R + +IIG L +P + EN+GL +
Sbjct: 328 ARDEADKANRAKSEFLASMSHEIRTPINSIIGYQYLLKNSVLSPKQREYVENIGL---AA 384
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K+LL I+N +++ SKIEAG+M L E +FN+ +L E++ + +KG+++ + D
Sbjct: 385 KNLLAIINQILDFSKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRI-KVDED 443
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
V ++GD +LKQ++ NLVSN +KFT EG+IS+R +
Sbjct: 444 V--PRFLKGDITRLKQVVMNLVSNGIKFTHEGYISIRVEL-------------------- 481
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
VE+N +F V DTG GI +++ +F+ F Q +
Sbjct: 482 --------------------VEKNEENACIKFSVTDTGIGISDEQKKLLFQAFTQGDAST 521
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT-AVCERERP----- 674
G GLGL I + +V LMKGEI + + E G +G F F++ L A C R
Sbjct: 522 SRKYGGTGLGLAICKRLVELMKGEINV-ESEVG-KGSTFSFSLRLKIASCNENRNGKSKS 579
Query: 675 -DTDEE 679
DT+E+
Sbjct: 580 VDTEEQ 585
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 86/137 (62%), Gaps = 14/137 (10%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
+E+ K L+VED ++ L++T +L +G + ++G+EA K+ ++
Sbjct: 582 TEEQYKNVKILLVEDSSVNLQMTKEILENMGIDTDTAQSGEEAV-----------KKAES 630
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075
Y+ I+MD MP M+G+EATR IRK E +PI+ALTA A+ GVA K +AGM+ +
Sbjct: 631 NEYELILMDIRMPGMDGYEATRRIRKLERG---SMPIVALTADAVEGVAQKAKEAGMNGY 687
Query: 1076 LTKPLQKDKLLDVVKSI 1092
LTKPL+ +KLL+V++S+
Sbjct: 688 LTKPLEPEKLLEVIRSM 704
>gi|407682563|ref|YP_006797737.1| PAS signal transduction protein [Alteromonas macleodii str.
'English Channel 673']
gi|407244174|gb|AFT73360.1| PAS signal transduction protein [Alteromonas macleodii str.
'English Channel 673']
Length = 959
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 144/307 (46%), Gaps = 62/307 (20%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
K A ++A+ + K+ LA SH++R + AIIGL L E + + L ++
Sbjct: 256 KLQKAYDEAQSANKAKSDFLATMSHEIRTPMNAIIGLTHLALESTD-NEQRQQYLEKVQR 314
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
S LL ++NS+++ SK+EA K+E+V+E F L + ++++ ++ +K + ++ D
Sbjct: 315 SSTALLDLMNSILDFSKVEADKIEIVDEPFTLTKTIDKLAQVFQVKAQQKQLQLLFDI-- 372
Query: 499 GSVLGSCHV----RGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
CH RGD K+ Q+L NL+SN++KFT+ GHI
Sbjct: 373 -----RCHTNLQCRGDSEKIYQVLLNLLSNAIKFTASGHI-------------------- 407
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
+ +VE+ N Q F V DTG GI + ++ +F+ FV
Sbjct: 408 -----------------------ILTVEKREN--QLAFSVSDTGMGISEHVKSKLFKAFV 442
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
Q + G GLGL I + +V LM G++ + + ++G CF F + VC E P
Sbjct: 443 QADASISREYGGTGLGLAICKRLVELMGGDLTL--ESEVDKGSCFSFAL---PVCSDEGP 497
Query: 675 DTDEEDP 681
T + P
Sbjct: 498 GTGPQLP 504
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 19/141 (13%)
Query: 954 KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEG 1013
K + L K LVV+DDAI ++++ +L LG V +G++A L ++ K
Sbjct: 642 KWRTRRLLNKHVLVVDDDAISVEISQQILSDLGINVAVASSGEQAL-----ALCEMSK-- 694
Query: 1014 KALPYDYIMMDCEMPVMNGWE-ATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGM 1072
+D I++DC +P ++G+E A +L +K+ D + PIIAL+A + + AGM
Sbjct: 695 ----FDAILLDCYLPGVSGYEVAEQLTQKK----DWYTPIIALSADESQEASESALTAGM 746
Query: 1073 DFHLTKPLQKDKLLDVVKSID 1093
HL KP D ++V +ID
Sbjct: 747 CQHLVKPATAD---EIVHTID 764
>gi|153870479|ref|ZP_01999873.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
gi|152073056|gb|EDN70128.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
Length = 660
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 143/299 (47%), Gaps = 53/299 (17%)
Query: 365 KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
K A+ E+F + E AE + KT L SH++R L AI+G +L +D
Sbjct: 384 KRAEAELF---------KSKELAESANQAKTAFLTNMSHELRTPLTAILGYAQLLKQDKR 434
Query: 425 PGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHV 484
+ E + +I + LL +++ ++++SKIEAGK+ELV +F+L L +++V+++
Sbjct: 435 LTDEQREGIQIIYRSGEHLLTLISDILDLSKIEAGKLELVPSDFHLPTLFQDIVELFGIR 494
Query: 485 GIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
+KG+++V +P + + H DR +L+QIL NLVSN++KFT G +S++
Sbjct: 495 FEQKGIELVYEPL-SELPRAAH--ADRKRLRQILLNLVSNAIKFTETGQVSLKVQYT--- 548
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
+ N N + +V+D+G GI
Sbjct: 549 -----------------------------------PIPDNKNQGKMRVDVEDSGIGIAAA 573
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
IF F QV + + EG GLGL I +++V +M G++ + K RG F F +
Sbjct: 574 HLEKIFLPFQQVG-NKMYYSEGTGLGLSITKTLVEMMGGQLQV--KSRLGRGSHFWFEI 629
>gi|359458299|ref|ZP_09246862.1| two-component hybrid sensory histidine kinase [Acaryochloris sp.
CCMEE 5410]
Length = 691
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 144/281 (51%), Gaps = 35/281 (12%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A +QA + + K+ L SH++R L A++G +L + + + L I C K
Sbjct: 209 AKQQAVKANQAKSVFLGNMSHELRTPLNAVLGYTQLLAREPQLQS-FTKELETINRCGKH 267
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V+++S+I++G++ L + FN +LL+ + D++ KG+D L+ GS L
Sbjct: 268 LLALINDVLDLSRIDSGQVVLNIDTFNFHELLKTLKDIWTTKAQHKGLDYQLEW--GSDL 325
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+VR D KL+Q+L NL+SN++KFT +GHI+ R + + + + S
Sbjct: 326 PH-YVRTDEGKLRQVLMNLLSNAIKFTEQGHITFR--IHQTTVE---------------S 367
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
KL N+E + L P+ FEV D+G GI + IF F+Q ++
Sbjct: 368 KL---NEEPYLPL--------TPHYW-LNFEVRDSGPGISVSELEHIFHPFIQGEQARSV 415
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
EG GLGL I V LM G ++++ G CF+F+V
Sbjct: 416 VDEGTGLGLAISHQFVSLMGGNLSVSSSLGA--GSCFKFSV 454
>gi|333999354|ref|YP_004531966.1| PAS domain-containing protein [Treponema primitia ZAS-2]
gi|333740422|gb|AEF85912.1| PAS domain protein [Treponema primitia ZAS-2]
Length = 743
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 152/293 (51%), Gaps = 36/293 (12%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLI 436
+NA E+AE+ ++ K+ LA SH++R L AIIG+ + GT E L I
Sbjct: 320 INAKERAEQANVAKSSFLANMSHEIRTPLNAIIGMATIAK-----GTQENERRDYCLEKI 374
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVD-MYYHVGIKK-GVDVVL 494
S LLG++N +++MSKIEA K EL EF +++L V++ + + V KK + V L
Sbjct: 375 EGASTHLLGVINDILDMSKIEADKFELSSTEFEFSKMLRRVMNVLEFRVAEKKQTLGVNL 434
Query: 495 DPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT-SEGHISVRAAVKKKSFKQDIIASN 553
DP +L + D +L Q++ NL++N++KFT EG I++ A +K Q+ A +
Sbjct: 435 DPDIPPLLIA-----DEQRLAQVITNLLTNAVKFTPEEGSITIAA---RKLTNQN--AFH 484
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNL---LQFEFEVDDTGKGIPKDKQNSIF 610
V +K L F D L E +L E V DTG GI KD+Q+ +F
Sbjct: 485 EGVPAKYLVAAF---------PDRLPGEELEEDLSPRCTLEVRVTDTGIGISKDQQDKLF 535
Query: 611 EEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ F QV + G GLGL I + +V +M G I + + EP ++G F F +
Sbjct: 536 QSFQQVDSSISRKFGGTGLGLAISKRIVEMMNGSIWV-ESEP-DKGSTFIFTI 586
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 9/160 (5%)
Query: 931 AEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFE 990
AE S+ S + + + E G++ L+ ED I ++ +L +
Sbjct: 588 AELPESVPGQDSPIPAAEQEDSAEPRENEFAGRRILLAEDVDINREIVVTILEPTALTID 647
Query: 991 VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHI 1050
NG+ A D C YD I MD MP M+G+EATR IR + +
Sbjct: 648 EAENGQIALDTFC---------ANPEAYDLIFMDIHMPGMDGYEATRRIRASDHPRAKLV 698
Query: 1051 PIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
PIIA+TA+ + + AGM+ H+ KP+ ++L +++
Sbjct: 699 PIIAMTANVFKEDIERCLAAGMNSHIGKPIDFSEVLAILR 738
>gi|406876629|gb|EKD26132.1| hypothetical protein ACD_79C01351G0001 [uncultured bacterium]
Length = 375
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 136/284 (47%), Gaps = 51/284 (17%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E+AE KT LA SH++R L I+G E+ + +L E LG+I
Sbjct: 137 IKAKEKAEESDRLKTAFLANMSHEIRTPLNGILGFTEILKQPNLTEEELNECLGVIEKGG 196
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K +L I+N ++++SKIEAG +E+ + N+ + +E + + + +KG+ + L S
Sbjct: 197 KRMLNIINDLIDISKIEAGLIEVKLSKSNVNEQIENIYNSFKSEAEQKGIKIFL---KNS 253
Query: 501 VLGS-CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
+L ++ DR K+ IL NLV+N++KFTSEG+I + K K
Sbjct: 254 LLAKDATIKEDREKVYAILTNLVNNAIKFTSEGYIEIGCEKKGK---------------- 297
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
EF V DTG GIP++++ IFE F Q +E+
Sbjct: 298 -----------------------------YLEFFVKDTGTGIPQEQKEFIFERFRQGRES 328
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
EG GLGL I ++ V ++ G+I + + E+G F F +
Sbjct: 329 LARSYEGSGLGLAISKAYVDMLGGKIWVVSE--LEKGSVFYFTI 370
>gi|254416315|ref|ZP_05030069.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196176997|gb|EDX72007.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1474
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 141/298 (47%), Gaps = 42/298 (14%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A ++AE + K+ LA SH++R L I+G V++ + +P + L +I+ C +
Sbjct: 987 QARQEAETANHAKSEFLANMSHELRTPLNGILGYVQVLKREPHPTAKQQQGLSIIQQCGE 1046
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL +LN ++++SKIEA KM+L EF LE +++M +K + P S
Sbjct: 1047 HLLTLLNDILDLSKIEARKMDLCLSEFQFPHFLEGIIEMVRIRADEKAIAFHYQPL--SP 1104
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
L VRGD +L+Q+L NL+ N++KFT +G I+
Sbjct: 1105 LPKI-VRGDEKRLRQVLINLLGNAIKFTDQGSITF------------------------- 1138
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
K G+ A + N F+++DTG GI ++ N IF F Q+ +
Sbjct: 1139 -------KVGYTSAQAPATEASN----TMRFQIEDTGIGIAAEQLNDIFLPFHQIGDRN- 1186
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEE 679
EG GLGL I Q +V L+ GE+ + + G+ G F ++ L AV + D E+
Sbjct: 1187 RQVEGTGLGLAISQRLVQLLGGELHV-ESNVGQ-GSTFYVDLELPAVSPDQAIDVVED 1242
>gi|295135579|ref|YP_003586255.1| two-component system sensor histidine kinase/response regulator
hybrid [Zunongwangia profunda SM-A87]
gi|294983594|gb|ADF54059.1| two-component system sensor histidine kinase/response regulator
hybrid [Zunongwangia profunda SM-A87]
Length = 743
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 154/309 (49%), Gaps = 53/309 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E AER + K L+ +H++R L A+ GL L E+ NP + E+L ++ +
Sbjct: 358 AKENAERATTAKAQFLSTITHELRTPLYAVTGLTHLLLEE-NPTPNQKEHLNSLKFSGEY 416
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC--DGS 500
LL ++N++++++K+EA K+E++ F+L + + +V+ + +K D + D
Sbjct: 417 LLSLINNILDLNKLEANKVEIINSSFDLKKRISDVL-----IALKNSADDKNNKIHFDFE 471
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
++GD +KL QIL NL+ NS+KFT +G+I ++ + K+ K +++
Sbjct: 472 KTIPNRLKGDPLKLSQILINLIGNSIKFTEDGNIWIKVGLLKQ-VKDEVL---------- 520
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
LH FE++D G+GI K+KQ +IFE F Q
Sbjct: 521 -----------------LH------------FEIEDNGEGISKEKQKAIFENFTQGSTQI 551
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAI-ADKEPGER-GVCFRFNVLLTAVCERERPDTDE 678
G GLGL IV++++ LM+ EI++ +D G + +F ++ A+ E+ E
Sbjct: 552 NRKFGGTGLGLSIVKNLLSLMESEISLESDLGKGSKFSFDLKFGIVEPALNTEEQQ---E 608
Query: 679 EDPRTHNDW 687
E P T D+
Sbjct: 609 EKPATKQDY 617
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 21/145 (14%)
Query: 948 AAQSDGKCSEKP------LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDH 1001
A ++ + EKP L GK+ LVVED+ I +T ++ K A V NG A +
Sbjct: 600 ALNTEEQQEEKPATKQDYLEGKEILVVEDNKINQMITKKIIEKNKAICRVADNGSTAIEM 659
Query: 1002 VCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMA 1061
V +EG ++ I+MD MP ++G EAT+ IRK ++ IPIIALTA +
Sbjct: 660 V--------REG---SFNLILMDIHMPGISGIEATKEIRK----FNTEIPIIALTAVTLD 704
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLL 1086
+ G + + KP + ++
Sbjct: 705 ENLDEFYLNGFNDIIPKPYKTEEFF 729
>gi|153832261|ref|ZP_01984928.1| sensory box sensor histidine kinase/response regulator [Vibrio
harveyi HY01]
gi|148871572|gb|EDL70427.1| sensory box sensor histidine kinase/response regulator [Vibrio
harveyi HY01]
Length = 867
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 144/295 (48%), Gaps = 53/295 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
+ +++ R + K+ LA SH++R + AI+G E+ E + + L L+ +
Sbjct: 363 DEVKKSARATKAKSEFLANMSHEIRTPMNAIMGFSEILLE-SEKRNEQRSLLHLLHKSAG 421
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-PCDGS 500
+L+ ++N +++ SK+EAGK+ L+EE F+L +L+E + + KK + +++D P D
Sbjct: 422 NLITLINDILDYSKVEAGKLTLIEEPFDLRELVESSTALCAYQANKKDLKLLVDMPLD-- 479
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
HV GDR ++ QIL NL+ N++KFT EGHI ++ K
Sbjct: 480 --IHAHVIGDRGRINQILLNLIGNAVKFTEEGHILIKITEK------------------- 518
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
R P + F+V DTG GIP+++ I ++F QV +
Sbjct: 519 ----------------------RTPQGNVYCFDVIDTGIGIPEERLPHIMDKFEQVDNSI 556
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPD 675
EG GLGL I + +V + G++++ G CF F++ L C+ + PD
Sbjct: 557 TRKYEGTGLGLAISKRLVQMYGGDLSVTSTLGS--GSCFSFSLKL---CQ-QTPD 605
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
+K L G K LV ED ++ + S +L K G + +G A +H K+ D+
Sbjct: 740 QKDLRGVKLLVAEDSSVNRILISKMLSKTGIDLTIAEDGVIAVEHYQKLKPDM------- 792
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFH 1075
++ D MP +G+ T IR ++ D PIIA +AHA+ + + GM+ +
Sbjct: 793 ----VITDISMPNKDGFSVTEDIRNLQQSQDYPWCPIIAFSAHALEEEQGRSTEVGMNDY 848
Query: 1076 LTKPLQKDKLLDVV 1089
LTKP+QK LL+++
Sbjct: 849 LTKPVQKTDLLNMI 862
>gi|116051482|ref|YP_789685.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
UCBPP-PA14]
gi|421173312|ref|ZP_15631061.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CI27]
gi|115586703|gb|ABJ12718.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
UCBPP-PA14]
gi|404535931|gb|EKA45588.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CI27]
Length = 918
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----GGRER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTRFSVDLPLSP 635
Query: 668 VCE 670
E
Sbjct: 636 ALE 638
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQ---SDGKCSE----KPLNGKKFLV 967
QHC D P L+ ++ + +L ++ + G+ SE + L+ LV
Sbjct: 734 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERLDAPCILV 793
Query: 968 VEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM 1027
ED+ + V L K G + NG+ A D + + ++ I+MD EM
Sbjct: 794 AEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGEM 844
Query: 1028 PVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
P M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 845 PEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAELY 904
Query: 1087 DVVKSI 1092
++ +
Sbjct: 905 ATLERL 910
>gi|335042046|ref|ZP_08535073.1| multi-sensor hybrid histidine kinase [Methylophaga
aminisulfidivorans MP]
gi|333788660|gb|EGL54542.1| multi-sensor hybrid histidine kinase [Methylophaga
aminisulfidivorans MP]
Length = 1177
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 143/292 (48%), Gaps = 47/292 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E+AE + K+ LA SH++R + AIIG EL +E + + I++
Sbjct: 687 LEAKEKAEVANRTKSEFLANMSHEIRTPMNAIIGFTELLYEQVK-DNKIKSYVKTIQSAG 745
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
DL+ ++N ++++SKIEAGK+E+ N L EE+ ++ KGV++VL+ D
Sbjct: 746 NDLMLLINDILDLSKIEAGKLEINYAATNPHVLFEELSHIFSVPLRNKGVELVLE-VDAE 804
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ S + D V+L+Q+L NL+ N++KFT G I++RA V N+N I
Sbjct: 805 IPQSLML--DVVRLRQVLLNLLGNAVKFTESGRITMRARV-----------DNKNNIG-- 849
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
SKL R +V+DTG GIP+D+ + IFE+F Q
Sbjct: 850 -SKLGLR------------------------IDVEDTGLGIPEDQLDRIFEDFNQTVGQD 884
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF---NVLLTAVC 669
G GLGL I ++ LM G + + K +G F NV++ A+
Sbjct: 885 TAKFGGTGLGLSICSRLIKLMGGTLTV--KSQLGKGSIFTVHLDNVVVAAIA 934
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 1011 KEG----KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASK 1066
KEG K P D ++MD MPVM+G++A I+ E IP+IALTA M +
Sbjct: 986 KEGVEAMKHHPIDLVLMDLRMPVMDGYQAAEKIKAE-----FDIPVIALTASVMKDDFDR 1040
Query: 1067 IVDAGMDFHLTKPLQKDKL 1085
+ D H+ KP++K +L
Sbjct: 1041 LKSEHFDAHIRKPVKKAEL 1059
>gi|410462674|ref|ZP_11316238.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409984211|gb|EKO40536.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 1207
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 128/256 (50%), Gaps = 40/256 (15%)
Query: 391 SMNKTFALAKASHDVRASLAAIIGLVELCHEDA-NPGTDLAENLGLIRTCSKDLLGILNS 449
S K LA SH++R L A++G V+L D P + L ++ + LL I+N
Sbjct: 695 SQAKGAFLANMSHEIRTPLNAVLGYVQLMLRDRLEPAQR--QRLAVVEESAATLLSIIND 752
Query: 450 VMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRG 509
+++ SKIEAG++E+ E F+LAQ L VV + +KG+ + L+ D + GS VRG
Sbjct: 753 ILDYSKIEAGRLEIKAESFDLAQCLAAVVKEQEVLAREKGLVLELE-FDPGLPGS--VRG 809
Query: 510 DRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNK 569
D ++L+QIL NLV+N++K+T G +++RA++ + S C +
Sbjct: 810 DGLRLRQILRNLVNNAVKYTEHGSVTLRASLLDR--------------SPCPTG------ 849
Query: 570 EGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629
N + F V DTG GIP D+ +IF+ F QV Q G GL
Sbjct: 850 --------------NGERVTLRFAVIDTGVGIPTDQLPAIFDSFTQVDGGLTKRQAGTGL 895
Query: 630 GLGIVQSMVHLMKGEI 645
GL I + + LM G +
Sbjct: 896 GLAICRRLAGLMGGGV 911
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 11/136 (8%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
+P + L+VED+ + S +L G + + NG+ A +++ A
Sbjct: 949 REPPQRLRVLLVEDNRVNRVFASDLLESRGHEVILAENGRAALEYLV-----------AN 997
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
D ++MD +MPVM+G ATR IR D +P+I L+A+AM + + AG D ++
Sbjct: 998 AVDVVLMDIQMPVMDGLAATRAIRAGHLDIDPGLPVIGLSAYAMDQERERFLAAGFDDYI 1057
Query: 1077 TKPLQKDKLLDVVKSI 1092
TKP+ + VV +
Sbjct: 1058 TKPIDVETFFAVVARV 1073
>gi|298530450|ref|ZP_07017852.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509824|gb|EFI33728.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1162
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 46/283 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A + AE S K+ LA SH++R L ++ ++ L E+ + G + E + + S
Sbjct: 397 IRARDAAEEASRAKSDFLANMSHEIRTPLNGVVSMMSLL-EETSLGPEQREYVDMATISS 455
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL I+N +++ S+IEAG++EL + F+L + + V+ + K V++++ D
Sbjct: 456 ESLLNIINDILDFSRIEAGRLELTRQNFDLEREISRVMLLLTKRARSKEVELLV---DYD 512
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ VRGD ++L+QIL NLV N++KFT +G+I V+ ++
Sbjct: 513 LQAPRRVRGDNLRLRQILYNLVGNAVKFTEKGYILVQVSL-------------------- 552
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
E + + V DTG GIP Q IFE F QV ++
Sbjct: 553 --------------------AEAGEEKARLKISVQDTGVGIPVHMQEKIFEHFTQVDYSS 592
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I +S+V LM G++ + +E GE G F F +
Sbjct: 593 TRRHGGTGLGLAISRSLVRLMGGDLQVMSRE-GE-GSTFFFEL 633
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 73/132 (55%), Gaps = 8/132 (6%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L+G + ++V+D+AI K+ + L K G + E + +A D IL+ ++GK+ +D
Sbjct: 650 LSGMRAMIVDDNAINRKILAGYLEKWGVEHESAADAYQALD----ILNQNHQQGKS--FD 703
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
+ ++D MP M+G E IR+++++ + +IA+++ + + G D +L KP
Sbjct: 704 FALVDHAMPGMDGIELASRIREQDQEKGMG--LIAVSSLWGQVSSGEFFQKGFDSYLPKP 761
Query: 1080 LQKDKLLDVVKS 1091
+ + LL +K+
Sbjct: 762 VNSEDLLAGIKA 773
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G + L+V+D+ I + +L NG+EA + K+ D +D +
Sbjct: 809 GPRILLVDDNHINRRSVQIMLKDTAGGLVSVENGQEALE---KMQED--------SFDLV 857
Query: 1022 MMDCEMPVMNGWEATRLIRKEEE 1044
+MD +MPVM+G EATR IR E+
Sbjct: 858 LMDVQMPVMDGLEATRRIRSMEQ 880
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
E + IPIIALTA+AM K + AGM ++ KP+QK +LL ++K
Sbjct: 961 ESRNPRIPIIALTANAMPSDREKCLSAGMTDYIAKPVQKIELLAMLK 1007
>gi|398348886|ref|ZP_10533589.1| multi-sensor hybrid histidine kinase [Leptospira broomii str. 5399]
Length = 847
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 135/280 (48%), Gaps = 50/280 (17%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R + +IG+ EL D++ + E +I+ + LL I+N +++
Sbjct: 333 KSEFLAMMSHEIRTPMNGVIGMTELLL-DSDLTGEKREYAEIIQKSGESLLSIINDILDY 391
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGSCHVRGDR 511
SKIE+G + L +EF++ + EE +D++ +KG+D++ +DP + + GD+
Sbjct: 392 SKIESGTLRLESKEFSILETAEETLDLFRSSAAEKGIDLICHIDPNVPDI-----IIGDK 446
Query: 512 VKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEG 571
++L+Q+L NL NS+KFT +G + + A V KK
Sbjct: 447 LRLRQVLINLFGNSLKFTEKGEVFLSAEVSKK---------------------------- 478
Query: 572 FDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631
+ + F V DTG GIPK+KQ +F F QV ++ G GLGL
Sbjct: 479 ------------DKSFCTIRFSVRDTGIGIPKEKQKQLFNPFYQVDTSSTRKYGGTGLGL 526
Query: 632 GIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER 671
I ++ +M G I + + +G F F + +V ++
Sbjct: 527 SISYRLIKMMGGRIWL--ESDVNKGTTFSFEIQAESVEQK 564
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 20/129 (15%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+ ED+ I L + +L KLG V NGK+ + + +E K +D ++MD
Sbjct: 727 LIAEDNEINLSLAKRILQKLGYSPIVATNGKQVLNRL--------REAK---FDVVLMDV 775
Query: 1026 EMPVMNGWEATRLIR----KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MP M+G +AT++IR + E+ Y IIA+TA AM G + AGM+ +++KP+
Sbjct: 776 HMPEMDGIQATQVIRNTWPQNEQPY-----IIAMTAAAMQGDREICLRAGMNDYVSKPIV 830
Query: 1082 KDKLLDVVK 1090
++L+ ++
Sbjct: 831 FEELIHALR 839
>gi|350563713|ref|ZP_08932534.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium aerophilum
AL3]
gi|349778848|gb|EGZ33199.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium aerophilum
AL3]
Length = 1253
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 136/283 (48%), Gaps = 43/283 (15%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A +A+ + K+ LA SH++R + IIG+ EL + +P + L + +
Sbjct: 782 QAKREADAANKAKSEFLANMSHEIRTPMNGIIGMSELGLTETDP-QKMHHQLERVNQSGR 840
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-PCDGS 500
LLGI+N +++ SKIEAGK+EL ++F L+QL +E+ D++ + +KG+ + C +
Sbjct: 841 LLLGIINDILDFSKIEAGKLELDPQQFQLSQLKDELTDLFEGLAHEKGLAFSVQCACKDN 900
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ + GD ++L+Q+L NL+ N++KFT G VR ++K
Sbjct: 901 CVQCLY--GDNLRLRQVLTNLIGNAVKFTDRGE--VRLSIK------------------- 937
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
L S NP + FE+ DTG G+ ++Q +F F Q +
Sbjct: 938 -----------------LDSPANNPFGVFLSFEIQDTGIGMTAEQQQKLFNAFTQADTSI 980
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V LM G+ +P +G F F+V
Sbjct: 981 TRKHGGTGLGLVISERLVRLMGGDDIHIQSQPN-KGSIFSFSV 1022
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 15/149 (10%)
Query: 941 CSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFD 1000
C+ QQ+ K +E + L+VED+ I +V + +L +LG E+ NG+ A +
Sbjct: 1027 CNPQQQIQLNPQPKHTEPTRLSGRVLLVEDNEINQEVAATMLTQLGLALELAENGQIAVE 1086
Query: 1001 HVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAM 1060
+ K +D I+MD +MPVM+G++A + IR Q++ +PI+ALTA AM
Sbjct: 1087 -----------KAKQPDFDLILMDIQMPVMDGYQACQAIR----QFNASMPIVALTAAAM 1131
Query: 1061 AGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+K + GM+ HL KPL D L V+
Sbjct: 1132 VEDRAKALSVGMNDHLAKPLNSDDLYRVL 1160
>gi|383789600|ref|YP_005474174.1| signal transduction histidine kinase [Spirochaeta africana DSM 8902]
gi|383106134|gb|AFG36467.1| signal transduction histidine kinase [Spirochaeta africana DSM 8902]
Length = 1509
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 157/325 (48%), Gaps = 64/325 (19%)
Query: 339 KLSLMLLVLMFIAGVI---SLGLF---IILIAKAAKREMFLCAALIKQMNATE------- 385
+L L +L+ I G+I + GL ++L K +R L L ++ A E
Sbjct: 795 RLLLGTSILVAIWGIIYSRTRGLRNRNLVLEHKVVERTAELEQELAERKRAQEHLRIANR 854
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE-DANPGTDLAENLGLIRTCSKDLL 444
Q + + K+ LA SH++R + +IG+ L + D NP + +RT + LL
Sbjct: 855 QVQSANAAKSQFLANMSHEIRTPMNGVIGMTGLLLDTDLNP--EQRRYAEAVRTSGEALL 912
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL--DPCDGSVL 502
++N V++ SKIEAGK+EL + +FNL +++EV +M +K ++++L DP +L
Sbjct: 913 TLINDVLDFSKIEAGKLELEQLDFNLLNIVDEVCEMLAIRAHEKNLELILQIDPQTPWML 972
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
GD + +QIL NLVSN++KFT EG +++R +AS+ ++ +C
Sbjct: 973 -----HGDPTRFRQILVNLVSNAIKFTHEGEVTLRITP---------VASDSGIMLRC-- 1016
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
EV DTG GIP+++ ++F F Q+ +
Sbjct: 1017 ------------------------------EVQDTGIGIPEERLGNLFSPFTQLDGSTTR 1046
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAI 647
G GLGL I + +V ++ G+I +
Sbjct: 1047 TYGGSGLGLSISKQLVRMLGGKIGV 1071
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 75/128 (58%), Gaps = 11/128 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV ED I V A+L KLG + + NG E +L+ L + +PYD ++M
Sbjct: 1248 RVLVAEDAPINQDVALAMLEKLGCRADAVANGAE-------VLTAL----ETIPYDLVLM 1296
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
DC+MPVM+G+EATR IR + +PIIA+TA+A+AG K + GMD ++ KP+
Sbjct: 1297 DCQMPVMDGYEATRRIRSSNRVLNPGVPIIAMTAYALAGDREKCLACGMDDYVPKPIDAQ 1356
Query: 1084 KLLDVVKS 1091
++ ++ S
Sbjct: 1357 EIARIINS 1364
>gi|386828275|ref|ZP_10115382.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
gi|386429159|gb|EIJ42987.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
Length = 595
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 31/296 (10%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE + K+ LA SH++R L A+IG+ + +D + + L IRT
Sbjct: 53 LAAREVAEEATRAKSEFLANMSHEIRTPLNAVIGMAAIL-QDTPLSAEQLDYLSTIRTSG 111
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL ++N +++ SKIEAG++EL +L +E + + V + K +++V + D
Sbjct: 112 ETLLTLINDILDFSKIEAGRLELEYRSLDLRLCVENTLGLVTSVAVAKNLNLVYEMSD-- 169
Query: 501 VLGSCH--VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
H V GD +++QIL N+VSN++KFT +G + V SF + ++S
Sbjct: 170 ---DVHPVVIGDVTRIRQILLNMVSNAVKFTEKGEVKVIVDKTPPSFPPYF--PHTTIVS 224
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
K E + +H F + D+G GIP+ + + +F+ F Q+
Sbjct: 225 KI-------TDESLSPPETIH------------FAIKDSGIGIPESRLHRLFQPFTQIDS 265
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I +S+ LM G + + +E G F F + + E P
Sbjct: 266 STTRKHGGTGLGLTISKSLSLLMGGNVWVESQE--NVGSTFHFTLQVQPARENPYP 319
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 74/133 (55%), Gaps = 20/133 (15%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ KV + +L KLG + ++ NG E +L+ L+K+ YD + M
Sbjct: 475 RTLLAEDNITNQKVATLMLKKLGCEVDIANNGIE-------VLTYLKKQH----YDVVFM 523
Query: 1024 DCEMPVMNGWEATRLI----RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
D +MP M+G AT+ I + E + IIA+TA+AM G + GM+ +++KP
Sbjct: 524 DVQMPEMDGLTATKHIVSTFSEAERPW-----IIAMTANAMQGDREMCIAVGMNDYISKP 578
Query: 1080 LQKDKLLDVVKSI 1092
++K+ L V++++
Sbjct: 579 IRKETLEAVLQNV 591
>gi|242280332|ref|YP_002992461.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
gi|242123226|gb|ACS80922.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
Length = 923
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 139/292 (47%), Gaps = 54/292 (18%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA----ENLGLIRT 438
A ++AE S +K+ +A SH++R + AIIG+ +L E TDL+ E + +I +
Sbjct: 266 AKDEAEAASKSKSEFMANVSHEIRTPMNAIIGMADLTME-----TDLSSKQREFIKIIIS 320
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
K LL ++N +++ SKIEAGK+ L E FNL QL+ ++ D++ + ++V+D
Sbjct: 321 SGKVLLRLINDILDFSKIEAGKLSLEEVNFNLHQLIHDISDLFVEQMVASQTELVIDIRP 380
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
G + GD ++L+Q+L N+ +N+ KFTS+G I + +
Sbjct: 381 GV---PQRIIGDPLRLRQVLVNITANAFKFTSKGEIIITVSA------------------ 419
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
D ++A + + F + DTG GIP++ Q +FE F Q
Sbjct: 420 --------------DQINATKT--------EIVFAIKDTGIGIPEEVQPHLFEAFKQADG 457
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
+ G GLGL I + +V+LM G I + E G F F + E
Sbjct: 458 STTRKYGGTGLGLSISKRIVNLMGGNIWFRSR--PEDGSTFFFTITPNVAVE 507
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 73/128 (57%), Gaps = 13/128 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED+ I +V +L G + NG EA V + YD ++M
Sbjct: 666 RLLLVEDNPINQQVAEQILEPTGIEISSAPNGAEAVRMV-----------QEAGYDIVLM 714
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G+EAT +IR + + + +PIIA+TAHAM G K + +GMD ++ KP+ K+
Sbjct: 715 DIQMPEMDGYEATTIIRNDLKMKE--LPIIAMTAHAMRGDKEKCIASGMDDYIPKPIDKE 772
Query: 1084 KLLDVVKS 1091
++ ++++
Sbjct: 773 LMISIIRN 780
Score = 47.4 bits (111), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L K LVV+D+ V V L + G + + +EA KI+ D RK+ + +
Sbjct: 519 LKNKPVLVVDDNFAVRSVLVRYLKQFGFQPTSVASAEEA----IKIIED-RKDDQ---FK 570
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
+++D ++P MNG EA+ IRK + + +PI+ +TA + SK +A ++ ++KP
Sbjct: 571 LLIIDLKLPGMNGDEASIEIRKTYSKEE--LPILMITATELNSALSKAQNAQINRMISKP 628
Query: 1080 LQKDKLLDVV 1089
L++ L + +
Sbjct: 629 LKQATLFNSI 638
>gi|428307795|ref|YP_007144620.1| GAF sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
gi|428249330|gb|AFZ15110.1| GAF sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
Length = 1390
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 124/255 (48%), Gaps = 40/255 (15%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
KT A SH++R L AI+G ++ + P E L +I + LL ++N V+EM
Sbjct: 927 KTEFFANMSHELRTPLNAILGFTQMLVRRSVPLAQRQEYLSIINRSGEHLLALINDVLEM 986
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEAG+ L + F L QLL V +M+ KG+ ++ + D + +++ D K
Sbjct: 987 SKIEAGRTTLNPQNFALDQLLTFVKEMFQMKAAAKGLKLIFEQ-DADL--PQYIQTDEQK 1043
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
L+Q+L N++ N++KFT +G +++R VKKK
Sbjct: 1044 LRQVLINILGNAIKFTEKGSVTLR--VKKK------------------------------ 1071
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
L + P FEV DTG GI + S+FE FVQ ++ HQ G GLGL I
Sbjct: 1072 ----LEAFPLPPASFGITFEVADTGLGIAPHELESVFEVFVQTEQGRNLHQ-GTGLGLAI 1126
Query: 634 VQSMVHLMKGEIAIA 648
+ V L+ GEI ++
Sbjct: 1127 SRQFVRLLGGEITVS 1141
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MD MPV++G+EAT+ IR + + Q V IIALTA S ++ G D + KP
Sbjct: 1230 ILMDMRMPVIDGYEATKRIRSQLKGQATV---IIALTASVFDNERSIVLSVGCDDFIRKP 1286
Query: 1080 LQKDKLLD 1087
Q+D LL+
Sbjct: 1287 FQEDVLLE 1294
>gi|396500328|ref|XP_003845692.1| similar to two-component sensor protein histidine protein kinase
[Leptosphaeria maculans JN3]
gi|312222273|emb|CBY02213.1| similar to two-component sensor protein histidine protein kinase
[Leptosphaeria maculans JN3]
Length = 2472
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 150/316 (47%), Gaps = 62/316 (19%)
Query: 375 AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP-GTDLAENL 433
A I+ M E+A + K+ LA SH++R L +IG+ EL A+P + A
Sbjct: 1959 AIAIRNMKLKEEAAKA---KSLFLANVSHELRTPLNGVIGMSELLK--ASPLNGEQAGYA 2013
Query: 434 GLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV 493
IR C+ LL I+N +++ SK+EAGKM ++E +L + + EVV + ++G+ +
Sbjct: 2014 DSIRVCADTLLSIINDLLDYSKLEAGKMNVMEMPLSLNETITEVVRALAYTNAERGLKTI 2073
Query: 494 ----LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDI 549
LDP V GD V+L Q++ NL+SNS KFT G ++VRA V
Sbjct: 2074 EELYLDP-------EMLVMGDPVRLHQVMMNLLSNSYKFTPRGSVTVRAVV--------- 2117
Query: 550 IASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSI 609
++E D +D S V DTG GIP++++ +
Sbjct: 2118 ------------------DQEADDWVDITCS-------------VIDTGIGIPEEQKKKL 2146
Query: 610 FEEFVQVKETALGHQEGLGLGLGIVQSMV-HLMKGEIAIADKEPGER---GVCFRFNVLL 665
F F Q++ ++ G GLGL I ++++ ++M G++ + D PG+ RF +
Sbjct: 2147 FLPFSQIESSSARSYGGTGLGLSICKALIENVMHGKVWL-DSVPGKGTTVSFALRFQKVR 2205
Query: 666 TAVCERERPDTDEEDP 681
+RP T E DP
Sbjct: 2206 REQGASDRPRTREPDP 2221
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 118/257 (45%), Gaps = 28/257 (10%)
Query: 842 VPSLSCKVVWIDNSVIRNAHSREYRL----LPICDHVISRPFHGSRLIEVLKLLPECKGA 897
+P K +++ S I ++ +R Y L IC +I HG ++ + KG
Sbjct: 2138 IPEEQKKKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGKVWLDSVP----GKGT 2193
Query: 898 S---QRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGK 954
+ F K++ E + + +P+P+ + S S C L +
Sbjct: 2194 TVSFALRFQKVRREQGASDRPRTREPDPMARFSSQENNGHEQSSGSCIDLTMI------- 2246
Query: 955 CSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK 1014
P N + + ED+ I ++ + + KLG K + +G + D + + + R
Sbjct: 2247 ----PRNELRICIAEDNLINQRIAISFVQKLGFKCDAYLDGFKTIDALERASDNGR---- 2298
Query: 1015 ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDF 1074
P+ I+MD +MP +G+EAT+LIRK ++ IIA+TA A+ G K +++GM+
Sbjct: 2299 --PFHLILMDVQMPHCDGYEATQLIRKHPNPEIRNVLIIAMTASAIEGDREKCLNSGMNN 2356
Query: 1075 HLTKPLQKDKLLDVVKS 1091
+L KP++ L +++S
Sbjct: 2357 YLAKPVRAQTLKAMLES 2373
>gi|410724256|ref|ZP_11363454.1| signal transduction histidine kinase [Clostridium sp. Maddingley
MBC34-26]
gi|410602261|gb|EKQ56742.1| signal transduction histidine kinase [Clostridium sp. Maddingley
MBC34-26]
Length = 706
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 164/361 (45%), Gaps = 70/361 (19%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
K + E AE S+ K+ LA SH++R L IIG+ EL N + E + L++
Sbjct: 48 KLLKEKEAAEAASLAKSEFLASMSHEIRNPLNGIIGMTELIS-STNLNEEQREYIDLLKI 106
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
+ LL I+N +++ SKIEAGK+++ E++FN+ ++ + + +YH +K + + + D
Sbjct: 107 SGESLLRIINDILDFSKIEAGKIQIKEDKFNIENMVNKTIKSFYHHATEKKIKLKYE-ID 165
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
S+ + GD+ ++ Q+L NL+ N++KFT++G ISV ++ K+ II
Sbjct: 166 KSI--PKVLIGDQFRINQVLVNLIGNAIKFTNKGSISVLVTKVDQTKKRSIIL------- 216
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
F V DTG GI + K +F F Q+++
Sbjct: 217 ---------------------------------FNVIDTGIGIEESKLKLLFHRFTQLED 243
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDE 678
G GLGL I + +V LM GEI + K GE G F F V L
Sbjct: 244 IYSKKYSGTGLGLAISKKLVELMGGEIGVKSK-VGE-GSKFYFTVKL------------- 288
Query: 679 EDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTI 738
D P+T +H + K ++++ EE +R ++ +E L +KV
Sbjct: 289 -------DLPKTIKQRHLEEYQ---RKISDLKVLVITRDEEIKRQVREKLE-ELKLKVKY 337
Query: 739 V 739
+
Sbjct: 338 I 338
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 97/216 (44%), Gaps = 51/216 (23%)
Query: 877 RPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGAS 936
+P +L EVL + K ++ NF +S+E Q+ D +P+
Sbjct: 416 KPIDKFQLYEVLMKILNEKNQNKYNFT-----DNSEETQYLEDKDPI------------- 457
Query: 937 ISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGK 996
L+ K L+VED I K+ +L K G + NGK
Sbjct: 458 ----------------------VLSNVKILLVEDSVINQKLVENILKKQGCQVITANNGK 495
Query: 997 EAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALT 1056
EA + + K D I+MD ++P NG E T++IR+ E + HIPIIALT
Sbjct: 496 EALNTL-----------KDTKVDLILMDVQLPETNGMEVTKVIRESEHYTNEHIPIIALT 544
Query: 1057 AHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
A A+ G K + AGMD ++TKP+ K++L ++ +
Sbjct: 545 AFALNGDKEKCLSAGMDSYVTKPINKNELFKEIEKL 580
>gi|309790216|ref|ZP_07684788.1| sensory box histidine kinase/response regulator [Oscillochloris
trichoides DG-6]
gi|308227801|gb|EFO81457.1| sensory box histidine kinase/response regulator [Oscillochloris
trichoides DG6]
Length = 906
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 139/296 (46%), Gaps = 43/296 (14%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE +M K+ LA SH++R + A+IG+ L D + + + IRT
Sbjct: 389 VRAKEAAEAATMAKSSFLATMSHEIRTPMNAVIGMTTLML-DTDLTREQRQYAETIRTSG 447
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
LL ++N++++ SKIE+G MEL ++ F+L +EEV ++ +KG+ V+ G
Sbjct: 448 DMLLALINNILDFSKIESGHMELEQQPFSLHACIEEVNELLGPKAAEKGI-VLTGMVSGQ 506
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
V + GD +++QIL NL+SN++KFT+ G ++VRA S + D S ++I
Sbjct: 507 V--PAMISGDSTRVRQILVNLISNAIKFTNVGEVTVRA-----SARPDEALSGEHLI--- 556
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
V DTG GIP+D+ + +F F Q+ +
Sbjct: 557 -----------------------------ITITVADTGIGIPEDRMDRLFRPFSQIDAST 587
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT 676
G GLGL I + + LM G I + K G FR +AV P T
Sbjct: 588 TRRFGGTGLGLAISRRLSELMGGSITVQSKV--GVGSSFRVTFRTSAVDPHLSPTT 641
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 20/126 (15%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED + +V +L K+G ++ NGKE +++ + YD ++M
Sbjct: 659 RVLLAEDHQVNQQVALRMLEKIGYYADLASNGKE-------VIAAMHHRD----YDVVLM 707
Query: 1024 DCEMPVMNGWEATRLIR----KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
D +MP M+G +ATR +R + + Y IIA+TA+AM G + AGMD +++KP
Sbjct: 708 DVQMPDMDGLDATRRLRAMLPENRQPY-----IIAVTANAMTGDREVCLAAGMDDYISKP 762
Query: 1080 LQKDKL 1085
+ + L
Sbjct: 763 MLRADL 768
>gi|417781088|ref|ZP_12428843.1| 7TM diverse intracellular signaling [Leptospira weilii str.
2006001853]
gi|410778729|gb|EKR63352.1| 7TM diverse intracellular signaling [Leptospira weilii str.
2006001853]
Length = 821
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 140/292 (47%), Gaps = 46/292 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 424 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYIQILSVSA 482
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L +E F++ +L+E+ D+ Y + +K + + L +G
Sbjct: 483 KSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHDLLYPLAKQKRIGLRL---EGK 539
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+V GD+++L+QIL NL N +KFT+ G + + +V +K+ +D I+
Sbjct: 540 FEIQEYVYGDQLRLRQILWNLTGNGIKFTNRGEVVL--SVSQKNISKDKIS--------- 588
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
EF V D+G GIP +KQ +F+ F Q +
Sbjct: 589 -----------------------------IEFRVSDSGIGIPLEKQKQVFDAFSQSDTST 619
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
G GLGL I + +V L G + + KE G F F + E E
Sbjct: 620 ARKFGGFGLGLSITKQLVELQGGTLNLESKEG--YGSKFTFAITYGIPSESE 669
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV ED+ + L KLG V NG+E + + + +D I+M
Sbjct: 695 RILVAEDNETNCLLIERALKKLGYDPVVVHNGREVIEKM-----------QLNIFDMILM 743
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D MP ++G EAT+ IR +++ + I IIALTA + + GM+ +L KPL
Sbjct: 744 DIHMPEVDGMEATKWIRSQKQNAEFPI-IIALTADVIESNKEMYISKGMNDYLAKPL 799
>gi|388255746|ref|ZP_10132927.1| MmoS [Cellvibrio sp. BR]
gi|387939446|gb|EIK45996.1| MmoS [Cellvibrio sp. BR]
Length = 794
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 146/300 (48%), Gaps = 62/300 (20%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LG 434
+Q NA E A R K+ LA SH++R + +IG++E+ + T L +N +
Sbjct: 259 RQKNAAEDASRA---KSQFLATMSHEIRTPMNGVIGMLEMLRD-----TPLDDNQKHYID 310
Query: 435 LIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL 494
+I + LL I+N +++ SKIEAGKMEL E F L +L+E V ++ K+ +++
Sbjct: 311 VIHRSGETLLTIINDILDYSKIEAGKMELEETTFELDELVENCVQLFGATANKRQIELF- 369
Query: 495 DPCDGSVLGSC--HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
G +L +RGD +L+QI+ NL+ N+ KFTSEG IS++ +V ++ + +
Sbjct: 370 ----GGLLPGVPRWLRGDPTRLRQIIINLLGNAFKFTSEGFISLQVSVLQQ------LDN 419
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
+R ++ F V D+G GI ++F+
Sbjct: 420 DR---------------------------------VELHFAVQDSGIGIDMSSAGNLFDS 446
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT--AVCE 670
F Q + G GLGL I +S+ LM G+I + + E G RG F F V L +VC+
Sbjct: 447 FNQADASTTRKYGGTGLGLAICKSLAELMGGKIGV-ESEKG-RGSTFWFTVRLAQESVCD 504
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV ED+ + V +LGKL NG EA D + + ++ ++M
Sbjct: 667 RVLVAEDNPVNRMVIKGLLGKLSIVPVFAENGVEACDAA---------QQQKNRFNLVLM 717
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
DCEMP M+G+EATR IR E + + IPIIALTAHA+ + GM+++L+KP+
Sbjct: 718 DCEMPEMDGFEATRSIRDYERREGLTPIPIIALTAHALQEHREAVFACGMNYYLSKPITL 777
Query: 1083 DKL 1085
D L
Sbjct: 778 DTL 780
>gi|390950690|ref|YP_006414449.1| multi-sensor hybrid histidine kinase [Thiocystis violascens DSM
198]
gi|390427259|gb|AFL74324.1| multi-sensor hybrid histidine kinase [Thiocystis violascens DSM
198]
Length = 1162
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 140/291 (48%), Gaps = 52/291 (17%)
Query: 375 AALIKQMNATEQ-AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENL 433
A L++++ A + AE+ S K+ LA SH++R + +IIG+ +L E P D L
Sbjct: 559 ARLLEELRAAKAVAEQASQAKSIFLANMSHEIRTPMNSIIGMTDLLLE--QPLDDSQHKL 616
Query: 434 -GLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
+ + ++ L+GILN ++++SK+E+G+MEL +F+ QLL +VVDM +KG+ +
Sbjct: 617 LRSVSSAAQSLMGILNDILDVSKLESGRMELETIDFDPRQLLAQVVDMMAITAERKGLAI 676
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
L+ D ++ + H GD KL+QIL NL+ N++KFT G + + A +++
Sbjct: 677 QLE-IDPAIPRAVH--GDPTKLRQILVNLMGNAIKFTERGSVRLALAPSEQAG------- 726
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
++ F V DTG GIP IFE
Sbjct: 727 ------------------------------------EWLFSVKDTGIGIPAASLPRIFER 750
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
F Q ++ G GLG I + +V M G I + +E G FRF +
Sbjct: 751 FSQADQSTTRRYGGTGLGTAICKGIVDTMGGAIWVESEEAA--GSDFRFRL 799
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D + ++ + + + + ++ +G EA + +G +D I+M
Sbjct: 825 RVLVVDDIELNRELVTLRMRQRHHEIQIAVDGAEAIERYL--------QGG---FDLILM 873
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP MNG++A R IR E+ HIPII LTA + +DAG D + KP+
Sbjct: 874 DAHMPTMNGFDAIRAIRAHEQDRGTHIPIIMLTASVLDSDRKMCLDAGADGFVPKPIDFP 933
Query: 1084 KLLDVV 1089
L D +
Sbjct: 934 LLFDQI 939
>gi|325274521|ref|ZP_08140585.1| two-component sensor protein [Pseudomonas sp. TJI-51]
gi|324100338|gb|EGB98120.1| two-component sensor protein [Pseudomonas sp. TJI-51]
Length = 1212
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 138/295 (46%), Gaps = 48/295 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A +QA+ + K+ LA SH++R + A+IG++EL + A+ G L L +K
Sbjct: 701 QAKQQADNANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGWVDRSALALAHHSAK 760
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG--VDVVLDPCDG 499
DLLG++ ++++ +IE+G + L E +LA L+E V M+ +KG ++V+++P
Sbjct: 761 DLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVGRMFDGQARQKGLALEVIIEPA-- 818
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
CH D ++ KQ+L NLVSN++KFT G + +
Sbjct: 819 ---ARCHALLDPLRFKQVLSNLVSNAIKFTEHGQVRI----------------------- 852
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
C+S L P +L + EV D+G GI D +F F+Q
Sbjct: 853 CVS--------------LLDEAPGRPAML--DLEVRDSGIGIHPDDLERLFNPFIQANPH 896
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
+ G + G GLGL I +++ +M G + I E + G R + L V +P
Sbjct: 897 SQGARAGTGLGLAICRNLCDMMGGSLTIKSLE--DVGTQVRLKMPLQRVDAAAQP 949
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 954 KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEG 1013
+C + P G + LV++D L++ + LG LG + R+G+E
Sbjct: 954 ECLDVPDPGLRVLVIDDHPANLELMAQQLGYLGLQHASARDGREGL-----------AAW 1002
Query: 1014 KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQ-YDVHIPIIALTAHAMAGVASKIVDAGM 1072
+A +D +++DC MP MNG++ +R EE I+ TA+A V K + AGM
Sbjct: 1003 RAGDFDVLVLDCNMPHMNGYQLATAVRTEERHGQRPRCTILGYTANAQPEVRRKCLSAGM 1062
Query: 1073 DFHLTKPL 1080
D L KP+
Sbjct: 1063 DDCLLKPI 1070
>gi|118580477|ref|YP_901727.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
2379]
gi|118503187|gb|ABK99669.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
2379]
Length = 738
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 126/270 (46%), Gaps = 44/270 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A EQAE S K+ LA SH++R+ + I+G+ +L E + E L +IR+ S
Sbjct: 249 TAKEQAEAASRAKSEFLANMSHEIRSPMNGIMGMAQLM-EYTELTDEQREYLNVIRSSSH 307
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N+++++SKIEAGK+EL +F+L ++++V + KG+ + D
Sbjct: 308 GLLSLINNILDLSKIEAGKIELERSDFSLRASIDDIVKAHLSQIHDKGLTIR---TDIPA 364
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+ GD+++LKQIL NL+ N++KFT G I + AV
Sbjct: 365 AAPDTLIGDQLRLKQILLNLLGNAIKFTCRGGIGISVAVS-------------------- 404
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
ER ++ +V DTG GIP D IF+ F Q +
Sbjct: 405 --------------------ERRDERVRLRIDVTDTGIGIPTDAMERIFKPFTQADSSTT 444
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651
G GLGL I + LM G+I + +E
Sbjct: 445 RQYGGTGLGLSICSRLAELMDGKITVESRE 474
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L+V+D + L + +L + G R+G EA ++ + +D I+MD
Sbjct: 515 ILLVDDYEMNLLAVTRLLQRHGHTVVPARDGAEAV-----------QKWEQEAFDAILMD 563
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MPVM+G EATR IR+ E H P+IALT A+ +I+ G D H++KP+Q
Sbjct: 564 IQMPVMDGMEATRTIRRREAGTGRHTPVIALTGRALQEEQDEIMGQGFDGHISKPIQ 620
>gi|63095199|gb|AAY32330.1| AHK1 [Phyllostachys praecox]
Length = 409
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 157/333 (47%), Gaps = 54/333 (16%)
Query: 356 LGLFIILIAKAAKREMFLCAALIKQMNATE----------QAERKSMNKTFALAKASHDV 405
LG F+I + +CAA + +E QAE + K+ LA SH++
Sbjct: 88 LGTFVIWMLVG----YIICAAWSRYDKVSEDCRKMEELKTQAEAADVAKSQFLATVSHEI 143
Query: 406 RASLAAIIGLVELCHEDANPGTDLA----ENLGLIRTCSKDLLGILNSVMEMSKIEAGKM 461
R + ++G++++ GTDL ++ + C + L+ ++N V++ +KIEAGK+
Sbjct: 144 RTPMNGVLGMLDMLL-----GTDLTLTQKDHAQTAQMCGRALITLINDVLDRAKIEAGKL 198
Query: 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNL 521
EL F+L L+++V+ ++ +K +++ + CD V GD + +QIL NL
Sbjct: 199 ELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDV---PEVVIGDPWRFRQILTNL 255
Query: 522 VSNSMKFTSEGHISVRAAVKKKSFKQD-------------IIASNRNVISKCLS------ 562
V N++KFT GH+ VR + + S +D I S N LS
Sbjct: 256 VGNAVKFTERGHVFVRVCLAENSNVEDDQVLNGTLNGKDGKIESTANGALNTLSGFQAAD 315
Query: 563 --------KLFFRNKEG-FDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
KL +KE D+L+ S + + + + ++DTG GIP Q+ +F F
Sbjct: 316 ERNSWEYFKLLLSDKESLLDELEGEKSNQNDSDSVTLMISIEDTGVGIPLHAQDRVFTPF 375
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIA 646
+Q + + G G+GL I + + LM G+I+
Sbjct: 376 MQADSSTSRNYGGTGIGLSISKCLAELMGGQIS 408
>gi|147789780|emb|CAN76309.1| hypothetical protein VITISV_028333 [Vitis vinifera]
Length = 1400
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 165/336 (49%), Gaps = 31/336 (9%)
Query: 352 GVISLGLFIILIAKAAKREMFLCAALIKQMNATE-QAERKSMNKTFALAKASHDVRASLA 410
GV+ + L + I AA + +QM + +AE + K+ LA SH++R +
Sbjct: 665 GVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAEAADVAKSQFLATVSHEIRTPMN 724
Query: 411 AIIGLVELCHE---DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEE 467
++G++++ + DAN D AE KDL+ ++N V++ +KIE+G++EL
Sbjct: 725 GVLGMLKMLMDSGLDANQ-QDYAET---AHASGKDLISLINEVLDQAKIESGRLELEAVP 780
Query: 468 FNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMK 527
F+L L+ V+ ++ +KG+++ + D V GD + +QI+ NLV NS+K
Sbjct: 781 FDLRAALDNVLSLFSGKSHEKGIELAVYISDQV---PEFVIGDPGRFRQIITNLVGNSIK 837
Query: 528 FTSE-GHISVRA-----AVKKKSFKQDIIASNRNVISKCLSKLF-----------FRNKE 570
FT + GHI V V + +++ + N++ + + +++ E
Sbjct: 838 FTHDKGHIFVSVHLADEVVGPPDLRDEVLRQSLNIVHDSSNNSYNTLSGFPVVNRWKSWE 897
Query: 571 GFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLG 630
F L S+E ++++ V+DTG GIP + Q+ IF F+Q + G G+G
Sbjct: 898 KFKKLXCTDSMEET-SIIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGTGIG 956
Query: 631 LGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
L I + +V LM GEI + EPG G F F V T
Sbjct: 957 LSISKRLVDLMGGEIGF-ESEPGT-GSTFSFTVAFT 990
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 28/154 (18%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L K+ LVV+D+A+ +V L K GA +GK A L L+ +D
Sbjct: 1167 LREKRILVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAA-------LLMLKPPHN---FD 1216
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHIPIIALTAHAMA 1061
MD +MP M+G++AT+ IR+ E + + H PI+A+TA +
Sbjct: 1217 ACFMDLQMPEMDGFKATQEIRRMESKVNERIKSGEVSIEMFANVAYWHTPILAMTADVIQ 1276
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095
+ + GMD ++ KP ++D+L V E+
Sbjct: 1277 ANNEECMKCGMDGYVAKPFEEDQLYSAVAHFFES 1310
>gi|428317521|ref|YP_007115403.1| serine/threonine protein kinase and signal transduction histidine
kinase [Oscillatoria nigro-viridis PCC 7112]
gi|428241201|gb|AFZ06987.1| serine/threonine protein kinase and signal transduction histidine
kinase [Oscillatoria nigro-viridis PCC 7112]
Length = 2024
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 132/256 (51%), Gaps = 37/256 (14%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L I+G ++ D + + +I C + LL ++N V+++
Sbjct: 1552 KSQFLANMSHELRTPLNGILGYTQILKRDTGLTSQQNSGINIIHQCGEHLLTLINDVLDL 1611
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEAGKMEL EF+L+ L+ + ++ +KG+ ++ +P L +C V+ D +
Sbjct: 1612 SKIEAGKMELYLTEFHLSDFLQGITEICQIRAQQKGISLIYEPLIP--LPTC-VQADEKR 1668
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
L+QIL NL+ N++KFT +G +S FK D + + +
Sbjct: 1669 LRQILINLLGNAIKFTEKGGVS---------FKVDRLETQQ------------------- 1700
Query: 574 DLDALHSVERNPN--LLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631
+L S NP +F F+V+DTG GI D+ + IF F QV ++ EG GLGL
Sbjct: 1701 ---SLSSPIANPPSPTAKFIFQVEDTGIGIGPDELSKIFLPFEQVS-GSVSQIEGTGLGL 1756
Query: 632 GIVQSMVHLMKGEIAI 647
I + +V +M GE+ +
Sbjct: 1757 PISRQLVEMMGGELKV 1772
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 17/129 (13%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY-- 1018
N +K LVV+D V +L +G + +G++ + KAL +
Sbjct: 1811 NRRKILVVDDRWQNRSVLVNLLAPIGFELMEATDGQDCVN-------------KALLFQP 1857
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D I++D MPVM+G+EA R IRK DV IA +A ++G I AG + L K
Sbjct: 1858 DCIVIDLVMPVMDGFEAVRRIRKIPALKDV--IAIATSASILSGDPQSIFQAGCNAFLLK 1915
Query: 1079 PLQKDKLLD 1087
P++ +KLL+
Sbjct: 1916 PIRAEKLLE 1924
>gi|345893544|ref|ZP_08844340.1| hypothetical protein HMPREF1022_03000 [Desulfovibrio sp.
6_1_46AFAA]
gi|345046103|gb|EGW49997.1| hypothetical protein HMPREF1022_03000 [Desulfovibrio sp.
6_1_46AFAA]
Length = 953
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 149/321 (46%), Gaps = 47/321 (14%)
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
L +K +R L A + A EQAE S K+ LA+ SH++R + AI+G+ LC +
Sbjct: 268 LESKVEQRTSDLREAEKNALAAKEQAEEASRAKSDFLARMSHEIRTPMNAILGITYLCLQ 327
Query: 422 DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481
+ L L I + + LLGI+N ++++SKIEAGKM L E F L +L+E + D+
Sbjct: 328 TTHENKQLY-YLRKILSAGRGLLGIINDILDVSKIEAGKMTLQNEAFALQELVENLSDLC 386
Query: 482 YHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541
+ K ++V+ D +V V GD ++L Q+L NL+ N++KFT +G + +R
Sbjct: 387 GALVGGKNIEVLFH-VDPNVF--VTVEGDLLRLTQVLTNLLGNAVKFTEKGRVVLR---- 439
Query: 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGI 601
+ + R + + V DTG G+
Sbjct: 440 ------------------------------------IEELGRGADTITLGISVSDTGIGL 463
Query: 602 PKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
+++ +F+ F Q + G GLGL I Q V +M GE+ + EPG +G F F
Sbjct: 464 TEEELARLFKPFEQADGSITRRYGGTGLGLVICQRFVRMMGGELEV-RSEPG-KGSAFSF 521
Query: 662 NVLLTAVCERERPDT-DEEDP 681
++ L R D D DP
Sbjct: 522 SLTLPYRPVRHAWDNPDPPDP 542
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 14/139 (10%)
Query: 952 DGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRK 1011
DG S++ G + L+VED+ I +V S+++ ++G + NG A + CK
Sbjct: 685 DGALSQR--RGTRVLLVEDNEINQEVASSLMERMGMSVTLAENGLNAVN-ACK------- 734
Query: 1012 EGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASKIVDA 1070
A +D I MD +MPVM+G EA R +R +E PIIA+TAHAM K +A
Sbjct: 735 ---AKTFDIIFMDIQMPVMDGLEAARRLRAQEADDGAEPTPIIAMTAHAMREDREKSRNA 791
Query: 1071 GMDFHLTKPLQKDKLLDVV 1089
GMD H+TKP+ D L ++
Sbjct: 792 GMDDHITKPIDPDMLARIL 810
Score = 43.1 bits (100), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
P ++ LVV+D + VL G + + +G+EA D + +R PY
Sbjct: 542 PAGAERLLVVDDCEAARTILQEVLIHFGFRVDAVASGQEALDRL------VRAARTDTPY 595
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLT 1077
+++D +MP MNG E I K + IP ++ ++AH + K + L
Sbjct: 596 SLVLLDWKMPGMNGMEVADNIHKLPLE---SIPQLLMISAHGLEAYREKGENLHFAGFLV 652
Query: 1078 KPLQKDKLLDVV 1089
KP+ L + +
Sbjct: 653 KPVNPVTLWNTI 664
>gi|344339667|ref|ZP_08770595.1| multi-sensor hybrid histidine kinase [Thiocapsa marina 5811]
gi|343800403|gb|EGV18349.1| multi-sensor hybrid histidine kinase [Thiocapsa marina 5811]
Length = 1717
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 140/296 (47%), Gaps = 58/296 (19%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRTCS 440
EQAE S +K+ LA SH++R + A+IGL ++ GTDL + LG I S
Sbjct: 1180 EQAEAASRSKSEFLANMSHEIRTPMNAVIGLSQILL-----GTDLNDEQRDYLGKIHGSS 1234
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCD 498
+ LLGI+N +++ SKIEAGK++L F + +LL+++ ++ +KG+++V + P
Sbjct: 1235 RLLLGIINDILDYSKIEAGKLDLESRPFRMDELLDQMATLFGSAAGEKGLELVFRVSPDV 1294
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
L GD ++L Q+L NL++N++KFT +G + +R A Q
Sbjct: 1295 PRTL-----LGDALRLGQVLTNLLANALKFTEQGTVEIRIARLGGDTAQ----------- 1338
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
++ FEV DTG G+ ++ + +F+ F Q
Sbjct: 1339 -----------------------------VKLRFEVADTGIGMDTEQIDRLFQAFSQADS 1369
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
+ G GLGL I + +V M G + +A E G F F++LL E P
Sbjct: 1370 STTRKYGGTGLGLVISRKLVERMGGRLTVASAP--EAGSVFSFDLLLPVSREDSEP 1423
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 15/126 (11%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
G L+VED+A+ +V +L + GA + NG EA D +D
Sbjct: 1578 FTGAAILLVEDNALNQEVAKRMLQRTGAVVTLAENGIEAV--ALATTQD---------FD 1626
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MP+M+G+EATR IR + +PIIAL+A M + +AGM+ HL KP
Sbjct: 1627 LVLMDLQMPMMDGFEATRRIRPQRPD----LPIIALSAAVMEIDRNGAREAGMNGHLAKP 1682
Query: 1080 LQKDKL 1085
+ +L
Sbjct: 1683 IDTVEL 1688
Score = 39.7 bits (91), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+ + G + LVV+D A+ V +L + + EA + + + E P
Sbjct: 1427 RKIAGARVLVVDDHAVSRTVLREILQSWRCRVD------EAASGAAAVQAVIEAERAGRP 1480
Query: 1018 YDYIMMDCEMPV-MNGWEATR---LIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
+D+I+MD +MP ++G EATR +RKE P I ++ + + + +G+
Sbjct: 1481 FDFILMDWKMPGDLDGLEATRQLFRLRKEGRLTGAETPAIIVSGYNRDDLPKE--RSGLS 1538
Query: 1074 FHLTKPLQKDKLLDVV 1089
L KP+ LLD +
Sbjct: 1539 GFLGKPVTASALLDTL 1554
>gi|320158971|ref|YP_004191349.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio vulnificus
MO6-24/O]
gi|319934283|gb|ADV89146.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio vulnificus
MO6-24/O]
Length = 857
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 139/294 (47%), Gaps = 60/294 (20%)
Query: 379 KQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
KQ N A +AE+ + + LAK SH++R L I+G+ +L N +L + + ++
Sbjct: 468 KQSNLARREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKRSVNDAENLKQ-VDVLC 526
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-- 495
+ LL +LN +++ SKIE GK + + +FN L + ++Y + +KGV +
Sbjct: 527 NSGEHLLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKGVSFEIHNQ 586
Query: 496 -PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
P D C + D+V+L QI+ NL+SN++KFT G I V SFK + A +
Sbjct: 587 IPLD------CQLHTDQVRLNQIMFNLISNAVKFTPAGRIEV-------SFKLEQFARSE 633
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
HS+ +V DTG GI + K SIFE FV
Sbjct: 634 ------------------------HSI--------LSIQVSDTGIGIDESKLESIFEPFV 661
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE----------PGERGVC 658
Q + G GLGL IV+++V +++GEI++ + P E+G C
Sbjct: 662 QADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSELCKGSTFYLSIPVEKGEC 715
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 953 GKCSEK--PLN---------GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDH 1001
G+C E+ P N G K L+VED+ + A K E ++G +A +
Sbjct: 713 GECEERKTPTNPKPEQLFGQGLKVLLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEK 772
Query: 1002 VCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMA 1061
+ K +D I+MD ++P M G EATR IR E + PI A TA A
Sbjct: 773 L-----------KEHAFDLILMDNQLPKMGGIEATREIR---ETLKLGTPIYACTADAQE 818
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLD 1087
+ + AG + + KP+++ +L D
Sbjct: 819 STKQEFLSAGANRVIVKPIKEQELHD 844
>gi|451820687|ref|YP_007456888.1| putative sensor histidine kinase/response regulator hybrid
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451786666|gb|AGF57634.1| putative sensor histidine kinase/response regulator hybrid
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 949
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 145/303 (47%), Gaps = 54/303 (17%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA-ENLGLIR-- 437
+ A EQAE ++ K+ LA SH++R + I G +EL T+L+ E IR
Sbjct: 314 LKAKEQAEAANVAKSQFLANMSHEIRTPMNGIFGFLELLQ-----TTELSLEQEEFIREA 368
Query: 438 -TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
+ S+ LL I+N +++ SKIEA K+ + +FNL +E+ V + H ++KG+++ +
Sbjct: 369 KSASEILLYIINDILDFSKIEAKKLVMESIKFNLRTTIEDAVSLLSHKAVEKGLEIYVMI 428
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
DG V GD +++QIL NL+SN++KFT G ISV ++K
Sbjct: 429 KDGV---PEEVIGDPSRIRQILNNLISNAVKFTESGDISVSVDYEEKE------------ 473
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
+D+ L+ FEV DTG GI K+ + +F+ F Q
Sbjct: 474 ----------------NDMANLY------------FEVKDTGIGIRKEDIHKLFQSFNQA 505
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT 676
+ G GLGL I +V +M GE+ + + E G +G F+FNV L P
Sbjct: 506 DASTTRKYGGTGLGLAISSELVKMMDGEMNV-ESEFG-KGSTFKFNVNLKIAKRSSEPKF 563
Query: 677 DEE 679
D E
Sbjct: 564 DLE 566
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 16/144 (11%)
Query: 954 KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEG 1013
K S KP K L+VED+ I K+ +L ++ NG EA V +
Sbjct: 715 KHSLKP----KILLVEDNEINRKIVIGILKSREMTCDIAVNGSEAVKAVLE--------- 761
Query: 1014 KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
YD + MDC+MPVM+G+E+T IR E E H IIA+TA+AM G + K + AGMD
Sbjct: 762 --RDYDVVFMDCQMPVMDGYESTARIR-ELEGEKKHTTIIAMTANAMEGDSEKCIQAGMD 818
Query: 1074 FHLTKPLQKDKLLDVVKSIDETME 1097
++++KP+ + + +++S +T E
Sbjct: 819 YYISKPINFELMFSMIESNTKTRE 842
>gi|304407983|ref|ZP_07389633.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus
YK9]
gi|304343002|gb|EFM08846.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus
YK9]
Length = 1091
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 146/291 (50%), Gaps = 56/291 (19%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCH--EDANPGTDLAENLGL 435
+ ++ +QA++++ K+ LA+ SH++R L IIG+ +L E + D A
Sbjct: 427 MHEITELKQADQENRAKSRFLARVSHEIRTPLNGIIGMTQLMQHTELTDTQQDYAHK--- 483
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV---DV 492
I + S LLGI+ ++++SKIEAGK+ + + EF + +LL E+ VG+ KG+ +V
Sbjct: 484 ILSSSHLLLGIITDILDLSKIEAGKLNMEQLEFQIDELLYELTST---VGVLKGIKQIEV 540
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
+L+ G V GD ++LKQIL NL SN++KFT GH+ VR + +I
Sbjct: 541 ILESEAGL---PDKVIGDPLRLKQILMNLCSNAIKFTEHGHVLVRV--------ERVIEM 589
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
N +++ F V DTG G+ +D+ + ++E
Sbjct: 590 N--------------------------------GIVRLRFTVRDTGIGMTEDQIDMLYEP 617
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
F Q + + G GLGL IV+ +V L+ GE+ + + PG G CF F +
Sbjct: 618 FWQAEYASASKLAGTGLGLPIVKELVQLLGGELQV-ESSPG-IGSCFCFEL 666
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 18/145 (12%)
Query: 946 QVAAQSDG-----KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFD 1000
++A DG S + + L+VED+ I +V +L G V NG EA +
Sbjct: 821 EIAGVHDGGSEGLDMSHAATDRRSVLLVEDNMINQQVAIELLKMRGLDIHVASNGLEALE 880
Query: 1001 HVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAM 1060
+ K D I+MD MP+MNG+E ++ IR E+ +PIIALTA+AM
Sbjct: 881 LL-----------KHHAVDLILMDMYMPLMNGYETSKRIR--EDAAYAEVPIIALTANAM 927
Query: 1061 AGVASKIVDAGMDFHLTKPLQKDKL 1085
+ G++ L KPL+ ++L
Sbjct: 928 QQDHETYYEIGINEILLKPLEAERL 952
>gi|37676880|ref|NP_937276.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
gi|50400926|sp|Q7MD16.1|LUXQ_VIBVY RecName: Full=Autoinducer 2 sensor kinase/phosphatase LuxQ
gi|37201424|dbj|BAC97246.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
Length = 857
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 139/294 (47%), Gaps = 60/294 (20%)
Query: 379 KQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
KQ N A +AE+ + + LAK SH++R L I+G+ +L N +L + + ++
Sbjct: 468 KQSNLARREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKRSVNDAENLKQ-VDVLC 526
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-- 495
+ LL +LN +++ SKIE GK + + +FN L + ++Y + +KGV +
Sbjct: 527 NSGEHLLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKGVSFEIHNQ 586
Query: 496 -PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
P D C + D+V+L QI+ NL+SN++KFT G I V SFK + A +
Sbjct: 587 IPLD------CQLHTDQVRLNQIMFNLISNAVKFTPAGRIEV-------SFKLEQFARSE 633
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
HS+ +V DTG GI + K SIFE FV
Sbjct: 634 ------------------------HSI--------LSIQVSDTGIGIDESKLESIFEPFV 661
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE----------PGERGVC 658
Q + G GLGL IV+++V +++GEI++ + P E+G C
Sbjct: 662 QADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSELCKGSTFYLSIPVEKGEC 715
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 953 GKCSEK--PLN---------GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDH 1001
G+C E+ P N G K L+VED+ + A K E ++G +A +
Sbjct: 713 GECEEQKTPTNPKPEQLFGQGLKVLLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEK 772
Query: 1002 VCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMA 1061
+ K +D I+MD ++P M G EATR IR E + PI A TA A
Sbjct: 773 L-----------KEHAFDLILMDNQLPKMGGIEATREIR---ETLKLGTPIYACTADAQE 818
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLD 1087
+ + AG + + KP+++ +L D
Sbjct: 819 STKQEFLSAGANRVIVKPIKEQELHD 844
>gi|375012532|ref|YP_004989520.1| signal transduction histidine kinase [Owenweeksia hongkongensis DSM
17368]
gi|359348456|gb|AEV32875.1| signal transduction histidine kinase [Owenweeksia hongkongensis DSM
17368]
Length = 687
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 159/328 (48%), Gaps = 52/328 (15%)
Query: 341 SLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNAT-----EQAERKSMNKT 395
+L ++ + IA ++ + LF++L + KR + +K++N+ +AE SM K+
Sbjct: 266 NLGFILGLIIALMMGITLFLLLQSSREKRRVSHINRELKKLNSALSKEKHRAEEASMAKS 325
Query: 396 FALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSK 455
L+ SH++R L AI+G +++ + + + L ++ SK+LL ++N V+E+ +
Sbjct: 326 EFLSNMSHEIRTPLNAILGFIDILNRKKLEDESM-KYLRMMTFSSKNLLALVNDVLEIDR 384
Query: 456 IEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLK 515
IE+GK+EL+ +FN + + ++D+Y +KG+++ LD V GD +K
Sbjct: 385 IESGKVELLARDFNPLEEVRLLLDLYEQSFEEKGLNLTLDT---EVKQGKVALGDSLKFN 441
Query: 516 QILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDL 575
Q+L NL+ NS KFT G + K + ++++ N NV
Sbjct: 442 QVLTNLLRNSFKFTQLGGV-------KLEYTEEVVGENLNV------------------- 475
Query: 576 DALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQ 635
+ ++DTG GIP + IF+ F QV+ EG GLGL I +
Sbjct: 476 ---------------KIVLEDTGIGIPAANLDKIFDRFSQVETGYTRKYEGTGLGLAITK 520
Query: 636 SMVHLMKGEIAIA--DKEPGERGVCFRF 661
++ M G I+++ + + E V F F
Sbjct: 521 KLIDAMGGSISVSSIENQGTEFSVTFVF 548
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 15/128 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
GK+ L+ ED+ + + V S +L + G +V +G EA + E K+ YD I
Sbjct: 570 GKEILIAEDNPMNVLVLSKLLEQFGIMADVASDGLEALQKL---------ETKS--YDLI 618
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD MP M+G EATR IR + +++PI+AL+A+ + +GM ++TKP
Sbjct: 619 FMDLHMPEMDGLEATRKIRGK----GLNLPIVALSANITKKSREESKSSGMQDYITKPFT 674
Query: 1082 KDKLLDVV 1089
++ +L ++
Sbjct: 675 REVILRIL 682
>gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
Length = 1410
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 131/256 (51%), Gaps = 30/256 (11%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R + A+IG+ L D + + + IR+ S LL ++N +++
Sbjct: 675 KSEFLATMSHEIRTPMNAVIGMTGLLL-DTRLTSTQQDYVETIRSSSDALLSLINDILDF 733
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDGSVLGSCHVRGDR 511
SKIE+GK+EL + F+L +EE +D+ + K +++ ++DP S V GD
Sbjct: 734 SKIESGKLELEQHPFDLRTCIEESLDLLATKAVSKNIELAYLIDPITPS-----KVIGDG 788
Query: 512 VKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEG 571
+L+QIL NL+SN++KFT G + + K+ + I S N+
Sbjct: 789 ARLRQILVNLLSNAVKFTETGEV----VISLKAVSLEPIVSEENL--------------- 829
Query: 572 FDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631
D ++ + + PN Q +F V DTG GIP + N +F+ F QV + G GLGL
Sbjct: 830 --DENSTETTTQ-PNRYQIQFAVRDTGIGIPPARMNRLFKSFSQVDSSTSRQYGGTGLGL 886
Query: 632 GIVQSMVHLMKGEIAI 647
I + + +M G++ +
Sbjct: 887 VISKRLAEMMGGQMWV 902
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 16/162 (9%)
Query: 933 AGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVC 992
G S+ H + +V D K L + L+ ED + KV +L ++G + +V
Sbjct: 1098 GGESLEVHLADKDRVKLTKDIPLLAKTL-PLRILLAEDHLVNQKVALQILQRMGYRADVA 1156
Query: 993 RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK---EEEQYDVH 1049
NG E +L LR++ YD I+MD +MP M+G EA R I+K + EQ
Sbjct: 1157 GNGLE-------VLEALRRQT----YDVILMDMQMPEMDGLEAARQIKKLYGDREQDMSE 1205
Query: 1050 IP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
P IIA+TA+AM + + AGMD +++KP++ ++L+ V+K
Sbjct: 1206 RPRIIAVTANAMESDRNDCIAAGMDDYISKPIRMEQLVSVLK 1247
>gi|407783399|ref|ZP_11130600.1| Signal transduction histidine kinase [Oceanibaculum indicum P24]
gi|407202124|gb|EKE72119.1| Signal transduction histidine kinase [Oceanibaculum indicum P24]
Length = 1016
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 147/302 (48%), Gaps = 45/302 (14%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENL-GLIRTCSK 441
A QAE + K+ LA SH++R + ++ + EL D P TD + +IR S
Sbjct: 346 ARRQAEAATEAKSNFLASMSHEIRTPMNGVMSMAELL--DQTPLTDEQRGMSAIIRQSSA 403
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LLGI+N +++ SKIEAGK+++ +L++++E+V D+ +KG+ +++D D +
Sbjct: 404 ALLGIINDILDFSKIEAGKLDIEMLTIDLSEIVEDVGDLLALRAEEKGLHLIVD-IDPRL 462
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
G ++GD +L+QIL NL N++KFT EGH+++R ++ + K A+
Sbjct: 463 PG--RLQGDPTRLRQILLNLGGNAVKFTEEGHVTLRVSLPDTA-KPAAGAT--------- 510
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
L EV D+G G+ ++Q +F+ F+Q +
Sbjct: 511 --------------------------LPVRLEVIDSGIGLTPEQQGRLFQPFMQADSSTA 544
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE-RPDTDEED 680
G GLGL I + +M G I + D E G +G F + + + E RP+ D D
Sbjct: 545 RKFGGTGLGLSISHRLTEMMGGRIGV-DSEAG-KGSTFWVELPMAVMDEAGIRPEADIAD 602
Query: 681 PR 682
R
Sbjct: 603 AR 604
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LV ED+ V L +LG EV NG+ A D R E + Y ++ D
Sbjct: 756 ILVAEDNPTNQIVIGRHLTRLGYAHEVAANGRLALD---------RLEAET-GYGLLLTD 805
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
MP M+G+E T IR +EE +PI+ALTA A+AG + +AGMD +LTKP+
Sbjct: 806 FHMPEMDGFELTAAIRAQEEPDTARLPIVALTADALAGTEQQCFEAGMDGYLTKPINSAA 865
Query: 1085 LLDVVKSI 1092
L V++ +
Sbjct: 866 LARVLEEM 873
>gi|303327881|ref|ZP_07358321.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
3_1_syn3]
gi|302862242|gb|EFL85176.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
3_1_syn3]
Length = 976
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 149/321 (46%), Gaps = 47/321 (14%)
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
L +K +R L A + A EQAE S K+ LA+ SH++R + AI+G+ LC +
Sbjct: 291 LESKVEQRTSDLREAEKNALAAKEQAEEASRAKSDFLARMSHEIRTPMNAILGITYLCLQ 350
Query: 422 DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481
+ L L I + + LLGI+N ++++SKIEAGKM L E F L +L+E + D+
Sbjct: 351 TTHENKQLY-YLRKILSAGRGLLGIINDILDVSKIEAGKMTLQNEAFALQELVENLSDLC 409
Query: 482 YHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541
+ K ++V+ D +V V GD ++L Q+L NL+ N++KFT +G + +R
Sbjct: 410 GALVGGKNIEVLFH-VDPNVF--VTVEGDLLRLTQVLTNLLGNAVKFTEKGRVVLR---- 462
Query: 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGI 601
+ + R + + V DTG G+
Sbjct: 463 ------------------------------------IEELGRGADTITLGISVSDTGIGL 486
Query: 602 PKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
+++ +F+ F Q + G GLGL I Q V +M GE+ + EPG +G F F
Sbjct: 487 TEEELARLFKPFEQADGSITRRYGGTGLGLVICQRFVRMMGGELEV-RSEPG-KGSAFSF 544
Query: 662 NVLLTAVCERERPDT-DEEDP 681
++ L R D D DP
Sbjct: 545 SLTLPYRPVRHAWDNPDPPDP 565
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 14/139 (10%)
Query: 952 DGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRK 1011
DG S++ G + L+VED+ I +V S+++ ++G + NG A + CK
Sbjct: 708 DGALSQR--RGTRVLLVEDNEINQEVASSLMERMGMSVTLAENGLNAVN-ACK------- 757
Query: 1012 EGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASKIVDA 1070
A +D I MD +MPVM+G EA R +R +E PIIA+TAHAM K +A
Sbjct: 758 ---AKTFDIIFMDIQMPVMDGLEAARRLRAQEADDGAEPTPIIAMTAHAMREDREKSRNA 814
Query: 1071 GMDFHLTKPLQKDKLLDVV 1089
GMD H+TKP+ D L ++
Sbjct: 815 GMDDHITKPIDPDMLARIL 833
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
P ++ LVV+D + VL G + + +G+EA D + +R PY
Sbjct: 565 PAGAERLLVVDDCEAARTILQEVLIHFGFRVDAVASGQEALDRL------VRAARTDTPY 618
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLT 1077
+++D +MP MNG E I K + IP ++ ++AH + K + L
Sbjct: 619 SLVLLDWKMPGMNGMEVADNIHKLPLE---SIPQLLMISAHGLEAYREKGENLHFAGFLV 675
Query: 1078 KPLQKDKLLDVV 1089
KP+ L + +
Sbjct: 676 KPVNPVTLWNTI 687
>gi|254446715|ref|ZP_05060190.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198256140|gb|EDY80449.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 778
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 148/303 (48%), Gaps = 51/303 (16%)
Query: 370 EMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL 429
EM + A I+ A E+A+ + K+ L+ SH++R + AI+G+ L D + +
Sbjct: 251 EMEVAARTIELRTAMEKAQSANKAKSEFLSTMSHELRTPMNAIVGMSSLLM-DKDLDDER 309
Query: 430 AENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG 489
+ +IR+ S LL ++N V++ SKIE+G ++L ++ FNL LEE +D+
Sbjct: 310 QSYIKIIRSSSDALLSLINDVLDYSKIESGHLDLEDQPFNLVNCLEEAMDIVAAPRRDAP 369
Query: 490 VD--VVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+D V +DP ++ V+GD +L+Q+L NL+ N++KFT +GH+ + A K
Sbjct: 370 IDFIVTIDPKLPAI-----VKGDVTRLRQVLINLLGNAVKFTQKGHVWLEA-------KC 417
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
++ + NV + A+H DTG GIP D+++
Sbjct: 418 CVVGESENVFASI----------------AIH----------------DTGIGIPDDRKH 445
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
+F+ F QV + G GLGL I Q + M G I + + E G G F+F + L
Sbjct: 446 RLFQTFSQVDSSMTRRFGGTGLGLAISQRLAMAMGGIIEV-ESEVGS-GSTFQFTIPLN- 502
Query: 668 VCE 670
CE
Sbjct: 503 -CE 504
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 26/159 (16%)
Query: 940 HCSSLQQVAAQSDGKCSEKPLNGKKF------------LVVEDDAIVLKVTSAVLGKLGA 987
H S L+++ Q G K + KF L+ ED+ + KV ++ + G
Sbjct: 615 HISDLRKLVHQVLGTAKPKTKSDNKFDKPAPVIENLNILLAEDNKLNQKVFKLIMKREGY 674
Query: 988 KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYD 1047
K ++ +G EA + K YD I MD +MPVM+G EATR IR ++
Sbjct: 675 KIDIVDDGAEALAAILK-----------QRYDLIFMDLQMPVMDGLEATRSIRSSGDK-- 721
Query: 1048 VHIP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+ P II TA+ + A I AGM+ +L KP++ + +
Sbjct: 722 ISQPWIIGFTANVESDAAPAIRAAGMNDYLPKPVKDENI 760
>gi|300867481|ref|ZP_07112132.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300334475|emb|CBN57300.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 1174
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 137/278 (49%), Gaps = 49/278 (17%)
Query: 378 IKQMNATEQAERKS--------MNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL 429
I + EQA RK+ + K+ L+ SH++R L AI+G ++ D++ +
Sbjct: 674 IAERKLAEQALRKAVIAADAANLAKSEFLSSMSHELRTPLNAILGFSQVMVRDSSLKNEH 733
Query: 430 AENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG 489
++L +I + LL ++N ++EMSKIEAGK +L E FNL +LL + +++ K
Sbjct: 734 QQHLQIINRAGEHLLSLINDILEMSKIEAGKSQLNEASFNLIRLLGTLEEIFRLKAESKK 793
Query: 490 VDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDI 549
+ ++ D S V+GD KL+Q+L NLV N++KFT G +++R +K
Sbjct: 794 LQLIFDL---SKEVPQFVKGDEGKLRQVLINLVGNAIKFTETGSVTLRVKLK-------- 842
Query: 550 IASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSI 609
+ N IS L +FE++DTG GI ++ N +
Sbjct: 843 ---SENEISSL--------------------------ALPLQFEIEDTGPGIAAEEMNKL 873
Query: 610 FEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
F F Q K T Q+G GLGL I + V +M G+I++
Sbjct: 874 FAPFEQTK-TGQKSQQGTGLGLPISRKFVQMMGGDISV 910
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D A V +L LG RNG+EA I +D + P+ I M
Sbjct: 954 RILVVDDRADNCLVIDRLLSPLGLLVREARNGEEAI----AIWADWQ------PH-LIWM 1002
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MPVMNG+E T+ I+ I+ALTA A I+ AG D + KP Q D
Sbjct: 1003 DMQMPVMNGYETTKKIKAHP--LGKQTIIVALTASAFEEERKTILAAGCDDFMRKPFQVD 1060
Query: 1084 KLL 1086
L
Sbjct: 1061 ILF 1063
>gi|197104629|ref|YP_002130006.1| sensor histidine kinase/response regulator [Phenylobacterium
zucineum HLK1]
gi|196478049|gb|ACG77577.1| sensor histidine kinase/response regulator [Phenylobacterium
zucineum HLK1]
Length = 802
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 132/286 (46%), Gaps = 55/286 (19%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVE-LCHEDANPGTDLAENLGLIRTC 439
+ A E+AE + K+ LA SH++R L ++G+ + + ++ +P E L +IR
Sbjct: 412 VRAKEEAEAANRAKSAFLATMSHEIRTPLNGVLGMAQAMAMDELSPAQR--ERLDVIRQS 469
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
+ LL ILN V+++SKIEAGK++L E EF++ +L+ V + V KG+ +
Sbjct: 470 GESLLAILNDVLDLSKIEAGKLDLEEAEFDVEELVRTVHATFAAVAEAKGLGFEIAVARN 529
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
+ RGD ++++QIL NLVSN +KFT G + VR
Sbjct: 530 A---RGLYRGDPIRVRQILWNLVSNGLKFTDRGAVEVR---------------------- 564
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
V R LL FEV DTG GI ++ ++F +F Q +
Sbjct: 565 ---------------------VRRAQGLLA--FEVRDTGIGIAPEQLANLFRKFEQADAS 601
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + + LM GEIA RG RF V L
Sbjct: 602 TTRRFGGTGLGLAICRELAGLMGGEIAAESA----RGQGARFTVSL 643
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 26/171 (15%)
Query: 922 PLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAV 981
PL K++ ++ + + ++ A+ D +PL + L ED+A+ V +
Sbjct: 644 PLEKVRR------RAVKAKRAPAERTPAEPD-----RPL---RILAAEDNAMNQLVLKTL 689
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
L ++G + +G+EA ++G +D I+MD +MPVM+G AT +IR
Sbjct: 690 LAQVGVDPVIVPDGREAVAAW--------EQGD---WDVILMDVQMPVMDGPTATAMIRT 738
Query: 1042 EEEQYD-VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKS 1091
E PI+ALTA+AMA ++ +D GMD ++ KP++ +L + +++
Sbjct: 739 RELSLGRPRTPIVALTANAMAHQVAEYLDVGMDGYVAKPIEAARLYEALQA 789
>gi|183220127|ref|YP_001838123.1| putative two-component sensor protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189910247|ref|YP_001961802.1| two component response regulator sensor histidine kinase/response
regulator subunits [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167774923|gb|ABZ93224.1| Sensor histidine kinase and response regulator of a two component
complex [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167778549|gb|ABZ96847.1| Putative two-component sensor protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 1164
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 138/300 (46%), Gaps = 59/300 (19%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAE----NLGLIRT 438
A E+AE S+ K+ LA SH++R L +IG +L TDL + + +
Sbjct: 645 AREKAENASIAKSNFLANMSHEIRTPLNGVIGFADLLMR-----TDLNQVQRKYMETVHL 699
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
+ LL ++N +++ SKIE+GKMEL +E N+ LL ++ ++ H +KG++++L+
Sbjct: 700 SALSLLDLINDILDFSKIESGKMELYKERVNIFDLLHQIAEIVKHKAYEKGLELILN-IS 758
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
V + V D ++L+QIL NL+ N++KFT +G I ++
Sbjct: 759 PKVPRNVFV--DSLRLRQILLNLIGNALKFTLKGEIQIK--------------------- 795
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
L + N N +F FEV DTG GI K+ QN IFE F Q
Sbjct: 796 -------------------LTATPVNQNEFEFLFEVIDTGIGINKENQNKIFEVFAQADS 836
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER---PD 675
+ G GLGL I ++ L +I + E RF T + + ER PD
Sbjct: 837 STTRQFGGTGLGLSISSKLLQLFDSKIELE----SELNHGSRFYFKFTTIADNERNKEPD 892
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 69/119 (57%), Gaps = 15/119 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKL--GAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
K ++VED+ + + +T ++ K+ A NG EA +H K DL I
Sbjct: 1043 KVMIVEDNPVNMMLTKTIVSKILQSAIIIEATNGLEAVEHFKKTEPDL-----------I 1091
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+MD +MP MNG++ATR IRK ++V PIIALTA ++ ++ +++GM+ +++KP+
Sbjct: 1092 LMDIQMPEMNGYDATREIRKLNIGHNV--PIIALTAGTLSDEENRCLESGMNDYISKPV 1148
>gi|27367166|ref|NP_762693.1| autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio vulnificus
CMCP6]
gi|50401046|sp|Q8D5Z6.1|LUXQ_VIBVU RecName: Full=Autoinducer 2 sensor kinase/phosphatase LuxQ
gi|27358734|gb|AAO07683.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio vulnificus
CMCP6]
Length = 857
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 139/294 (47%), Gaps = 60/294 (20%)
Query: 379 KQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
KQ N A +AE+ + + LAK SH++R L I+G+ +L N +L + + ++
Sbjct: 468 KQSNLARREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKRSVNDAENLKQ-VDVLC 526
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-- 495
+ LL +LN +++ SKIE GK + + +FN L + ++Y + +KGV +
Sbjct: 527 NSGEHLLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKGVSFEIHNQ 586
Query: 496 -PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
P D C + D+V+L QI+ NL+SN++KFT G I V SFK + A +
Sbjct: 587 IPLD------CQLHTDQVRLNQIMFNLISNAVKFTPAGRIEV-------SFKLEKFARSE 633
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
HS+ +V DTG GI + K SIFE FV
Sbjct: 634 ------------------------HSI--------LSIQVSDTGIGIDESKLESIFEPFV 661
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE----------PGERGVC 658
Q + G GLGL IV+++V +++GEI++ + P E+G C
Sbjct: 662 QADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSELCKGSTFYLSIPVEKGEC 715
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 953 GKCSEK--PLN---------GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDH 1001
G+C E+ P N G K L+VED+ + A K E ++G +A +
Sbjct: 713 GECEEQKTPTNPKPEQLFGQGLKVLLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEK 772
Query: 1002 VCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMA 1061
+ K +D I+MD ++P M G EATR IR E + PI A TA A
Sbjct: 773 L-----------KEHAFDLILMDNQLPKMGGIEATREIR---ETLKLGTPIYACTADAQE 818
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLD 1087
+ + AG + + KP+++ +L D
Sbjct: 819 STKQEFLSAGANRVIVKPIKEQELHD 844
>gi|398804151|ref|ZP_10563151.1| signal transduction histidine kinase [Polaromonas sp. CF318]
gi|398094686|gb|EJL85044.1| signal transduction histidine kinase [Polaromonas sp. CF318]
Length = 1137
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 126/264 (47%), Gaps = 44/264 (16%)
Query: 402 SHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKM 461
SH++R L ++G+ L D + + L +R S LLG++N V++ SKIE+GK+
Sbjct: 484 SHEIRTPLNGVVGMTTLL-ADTPLDPEQRDYLHTMRVSSDQLLGVINDVLDFSKIESGKL 542
Query: 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNL 521
+L E NL +EE D+ +KG+++++D D VRGD +L+Q+L N
Sbjct: 543 DLENEPLNLLATIEEACDIGAPRAREKGLELLVDMGDEL---PTWVRGDVTRLRQVLLNF 599
Query: 522 VSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSV 581
V+N++KFT G + V A V + + + + G
Sbjct: 600 VNNAVKFTERGQVIVSAHVLEDATPE---------------------RGGL--------- 629
Query: 582 ERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLM 641
EF V D+G GIP D+Q+++F+ F QV + G GLGL I + + LM
Sbjct: 630 --------IEFRVKDSGIGIPLDRQSALFQSFTQVDTSTTRKYGGTGLGLAICKRLAGLM 681
Query: 642 KGEIAIADKEPGERGVCFRFNVLL 665
G + + + PG+ G F F L
Sbjct: 682 GGGVGL-ESAPGQ-GSTFWFTARL 703
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 958 KPLNGKKFLVVEDD-AIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA- 1015
KP + +F++V DD A+ LKV A+L KLG + NG+EA D V + LR EG
Sbjct: 852 KPESRNQFILVADDNAVNLKVALAMLAKLGYEAATALNGREAADRVA---ASLRPEGGVS 908
Query: 1016 -----LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDA 1070
PY ++MD MPVM+G+ A+R I PIIALTA + + + A
Sbjct: 909 SRDGPRPYAAVLMDANMPVMDGFAASREIIAAHGA--AAPPIIALTASVLEEDRQRCLAA 966
Query: 1071 GMDFHLTKPLQKDKL 1085
GM L KPL+ D+L
Sbjct: 967 GMVGFLPKPLRIDEL 981
Score = 43.1 bits (100), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 19/134 (14%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK+ LVV+D + L++ L + G + + EA D LR + P D
Sbjct: 722 LAGKRALVVDDTPVNLRILDKQLRRWGMEPALFERASEALDW-------LRSQP---PVD 771
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAM-AGVASKIVDAGMDFHLTK 1078
++ D MP M+G + +R E D I+ LT+ M G +++ DA L K
Sbjct: 772 VVVTDMHMPEMDGQTFAQTLR--ERHPDTR--IVLLTSGTMPTGEQARVFDA----RLLK 823
Query: 1079 PLQKDKLLDVVKSI 1092
P ++ +L + + +
Sbjct: 824 PYRQSQLFEAIARV 837
>gi|372271669|ref|ZP_09507717.1| PAS sensor protein [Marinobacterium stanieri S30]
Length = 2110
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 127/277 (45%), Gaps = 45/277 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+AE S K+ LA SH++R + I+G+ +L P E + I +
Sbjct: 1612 AREKAEAASEAKSLFLASMSHEIRTPMNGILGMAQLLMRTELPAAQ-QEQVQAIYRSGQS 1670
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ILN V++ +KIEAG+MEL F L + LE++ + + +K +D++L CD S+
Sbjct: 1671 LLSILNDVLDFTKIEAGQMELEATPFKLNEQLEQLRQLLSPMAQEKHLDLILR-CDDSLP 1729
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
S V GD L Q+L NL +N++KFT EG++ ++A ++ D
Sbjct: 1730 ES--VLGDARALNQVLLNLCTNALKFTHEGYVLIKA----RALSCD-------------- 1769
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
P + FEV+DTG GIP IF F Q +
Sbjct: 1770 ---------------------KPEQHRIRFEVEDTGIGIPASAHERIFTHFSQADSSITR 1808
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
G GLGL I + +V L +G+I E RG F
Sbjct: 1809 RFGGTGLGLSICKRLVDLQQGKIGFDSAEG--RGTSF 1843
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 19/125 (15%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAF----DHVCKILSDLRKEGKALPYDY 1020
L+VED I +VT +L G + V +G A DH YD
Sbjct: 1873 ILLVEDTPINQQVTVGLLESEGHRVSVADDGYTALSMHNDHA---------------YDL 1917
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
++MD +P M+G E R +R+ + IIALTA + +AGMD + KPL
Sbjct: 1918 VLMDIHLPDMDGIETARRMREHSNPQRAGVRIIALTASVTPAEVRRYEEAGMDAVVGKPL 1977
Query: 1081 QKDKL 1085
Q +L
Sbjct: 1978 QFGEL 1982
>gi|392378909|ref|YP_004986068.1| two-component hybrid sensor and regulator [Azospirillum brasilense
Sp245]
gi|356881276|emb|CCD02261.1| two-component hybrid sensor and regulator [Azospirillum brasilense
Sp245]
Length = 1264
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 134/267 (50%), Gaps = 44/267 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++AE + K+ LA SH++R + +IG+ +L E G L + +R+ +
Sbjct: 594 ARDEAEAATHAKSDFLAAMSHEIRTPMNGVIGMTDLLLETGLIGEQL-QFAQAVRSSANA 652
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD--VVLDPCDGS 500
LL I+N +++MSK+EAG++EL FN A LLE VV++ + +KG+D ++L P
Sbjct: 653 LLTIINDILDMSKLEAGRVELETLPFNPADLLEGVVELLWPKAHEKGIDLGILLSPE--- 709
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
V GD +L+QIL NLV N++K+T G++ + ++ ++
Sbjct: 710 --ARHTVLGDATRLRQILVNLVGNAVKYTETGNVVIETGIQTQT---------------- 751
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+G + + +H++ F+V DTG GIP + + +F F QV T
Sbjct: 752 ---------DG--NSETIHTLR---------FDVIDTGIGIPSEAISRLFSRFEQVDRTI 791
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAI 647
G GLGL I + + LM+G I +
Sbjct: 792 ARRYGGTGLGLAICKQLTELMQGRITV 818
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 12/136 (8%)
Query: 954 KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEG 1013
+ + P L+ ED+A + + +L + G ++ +G +A + + LR
Sbjct: 994 EINRPPARSAHILIAEDNATNQLIAATLLRRAGFTVDIVDDGVQALEAMS-----LR--- 1045
Query: 1014 KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
PYD ++MD +MP + G+EAT IR +P+IALTA AM + + AGM+
Sbjct: 1046 ---PYDLVLMDVQMPNLTGFEATEHIRALRGPR-ATVPVIALTADAMIETRERCLRAGMN 1101
Query: 1074 FHLTKPLQKDKLLDVV 1089
+TKP ++ LL V+
Sbjct: 1102 DVVTKPFERSALLGVI 1117
>gi|315646523|ref|ZP_07899641.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
vortex V453]
gi|315278166|gb|EFU41486.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
vortex V453]
Length = 1001
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 132/288 (45%), Gaps = 55/288 (19%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCH-----EDANPGTDLAENLGL 435
+ A E AER KT L SH++R + IIG++EL ED TD+
Sbjct: 753 IRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLKTTELDEDQRNYTDI------ 806
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
+ S LL ILN +++ SKIE G M L E ++ LLE +VD++ +KG +L
Sbjct: 807 LMESSGSLLHILNEILDFSKIETGNMTLNSEPIDVQALLESIVDLFSAKAKEKG---LLL 863
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
C + + GD ++L+Q+L NL+SN++KFT+EG IS+
Sbjct: 864 SCSINTTVPDVIIGDGLRLRQVLVNLISNAIKFTNEGSISM------------------- 904
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
++ LH F+V DTG GIP ++Q+ +F F Q
Sbjct: 905 ------------------SVEGLHRT--GTQEFTLAFQVKDTGIGIPAEQQHQLFMSFSQ 944
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ + G GLGL I + +V LM G I + +E + G F F +
Sbjct: 945 LHPSLNRKYGGTGLGLAISKKLVELMGGVIGVESRE--QLGSSFYFTI 990
>gi|428773834|ref|YP_007165622.1| histidine kinase [Cyanobacterium stanieri PCC 7202]
gi|428688113|gb|AFZ47973.1| histidine kinase [Cyanobacterium stanieri PCC 7202]
Length = 697
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 146/292 (50%), Gaps = 40/292 (13%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP-GTDLAENLGLIRTCSK 441
A ++AE+ + K+ LA SH++R L + G++ L + P ++ + + I SK
Sbjct: 270 ARKEAEQANNAKSQFLAMMSHEIRTPLNGLFGILNLLK--STPLNSEQKDFIQTIEDSSK 327
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL I+N +++ SKIE+GK+ELV E+FNL + ++ V+D+ +G+D+ L D
Sbjct: 328 SLLLIINDILDFSKIESGKLELVIEDFNLQKCIKNVIDLLSFQAKSQGLDLKL-FWDSDT 386
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
++RGD +L+Q+L NL+SN++KFT EG ++V +
Sbjct: 387 --PINLRGDVGRLRQVLINLISNALKFTEEGEVTVTVSS--------------------- 423
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
R +G D ++E N + L F V DTG GI K+ Q+ +F FVQ
Sbjct: 424 -----RRLQGVLD----GTLEGNKDYL-IHFAVKDTGIGIAKENQDKLFNPFVQADGAIN 473
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL-TAVCERE 672
G GLGL I + + LM G+I K G F F V + +A CE +
Sbjct: 474 RRYGGTGLGLVISRRLARLMGGDIWF--KSELGVGSTFYFTVKVDSAPCETD 523
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
N K L+ ED+ + KV +L KLG + NG E D V K YD
Sbjct: 571 NSLKILIAEDNPVNQKVALLLLKKLGYYPHIAINGLEVLDAVKKDC-----------YDV 619
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MD +MP M+G AT IR + + IIA+TA+A + +AGMD +++KP
Sbjct: 620 ILMDMQMPEMDGLSATEWIRINVDS-TMQPYIIAMTANATKADEKRCFEAGMDDYISKPF 678
Query: 1081 Q 1081
+
Sbjct: 679 E 679
>gi|428213852|ref|YP_007086996.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002233|gb|AFY83076.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1828
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 130/279 (46%), Gaps = 32/279 (11%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L AI+G ++ DA+ + E+L +I LL ++N V+EM
Sbjct: 1349 KSEFLANMSHELRTPLNAILGFTQVMARDASLKPENHEHLKIINRAGGHLLALINDVLEM 1408
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEAG+M F+L LL+ + +M+ K + ++ + D V+ D K
Sbjct: 1409 SKIEAGRMSFNSVNFDLLNLLKSLNEMFQIKAESKQLQIIFEGWDEL---PQFVKTDESK 1465
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
L+Q+L N+V N++KFT GH+ +R V G +
Sbjct: 1466 LRQVLINIVGNAIKFTETGHVILRIEVTDAP-------------------------TGVN 1500
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
S NP + FE++DTG GI ++ +FE F Q ET Q+G GLGL I
Sbjct: 1501 PDPGDFSDSGNPGKFLY-FEIEDTGPGIAPEEMGKLFEPFGQT-ETGRKSQQGTGLGLPI 1558
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
+ V LM G+I + +G F F V + E E
Sbjct: 1559 SRKFVQLMGGDIQVTSIVG--QGTVFAFAVAIAPSSEGE 1595
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
N + LVV+D + +L LG + + NG+ A L
Sbjct: 1615 NESRILVVDDAFESRLLLKTILKSLGFQVQEAENGQGAIAVYQSWKPHL----------- 1663
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MD +MPVM+G+EATR I+ + I+ALTA A I+DAG D + KP
Sbjct: 1664 ILMDMQMPVMDGYEATRHIKSTAQGQKT--TIVALTASAFEEERKMILDAGCDDFIRKPF 1721
Query: 1081 QKDKLLDVV 1089
++ LL+ +
Sbjct: 1722 LEELLLETI 1730
>gi|281418385|ref|ZP_06249405.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
JW20]
gi|281409787|gb|EFB40045.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
JW20]
Length = 932
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 152/306 (49%), Gaps = 57/306 (18%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA-NPGT-DLAENLGLIRTCS 440
A ++A++ + K+ LA SH++R + +IIG L +P + EN+GL +
Sbjct: 328 ARDEADKANRAKSEFLASMSHEIRTPINSIIGYQYLLKNSVLSPKQREYVENIGL---AA 384
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K+LL I+N +++ SKIEAG+M L E +FN+ +L E++ + +KG+++ + D
Sbjct: 385 KNLLAIINQILDFSKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRI-KVDED 443
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
V ++GD +LKQ++ NLVSN +KFT EG+IS+R +
Sbjct: 444 V--PRFLKGDITRLKQVVMNLVSNGIKFTHEGYISIRVEL-------------------- 481
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
VE+N +F V DTG GI +++ +F+ F Q +
Sbjct: 482 --------------------VEKNEENACIKFSVTDTGIGISDEQKKLLFQVFTQGDAST 521
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT-AVCERERP----- 674
G GLGL I + +V LMKGEI + + E G +G F F++ L A C R
Sbjct: 522 SRKYGGTGLGLAICKRLVELMKGEINV-ESEVG-KGSTFSFSLRLKIASCNENRNGKSKS 579
Query: 675 -DTDEE 679
DT+E+
Sbjct: 580 VDTEEQ 585
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 86/137 (62%), Gaps = 14/137 (10%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
+E+ K L+VED ++ L++T +L +G + ++G+EA K+ ++
Sbjct: 582 TEEQYKNVKILLVEDSSVNLQMTKEILENMGIDTDTAQSGEEAV-----------KKAES 630
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075
Y+ I+MD MP M+G+EATR IRK E +PI+ALTA A+ GVA K +AGM+ +
Sbjct: 631 NEYELILMDIRMPGMDGYEATRRIRKLERG---SMPIVALTADAVEGVAQKAKEAGMNGY 687
Query: 1076 LTKPLQKDKLLDVVKSI 1092
LTKPL+ +KLL+V++S+
Sbjct: 688 LTKPLEPEKLLEVIRSM 704
>gi|197119422|ref|YP_002139849.1| PAS/GAF domain-containing sensor histidine kinase response
regulator [Geobacter bemidjiensis Bem]
gi|197088782|gb|ACH40053.1| sensor histidine kinase response regulator, PAS and GAF
domain-containing [Geobacter bemidjiensis Bem]
Length = 947
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 140/288 (48%), Gaps = 53/288 (18%)
Query: 391 SMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTC---SKDLLGIL 447
S K+ LA SH++R + ++G+++L + +DL E IRT + LL IL
Sbjct: 568 SRTKSQFLANMSHELRTPMTGVLGMLDLALQSP---SDL-ERSDYIRTAYRSGRSLLQIL 623
Query: 448 NSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHV 507
N ++++SK+EAGK L + F+L + E VD+ +KG+++ LD V
Sbjct: 624 NDILDLSKVEAGKYSLDLKPFSLKSCVAEAVDIAAPEAKRKGIELELDLAQDL---PARV 680
Query: 508 RGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFR 567
GD+V+L+Q+L NLV N++KFT G ++V+ V K+
Sbjct: 681 AGDQVRLRQVLTNLVGNAVKFTERGRVTVQVEVADKT----------------------- 717
Query: 568 NKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGL 627
EG +LL+ F V DTG GIP+DK++ +F+ F Q+ ++ + G
Sbjct: 718 -PEG-------------ESLLR--FRVSDTGIGIPQDKRHLLFQAFSQIDDSNTRNYGGT 761
Query: 628 GLGLGIVQSMVHLMKGEIAIADKEPGER-GVCFRFNVLLTAVCERERP 674
GLGL I + +V M GEI E GE G F F L E+P
Sbjct: 762 GLGLAISKEIVQRMGGEIGF---ESGEGVGSTFTFTARLVVPHPDEQP 806
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 76/123 (61%), Gaps = 13/123 (10%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+ L G + L+ EDDA + +V + +L +L + +G + + ++ ++G+
Sbjct: 822 QELAGLRLLIAEDDATIRQVLATMLQRLQFSVDFAEDGAK--------VVEMWRQGE--- 870
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
YD I+MD +MP M+G++ATR IR++E+ IPIIA+TAHAM + +DAGMD +++
Sbjct: 871 YDLILMDVQMPRMDGFQATRAIREQEQ--GGRIPIIAMTAHAMKEDQRRCLDAGMDDYIS 928
Query: 1078 KPL 1080
KP+
Sbjct: 929 KPI 931
>gi|424046470|ref|ZP_17784033.1| his Kinase A domain protein [Vibrio cholerae HENC-03]
gi|408885091|gb|EKM23813.1| his Kinase A domain protein [Vibrio cholerae HENC-03]
Length = 639
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 143/289 (49%), Gaps = 46/289 (15%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A ++AE + K+ LA SH++R + IIG+ L D + + +I + S
Sbjct: 232 EARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLLG-DTKLDEQQKDFVSIINSSSN 290
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
L+ I++ +++ SKIEAGK+EL +NL LL EV ++ +KG+ +V CD
Sbjct: 291 SLMVIIDDILDFSKIEAGKIELETATYNLLDLLHEVGRLHTVKAQQKGLQLV---CDIDA 347
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
V GD +LKQ+L NL+SN++KFT GH+ + ++S+
Sbjct: 348 QLPSEVEGDVGRLKQVLSNLLSNAVKFTERGHVKL-------------------MVSQV- 387
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
++EG D+ ++H F V D+G GI K+ Q ++FE+F Q +
Sbjct: 388 ------SREG--DVASVH------------FRVVDSGIGIAKENQQAVFEKFQQADGSTT 427
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
G GLGL I S++ +M GEI + EPG G CF F + L V +
Sbjct: 428 RKYGGTGLGLAICSSLIEVMGGEIRLT-SEPG-LGSCFEFTIPLNIVSD 474
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 13/126 (10%)
Query: 961 NGKKF-LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
GK + LVVED A+ KV +L KLG + V +G+EA ++ + +D
Sbjct: 504 EGKPWILVVEDTAVNQKVVRIMLEKLGMQVNVAEHGEEAL-----------QQCQEHQFD 552
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MDC+MPVM+G+ AT IRK E + + +PIIAL+A+ + + D GM+ + KP
Sbjct: 553 LILMDCQMPVMDGFIATENIRKMGE-WGLQVPIIALSANVIKEDQQRCFDVGMNEFVAKP 611
Query: 1080 LQKDKL 1085
+ K++L
Sbjct: 612 VTKERL 617
>gi|242280815|ref|YP_002992944.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
gi|242123709|gb|ACS81405.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
Length = 568
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 134/291 (46%), Gaps = 67/291 (23%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
+AE S KT LA SH++R + +I+G+VEL E N + E L + T + LL
Sbjct: 337 KAETASKVKTEFLANMSHEIRTPMHSILGMVELLKE-TNVDEEQREFLNIAGTAGESLLE 395
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
I+N V+E+SKIEAG +++ EF L +++E VV ++ +KG+ +V C
Sbjct: 396 IINDVLEISKIEAGHLQIERHEFLLREMVERVVSVFALDAARKGLKLV-----------C 444
Query: 506 H--------VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
H V GD +++Q+L NL+SN++KFTSEG I V I +I
Sbjct: 445 HIDENVPDKVVGDATRIRQVLNNLISNAVKFTSEGTIVV-----------SIYWEAEKLI 493
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
F V D G GI DK N IFE F Q
Sbjct: 494 ----------------------------------FAVKDEGIGIAADKINYIFESFTQAD 519
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
+ G GLGL I + +V +M GEI + GE G FRF V L +V
Sbjct: 520 SSTSRKYGGTGLGLPISRKLVSMMGGEIFVCSS-VGE-GTTFRFYVNLGSV 568
>gi|411119835|ref|ZP_11392211.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
gi|410709991|gb|EKQ67502.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
Length = 1645
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 144/300 (48%), Gaps = 34/300 (11%)
Query: 375 AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLG 434
AA ++ A E AE + K+ LA SH++R L I+G ++ + N D + L
Sbjct: 1146 AAEVELKAAKETAEVANRAKSEFLANMSHELRTPLNGILGYAQILKRNRNLPEDTLQELD 1205
Query: 435 LIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL 494
I C + LL ++N V+++SKIEA ++EL +F+L L + D++ +KG+ +
Sbjct: 1206 TIYQCGEHLLVLINDVLDLSKIEARRLELCLNDFHLPSFLRAIADLFRLRAQQKGISFLY 1265
Query: 495 DPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
+P + + D +L+Q+L NL+SN++KFT +G ++ FK +I
Sbjct: 1266 EPLNDL---PTAIHADEQRLRQVLINLLSNAIKFTDQGGVA---------FKVGVIEGEE 1313
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
RN+E D + + F+V+DTG GI + IF F
Sbjct: 1314 A-----------RNQELEDRSQEAEN--------RIRFQVEDTGIGIAPENLEEIFLPFQ 1354
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
QV + + EG GLGL I + +V LM E+ + PG+ G F F + L + ++P
Sbjct: 1355 QVGDRQRMN-EGTGLGLAISRKLVDLMGSELKVRST-PGQ-GSTFWFELPLKKIESWQQP 1411
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 25/134 (18%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K LVV++ V +L LG + NG+EA K +D + D I
Sbjct: 1427 RKILVVDERQENRWVLVRLLSPLGFEMAEASNGQEAL----KTATDFQP-------DVIF 1475
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIP------IIALTAHAMAGVASKIVDAGMDFHL 1076
MD MPVM+G+EATR +R+ +P IIA +A A ++ G + L
Sbjct: 1476 MDLVMPVMDGFEATRQLRR--------LPNFQNTIIIAASASAFEHDQQTSLNVGCNDFL 1527
Query: 1077 TKPLQKDKLLDVVK 1090
+KP+Q + LL +++
Sbjct: 1528 SKPIQYEHLLSMLQ 1541
>gi|375012435|ref|YP_004989423.1| PAS domain-containing protein [Owenweeksia hongkongensis DSM 17368]
gi|359348359|gb|AEV32778.1| PAS domain S-box [Owenweeksia hongkongensis DSM 17368]
Length = 1360
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 131/282 (46%), Gaps = 51/282 (18%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA SH++R + +IG+ L + L + + IR LL ++N +++ SKIE
Sbjct: 847 LATMSHEIRTPMNGVIGMTSLLLQTKLNAEQL-DYVNTIRLSGDALLSVINDILDFSKIE 905
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGSCHVRGDRVKLK 515
AG M L E F + Q +EE V++ +KG++++ +DP +V V GD +L+
Sbjct: 906 AGNMSLEEFPFEITQCVEEAVELLSSRVSEKGIELLYFIDPSVPAV-----VSGDITRLR 960
Query: 516 QILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDL 575
QIL NL+SN++KFT +G I V + KKK
Sbjct: 961 QILINLLSNAIKFTEKGEIVVNVSAKKKE------------------------------- 989
Query: 576 DALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQ 635
+ +Q F V DTG GI D+Q +F F Q + G GLGL I +
Sbjct: 990 ---------DSRVQIHFSVRDTGIGITADQQKKLFTAFTQADSSTTRKYGGTGLGLAICK 1040
Query: 636 SMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTD 677
+ LM GEI + + PG G F+F + + V + R +TD
Sbjct: 1041 RLTSLMDGEIWV-ESTPG-GGSDFQFTI-MQEVIRQHRIETD 1079
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 18/139 (12%)
Query: 955 CSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK 1014
S+ PL L+ ED+ + K+ L K+G +V NG E + + +
Sbjct: 1231 ASKHPLT---ILLAEDNMVNQKLAVLTLEKMGYHMDVVANGFEVLEAIER---------- 1277
Query: 1015 ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMD 1073
YD I MD +MP M+G EAT I + Y + P I+A+TA+AM G + ++ GMD
Sbjct: 1278 -QSYDLIFMDVQMPEMDGIEATHEILR---IYGHNRPSIVAMTANAMEGDRERFLEEGMD 1333
Query: 1074 FHLTKPLQKDKLLDVVKSI 1092
+++KP+ D + +++ I
Sbjct: 1334 DYISKPINIDSIKNILIKI 1352
>gi|307718270|ref|YP_003873802.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192]
gi|306531995|gb|ADN01529.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192]
Length = 1272
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 142/301 (47%), Gaps = 46/301 (15%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
K A E+AER K+ LA SH++R L AIIG +L G + A L IR+
Sbjct: 777 KLKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASSFPSGKE-ASYLDAIRS 835
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
K+LL ++N ++++SKIEAGKM L +L +EE+ +++ KG+ +LD
Sbjct: 836 SGKNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVEHKGLSFILDYAP 895
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
V D ++L+Q+L NL+ N++KFT +GH+ V+
Sbjct: 896 AL---PPTVEIDELRLRQVLFNLIGNAIKFTEQGHVKVQVR------------------- 933
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
+LH+ E +L V+DTG GI +++ +IF+ F Q
Sbjct: 934 -----------------GSLHTEESKVDLT---ISVEDTGIGIRPEEREAIFQSFHQSSG 973
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL-LTAVCERERPDTD 677
G GLGL I + +V +M G I++ + E G +G F N+ LT ER T+
Sbjct: 974 QDTRKYGGTGLGLTISKRLVEMMGGTISV-ESEYG-KGTTFTVNIPDLTCSTERMVSATE 1031
Query: 678 E 678
E
Sbjct: 1032 E 1032
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 13/151 (8%)
Query: 941 CSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFD 1000
CS+ + V+A + GK LVV+D + + L GA NG+EA
Sbjct: 1021 CSTERMVSATEETGGDVPMYEGKVILVVDDKDLNRTLLKEYLAPTGATVIEASNGQEALS 1080
Query: 1001 HVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAM 1060
+A P D I+MD MPVM+G + ++ + IP+IALTA +
Sbjct: 1081 R-----------AEAHPPDLILMDIRMPVMDGLSFIKEYYRDPSHRN--IPVIALTASVL 1127
Query: 1061 AGVASKIVDAGMDFHLTKPLQKDKLLDVVKS 1091
+ + G LTKP+QKD L ++S
Sbjct: 1128 KERHEEFLRNGFVEVLTKPIQKDALFSTLRS 1158
>gi|381160288|ref|ZP_09869520.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380878352|gb|EIC20444.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1438
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 137/284 (48%), Gaps = 47/284 (16%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRTCSKDLLGILNS 449
K+ LA SH++R + AI+G+ LC E T+L E L +T ++ LLG+LN
Sbjct: 830 KSEFLANMSHEIRTPMNAILGMQHLCLE-----TELDERQRQYLTKAQTAAQALLGLLND 884
Query: 450 VMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRG 509
++++SKIEAG++ L F L+Q+ ++++D+ KG++ +LD C V + H G
Sbjct: 885 ILDLSKIEAGQLHLEARPFALSQVFDQLLDIVGRQAEDKGLEFLLD-CAPEVPDALH--G 941
Query: 510 DRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNK 569
D ++L Q+L NL +N++KFT++G + + A + ++ Q R
Sbjct: 942 DALRLGQVLLNLANNAVKFTAQGSVRIEARLLQRLPAQGSATRER--------------- 986
Query: 570 EGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629
+Q EF V DTG G+ + +F+ F Q + G GL
Sbjct: 987 ------------------VQLEFLVCDTGIGLQEKDIAKLFQPFQQADGSITRRYGGTGL 1028
Query: 630 GLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
GL I + +V +M G I + D PGE G F F + ER
Sbjct: 1029 GLSICKRLVTMMGGNIGV-DSRPGE-GSTFWFTLWSQCALPGER 1070
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 936 SISSHCSSLQQVAAQSDGKCSEKP---LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVC 992
++ S C+ + + K +P L G++ L+VED+A+ +V A+L + G
Sbjct: 1059 TLWSQCALPGERVGEERSKALTQPPAELAGRRVLLVEDNAVNREVARAMLEQAGIMVSEA 1118
Query: 993 RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPI 1052
+G A +L D +G A +D ++MD +MP ++G +A+R IR D +PI
Sbjct: 1119 EHGAAAL----VLLGD---QGCA-AFDLVLMDLQMPELDGLKASRRIRVLPGGAD--LPI 1168
Query: 1053 IALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
I LTAH +AGM HL KPL +L
Sbjct: 1169 IGLTAHVRDEDIRCTREAGMTAHLGKPLDVTRL 1201
>gi|440232360|ref|YP_007346153.1| signal transduction histidine kinase [Serratia marcescens FGI94]
gi|440054065|gb|AGB83968.1| signal transduction histidine kinase [Serratia marcescens FGI94]
Length = 1178
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 146/293 (49%), Gaps = 55/293 (18%)
Query: 377 LIKQM-NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA--ENL 433
LI+Q+ A E A+R + KT LA SH++R L AIIG++EL + PG +LA E L
Sbjct: 676 LIEQLRQAKEHADRANRAKTTFLATMSHEIRTPLNAIIGMLELLL-NRQPGDELADIELL 734
Query: 434 GLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV 493
G+ + LL ++ ++++S+IEA ++ L + ++ +L+E + ++ + +KG+D
Sbjct: 735 GVAHESAHSLLTLIGDILDISRIEADRLVLHPQRTDIRRLIESMAMLFDGLARQKGLDFR 794
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
L+ D + G V D V+ KQ+L NLVSN++KFTS+G I++ A V+K +
Sbjct: 795 LE-IDAEITGDVLV--DPVRFKQVLSNLVSNAIKFTSQGQITLSAVVEKVT--------- 842
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
KE FD +V DTGKGI +F+ F
Sbjct: 843 ---------------KEHFD----------------LRLQVSDTGKGIDARTLRRLFQPF 871
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
Q + G GLGL I + +V +M G I++ E G+ F V L+
Sbjct: 872 TQGQNDV----GGAGLGLFICRKLVAMMGGFISVN----SEVGLGSEFTVALS 916
Score = 46.6 bits (109), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 944 LQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVC 1003
LQ A + + KP + LV ED + S L LG +G +A
Sbjct: 921 LQVQAPPPNDRALPKPARCLRVLVAEDHHAGRMLLSRQLTYLGHIPTAAEDGAQA----- 975
Query: 1004 KILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR-KEEEQYDVHIPIIALTAHAMAG 1062
L+ L + +D ++ DC+MP M+G+ +R IR E E++ I LTA+A
Sbjct: 976 --LALLEQAH----FDLVITDCQMPNMDGYSLSRRIRLNERERHLASSTIWGLTANAQES 1029
Query: 1063 VASKIVDAGMDFHLTKPL 1080
+ AGMD L KP+
Sbjct: 1030 AREACLRAGMDDCLFKPV 1047
>gi|119510682|ref|ZP_01629810.1| two-component system sensory histidine kinase [Nodularia spumigena
CCY9414]
gi|119464636|gb|EAW45545.1| two-component system sensory histidine kinase [Nodularia spumigena
CCY9414]
Length = 574
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 152/311 (48%), Gaps = 46/311 (14%)
Query: 360 IILIAKAAKREMFLCAALIKQM-NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVEL 418
I L+AK+ R + + K++ A E AE S K+ LA SH++R L A+IGL +L
Sbjct: 303 IGLLAKSLNRLIERVSERTKELEQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQL 362
Query: 419 CHEDANP---GTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLE 475
+DA D +L I + + LL ++N ++++SKIEAGKM L E F +A+L+
Sbjct: 363 LQDDATDLDLTGDFITDLETINSAGRHLLELINDILDLSKIEAGKMTLYPETFEIAKLIN 422
Query: 476 EVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHIS 535
VV + I K +++ CD LG+ + D+ +++Q+L NL+SNS KFT+ G ++
Sbjct: 423 NVV-LTVKSAIDKNNNILEVYCDQQ-LGTMY--ADQTRMRQVLLNLLSNSAKFTTNGKVT 478
Query: 536 VRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVD 595
+ VK++ K D+ + FD F V
Sbjct: 479 L--TVKRE--KTDLPP-----------------EAAFD---------------MITFSVT 502
Query: 596 DTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGER 655
DTG G+ + +Q +F+ F Q + G GLGL I + +M GE+ + +PG
Sbjct: 503 DTGIGMSESQQQQLFKPFTQGDTSTTKRYGGTGLGLAISRHFCQMMGGEVFVKS-QPG-V 560
Query: 656 GVCFRFNVLLT 666
G F ++ LT
Sbjct: 561 GSTFTVHLPLT 571
>gi|395225868|ref|ZP_10404378.1| signal transduction histidine kinase [Thiovulum sp. ES]
gi|394445947|gb|EJF06805.1| signal transduction histidine kinase [Thiovulum sp. ES]
Length = 906
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 143/297 (48%), Gaps = 60/297 (20%)
Query: 358 LFI-ILIAKAAKREMFLCAALIKQMNATEQAER--KSMN--KTFALAKASHDVRASLAAI 412
LFI I+K R ++ K+ N E+ + KS N K+ +A SH++R + AI
Sbjct: 215 LFIGFYISKRVTRTIYEFVQ--KEKNTLEEIAKVEKSANEAKSIFIATMSHEIRTPMNAI 272
Query: 413 IGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQ 472
+GL E+ ++ + + E I LL I+N +++ SK+EAG++EL E +L
Sbjct: 273 LGLTEIL-QNTDLDQEQYEFTETIYNSGNSLLDIINDILDYSKVEAGRLELEELNTDLEN 331
Query: 473 LLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC--HVRGDRVKLKQILCNLVSNSMKFTS 530
L+ +VV + H +KGV +++D C +C ++ D +LKQ+L NLV N++KFT
Sbjct: 332 LVNDVVFLLEHNANEKGVRLIVDYC-----STCPQFIKCDPSRLKQVLINLVGNAIKFTK 386
Query: 531 EGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQF 590
GH+ +R K++ NLL
Sbjct: 387 SGHVLLRVGKKEE------------------------------------------NLL-- 402
Query: 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
FE++DTG GIP+ K ++F F QV + G GLGL I + M+ LM G+I +
Sbjct: 403 -FEIEDTGIGIPEKKLKNLFTIFTQVDSSTTREYGGSGLGLAISKKMIELMGGKIGV 458
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 944 LQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVC 1003
L Q QS ++K + K LV ED + V +L + + +G+EA +
Sbjct: 629 LNQKMKQSKDTEAKKFIG--KVLVAEDTKANVIVIKTLLKSFNLEVSIANDGQEALNLY- 685
Query: 1004 KILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGV 1063
K+ ++ + MD MP M+G EAT+LIRK EE PIIALTA +
Sbjct: 686 ----------KSENFNLVFMDLRMPNMDGLEATKLIRKYEEISHKFTPIIALTADVIQQT 735
Query: 1064 ASKIVDAGMDFHLTKPLQ 1081
AGM+ ++ KP +
Sbjct: 736 KEDTEQAGMNGYIAKPFK 753
>gi|186681490|ref|YP_001864686.1| integral membrane sensor signal transduction histidine kinase HepK
[Nostoc punctiforme PCC 73102]
gi|4336932|gb|AAD18016.1| histidine kinase [Nostoc punctiforme PCC 73102]
gi|186463942|gb|ACC79743.1| integral membrane sensor signal transduction histidine kinase HepK
[Nostoc punctiforme PCC 73102]
Length = 574
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 147/311 (47%), Gaps = 46/311 (14%)
Query: 360 IILIAKAAKREMFLCAALIKQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVEL 418
I L+AK+ R + + K++ A E AE S K+ LA SH++R L A+IGL +L
Sbjct: 303 IGLLAKSLNRLIERVSERTKELQQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQL 362
Query: 419 CHEDANP---GTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLE 475
+DA D +L I + K LL ++N ++++SKIEAGKM L E F +A L+
Sbjct: 363 LEDDATDLGLSADFITDLETINSAGKHLLHLINEILDLSKIEAGKMTLYPETFEIATLIN 422
Query: 476 EVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHIS 535
VV + I+K +V+ D LG+ + D+ +++Q+L NL+SN+ KFT+ G ++
Sbjct: 423 NVV-LTVKPAIEKNANVLEVHFDEQ-LGTMY--ADQTRMRQVLLNLLSNASKFTTNGKVT 478
Query: 536 VRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVD 595
+ +K+ + LDA L F V
Sbjct: 479 LTVKREKEELR----------------------------LDA--------PLGMITFTVT 502
Query: 596 DTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGER 655
DTG G+ +Q +F+ F Q + G GLGL I + +M GEI I +PG
Sbjct: 503 DTGIGMSNRQQQQLFQPFTQGDTSTTKKYGGTGLGLAISRHFCQMMGGEI-IVKSQPG-L 560
Query: 656 GVCFRFNVLLT 666
G F + +T
Sbjct: 561 GSTFTIRLPMT 571
>gi|26988825|ref|NP_744250.1| two-component sensor protein [Pseudomonas putida KT2440]
gi|24983627|gb|AAN67714.1|AE016402_6 two-component sensor protein [Pseudomonas putida KT2440]
Length = 1211
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 142/308 (46%), Gaps = 53/308 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A +QA+ + K+ LA SH++R + A+IG++EL + A+ G L L +K
Sbjct: 700 QAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGRVDRSALELAHHSAK 759
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG--VDVVLDPCDG 499
DLLG++ ++++ +IE+G + L E +LA L+E V ++ +KG ++V + P
Sbjct: 760 DLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARIFDGQARQKGLALEVQIAPA-- 817
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
CHV D ++ KQ+L NLVSN++KFT G + + +
Sbjct: 818 ---ARCHVLLDPLRFKQVLSNLVSNAIKFTEHGQVRISVRL------------------- 855
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
DD + +V E EV D+G GI D +F F+Q
Sbjct: 856 ------------LDDGTSTPAV--------LELEVRDSGIGIHPDDLQRLFNPFIQANPH 895
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT--- 676
+ G + G GLGL I +++ +M G +++ E + G R + L V E+P
Sbjct: 896 SQGARAGTGLGLAICRNLCEMMGGSLSMKSLE--DVGTQVRLKMPLQRVDGAEQPKPLPE 953
Query: 677 --DEEDPR 682
D DPR
Sbjct: 954 QLDVPDPR 961
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 22/139 (15%)
Query: 952 DGKCSEKPLNGK--------KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVC 1003
DG KPL + LV++D L++ + LG LG + R+G+E
Sbjct: 943 DGAEQPKPLPEQLDVPDPRLNVLVIDDHPANLQLMAQQLGYLGLEHASARDGQEGLATW- 1001
Query: 1004 KILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP--IIALTAHAMA 1061
+EG +D +++DC MP MNG++ +R EE++ P I+ TA+A
Sbjct: 1002 -------REGD---FDVLVLDCNMPHMNGYQLATAVRA-EERHGKRPPCTILGYTANAQP 1050
Query: 1062 GVASKIVDAGMDFHLTKPL 1080
V K + AGMD L KP+
Sbjct: 1051 EVRRKCLTAGMDDCLLKPI 1069
>gi|359485817|ref|XP_002269977.2| PREDICTED: histidine kinase 2-like [Vitis vinifera]
Length = 1272
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 165/336 (49%), Gaps = 31/336 (9%)
Query: 352 GVISLGLFIILIAKAAKREMFLCAALIKQMNATE-QAERKSMNKTFALAKASHDVRASLA 410
GV+ + L + I AA + +QM + +AE + K+ LA SH++R +
Sbjct: 626 GVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAEAADVAKSQFLATVSHEIRTPMN 685
Query: 411 AIIGLVELCHE---DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEE 467
++G++++ + DAN D AE KDL+ ++N V++ +KIE+G++EL
Sbjct: 686 GVLGMLKMLMDSGLDANQ-QDYAET---AHASGKDLISLINEVLDQAKIESGRLELEAVP 741
Query: 468 FNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMK 527
F+L L+ V+ ++ +KG+++ + D V GD + +QI+ NLV NS+K
Sbjct: 742 FDLRAALDNVLSLFSGKSHEKGIELAVYISDQV---PEFVIGDPGRFRQIITNLVGNSIK 798
Query: 528 FTSE-GHISVRA-----AVKKKSFKQDIIASNRNVISKCLSKLF-----------FRNKE 570
FT + GHI V V + +++ + N++ + + +++ E
Sbjct: 799 FTHDKGHIFVSVHLADEVVGPPDLRDEVLRQSLNIVHDSSNNSYNTLSGFPVVNRWKSWE 858
Query: 571 GFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLG 630
F L S+E ++++ V+DTG GIP + Q+ IF F+Q + G G+G
Sbjct: 859 KFKKLSCTDSMEET-SIIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGTGIG 917
Query: 631 LGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
L I + +V LM GEI + EPG G F F V T
Sbjct: 918 LSISKRLVDLMGGEIGF-ESEPGT-GSTFSFTVAFT 951
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 28/154 (18%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L K+ LVV+D+A+ +V L K GA +GK A L L+ +D
Sbjct: 1128 LREKRILVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAA-------LLMLKPPHN---FD 1177
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHIPIIALTAHAMA 1061
MD +MP M+G+ AT+ IR+ E + + H PI+A+TA +
Sbjct: 1178 ACFMDLQMPEMDGFRATQEIRRMESKVNERIKSGEVSIEMFANVAYWHTPILAMTADVIQ 1237
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095
+ + GMD ++ KP ++D+L V E+
Sbjct: 1238 ANNEECMKCGMDGYVAKPFEEDQLYSAVAHFFES 1271
>gi|428319304|ref|YP_007117186.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428242984|gb|AFZ08770.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 2163
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 146/304 (48%), Gaps = 24/304 (7%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E AE + K+ LA SH++R L I+G ++L D N D E+L I C
Sbjct: 1630 AKEAAESANRAKSDFLANMSHELRTPLNGILGYIQLLKADKNFTADQQESLNNINQCGNH 1689
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V+++SKIEA KM+L N + ++ ++D++ +KG+ +
Sbjct: 1690 LLMLINDVLDLSKIEASKMDLSLTNVNFSSFVKSIIDLFQMRSAQKGIAFNYEQVSALPD 1749
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAV-------------KKKSFKQDI 549
G + D +L+Q+L NL+SN++KFT+ G ++ + + S +I
Sbjct: 1750 G---ILADEKRLRQVLINLLSNAVKFTNSGSVTFKVGYAENFADNSPQTNCENSSLTAEI 1806
Query: 550 IASNRNVISKCLSKLF----FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDK 605
N+ + + L E + + A ++ +R P + F+++DTG GI ++K
Sbjct: 1807 ATQTLNLTANLDAPLLSLPPLGTTEAREVITAANTCDRPPT-PKIRFQIEDTGIGIGQNK 1865
Query: 606 QNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
IF F QV + EG GLGL I Q +V +M +I + + +G F ++ L
Sbjct: 1866 LEEIFLPFHQVGDHN-NFVEGTGLGLSISQKLVKMMGSQIRV--QSTSGKGSIFWVDLDL 1922
Query: 666 TAVC 669
AV
Sbjct: 1923 PAVA 1926
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 25/150 (16%)
Query: 939 SHCSSLQQVAAQSDGKCSEKPLNG-----KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCR 993
+HCS L + ++ L G +K L+V+D + + +L LG +
Sbjct: 1926 AHCSEL-------PSRPEKRRLVGFTGPQRKVLIVDDHEVNRAMLHRLLFHLGFEIAEAT 1978
Query: 994 NGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPII 1053
+G++ L K + LP D I+MD MPVMNGWEATR +R+ E D I+
Sbjct: 1979 DGEDC----------LHKAQEFLP-DIILMDLLMPVMNGWEATRRLRQLPELKDT--VIL 2025
Query: 1054 ALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
AL+A+ + + AG D LTKP+Q +
Sbjct: 2026 ALSANVYETTKQESILAGCDNFLTKPIQTN 2055
>gi|158340478|ref|YP_001521472.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
gi|158310719|gb|ABW32333.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
Length = 929
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 153/306 (50%), Gaps = 36/306 (11%)
Query: 375 AALIKQMNATE-QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENL 433
A L+ Q+ ++ +AE + K+ LA SH++R L AI+G +L D N +NL
Sbjct: 399 AELLNQLRESKNKAEAANQAKSAFLANMSHELRTPLNAILGFSQLLARDENLTLSQKQNL 458
Query: 434 GLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV 493
I LL ++N V+EMSKIEAGK+ L +L LL+ + +M+ KG +V
Sbjct: 459 NSINRSGSHLLNLINDVLEMSKIEAGKISLNPTNCDLLLLLDSLQEMFALKAKSKG--LV 516
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
L+ S + ++ D +L+Q+L NL++N++KFT G +++R + + S ++
Sbjct: 517 LNIQKSSKI-PLYIYIDENRLRQVLINLLTNALKFTESGSVTLRVSTQAISLPEESATHP 575
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
+N ++ L+ FEV+DTG GI +D+ + IF+ F
Sbjct: 576 QNDTTQPSLSLY--------------------------FEVEDTGIGIAEDELDDIFDAF 609
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
+Q + QEG GLGL I V+LM+G+I + ++ G+ F + VC E
Sbjct: 610 IQTS-SGQQSQEGTGLGLAICHHFVNLMQGDIQLQSRQ-GQGTTVF----MQIPVCIPEN 663
Query: 674 PDTDEE 679
D +E+
Sbjct: 664 KDVEEQ 669
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 37/152 (24%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED+ L++ ++ +G +G+ A C +A I M
Sbjct: 685 RMLIVEDNLENLQIMHRLMTDMGFDVRTVNDGEAAIS--C---------WEAWHPHIIWM 733
Query: 1024 DCEMPVMNGWEATRLIRKEEEQY--------------------------DVHIPIIALTA 1057
D +PV NG+EAT+ IR E QY D IIALTA
Sbjct: 734 DWCLPVKNGFEATKTIRSLESQYRQNTVDSIAQSKHSAHPSSSLKTDLSDSRTIIIALTA 793
Query: 1058 HAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
++ +AG D L+KP Q+ L +++
Sbjct: 794 SVFEDTQTECKEAGCDDFLSKPYQQSVLFELL 825
>gi|149277586|ref|ZP_01883727.1| sensory transduction histidine kinase [Pedobacter sp. BAL39]
gi|149231819|gb|EDM37197.1| sensory transduction histidine kinase [Pedobacter sp. BAL39]
Length = 763
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 136/283 (48%), Gaps = 46/283 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+NA AE+ + K+ L+ SH++R + A+IG L ++ NP + E L L++
Sbjct: 379 INAKVVAEQAANAKSEFLSTMSHEIRTPMNAVIGFTNLLLQN-NPAQEQLEYLNLLKFSG 437
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
++LL ++N +++ SKI+ GK+ FNL +LLE++ + KG+++ L D S
Sbjct: 438 ENLLVLINDILDFSKIQEGKISFEMIGFNLPELLEKIRKTFMQAARDKGLELTL-TVDQS 496
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
++ S + GD V+L QIL NL++NS+KFTS G +S+ + + + I+ C
Sbjct: 497 IINS--IVGDPVRLGQILINLITNSIKFTSSGSVSIDVWKEHEDLEH---------ITIC 545
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
FE+ DTG GI +D+ IF+ F Q
Sbjct: 546 -------------------------------FEIADTGIGIAEDRIADIFDRFTQASSDT 574
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + ++ L G +++ K G F+F +
Sbjct: 575 NRKYGGTGLGLSITKQLIELQGGSLSVTSKL--NEGSTFQFRL 615
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Query: 950 QSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDL 1009
++D + L G + L+ ED+ + + + + ++V +NG+ A + V K
Sbjct: 629 KTDTATEKANLKGMRILLAEDNEVNILLMKQFMRLWEVSYDVVKNGRLALEQVIK----- 683
Query: 1010 RKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVD 1069
YD ++MD +MP M+G++AT IR ++ ++PIIALTA AM ++
Sbjct: 684 ------QDYDVVLMDIQMPEMDGYDATIAIRSLPDEKYKNLPIIALTASAMLDAKDRVFT 737
Query: 1070 AGMDFHLTKPLQKDKLL 1086
GM+ L+KP + L
Sbjct: 738 VGMNDFLSKPFAPEDLF 754
>gi|262277330|ref|ZP_06055123.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium
HIMB114]
gi|262224433|gb|EEY74892.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium
HIMB114]
Length = 998
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 50/277 (18%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA--NPGTDLAENLGLIRTCSKD 442
E+AE+ + K+ LA SH++R + AIIG E+ EDA N + +L I + K
Sbjct: 499 EEAEQANKAKSAFLANMSHELRTPMNAIIGYSEILTEDATDNQHQEYIPDLKKINSAGKH 558
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N ++++SKIEAGKMEL ++ N L +EV D + K G + + D S+
Sbjct: 559 LLQLINDILDISKIEAGKMELDIQDINFTSLAQEVADTSDALVTKNGNTLKI-IKDESIQ 617
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
G + GD VK+KQIL NL+SN+ KFT G I++ K+++ D N +S
Sbjct: 618 G---ITGDSVKIKQILFNLISNAAKFTENGTITLGY----KTYQDD-----NNFLS---- 661
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
V DTG GI KDK +FEEF Q +
Sbjct: 662 -----------------------------IYVQDTGIGIEKDKAAKVFEEFGQADSSTTR 692
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
G GLGL +V+ LM G I + + E G +G F
Sbjct: 693 KYGGTGLGLSLVKKFSELMGGSIKL-ESEIG-KGSTF 727
Score = 43.9 bits (102), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 19/169 (11%)
Query: 930 GAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKF-LVVEDDAIVLKVTSAVLGKLGAK 988
G+ +I + S+ + + D K +E+ GKK LVV+DD + L K G
Sbjct: 724 GSTFTVTIPKNISTSESIT--EDVKNNEEIETGKKIILVVDDDKSARDLIKRNLEKEGYI 781
Query: 989 FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDV 1048
NG EA + + L I +D MP +GWE + +R+ + D
Sbjct: 782 VLTASNGDEAIEIANQKNPHL-----------ITLDIMMPKKSGWETLKALREYIKFKDT 830
Query: 1049 HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097
P+I ++ A + G D +L KP+ ++KL+D + E M+
Sbjct: 831 --PVIMISMLDDDNTAKGL---GADDYLKKPVDRNKLIDAITKQKEKMK 874
>gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506]
gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506]
Length = 1823
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 135/280 (48%), Gaps = 35/280 (12%)
Query: 377 LIKQMNATEQA----ERKSMNKTFALAKASHDVRASLAAIIGLVELCHE-DANP-GTDLA 430
L +Q A EQA E + K+ LA SH++R + A+IG+ L + D P D
Sbjct: 1020 LAEQNEALEQARQAAEVANRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMDLTPEQRDFV 1079
Query: 431 ENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV 490
E IRT LL I+N +++ SKIE+GKM+L + F L +EE +D+ +KG+
Sbjct: 1080 ET---IRTSGDALLTIINDILDFSKIESGKMDLEQHPFELRTCIEESLDLLAPKASEKGL 1136
Query: 491 DVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDII 550
++ D SV V GD +L+QIL NL+ N++KFT G I V +K S +
Sbjct: 1137 ELAY-LIDSSV--PSKVLGDVTRLRQILVNLLGNAVKFTEAGEIVVSVTARKISERH--- 1190
Query: 551 ASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIF 610
+ L KL N + P + + V DTG GIP D+ + +F
Sbjct: 1191 -------GEELYKLPLSNYQ-------------VPVPYEIQIAVKDTGIGIPPDRMDRLF 1230
Query: 611 EEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
+ F QV + G GLGL I Q + +M G++ + K
Sbjct: 1231 KAFSQVDASTTRQYGGTGLGLAISQRLSEMMGGKMWVVSK 1270
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 85/144 (59%), Gaps = 14/144 (9%)
Query: 948 AAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKI 1005
A +++ SE NG + L+ ED+ + KV + +L ++G + ++ NG EA
Sbjct: 1516 AVRANISSSENGRNGNQLRILLAEDNLVNQKVATHLLERIGYRADIAGNGLEA------- 1568
Query: 1006 LSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVAS 1065
L LRK+ YD ++MD +MP M+G EATR I +E + + IIA+TA+AM G
Sbjct: 1569 LEALRKQF----YDVVLMDVQMPQMDGLEATRRICQEWPE-QLRPRIIAMTANAMQGDRE 1623
Query: 1066 KIVDAGMDFHLTKPLQKDKLLDVV 1089
K + AGM+ ++TKP+++++L + +
Sbjct: 1624 KCLAAGMNDYITKPVRREELANAL 1647
>gi|394989866|ref|ZP_10382699.1| hypothetical protein SCD_02292 [Sulfuricella denitrificans skB26]
gi|393791366|dbj|GAB72338.1| hypothetical protein SCD_02292 [Sulfuricella denitrificans skB26]
Length = 1650
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 133/288 (46%), Gaps = 54/288 (18%)
Query: 380 QMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGL 435
Q+ A + AE + K+ LA SH++R + AI+GL +L + T+L + L
Sbjct: 1041 QIEARQAAEAANRAKSEFLANMSHEIRTPMNAILGLTQLVLD-----TELTHHQQDFLKK 1095
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
++ LLGILN +++ SKIEAG M + + F+L + LE+V D++ +K ++++L+
Sbjct: 1096 THASARSLLGILNDILDFSKIEAGHMSIEQVPFHLQESLEQVADLFSARIEEKKLELILE 1155
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
+ GD ++L Q+L NLVSN++KFT G I ++ V
Sbjct: 1156 IAPDV---PAEILGDPLRLSQVLTNLVSNAIKFTERGEIHIKVEV--------------- 1197
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
E P Q F V DTG G+ + +F+ F Q
Sbjct: 1198 -------------------------AEHTPATQQLRFSVRDTGIGLSSGQAERLFQAFTQ 1232
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ G GLGL I + +V LM GEI+++ E +G F F +
Sbjct: 1233 ADSSTTRKYGGTGLGLAICKQLVELMGGEISVSSVEG--QGSAFIFTI 1278
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 929 FGAEAGASISSHC-SSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGA 987
F +AG + S + L A +D S + L G + L+VED+AI + + L + G
Sbjct: 1276 FTIQAGVAPSHNTVQPLSLAGAPADTVASPQGLQGVRVLLVEDNAINRLMAAEFLERRGV 1335
Query: 988 KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYD 1047
+ +G EA + V K +D ++MD MP+M+G EA RLIR E
Sbjct: 1336 SLTLAEHGGEAVERV-----------KTETFDAVLMDLHMPIMDGLEAARLIR--ELPQG 1382
Query: 1048 VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+PIIA+TA + + GM + KP+ + ++ V+
Sbjct: 1383 KSLPIIAMTAAVLQEDRDQCAAVGMVDFIAKPIDPEDMIRVL 1424
>gi|254227634|ref|ZP_04921065.1| conserved hypothetical protein [Vibrio sp. Ex25]
gi|262395682|ref|YP_003287535.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
Ex25]
gi|151939676|gb|EDN58503.1| conserved hypothetical protein [Vibrio sp. Ex25]
gi|262339276|gb|ACY53070.1| putative sensory box sensor histidine kinase/response regulator
[Vibrio sp. Ex25]
Length = 873
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 143/285 (50%), Gaps = 53/285 (18%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
+A +++++ K+ LA SH++R + AI+G+ E+ E+ N + E L L+ +
Sbjct: 363 SALDKSKKAMQAKSEFLANMSHEIRTPMNAIMGISEILLENENR-REPRELLLLLHKSAN 421
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-PCDGS 500
+L+ I+N +++ SK+EAGK+ LVEEEF+ L+E + + KK + +++D P +
Sbjct: 422 NLVTIINDILDYSKVEAGKLTLVEEEFDFRSLVESCTALCAYQADKKNLKLLVDMPLAMN 481
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ V GD+ ++ QIL NL+ N++KFT EGH+ ++
Sbjct: 482 TV----VVGDKGRINQILLNLIGNAVKFTDEGHVLLKVR--------------------- 516
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
++ GFD F V DTG GIP+D+ I ++F QV +A
Sbjct: 517 ------ESEHGFD------------------FSVSDTGIGIPEDRLAHIMDKFEQVDTSA 552
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
EG GLGL I + ++ + GE+ + +G CF F++ L
Sbjct: 553 TRRHEGTGLGLAISKRLISMYNGELCV--HSDFGKGSCFSFSLQL 595
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 12/126 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LV ED I + +L G K + +G EA + K L D ++ D
Sbjct: 743 LLVAEDSHINRILIEKMLQDTGVKLTLAEDGVEAVELY-----------KQLSPDLVITD 791
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
MP +G+ T+ IR+ +E PI+A +AHAM K + GMD +LTKP+QK
Sbjct: 792 ISMPNKDGFGVTKDIRELQESGAFPWCPIVAFSAHAMQEQQQKSIALGMDDYLTKPVQKS 851
Query: 1084 KLLDVV 1089
LL+++
Sbjct: 852 DLLNMI 857
>gi|415903933|ref|ZP_11552291.1| hypothetical protein HFRIS_00489 [Herbaspirillum frisingense GSF30]
gi|407763621|gb|EKF72257.1| hypothetical protein HFRIS_00489 [Herbaspirillum frisingense GSF30]
Length = 729
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 161/327 (49%), Gaps = 58/327 (17%)
Query: 342 LMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKA 401
LML+ + + G+I G F + + +A +RE AAL Q+ E+A+ + K+ LA
Sbjct: 263 LMLVAAISLVGLI--GGFAVALRQAQRREQ--DAALAMQLK--EEADSANEAKSRFLAMV 316
Query: 402 SHDVRASLAAIIGLVELCHED--ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAG 459
SH++R + I+GL EL E ++ A++ I S L+ I+N +++ SKIE+G
Sbjct: 317 SHEIRTPMNGILGLSELLMESGLSSKQRHYADS---IHNASGGLVRIINDILDFSKIESG 373
Query: 460 KMELVEEEFNLAQLLEEVVDMYYHVGIKKGV--DVVLDPCDGSVLGSCHVRGDRVKLKQI 517
K++L E F+ A+L +VV++Y + V D+ +D CD S+ C V GD +LKQ+
Sbjct: 374 KLDLEEVAFHPARLARDVVELYRPSIHNRAVEFDLRID-CDESL---CLV-GDPSRLKQV 428
Query: 518 LCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDA 577
L NL+SN++KFT GH+ + + +K+
Sbjct: 429 LGNLLSNAIKFTPAGHVRLSMSARKE---------------------------------- 454
Query: 578 LHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSM 637
E N + F V D+G GI + +F+ F Q T G GLGL I +++
Sbjct: 455 ----ESGLNRWRLFFAVADSGIGITPEALAQLFQPFTQADNTISRRFGGTGLGLAISKNL 510
Query: 638 VHLMKGEIAIADKEPGERGVCFRFNVL 664
V LM G+IA PG+ F F++L
Sbjct: 511 VELMGGKIA-CQSVPGQ-STRFSFDIL 535
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 111/234 (47%), Gaps = 25/234 (10%)
Query: 871 CDHVISRPFHGS--------RLIEVLKLLPECK---GASQRNFPKLKMEASSQELQHCTD 919
D+ ISR F G+ L+E++ C+ G S R + +Q L
Sbjct: 489 ADNTISRRFGGTGLGLAISKNLVELMGGKIACQSVPGQSTRFSFDILCAEGAQPLPGTGS 548
Query: 920 PNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKP--LNGKKFLVVEDDAIVLKV 977
P+P L + +A + ++ S+ V + P +NG + LV ED I ++
Sbjct: 549 PSPSPVLTASTVQAEQAPAASLSAQSPVQEAPTAAPASLPTVMNGARILVAEDTDINRQL 608
Query: 978 TSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATR 1037
+L + G + NG A D + + G+ YD ++MDC MPVM+G++AT
Sbjct: 609 LRILLARRGCVLQEVENGLLAVDAI--------RHGQ---YDLVLMDCMMPVMDGYQATA 657
Query: 1038 LIRK-EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
IR E+ Q PI+ALTA A+ G + +DAGMD +L+KP + L++ V+
Sbjct: 658 EIRAIEQAQSRPRTPIVALTASAIEGDRQRCLDAGMDDYLSKPFTQVGLMNTVE 711
>gi|333999983|ref|YP_004532595.1| multi-sensor hybrid histidine kinase [Treponema primitia ZAS-2]
gi|333740996|gb|AEF86486.1| multi-sensor hybrid histidine kinase [Treponema primitia ZAS-2]
Length = 556
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 143/294 (48%), Gaps = 49/294 (16%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
A+ S K+ L++ SH++R L AIIG+ ++ + A ++ + S LL +
Sbjct: 172 AQEASKAKSEFLSRMSHEIRTPLNAIIGMTKIARKSIENPVKAAASIDQVSAASAHLLDL 231
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH 506
+N+++++SKIE+GK E+ E FN+ + LEE+ + +K + ++ D L +
Sbjct: 232 INNILDISKIESGKFEVASEPFNIKEALEEIYIINDSRCKEKQIHFKINTEDFEAL---N 288
Query: 507 VRGDRVKLKQILCNLVSNSMKFT-SEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
V GD++++KQIL NL+ N++KFT EG IS+ I++ L
Sbjct: 289 VWGDKLRIKQILINLLGNAVKFTPKEGRISL-------------------FITRTL---- 325
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
+ + EF V D G G+ ++Q+ +F F Q + G
Sbjct: 326 -----------------ETDSSITLEFSVSDDGIGMTPEQQHKLFNAFQQADSSIAGRFG 368
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE---RPDT 676
G GLGL I Q++V+LM G+I++ K G FRF++ L R+ PDT
Sbjct: 369 GTGLGLAISQNLVNLMGGQISVESK--LNEGTTFRFSLTLEKAEARQADPEPDT 420
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 936 SISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNG 995
S++ + +Q + D K SE L GK L+ ED I V +L +F NG
Sbjct: 403 SLTLEKAEARQADPEPDTKPSELDLTGKHILLAEDVEINRIVLMELLSDTHVEFTEAENG 462
Query: 996 KEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIAL 1055
K A D S +D I MD MP+M+G+EAT++IR + IPIIAL
Sbjct: 463 KIAVDAFSAAQSGY--------FDLIFMDIHMPIMDGYEATQIIRTMDRSDAASIPIIAL 514
Query: 1056 TAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+A+A K + AGM+ H KP+ D +
Sbjct: 515 SANAYREDIDKALAAGMNGHTAKPIDLDAI 544
>gi|392982798|ref|YP_006481385.1| sensor/response regulator hybrid [Pseudomonas aeruginosa DK2]
gi|419754930|ref|ZP_14281288.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PADK2_CF510]
gi|384398748|gb|EIE45153.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PADK2_CF510]
gi|392318303|gb|AFM63683.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
DK2]
Length = 918
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----GGRER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTQFSVDLPLSP 635
Query: 668 VCE 670
+
Sbjct: 636 ALD 638
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 19/187 (10%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSL--------QQVAAQSDGKCSEKPLNGKKFL 966
QHC D P L+ ++ + +L +Q S+ E+P + L
Sbjct: 734 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERP-DAPCIL 792
Query: 967 VVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026
V ED+ + V L K G + NG+ A D + + ++ I+MD E
Sbjct: 793 VAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGE 843
Query: 1027 MPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
MP M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 844 MPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAEL 903
Query: 1086 LDVVKSI 1092
++ +
Sbjct: 904 YATLERL 910
>gi|451819248|ref|YP_007455449.1| multi-sensor hybrid histidine kinase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451785227|gb|AGF56195.1| multi-sensor hybrid histidine kinase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 946
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 145/298 (48%), Gaps = 46/298 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A + AE + K+ LA SH++R + ++G + L E + T E + I+ S+
Sbjct: 435 AKDIAEEANRAKSEFLANMSHEIRTPMNGVVGFLSLL-EKTDLNTSQREFIDTIKVSSET 493
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N ++++SKIEAGKMEL FN+ ++E V ++ +K + + L D +
Sbjct: 494 LLAVINDILDISKIEAGKMELENIPFNITTIIERTVFLFNGRAKEKEIKLNL-SIDSKI- 551
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++GD KL+Q++ NL+SN++KFT+EG I V A++ ++
Sbjct: 552 -PDFLKGDSTKLRQVISNLISNAVKFTNEGEILVEASLVNQT------------------ 592
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
++D + F+V DTG G+ + + +F+ F Q ++
Sbjct: 593 -----------EVDT-----------EIYFKVRDTGIGMNEHEMAKLFKPFSQADSSSTR 630
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
G GLGL I + +V LM G I + K+ + G F FN++L E E + +ED
Sbjct: 631 KYGGTGLGLAICKKIVELMGGTIGVVSKK--DEGTTFYFNLILNNPSEEEIFNLKQED 686
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 12/127 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED+ I + L +G ++ NG EA + CKI Y I M
Sbjct: 701 RILLVEDNEINRRFFINSLKLIGLSCDIAVNGLEAL-NACKIKD----------YHIIFM 749
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
DC+MP M+G+EATR IR+ E H IIA+TAH+M G A++ AGMD +L+KP +
Sbjct: 750 DCQMPEMDGYEATRKIRQLEAGSK-HTTIIAMTAHSMKGDANECFKAGMDDYLSKPFVFE 808
Query: 1084 KLLDVVK 1090
+++++++
Sbjct: 809 QMVEMLQ 815
>gi|158335032|ref|YP_001516204.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
gi|158305273|gb|ABW26890.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
Length = 1514
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 135/290 (46%), Gaps = 43/290 (14%)
Query: 377 LIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLI 436
L + + E A+ S K+ LA SH++R L AI+G VE+ D G E+LG+I
Sbjct: 846 LNQAQQSKEAADAASQAKSDFLAHMSHELRTPLNAILGYVEIMQRDPQLGETQTEHLGII 905
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
+ LL ++N V+EMS+IEAG++ L + F+L +LL+ + DM +G+ +
Sbjct: 906 GRSGEHLLSLINDVLEMSRIEAGQLALTQVSFDLYRLLDSLQDMLEAKAKLQGLQLYF-- 963
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
+ S V D KL+Q+L NL+ N + +T +G + ++ ++S +
Sbjct: 964 -ERSATVPQFVFADEGKLRQVLINLLGNGLNYTEKGQVLLQVDTPEQSGQPG-------- 1014
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
C Q F V DTG GI + +FE F Q
Sbjct: 1015 -RAC----------------------------QLTFAVMDTGPGIKASDVDQLFEAFTQT 1045
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
++ QEG GLGL I + V LM G+I + D G+ G FRF + +T
Sbjct: 1046 -DSGYRAQEGTGLGLPISRRFVQLMGGDIEV-DSTVGQ-GSTFRFTIPVT 1092
Score = 44.3 bits (103), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED ++ L G NG+EA L+ ++ L I M
Sbjct: 1119 RLLLVEDKWANRQLMQQWLAPFGFDIREAVNGEEA-------LAVWQEWAPHL----IWM 1167
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MPVM+G++ATR I+ Q + P IIALTA+A + G D + KP Q+
Sbjct: 1168 DMRMPVMDGYKATREIKA---QCGDNPPVIIALTANAFEEDRLYALSVGCDDFVRKPCQE 1224
Query: 1083 DKLLD 1087
+LD
Sbjct: 1225 STILD 1229
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 17/123 (13%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV +D+ + ++ L LG +V +G++ C+ YD I++
Sbjct: 1264 RILVADDNTLNQQLMVQRLVHLGYSADVVSDGQQVV-AACQTQM----------YDLILL 1312
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D +MP MNG E + +R++E P +I ++ + + +DAGM +L KP+
Sbjct: 1313 DVQMPKMNGLEVVQTLRQQE-----MCPYVIGVSGRTLPEEKQECLDAGMQDYLCKPVSL 1367
Query: 1083 DKL 1085
+ L
Sbjct: 1368 EDL 1370
>gi|254423560|ref|ZP_05037278.1| PAS fold family [Synechococcus sp. PCC 7335]
gi|196191049|gb|EDX86013.1| PAS fold family [Synechococcus sp. PCC 7335]
Length = 1070
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 130/262 (49%), Gaps = 10/262 (3%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
+A + K+ LAK SH++R L AI+G +L H + + L +I + LL
Sbjct: 556 EANTANRAKSQFLAKMSHELRTPLNAILGFTQLLHYHETLSFEQRDRLNIINRSGEHLLS 615
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N V+E S+IEAG++ L E F+L Q +E + +M + ++ +L + +
Sbjct: 616 LINDVLETSRIEAGQLRLNESCFDLHQFIESIREM---LTLRASNKNLLLKVNQTPRVPQ 672
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
+V GD +KL+Q++ NLV N++KFT+ G + +R + K I ++
Sbjct: 673 YVWGDEIKLRQVIINLVGNAIKFTNNGEVRIRVSCLSGMGKAPIAKLTEEQEEVLTEEVL 732
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
EG + E+ N +FEV DTG GI + ++IFE F Q K + E
Sbjct: 733 TNEIEG------VSITEKVSNTACIQFEVSDTGCGIKSENFDAIFEPFKQTKAGRRAY-E 785
Query: 626 GLGLGLGIVQSMVHLMKGEIAI 647
G GLGL I + LM G+I +
Sbjct: 786 GTGLGLSISRQNARLMGGDIEV 807
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 17/130 (13%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVC--RNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
+ LVVED A ++ ++L + FEVC +GKEA D L ++ D I
Sbjct: 852 RILVVEDVAENRQLLISLLTTIC--FEVCTANDGKEAVD--------LWRQWHP---DCI 898
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIP--IIALTAHAMAGVASKIVDAGMDFHLTKP 1079
+MD MP M+G+ AT+ IR E+ ++ P IIAL+A + S +V G D +++KP
Sbjct: 899 LMDLYMPRMDGYAATQQIRAEQAAIELTFPPAIIALSASVIDHFRSDLVSFGFDDYVSKP 958
Query: 1080 LQKDKLLDVV 1089
Q + +L+ +
Sbjct: 959 FQINVILEKI 968
>gi|357403818|ref|YP_004915742.1| histidine kinase [Methylomicrobium alcaliphilum 20Z]
gi|351716483|emb|CCE22143.1| putative Histidine kinase [Methylomicrobium alcaliphilum 20Z]
Length = 1150
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 156/327 (47%), Gaps = 66/327 (20%)
Query: 353 VISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAI 412
+I GL + + A+ E A L +++A +AE LA SH++R L AI
Sbjct: 370 IIWEGLVMDVTARKRSEEELAKAKLAAEVSAKAKAE--------FLANMSHEIRTPLNAI 421
Query: 413 IGLVELCHEDANPGTDLAE----NLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEF 468
IGL L + ++L E L ++ S++LLGI+N++++ SKIE+GK+++ EF
Sbjct: 422 IGLNRLVLK-----SELNEVQRDYLHKVQLSSENLLGIINNILDFSKIESGKLDVEHVEF 476
Query: 469 NLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKF 528
NL +LE + M V +K +D+++D G L C + GD ++L Q+L NL SN++KF
Sbjct: 477 NLDAVLENIGSMLEPVAAEKHLDLLIDRGLGVPL--CMI-GDSLRLIQVLTNLCSNAIKF 533
Query: 529 TSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLL 588
T +G + + +VK EG D
Sbjct: 534 TEQGEVVI--SVK---------------------------TEGDD--------------- 549
Query: 589 QFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIA 648
Q F V DTG G+ + +++ IFE F Q + H G GLGL I + +V +M GE+ +
Sbjct: 550 QLRFSVRDTGIGLSEKQKSRIFESFTQADSSTTRHFGGTGLGLTISKHLVEMMGGELGVV 609
Query: 649 DKEPGERGVCFRFNVLLTAVCERERPD 675
E G F F + L V + + D
Sbjct: 610 SAEGA--GSEFYFTLPLNVVPDSQSVD 634
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 9/130 (6%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
E + G + L+VED+ I +V L G ++ NG EA + LR+
Sbjct: 790 EAAVRGIRVLIVEDNEINQEVVRKTLESAGVVVDIVNNGLEAVNL-------LRQTADEP 842
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
Y+ ++MD +MP M+G+EAT ++RK + ++D +PIIA+TAH + + + GM H+
Sbjct: 843 IYNAVLMDLQMPEMDGYEATTILRK-DSRFD-KLPIIAMTAHTIESDRQQCLATGMQDHI 900
Query: 1077 TKPLQKDKLL 1086
KP+ ++L
Sbjct: 901 GKPIDPEQLF 910
>gi|152985475|ref|YP_001347049.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PA7]
gi|150960633|gb|ABR82658.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
PA7]
Length = 918
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 173/371 (46%), Gaps = 72/371 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F +GV+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSGVVKVGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAACVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK++L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGNALMSVINDILDYARIESGKLQLERIDFDLEELLSDTLALFGAQAREKRLRLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+ N++KFT+EGH+++R V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLTNLLGNALKFTAEGHVALR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----AGRER------LLYSVSDSGIGISAQAQA 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG+ RF+V L
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPGK---GTRFSVDLPL 633
Query: 668 VCERERPDTDE 678
+ D DE
Sbjct: 634 SPALDSGDADE 644
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 17/186 (9%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKC---SEKPLNGKK----FLV 967
QHC D P L+ ++++ ++L ++ + + SE P ++ LV
Sbjct: 734 QHCHDLPPHEGLRLLALAQPVTVNALRAALLELYRERRRQLRGNSEAPREPERDTPCILV 793
Query: 968 VEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM 1027
ED+ + V L K G + NG+ A D + + ++ I+MD EM
Sbjct: 794 AEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGEM 844
Query: 1028 PVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
P M+G+EATRLIR+EE D +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 845 PEMDGFEATRLIRREERARDWPRVPIVALTAHILDEHRQAGIEAGMDAYLGKPVDRTELY 904
Query: 1087 DVVKSI 1092
++ +
Sbjct: 905 ATLERL 910
>gi|170691461|ref|ZP_02882626.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
gi|170143666|gb|EDT11829.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
Length = 1490
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 141/292 (48%), Gaps = 48/292 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A + AE S K A SH++R + ++GLVE+ E +D E LG+I +
Sbjct: 836 RARDLAEAASRAKDDFFAMMSHEIRTPMNGVLGLVEVL-ERTPLNSDQGEMLGMIHESAG 894
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL IL+ +++ SKIEAG++ + E +L ++++ V + +KG+ V +D
Sbjct: 895 ALLQILDDLLDYSKIEAGRLTIEAEPIDLREMVDNAVGLLAGRAHEKGLKVRVDIASDV- 953
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+ +RGD V+L+Q+L NL+ N++KFT EGH+ VR A
Sbjct: 954 --AATLRGDSVRLRQVLFNLLGNAIKFTPEGHVDVRVA---------------------- 989
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
+V + L E V+DTG GIP + Q +FE FVQ + +
Sbjct: 990 ------------------AVAQTGELQTIEVIVEDTGIGIPAELQAKLFEPFVQAESSTT 1031
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL I + ++ LM G +A+ D EPG RG R V L+ E +R
Sbjct: 1032 RRFGGTGLGLTICRKLIQLMDGSLAL-DSEPG-RGT--RMTVRLSMPVETQR 1079
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
+G+ LV ED + ++ L LG +V +G EA + + Y
Sbjct: 1226 SGRLILVAEDHPVNQELIRHQLALLGFACDVANDGAEALTAL-----------EHTSYGC 1274
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDV--HIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
++ DC MP ++G+E T+ IR+ E+++ V +PI+ +TA+ + +AGMD L K
Sbjct: 1275 LITDCHMPNVSGYELTQRIREREQEHGVSHRLPILGVTANTAPEDLNLCREAGMDESLIK 1334
Query: 1079 P 1079
P
Sbjct: 1335 P 1335
>gi|218890338|ref|YP_002439202.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
LESB58]
gi|420138641|ref|ZP_14646539.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CIG1]
gi|421159027|ref|ZP_15618208.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
25324]
gi|218770561|emb|CAW26326.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
LESB58]
gi|403248604|gb|EJY62162.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CIG1]
gi|404548738|gb|EKA57680.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
25324]
Length = 918
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----GGRER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTRFSVDLPLSP 635
Query: 668 VCE 670
+
Sbjct: 636 ALD 638
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 19/187 (10%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSL--------QQVAAQSDGKCSEKPLNGKKFL 966
QHC D P L+ ++ + +L +Q S+ E+P + L
Sbjct: 734 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERP-DAPCIL 792
Query: 967 VVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026
V ED+ + V L K G + NG+ A D + + ++ I+MD E
Sbjct: 793 VAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGE 843
Query: 1027 MPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
MP M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 844 MPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAEL 903
Query: 1086 LDVVKSI 1092
++ +
Sbjct: 904 YATLERL 910
>gi|310827685|ref|YP_003960042.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308739419|gb|ADO37079.1| hypothetical protein ELI_2096 [Eubacterium limosum KIST612]
Length = 856
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 166/364 (45%), Gaps = 61/364 (16%)
Query: 304 KYIFYCSTLQIAGVQSVYVLAYDS-NGLGSLVSRNNKLS---LMLLVLMFIAGVISLGLF 359
+Y +Y + G + YD+ N S +SR L+ +ML VLM +A F
Sbjct: 261 EYAYYTPIPE-TGWYVFTSMGYDTVNSQVSSLSRFMMLAACGVMLSVLMILAAS-----F 314
Query: 360 IILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC 419
++ K + + L M E+AER S K+ L++ SH++R + I+G+ E+
Sbjct: 315 LLYNRKERQIQRLL-------MAEKEKAERASQAKSDFLSQMSHEIRTPMNGIVGMTEVG 367
Query: 420 HEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVD 479
+ + L I ++ LL ++N +++MSKIE+GK+EL EE F+ QL + +
Sbjct: 368 RRYTHNPARIENCLDKISLSTQHLLSLVNDILDMSKIESGKIELHEESFDFGQLFKALTT 427
Query: 480 MYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAA 539
++Y ++G++ + +G++ + GD ++L QIL NL+SN+MKFT +G
Sbjct: 428 VFYTQARERGIEYNV-YVNGAL--EDELVGDALRLNQILTNLLSNAMKFTPKGG------ 478
Query: 540 VKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGK 599
C++ + R + FEV D+G
Sbjct: 479 ------------------KVCMTA---------------EEIRRGEDRFWIGFEVRDSGC 505
Query: 600 GIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
GI K+ IFE F Q G GLGL I + V +M G I++ + + G G CF
Sbjct: 506 GIAKENLGRIFEVFTQEDSGVARKYGGTGLGLPITKRFVEMMGGSISV-ESQVGS-GSCF 563
Query: 660 RFNV 663
R +
Sbjct: 564 RVEI 567
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
E L K L+VED+ + +++ +L A+ + NG+EA + + EG
Sbjct: 718 EDSLKDKNVLIVEDNPLNMEIAEELLKIADARVQGAANGQEAVEAFTR-----SPEGF-- 770
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
+D I+MD +MPVM+G ATR+IR +PI+A+TA+A K +D+GMD H+
Sbjct: 771 -FDLILMDMQMPVMDGAAATRVIRALNRSDADAVPIVAMTANAFQEDIRKCLDSGMDAHI 829
Query: 1077 TKPLQKDKLL 1086
+KP + +L
Sbjct: 830 SKPFMLEDIL 839
>gi|359462399|ref|ZP_09250962.1| two-component hybrid sensor and regulator [Acaryochloris sp. CCMEE
5410]
Length = 929
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 146/293 (49%), Gaps = 27/293 (9%)
Query: 375 AALIKQMNAT-EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENL 433
A L+ Q+ + E+AE + K+ LA SH++R L AI+G +L + D N + L
Sbjct: 401 AELMYQLQKSKEKAEAANRAKSAFLANMSHELRTPLNAILGFSQLLNRDKNLTPKQKQTL 460
Query: 434 GLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV 493
I LL ++N V+EMSKIEAG++ L + +L LL+ + +M+ KG+ ++
Sbjct: 461 TSINRSGSHLLNLINDVLEMSKIEAGRVSLNFKNCDLMSLLDSIQEMFLLKVESKGLKLM 520
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
+D ++R D +L+Q+L N+++N++KFT +G +++ K + Q +I+ +
Sbjct: 521 VDKAPDL---PPYIRTDESRLRQVLINVLTNALKFTEQGSVAL------KVYTQPLISPD 571
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
DD +A+ + E PN+ +V+DTG GI + ++FE F
Sbjct: 572 L--------------VPTHDDGNAV-AEENQPNIY-LCIDVEDTGVGISASEMGNLFETF 615
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
Q EG GLGL I Q + LM G I I KE V + V+ T
Sbjct: 616 TQAS-AGRNSTEGAGLGLAICQHCIELMGGNILIDSKEGQGTTVQIKVPVMAT 667
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 32/147 (21%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED+ ++ ++ +G + + NG++A C + I+M
Sbjct: 691 RMLVVEDNPENAQIVIDLMTSVGFEVQSVVNGQQAV--AC---------WQTWQPHVILM 739
Query: 1024 DCEMPVMNGWEATRLIRKEEEQ--YDVHIP-------------------IIALTAHAMAG 1062
D +MPVMNG+EAT+ IR E Q Y +H+ IIALTA
Sbjct: 740 DWQMPVMNGYEATQTIRTLESQAGYTIHLQASQDSSSSPSVLFPLNNTIIIALTASVFED 799
Query: 1063 VASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ +AG D L KP Q+ L +++
Sbjct: 800 TKQECFEAGCDDFLRKPYQQSVLFEML 826
>gi|83855337|ref|ZP_00948867.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
NAS-14.1]
gi|83843180|gb|EAP82347.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
NAS-14.1]
Length = 713
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 138/291 (47%), Gaps = 49/291 (16%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
K ++A AE + K+ LAK SH++R + I+G+ E+ D D + I+T
Sbjct: 201 KLVDARATAEAANSAKSLFLAKMSHEIRTPMNGIVGMTEVLG-DTALTQDQRLYVDTIKT 259
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
++ LL I+N V++ S+IEA ++ + F+L ++ +EV+ + + ++KG+D+ L D
Sbjct: 260 SAEALLVIINDVLDFSRIEANRLSIHPAPFDLERVFQEVLLLLQPLAVQKGLDLAL---D 316
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
+ + GD +++Q+L NLV N++KFT GHI +RA
Sbjct: 317 YDLFLPRKLVGDAGRIRQVLTNLVGNAVKFTQNGHILIRAT------------------- 357
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
G D A N+L + ++DTG GI D I EF Q
Sbjct: 358 ------------GLPDAGA-------GNVL-IKISIEDTGIGIAPDMIEHIMGEFTQASS 397
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGV--CFRFNVLLTA 667
+ EG GLGL I Q +V LM GEI + E GV CF F + L A
Sbjct: 398 DPSPNAEGTGLGLAICQRLVQLMGGEIWVT----SEHGVGSCFGFELPLKA 444
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 15/143 (10%)
Query: 944 LQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVC 1003
L +V+ +P+ + L ED+ V +L +L ++ NG+EA
Sbjct: 566 LAEVSTMQPVPVGTRPM---RVLAAEDNKTNRLVLRKMLQRLNIDLQLATNGQEA----V 618
Query: 1004 KILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGV 1063
+ R D + MD MP MNG +A IR E + PI+ALTAHA+
Sbjct: 619 ALFETFRP-------DLVFMDISMPKMNGKDAAAAIRALEGEAS-SCPIVALTAHAIQDE 670
Query: 1064 ASKIVDAGMDFHLTKPLQKDKLL 1086
+I+ AG+D LTKPL+K +L+
Sbjct: 671 KERILAAGLDHFLTKPLRKAELV 693
>gi|423077063|ref|ZP_17065771.1| PAS domain S-box protein [Desulfitobacterium hafniense DP7]
gi|361852015|gb|EHL04303.1| PAS domain S-box protein [Desulfitobacterium hafniense DP7]
Length = 889
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 141/284 (49%), Gaps = 48/284 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A E+AE + K+ LA SH++R + IIG+++L + T ENL + + C+
Sbjct: 381 QAKEKAEAANRAKSEFLANMSHEIRTPINGIIGMIDLTLLTSLEKTQ-RENLKIAKNCAY 439
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
L I+N +++ SKIEAGK+ + E EFNL +++E+++ + +KG+D+ S
Sbjct: 440 SLFKIINDILDFSKIEAGKLTVEEIEFNLKEVIEQIIKTHSPEAERKGLDLAYTL---SA 496
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+ +GD ++KQ+L NL+SN++KFT G +S+ AVK+ +D+
Sbjct: 497 NLPDYYKGDPERIKQVLNNLLSNALKFTERGEVSL--AVKRLQGDEDV------------ 542
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
DL +F V DTG GI ++ Q +FEEF QV +
Sbjct: 543 -----------SDL---------------KFTVMDTGIGIAEEDQLHLFEEFNQVDGSIT 576
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + +V +M G I + E+G F V+L
Sbjct: 577 RKYGGTGLGLAISRKLVEMMGGRIWVE----SEKGKGSSFGVVL 616
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 20/133 (15%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL----PYD 1019
+ L+ ED + V + +L G + ++ +G+EA AL PYD
Sbjct: 647 RILLAEDHIVNSIVITEMLKIQGHRVDIAMDGEEAL---------------ALYHQNPYD 691
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MD ++P ++G E T+ IR E H PIIALTA+A+ G + AGMD ++ KP
Sbjct: 692 VILMDIQLPRLDGIEVTKRIRASEGAQS-HTPIIALTAYALQGDREGFLQAGMDEYIPKP 750
Query: 1080 LQKDKLLDVVKSI 1092
+ ++L+ V+ +
Sbjct: 751 VMMEELIMVLDRV 763
>gi|219670543|ref|YP_002460978.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense
DCB-2]
gi|219540803|gb|ACL22542.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense
DCB-2]
Length = 896
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 141/283 (49%), Gaps = 48/283 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+AE + K+ LA SH++R + IIG+++L + T ENL + + C+
Sbjct: 389 AKEKAEAANRAKSEFLANMSHEIRTPINGIIGMIDLTLLTSLEKTQ-RENLKIAKNCAYS 447
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
L I+N +++ SKIEAGK+ + E EFNL +++E+++ + +KG+D+ S
Sbjct: 448 LFKIINDILDFSKIEAGKLTVEEIEFNLKEVIEQIIKTHSPEAERKGLDLAYTL---SAN 504
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ +GD ++KQ+L NL+SN++KFT G +S+ AVK+ +D+
Sbjct: 505 LPDYYKGDPERIKQVLNNLLSNALKFTERGEVSL--AVKRLQGDEDV------------- 549
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
DL +F V DTG GI ++ Q +FEEF QV +
Sbjct: 550 ----------SDL---------------KFTVMDTGIGIAEEDQLHLFEEFNQVDGSITR 584
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + +V +M G I + E+G F V+L
Sbjct: 585 KYGGTGLGLAISRKLVEMMGGRIWVE----SEKGKGSSFGVVL 623
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 20/133 (15%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL----PYD 1019
+ L+ ED + V + +L G + ++ +G+EA AL PYD
Sbjct: 654 RILLAEDHIVNSIVITEMLKIQGHRVDIAMDGEEAL---------------ALYHQNPYD 698
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MD ++P ++G E T+ IR E PIIALTA+A+ G + AGMD ++ KP
Sbjct: 699 VILMDIQLPRLDGIEVTKRIRASEGAQS-RTPIIALTAYALQGDREGFLQAGMDEYIPKP 757
Query: 1080 LQKDKLLDVVKSI 1092
+ ++L+ V+ +
Sbjct: 758 VMMEELIMVLDRV 770
>gi|421179370|ref|ZP_15636962.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
gi|404547238|gb|EKA56250.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
Length = 918
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----GGRER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTRFSVDLPLSP 635
Query: 668 VCE 670
+
Sbjct: 636 ALD 638
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 19/187 (10%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSL--------QQVAAQSDGKCSEKPLNGKKFL 966
QHC D P L+ ++ + +L +Q S+ E+P + L
Sbjct: 734 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERP-DAPCIL 792
Query: 967 VVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026
V ED+ + V L K G + NG+ A D + + ++ I+MD E
Sbjct: 793 VAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGE 843
Query: 1027 MPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
MP M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 844 MPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAEL 903
Query: 1086 LDVVKSI 1092
++ +
Sbjct: 904 YATLERL 910
>gi|339500954|ref|YP_004698989.1| Hpt sensor hybrid histidine kinase [Spirochaeta caldaria DSM 7334]
gi|338835303|gb|AEJ20481.1| Hpt sensor hybrid histidine kinase [Spirochaeta caldaria DSM 7334]
Length = 837
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 155/350 (44%), Gaps = 77/350 (22%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AER K+ LA SH++R + IIG+ EL +D + +E IR +
Sbjct: 146 LEAKEIAERAIETKSQFLANMSHEIRTPIQTIIGMSELL-QDTRLDHEQSEYARQIRFSA 204
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-PCDG 499
LL ++N +++ SKIEAGK+ L +F++ +++E+ VDM KKG+++ +D P D
Sbjct: 205 DVLLSLVNDILDYSKIEAGKLALEHIDFSVEEMIEQSVDMISLEAHKKGLEIAIDIPKDA 264
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
++ H++GD + +QI+ NLV N++KFT EG ++I
Sbjct: 265 AL----HIKGDPNRFRQIIINLVKNAVKFTHEG----------------------SIIVS 298
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
C K + D +A+ V DTG GI + + +F F Q +
Sbjct: 299 C-------RKTKYHDSEAI------------TITVADTGIGIAPELRPKLFTTFFQGDPS 339
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEE 679
G GLGL I + +V M GEI++ E G G FRF + +
Sbjct: 340 TTRRFGGTGLGLAISRHLVQSMGGEISMVPNEGG--GSIFRFIIPIE------------- 384
Query: 680 DPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAG-EERRRVLKRYI 728
H HF F S K + IL + E RR+L Y+
Sbjct: 385 -------------HSHF-EFAPSYPKVQQDDRILIVDDFSETRRILANYL 420
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 23/137 (16%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLG-AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
L+VED + ++ +L K+G A +G EA + V +A P+D I M
Sbjct: 572 LLIVEDHPVNQQLFCTILEKIGFAYISTASDGIEALEKV-----------QAQPFDIIFM 620
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK- 1082
D +MP MNG+E TR +R Q + PIIA+TA A+A + ++AGM+ L KP ++
Sbjct: 621 DIQMPRMNGYETTRKLR----QRNFTGPIIAVTASALADEREQCIEAGMNDVLIKPYKRS 676
Query: 1083 ------DKLLDVVKSID 1093
DK L SID
Sbjct: 677 DIEAMCDKWLGESLSID 693
>gi|358062221|ref|ZP_09148868.1| hypothetical protein HMPREF9473_00930 [Clostridium hathewayi
WAL-18680]
gi|356699603|gb|EHI61116.1| hypothetical protein HMPREF9473_00930 [Clostridium hathewayi
WAL-18680]
Length = 576
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 156/345 (45%), Gaps = 55/345 (15%)
Query: 352 GVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAA 411
GV L LF +L + + K A E A++ + +K+ L++ SH++R L
Sbjct: 160 GVCFLLLFALLYVSGKRSK--------KAQMALELAQQANRSKSEFLSRMSHEIRTPLNG 211
Query: 412 IIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLA 471
IIG+ + A+ + L I S LL +LN V++MS+IE+GK+EL EF LA
Sbjct: 212 IIGMTAIARRSADDKDKVLNCLNKIDLSSGYLLSLLNDVLDMSRIESGKIELEYSEFRLA 271
Query: 472 QLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE 531
+ E + DM++ GV++ + + +V V GD ++L Q+L NLVSN++KFT +
Sbjct: 272 DVCERIYDMFWQKAEDSGVELKIISDELTV---SRVIGDNLRLSQVLVNLVSNALKFTPQ 328
Query: 532 GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFE 591
G +V V++ + + ++ E
Sbjct: 329 GG-TVTLHVRQTAVSEQSVS--------------------------------------LE 349
Query: 592 FEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651
FEV DTG GI ++ Q +FE F Q K G GLGL I + V +M G I++ +
Sbjct: 350 FEVSDTGVGISEEFQAHLFEPFEQEKSGTARQYGGTGLGLAISSNFVKMMGGTISV-HSQ 408
Query: 652 PGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQ---TGLH 693
PGE G F + L E E P + + P +G H
Sbjct: 409 PGE-GSRFLVQLTLQRAAETEDPSVEAASLSAKDSQPDRDLSGFH 452
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
++ L+G L+ ED+ I ++ + +L + GAK ++ +GK A D EG
Sbjct: 445 DRDLSGFHILLAEDNDINAEIITCILEESGAKVDLASDGKAALDKFAS-----SPEG--- 496
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
Y+ I MD +MPVMNG EA+ IR + IPII L+A+A + +GM+ +L
Sbjct: 497 TYNLIFMDIQMPVMNGMEASLAIRSLKRPDAGSIPIIGLSANAFREDIDMAMQSGMNAYL 556
Query: 1077 TKPLQKDKLLDVVKSI 1092
KP+ D+L + +
Sbjct: 557 AKPINLDRLYQTLNQV 572
>gi|428203644|ref|YP_007082233.1| PAS domain-containing protein [Pleurocapsa sp. PCC 7327]
gi|427981076|gb|AFY78676.1| PAS domain S-box [Pleurocapsa sp. PCC 7327]
Length = 1092
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 146/306 (47%), Gaps = 37/306 (12%)
Query: 375 AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLG 434
AAL K + A E A R K+ L+ SH++R L AI+G +L + L
Sbjct: 594 AALQKAVEAAEVANRA---KSQFLSNMSHELRTPLNAILGFTQLLARSGSLDRKQQRYLD 650
Query: 435 LIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL 494
I + LL +++ V+ +SKIEAG+ L E +F+ LL+ + M KG+ ++
Sbjct: 651 TIDRSGEHLLALIDDVLAISKIEAGRTTLNENDFDFYSLLDWLQQMLRLKAESKGLQLIF 710
Query: 495 DPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
+ ++R D KL+Q+L NL+ N++KFT G + + A+ +I
Sbjct: 711 EIASDL---PQYIRTDESKLRQVLVNLLGNAIKFTQAGSVRLGAS--------SVIGHRS 759
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
+VI G D + ++ LL FEV+DTG GI ++ S+FE FV
Sbjct: 760 SVI-------------GTKDEE---QRTKDKGLLTIHFEVEDTGPGIAAEELESLFEPFV 803
Query: 615 QVKETALGH--QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
Q T +G QEG GLGL I Q V LM G++ + + GE G F+F + + V E
Sbjct: 804 Q---TQVGRRSQEGTGLGLPISQRFVRLMGGDLTVESR-LGE-GTIFQFGIQTSPVQADE 858
Query: 673 RPDTDE 678
+ E
Sbjct: 859 LQSSQE 864
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 24/163 (14%)
Query: 929 FGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAK 988
FG + + S Q+ + Q G + +P + L+ ED ++ + +L +G +
Sbjct: 847 FGIQTSPVQADELQSSQEPSQQVIGLEAGQP--SYRILIAEDKPENRQLLAELLAPVGFE 904
Query: 989 FEVCRNGKEAFDHVCKILSDLRKEGKALPYDY----IMMDCEMPVMNGWEATRLIRKEEE 1044
NG+EA AL ++ I MD MP M+G+EAT+ I+ E
Sbjct: 905 VREAANGREAI---------------ALWQNWSPHLIWMDLRMPEMDGYEATKQIKAAGE 949
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLD 1087
+ + IIALTA A + G + + KP Q + + +
Sbjct: 950 KVPI---IIALTASAFEEDRFAALSIGFNDFVRKPFQTEVIFN 989
>gi|392373817|ref|YP_003205650.1| Sensor protein [Candidatus Methylomirabilis oxyfera]
gi|258591510|emb|CBE67811.1| putative Sensor protein [Candidatus Methylomirabilis oxyfera]
Length = 1049
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 144/292 (49%), Gaps = 58/292 (19%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
AE S K LAK SH++R L AIIG+ EL + A T+ E L ++++ S+ LL +
Sbjct: 513 AEAASRAKGEFLAKMSHEIRTPLNAIIGMTELTLDTALT-TEQREFLQVVQSSSEALLTV 571
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGS 504
+N ++++S+IEAG+M + E F+L +++E V ++ KKG+++ +DP S
Sbjct: 572 INDILDLSRIEAGQMAIEETAFHLREVVEGVAEVLSIRAQKKGLELTCYVDPALPS---- 627
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
V GD ++L+Q+L NLV N++KFT G ++++
Sbjct: 628 -RVLGDPMRLRQVLVNLVGNAIKFTERGEVTIQ--------------------------- 659
Query: 565 FFRNKEGFDDLDALHSVERN----PNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
VER P + V DTG GIP +Q IF+ F Q T
Sbjct: 660 ----------------VERTQVEAPGRIGVHISVADTGIGIPTHQQARIFDPFAQADATT 703
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
G GLGL I ++++ LM G I + + E G +G F ++++T V E E
Sbjct: 704 ARRFGGSGLGLSISKALMELMGGRIWV-ESEVG-KGSTFHCDLVVT-VAEPE 752
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHL 1076
YD I+MD +MP M+G+EATR IR E ++ V +PIIA+TAHA+AG + ++ GMD +L
Sbjct: 955 YDLILMDVQMPEMDGFEATRAIRSWEREHGVGRVPIIAMTAHAIAGYREQCLEQGMDDYL 1014
Query: 1077 TKPLQKDKLLDVV 1089
+KPL+K LLD V
Sbjct: 1015 SKPLKKQVLLDTV 1027
Score = 47.0 bits (110), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 931 AEAGASISSHCSSLQQVAAQSD-----GKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKL 985
+E G + HC + VA G+ + L G LVV+D+ + L
Sbjct: 732 SEVGKGSTFHCDLVVTVAEPEAETVRAGRETYPDLRGVAVLVVDDNPTNRLILRRTLHTW 791
Query: 986 GAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQ 1045
G E G+EA L+ LR Y +++D MP M+G R IR++
Sbjct: 792 GMTVEEAAGGEEA-------LALLRTSHAG--YQIVILDHHMPDMDGAAVARAIRQDPRL 842
Query: 1046 YDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
D I ++ L++ A++ D G+ LTKP+++ KLLD++ +
Sbjct: 843 QD--IKLVMLSSWEGLPTATR-EDLGITVVLTKPVKQSKLLDMLMGL 886
>gi|357406883|ref|YP_004918807.1| BarA [Methylomicrobium alcaliphilum 20Z]
gi|351719548|emb|CCE25224.1| putative BarA [Methylomicrobium alcaliphilum 20Z]
Length = 935
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 142/319 (44%), Gaps = 56/319 (17%)
Query: 365 KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
K +R L A K + E+A+ + K+ LA SH++R + AIIG EL ++
Sbjct: 274 KVRQRTKALEVATDKAVMLAEEAQAANRAKSQFLANMSHEIRTPMNAIIGFSELLLKE-- 331
Query: 425 PGTDLAEN--LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY 482
G + E + LI S+ LL ++N +++ SKIEAGK +L + F+L L ++ D++
Sbjct: 332 -GLNKQERHYVQLIANSSQSLLSLINDILDFSKIEAGKFDLHSDNFDLYVTLNQIADLFS 390
Query: 483 HVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKK 542
K VD+ D C GD+ L Q+L NLV N++KFT G + +R V
Sbjct: 391 AQAAAKNVDLCFDVMPRLSTWVC---GDQAHLHQVLVNLVGNALKFTHRGQVIIRVRV-- 445
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
++ N +++ E+ DTG GI
Sbjct: 446 --------------------------------------LDENALSVRYRIEIQDTGIGIE 467
Query: 603 KDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
DK IFE F Q E++ G GLGL I + +V LM G I + E GV +F
Sbjct: 468 PDKLKFIFEPFTQADESSSRLYGGSGLGLSITRQLVELMGGSIDCS----SEPGVGSQFA 523
Query: 663 VLLTAVCERERPDTDEEDP 681
V LT E+P +P
Sbjct: 524 VELTL----EKPVPAHSEP 538
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 12/144 (8%)
Query: 948 AAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILS 1007
A ++ +C L LVVED+ + ++ A+L L + +C +G EA + +
Sbjct: 666 AGENSSRCDLVKLPEAAILVVEDNLVNQELAKAILAGLECRTTLCADGAEAVEQFTE--- 722
Query: 1008 DLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE-EQYDVHIPIIALTAHAMAGVASK 1066
+D I+MDC+MPVM+G+ AT IR E EQ + PIIALTA ++G +
Sbjct: 723 --------HDFDLILMDCQMPVMDGYTATEKIRALECEQQRIKTPIIALTAATISGDRER 774
Query: 1067 IVDAGMDFHLTKPLQKDKLLDVVK 1090
GMD L+KP + L+D +K
Sbjct: 775 CATVGMDDFLSKPFIVEDLIDKLK 798
>gi|150389840|ref|YP_001319889.1| PAS/PAC sensor hybrid histidine kinase [Alkaliphilus
metalliredigens QYMF]
gi|149949702|gb|ABR48230.1| PAS/PAC sensor hybrid histidine kinase [Alkaliphilus
metalliredigens QYMF]
Length = 773
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 149/303 (49%), Gaps = 56/303 (18%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
E+AE + K+ LA SH++R + I G+V+L E + G + + + +++ + L
Sbjct: 390 EEAENANKAKSQFLANMSHEIRTPMNGIFGVVQLL-ESTDVGAEQNKYINMLKESTHTLA 448
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDGSVL 502
GI+N ++++SKIE+G +L E FNL +++ + G KG++V LDP
Sbjct: 449 GIINDILDISKIESGTFKLNNEPFNLTEMISSIYHGLLVDGNAKGLEVGYYLDPN----- 503
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ V GD +KLKQIL NL+SN++K+T +G +S R
Sbjct: 504 INPQVIGDELKLKQILTNLISNAVKYTEQGFVSFRV------------------------ 539
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
N+ FD+ H+ + +F V D+G GI + IFE+F Q +
Sbjct: 540 -----NRISFDE----HTE-------KIQFNVKDSGIGIKDGFKEKIFEDFSQEDSSTRK 583
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPR 682
+G GLGL I +++ LM+G+I+ K GE G F F CE ++ T++ + +
Sbjct: 584 KYQGTGLGLAISKNLALLMQGDISFESK-LGE-GSIFTF------TCELQKSRTEDVNTK 635
Query: 683 THN 685
H+
Sbjct: 636 NHD 638
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 72/129 (55%), Gaps = 12/129 (9%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K L VED+ + +V +++ K G ++ N KEA D IL + + I+
Sbjct: 653 KVILCVEDNIMNQEVMESIVTKKGYQYLAAYNAKEALD----ILENKK-------VHLIL 701
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MD ++P +NG+E T+ IR + +PIIA+TA+ + +K + AG++ ++ KPL
Sbjct: 702 MDIQLPDLNGFEITKSIRMAKGPMK-DVPIIAVTAYVDHKIENKCIQAGINDYMPKPLDL 760
Query: 1083 DKLLDVVKS 1091
+KL ++++S
Sbjct: 761 EKLYEMLES 769
>gi|153874606|ref|ZP_02002762.1| periplasmic sensor hybrid histidine kinase [Beggiatoa sp. PS]
gi|152068930|gb|EDN67238.1| periplasmic sensor hybrid histidine kinase [Beggiatoa sp. PS]
Length = 468
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 130/263 (49%), Gaps = 39/263 (14%)
Query: 402 SHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKM 461
SH++R L I+G ++ D + E L +I+ + LL ++N ++++SKIEAGK+
Sbjct: 2 SHELRTPLNGILGYAQILSHDRSLADKQKEGLNIIKQSGEHLLTLINDILDLSKIEAGKL 61
Query: 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNL 521
ELVE +F L L+ +V+++ +K + + + V GD +L+QIL NL
Sbjct: 62 ELVENDFYLPTFLQGIVELFRLRADEKDIAFIYEENSPQGRLPTGVHGDEKRLRQILLNL 121
Query: 522 VSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSV 581
+SN+MKFT +G ++ + + SF LD L
Sbjct: 122 LSNAMKFTFKGSVTFTVSYQSDSF-----------------------------LDGLQKG 152
Query: 582 ERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLM 641
+ +F++ D+G GI D +IFE F QV E + EG GLGL I + +V +M
Sbjct: 153 -------RLDFKIQDSGVGIATDDIANIFEPFQQVGEQS-QQIEGTGLGLPISKKLVEMM 204
Query: 642 KGEIAIADKEPGERGVCFRFNVL 664
G++ + + +G F+FN++
Sbjct: 205 GGQLNVTSQLG--KGSIFQFNIV 225
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D I++D MP MN +E + IR+ + D+ I A++A+ + + AG D L+K
Sbjct: 308 DVILIDSMMPAMNCFECVQKIRQNPKLKDIFI--FAVSANVFQQHQQECLQAGCDAFLSK 365
Query: 1079 PLQKDKLLDVVKS 1091
P+ +KLL+++ +
Sbjct: 366 PINIEKLLELLAT 378
>gi|452979733|gb|EME79495.1| hypothetical protein MYCFIDRAFT_142314, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1153
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 155/312 (49%), Gaps = 61/312 (19%)
Query: 349 FIAGVISLGLFIILIAKAAK----REMFLCAALIKQMNATEQAERKSMNKTFALAKASHD 404
++ GV+ + + I + KAA+ R+ L + + A E ++ KS LA SH+
Sbjct: 666 YLDGVVGVSMDITELKKAAEEVAARDRENSRLLAQSVAAKEASKMKSQ----FLANMSHE 721
Query: 405 VRASLAAIIGLVELCHEDANPG------TDLAENLGLIRTCSKDLLGILNSVMEMSKIEA 458
+R +A +IG+ EL +D PG + AEN I+ + LL ++N +++ SK+E+
Sbjct: 722 IRTPIAGVIGMSELLLDDG-PGDLTPEQRECAEN---IQRSANGLLTVINDILDFSKVES 777
Query: 459 GKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQIL 518
G++++ E +F+L+ ++ +V M +KG+ + D L + V GD +L+Q++
Sbjct: 778 GRLDIEEVQFDLSVVIRDVNKMLSFAAERKGLRYI---DDIQRLKNWRVLGDPGRLRQVM 834
Query: 519 CNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDAL 578
NL++NS+KFTSEG +++R +K++
Sbjct: 835 TNLLTNSIKFTSEGSVTMRVKAQKET---------------------------------- 860
Query: 579 HSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMV 638
+++ F V+DTG GI ++ + +F+ F Q + G GLGL I +++V
Sbjct: 861 ------EEMVEVHFTVEDTGIGIEEEVRRKLFKPFSQADSSTARRFGGTGLGLTISKNLV 914
Query: 639 HLMKGEIAIADK 650
LM+G I++ K
Sbjct: 915 ELMRGGISLQSK 926
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 15/157 (9%)
Query: 938 SSHCSSLQQVAAQSDGKCSEKPLNGKK-----FLVVEDDAIVLKVTSAVLGKLGAKFEVC 992
S S L V + DG E L+ + LVVED+A+ ++ + KLG
Sbjct: 990 SYPSSGLTPVNSWPDGALPELDLSADERKVTNVLVVEDNAVNQQIALKTIRKLGFPVRAV 1049
Query: 993 RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE---EQYDVH 1049
NG+EA D++ E + P D I+MD +MP+M+G++AT +R + +V
Sbjct: 1050 WNGQEALDYLATP-----SEEQPRP-DIILMDVQMPIMDGYKATYTVRNGKPFVNNPEVQ 1103
Query: 1050 -IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
IPI+A+TA A+ G K DAGMD +L+KP++K L
Sbjct: 1104 SIPIVAMTASAIQGDREKCQDAGMDDYLSKPVKKPNL 1140
>gi|89896124|ref|YP_519611.1| hypothetical protein DSY3378 [Desulfitobacterium hafniense Y51]
gi|89335572|dbj|BAE85167.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 896
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 141/284 (49%), Gaps = 48/284 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A E+AE + K+ LA SH++R + IIG+++L + T ENL + + C+
Sbjct: 388 QAKEKAEAANRAKSEFLANMSHEIRTPINGIIGMIDLTLLTSLEKTQ-RENLKIAKNCAY 446
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
L I+N +++ SKIEAGK+ + E EFNL +++E+++ + +KG+D+ S
Sbjct: 447 SLFKIINDILDFSKIEAGKLTVEEIEFNLKEVIEQIIKTHSPEAERKGLDLAYTL---SA 503
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+ +GD ++KQ+L NL+SN++KFT G +S+ AVK+ +D+
Sbjct: 504 NLPDYYKGDPERIKQVLNNLLSNALKFTERGEVSL--AVKRLQGDEDV------------ 549
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
DL +F V DTG GI ++ Q +FEEF QV +
Sbjct: 550 -----------SDL---------------KFTVMDTGIGIAEEDQLHLFEEFNQVDGSIT 583
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + +V +M G I + E+G F V+L
Sbjct: 584 RKYGGTGLGLAISRKLVEMMGGRIWVE----SEKGKGSSFGVVL 623
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 20/133 (15%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL----PYD 1019
+ L+ ED + V + +L G + ++ +G+EA AL PYD
Sbjct: 654 RILLAEDHIVNSIVITEMLKIQGHRVDIAMDGEEAL---------------ALYHQNPYD 698
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MD ++P ++G E T+ IR E H PIIALTA+A+ G + AGMD ++ KP
Sbjct: 699 VILMDIQLPRLDGIEVTKRIRASEGAQS-HTPIIALTAYALQGDREGFLQAGMDEYIPKP 757
Query: 1080 LQKDKLLDVVKSI 1092
+ ++L+ V+ +
Sbjct: 758 VMMEELIMVLDRV 770
>gi|254412527|ref|ZP_05026301.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196180837|gb|EDX75827.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 667
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 145/309 (46%), Gaps = 29/309 (9%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP--GTDLAENLGL 435
I+ A E+AE + K+ LA SH++R L I+GL EL EDA TD +L
Sbjct: 371 IEFQQAKEEAEAANRAKSAFLASMSHELRTPLNGILGLSELLREDAEDLGYTDFVPDLQQ 430
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
I LL ++ ++++SKIEAGKM L E F+++ L+ EV + IKK + L+
Sbjct: 431 IYDSGLHLLNLITDILDISKIEAGKMSLYLESFDISTLIVEVQKTVQPL-IKKKTNT-LE 488
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK---------KKSFK 546
+ LG+ + DR K+KQ+L NL+SNS KFT G I + + K+ K
Sbjct: 489 VHGAASLGTMY--ADRTKVKQLLLNLISNSAKFTENGTIVLSVTRESENEGNGNSKRDAK 546
Query: 547 QDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQ 606
++ +V+S G DD + + F V DTG G+ ++
Sbjct: 547 MLLVNGELSVVSSATLDSASMPDAGNDDQTSDWVI----------FSVSDTGIGMTPEQA 596
Query: 607 NSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
IF+ FVQ ++ G GLGL I Q +M G I + E GV F+ L
Sbjct: 597 AKIFQPFVQADDSTTKKYGGTGLGLAICQRFCEMMGGNIQV----ESEVGVGSTFSFYLP 652
Query: 667 AVCERERPD 675
A + +P+
Sbjct: 653 AKVKDPKPE 661
>gi|418591976|ref|ZP_13155856.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P2]
gi|375049177|gb|EHS41684.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P2]
Length = 919
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLHLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----GGRER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 578 TLFESFSQADSSTXRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTRFSVDLPLSP 635
Query: 668 VCE 670
+
Sbjct: 636 ALD 638
Score = 86.3 bits (212), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 18/187 (9%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSL--------QQVAAQSDGKCSEKPLNGKKFL 966
QHC D P L+ ++ + +L +Q S+ E+P + L
Sbjct: 734 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERPPDAPCIL 793
Query: 967 VVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026
V ED+ + V L K G + NG+ A D + + ++ I+MD E
Sbjct: 794 VAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGE 844
Query: 1027 MPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
MP M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 845 MPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAEL 904
Query: 1086 LDVVKSI 1092
++ +
Sbjct: 905 YATLERL 911
>gi|255581802|ref|XP_002531702.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223528678|gb|EEF30693.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 922
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 101/351 (28%), Positives = 171/351 (48%), Gaps = 56/351 (15%)
Query: 341 SLMLLVLMFIAGVISLGLFIILIAKAAK-----REMFLCAALIKQMNATEQAERKSMNKT 395
S+ +LV+ + G I F I++ AK REM + +AE + K+
Sbjct: 274 SVGVLVITLLVGHI----FYAAISRIAKVEEDYREMMMLKV---------RAEAADVAKS 320
Query: 396 FALAKASHDVRASLAAIIGLVELCHE---DANPGTDLAENLGLIRTCSKDLLGILNSVME 452
LA SH++R + ++G++++ + DAN D A+ KDL+ ++N V++
Sbjct: 321 QFLATVSHEIRTPMNGVLGMLQMLMDTDLDANQ-MDFAQT---AHASGKDLISLINEVLD 376
Query: 453 MSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVR---- 508
+KIE+G++EL F+L +L+ ++ ++ +KG+++ ++ S V
Sbjct: 377 QAKIESGRLELEAVSFDLRSVLDNILSLFSGKSNEKGIEL-------AIYVSSQVPEVVI 429
Query: 509 GDRVKLKQILCNLVSNSMKFTSE-GHI--------------SVRAAVKKKSFK--QDIIA 551
GD + +QI+ NLV NS+KFT + GHI +VR AV K+ QD+
Sbjct: 430 GDPGRFRQIITNLVGNSVKFTRDKGHIFVSVHLADEVRSTLNVRDAVLKQGLNLVQDMQN 489
Query: 552 SNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFE 611
N +S C +++ F L++ ++E + +++ V+DTG GIP D + IF
Sbjct: 490 EIDNTLSGCPVVDRWKSWANFKRLNSKDTMEES-EMIRLLVTVEDTGVGIPLDAHSRIFS 548
Query: 612 EFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
F+Q + G G+GL I + +V LM GEI EPG G F F
Sbjct: 549 PFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFV-SEPGT-GSTFSFT 597
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 28/154 (18%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L K+ LVV+D+ + +V L K GA +GKEA + L K +D
Sbjct: 778 LREKRILVVDDNKVNRRVAEGALKKYGAIVTCVESGKEALE--------LLKPPHT--FD 827
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHIPIIALTAHAMA 1061
MD MP ++G+EATR IR E Q++ H PI+A+TA +
Sbjct: 828 ACFMDRHMPELDGFEATRQIRARERQFNEQIASGEVSMEMFGNVAYWHTPILAMTADVIQ 887
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095
+ GMD ++KP ++++L + V E+
Sbjct: 888 ATNEECRKCGMDDFVSKPFEEEQLYNAVAPFFES 921
>gi|18396292|ref|NP_564276.1| histidine kinase 3 [Arabidopsis thaliana]
gi|75168994|sp|Q9C5U1.1|AHK3_ARATH RecName: Full=Histidine kinase 3; AltName: Full=Arabidopsis
histidine kinase 3; Short=AtHK3; AltName: Full=Protein
AUTHENTIC HIS-KINASE 3; AltName: Full=Protein ORESARA 12
gi|13537198|dbj|BAB40775.1| histidine kinase [Arabidopsis thaliana]
gi|332192685|gb|AEE30806.1| histidine kinase 3 [Arabidopsis thaliana]
Length = 1036
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 153/309 (49%), Gaps = 13/309 (4%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+KQ+ ++AE + K+ LA SH++R + ++G++ + D + + +
Sbjct: 437 MKQLK--KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLM-DTELDVTQQDYVRTAQ 493
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
K L+ ++N V++ +KIE+GK+EL E F+L +L++V+ ++ +KGV++ +
Sbjct: 494 ASGKALVSLINEVLDQAKIESGKLELEEVRFDLRGILDDVLSLFSSKSQQKGVELAVYIS 553
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ---DIIASNR 554
D + GD + +QIL NL+ NS+KFT +GHI V + + F+ + +S
Sbjct: 554 DRV---PDMLIGDPGRFRQILTNLMGNSIKFTEKGHIFVTVHLVDELFESIDGETASSPE 610
Query: 555 NVISKCLSKLFFRNKEGFDDL--DALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
+ +S R+ E F + S E +P + V+DTG GIP + Q+ IF
Sbjct: 611 STLSGLPVADRQRSWENFKAFSSNGHRSFEPSPPDINLIVSVEDTGVGIPVEAQSRIFTP 670
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
F+QV + G G+GL I + +V LMKGEI + + G F F + + +
Sbjct: 671 FMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFSSTP--KVGSTFTFTAVFSNGMQPA 728
Query: 673 RPDTDEEDP 681
D P
Sbjct: 729 ERKNDNNQP 737
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 28/144 (19%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G+K L+V+D+ + L+V + L K GA +G K +S L+ + +D
Sbjct: 887 LLGRKILIVDDNNVNLRVAAGALKKYGADVVCAESG-------IKAISLLKPPHE---FD 936
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHIPIIALTAHAMA 1061
MD +MP M+G+EATR IR EE+ + H+P++A+TA +
Sbjct: 937 ACFMDIQMPEMDGFEATRRIRDMEEEMNKRIKNGEALIVENGNKTSWHLPVLAMTADVIQ 996
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKL 1085
+ + GMD +++KP + ++L
Sbjct: 997 ATHEECLKCGMDGYVSKPFEAEQL 1020
>gi|428220486|ref|YP_007104656.1| PAS domain-containing protein [Synechococcus sp. PCC 7502]
gi|427993826|gb|AFY72521.1| PAS domain S-box [Synechococcus sp. PCC 7502]
Length = 807
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 142/278 (51%), Gaps = 41/278 (14%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L AI+G +L +D + + ENL +I T + LL ++N V+EM
Sbjct: 411 KSQFLANMSHELRTPLNAILGFSQLMLDDHSLTSTQLENLKIIETSGEHLLSLINDVLEM 470
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIE+GK+ L E F+L LL+ + DM KG + LD + + +V GD VK
Sbjct: 471 SKIESGKVVLNEFNFDLHGLLDRLKDMLNLKAESKG--LTLDFIQVNEIPR-YVIGDEVK 527
Query: 514 LKQILCNLVSNSMKFTSEGHISVR------AAVKKKSFKQDIIASNRNVISKCLSKLFFR 567
L Q+L NL+SN++KFT G +++ A ++ + I S+ IS L L FR
Sbjct: 528 LSQVLINLLSNALKFTQVGGVTLTVEALPIAPIQAPNQTSSQIRSD---ISNHLVHLLFR 584
Query: 568 NKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGL 627
V+DTG GI K + +IF+ F+Q ++ QEG
Sbjct: 585 --------------------------VEDTGIGISKTEIPTIFDAFIQ-SQSGRKSQEGS 617
Query: 628 GLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
GLGL I + V LM GEI A+ G+ G F F++ L
Sbjct: 618 GLGLTISRKFVELMGGEIR-AESALGQ-GSVFSFDIEL 653
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 72/127 (56%), Gaps = 12/127 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ + KV +L KLG +V +G+ ++L+ L ++ YD I+M
Sbjct: 685 RILLAEDNVVNQKVALRMLHKLGFSADVAMDGE-------QVLTALERQ----VYDLILM 733
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP ++G E T+ I + D I I+ALTAHAM + + AGM HL+KP++ +
Sbjct: 734 DVQMPNLDGIETTKCIYERFPAGDRPI-IVALTAHAMQEERERCLAAGMSNHLSKPVRLE 792
Query: 1084 KLLDVVK 1090
+L +++
Sbjct: 793 ELQRILE 799
>gi|15598658|ref|NP_252152.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
gi|418588737|ref|ZP_13152735.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
gi|421518003|ref|ZP_15964677.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
gi|9949605|gb|AAG06850.1|AE004767_1 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
PAO1]
gi|375040396|gb|EHS33172.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
gi|404347485|gb|EJZ73834.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
Length = 919
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLHLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----GGRER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTRFSVDLPLSP 635
Query: 668 VCE 670
+
Sbjct: 636 ALD 638
Score = 86.3 bits (212), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 18/187 (9%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSL--------QQVAAQSDGKCSEKPLNGKKFL 966
QHC D P L+ ++ + +L +Q S+ E+P + L
Sbjct: 734 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERPPDAPCIL 793
Query: 967 VVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026
V ED+ + V L K G + NG+ A D + + ++ I+MD E
Sbjct: 794 VAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGE 844
Query: 1027 MPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
MP M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 845 MPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAEL 904
Query: 1086 LDVVKSI 1092
++ +
Sbjct: 905 YATLERL 911
>gi|77543221|gb|ABA87031.1| putative histidine kinase [Vibrio cholerae]
Length = 1268
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 143/292 (48%), Gaps = 50/292 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL--AENLGLIRTC 439
A EQAE + K+ LA SH++R + ++GL++L AN D A+ + +
Sbjct: 525 QAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLV---ANSTLDQRQADYIEKAYSA 581
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
+K LL +LN +++ SKIEAGK+EL F+L LL+++ ++ +KG++V+ D
Sbjct: 582 AKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVLYDVTAD 641
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
H+ GD ++KQ+L NLV N++KFT +G I + +++ +S + I
Sbjct: 642 V---PEHLLGDSFRIKQVLINLVGNAIKFTDKGEILI--SIRSQSLPEGEI--------- 687
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
F + DTG GI ++QN++F F Q +
Sbjct: 688 -----------------------------NLSFSIKDTGIGITLEQQNALFSGFQQADSS 718
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER 671
G GLGL I + +V+LM GEI + + E G G F FNV++ +R
Sbjct: 719 ISRRYGGTGLGLAISKRLVNLMGGEIGV-ESEFG-CGSTFSFNVVVRNAEKR 768
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 11/129 (8%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
E PL G L+VED+ V S +L +LGA ++ +G+EA + + E A
Sbjct: 923 ELPLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALEML---------ESTAE 973
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
+D ++MD +MP M+G++ TR IRK +PIIA+TAHAM+ + + AGM H+
Sbjct: 974 HFDMVLMDIQMPGMDGYQTTREIRKLPRHQ--LLPIIAITAHAMSDDIAACLAAGMQDHI 1031
Query: 1077 TKPLQKDKL 1085
KP ++L
Sbjct: 1032 AKPFDLNEL 1040
>gi|386829361|ref|ZP_10116468.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
gi|386430245|gb|EIJ44073.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
Length = 611
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 131/273 (47%), Gaps = 51/273 (18%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
NA E AE + K+ LA SH++R L I+G ++ D+N E + +I+ +
Sbjct: 147 NAKESAETANRAKSRFLANMSHELRTPLNGILGYAQILRHDSNLTPQQQEGINIIQRSGE 206
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC---- 497
LL ++N ++++SKIEA +MEL + +F+L Q L VVD++ +K + + D
Sbjct: 207 YLLTLINDILDLSKIEADRMELYQSDFSLEQFLNNVVDLFRMRAEQKDIRFIYDSPFVRK 266
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ + L + +RGD +L+QIL NL+ N++KFT +G +
Sbjct: 267 EKNALPTA-IRGDEKRLRQILINLLGNAIKFTEKGQV----------------------- 302
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
FR ++ D + F V+DTG GIP +K +F F Q+
Sbjct: 303 -------IFRVEKEHDKIC---------------FSVEDTGIGIPSNKLEEVFLPFQQIG 340
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
+ EG GLGL I +V++M G++ I +
Sbjct: 341 -SHNQQMEGTGLGLSISNRLVNMMGGKLQITSQ 372
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 16/139 (11%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K L+V+D V +L LG + G+EA + + L D I+
Sbjct: 410 RKVLIVDDQKFNQLVCKHLLQPLGFEISHAYTGQEAIEKT-----------QELKPDVIL 458
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MD MP M+G+ T IRK D I IIA +A A + + + +G D + KP++
Sbjct: 459 MDLVMPEMDGFTTTERIRKLPIASD--ITIIAASASAFSQDQQRSLASGCDDFIAKPIKA 516
Query: 1083 DKLLDVVK---SIDETMEK 1098
D+LL +K S+ T EK
Sbjct: 517 DELLKKLKHYLSLTWTYEK 535
>gi|421166368|ref|ZP_15624628.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
700888]
gi|404538566|gb|EKA48095.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
700888]
Length = 918
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 172/371 (46%), Gaps = 72/371 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLHLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----GGRER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG+ RF+V L
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPGKDT---RFSVDLPL 633
Query: 668 VCERERPDTDE 678
E + DE
Sbjct: 634 SPALEAGEADE 644
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQ---SDGKCSE----KPLNGKKFLV 967
QHC D P L+ ++ + +L ++ + G+ SE + L+ LV
Sbjct: 734 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERLDAPCILV 793
Query: 968 VEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM 1027
ED+ + V L K G + NG+ A D + + ++ I+MD EM
Sbjct: 794 AEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGEM 844
Query: 1028 PVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
P M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 845 PEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAELY 904
Query: 1087 DVVKSI 1092
++ +
Sbjct: 905 ATLERL 910
>gi|302670459|ref|YP_003830419.1| two component system histidine kinase [Butyrivibrio proteoclasticus
B316]
gi|302394932|gb|ADL33837.1| two component system histidine kinase [Butyrivibrio proteoclasticus
B316]
Length = 1148
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 135/260 (51%), Gaps = 49/260 (18%)
Query: 390 KSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNS 449
KS N+ F+ SH++R + +I+GL E+ + ++ ++ G I+ + LL ++N
Sbjct: 204 KSQNRFFS--SMSHEIRTPINSILGLNEIILRQEDASDEIKKDAGNIQGAGRMLLALVND 261
Query: 450 VMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG--VDVVLDPCDGSVLGSCHV 507
++++SKIEAGKM+++ ++++ L+ EVV+M + +KG ++V +DP L
Sbjct: 262 ILDISKIEAGKMDIIPVNYSVSSLISEVVNMMWLRAEQKGLTLNVEIDPTLPQEL----- 316
Query: 508 RGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFR 567
GD V++KQIL NL++N++K+T+EG +++ K+DI +I
Sbjct: 317 FGDEVRIKQILVNLLNNAVKYTNEGTVTLHIE------KEDIKEEKVRII---------- 360
Query: 568 NKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGL 627
F V DTG GI +D +F+ F ++ E EG
Sbjct: 361 ------------------------FSVSDTGMGIKEDSIPYLFDAFQRIDEEKNTKIEGT 396
Query: 628 GLGLGIVQSMVHLMKGEIAI 647
GLGL IV+ +V LM GEI++
Sbjct: 397 GLGLSIVKQLVELMDGEISV 416
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D+ + L+V +L + + +G A A YD I M
Sbjct: 467 RILIVDDNEMNLEVEKKLLAGTQIRVDTADSGASALALTV-----------ATRYDIIFM 515
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D MPVMNG E + IRK+ Y+ H+P+I LTA+A + + +G D +L KP+
Sbjct: 516 DHLMPVMNGIECLQAIRKQPGGYNNHVPVIVLTANAGSENRALYSSSGFDGYLVKPV 572
>gi|107102995|ref|ZP_01366913.1| hypothetical protein PaerPA_01004064 [Pseudomonas aeruginosa PACS2]
Length = 918
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----GGRER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTQFSVDLPLSP 635
Query: 668 VCE 670
+
Sbjct: 636 ALD 638
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQ---SDGKCSE----KPLNGKKFLV 967
QHC D P L+ ++ + +L ++ + G+ SE + L+ LV
Sbjct: 734 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERLDAPCILV 793
Query: 968 VEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM 1027
ED+ + V L K G + NG+ A D + + ++ I+MD EM
Sbjct: 794 AEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGEM 844
Query: 1028 PVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
P M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 845 PEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAELY 904
Query: 1087 DVVKSI 1092
++ +
Sbjct: 905 ATLERL 910
>gi|259156506|gb|ACV96450.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Mex1]
Length = 1268
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 143/292 (48%), Gaps = 50/292 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL--AENLGLIRTC 439
A EQAE + K+ LA SH++R + ++GL++L AN D A+ + +
Sbjct: 525 QAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLV---ANSTLDQRQADYIEKAYSA 581
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
+K LL +LN +++ SKIEAGK+EL F+L LL+++ ++ +KG++V+ D
Sbjct: 582 AKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVLYDVTAD 641
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
H+ GD ++KQ+L NLV N++KFT +G I + +++ +S + I
Sbjct: 642 V---PEHLLGDSFRIKQVLINLVGNAIKFTDKGEILI--SIRSQSLPEGEI--------- 687
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
F + DTG GI ++QN++F F Q +
Sbjct: 688 -----------------------------NLSFSIKDTGIGITLEQQNALFSGFQQADSS 718
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER 671
G GLGL I + +V+LM GEI + + E G G F FNV++ +R
Sbjct: 719 ISRRYGGTGLGLAISKRLVNLMGGEIGV-ESEFG-CGSTFSFNVVVRNAEKR 768
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 11/129 (8%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
E PL G L+VED+ V S +L +LGA ++ +G+EA + + E A
Sbjct: 923 ELPLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALEML---------ESTAE 973
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
+D ++MD +MP M+G++ TR IRK +PIIA+TAHAM+ + + AGM H+
Sbjct: 974 HFDMVLMDIQMPGMDGYQTTREIRKLPRHQ--LLPIIAITAHAMSDDIAACLAAGMQDHI 1031
Query: 1077 TKPLQKDKL 1085
KP ++L
Sbjct: 1032 AKPFDLNEL 1040
>gi|427718115|ref|YP_007066109.1| integral membrane sensor signal transduction histidine kinase
[Calothrix sp. PCC 7507]
gi|427350551|gb|AFY33275.1| integral membrane sensor signal transduction histidine kinase
[Calothrix sp. PCC 7507]
Length = 556
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 150/311 (48%), Gaps = 47/311 (15%)
Query: 360 IILIAKAAKREMFLCAALIKQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVEL 418
I L+AK+ R + + K++ A E AE S K+ LA SH++R L A+IGL +L
Sbjct: 286 IGLLAKSLNRLIERVSERTKELQQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQL 345
Query: 419 CHEDA---NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLE 475
+DA + D +L I + + LL ++N ++++SKIEAGKM L E F +A L+
Sbjct: 346 LQDDAIDLSLSGDFITDLETINSAGRHLLELINDILDLSKIEAGKMTLYPETFEIATLIN 405
Query: 476 EVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHIS 535
+V + I+K +++ D LG+ + D+ +++Q+L NL+SN+ KFT+ G +
Sbjct: 406 NIV-LTVKPAIEKNANILEIDYDRQ-LGTMY--ADQTRMRQVLLNLLSNAAKFTTNGKVV 461
Query: 536 VRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVD 595
+ S K+D++ + VI+ F V
Sbjct: 462 LAVT----SEKEDLMNAPFGVIT---------------------------------FTVS 484
Query: 596 DTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGER 655
DTG G+ +Q +F+ F+Q + G GLGL I + +M GEI I +PG
Sbjct: 485 DTGIGMTPSQQQQLFQPFIQGDNSTTKKYGGTGLGLAISRHFCQMMGGEI-IVKSQPG-V 542
Query: 656 GVCFRFNVLLT 666
G F + LT
Sbjct: 543 GSTFTVRLPLT 553
>gi|334118036|ref|ZP_08492126.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333460021|gb|EGK88631.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1731
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 131/255 (51%), Gaps = 14/255 (5%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L ++G ++ D + +D E+L I+ C + LL +++ V+++
Sbjct: 1232 KSEFLANMSHELRTPLNGVLGYAQILKTDKDLSSDHQESLSNIQQCGQHLLMLIDDVLDL 1291
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEA KMEL EE N ++ + D++ +K +++ + S L SC VR D +
Sbjct: 1292 SKIEARKMELYPEELNFINFIKNIADLFQMRASQK--EILFNYEQVSPLPSC-VRVDPKR 1348
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAA-VKKKSFKQDIIASNRNVISKCLSKLFFRNKEGF 572
L+QIL NL+SN++KFT+ G ++ + V ++ + N LS N F
Sbjct: 1349 LRQILINLLSNAVKFTNSGGVTFKVGYVGTGAWSR---GQGENYEFSTLSSELKENYMRF 1405
Query: 573 DDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632
H+ + L+ F+V+DTG GI + K IF F QV EG GLGL
Sbjct: 1406 -----AHNAIAAKHALKIRFQVEDTGTGIARSKLEEIFLPFHQVGGNTF--VEGTGLGLS 1458
Query: 633 IVQSMVHLMKGEIAI 647
I Q + LM EI +
Sbjct: 1459 ISQKLAKLMGTEIHV 1473
Score = 48.1 bits (113), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
N +K L+V+D + + +L +LG + +NG+E +CK + D
Sbjct: 1513 NKRKVLIVDDHQLDRDLLCRLLLRLGFEVAEAQNGQEC---LCKTVE--------FQPDV 1561
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MD MPVM+G E R +R+ DV +IA++A + AG D L KP+
Sbjct: 1562 ILMDLRMPVMDGLETARKLRQLPAVKDV--VLIAMSASVFEATQQDSILAGYDDFLPKPI 1619
Query: 1081 QKDKLLDVVK 1090
+ + L+ ++
Sbjct: 1620 EANHFLEQLR 1629
>gi|428214611|ref|YP_007087755.1| signal transduction histidine kinase [Oscillatoria acuminata PCC
6304]
gi|428002992|gb|AFY83835.1| signal transduction histidine kinase [Oscillatoria acuminata PCC
6304]
Length = 653
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 131/258 (50%), Gaps = 21/258 (8%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANP--GTDLAENLGLIRTCSKDLLGILNSVMEMSK 455
LA SH++R L AIIG +L E+A D +L IR K+L+GI++ V+++SK
Sbjct: 389 LANMSHELRTPLNAIIGYTDLLEEEAEDLGYEDFISDLNKIRQAGKNLMGIISDVLDISK 448
Query: 456 IEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLK 515
+EAGKM L E F+++ LL EV + ++K + + C + +GS + DR K+K
Sbjct: 449 LEAGKMTLCLETFDISTLLLEVQTTVLPL-VQKNGNTLEIQCPRN-MGSMY--ADRTKVK 504
Query: 516 QILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDL 575
Q+L NL+SN+ KFT G IS+ +VKK I + V + E +
Sbjct: 505 QVLLNLLSNAAKFTESGMISM--SVKK-------IRKEKTVQDEATHSPLLSPAENSPES 555
Query: 576 DALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQ 635
+ +H+ E F V DTG GI +++ IF+ F Q + G GLGL I Q
Sbjct: 556 EQVHATEYAI------FRVKDTGIGITPEQKQHIFKAFAQADPSTTRKYGGTGLGLAIGQ 609
Query: 636 SMVHLMKGEIAIADKEPG 653
LM G+I + + G
Sbjct: 610 RFCKLMGGKIFVDSQADG 627
>gi|422306135|ref|ZP_16393320.1| sensory box protein [Vibrio cholerae CP1035(8)]
gi|408627199|gb|EKL00016.1| sensory box protein [Vibrio cholerae CP1035(8)]
Length = 1268
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 143/292 (48%), Gaps = 50/292 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL--AENLGLIRTC 439
A EQAE + K+ LA SH++R + ++GL++L AN D A+ + +
Sbjct: 525 QAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLV---ANSTLDQRQADYIEKAYSA 581
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
+K LL +LN +++ SKIEAGK+EL F+L LL+++ ++ +KG++V+ D
Sbjct: 582 AKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVLYDVTAD 641
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
H+ GD ++KQ+L NLV N++KFT +G I + +++ +S + I
Sbjct: 642 V---PEHLLGDSFRIKQVLINLVGNAIKFTDKGEILI--SIRSQSLPEGEI--------- 687
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
F + DTG GI ++QN++F F Q +
Sbjct: 688 -----------------------------NLSFSIKDTGIGITLEQQNALFSGFQQADSS 718
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER 671
G GLGL I + +V+LM GEI + + E G G F FNV++ +R
Sbjct: 719 ISRRYGGTGLGLAISKRLVNLMGGEIGV-ESEFG-CGSTFSFNVVVRNAEKR 768
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 11/129 (8%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
E PL G L+VED+ V S +L +LGA ++ +G+EA + + E A
Sbjct: 923 ELPLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALEML---------ESTAE 973
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
+D ++MD +MP M+G++ TR IRK +PIIA+TAHAM+ + + AGM H+
Sbjct: 974 HFDMVLMDIQMPGMDGYQTTREIRKLPRHQ--LLPIIAITAHAMSDDIAACLAAGMQDHI 1031
Query: 1077 TKPLQKDKL 1085
KP ++L
Sbjct: 1032 AKPFDLNEL 1040
>gi|421152710|ref|ZP_15612287.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
14886]
gi|404524906|gb|EKA35200.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
14886]
Length = 918
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----GGRER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTRFSVDLPLSP 635
Query: 668 VCE 670
+
Sbjct: 636 ALD 638
Score = 83.6 bits (205), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 17/187 (9%)
Query: 914 LQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQ---SDGKCSE----KPLNGKKFL 966
LQHC D P L+ ++ + +L ++ + G+ SE + L+ L
Sbjct: 733 LQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERLDAPCIL 792
Query: 967 VVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026
V ED+ + V L K G + NG+ A D + + ++ I+MD E
Sbjct: 793 VAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGE 843
Query: 1027 MPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
MP M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 844 MPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAEL 903
Query: 1086 LDVVKSI 1092
++ +
Sbjct: 904 YATLERL 910
>gi|158520998|ref|YP_001528868.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
Hxd3]
gi|158509824|gb|ABW66791.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
Hxd3]
Length = 1791
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 139/286 (48%), Gaps = 50/286 (17%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA SH++R + +IG+ +L + L E +R+ ++ LL I+N V++ SKIE
Sbjct: 1423 LANMSHEIRTPMNGVIGMTDLLLDTDLTEEQL-EYAESVRSSAESLLVIINDVLDFSKIE 1481
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV--DVVLDPCDGSVLGSCHVRGDRVKLK 515
AGK++L E +F+L +LL+EV D +K + DV+L S+L +GD V+L+
Sbjct: 1482 AGKLKLEEIDFDLEKLLKEVNDTMAPRARRKRIRHDVILKEEVPSLL-----KGDPVRLR 1536
Query: 516 QILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDL 575
QIL NL N++KFT G SV+ AV
Sbjct: 1537 QILFNLCENAVKFTEAG--SVKVAVS---------------------------------- 1560
Query: 576 DALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQ 635
A H + LL FEV DTG GI + +IFE F QV + G GLGL I +
Sbjct: 1561 -APHQTDTTATLL---FEVTDTGIGIAPEHHQAIFESFSQVDASTTRQYGGTGLGLAITK 1616
Query: 636 SMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDP 681
+V L+ GEI + EPG +G F F + L +++ D+ E P
Sbjct: 1617 RLVSLLDGEIGVT-SEPG-KGSTFWFTLALEKQPQQKAGDSVGETP 1660
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 15/150 (10%)
Query: 945 QQVAAQSDGKCSEKPLNGK----KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFD 1000
QQ A S G+ +G + L+VED AI +V +L K+G + NG EA
Sbjct: 1649 QQKAGDSVGETPVPAFSGSIRPLRILLVEDSAISRRVLLQMLDKMGHTATIAVNGAEA-- 1706
Query: 1001 HVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAM 1060
K+ S +D ++MD +MPVM+G AT+ I+ +++ +P+IA+TA+AM
Sbjct: 1707 --VKLFS-------RQSFDMVLMDIQMPVMDGIAATKQIKSMQKETGKKVPVIAITANAM 1757
Query: 1061 AGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
AG +I+ G+D ++ KP++ + L D ++
Sbjct: 1758 AGDRERILSQGLDDYVAKPVKMETLADAIR 1787
>gi|259156567|gb|ACV96510.1| multi-sensor hybrid histidine kinase [Vibrio fluvialis Ind1]
Length = 1252
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 143/292 (48%), Gaps = 50/292 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL--AENLGLIRTC 439
A EQAE + K+ LA SH++R + ++GL++L AN D A+ + +
Sbjct: 509 QAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLV---ANSTLDQRQADYIEKAYSA 565
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
+K LL +LN +++ SKIEAGK+EL F+L LL+++ ++ +KG++V+ D
Sbjct: 566 AKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVLYDVTAD 625
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
H+ GD ++KQ+L NLV N++KFT +G I + +++ +S + I
Sbjct: 626 V---PEHLLGDSFRIKQVLINLVGNAIKFTDKGEILI--SIRSQSLPEGEI--------- 671
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
F + DTG GI ++QN++F F Q +
Sbjct: 672 -----------------------------NLSFSIKDTGIGITLEQQNALFSGFQQADSS 702
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER 671
G GLGL I + +V+LM GEI + + E G G F FNV++ +R
Sbjct: 703 ISRRYGGTGLGLAISKRLVNLMGGEIGV-ESEFG-CGSTFSFNVVVRNAEKR 752
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 11/129 (8%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
E PL G L+VED+ V S +L +LGA ++ +G+EA + + E A
Sbjct: 907 ELPLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALEML---------ESTAE 957
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
+D ++MD +MP M+G++ TR IRK +PIIA+TAHAM+ + + AGM H+
Sbjct: 958 HFDMVLMDIQMPGMDGYQTTREIRKLPRHQ--LLPIIAITAHAMSDDIAACLAAGMQDHI 1015
Query: 1077 TKPLQKDKL 1085
KP ++L
Sbjct: 1016 AKPFDLNEL 1024
>gi|386057570|ref|YP_005974092.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
M18]
gi|347303876|gb|AEO73990.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
M18]
Length = 918
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----GGRER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTRFSVDLPLSP 635
Query: 668 VCE 670
+
Sbjct: 636 ALD 638
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQ---SDGKCSE----KPLNGKKFLV 967
QHC D P L+ ++ + +L ++ + G+ SE + L+ LV
Sbjct: 734 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERLDAPCILV 793
Query: 968 VEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM 1027
ED+ + V L K G + NG+ A D + + ++ I+MD EM
Sbjct: 794 AEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGEM 844
Query: 1028 PVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
P M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 845 PEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAELY 904
Query: 1087 DVVKSI 1092
++ +
Sbjct: 905 ATLERL 910
>gi|424942841|ref|ZP_18358604.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
NCMG1179]
gi|346059287|dbj|GAA19170.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
NCMG1179]
Length = 918
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----GGRER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTRFSVDLPLSP 635
Query: 668 VCE 670
+
Sbjct: 636 ALD 638
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQ---SDGKCSE----KPLNGKKFLV 967
QHC D P L+ ++ + +L ++ + G+ SE + L+ LV
Sbjct: 734 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERLDAPCILV 793
Query: 968 VEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM 1027
ED+ + V L K G + NG+ A D + + ++ I+MD EM
Sbjct: 794 AEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGEM 844
Query: 1028 PVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
P M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 845 PEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAELY 904
Query: 1087 DVVKSI 1092
++ +
Sbjct: 905 ATLERL 910
>gi|347359866|ref|YP_387856.2| multi-sensor hybrid histidine kinase [Desulfovibrio alaskensis G20]
gi|342906401|gb|ABB38161.2| multi-sensor hybrid histidine kinase [Desulfovibrio alaskensis G20]
Length = 970
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 143/291 (49%), Gaps = 51/291 (17%)
Query: 379 KQMNAT-EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
KQ+ T +AE S +K+ LA SH++R L AIIGL EL ++ P + ENL
Sbjct: 447 KQLEKTSREAEAASRSKSEFLANMSHEIRTPLNAIIGLTELSLQEDLP-EGVGENLRASL 505
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
+ ++ LL I+N +++++++E+GK+ L E EF+L + L V+ + H +KG+D +
Sbjct: 506 SSAEALLDIVNDILDLARVESGKLHLEEVEFSLPRFLGGVMRVMRHEAERKGLDFSM--- 562
Query: 498 DGSVLGSCHVR---GDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
LG R GD +L+QIL NL+ N++KFT EG +
Sbjct: 563 ---FLGRGLPRELMGDSGRLRQILVNLIGNAIKFTEEGGV-------------------- 599
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
NV +C+S + G+ + V+R F V DTG GIP+ IFE F
Sbjct: 600 NVAVECVS-----SSGGY-----IAGVQR------VRFTVQDTGIGIPEHLHGIIFENFR 643
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
Q + G GLGL I + +V +M G I++ E G RF V L
Sbjct: 644 QADGSITRKYGGTGLGLTISRQLVEMMGGSISLR----SEAGKGSRFEVEL 690
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 18/127 (14%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+A+ + L KLG + + +NG EA + L++ YD I M
Sbjct: 715 RILLAEDNALNRRTMILALKKLGHQADAVQNGAEAVEKAA-----LKR------YDCIFM 763
Query: 1024 DCEMPVMNGWEATRLIR-----KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D +MPVM+G +ATR IR DVHI IALTAHA+AG + V AGM +L+K
Sbjct: 764 DVQMPVMDGLDATRAIRGFTPDTAATAPDVHI--IALTAHALAGDKERFVQAGMSSYLSK 821
Query: 1079 PLQKDKL 1085
P++ + L
Sbjct: 822 PVRLEAL 828
>gi|310643958|ref|YP_003948716.1| sensor protein [Paenibacillus polymyxa SC2]
gi|309248908|gb|ADO58475.1| Sensor protein [Paenibacillus polymyxa SC2]
gi|392304678|emb|CCI71041.1| histidine kinase [Paenibacillus polymyxa M1]
Length = 556
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 141/296 (47%), Gaps = 58/296 (19%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA SH++R + +IG+++L E D E +IR + L+ ++N +++ +K+E
Sbjct: 173 LAMMSHEIRTPMNGVIGMIDLLME-TELQNDQQEYADIIRRSADALVAVINDILDFTKLE 231
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGSCHVRGDRVKLK 515
+GKME+ E F+L ++EV ++ +K +++V LD VL GD +L+
Sbjct: 232 SGKMEVEEYPFDLVSCIKEVFSLFTVEVNRKNLELVYFLDEQTPPVL-----YGDMGRLR 286
Query: 516 QILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDL 575
Q+L NLVSN++KFT +G + V A+VK
Sbjct: 287 QVLINLVSNAVKFTDQGGVYVFASVK---------------------------------- 312
Query: 576 DALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQ 635
ER+ N L EF V DTG GI K +F F Q+ + G GLGL I +
Sbjct: 313 ------ERSDNGLTVEFSVKDTGIGIDPAKVGRLFHPFSQLDSSMTRKYGGTGLGLAICK 366
Query: 636 SMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDW--PQ 689
++V +M G+I + GE+GV F F + L E +E + + +DW PQ
Sbjct: 367 TLVDMMGGDIRV--DTSGEQGVAFHFTMKLGVAKE------NELEGESSHDWEIPQ 414
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 11/126 (8%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
++P K LVV+D I K+ +L KLG +V +G++A D V
Sbjct: 414 QQEPPTRKPVLVVDDHPINQKLMVNILDKLGLASDVAADGQQALDMVTA----------N 463
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075
YDYI MD +MPVM+G E T +R E+ IIA+TA+ M G+ + ++AGM+ +
Sbjct: 464 QDYDYIFMDLQMPVMDGLECTGRVR-EQLAGRSQPAIIAMTANVMEGIQPRCIEAGMNDY 522
Query: 1076 LTKPLQ 1081
++KP++
Sbjct: 523 ISKPVK 528
>gi|152983814|ref|YP_001346548.1| two-component sensor [Pseudomonas aeruginosa PA7]
gi|150958972|gb|ABR80997.1| probable two-component sensor [Pseudomonas aeruginosa PA7]
Length = 1215
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 151/304 (49%), Gaps = 50/304 (16%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN 432
L A L + N ++A R KT LA SH++R + A+IG++EL + A+ G +
Sbjct: 692 LVAELKEAKNLADEASRA---KTTFLATMSHEIRTPMNAVIGILELALKRADTGRVDRSS 748
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
+ + +K LL ++ ++++++IE+G++ L + NL +L+E V ++ + +K + +
Sbjct: 749 IEIAYASAKSLLELIGDILDIARIESGRLGLSPKRANLRELVESVARVFEGLARQKRLSL 808
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
+LD D S+ G + D ++ KQIL NLVSN++KFT EG IS+R
Sbjct: 809 ILD-IDASINGDVLL--DAMRFKQILSNLVSNAIKFTDEGSISIR--------------- 850
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
+D H VE P+LLQ V+DTG GI Q +F
Sbjct: 851 ----------------------IDG-HLVE--PSLLQVNLCVEDTGIGISLGDQQQLFRP 885
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK-EPGER-GVCFRFNVLLTAVCE 670
F QV E + + EG GLGL I +S+ +M G + ++ G R V R V L V
Sbjct: 886 FAQV-ERNVQNTEGTGLGLVICRSLCEMMGGRLVMSSALGQGTRVDVELRLQV-LEPVSV 943
Query: 671 RERP 674
ERP
Sbjct: 944 SERP 947
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D A+ ++ L LG + NG A + L E P+D ++
Sbjct: 959 QVLVVDDHAVNRQILHQQLSFLGHDVQEAENGLAALN--------LWHEQ---PFDMVIT 1007
Query: 1024 DCEMPVMNGWEATRLIRKEE-EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
DC MP+MNG + R IR+EE E + + I+ LTA A + + AGM+ L KP+
Sbjct: 1008 DCHMPLMNGSDLARSIRQEECENNEEPVVILGLTADAQPEEIERCIQAGMNECLIKPIGL 1067
Query: 1083 DKL 1085
D L
Sbjct: 1068 DVL 1070
>gi|451971331|ref|ZP_21924551.1| putative sensory box sensor histidine kinase/response regulator
[Vibrio alginolyticus E0666]
gi|451932693|gb|EMD80367.1| putative sensory box sensor histidine kinase/response regulator
[Vibrio alginolyticus E0666]
Length = 873
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 144/285 (50%), Gaps = 53/285 (18%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
+A +++++ K+ LA SH++R + AI+G+ E+ E+ N + E L L+ +
Sbjct: 363 SALDKSKKAMQAKSEFLANMSHEIRTPMNAIMGISEILLENENR-REPRELLLLLHKSAN 421
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-PCDGS 500
+L+ I+N +++ SK+EAGK+ LVEEEF+L L+E + + KK + +++D P +
Sbjct: 422 NLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKKNLKLLVDMPLAMN 481
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ V GD+ ++ QIL NL+ N++KFT EGH+ ++
Sbjct: 482 TV----VVGDKGRINQILLNLIGNAVKFTDEGHVLLKVR--------------------- 516
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
++ GFD F V DTG GIP+++ I ++F QV +A
Sbjct: 517 ------ESEHGFD------------------FSVSDTGIGIPEERLAHIMDKFEQVDTSA 552
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
EG GLGL I + ++ + GE+ + +G CF F++ L
Sbjct: 553 TRRHEGTGLGLAISKRLISMYNGELCV--HSDFGKGSCFSFSLQL 595
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 12/126 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LV ED I + +L G K + +G EA + K L D +M D
Sbjct: 743 LLVAEDSHINRILIEKMLQDTGVKLTLAEDGVEAVELY-----------KQLSPDLVMTD 791
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
MP +G+ T+ IR+ +E PI+A +AHAM K + GMD +LTKP+QK
Sbjct: 792 ISMPNKDGFGVTKDIRELQESGAFPWCPIVAFSAHAMQEQQQKSIALGMDDYLTKPVQKS 851
Query: 1084 KLLDVV 1089
LL+++
Sbjct: 852 DLLNMI 857
>gi|411009247|ref|ZP_11385576.1| hypothetical protein AaquA_05921 [Aeromonas aquariorum AAK1]
Length = 1322
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 131/286 (45%), Gaps = 47/286 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A ++AE + K+ LA SH++R + AI+GL L D P E L I ++
Sbjct: 699 QAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKRD-TPDHTQQERLEKIDNAAQ 757
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL I+N ++++SKI+AGKM L + +F+L +L+ V + KG+ +++D D
Sbjct: 758 HLLTIINDILDLSKIDAGKMALEQSDFSLTAMLDNVSALMSEQARAKGLTIIVDIGDTPA 817
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
V GD +L+Q L N +N++KFT +G +++R + R + S L
Sbjct: 818 W----VHGDITRLRQALLNYTANAIKFTEQGSVTLR------------VRPERQLGSDYL 861
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
FEV+DTG GI ++ +F+ F Q +
Sbjct: 862 ----------------------------LRFEVEDTGIGISPEQTEKLFQAFEQADVSTT 893
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
G GLGL I + LM G++ ++ +G CF F L+A
Sbjct: 894 RKYGGTGLGLAITSRLATLMGGDVGVSSTL--GKGSCFWFTARLSA 937
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 13/130 (10%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
N + L+VED+AI +V +LG G E NG+EA V + P+D
Sbjct: 960 NHARVLLVEDNAINREVVLELLGNSGLVIETAVNGQEALARVSQ-----------HPFDL 1008
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MD +MP+M+G+ ATR IR +D +PI+ALTA A AGM+ + KP+
Sbjct: 1009 ILMDIQMPLMDGYSATRAIRALPG-WD-KVPILALTASAFEEDRRACESAGMNDFIAKPV 1066
Query: 1081 QKDKLLDVVK 1090
+L ++
Sbjct: 1067 TPTRLFAALQ 1076
>gi|313108820|ref|ZP_07794805.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
39016]
gi|386067505|ref|YP_005982809.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
NCGM2.S1]
gi|310881307|gb|EFQ39901.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
39016]
gi|348036064|dbj|BAK91424.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
NCGM2.S1]
Length = 918
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----GGRER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTRFSVDLPLSP 635
Query: 668 VCE 670
+
Sbjct: 636 ALD 638
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQ---SDGKCSE----KPLNGKKFLV 967
QHC D P L+ ++ + +L ++ + G+ SE + L+ LV
Sbjct: 734 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERLDAPCILV 793
Query: 968 VEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM 1027
ED+ + V L K G + NG+ A D + + ++ I+MD EM
Sbjct: 794 AEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGEM 844
Query: 1028 PVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
P M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 845 PEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAELY 904
Query: 1087 DVVKSI 1092
++ +
Sbjct: 905 ATLERL 910
>gi|124007456|ref|ZP_01692162.1| sensory transduction histidine kinase [Microscilla marina ATCC
23134]
gi|123987112|gb|EAY26861.1| sensory transduction histidine kinase [Microscilla marina ATCC
23134]
Length = 1248
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 147/315 (46%), Gaps = 62/315 (19%)
Query: 376 ALIKQMNATE-QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLG 434
AL+K + T +A++ S+ K+ LA SH++R L ++G V+L + N + L
Sbjct: 725 ALMKALQKTTLEAQQASVAKSEFLANMSHEIRTPLNGVVGFVDLLLQ-TNLDATQKQYLD 783
Query: 435 LIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL 494
++ LL I+N +++ SKIEAGKMEL+ + +LAQ+ + + D+ + +KG++++L
Sbjct: 784 IVSQSGNTLLEIINDILDFSKIEAGKMELLPVKVDLAQMCDGLRDLMIYQTKQKGLEMIL 843
Query: 495 DPCDGSVLGSC--HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
S+ G + D ++LKQ+L NL+SN++KFTS+G I + + +K S
Sbjct: 844 -----SLAGDLPQYAWFDEMRLKQVLTNLLSNAVKFTSKGTIEFKVTMLQKE-------S 891
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
N+ + F V DTG GI + Q IFE
Sbjct: 892 NQKAL--------------------------------LRFLVKDTGVGILPENQQKIFEA 919
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
F+Q + G GLGL I ++ LM + + +G F F++ + V E
Sbjct: 920 FLQEDTSTTKRFGGTGLGLSISNRLLALMDSRLCLESTHG--KGSTFYFDIWVNCVFEE- 976
Query: 673 RPDTDEEDPRTHNDW 687
HNDW
Sbjct: 977 -----------HNDW 980
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 14/149 (9%)
Query: 937 ISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKL--GAKFEVCRN 994
+S L + A+ ++ K + +K L+VED+ + + + + ++ KL AK + +
Sbjct: 1100 LSKITEGLAETASTNEPKKDQAGSVLQKVLIVEDNEVNMLLMNEIIAKLLPSAKILMAHS 1159
Query: 995 GKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQY-DVHIPII 1053
G+EA L ALP + I+MD +MP MNG+E TR IRK E+ I+
Sbjct: 1160 GEEA----------LAIYQTALP-ETILMDVQMPGMNGYETTRQIRKIEQTLGQQRSKIV 1208
Query: 1054 ALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
A+TA A+ + ++AGMD +TKP+ K
Sbjct: 1209 AVTAGALKEEKALCIEAGMDEFVTKPINK 1237
>gi|375310337|ref|ZP_09775608.1| histidine kinase [Paenibacillus sp. Aloe-11]
gi|375077486|gb|EHS55723.1| histidine kinase [Paenibacillus sp. Aloe-11]
Length = 412
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 134/271 (49%), Gaps = 50/271 (18%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA SH++R + +IG+++L E +D E +IR + L+ ++N +++ +K+E
Sbjct: 173 LAMMSHEIRTPMNGVIGMIDLLME-TELQSDQQEYAYIIRRSADALVAVINDILDFTKLE 231
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGSCHVRGDRVKLK 515
+GKME+ E F L ++EV ++ +K +++V LD SVL GD +L+
Sbjct: 232 SGKMEVEEYPFELVSCIKEVFSLFTVEVNRKNLELVYFLDEQMPSVL-----YGDMGRLR 286
Query: 516 QILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDL 575
Q+L NLVSN++KFT +G + V A+VK
Sbjct: 287 QVLINLVSNAIKFTDQGGVYVFASVK---------------------------------- 312
Query: 576 DALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQ 635
ER+ L EF V DTG GI K +F+ F Q+ + G GLGL I +
Sbjct: 313 ------ERSDKGLTVEFFVKDTGIGIESAKVGRLFQPFSQLDSSMTRKYGGTGLGLAICK 366
Query: 636 SMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
++VH+M G+I + GE+GV F F + L+
Sbjct: 367 TLVHMMGGDIRV--DTSGEQGVTFHFTMKLS 395
>gi|333997590|ref|YP_004530202.1| PAS domain-containing protein [Treponema primitia ZAS-2]
gi|333739964|gb|AEF85454.1| PAS domain protein [Treponema primitia ZAS-2]
Length = 976
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 140/293 (47%), Gaps = 57/293 (19%)
Query: 384 TEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT----- 438
T A+ S +K+ LA+ SH++R L AIIG+ + + A GT A NL R
Sbjct: 581 TAAAKVASQSKSEFLARMSHEIRTPLNAIIGMTHIARKSA--GTLSAANLSSERNRMVSA 638
Query: 439 ------CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
S LL ILN V++MSKIE+GK LV F++ Q LEEV D+ + +++GV
Sbjct: 639 IEEISLASSHLLDILNDVLDMSKIESGKFILVNAAFSMEQALEEVSDIIRNRCLERGVKF 698
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
V+ + L + V GDR++LKQ L NL+ N++KFTS+G +F ++
Sbjct: 699 VI---NFGALPATGVLGDRLRLKQTLINLLGNAVKFTSKG--------GSVTFSMELCG- 746
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
E + +L +F V DTG G+ +++ + +F
Sbjct: 747 -----------------------------ETDEQIL-LKFTVTDTGIGMTEEQSSRLFTA 776
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
F Q E+ G GLGL I Q +V LM G I + K GE G F F + L
Sbjct: 777 FEQADESIAARFGGTGLGLAISQRLVRLMGGNITVKSK-IGE-GSEFSFTIGL 827
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G++ L+ ED I + +L + + +G++A + S YD
Sbjct: 847 LTGRRLLLTEDIEINRIILRELLSETHVEIREAVDGQDALEQFSASDSGY--------YD 898
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I MD +MP M+G+EATR IR + + ++PI+A+TA+A K + +GM+ HL KP
Sbjct: 899 LIFMDVQMPRMDGYEATRRIRALDRRDAENVPIVAMTANAYREDIEKALASGMNDHLAKP 958
Query: 1080 L 1080
+
Sbjct: 959 I 959
>gi|158334667|ref|YP_001515839.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
gi|158304908|gb|ABW26525.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
Length = 929
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 147/293 (50%), Gaps = 27/293 (9%)
Query: 375 AALIKQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENL 433
A L+ Q+ + E+AE + K+ LA SH++R L AI+G +L + D N + L
Sbjct: 401 AELMHQLQRSKEKAEAANRAKSAFLANMSHELRTPLNAILGFSQLLNRDKNLTPKQKQTL 460
Query: 434 GLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV 493
I LL ++N V+EMSKIEAG++ L + +L LL+ + +M+ KG+ ++
Sbjct: 461 TSINRSGSHLLNLINDVLEMSKIEAGRVSLNFKNCDLMSLLDSIQEMFLLKVESKGLKLL 520
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
+ D ++ ++R D +L+Q+L N+++N++KFT +G +++ K + Q + + N
Sbjct: 521 V---DKALDLPPYIRTDESRLRQVLINVLTNALKFTEQGSVAL------KVYTQPLRSPN 571
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
DD +A+ + E PN+ +V+DTG GI + ++FE F
Sbjct: 572 L--------------VPTHDDGNAV-TEEHQPNIY-LCIDVEDTGVGISASEMGNLFETF 615
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
Q EG GLGL I Q + LM G I I KE V + V+ T
Sbjct: 616 TQAS-AGRNSTEGAGLGLAICQHCIELMGGNILIDSKEGQGTTVQIKVPVMAT 667
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 32/147 (21%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED+ ++ ++ +G + + NG++A C + I+M
Sbjct: 691 RMLVVEDNPENAQIVIDLMTSVGFEVQSVVNGQQAV--AC---------WQTWQPHVILM 739
Query: 1024 DCEMPVMNGWEATRLIRKEEEQY--DVHIP-------------------IIALTAHAMAG 1062
D +MPVMNG+EAT+ IR E Q +H+ IIALTA
Sbjct: 740 DWQMPVMNGYEATQTIRTLESQAGSTIHLQGSQDSSNSPSVLFPLNNTIIIALTASVFED 799
Query: 1063 VASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ AG D L KP Q+ L +++
Sbjct: 800 TKQECFKAGCDDFLRKPYQQSVLFEML 826
>gi|406934090|gb|EKD68506.1| hypothetical protein ACD_47C00581G0001, partial [uncultured
bacterium]
Length = 379
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 141/303 (46%), Gaps = 53/303 (17%)
Query: 365 KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
K +R L + K A + AE+ S K+ LA SH++R L A+ G EL +
Sbjct: 15 KVEERTADLASEQKKADEARDLAEKASRAKSDFLAMMSHEIRTPLNAVTGFCEL-FDKKG 73
Query: 425 PGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHV 484
+ AE LG IR+ + L ++N +++ SKIEAGK++L F ++ ++EE V +
Sbjct: 74 LSEEQAETLGYIRSSGRFLSSMINDILDFSKIEAGKLDLENAPFTVSAVIEETVSILSAA 133
Query: 485 GIKKGVDVVLDPCDG----SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAV 540
+KK + + + DG +V+G C +L Q++ NL++N++KFT EG SVRA V
Sbjct: 134 ALKKNLSLKCE-VDGRLKYTVIGDCS------RLMQVVLNLMNNAVKFTPEG--SVRARV 184
Query: 541 KKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKG 600
DI+ E N ++ FEV D G G
Sbjct: 185 -------DIL-------------------------------EETGNRVKLNFEVADDGPG 206
Query: 601 IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
I DK IF+ F Q + G GLGL I ++V LM GE + E G RG F
Sbjct: 207 IAADKLERIFKPFDQADSSTARIHGGTGLGLAIADNIVRLMGGERIFVESETG-RGSRFY 265
Query: 661 FNV 663
F +
Sbjct: 266 FTL 268
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 18/129 (13%)
Query: 928 SFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGK--KFLVVEDDAIVLKVTSAVLGKL 985
+ G E G +S + + A G +EK + K L+ ED+ + +K+ + +L +
Sbjct: 267 TLGFEKGPE-TSEMNKPESAPAHGGGSDAEKTRTRRAYKILLAEDNPMNVKLVTKLLLRA 325
Query: 986 GAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQ 1045
G + NG+EA++ C A +D ++MD +MPV+NG +ATRLIR
Sbjct: 326 GHELRTAGNGREAYEMAC-----------AEKFDAVLMDIQMPVLNGLDATRLIR----A 370
Query: 1046 YDVHIPIIA 1054
++IPIIA
Sbjct: 371 AGINIPIIA 379
>gi|215878091|gb|ACJ63457.1| putative histidine kinase [Brassica rapa subsp. pekinensis]
Length = 1070
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 154/313 (49%), Gaps = 41/313 (13%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELC--HEDANPGTDLAENLGLIRTCSKDL 443
+AE + K+ LA SH++R + I+G++ + E ++ D A+ + C K L
Sbjct: 453 RAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQT---AQVCGKAL 509
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLG 503
+ ++N V++ +KIEAGK+EL F++ +L++V+ ++ KG+++ + D
Sbjct: 510 IALINEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKV--- 566
Query: 504 SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS--------------FKQDI 549
V+GD + +QI+ NLV NS+KFT +GHI V+ + ++S +DI
Sbjct: 567 PEIVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQSKDGAESKPALNGGVASEDI 626
Query: 550 IASNRNVISKCLSKLFFRNKEGFDDLDAL-HSVERNPNLLQFEFE----------VDDTG 598
A+++ LS + +G + D+ H + L EFE ++DTG
Sbjct: 627 TAASKPSSYNTLSG--YEAADGRNSWDSFKHLLSSEELLTSSEFEASSNVRLMVSIEDTG 684
Query: 599 KGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVC 658
GIP Q +F F+Q + G G+GL I + +V LM+G+I+ + G
Sbjct: 685 IGIPLTAQGRVFMPFMQADSSTSRTYGGTGIGLSISKCLVELMRGQISFVSRP--RVGST 742
Query: 659 FRFNVLLTAVCER 671
F F TAV ER
Sbjct: 743 FWF----TAVFER 751
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 20/138 (14%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP-- 1017
L GKK LV++D+ + +V + L K GA+ +G+ A + +P
Sbjct: 928 LTGKKILVIDDNMVNRRVAAGALKKFGAEVVCAESGQVALGLL------------QIPHS 975
Query: 1018 YDYIMMDCEMPVMNGWEATRLIR------KEEEQYDVHIPIIALTAHAMAGVASKIVDAG 1071
+D MD +MP M+G+EATR IR KE+ + + H+PI+A+TA + + + +G
Sbjct: 976 FDACFMDIQMPQMDGFEATRQIRMMEKEAKEKTKLEWHLPILAMTADVIHATYEECLKSG 1035
Query: 1072 MDFHLTKPLQKDKLLDVV 1089
MD +++KP +++ L V
Sbjct: 1036 MDGYVSKPFEEENLYKSV 1053
>gi|451988206|ref|ZP_21936344.1| COG0642: Signal transduction histidine kinase [Pseudomonas
aeruginosa 18A]
gi|451754113|emb|CCQ88867.1| COG0642: Signal transduction histidine kinase [Pseudomonas
aeruginosa 18A]
Length = 918
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----GGHER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTRFSVDLPLSP 635
Query: 668 VCE 670
+
Sbjct: 636 ALD 638
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQ---SDGKCSE----KPLNGKKFLV 967
QHC D P L+ ++ + +L ++ + G+ SE + L+ LV
Sbjct: 734 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERLDAPCILV 793
Query: 968 VEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM 1027
ED+ + V L K G + NG+ A D + + ++ I+MD EM
Sbjct: 794 AEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGEM 844
Query: 1028 PVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
P M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 845 PEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAELY 904
Query: 1087 DVVKSI 1092
++ +
Sbjct: 905 ATLERL 910
>gi|428215971|ref|YP_007089115.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004352|gb|AFY85195.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1259
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 157/345 (45%), Gaps = 67/345 (19%)
Query: 377 LIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGL 435
++ QM A ++ K+ LA SH++R + ++G+ L + NP
Sbjct: 550 ILAQMKQAAVAANRA--KSEFLASMSHEIRTPMNGVLGMTGLLLATELNPQQK--HYAQT 605
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
I + ++ LL ++N +++ SK+EA +M L F L + +E VVD+ +KG+D
Sbjct: 606 IFSSAEHLLTVINDILDFSKLEAREMHLNPINFELDECIESVVDLMVAPAQEKGLD---- 661
Query: 496 PCDGSVLGSC-------HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQD 548
LG C H+ GD +L+QIL NLV+N++KFT G +S+
Sbjct: 662 ------LGICIDRNVPRHLFGDPARLRQILLNLVNNAIKFTEVGEVSIA----------- 704
Query: 549 IIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNS 608
+ A + + SK D++ +RNP L+F V DTG GI Q
Sbjct: 705 VCAVSEDATSKA---------------DSVPPAQRNPVTLRFA--VTDTGIGILPQNQTK 747
Query: 609 IFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
+F+ F QV ++ G GLGL I + +V LM+G+I + + +G F F V L
Sbjct: 748 LFQSFSQVDSSSTRQYGGTGLGLAISKQLVELMEGKIGVESEL--NQGSTFWFTVTLPV- 804
Query: 669 CERERPDTDEEDPRTHNDWP--------QTGLH----QHFASFWG 701
++ P E P T + ++ +H QHFA WG
Sbjct: 805 --QQNPTEKENSPGTTLEMESLKLLVADESAMHRQSVQHFADRWG 847
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 14/128 (10%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHV-CKILSDLRKEGKALP 1017
P+ K L+ ED I +V L LG + NG EA D + C+
Sbjct: 975 PVCPLKILIAEDHEINQQVIVFQLNTLGYHADCVNNGLEALDRLACE------------D 1022
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
YD + MDC+MP +G+E TR +R+ E H +IALTAHA+ K ++AGMD +L+
Sbjct: 1023 YDLVFMDCQMPQKDGYEVTRELRQSEGNRR-HTIVIALTAHALNSDRQKCLEAGMDDYLS 1081
Query: 1078 KPLQKDKL 1085
KP+ ++L
Sbjct: 1082 KPVLLEQL 1089
>gi|332141097|ref|YP_004426835.1| putative sensor protein [Alteromonas macleodii str. 'Deep ecotype']
gi|327551119|gb|AEA97837.1| putative sensor protein [Alteromonas macleodii str. 'Deep ecotype']
Length = 1236
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 136/298 (45%), Gaps = 52/298 (17%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENL-GLIRTC 439
M ATE+A + S K+ ++ SH++R L ++G + L P D AE L ++
Sbjct: 500 MKATEEARKASSVKSSFISNISHEMRTPLNGVVGSLSLLKR--QPLNDKAEQLVSMMEIS 557
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
+L ++N V+++SKIEAGK+++ + F L+E + ++ KG+++++D
Sbjct: 558 CNNLSVLINDVLDLSKIEAGKLDINHQLFEPLTLIESLAKVFAVKAATKGLELIVDTTG- 616
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
L + DR +L Q+L NL++N++KFT +GHI + AA+
Sbjct: 617 --LPRVEINSDRHRLNQVLSNLLNNAIKFTEKGHIQLNAAL------------------- 655
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
E + L Q F V DTG GI + Q +F F Q +
Sbjct: 656 ---------------------YENDAGLQQLHFSVSDTGVGIAPESQPKLFTAFTQADAS 694
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTD 677
G GLGL I + + L+ G+I K + G F F V LT + PDT+
Sbjct: 695 VATQYGGTGLGLSICKQLTQLLGGDITF--KSVVDVGSTFSFYVTLT----EKTPDTE 746
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 86/157 (54%), Gaps = 12/157 (7%)
Query: 943 SLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHV 1002
+ + V SD + S + N L+V+D+ I +V VL L K C +G+E V
Sbjct: 901 AFETVKQTSDPQLSIEDAN---LLIVDDNLINREVAKGVLESLPGKMFTCCDGEE----V 953
Query: 1003 CKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMA 1061
L K+G+ + I+MDC+MP M+G+E TR IR+ + ++PIIA+TA+AM
Sbjct: 954 IAFLQKCEKKGRRI--HSILMDCQMPNMDGYETTRAIREGKAGPLHANVPIIAMTANAML 1011
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLDVVKS--IDETM 1096
G K ++AGMD TKP+ D L+ VK I +TM
Sbjct: 1012 GEKEKCLEAGMDDFTTKPVIADVLIPKVKQWLIHQTM 1048
>gi|225571388|ref|ZP_03780384.1| hypothetical protein CLOHYLEM_07486 [Clostridium hylemonae DSM
15053]
gi|225159864|gb|EEG72483.1| hypothetical protein CLOHYLEM_07486 [Clostridium hylemonae DSM
15053]
Length = 976
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 157/333 (47%), Gaps = 55/333 (16%)
Query: 345 LVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHD 404
L+ + I GV+ L + I+++ A R ++ N+ +AE+++ K L++ SH+
Sbjct: 549 LMFVVICGVVFLLIVILILVMARYR-----IHAVRMQNSLAKAEKENRAKGEFLSRMSHE 603
Query: 405 VRASLAAIIGLVEL-CHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMEL 463
+R + AI+GL +L C D P T + NL IR+ S+ LLG+++ +++MS+IE M +
Sbjct: 604 IRTPMNAIVGLSDLTCMMDDVPET-VRVNLSKIRSSSRYLLGLISDILDMSRIEQDMMTI 662
Query: 464 VEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVS 523
V E F++ Q++ E+ M ++ ++ LD + S + GD V+LKQ+L NL+S
Sbjct: 663 VREPFSIGQVMNELESMMTAEAGRRELEFKLD----LRIKSDRLIGDAVRLKQVLMNLIS 718
Query: 524 NSMKFTSE-GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVE 582
N+ KFTS G I V + S ++ +
Sbjct: 719 NAFKFTSAGGRIRVDVTETEASAEEAV--------------------------------- 745
Query: 583 RNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMK 642
F F V D G GI + Q IFE F QV T +G GLGL I +++V LM
Sbjct: 746 -------FCFRVADNGIGISEKDQERIFESFEQVG-TNYSKSQGTGLGLAISKNIVELMG 797
Query: 643 GEIAIADKEPGERGVCFRFNVLLTAVCERERPD 675
G++ + K +G F F E D
Sbjct: 798 GKLEL--KSEIGKGSEFYFTAAFPTAASEEVHD 828
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 12/126 (9%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY--IMM 1023
L+ ED+ + ++ +L GA RNG++A K+ D + P ++ I+M
Sbjct: 846 LLAEDNDLNAEIAEELLEMQGAAVRRARNGRDA----VKMFED------SAPGEFHAILM 895
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MPVM+G EA R+IR + + IP+IA+TA+ +AGMD +TKP+ +
Sbjct: 896 DIQMPVMDGLEACRVIRGMKREDAAVIPVIAMTANTFKEDVDMAAEAGMDGFVTKPVDVE 955
Query: 1084 KLLDVV 1089
L V+
Sbjct: 956 YLYQVL 961
>gi|428772434|ref|YP_007164222.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
gi|428686713|gb|AFZ46573.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
Length = 996
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 131/268 (48%), Gaps = 42/268 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
T+QA ++ K+ LAK SH++R L AI+G ++ + D + E LG+I +
Sbjct: 518 TTKQANAANLAKSQFLAKMSHELRTPLNAILGFTQMMNRDCSVSEVQKEYLGIINRSGEH 577
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V+EMS+IEAG++ L FNL L++ V ++ + IK + + V
Sbjct: 578 LLSLINDVLEMSRIEAGQITLNHSCFNLYDLIKSVREL---LTIKSHSKGLCFTVEQDVE 634
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++ GD KL+QI+ NLV N++KFT EG++ D+I S
Sbjct: 635 LPQYLEGDESKLRQIIVNLVGNAIKFTEEGNV-------------DLIIS---------- 671
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
L S +N ++ EV DTG GI + +IFE F Q + ++
Sbjct: 672 ---------------LLSYSKNSKNVELLIEVKDTGIGIDNENLETIFEPFKQT-DNSIH 715
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADK 650
+EG GLGL I + LM G+I + K
Sbjct: 716 SKEGTGLGLSISRQFARLMDGDIIVRSK 743
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 20/154 (12%)
Query: 939 SHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEA 998
+H + +Q+ SD + P+ + LVVED + +L +G + NGKEA
Sbjct: 763 THKTDAKQIIGLSDSQ----PI--YRILVVEDVRDNRLLMEKMLDSVGFDVKTAENGKEA 816
Query: 999 FDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE---QYDVHIPIIAL 1055
K DL I MD MPVM+G+EA+R IR E + +PIIAL
Sbjct: 817 IALWEKWQPDL-----------IWMDMRMPVMDGYEASRHIRTREAIQGKKRKSVPIIAL 865
Query: 1056 TAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
TA A I++ G + ++KP Q+ + +++
Sbjct: 866 TATAFDEERKAILEVGCNDFVSKPFQEKDIFEIM 899
>gi|383757736|ref|YP_005436721.1| integral membrane sensor hybrid histidine kinase [Rubrivivax
gelatinosus IL144]
gi|381378405|dbj|BAL95222.1| integral membrane sensor hybrid histidine kinase [Rubrivivax
gelatinosus IL144]
Length = 759
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 153/337 (45%), Gaps = 57/337 (16%)
Query: 331 GSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERK 390
G L R ++ + ++ + G ++ + +++ AK ++Q N EQ +
Sbjct: 177 GLLAERESQSARSAMLAQLLIGGAAIAMLAVVLFSWAK---------LEQRN--EQLAQA 225
Query: 391 SMNKTFALAKASHDVRASLAAIIGLVELCHEDANP-GTDLAENLGLIRTCSKDLLGILNS 449
+ K+ +A SH++R + AIIGL +L + P + AE + IRT + L+ I+N
Sbjct: 226 NAVKSDFVASMSHEIRTPMNAIIGLTQLLERE--PLAREQAEMVQRIRTAGRSLMAIIND 283
Query: 450 VMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRG 509
++++S+IEAG+M L F L QLL ++ + + KG+ + ++ S L V G
Sbjct: 284 ILDLSRIEAGRMRLDSRSFVLGQLLIQIDSLLAPMARDKGLSLRIESALASSLQRSLV-G 342
Query: 510 DRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNK 569
D +L+Q+L NLV N++KFT G I VR V
Sbjct: 343 DPQRLEQVLVNLVGNAIKFTEHGEIVVRTRV----------------------------- 373
Query: 570 EGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629
+E++ ++ FEV DTG GI + +FE F Q Q G GL
Sbjct: 374 -----------IEQDDTQVKLRFEVQDTGIGIRPQQIRELFEPFSQADSGLARRQGGTGL 422
Query: 630 GLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
GL I + +V LM G I AD G G F F + T
Sbjct: 423 GLSISKRLVELMGGRIG-ADSVQGV-GSTFWFELGFT 457
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 13/163 (7%)
Query: 928 SFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGA 987
+F E G ++ + + V A++ L G + L V+D+ L + S L GA
Sbjct: 449 TFWFELGFTLGNGHDAQHPVYARTPMAAQGPRLQGMRLLAVDDNDTNLDLLSRALLLEGA 508
Query: 988 KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYD 1047
+ R+G++A + LR A +D ++MD +MPVM+G+EATR+IR +Q
Sbjct: 509 EATAARDGQQA-------VVTLRSNPDA--FDAVLMDLQMPVMDGYEATRVIR---QQLG 556
Query: 1048 V-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ +PII +A + + +D G L+KP+ ++L+ V+
Sbjct: 557 LNQVPIIIFSAAVLVEEQQRAMDVGATQFLSKPVDIEELVAVL 599
>gi|9802528|gb|AAF99730.1|AC004557_9 F17L21.11 [Arabidopsis thaliana]
Length = 1092
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 153/309 (49%), Gaps = 13/309 (4%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+KQ+ ++AE + K+ LA SH++R + ++G++ + D + + +
Sbjct: 469 MKQLK--KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLM-DTELDVTQQDYVRTAQ 525
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
K L+ ++N V++ +KIE+GK+EL E F+L +L++V+ ++ +KGV++ +
Sbjct: 526 ASGKALVSLINEVLDQAKIESGKLELEEVRFDLRGILDDVLSLFSSKSQQKGVELAVYIS 585
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ---DIIASNR 554
D + GD + +QIL NL+ NS+KFT +GHI V + + F+ + +S
Sbjct: 586 DRV---PDMLIGDPGRFRQILTNLMGNSIKFTEKGHIFVTVHLVDELFESIDGETASSPE 642
Query: 555 NVISKCLSKLFFRNKEGFDDL--DALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
+ +S R+ E F + S E +P + V+DTG GIP + Q+ IF
Sbjct: 643 STLSGLPVADRQRSWENFKAFSSNGHRSFEPSPPDINLIVSVEDTGVGIPVEAQSRIFTP 702
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
F+QV + G G+GL I + +V LMKGEI + + G F F + + +
Sbjct: 703 FMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFSSTP--KVGSTFTFTAVFSNGMQPA 760
Query: 673 RPDTDEEDP 681
D P
Sbjct: 761 ERKNDNNQP 769
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 28/132 (21%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G+K L+V+D+ + L+V + L K GA +G K +S L+ + +D
Sbjct: 919 LLGRKILIVDDNNVNLRVAAGALKKYGADVVCAESG-------IKAISLLKPPHE---FD 968
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHIPIIALTAHAMA 1061
MD +MP M+G+EATR IR EE+ + H+P++A+TA +
Sbjct: 969 ACFMDIQMPEMDGFEATRRIRDMEEEMNKRIKNGEALIVENGNKTSWHLPVLAMTADVIQ 1028
Query: 1062 GVASKIVDAGMD 1073
+ + GMD
Sbjct: 1029 ATHEECLKCGMD 1040
>gi|254242148|ref|ZP_04935470.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
gi|126195526|gb|EAZ59589.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
Length = 918
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----GGHER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTRFSVDLPLSP 635
Query: 668 VCE 670
+
Sbjct: 636 ALD 638
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 19/187 (10%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSL--------QQVAAQSDGKCSEKPLNGKKFL 966
QHC D P L+ ++ + +L +Q S+ E+P + L
Sbjct: 734 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERP-DAPCIL 792
Query: 967 VVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026
V ED+ + V L K G + NG+ A D + + ++ I+MD E
Sbjct: 793 VAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGE 843
Query: 1027 MPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
MP M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 844 MPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAEL 903
Query: 1086 LDVVKSI 1092
++ +
Sbjct: 904 YATLERL 910
>gi|152983945|ref|YP_001349761.1| virulence sensor protein BvgS [Pseudomonas aeruginosa PA7]
gi|150959103|gb|ABR81128.1| virulence sensor protein BvgS [Pseudomonas aeruginosa PA7]
Length = 948
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 145/299 (48%), Gaps = 45/299 (15%)
Query: 356 LGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGL 415
LG+F++L+A + ++L + + A ++AE + K+ L+ SH++R L+A+IGL
Sbjct: 541 LGVFLLLVAISIVWGLYLTRQIRRTRQAEQKAEAANQAKSIFLSTMSHELRTPLSAVIGL 600
Query: 416 VELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLE 475
EL A+ G E+L +T ++ LL ++ +V+++S+IE+GK++ + L L+E
Sbjct: 601 QELALRQADQGVLDKESLVAAQTAAQGLLLLIGNVLDLSRIESGKIDSTPKAVALKALME 660
Query: 476 EVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHIS 535
E+ + + +K + + + G V V D + LKQI NL+SN++KFT G ++
Sbjct: 661 EIAGLVDGLARQKQLTLTTE-FHGEV--DPWVTVDPLHLKQITFNLLSNAIKFTERGGVT 717
Query: 536 VRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVD 595
+R + ++S L + +V
Sbjct: 718 MRVSGTRRS-----------------------------------------QHLHVQLDVI 736
Query: 596 DTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE 654
DTG G+ + +F+ F QV+ G G GLGL I + +V M G IA+ EPG+
Sbjct: 737 DTGIGVSAEDSAKLFQPFAQVESAQAGQAHGSGLGLNITRRLVEHMGGHIAL-QSEPGK 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 15/155 (9%)
Query: 937 ISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGK 996
+++ ++L +V A D E L+ LV +D V L +LG + +G
Sbjct: 806 LAAPPATLPEVTASPDMDTRETSLS---ILVADDHPFNRIVLEGQLLQLGHAVTLSEDGL 862
Query: 997 EAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE-QYDVHIPIIAL 1055
EA++ K G+ +D ++ D MP MNG+E IR EE+ + IIAL
Sbjct: 863 EAWERW--------KTGQ---FDLLVTDGHMPKMNGFELVARIRAEEQAEGRARRRIIAL 911
Query: 1056 TAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
TA A +A + AG D L KP+ + L V++
Sbjct: 912 TASAEEAMAERFQQAGADEVLFKPVTLETLALVIR 946
>gi|254236414|ref|ZP_04929737.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
gi|126168345|gb|EAZ53856.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
Length = 918
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----GGHER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTRFSVDLPLSP 635
Query: 668 VCE 670
+
Sbjct: 636 ALD 638
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 19/187 (10%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSL--------QQVAAQSDGKCSEKPLNGKKFL 966
QHC D P L+ ++ + +L +Q S+ E+P + L
Sbjct: 734 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERP-DAPCIL 792
Query: 967 VVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026
V ED+ + V L K G + NG+ A D + + ++ I+MD E
Sbjct: 793 VAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGE 843
Query: 1027 MPVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
MP M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 844 MPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAEL 903
Query: 1086 LDVVKSI 1092
++ +
Sbjct: 904 YATLERL 910
>gi|416865626|ref|ZP_11915770.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
138244]
gi|334834369|gb|EGM13338.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
138244]
gi|453047509|gb|EME95223.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PA21_ST175]
Length = 918
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 333 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 391
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 450
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 451 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLD 510
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 511 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 551
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + V D+G GI Q
Sbjct: 552 ------------------------FDE----GGHER------LLYSVSDSGIGISAQAQK 577
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 578 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTRFSVDLPLSP 635
Query: 668 VCE 670
+
Sbjct: 636 ALD 638
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQ---SDGKCSE----KPLNGKKFLV 967
QHC D P L+ ++ + +L ++ + G+ SE + L+ LV
Sbjct: 734 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERLDAPCILV 793
Query: 968 VEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM 1027
ED+ + V L K G + NG+ A D + + ++ I+MD EM
Sbjct: 794 AEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQ---------LILMDGEM 844
Query: 1028 PVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
P M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 845 PEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAELY 904
Query: 1087 DVVKSI 1092
++ +
Sbjct: 905 ATLERL 910
>gi|449299837|gb|EMC95850.1| hypothetical protein BAUCODRAFT_71300 [Baudoinia compniacensis UAMH
10762]
Length = 2330
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 174/385 (45%), Gaps = 68/385 (17%)
Query: 363 IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED 422
+ KA K E AA +K M + + K+ LA SH++R L +IG+ EL +
Sbjct: 1806 LEKARKSENQAKAAEVKAMEMVRLKDEAAKAKSMFLANVSHELRTPLNGVIGMSELL-KA 1864
Query: 423 ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYY 482
+ AE+ IR C+ LL ++N +++ SK+EAGKM++ +L + + EVV
Sbjct: 1865 TQLNKEQAEHADSIRVCADTLLSVINDILDFSKLEAGKMQVFSVPLSLTETINEVVRALS 1924
Query: 483 HVGIKKGVDVV----LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRA 538
+ +++ + + LDP V GD V+L QIL NL+SN+ KFT++G ++VRA
Sbjct: 1925 YTNLERNLRTIEELDLDP-------QLIVMGDPVRLHQILMNLMSNAYKFTAKGSVTVRA 1977
Query: 539 AVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTG 598
K+ +QD A N +Q V DTG
Sbjct: 1978 ----KADRQD--AEN----------------------------------IQVTVSVTDTG 1997
Query: 599 KGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMV-HLMKGEIAIADKEPGERGV 657
GI +++Q +F F Q + G GLGL I ++++ ++MKG + + K PG G
Sbjct: 1998 IGISEEQQKKLFLPFSQADSSTARSYGGTGLGLSICKAIIENVMKGRVWLESK-PGV-GT 2055
Query: 658 CFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGS--QMILFI 715
F + V + +T+ P P S + + EGS I+ +
Sbjct: 2056 TVSFTLPFKKVKQSANSETNGVTPHRREADPM--------SIFTPPPEPEGSGAHQIVSL 2107
Query: 716 AGEERRRVLKRYI--ENSLNIKVTI 738
AG R + LK I +N +N K+ I
Sbjct: 2108 AGIPRDQ-LKVCIAEDNPINQKIAI 2131
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 6/133 (4%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
P + K + ED+ I K+ + KLG E +G++A D L K+GK P+
Sbjct: 2111 PRDQLKVCIAEDNPINQKIAINFVRKLGFYCEAFGDGQQAVD----ALERASKDGK--PF 2164
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
++MD +MPV++G+ ATR IRK + I +IA+TA A+ G K ++AGM+ +L K
Sbjct: 2165 HLVLMDVQMPVLDGYNATREIRKHPDPRVRDILVIAMTASAIRGDREKCLEAGMNNYLAK 2224
Query: 1079 PLQKDKLLDVVKS 1091
P++ D L +++S
Sbjct: 2225 PVRADTLKQMLES 2237
>gi|189425452|ref|YP_001952629.1| histidine kinase [Geobacter lovleyi SZ]
gi|189421711|gb|ACD96109.1| histidine kinase [Geobacter lovleyi SZ]
Length = 735
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 134/286 (46%), Gaps = 49/286 (17%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDA-NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKI 456
LA SH++R + AIIGL +L E +P L +R S LL I+N +++ SKI
Sbjct: 360 LANMSHEIRTPMNAIIGLAQLTLETRLDP--QQKSYLERLRNASTALLSIINDILDFSKI 417
Query: 457 EAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQ 516
EA K+E+ E NLA +L++ V ++ +KG+ + L+ D H+ GD ++L Q
Sbjct: 418 EAHKIEIAHLELNLADILQDGVTLFQTAAKEKGLKLSLEIADDI---PQHLIGDPLRLGQ 474
Query: 517 ILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLD 576
+L NL+SN++KFT G ++VRA + + +Q II
Sbjct: 475 VLNNLISNAVKFTERGSVTVRAELADRDDQQVII-------------------------- 508
Query: 577 ALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQS 636
V DTG GI K++ +F+ F Q + + G GLGL I ++
Sbjct: 509 --------------RILVSDTGIGIDKEQSERLFQPFTQADGSIVRRFGGTGLGLSIARN 554
Query: 637 MVHLMKGEIAIADKEPGERGVCFRFNVLLT-AVCERERPDTDEEDP 681
+V LM G I ++ ++G F F L A +PD + P
Sbjct: 555 LVELMGGSITLSSCP--DQGSTFAFTTRLDLAATVPSQPDQPQHTP 598
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
P++G + L+VED+ + V L K G K +G E + + K +
Sbjct: 604 PIHGARILLVEDNEVNQFVAREFLTKAGLKVTCAAHGGEGVEWI-----------KNSVF 652
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D ++MD +MPVM+G +AT+LIRK +PIIA+TA AM +DAGMD +L+K
Sbjct: 653 DAVLMDMQMPVMDGVQATQLIRKLPA--GRQLPIIAMTAAAMEADRQTCLDAGMDDYLSK 710
Query: 1079 PLQKDKLLD 1087
P+ ++L+
Sbjct: 711 PIVPLEILE 719
>gi|421105997|ref|ZP_15566573.1| 7TM diverse intracellular signaling [Leptospira kirschneri str. H2]
gi|410008719|gb|EKO62379.1| 7TM diverse intracellular signaling [Leptospira kirschneri str. H2]
Length = 804
Score = 116 bits (290), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 139/293 (47%), Gaps = 44/293 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 406 IQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 464
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ + + +K +D L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLFPLAKQKEIDFRL---EGK 521
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+V GD ++L+QIL NL N +KFT+ G + ++ A K S
Sbjct: 522 SEIQEYVYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKNIS---------------- 565
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
K+G + EF V D+G GIP +KQ +FE F Q +
Sbjct: 566 --------KDG----------------VSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 601
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL I + +V L G + + KE F + + ++ E E+
Sbjct: 602 ARKFGGSGLGLSITKQLVELQGGVLKLESKEGKGSKFTFTIDYDIPSILEIEK 654
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 89/213 (41%), Gaps = 33/213 (15%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCTD---PNPLNKLK 927
D +R F GS L + + K L E +G + K E + D P+ L K
Sbjct: 598 DTSTARKFGGSGLGLSITKQLVELQGGVLKLESK---EGKGSKFTFTIDYDIPSILEIEK 654
Query: 928 SFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGA 987
AE + S Q V ++S + LV ED+ + L KLG
Sbjct: 655 ILEAEKTKDLEK---SFQDVVSKS-----------ARILVAEDNETNCLLIERALKKLGY 700
Query: 988 KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYD 1047
V NG+E + + + +D I+MD MP ++G EAT+ IR + +
Sbjct: 701 DPTVVHNGREVIERM-----------QLETFDIILMDIHMPEVDGIEATKWIRSKNQNSK 749
Query: 1048 VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I IIALTA A+ K + GM+ LTKPL
Sbjct: 750 FPI-IIALTADAIESSREKYISKGMNDCLTKPL 781
>gi|365538837|ref|ZP_09364012.1| signal transduction histidine kinase-like protein [Vibrio ordalii
ATCC 33509]
Length = 1273
Score = 116 bits (290), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 147/291 (50%), Gaps = 52/291 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A EQAE + K+ LA SH++R + AI+GL+++ + N + + L ++ +K
Sbjct: 531 AKEQAEYANRAKSDFLANMSHEIRTPMNAILGLLQMTL-NTNLSSQQIDYLSKTQSAAKS 589
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD--PCDGS 500
LL +LN +++ SK+EAGK+EL + F+L LL+E + +K ++++ D P +
Sbjct: 590 LLVLLNDILDFSKVEAGKLELEQYSFSLPDLLQETAVLLSSSLQEKDIEIIYDVAPDVPT 649
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+L GD ++L+QIL NL SN++KFT+ G I +
Sbjct: 650 IL-----IGDSLRLRQILLNLASNAIKFTNSGEIKI------------------------ 680
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
++ H + N LL F+V DTG G+ ++++ IF F Q + +
Sbjct: 681 -------------SIETQHISDNNCTLL---FKVSDTGIGMTQEQKAIIFNGFSQAESSI 724
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL--TAVC 669
G GLGL IV+ +V LM+G+I++ + ++G F F + L + VC
Sbjct: 725 SRKYGGTGLGLSIVKRLVSLMQGDISVTSQ--LDKGSEFTFTITLNFSPVC 773
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 16/137 (11%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
S L+G L+VED+ V + +L + GA +G +A D + K
Sbjct: 925 SNDSLSGISILLVEDNPTNRLVATELLRQCGATIIEAEDGFKALDIL-----------KN 973
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075
+ ++MD +MP M+G+E TR IR+E + + +PI+A+TA+A + + AGM+ H
Sbjct: 974 QQFSLVLMDIQMPGMDGYETTRKIRQEMKFH--QLPILAMTANARPEDKATSLAAGMNGH 1031
Query: 1076 LTKPLQKDKLLDVVKSI 1092
+ KP + + DVVK I
Sbjct: 1032 IAKPFE---ITDVVKKI 1045
>gi|322417759|ref|YP_004196982.1| histidine kinase [Geobacter sp. M18]
gi|320124146|gb|ADW11706.1| histidine kinase [Geobacter sp. M18]
Length = 584
Score = 116 bits (290), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 132/281 (46%), Gaps = 47/281 (16%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA SH++R + ++G+ EL G + L R+ + LLGI++ ++ +SKIE
Sbjct: 201 LANMSHEIRTPMNGVLGMAELLLHTELDGKQRSYAEMLHRS-GESLLGIISDILNISKIE 259
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQI 517
AGK+E+ F+L + V++Y VG +KGV + L H GD +L+Q+
Sbjct: 260 AGKLEIERIGFDLHEATRSAVELYREVGRRKGVAIELQIAPDV---PRHAVGDPNRLRQV 316
Query: 518 LCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDA 577
L N+++N +KFT +G + +R +
Sbjct: 317 LINIINNGLKFTEKGSVRIRVTL------------------------------------- 339
Query: 578 LHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSM 637
VE++ N FE+ DTG GIP + +IFE F QV + G GLGL I + +
Sbjct: 340 ---VEKSGNGHYVGFEIKDTGIGIPGEAIGAIFELFAQVDGSTTRKYGGTGLGLAIAKQL 396
Query: 638 VHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDE 678
V LM GEI + + EPG+ G F F V L R P+ +E
Sbjct: 397 VELMGGEIEV-ESEPGQ-GSTFTFIVYLNEAPARA-PEREE 434
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 11/133 (8%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
P G + L+ ED+ + +V A++ LG +V RNG +A + + Y
Sbjct: 452 PKFGARVLLAEDNPVNCEVAHAMITALGCDVDVARNGMQAVAALSR-----------QSY 500
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D + MDC+MP ++G+EATR++R +E H IIALTAHAMAG + AGMD L+K
Sbjct: 501 DLVFMDCQMPELDGYEATRVVRLQERGSGRHTTIIALTAHAMAGSREYCLSAGMDDFLSK 560
Query: 1079 PLQKDKLLDVVKS 1091
P ++L +++++
Sbjct: 561 PFNLEQLQEMLEN 573
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
G+ L+V+D+ +V V + K G +G+E + + ++ L
Sbjct: 3 TGRDILIVDDNEVVCGVLVELFQKEGYDSWSAASGEECLEELLQVACKL----------- 51
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+M+D +P ++G E R +R++ DV I +T+H A + + G +L KP
Sbjct: 52 VMLDVRLPGISGIEVLRAVRRDHPGLDV----IIMTSHVSLETAVQALRLGAQDYLFKPF 107
Query: 1081 QKDKLLDVVKSIDETMEKQ 1099
D L VV ++D+ ME++
Sbjct: 108 --DDLEMVVATVDKVMERR 124
>gi|124005780|ref|ZP_01690619.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
23134]
gi|123988848|gb|EAY28454.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
23134]
Length = 662
Score = 116 bits (290), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 148/302 (49%), Gaps = 50/302 (16%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED-ANPGTDLAENLGLIRTCSKDL 443
E+ +R K+ A+ SH++R L IIGL +L E NP A+ L I++ L
Sbjct: 153 EELKRIEQFKSNFFAEISHELRTPLNGIIGLTDLLLEVMTNPHH--ADYLKAIQSSGNHL 210
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLG 503
+ I+N V++MSKIE+G+M+ E NL ++L+ +V + ++KG+ V +VL
Sbjct: 211 VTIVNDVLDMSKIESGQMQFEETHINLPEMLQNIVLSFKQKFMQKGIQV------NTVLA 264
Query: 504 SC---HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ V GD+V+L QIL NLV N++KFTSEG +S+ +F + ++++
Sbjct: 265 TDVPEEVLGDKVRLTQILYNLVGNAIKFTSEGEVSIEI-----TFVAPVPSADQ------ 313
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+Q +F V D+G GI K++ IFE + Q +
Sbjct: 314 ------------------------AEQIQLDFIVKDSGIGIKKERLQQIFEPYQQASKQT 349
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
G GLGL IV+ ++ L G I++ + GE G F F + L E E P T+ D
Sbjct: 350 TRLYGGTGLGLSIVRQLIELQGGHISVNSRW-GE-GTIFNFVLPLKLAPEIE-PLTNSPD 406
Query: 681 PR 682
R
Sbjct: 407 FR 408
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL-PYDYIM 1022
K L+ +D+ + L +L + K NGKEA + L K+G+A +D ++
Sbjct: 420 KVLLADDNDVNLLFARQILQEWNCKVITVSNGKEAVE--------LLKKGEAKEAFDLVL 471
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MD MP M G EAT IRK + +PIIALTA ++ V MD +L KP +K
Sbjct: 472 MDVYMPEMTGTEATHYIRKVLQISPDQLPIIALTASVSQQERNEGVLDLMDDYLIKPFKK 531
Query: 1083 DKL 1085
+ L
Sbjct: 532 EDL 534
>gi|381157616|ref|ZP_09866850.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
gi|380881479|gb|EIC23569.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
Length = 1398
Score = 116 bits (290), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 139/289 (48%), Gaps = 54/289 (18%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLI 436
M A EQAE + +K+ LA SH++R + AI+G LC + T L+E L I
Sbjct: 628 MLAKEQAETANQSKSAFLANMSHEIRTPMNAIMGFSHLCMQ-----TQLSEKQYGYLEKI 682
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
T S+ LLG++N ++++SK+EAG++EL F L +++E V + +KG++ ++D
Sbjct: 683 HTASQSLLGLINDILDVSKVEAGRLELERIPFELDEVIERVASIIAIRAEQKGLEFLID- 741
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
D + H+ GD ++L Q+L NL+SN++KFT G +S+R A++
Sbjct: 742 TDLEI--PPHLIGDPLRLGQVLLNLLSNAVKFTERGEVSLRIALQG-------------- 785
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
R + + FEV D+G G+ + +F F Q
Sbjct: 786 --------------------------REHDTAELTFEVQDSGIGMSEADAARLFRPFTQA 819
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ G GLGL I + +V +M G + +PGE G F F+ L
Sbjct: 820 DSSTTRKYGGSGLGLVISKRLVEMMGGALRFR-SQPGE-GSVFYFSAEL 866
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 13/138 (9%)
Query: 952 DGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRK 1011
D S + G + L+VED+ I +V +L G V NG++A L LR+
Sbjct: 1023 DDGASRAQVQGARLLLVEDNPINQQVACELLAGAGIGVMVAENGQQA-------LEILRR 1075
Query: 1012 EGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAG 1071
E +D ++MD +MPVM+G ATR IR + +P+IA+TA+AMA + +AG
Sbjct: 1076 E----TFDGVLMDMQMPVMDGVTATRAIRAQTALQ--RLPVIAMTANAMASDIERCREAG 1129
Query: 1072 MDFHLTKPLQKDKLLDVV 1089
M+ H+ KP+ D L V+
Sbjct: 1130 MNDHIAKPIDPDVLFQVL 1147
>gi|254784466|ref|YP_003071894.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
T7901]
gi|237686265|gb|ACR13529.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
T7901]
Length = 781
Score = 116 bits (290), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 146/309 (47%), Gaps = 53/309 (17%)
Query: 366 AAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP 425
AAK E +I+++ A QA K+ +A SH++R + +IG++E+ + P
Sbjct: 245 AAKEEKIETRRMIERVKAANQA------KSQFIATMSHEIRTPMNGVIGMIEMLRD--TP 296
Query: 426 GTDLAEN-LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHV 484
D ++ L +I + LL I+N +++ SKIEAGKM L +F+L +LL + V ++
Sbjct: 297 LNDSQKHYLDVIFRSGESLLEIINDILDYSKIEAGKMNLENVDFDLNELLNDCVQLFSAT 356
Query: 485 GIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
K+ ++ V C S +RGD +L+QI+ NL+ N+ KFTS GH+
Sbjct: 357 THKRDIEFV---CAISPETPTQLRGDPTRLRQIVVNLIGNAFKFTSNGHVM--------- 404
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
V+ K L D + H + R F + D+G GI K+
Sbjct: 405 -----------VLVKSLQ-----------DRTSEHPLLR--------FSIVDSGIGISKE 434
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
Q ++F+ F Q + G GLGL I + + LM G I + + E G +G F F +
Sbjct: 435 IQRNLFQAFNQADTSTTRRYGGTGLGLAICKQLAELMGGTIGV-ESEYG-KGSTFWFTIR 492
Query: 665 LTAVCERER 673
+R+R
Sbjct: 493 FDLPEDRQR 501
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 10/135 (7%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
P LV ED+A+ V +L K + +G+EA E + +
Sbjct: 651 PAQKLNVLVAEDNAVNRMVIEGLLNKHEIEPVFAEDGQEAVTAF---------ETASPRF 701
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASKIVDAGMDFHLT 1077
D I MDCEMP M+G+EAT IR+ E+ + +PIIALTAH A ++ + GM+++LT
Sbjct: 702 DLIFMDCEMPNMDGFEATEKIREYEKNRALTPMPIIALTAHVEAEHRQRVFNVGMNYYLT 761
Query: 1078 KPLQKDKLLDVVKSI 1092
KP+ DKL + + S+
Sbjct: 762 KPVTMDKLREALTSV 776
>gi|99080183|ref|YP_612337.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
gi|99036463|gb|ABF63075.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
Length = 827
Score = 116 bits (290), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 136/285 (47%), Gaps = 59/285 (20%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRT 438
A EQA+R KT LA SH++R + IIG+ +L E T+L E+ + +IRT
Sbjct: 443 AAEQADR---TKTEFLANMSHEIRTPMNGIIGMADLLSE-----TELHEDQEQYVQIIRT 494
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
SK LL I+N +++++++E+GK+ L +F+L +E VD+ V +KG+D+ ++
Sbjct: 495 SSKALLKIINDILDLTRMESGKLSLEPVDFDLESCIENAVDILRPVASEKGLDLTVNYAS 554
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
G VR D +L+QIL NLV N++KFT+ G + VR
Sbjct: 555 GL---PRTVRADDGRLRQILVNLVGNAVKFTASGRVDVRVL------------------- 592
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
C S N + +V DTG G+ + ++IF+ F Q
Sbjct: 593 -CAST----------------------NPYRLTIDVQDTGIGMTSAQLHNIFDRFSQADA 629
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + + M G+I + +PG RG CF ++
Sbjct: 630 ATTRSFGGTGLGLTISRLLAKQMDGDITVY-SDPG-RGSCFSLHI 672
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G K L+ ED+ + L L NG+EA + DL I
Sbjct: 697 GCKVLLAEDNRTNRLLIRKYLSDLSVDLIEASNGQEAVELCAHHRPDL-----------I 745
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MD MP M+G ATRLIR + + PI+ALTA+A A + AGM+ L+KP+
Sbjct: 746 LMDMSMPEMDGLTATRLIRMPQNPH--QPPIVALTANAFASDREACLAAGMNGFLSKPIN 803
Query: 1082 KDKLL 1086
K +LL
Sbjct: 804 KRELL 808
>gi|428211741|ref|YP_007084885.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428000122|gb|AFY80965.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 590
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 140/292 (47%), Gaps = 42/292 (14%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDAN----PGTDLAENLGLIRTCSKDLLGILNS 449
K+ LA SH++R L AIIG EL EDA + ++L I T K LL ++
Sbjct: 322 KSTFLANMSHELRTPLNAIIGYSELLQEDARDIGITEPEFLDDLRSINTAGKHLLALIGD 381
Query: 450 VMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRG 509
+++ SKIE+GKM+L E FNL + + ++ + I+K + ++ G LGS H
Sbjct: 382 ILDYSKIESGKMQLFLESFNLDKAIAQICHTAQPL-IEKNSNQLVVQFSGE-LGSMH--A 437
Query: 510 DRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNK 569
D K++QIL NL+SN+ KFT +G I V AV ++ RN I S
Sbjct: 438 DLTKMRQILFNLLSNAAKFTRQGKIEV--AVTQQP---------RNAIPLAFSP------ 480
Query: 570 EGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629
E +PN L F++ DTG G+ +D+ N++F+ F+Q + G GL
Sbjct: 481 ----------EQEWDPNDLFVVFQICDTGIGMTQDQLNNLFQAFMQADASTTREYGGTGL 530
Query: 630 GLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL---TAVCERERPDTDE 678
GL I + +M G+I + + GV F V L + E PD E
Sbjct: 531 GLAISRLFSQMMGGDIVVD----SQLGVGSTFTVYLPMEVKLPEPHEPDWQE 578
>gi|339498935|ref|YP_004696970.1| histidine kinase [Spirochaeta caldaria DSM 7334]
gi|338833284|gb|AEJ18462.1| histidine kinase [Spirochaeta caldaria DSM 7334]
Length = 1342
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 151/308 (49%), Gaps = 45/308 (14%)
Query: 341 SLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAK 400
+++ LV M+ A L L I + K K E + NA E AE+ + K+ LA
Sbjct: 803 TVLFLVGMWSAQTQKLHLNQIELEKRKKLES-------EMRNAKELAEQANRAKSEFLAN 855
Query: 401 ASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGK 460
SH++R + AI+G E+ H+ A G + ++ K+LL +LN +++S+IEAGK
Sbjct: 856 LSHEIRTPMNAILGYTEMLHQ-ALEGDGRQNLVMVVEKNGKNLLTLLNDALDLSRIEAGK 914
Query: 461 MELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCN 520
+ E+ FN+ L+ ++V+M+ +KG+ + D SV + + GD K++QI+ N
Sbjct: 915 EIVQEKLFNIKILIRDLVEMFQLRAHEKGI-TLKSYIDESVPDT--IVGDETKIRQIIVN 971
Query: 521 LVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHS 580
L+ N++KFTSEG +S I A R S RN+ +D
Sbjct: 972 LLGNAIKFTSEGSVS-------------IFAETREYQS--------RNEYEWD------- 1003
Query: 581 VERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHL 640
LQ + V DTG GI ++ N IFE F Q ++ + G GLGL I S+
Sbjct: 1004 -----TSLQLQLRVVDTGPGIAEENINRIFEPFYQDPNHSITYG-GTGLGLTITASLAKT 1057
Query: 641 MKGEIAIA 648
M G I++
Sbjct: 1058 MGGTISVT 1065
>gi|317050263|ref|YP_004111379.1| PAS sensor protein [Desulfurispirillum indicum S5]
gi|316945347|gb|ADU64823.1| PAS sensor protein [Desulfurispirillum indicum S5]
Length = 1070
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 133/273 (48%), Gaps = 48/273 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN--PGTDLAENLGLIRTCS 440
A QAE S K+ LA SH++R L AI+G E+ EDA ++ +L I +
Sbjct: 557 ARRQAEDSSQLKSMFLANMSHELRTPLNAILGYSEMLQEDAAVMGAQEMVGDLAKIHSAG 616
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL ++N V+++SKIEAGKM++ EE N+A+L+ +V D + ++K + C G
Sbjct: 617 EHLLRLINDVLDISKIEAGKMDVYLEEVNIARLVRDVADTITPL-VRKNKNHFHLEC-GQ 674
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
LG+ H D K++QIL NL++N+ KFT G I++R +C
Sbjct: 675 NLGAMHT--DLTKVRQILFNLLNNAAKFTQNGSITLRV--------------------QC 712
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+ + + F+V DTG GI + + +S+F+ F Q +
Sbjct: 713 ---------------------QEDREIPTISFQVIDTGIGIEQQRLSSLFQSFTQADVSI 751
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
G GLGL I QS HL+ G I A +PG
Sbjct: 752 SRKYGGTGLGLAISQSYSHLLGGGIT-AHSKPG 783
>gi|414079219|ref|YP_007000643.1| multi-sensor hybrid histidine kinase [Anabaena sp. 90]
gi|413972498|gb|AFW96586.1| multi-sensor hybrid histidine kinase [Anabaena sp. 90]
Length = 1311
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 140/286 (48%), Gaps = 50/286 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA-NPGTDLAENLGLIRTCSK 441
A ++AE K+ LA SH++R + ++G+ L E NP + + L +RT
Sbjct: 767 ARQEAESALQAKSSFLANMSHEIRTPMNGVLGMTSLLLETPLNP--EQQDFLETVRTSGD 824
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV-VLDPCDGS 500
LL ++N ++++SK+EAGKM L +FNL+ ++EV+++ KG+++ L P D
Sbjct: 825 ALLSLINEILDLSKLEAGKMMLETLDFNLSTCIQEVIELLAPQAHDKGLEIAALIPADVP 884
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +++GD +L+Q++ NL+ N +KFTS+G + V+
Sbjct: 885 I----YIQGDASRLRQVIMNLMGNGIKFTSQGKVIVQ----------------------- 917
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
L + + +F + DTG GI + +N++F+ F QV +
Sbjct: 918 -----------------LELISETDDTATIQFAIIDTGIGITTEDKNNLFQPFTQVDASI 960
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
G GLGL I Q +V LM G+I + + E G +G F FN+ T
Sbjct: 961 TRKYGGTGLGLAICQQLVTLMGGKIGL-NSEIG-KGSKFWFNLSFT 1004
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 20/136 (14%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
S K + K L+ ED+ + KV L LG + + NG+E + + KI
Sbjct: 1165 SNKNTSKLKLLLAEDNLVNQKVFLKQLQNLGYQADAVANGQEVLELLDKI---------- 1214
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKE------EEQYDVHIPIIALTAHAMAGVASKIVD 1069
YD I MDC+MP+++G AT+ IR+ + Q V +IA+TA+AM +D
Sbjct: 1215 -AYDLIFMDCQMPILDGLAATKEIRRRPLSSFPKHQQPV---VIAITANAMKEDQKICLD 1270
Query: 1070 AGMDFHLTKPLQKDKL 1085
AGMD +L+KP+ KDKL
Sbjct: 1271 AGMDDYLSKPVAKDKL 1286
Score = 43.9 bits (102), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 1014 KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
+ +PYD ++D +MP ++G IRK +V P+I LT K +D G
Sbjct: 1067 QQMPYDIAIIDMQMPEIDGLTLGIQIRKNPAIANV--PLIMLTCTNQRDEVKKALDIGFI 1124
Query: 1074 FHLTKPLQKDKLLDVVKSI 1092
+L KP++ +LLD + +I
Sbjct: 1125 SYLVKPIKPTRLLDTIMNI 1143
>gi|357632713|ref|ZP_09130591.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
gi|357581267|gb|EHJ46600.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
Length = 943
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 137/296 (46%), Gaps = 55/296 (18%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A QAE S K+ LA SH++R L+ IIGL ++ P ++ ENL +I S+
Sbjct: 433 RARRQAEAASRAKSDFLANMSHEIRTPLSGIIGLTQMTLSQ-TPRPEVRENLEMILDSSR 491
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LLGI+N +++ SKIEAGKME +F+L + L+ + + +KG+ + SV
Sbjct: 492 SLLGIVNDILDFSKIEAGKMEFSSVDFDLREALDRTMKPFQFSSRQKGLKL-------SV 544
Query: 502 LGSCHV----RGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ V GD ++ Q++ NLV N++KFT +G ++V
Sbjct: 545 RIASDVPEVLNGDPDRIMQVVRNLVGNALKFTDQGEVAVE-------------------- 584
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
FR + R + L E V DTG GIP+D+ +F+ F Q++
Sbjct: 585 --------FR-------------LLRPGDPLLVECSVRDTGIGIPEDRLPDLFQVFTQLE 623
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
+ G GLGL I + +V +M G I + + G F F V L E +R
Sbjct: 624 ASRTKRFGGTGLGLAISRRLVEMMGGTIGVESRS--NHGSTFSFTVSLRPAREEQR 677
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 12/132 (9%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G + L+ ED+ + L + G + + +G EA + + P D +
Sbjct: 693 GLRVLLAEDNQVNRLFLKHFLVEAGCEVRLAGSGGEALALLAQG-----------PADLV 741
Query: 1022 MMDCEMPVMNGWEATRLIRKEE-EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+MD +MP M+G EATR IR E + +P++ALTA++M G + + AG+D +++KP+
Sbjct: 742 LMDIQMPEMDGTEATRRIRDGEVGEAARRLPVVALTAYSMKGDRERFLSAGLDDYVSKPV 801
Query: 1081 QKDKLLDVVKSI 1092
D+L V++ +
Sbjct: 802 DVDELFMVMRRV 813
>gi|428316224|ref|YP_007114106.1| multi-sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
gi|428239904|gb|AFZ05690.1| multi-sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
Length = 1135
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 130/270 (48%), Gaps = 28/270 (10%)
Query: 398 LAKASHDVRASLAAIIGLVELCHED-ANPGTD-LAENLGLIRTCSKDLLGILNSVMEMSK 455
LA SH++R L AIIG E+ E+ A G D L +L IRT + LL ++N ++++SK
Sbjct: 888 LANMSHELRTPLNAIIGYSEMLQEETAELGYDELTPDLDKIRTSGRHLLSLINDILDISK 947
Query: 456 IEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLK 515
IEAG+M+L E F++A L+EEV + K G + LD +G+ H GD K++
Sbjct: 948 IEAGRMDLYLETFDIAALMEEVASTAAPLIEKNGNTLNLDQITN--IGTMH--GDITKVQ 1003
Query: 516 QILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDL 575
QIL NL+SN+ KFT G I++ A+ +K + +S+ +KE
Sbjct: 1004 QILLNLLSNAAKFTQNGTITLTASREKIAGDSSETKQENTSEPAAISQSSMGSKEF---- 1059
Query: 576 DALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQ 635
DTG G+ D+ IF+ F Q + G GLGL I Q
Sbjct: 1060 --------------LVINCTDTGIGMTPDQLQHIFQPFTQADASTTRKYGGTGLGLAISQ 1105
Query: 636 SMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+M G I++ +E GV F + L
Sbjct: 1106 RFCLMMGGNISVKSQE----GVGSTFTIRL 1131
>gi|410938354|ref|ZP_11370207.1| 7TM diverse intracellular signaling [Leptospira noguchii str.
2006001870]
gi|410786583|gb|EKR75521.1| 7TM diverse intracellular signaling [Leptospira noguchii str.
2006001870]
Length = 804
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 139/293 (47%), Gaps = 44/293 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E +G++ +
Sbjct: 406 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG-TTKLNEEQKEYVGVLSVSA 464
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ + + +K ++ L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKIILEREVFSIRSVLDEIHDLLFPLAKQKEINFRL---EGK 521
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V GD ++L+QIL NL N +KFT+ G + ++ A K S NV
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKN--------ISKDNV---- 569
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
EF V D+G GIP +KQ +FE F Q +
Sbjct: 570 ----------------------------SIEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 601
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL I + +V L G + + K+ F + + +V E E+
Sbjct: 602 ARKFGGSGLGLSITKQLVELQGGVLKLESKDGEGSKFTFTIDYDIPSVLEIEK 654
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 91/216 (42%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 598 DTSTARKFGGSGLGLSITKQLVELQGGV------LKLESKDGEGSKFTFTIDYDIPSVLE 651
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V +++ + LV ED+ + L K
Sbjct: 652 IEKILEAEKTKDLEK---SFQDVVSKTT-----------RILVAEDNETNCLLIERALKK 697
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + + + +D I+MD MP ++G EAT+ IR + +
Sbjct: 698 LGYDPTVVHNGREVIERM-----------QLGNFDIILMDIHMPEVDGIEATKWIRSKNQ 746
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ I IIALTA + K V GM+ LTKPL
Sbjct: 747 NSESPI-IIALTADVIESNKEKYVSKGMNDCLTKPL 781
>gi|421496245|ref|ZP_15943481.1| hypothetical protein B224_002742 [Aeromonas media WS]
gi|407184737|gb|EKE58558.1| hypothetical protein B224_002742 [Aeromonas media WS]
Length = 1322
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 47/286 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A ++AE + K+ LA SH++R + AI+GL L D P + E L I ++
Sbjct: 700 QAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKRD-TPDSTQHERLEKIDHAAQ 758
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL I+N ++++SKI+AGKM L + +F+L +L+ V + KG+ +++D D
Sbjct: 759 HLLTIINDILDLSKIDAGKMALEQGDFSLTAMLDNVSALVSEQARAKGLTIMVDMGDSPT 818
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
V GD +L+Q L N +N++KFT +G +++R V R + S L
Sbjct: 819 W----VHGDITRLRQALLNYAANAIKFTEQGAVTLRVRVA------------RPLASGYL 862
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
FEV+DTG GI +++ +F+ F Q +
Sbjct: 863 ----------------------------LRFEVEDTGIGISPEQREKLFQAFEQADVSTT 894
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
G GLGL I + LM GE ++ +G CF F L+A
Sbjct: 895 RKYGGTGLGLAITSRLAALMGGEAGVSSTL--GQGSCFWFTAALSA 938
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED+AI +V +L G E NG+EA + V + +D I+M
Sbjct: 963 RVLLVEDNAINREVVLELLCNSGLVIETAVNGQEALERV-----------RQHAFDLILM 1011
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MPVM+G++ATR IR + +PI+ALTA A AGM+ +TKP+
Sbjct: 1012 DIQMPVMDGYDATRAIRTLPGRE--LLPILALTASAFEEDRKACESAGMNDFITKPVTPA 1069
Query: 1084 KLLDVVK 1090
KL + ++
Sbjct: 1070 KLFEALQ 1076
>gi|300865282|ref|ZP_07110096.1| Sensor protein [Oscillatoria sp. PCC 6506]
gi|300336755|emb|CBN55246.1| Sensor protein [Oscillatoria sp. PCC 6506]
Length = 663
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 132/269 (49%), Gaps = 34/269 (12%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA SH++R L AI+G ++ D TD ENL +I + LL ++N V++MSKIE
Sbjct: 169 LANMSHELRTPLNAILGFTQVMIRDPFLSTDQLENLRIINRSGEHLLDLINDVLDMSKIE 228
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQI 517
AG + + E F+L +LL+ + +M++ KKG+ + +++ D KL+
Sbjct: 229 AGIITISETSFDLYRLLDTLEEMFHFKAEKKGLKLRFTVHPDV---PHYIKADEKKLRIC 285
Query: 518 LCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDA 577
L NL+ N++KFT G +++R + I S ++ +S
Sbjct: 286 LINLLGNAIKFTENGSVTLRVNLGG-------IESKPGLVHTTVS--------------- 323
Query: 578 LHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSM 637
E P FEV+DTG GI ++ +S+F+ FVQ E EG GLGL I +
Sbjct: 324 ----ESEP--FPITFEVEDTGVGIAPEEIDSLFDAFVQ-SEAGRKSAEGTGLGLTITRKF 376
Query: 638 VHLMKGEIAIADKEPGERGVCFRFNVLLT 666
V L+KG I +G F+FN+ ++
Sbjct: 377 VQLLKGNITAVSA--LNKGTIFKFNIQIS 403
Score = 47.4 bits (111), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
+N L+V+D L+V SA L + G K NGK A + ++ P D
Sbjct: 8 INKGNILIVDDTPENLQVLSATLSESGYKVRGVINGKMAV-----------RAARSAPPD 56
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I++D MP NG+E ++ + + IP+I ++A K G + ++TKP
Sbjct: 57 LILLDIRMPDTNGYEVCEELKADSQTS--KIPVIFISALDEVLDKVKAFQVGGEDYITKP 114
Query: 1080 LQKDKLL 1086
Q ++++
Sbjct: 115 FQVEEVV 121
>gi|172037290|ref|YP_001803791.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
51142]
gi|354553829|ref|ZP_08973135.1| integral membrane sensor hybrid histidine kinase [Cyanothece sp.
ATCC 51472]
gi|171698744|gb|ACB51725.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
51142]
gi|353554546|gb|EHC23936.1| integral membrane sensor hybrid histidine kinase [Cyanothece sp.
ATCC 51472]
Length = 848
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 132/264 (50%), Gaps = 36/264 (13%)
Query: 384 TEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDL 443
T+Q E+ + K L +H++R L IIG ++ ++D + + L +I S+ L
Sbjct: 372 TKQLEKANQAKREFLGNINHELRTPLNLIIGYIDRLYQDGYLNNEQKKQLDIIDRNSQHL 431
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLG 503
L ++N ++++SKIE+G + L E FNL+QLL + +++ KG++++L+ L
Sbjct: 432 LSLINQILDISKIESGHITLQENSFNLSQLLTNLQEVFNLSCYSKGLNLILENKIEDKLN 491
Query: 504 SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSK 563
++ D+ KLKQIL NL+ N++KFT +G I + A V SN
Sbjct: 492 --YIYADKNKLKQILINLLHNAVKFTDKGMIKISAEV-----------SNHR-------- 530
Query: 564 LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH 623
+LH + PN +V DTGKGI +++ + +F+ F Q +T
Sbjct: 531 -------------SLHYSKNQPN-YTLRIQVKDTGKGIAREEISQLFKAFEQT-QTGRNL 575
Query: 624 QEGLGLGLGIVQSMVHLMKGEIAI 647
+G GLGL I + LM G I +
Sbjct: 576 NQGTGLGLYISHQFIKLMGGNITV 599
>gi|298529160|ref|ZP_07016563.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510596|gb|EFI34499.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1154
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 136/288 (47%), Gaps = 27/288 (9%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRT 438
A +A+ S K+ LA SH++R + +IG+ L E TDL E +R+
Sbjct: 406 ALTRADAASKAKSEFLANMSHEIRTPMNGVIGMTGLLLE-----TDLNETQRRYAETVRS 460
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
+ LL +LN +++ SKIE+GK+EL F+L L+ M +KG++ + C
Sbjct: 461 SGQALLALLNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAFKAEEKGLEFI---CS 517
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
++ GD +++QIL NLV N++KFT G + VR ++++ ++
Sbjct: 518 ADPDVPDNLIGDPGRIRQILTNLVGNAVKFTERGEVVVRVSIQESGVRRQETGDKSQETG 577
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
+++E D + + F V DTG GIP+DK +F+ F QV
Sbjct: 578 D-------KSQETGD------KSQESEEFCMLRFSVRDTGIGIPEDKIGLLFQSFSQVDA 624
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
+ G GLGL I + + LM GE+ + E +G F F V L+
Sbjct: 625 SVTRKFGGTGLGLAISRQLAELMGGEVGVESIE--GQGTTFWFTVPLS 670
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 47/162 (29%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ +V A+L G + NG EA K K +PYD ++M
Sbjct: 842 RILLAEDNITNQQVALAMLKNFGLSADAVANGLEAI-----------KALKTVPYDLVLM 890
Query: 1024 DCEMPVMNGWEATRLIR----------------KEEEQY--------------------D 1047
D +M M+G ATR IR K E Q +
Sbjct: 891 DVQMLEMDGLAATRRIRAAEIRGRELEVRDQRLKSESQNSSIPESLNPLIPQSLNSRIPE 950
Query: 1048 VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
IPIIALTAHAM G + ++AGMD +LTKPL+ +L +++
Sbjct: 951 FRIPIIALTAHAMQGYREQCLEAGMDDYLTKPLEPVQLAEML 992
Score = 49.3 bits (116), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 955 CSEKP-----LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDL 1009
C + P L G + LVV+D+A ++ G + + ++G A + L++
Sbjct: 675 CDQIPSMSADLRGLRALVVDDNATNREILLTRFLDWGLRPDEAKDGPTALGRLYTALAE- 733
Query: 1010 RKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVD 1069
PY ++D +MP M+G R IR +++ DV ++ +++ M G A ++ D
Sbjct: 734 -----DDPYHLAIIDMQMPGMDGEFLGRTIRADQKLQDVR--LVMMSSAGMQGDARRMKD 786
Query: 1070 AGMDFHLTKPLQKDKLLD 1087
L KPL+ D+L D
Sbjct: 787 IWFAAFLAKPLRHDELFD 804
>gi|418693864|ref|ZP_13254913.1| 7TM diverse intracellular signaling [Leptospira kirschneri str. H1]
gi|409958441|gb|EKO17333.1| 7TM diverse intracellular signaling [Leptospira kirschneri str. H1]
Length = 820
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 139/293 (47%), Gaps = 44/293 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 422 IQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 480
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ + + +K +D L +G
Sbjct: 481 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLFPLAKQKEIDFRL---EGK 537
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+V GD ++L+QIL NL N +KFT+ G + ++ A K S
Sbjct: 538 SEIQEYVYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKNIS---------------- 581
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
K+G + EF V D+G GIP +KQ +FE F Q +
Sbjct: 582 --------KDG----------------VSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 617
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL I + +V L G + + KE F + + ++ E E+
Sbjct: 618 ARKFGGSGLGLSITKQLVELQGGVLKLESKEGKGSKFTFTIDYDIPSILEIEK 670
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 89/213 (41%), Gaps = 33/213 (15%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCTD---PNPLNKLK 927
D +R F GS L + + K L E +G + K E + D P+ L K
Sbjct: 614 DTSTARKFGGSGLGLSITKQLVELQGGVLKLESK---EGKGSKFTFTIDYDIPSILEIEK 670
Query: 928 SFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGA 987
AE + S Q V ++S + LV ED+ + L KLG
Sbjct: 671 ILEAEKTKDLEK---SFQDVVSKS-----------ARILVAEDNETNCLLIERALKKLGY 716
Query: 988 KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYD 1047
V NG+E + + + +D I+MD MP ++G EAT+ IR + +
Sbjct: 717 DPTVVHNGREVIERM-----------QLETFDIILMDIHMPEVDGIEATKWIRSKNQNSK 765
Query: 1048 VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I IIALTA A+ K + GM+ LTKPL
Sbjct: 766 FPI-IIALTADAIESSREKYISKGMNDCLTKPL 797
>gi|332527595|ref|ZP_08403642.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
JA2]
gi|332111998|gb|EGJ11975.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
JA2]
Length = 1425
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 155/323 (47%), Gaps = 55/323 (17%)
Query: 357 GLFIILIAKAAKREMFLCAALIKQMNA-----TEQAERKSMNKTFALAKASHDVRASLAA 411
G +++ I +A++ A +++ NA ++AE S +K+ LA SH++R + A
Sbjct: 740 GFYVMAIDISAQKR---AEAGLQRANAELVVERDRAEAASRSKSAFLANISHEIRTPMNA 796
Query: 412 IIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLA 471
IIGL L DA+ T+ E L IR ++ LL ILN V+++SKIEAG++EL F+L
Sbjct: 797 IIGLAHLMLRDAHADTE-RERLLKIRGQAQHLLQILNDVLDLSKIEAGRLELEAIPFSLD 855
Query: 472 QLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE 531
LL +KG+++VLD D + GD +L Q L NL+SN++KFT +
Sbjct: 856 TLLARAFQTVATEAQRKGLELVLD-TDAV---PDRLVGDPTRLLQALLNLLSNAVKFTEK 911
Query: 532 GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFE 591
G + ++A +Q A R ++
Sbjct: 912 GWVRLQA-------RQADHAEGRVLL---------------------------------R 931
Query: 592 FEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651
F V DTG GIP D+ ++F+ F QV + G GLGL + + M +M GE+ AD
Sbjct: 932 FTVTDTGVGIPPDRLGALFQAFEQVDSSTSRRHGGTGLGLALTRHMASMMGGEVG-ADST 990
Query: 652 PGERGVCFRFNVLLTAVCERERP 674
PG G CF F+ L E+ P
Sbjct: 991 PGA-GSCFWFSAWLALEGEQPAP 1012
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 21/160 (13%)
Query: 926 LKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKL 985
L+ GA + A + S Q AA C +PL L+VED+ I +V +L +
Sbjct: 1141 LRHSGAASEAVMPPPHGSGQAEAALRARGC-RRPL-----LLVEDNPINQEVALELLRAV 1194
Query: 986 GAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQ 1045
G + ++ +G+EA + G+A Y ++MD +MP M+G EATR +R+
Sbjct: 1195 GLEVDLAVDGREAL-----------RMGQARDYAAVLMDMQMPEMDGLEATRELRR---- 1239
Query: 1046 YDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+ +PI+A+TA+A + + AGM+ H+ KP+ L
Sbjct: 1240 TGLAVPILAMTANAFGEDRAACLAAGMNDHIAKPVDPQTL 1279
>gi|162461092|ref|NP_001104866.1| histidine kinase2 [Zea mays]
gi|38347686|dbj|BAD01584.1| histidine kinase 2 [Zea mays]
Length = 1007
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 165/334 (49%), Gaps = 30/334 (8%)
Query: 352 GVISLGLFIILIAKAAKREMFLCAALIKQMNA-TEQAERKSMNKTFALAKASHDVRASLA 410
G + + L I I A + + ++M+ ++AE + K+ LA SH++R +
Sbjct: 380 GTLVIALLIGYIVHATAKRIARVEDDFQEMSLLKKRAEDADIAKSQFLATVSHEIRTPMN 439
Query: 411 AIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNL 470
++G++++ D + T + + + K L+ ++N V++ +KIE+GK+EL F+L
Sbjct: 440 GVLGMLQMLM-DTDLDTTQQDYVRTAQASGKTLVSLINEVLDQAKIESGKLELEVVPFDL 498
Query: 471 AQLLEEVVDMYYHVGIKKGVDV---VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMK 527
+ ++++ ++ +KG+++ V D +++G D +++QI+ NLV NS+K
Sbjct: 499 RTVCDDILSLFCGKAQEKGLELAVFVSDQVPQTLIG------DPGRIRQIITNLVGNSIK 552
Query: 528 FTSEGHISVRAAVKKK---SFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERN 584
FT +GHI + V ++ + + N +S R+ E F L S E N
Sbjct: 553 FTEKGHIYLTVHVVEEIMHCLEVETGIQYTNTLSGYPVANRKRSWENF----RLFSRELN 608
Query: 585 PNLLQFE----------FEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIV 634
+ + F V+DTG GIP D Q+ +F F+QV + G G+GL I
Sbjct: 609 SSEMPFAPIASDSISLMISVEDTGAGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSIS 668
Query: 635 QSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
+ +V LMKGEI A K + G F F +LT V
Sbjct: 669 KCLVGLMKGEIGFASKP--QVGSTFTFTAVLTRV 700
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 27/143 (18%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L+ K+ +VV+D+ + LKV + L K GA+ +GKEA ++ L+ +D
Sbjct: 860 LHKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEA-------ITLLKPPHN---FD 909
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHI-----------------PIIALTAHAMAG 1062
MD +MP M+G+EAT+ IR E + I PI+A+TA +
Sbjct: 910 ACFMDIQMPEMDGFEATKRIRVMERDLNEQIERGEAPPECVGVRQWRTPILAMTADVIQA 969
Query: 1063 VASKIVDAGMDFHLTKPLQKDKL 1085
+ + + MD +++KP + ++L
Sbjct: 970 THEQCLKSEMDGYVSKPFEGEQL 992
>gi|254787382|ref|YP_003074811.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
gi|237686080|gb|ACR13344.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
Length = 1547
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 133/275 (48%), Gaps = 48/275 (17%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA SH++R L ++G++ L + + L + S LL I+N +++ SK++
Sbjct: 872 LAMMSHEIRTPLNGVMGMLSLLNR-TQLSDEQRRKLTIASHSSNTLLNIINDILDFSKVD 930
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQI 517
AGK+EL EFNL LEE + +K V+++LD D + + V GD +++Q+
Sbjct: 931 AGKIELESIEFNLIAQLEEFSESMAMRAQEKHVELILDTTD---INTPMVCGDPGRIRQV 987
Query: 518 LCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDA 577
L NLV N++KFT+EG + VR A+ + K D+I
Sbjct: 988 LANLVGNAIKFTAEGEVLVRCALVPQ--KDDLI--------------------------- 1018
Query: 578 LHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSM 637
F+ V DTG GI DK + +F F QV + G GLGL I + +
Sbjct: 1019 ------------FQVSVVDTGIGIENDKLDELFNPFTQVDASTTREYGGTGLGLAICKKL 1066
Query: 638 VHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
LM G+IA A E G G F F+VLL A CE++
Sbjct: 1067 CVLMGGDIA-AHSELGS-GSTFDFHVLLQA-CEQQ 1098
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 12/147 (8%)
Query: 946 QVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKI 1005
Q A + D + +NG+ L+VED+ + V +L +G NG EA D
Sbjct: 1247 QAAGEGD-ELDSGQVNGR-VLLVEDNPVNQDVARMMLDDVGVVVTTAGNGVEALDA---- 1300
Query: 1006 LSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR--KEEEQYDVHIPIIALTAHAMAGV 1063
L+ + Y ++MDC+MP M+G+E TR IR K E Y IPIIA+TA+AM G
Sbjct: 1301 ---LQSAQQWDLYSLVLMDCQMPEMDGYETTRSIRAGKAGEIYK-KIPIIAMTANAMKGD 1356
Query: 1064 ASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
+ AGMD +++KP+ L D ++
Sbjct: 1357 KERCFAAGMDDYISKPIDPQVLEDRLR 1383
>gi|427730842|ref|YP_007077079.1| signal transduction histidine kinase [Nostoc sp. PCC 7524]
gi|427366761|gb|AFY49482.1| signal transduction histidine kinase [Nostoc sp. PCC 7524]
Length = 653
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 151/302 (50%), Gaps = 12/302 (3%)
Query: 377 LIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLI 436
LIK+ A EQA + K+ LA SH++R L AI+G ++ D T+ +NL +I
Sbjct: 104 LIKRQQAAEQA---NFAKSEFLANMSHELRTPLNAILGFTQIMSHDHTLSTENQQNLEII 160
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
+ LL ++N ++++SKIEAG+ L F+L LL+ V + KG+ + +
Sbjct: 161 NRAGEHLLNLINDILDISKIEAGRTTLNLSNFDLLHLLDNVQKILQVRAAAKGLQLKFEY 220
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
+++ D KL+QIL N++SN++K+T+ G +++R + K+ +S
Sbjct: 221 AANL---PRYIQTDASKLRQILLNILSNAIKYTASGSVTLRVKLGTGD-KERNPSSCFFP 276
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
I C ++ R+K + SV P+L+ FE+ DTG GI + + +FE F Q
Sbjct: 277 IEHCNTR-GQRSKATTLSPPSPLSVTHLPSLI---FEIQDTGMGIAPQELDLLFEAFRQT 332
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT 676
E+ Q+G GLGL I + V LM G+I + F V L + E + P T
Sbjct: 333 -ESGRKSQQGTGLGLVISRKYVQLMGGDITVFSTVGIGSKFTFNIQVDLISASEIQLPPT 391
Query: 677 DE 678
+
Sbjct: 392 PD 393
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 34/104 (32%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHI-------------P---------------- 1051
I+MD MPVM+G+EATRLIR E Q++ I P
Sbjct: 452 ILMDMRMPVMDGYEATRLIRNHEMQHEKPILTSIRNNSTTQCLPNLRYLSECMSAVQSKT 511
Query: 1052 -----IIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
IIALTA A KI+ +G D + KP + LL+ +K
Sbjct: 512 NTRTIIIALTAIAFEEERQKILSSGCDDCICKPFVQGVLLEKLK 555
>gi|343516482|ref|ZP_08753517.1| PAS domain protein [Vibrio sp. N418]
gi|342796067|gb|EGU31762.1| PAS domain protein [Vibrio sp. N418]
Length = 1814
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 151/301 (50%), Gaps = 63/301 (20%)
Query: 365 KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
K A+RE+ L A ++AE + K+ LA SH++R + AIIG+ L +
Sbjct: 973 KEAERELML---------AKQKAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLAMQ--- 1020
Query: 425 PGTDL----AENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDM 480
TDL ++ + I+T ++ LLGI+N +++ SKIEAGK++L + EF+L ++ +V +
Sbjct: 1021 --TDLNKKQSDYVNKIQTSAESLLGIINDILDFSKIEAGKLDLEQTEFDLESTIDNLVQV 1078
Query: 481 YYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAV 540
+K +++++D D + H+ GD ++L QIL NL +N++KFT +G I V+A +
Sbjct: 1079 VSQRTQEKDLELLVD-LDPQL--PTHLIGDPLRLGQILLNLANNAIKFTDQGEIIVKAEL 1135
Query: 541 KKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKG 600
+E++ + L+ F V DTG G
Sbjct: 1136 ----------------------------------------IEQSDDKLEARFSVSDTGIG 1155
Query: 601 IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR 660
+ +++ +F+ F Q + G GLGL I +++ +M+G I + + E G+ G F
Sbjct: 1156 MTEEQMARLFQSFSQADASTTRKYGGTGLGLTISKTLAEMMEGSIWV-ESESGQ-GSTFF 1213
Query: 661 F 661
F
Sbjct: 1214 F 1214
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 82/137 (59%), Gaps = 14/137 (10%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G + L+VED+AI ++ + +L +G NG+EA D V + +D +
Sbjct: 1389 GARILLVEDNAINQEIATELLQMVGMDVTTANNGQEAVDLVG-----------SQDFDLV 1437
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MD +MPVM+G++AT++IR QYD +PIIA+TA+AM+G K + AGM+ HL KP+
Sbjct: 1438 LMDIQMPVMDGYQATQVIRNTG-QYD-DLPIIAMTANAMSGDKEKCLAAGMNDHLPKPIN 1495
Query: 1082 KDKLLD-VVKSIDETME 1097
+++ +V I+ T E
Sbjct: 1496 PNQVFQALVDWIEPTGE 1512
>gi|392557140|ref|ZP_10304277.1| sensor protein [Pseudoalteromonas undina NCIMB 2128]
Length = 1112
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 168/354 (47%), Gaps = 79/354 (22%)
Query: 344 LLVLMFIAGVISLGLFIILIAKAAKR------EMFLCA--ALIKQMNATEQ--------- 386
+L +M AG S+G ++ +A+ R E FL A ALI + ++EQ
Sbjct: 535 MLCVMIPAGSGSIG--VVCAEQASVRAWTQNEEGFLIAIGALIGSLYSSEQRIETEAELV 592
Query: 387 -----AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAE----NLGLIR 437
AE+ + K+ LA SH++R + ++G++ + T L + ++ L +
Sbjct: 593 MAKEAAEQAVIAKSEFLASMSHEIRTPMNGVLGMLNIIQ-----ATSLDQQQRHHIKLAQ 647
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
+ ++ LLGI+N +++ SKIEAGK+++ +FNL QLL E+V+ + ++LD
Sbjct: 648 SSAESLLGIINDILDFSKIEAGKLDIESIQFNLPQLLGEIVESFALKAESNNTQLILDTT 707
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
S + + D +L+QIL NL++N++KFT G + V A ++K
Sbjct: 708 HVS---TSEIVCDPNRLRQILNNLIANAVKFTQNGQVLVTATIEKT-------------- 750
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
LD N L E + DTG GI +KQ +F+ F Q
Sbjct: 751 -----------------LD-------NTTL---ECAIIDTGIGISFEKQKQLFDSFTQAD 783
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER 671
+ G GLGL IV+ + LM GE+++ P E G F F+V +T+V ++
Sbjct: 784 ASTTRQYGGTGLGLAIVKQLCELMGGEVSVYSL-PNE-GSTFTFSVNITSVIDQ 835
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 15/119 (12%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+VED+ + V A+L + F++ +G++A + + A Y I+MDC
Sbjct: 989 LLVEDNKVNQVVACALLKQAELTFDIAEDGEDALTKL--------NQANANTYQLILMDC 1040
Query: 1026 EMPVMNGWEATRLIRKE----EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+MP+M+G++AT IR+ E Q IPIIALTA+AM G K ++AGM+ +L+KPL
Sbjct: 1041 QMPIMDGYQATMAIREGLAGLENQ---TIPIIALTANAMRGDKDKCLNAGMNDYLSKPL 1096
>gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella
amazonensis SB2B]
gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella
amazonensis SB2B]
Length = 1763
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 137/287 (47%), Gaps = 54/287 (18%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLI 436
M A E A+ + K+ LA SH++R + AIIG+ +LC + T+L + I
Sbjct: 1024 MAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQ-----TELDRKQRNYVEKI 1078
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
SK LLGI+N +++ SKIEAGK+++ F L +LE++ DM+ K ++++
Sbjct: 1079 ERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSVKAADKQLELLFSV 1138
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
G H+ GD ++L Q+L NL++N++KFT G + +
Sbjct: 1139 APGV---PTHLEGDPLRLSQVLINLMNNAIKFTERGEVML-------------------- 1175
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
++ + R+ + +Q +F V D+G G+ ++Q +F+ F Q
Sbjct: 1176 --------------------SISELARDEDQVQLKFAVRDSGIGLTAEQQAKLFKSFSQA 1215
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ G GLGL I + +V LM GEI + D + G G F F V
Sbjct: 1216 DTSTTRKYGGTGLGLAICKQLVELMGGEIGV-DSQFG-NGSTFYFTV 1260
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 13/122 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK+ L+VED+ + +V S L ++G + NG+ A + + + +D
Sbjct: 1417 LKGKRILLVEDNEMNQEVASEFLEQVGVVLSIADNGQIALEKLGQ-----------QSFD 1465
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MDC+MPVM+G++ATR +RK +P++A+TA+AMAG + AGM+ H+ KP
Sbjct: 1466 LVLMDCQMPVMDGYQATRELRKLPGL--AELPVVAMTANAMAGDKEMCLLAGMNDHIAKP 1523
Query: 1080 LQ 1081
++
Sbjct: 1524 IE 1525
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
E+ L G LVV+D++ + L +G + R+G EA + +
Sbjct: 1273 EQELEGMAVLVVDDNSTARDILRTTLQSMGFSVDSARSGMEALEKCAE-----------R 1321
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIAL-TAHAMAGVASKIVDAGMDFH 1075
Y ++D +MP M+G E +R+ ++ P+I + +AHA + K+ + G++ +
Sbjct: 1322 DYRIALIDWKMPEMDGTETAARMRELKQP-----PLILMVSAHANSEFIDKVEEMGINGY 1376
Query: 1076 LTKPLQKDKLLDVVKS 1091
+TKP+ +LLD + S
Sbjct: 1377 ITKPISASRLLDGIMS 1392
>gi|83311112|ref|YP_421376.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
gi|82945953|dbj|BAE50817.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 848
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 139/295 (47%), Gaps = 55/295 (18%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN 432
+ + ++ A ++AE S K+ LA SH++R L IIG EL ++A + EN
Sbjct: 600 VAESFVRLDEARKRAEEASRMKSEFLANMSHELRTPLNGIIGFSELIRDEAA-DDETREN 658
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
+I S+ LL ++NS+++++KIEAG M L +E LA L+ E ++ KG+ +
Sbjct: 659 ADIIEKSSRHLLELVNSILDIAKIEAGAMTLSIQEVKLAPLVAEAAAVHQSAAQGKGITL 718
Query: 493 VLDPCDGSVLGSC--HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDII 550
V G C ++ D ++L+QIL NL+SN++KFT G +++
Sbjct: 719 -----SSRVAGDCPATIQADPLRLRQILHNLLSNAVKFTETGEVAL-------------- 759
Query: 551 ASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIF 610
SV+ P+ L F+V DTG GIP+ ++IF
Sbjct: 760 -----------------------------SVDLQPDHLV--FKVSDTGAGIPEAMLHAIF 788
Query: 611 EEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
E+F QV G GLGL + + +V LM G I + + +G F F + L
Sbjct: 789 EKFRQVDSFLTRSHSGTGLGLTLARHLVELMGGVIGV--ESTVGKGTTFHFTLPL 841
>gi|71907206|ref|YP_284793.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
RCB]
gi|71846827|gb|AAZ46323.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
RCB]
Length = 841
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 145/305 (47%), Gaps = 54/305 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A +QAE + +K+ LA SH++R L A+IG +L +D NL +I +
Sbjct: 380 ARDQAEAANQSKSAFLANMSHELRTPLNAVIGFSQLMEKDPGLLPVQQRNLEIINHSGRH 439
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N ++E+SKIE+GK+ + EE +L LLE+VV+M + + G+ + L+ + L
Sbjct: 440 LLTLINDILELSKIESGKLRMTTEETDLRLLLEQVVEMMHLRAQQLGLQLKLETTNLPPL 499
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ D +QIL NL+SN++KFT +G + + A + S +Q I
Sbjct: 500 ----IVIDPGMFRQILLNLLSNALKFTPKGEVCLHVAAEAVSAQQSRI------------ 543
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
F V DTG GI ++ + IF F QV
Sbjct: 544 ----------------------------RFSVRDTGIGISENDRERIFSSFEQVGPM--- 572
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER----PDTDE 678
HQ G GLGL I + V ++ GE+++ D E G G F F +L+ V E +R P T +
Sbjct: 573 HQGGTGLGLTISRRYVEMLGGELSV-DSELGN-GSDFHFTILV-GVGEMKRLPNAPATLQ 629
Query: 679 EDPRT 683
P T
Sbjct: 630 ISPET 634
>gi|373458202|ref|ZP_09549969.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
DSM 13497]
gi|371719866|gb|EHO41637.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
DSM 13497]
Length = 748
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 144/306 (47%), Gaps = 60/306 (19%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I+ A E+ ER + K LA SH++R + I+G+ EL E + + L +++
Sbjct: 212 IELKKAKEETERANKAKDEFLANMSHEIRTPMNGILGMTELALE-TRLTAEQRDYLNVVK 270
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIK---KGVDVV- 493
+ ++ LL I+N +++ SKIEAGK++L E +FNL + + DM + IK K +++
Sbjct: 271 SSAEALLAIINDILDFSKIEAGKLDLEEIDFNLYDM---IGDMIKPLAIKSNEKKIELAY 327
Query: 494 -LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
+DP D + ++GD ++L+QIL NL+ N++KFT +G + V +K + II
Sbjct: 328 FIDP-DVPIF----IKGDPIRLRQILINLLGNAIKFTEKGQV-VLEVLKAERLDDKII-- 379
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
+F V DTG GIP++ Q+ IFE
Sbjct: 380 -------------------------------------LKFGVHDTGIGIPREVQDKIFES 402
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAI------ADKEPGERGVCFRFNVLLT 666
FVQ + G GLGL I +V +M G+I + ++ G G F F L
Sbjct: 403 FVQADTSITRKFGGTGLGLAICMRLVRMMNGKIWLESPSTYPSRKKGGPGTSFFFTAQLH 462
Query: 667 AVCERE 672
RE
Sbjct: 463 EAEHRE 468
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 12/132 (9%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LV ED+ + K+ +L K G ++ +NG E +L L+K YD I+MD
Sbjct: 628 LVAEDNPVNQKLAIRLLEKNGYYADIAKNGLE-------VLEKLKKNH----YDLILMDV 676
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP M+G +AT+ IR E E HIPIIALTAHAM ++A MD +++KP++K++L
Sbjct: 677 QMPEMDGLQATQKIR-ELENGKSHIPIIALTAHAMKKDIDMCLNAAMDGYVSKPIRKEEL 735
Query: 1086 LDVVKSIDETME 1097
++ + +E
Sbjct: 736 FKEIERVAGAIE 747
Score = 47.0 bits (110), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 954 KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEG 1013
+ +K L G L+++D+ I +L K K +V + AF + + ++ R
Sbjct: 473 RILQKNLKGLNVLLIDDNPINRSYFQKILEK--NKLQVT-TAESAFKALEILKTNQR--- 526
Query: 1014 KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
+D I+ D +MP M+G+E + IR + V PII LT+ M G + + G++
Sbjct: 527 ----FDLIITDAQMPEMDGFELSTQIRALKNYKKV--PIILLTSSGMRGDSERCKQIGIN 580
Query: 1074 FHLTKPLQKDKLLDVVKSIDETM 1096
+L KP+ KL D +K++ T+
Sbjct: 581 AYLPKPV---KLTDFLKALQVTL 600
>gi|113474748|ref|YP_720809.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum
IMS101]
gi|110165796|gb|ABG50336.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum
IMS101]
Length = 1384
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 138/267 (51%), Gaps = 27/267 (10%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++A + K+ LA SH++R + A+IG+ L D + +D E + IR+
Sbjct: 657 ARDEALAATRAKSEFLATMSHEIRTPINAVIGMTGLLL-DTSLKSDQTEFVETIRSSGDA 715
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGS 500
LL ++N +++ SKIE+ K +L E F+L LEE +D+ ++G+++V +DP +
Sbjct: 716 LLTLINDILDFSKIESEKFDLEEHPFDLETCLEESIDLLVAKVSEQGLELVYFIDPETPT 775
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ V GD +++QIL NL+SN++KFTS+G + V + +K ++++
Sbjct: 776 I-----VIGDVTRVRQILVNLLSNAVKFTSDGEVLVSVSGRKLEIEENV----------- 819
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
L N D D + E +F V DTG GIP ++ N +F+ F QV +
Sbjct: 820 -QNLAVENISESDTCDIWPAYE-------IQFSVKDTGIGIPANRMNRLFKRFSQVDSST 871
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAI 647
G GLGL I + + +M G++ +
Sbjct: 872 NREYGGTGLGLVISKRLAEMMGGQMWV 898
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 77/138 (55%), Gaps = 22/138 (15%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
E PL + L+ +D + KV +L ++G + ++ NG E V + L
Sbjct: 1107 ELPL---RILLADDHLVNQKVALRILQRMGYRADLASNGLEVLAAVFR-----------L 1152
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEE---QYDVHIP-----IIALTAHAMAGVASKIV 1068
PYD ++MD +MP+M+G EA+R I++E E +Y P IIA+TA+ M G + +
Sbjct: 1153 PYDVVLMDVQMPLMDGLEASRHIQREYENATKYSQKSPQKRPRIIAMTANVMQGYREECI 1212
Query: 1069 DAGMDFHLTKPLQKDKLL 1086
AGMD +++KP+Q ++L+
Sbjct: 1213 AAGMDDYISKPIQIEELI 1230
>gi|254457369|ref|ZP_05070797.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|373867994|ref|ZP_09604392.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|207086161|gb|EDZ63445.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|372470095|gb|EHP30299.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
Length = 733
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 149/324 (45%), Gaps = 59/324 (18%)
Query: 349 FIAGVISLGLFIILIAKAAKREMFLCAALIKQ---------MNATEQAERKSMNKTFALA 399
++ +I +FI+L+A +L A IK + A E AE K LA
Sbjct: 180 YLQLIIYASIFILLMATL----FYLFAVKIKNNINTLSRELVEAKEIAEESVKTKAIFLA 235
Query: 400 KASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAG 459
SHD+R + +IG++ L T L ++ +K LL ++N +++ SK+EAG
Sbjct: 236 SMSHDIRTPMNGVIGMLGLLMNSKLDDTQ-KHQASLAKSSAKALLSLINDILDFSKVEAG 294
Query: 460 KMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILC 519
KM+L +FN+ L + + +KGV+++L+ D + ++ D +++QIL
Sbjct: 295 KMDLEYIDFNIRDELGDFAEGIAFRAQEKGVELILEVTD---IEQNMIKADPGRIRQILS 351
Query: 520 NLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALH 579
N+V NS+KFTSEG I+++A LD
Sbjct: 352 NIVGNSIKFTSEGFIAIKAI-----------------------------------LDVTE 376
Query: 580 SVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVH 639
P + E+ D+G GIP+DK +++F+ F QV + G GLGL IV+ +
Sbjct: 377 -----PTDARLIIEMSDSGIGIPEDKIDTLFDSFSQVDASTTRKYGGTGLGLAIVEKLCE 431
Query: 640 LMKGEIAIADKEPGERGVCFRFNV 663
LM G++ + K +G F ++
Sbjct: 432 LMNGKVEV--KSDFGKGSIFTIDI 453
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
+ P+ L+VED+ V + +L G + ++ NG EA + + +
Sbjct: 605 QDPIFESNILLVEDNITNQLVANGMLEDFGLEADIANNGIEALEML---------NSSSK 655
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEE--EQYDVHIPIIALTAHAMAGVASKIVDAGMDF 1074
Y+ I MDC+MP ++G+ AT+ IR E+ E+Y +IPIIA+TA+AM G K AGM
Sbjct: 656 KYNLIFMDCQMPELDGYGATQAIRAEQAGERY-TNIPIIAMTANAMQGDQEKCRSAGMSD 714
Query: 1075 HLTKPLQKDKLLDVV 1089
+L KP+ K+ L +++
Sbjct: 715 YLAKPIDKELLKNIL 729
>gi|386392260|ref|ZP_10077041.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385733138|gb|EIG53336.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 943
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 137/296 (46%), Gaps = 55/296 (18%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A QAE S K+ LA SH++R L+ IIGL ++ P ++ ENL +I S+
Sbjct: 433 RARRQAEAASRAKSDFLANMSHEIRTPLSGIIGLTQMTLSQ-GPRPEVRENLEMILDSSR 491
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LLGI+N +++ SKIEAGKME +F+L + L+ + + +KG+ + SV
Sbjct: 492 SLLGIVNDILDFSKIEAGKMEFSSVDFDLREALDRTMKPFQFSSRQKGLKL-------SV 544
Query: 502 LGSCHV----RGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ V GD ++ Q++ NLV N++KFT +G ++V
Sbjct: 545 RIASDVPEVLNGDPDRIMQVVRNLVGNALKFTDQGEVAVE-------------------- 584
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
FR + R + L E V DTG GIP+D+ +F+ F Q++
Sbjct: 585 --------FR-------------LLRPGDPLLVECSVRDTGIGIPEDRLPDLFQVFTQLE 623
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
+ G GLGL I + +V +M G I + + G F F V L E +R
Sbjct: 624 ASRTKRFGGTGLGLAISRRLVEMMGGTIGVESRS--NHGSTFSFTVSLRPAREEQR 677
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 12/134 (8%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G + L+ ED+ + L + G + + +G EA + + P D +
Sbjct: 693 GLRVLLAEDNQVNRLFLKHFLVEAGCEVRLAGSGGEALALLAQG-----------PVDLV 741
Query: 1022 MMDCEMPVMNGWEATRLIRKEE-EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+MD +MP M+G EATR IR E + +P++ALTA++M G + + AG+D +++KP+
Sbjct: 742 LMDIQMPEMDGTEATRRIRDGEVGEAARRLPVVALTAYSMKGDRERFLSAGLDDYVSKPV 801
Query: 1081 QKDKLLDVVKSIDE 1094
D+L V++ + E
Sbjct: 802 DVDELFMVMRRVLE 815
>gi|427723479|ref|YP_007070756.1| response regulator receiver modulated CheB methylesterase
[Leptolyngbya sp. PCC 7376]
gi|427355199|gb|AFY37922.1| response regulator receiver modulated CheB methylesterase
[Leptolyngbya sp. PCC 7376]
Length = 1250
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 137/276 (49%), Gaps = 45/276 (16%)
Query: 384 TEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDL 443
+++ + ++ K LA SH++R + AI+G EL E+ D AE L +I + + L
Sbjct: 863 SQKTQAANIAKDEFLANMSHEIRTPMTAILGFTELLQEELKDHPDTAEYLQIIYSSADSL 922
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLG 503
L ILN ++++SKIEAGK+ L E F+L QL ++ M+ +KG++ + + +
Sbjct: 923 LVILNDILDLSKIEAGKLRLKYETFSLPQLFADMEKMFIPKTNQKGLEFSMVVEEST--- 979
Query: 504 SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSK 563
V D V+L+QIL NL+SN++KFT++G + V A++ NV S+
Sbjct: 980 PEFVVFDEVRLRQILFNLISNAIKFTNQGSVQVTASI-------------HNVSSE---- 1022
Query: 564 LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH 623
+ NL + E+ DTG GIP Q IFE F Q + + +
Sbjct: 1023 --------------------DSNL---KLEIADTGIGIPVSDQERIFEAFTQREGQSTRN 1059
Query: 624 QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
G GLGL I + ++ G I + D E +RG F
Sbjct: 1060 YGGTGLGLHITSRLTEMLNGIICL-DSEV-DRGSKF 1093
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D I++D MP++NG EA ++K E D IPII LTAH G V + + K
Sbjct: 1177 DVILLDLLMPILNGAEAIARMKKMSELKD--IPIIILTAH--TGDIPAEVTPHISGFIRK 1232
Query: 1079 PLQKDKLLDVVKSI 1092
P + +L +++ I
Sbjct: 1233 PFKSKSILKILRKI 1246
>gi|409123289|ref|ZP_11222684.1| two-component system sensor histidine kinase/response regulator
hybrid [Gillisia sp. CBA3202]
Length = 628
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 140/281 (49%), Gaps = 47/281 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+AER +M KT + SH++R L +IGL + +D + ++L ++ +
Sbjct: 242 AKEEAERLTMLKTKFFSTISHELRTPLYGVIGLTSILMDDESLHKH-EDDLKSLKFSADY 300
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V++M+K+E+ ++L FNL +L+ +V + ++ + L+ C +
Sbjct: 301 LLALINDVLQMNKMESNLLDLEPMPFNLNELMRSIVKSFEFTRLQNKNSIHLELCKDA-- 358
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ ++ GD+V+L QIL NLV N+MKFT G I ++ + + S K+ S
Sbjct: 359 -NANLVGDKVRLSQILMNLVGNAMKFTERGDIWIKTQLIESSEKR--------------S 403
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
K++ FE+ D G GI K Q IFEEF Q++ +
Sbjct: 404 KIY--------------------------FEIKDNGSGISKHNQELIFEEFSQLQSSNYN 437
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+Q G GLGL IV+ ++ L E+ + +E GE G F F +
Sbjct: 438 YQ-GTGLGLPIVKKLLILFNSEVNLVSEE-GE-GSTFSFTI 475
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 69/127 (54%), Gaps = 15/127 (11%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K+ LVV+D+ I VT +L + ++C NG +A + V K P++ ++
Sbjct: 507 KRILVVDDNRINQVVTKRILEQQQFVVDICDNGIDAIERV-----------KLHPFELVL 555
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MD MP ++G EAT+ IR +++ ++PIIALTA + + +I +AG++ + KP
Sbjct: 556 MDVNMPGISGLEATKRIR----EFNKNLPIIALTAMEIDEIREEIFEAGLNDIIVKPYDT 611
Query: 1083 DKLLDVV 1089
+ V+
Sbjct: 612 ARFYQVI 618
>gi|355640249|ref|ZP_09051668.1| hypothetical protein HMPREF1030_00754 [Pseudomonas sp. 2_1_26]
gi|354831461|gb|EHF15476.1| hypothetical protein HMPREF1030_00754 [Pseudomonas sp. 2_1_26]
Length = 786
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 170/363 (46%), Gaps = 70/363 (19%)
Query: 321 YVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCAAL 377
Y+LA+ + L LV+ L L L F + V+ +G+ + L+ + A R L
Sbjct: 201 YILAWGALLLSFLVTTAASLGFELFGL-FGSSVVKIGMTVELVTLSIGLADRINALKEEG 259
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+ A EQA ++ K+ LAK SH++R L ++G+++L D A + I
Sbjct: 260 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLR-DTPLDRGQAAYVETIA 318
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----------YHVGIK 487
+ L+ ++N +++ ++IE+GK+ L +F+L +LL + + ++ H+G+
Sbjct: 319 SSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLD 378
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+GV L+ GD +L+Q+L NL+SN++KFT+EGH++VR V+++
Sbjct: 379 RGVPRRLN-------------GDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQRR---- 419
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
FD+ ER + + D+G GI Q
Sbjct: 420 ------------------------FDE----GGRER------LLYSISDSGIGISAQAQK 445
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
++FE F Q + G GLGL I + +V +M G I ++ EPG +G F ++ L+
Sbjct: 446 TLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS-SEPG-KGTRFSVDLPLSP 503
Query: 668 VCE 670
+
Sbjct: 504 ALD 506
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 915 QHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQ---SDGKCSE----KPLNGKKFLV 967
QHC D P L+ ++ + +L ++ + G+ SE + L+ LV
Sbjct: 602 QHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERLDAPCILV 661
Query: 968 VEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM 1027
ED+ + V L K G + NG+ A D + + ++ I+MD EM
Sbjct: 662 AEDNPVNQLVVRGFLAKRGYAVRLTGNGRLALDEYLRDPNGIQ---------LILMDGEM 712
Query: 1028 PVMNGWEATRLIRKEEE-QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
P M+G+EATRLIR+EE Q +PI+ALTAH + ++AGMD +L KP+ + +L
Sbjct: 713 PEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAELY 772
Query: 1087 DVVKSI 1092
++ +
Sbjct: 773 ATLERL 778
>gi|374585381|ref|ZP_09658473.1| multi-sensor hybrid histidine kinase [Leptonema illini DSM 21528]
gi|373874242|gb|EHQ06236.1| multi-sensor hybrid histidine kinase [Leptonema illini DSM 21528]
Length = 795
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 136/289 (47%), Gaps = 49/289 (16%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L AI+G L D +N+ +I LL ++N V++M
Sbjct: 346 KSVFLASMSHELRTPLNAILGFSRLLQSDRTLPDHTRKNVEIINRSGTHLLRLINDVLDM 405
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
+KIE+G M+L + F+L +LL +V D+ +KG+ +++D D + ++ D +
Sbjct: 406 AKIESGSMQLQKAPFDLGELLCDVTDLMRQRAEEKGLQLIIDQ-DSTF--PRYIVADEGR 462
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
++QIL NL+ N++KFT +G +++R ++ +
Sbjct: 463 VRQILINLIGNAVKFTEQGGVTLRLGTRENT----------------------------- 493
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
L + EV+D+GKGI ++ IFE FVQ+ + H G GLGL I
Sbjct: 494 -------------LSHLQIEVEDSGKGIAPEECRRIFEPFVQLGDQGGSH--GTGLGLAI 538
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPR 682
+ V LM G I++ E+G FR + L E + +E + R
Sbjct: 539 TKQYVELMGGSISVTSSP--EKGSVFRVELPLEEAKEDDIQRANEAEQR 585
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED + ++ +G + NG+E ++ R P+ +I M
Sbjct: 597 RILIVEDQRDNQLLLQTLMENIGLSVRIASNGEEG----VRLFESYR------PH-FIWM 645
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM+G EAT+ IR DV I+A+TA A A +++ G+D + KP +
Sbjct: 646 DRRMPVMDGIEATKKIRSLPGGADVR--IVAVTASAFAEQRDEMLAVGLDDFVRKPYRPA 703
Query: 1084 KLLD 1087
++ D
Sbjct: 704 EIYD 707
>gi|334340222|ref|YP_004545202.1| PAS sensor protein [Desulfotomaculum ruminis DSM 2154]
gi|334091576|gb|AEG59916.1| PAS sensor protein [Desulfotomaculum ruminis DSM 2154]
Length = 1276
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 135/269 (50%), Gaps = 46/269 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVE-LCHEDANPGTDLAENLGLIRTCS 440
A E AE+ S K+ LA SH++R + I+G E L + N + E++ +IR C
Sbjct: 531 QAREIAEKASQAKSEFLANMSHEIRTPMNGILGFAEVLAQQGLN--QEQQESVKIIRQCG 588
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD--VVLDPCD 498
+ L+ ++N ++++SKIE+GK+ L E F+L +++ E V++ + ++K V+ + +DP
Sbjct: 589 EQLMDLINDILDLSKIESGKLILEETVFSLRKMIYETVNVIEPILMEKNVEMKISIDPHL 648
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
+++GD +++QIL NL+SN+ KFT EG + V+ ++ K D +RN +
Sbjct: 649 PD-----YLKGDSFRIRQILNNLLSNAAKFTHEGCVEVKVQGERTLEKTD----HRNFV- 698
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
F V DTG GIP DK IFE F Q
Sbjct: 699 -------------------------------LTFIVSDTGIGIPSDKLAEIFETFTQADG 727
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
+ G GLGL I +S+ LM G++ +
Sbjct: 728 STTRKYGGTGLGLTISRSLTELMGGQLQV 756
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 82/150 (54%), Gaps = 20/150 (13%)
Query: 952 DGKCSEKPLNGK------KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKI 1005
DG KP+N K L+VED++ K+ +L G K + NG+EA +
Sbjct: 1037 DG-VQRKPVNQKMKKGPVNVLLVEDNSFNQKLIEHLLTGDGYKVTMVENGQEALAAL--- 1092
Query: 1006 LSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVAS 1065
+G+ YD ++MD +MPVM+G+EATR IR E+ +P+IALTAHAM G
Sbjct: 1093 -----DQGE---YDIVLMDMQMPVMDGYEATRQIRNMEKYK--KLPVIALTAHAMKGDCE 1142
Query: 1066 KIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095
K + AG D +L KP+ KD L+ +K ++
Sbjct: 1143 KCLSAGCDDYLAKPVNKDMLIKTIKKFTDS 1172
>gi|428317805|ref|YP_007115687.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428241485|gb|AFZ07271.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1731
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 132/263 (50%), Gaps = 30/263 (11%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L ++G ++ D + +D E+L I C + LL +++ V+++
Sbjct: 1232 KSEFLANMSHELRTPLNGVLGYTQILKTDKDLNSDQQESLSNILQCGQHLLMLIDDVLDL 1291
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEA KMEL EE N ++ + D++ +K +++ S L SC VR D +
Sbjct: 1292 SKIEARKMELYPEELNFINFMKNIADLFQMRASQK--EILFHYEQVSPLPSC-VRVDPKR 1348
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAV---------KKKSFKQDIIASNRNVISKCLSKL 564
L+QIL NL+SN++KFTS G ++ + + +S+K ++S L +
Sbjct: 1349 LRQILINLLSNAVKFTSSGGVTFKVGYVGTGAWSLGQGESYKFSTLSSE-------LKQN 1401
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
+ R H+ + L+ F+V+DTG GI + K IF F QV
Sbjct: 1402 YMR---------FAHNAIAAKHALKIRFQVEDTGTGIERSKLEEIFLPFHQVGGNTF--V 1450
Query: 625 EGLGLGLGIVQSMVHLMKGEIAI 647
EG GLGL I Q + LM EI +
Sbjct: 1451 EGTGLGLSISQKLAKLMGAEIRV 1473
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
N +K L+VED+ + + +L +LG + +NG+E +CK + D
Sbjct: 1513 NKRKVLIVEDNQLDRDLLCRLLRRLGFEVAEAQNGQEC---LCKTVE--------FQPDV 1561
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MD MPVM+G E R +R+ E DV ++A++A A + AG D L KP+
Sbjct: 1562 ILMDLRMPVMDGLETARKLRQLPEGKDV--VLMAMSASVFAATQQDSILAGYDDFLPKPI 1619
Query: 1081 QKDKLLDVVK 1090
+ + L+ ++
Sbjct: 1620 EANHFLEQLR 1629
>gi|149370174|ref|ZP_01890025.1| Signal transduction histidine kinase-like protein [unidentified
eubacterium SCB49]
gi|149356665|gb|EDM45221.1| Signal transduction histidine kinase-like protein [unidentified
eubacterium SCB49]
Length = 728
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 157/327 (48%), Gaps = 47/327 (14%)
Query: 345 LVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHD 404
+ L+ I +++L L+ I KA + + Q A E+AE+ S+ K L+ SH+
Sbjct: 306 VTLIVILSLLTLSLYKINNLKAKANNLLIQKNSELQA-AKEKAEKASVAKAQFLSTVSHE 364
Query: 405 VRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELV 464
+R L A+ GL L D NP E+L ++ + LL ++N++++++K+EA K E+
Sbjct: 365 LRTPLYAVTGLTHLLL-DENPEPKQKEHLDSLKFSGEYLLSLINNLLDLNKLEAKKTEVE 423
Query: 465 EEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSN 524
FNL + + +V+D + K V LD D + + GD +KL QIL NL+ N
Sbjct: 424 YLTFNLEKQIRDVIDALKNSAQDKNNKVTLD-FDNEL--PDKIVGDPIKLSQILMNLIGN 480
Query: 525 SMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERN 584
S+KFT G +++R +N E DD +N
Sbjct: 481 SLKFTQNGFVTIRVK---------------------------KNNE--DD--------KN 503
Query: 585 PNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGE 644
N+ +FE++D G GI K K+++IFE F Q G GLGL IV++++ LM +
Sbjct: 504 INI---KFEIEDNGIGISKKKRSTIFESFSQGSLQVNRKYGGTGLGLSIVKNILKLMNSD 560
Query: 645 IAIADKEPGERGVCFRFNVLLTAVCER 671
I + + +G F FN+ +R
Sbjct: 561 IHL--ESTLGQGSKFWFNITFKKHIDR 585
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
KK LVVED+ I +T +L K ++ NG +A + K ++ +
Sbjct: 605 NKKILVVEDNKINQMITRKILEKHHVNCQIIDNGVDAIKLIEKN-----------SFEVV 653
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+MD MP ++G E T+L+RK +D PI+ALTA + +AG + + KP
Sbjct: 654 LMDIHMPGISGIETTQLVRK----FDKKTPILALTAVTADENKEEFYNAGFNDIIPKPF 708
>gi|218441977|ref|YP_002380306.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
gi|218174705|gb|ACK73438.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
Length = 1058
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 137/281 (48%), Gaps = 48/281 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+AE + K+ +A SH++R L AI+G +L + + EN+ +I +
Sbjct: 591 AKEKAEVANQAKSRFIANMSHELRTPLNAILGFSQLMNRSTTLPPEHQENIQIINRSGEY 650
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N+++ ++KIEAGK L F+L LL E+ +++Y KK +++ + D ++
Sbjct: 651 LLTLINNILTLAKIEAGKTSLNLSNFDLYSLLNEIEEIFYLAAKKKNLNLTFE-RDKTI- 708
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++R D VKL+++L NL+SN++KFT G DI+ + + K ++
Sbjct: 709 -PQYIRTDEVKLREVLINLLSNAIKFTPRG---------------DILVDVQTLSQKPIT 752
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
L F V DTG GI ++ + +F+ F Q ++
Sbjct: 753 LL---------------------------FTVKDTGVGITPEELDILFDAFSQT-QSGKN 784
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
QEG GLGL I + V LM GE+ + + G FRF +
Sbjct: 785 SQEGTGLGLAISRQFVELMGGELTVDSQ--IAVGTIFRFTL 823
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 25/130 (19%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K LVV+D ++ +L +G + NG+EA + L I M
Sbjct: 853 KILVVDDKQTNRQLLIKLLTSVGFTVKEACNGQEAIEIWESWQPHL-----------IWM 901
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIP------IIALTAHAMAGVASKIVDAGMDFHLT 1077
D MP+M+G+EAT+ I+ IP IIA+TA + + ++ AG D +
Sbjct: 902 DMRMPIMDGYEATKFIKS--------IPKGKNTVIIAITASVLEEEKAVVLSAGCDDFVR 953
Query: 1078 KPLQKDKLLD 1087
KP + + +
Sbjct: 954 KPFLESTIFE 963
>gi|414878942|tpg|DAA56073.1| TPA: putative histidine kinase family protein [Zea mays]
Length = 1007
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 165/334 (49%), Gaps = 30/334 (8%)
Query: 352 GVISLGLFIILIAKAAKREMFLCAALIKQMNA-TEQAERKSMNKTFALAKASHDVRASLA 410
G + + L I I A + + ++M+ ++AE + K+ LA SH++R +
Sbjct: 380 GTLVIALLIGYIVHATAKRIARVEDDFQEMSLLKKRAEDADIAKSQFLATVSHEIRTPMN 439
Query: 411 AIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNL 470
++G++++ D + T + + + K L+ ++N V++ +KIE+GK+EL F+L
Sbjct: 440 GVLGMLQMLM-DTDLDTTQQDYVRTAQASGKTLVSLINEVLDQAKIESGKLELEVVPFDL 498
Query: 471 AQLLEEVVDMYYHVGIKKGVDV---VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMK 527
+ ++++ ++ +KG+++ V D +++G D +++QI+ NLV NS+K
Sbjct: 499 RTVCDDILSLFCGKAQEKGLELAVFVSDQVPQTLIG------DPGRIRQIITNLVGNSIK 552
Query: 528 FTSEGHISVRAAVKKK---SFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERN 584
FT +GHI + V ++ + + N +S R+ E F L S E N
Sbjct: 553 FTEKGHIYLTVHVVEEIMHCLEVETGTQYTNTLSGYPVANRKRSWENF----RLFSRELN 608
Query: 585 PNLLQFE----------FEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIV 634
+ + F V+DTG GIP D Q+ +F F+QV + G G+GL I
Sbjct: 609 SSEMPFAPIASDSISLMISVEDTGAGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSIS 668
Query: 635 QSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
+ +V LMKGEI + K + G F F +LT V
Sbjct: 669 KCLVGLMKGEIGFSSKP--QVGSTFTFTAVLTRV 700
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 27/143 (18%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L+ K+ +VV+D+ + LKV + L K GA+ +GKEA ++ L+ +D
Sbjct: 860 LHKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEA-------ITLLKPPHN---FD 909
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHI-----------------PIIALTAHAMAG 1062
MD +MP M+G+EAT+ IR E + I PI+A+TA +
Sbjct: 910 ACFMDIQMPEMDGFEATKRIRVMERDLNEQIERGEAPPECVGVRQWRTPILAMTADVIQA 969
Query: 1063 VASKIVDAGMDFHLTKPLQKDKL 1085
+ + + MD +++KP + ++L
Sbjct: 970 THEQCLKSEMDGYVSKPFEGEQL 992
>gi|444914934|ref|ZP_21235073.1| periplasmic sensor hybrid histidine kinase [Cystobacter fuscus DSM
2262]
gi|444714211|gb|ELW55098.1| periplasmic sensor hybrid histidine kinase [Cystobacter fuscus DSM
2262]
Length = 874
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 147/327 (44%), Gaps = 52/327 (15%)
Query: 352 GVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAA 411
GV++L + I + + A+ L + A + AE ++ K+ LA SH++R L
Sbjct: 372 GVLALSINI-MTQRLAETIGHLETVFAEARRAKDAAETANLAKSTFLAHMSHELRTPLNG 430
Query: 412 IIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLA 471
I+G ++ D G + +I+ + LL ++N +++ +KIEAGK+EL + LA
Sbjct: 431 ILGYAQILRRDKKLGEREIAGVNVIQQSGEHLLTLINDILDFAKIEAGKLELYATDLQLA 490
Query: 472 QLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE 531
+ L + +M +KG+D + CD VR D +L+Q+L NL+SN++KFT
Sbjct: 491 RFLRTITEMISVRAAQKGLDFI---CDLPPDLPAWVRADEKRLRQVLLNLLSNAVKFTDS 547
Query: 532 GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFE 591
G VR +V+ F D +
Sbjct: 548 GQ--VRLSVR------------------------------FTPPD------------RIR 563
Query: 592 FEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651
FEV DTG GI +D+ +F+ F QV E A Q G GLGL I + V LM +I + +
Sbjct: 564 FEVQDTGIGISEDQLGILFQPFEQVGE-ARRRQGGTGLGLAISRQFVRLMGADIQVESR- 621
Query: 652 PGERGVCFRFNVLLTAV-CERERPDTD 677
+G F F + L V E P D
Sbjct: 622 -AGQGSTFWFELELPVVKVEMAAPPPD 647
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 944 LQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVC 1003
++ A DG + KK LVV+D A + +LG+LG + NG+E D
Sbjct: 639 VEMAAPPPDGVVTGYQGPRKKVLVVDDVAGNRAMVVELLGRLGFEVTEAENGREGLD--- 695
Query: 1004 KILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGV 1063
+ + L D I+MD MPVM+G EAT IR+ Y +PI+A++A A
Sbjct: 696 --------KARILQPDLILMDTMMPVMDGMEATHRIRQLP--YGRDVPILAVSASAAQDD 745
Query: 1064 ASKIVDAGMDFHLTKPLQKDKLL 1086
+ + AG + + KP+ LL
Sbjct: 746 RDRSLAAGANAFIAKPIDYGVLL 768
>gi|153833582|ref|ZP_01986249.1| MmoS [Vibrio harveyi HY01]
gi|148870109|gb|EDL69056.1| MmoS [Vibrio harveyi HY01]
Length = 641
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 164/369 (44%), Gaps = 56/369 (15%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A ++AE + K+ LA SH++R + IIG+ L D + + +I + S
Sbjct: 232 QARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLLG-DTKLDEQQKDFVSIINSSSN 290
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
L+ I++ +++ SKIEAGK+EL +NL LL EV ++ +KG+ +V CD
Sbjct: 291 SLMVIIDDILDFSKIEAGKIELEATTYNLLDLLHEVGRLHTVKAQQKGLQLV---CDIDP 347
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
V+GD +LKQ+L NL+SN++KFT GH+ + +
Sbjct: 348 QLPLEVKGDMGRLKQVLSNLLSNAVKFTERGHVKLMVS---------------------- 385
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
V R ++ F V D+G GI K+ Q ++FE+F Q +
Sbjct: 386 ------------------QVSREADVAGVHFRVVDSGIGIAKENQQTVFEKFQQADGSTT 427
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDP 681
G GLGL I S+V +M GEI + EPG G F F + L V ++ P
Sbjct: 428 RKYGGTGLGLAICSSLVEVMGGEIRLT-SEPG-LGSYFEFTIPLNIVSDKSI------SP 479
Query: 682 RTHN--DWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIV 739
+T N D+P G+ + K G IL + + + R + L ++V +
Sbjct: 480 QTPNVFDFP-NGMSNAIVAEHIQTTKDVGKPWILVVEDTAVNQKVVRMMLEKLGMQVNVA 538
Query: 740 KQ-EKNLHQ 747
+ E L Q
Sbjct: 539 EHGEDALRQ 547
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 73/125 (58%), Gaps = 13/125 (10%)
Query: 962 GKKF-LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
GK + LVVED A+ KV +L KLG + V +G++A ++ + +D
Sbjct: 507 GKPWILVVEDTAVNQKVVRMMLEKLGMQVNVAEHGEDAL-----------RQCQTHQFDL 555
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MDC+MPVM+G+ AT IRK E + +PIIAL+A+ + + DAGM+ + KP+
Sbjct: 556 ILMDCQMPVMDGFIATENIRKMGE-WGQQVPIIALSANVIKEDQQRCFDAGMNEFVAKPV 614
Query: 1081 QKDKL 1085
K++L
Sbjct: 615 TKERL 619
>gi|418720544|ref|ZP_13279742.1| 7TM diverse intracellular signaling [Leptospira borgpetersenii str.
UI 09149]
gi|410743522|gb|EKQ92265.1| 7TM diverse intracellular signaling [Leptospira borgpetersenii str.
UI 09149]
Length = 822
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 150/313 (47%), Gaps = 49/313 (15%)
Query: 360 IILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC 419
IIL+ K ++ LI+ A E AE+ S K+ LA SH++R + ++G+V+L
Sbjct: 406 IILLKKEIQQRRETEWELIQ---AKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLL 462
Query: 420 HEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVD 479
+ E + ++ +K LL I+N +++ SKIEAGK+ L +E F++ +L+E+ D
Sbjct: 463 G-TTKLNDEQKEYIQILSISAKSLLQIINDILDFSKIEAGKISLDKEVFSIHSVLDEIHD 521
Query: 480 MYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAA 539
+ Y + +K + + L+ D S + +V GD+++L+QIL NL N +KFT+ G + +
Sbjct: 522 LLYPLAKQKRIGLRLE--DKSEIQE-YVYGDQLRLRQILWNLTGNGIKFTNHGEVVL--- 575
Query: 540 VKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGK 599
NV K +SK + + +F V D+G
Sbjct: 576 ---------------NVSQKNISK----------------------DKISIKFTVSDSGI 598
Query: 600 GIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
GIP +KQ +F+ F Q + G GLGL I + +V L G + + KE G F
Sbjct: 599 GIPLEKQKQVFDAFSQSDTSTARKFGGSGLGLSITKQLVELQGGTLNLESKE--SYGSKF 656
Query: 660 RFNVLLTAVCERE 672
F + E E
Sbjct: 657 TFTITYDIPSESE 669
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K LV ED+ + L KLG V NG+E + K+ D +D I+M
Sbjct: 695 KILVAEDNETNCLLIERALKKLGYDPVVVHNGREVIE---KMQLDF--------FDMILM 743
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D MP ++G EAT+ IR +++ + I IIALTA + + GM+ +LTKPL
Sbjct: 744 DIHMPEVDGIEATKWIRSQKQNTEFPI-IIALTADVIESNKEVYISKGMNDYLTKPL 799
>gi|88799412|ref|ZP_01114990.1| hypothetical tryptophan-rich sensor protein [Reinekea blandensis
MED297]
gi|88777951|gb|EAR09148.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297]
Length = 888
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 138/287 (48%), Gaps = 56/287 (19%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
NA + AE+ ++ K+ LA SH++R L AIIG EL +++N T + +L I + S+
Sbjct: 515 NAQQAAEQATIAKSQFLANMSHEIRTPLNAIIGFAELAQDESNLMT-IQSHLKGISSSSE 573
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD---PCD 498
LLG++N V++ SK+EAGK+EL F+L +L + + ++ +G+ +D P +
Sbjct: 574 ALLGLVNDVLDYSKLEAGKLELHRAPFSLQELAKRLRSIFETQARARGLSFRIDVDCPAN 633
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
++ D +L+QIL NL SN++KFT G I V+ V ++ Q ++
Sbjct: 634 KDIV------SDETRLQQILINLCSNAIKFTRHGDIHVQMQVLEEQETQLMLV------- 680
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
V DTG G+ + ++ IF++F Q
Sbjct: 681 -----------------------------------VKDTGIGMTESERARIFDQFTQADS 705
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ H G GLGL I ++ L+ G++ + E+GV +F + L
Sbjct: 706 SITRHYGGTGLGLSITMTLTELLDGQVMVE----SEQGVGSQFTIRL 748
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 13/125 (10%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
+ + LVV+D+A+ LKVT A+L K G + ++ G++A D + + DL
Sbjct: 767 DNYRILVVDDNAVNLKVTRALLRKSGFQVDIASRGEDAIDSIRASVPDL----------- 815
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
++MD +MP M+G TRL+R++ + H+ II LTA+ +DAGM+ +LTKP+
Sbjct: 816 VLMDIQMPGMDGLATTRLLRQDPDFR--HLVIIGLTANVSKEDRQACLDAGMNDYLTKPI 873
Query: 1081 QKDKL 1085
KL
Sbjct: 874 SLLKL 878
>gi|428217642|ref|YP_007102107.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427989424|gb|AFY69679.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 1017
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 133/271 (49%), Gaps = 7/271 (2%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A+E AE ++ K+ LA SH++R L I+G ++ + +I C
Sbjct: 489 ASEAAESANLAKSEFLANMSHELRTPLNGILGYTQILQRSQTMTDKEQHGINVIHHCGNH 548
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V+++SKIEA +MEL + FN L+ VV++ +KG+ +V P +
Sbjct: 549 LLTLINDVLDLSKIEARRMELFPKHFNFRSFLQGVVEISMVRAEQKGIKLVYAPAPDLPI 608
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
V D +L+Q+L NL+ N++KFT +G +++ + K+ +N+ LS
Sbjct: 609 A---VVADEKRLRQVLLNLLGNAIKFTDQGTVTLTVRRVEPDHKKGHPPANQQQQVDNLS 665
Query: 563 K---LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
K ++ D L P + Q F+++DTG G+ ++ +IF F QV E+
Sbjct: 666 SDPPPIESYKGNSNNTDPLPDNGDRPIVSQLRFQIEDTGVGMGTEQLETIFLPFEQVGES 725
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
EG GLGL I +V +M I +A +
Sbjct: 726 T-RKAEGTGLGLSISLKIVEMMGSTIQVASQ 755
Score = 46.2 bits (108), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K +VV+D V +++L +G + NG++A DL I+
Sbjct: 795 KIMVVDDKWENRSVVTSMLAPIGFEMLEAENGEQALAIALANKPDL-----------IIT 843
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MPVM+G++ +R+ E+ + + I +A K +DAG D + KP+Q
Sbjct: 844 DLMMPVMDGFQLLSAVRQSEQLSSIQV--IVSSASVFDADQQKSLDAGADDFIPKPVQST 901
Query: 1084 KLLDVVKS 1091
+LL ++S
Sbjct: 902 ELLQQLQS 909
>gi|389578240|ref|ZP_10168267.1| signal transduction histidine kinase [Desulfobacter postgatei 2ac9]
gi|389399875|gb|EIM62097.1| signal transduction histidine kinase [Desulfobacter postgatei 2ac9]
Length = 808
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 130/278 (46%), Gaps = 44/278 (15%)
Query: 369 REMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTD 428
R + L A+ + + QA+ + +K+ LA SH++R + ++G+VEL D D
Sbjct: 255 RTVKLQKAMERAVTLAHQAQAANRSKSMFLANMSHEIRTPMNGVLGMVELLM-DTPLTRD 313
Query: 429 LAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKK 488
+ + I+ LL I+N +++ +KIEAGK+ L NL L+ E VD+ K
Sbjct: 314 QKKLINTIKVSGDSLLLIINDILDFTKIEAGKLTLESRPCNLESLVRETVDIIAGQAESK 373
Query: 489 GVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQD 548
G+ +++D LGS V D ++++Q+L NL SN++KFTS+G I VR
Sbjct: 374 GLTLIVDIGQ---LGSPFVNADPLRIRQVLLNLFSNALKFTSKGTIRVR----------- 419
Query: 549 IIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNS 608
+ ++E + F V DTG G+ KD +
Sbjct: 420 -----------------------------VQTLEEKNAFTKVGFAVKDTGIGMEKDVCDR 450
Query: 609 IFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIA 646
+F+ F Q E+ G GLGL I + +V LM G I+
Sbjct: 451 LFKPFTQADESTTREFGGTGLGLAISKQLVELMGGRIS 488
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 74/133 (55%), Gaps = 13/133 (9%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
P LVVED+ I +V+S +L LG + ++ NG++A V K Y
Sbjct: 542 PEKAPLVLVVEDNTINQEVSSGILKNLGCRVDLAPNGEKALAAV-----------KDKSY 590
Query: 1019 DYIMMDCEMPVMNGWEATRLIRK--EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
D I MDC+MPVM+G++ TR IR + +P+IALTAHA+AG K + AGMD HL
Sbjct: 591 DIIFMDCQMPVMDGYDTTRRIRAMGSISRSGGELPVIALTAHALAGDRVKCIKAGMDDHL 650
Query: 1077 TKPLQKDKLLDVV 1089
KP K ++ V+
Sbjct: 651 AKPFSKFQMATVL 663
>gi|350564428|ref|ZP_08933246.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium aerophilum
AL3]
gi|349777906|gb|EGZ32268.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium aerophilum
AL3]
Length = 1511
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 140/282 (49%), Gaps = 47/282 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A +QAE S+ K+ LA SH++R + IIGL EL ++ + + L E L I +
Sbjct: 907 AKQQAEASSLAKSAFLANMSHEIRTPMNGIIGLSELALQEQSV-SKLHEKLNKIHRSGRL 965
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG-VDVVLDPCDGSV 501
LLG++N V++ SKIEAGK+EL + F++ +++++ ++ G++ G V +L D S
Sbjct: 966 LLGVINDVLDFSKIEAGKLELQTDAFSIHHVVDDISHLFM-TGVQDGQVQFML---DDSA 1021
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+ H D ++L+Q+L NL+ N+ KFT +G ++ +
Sbjct: 1022 MVHSHFCADELRLRQVLLNLLGNAFKFTEQG-----------------------IVKLTI 1058
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
S+ H+ E+ L +F V DTG GI K +Q +IFE F Q +
Sbjct: 1059 SE---------------HNDEQGQAWL--DFIVSDTGLGISKQQQTAIFEPFQQADTSIT 1101
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I Q +V LM G + + GE G F F++
Sbjct: 1102 RQYGGTGLGLVISQRLVSLMDGVGIHLESDLGE-GSKFSFSI 1142
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 16/130 (12%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
NG+ L+VED+ I +V L L + NG++A D L +E + +D
Sbjct: 1168 FNGQ-VLLVEDNEINQEVILNQLDHLNLDVVLAENGQQAVD--------LVREHR---FD 1215
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MD +MP+M+G++ATR IR ++D PI+ALTA AM K + AGM+ HL+KP
Sbjct: 1216 LILMDIQMPIMDGYQATRAIR----EFDSDTPIVALTAAAMIEDKKKALAAGMNEHLSKP 1271
Query: 1080 LQKDKLLDVV 1089
+Q +L ++
Sbjct: 1272 IQLQELRSLI 1281
>gi|374301158|ref|YP_005052797.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
gi|332554094|gb|EGJ51138.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
Length = 848
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 145/300 (48%), Gaps = 46/300 (15%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A +AE + K+ LA SH++R L A++GL E P + E + +I+ +
Sbjct: 358 QAKREAEESNRAKSEFLANMSHEIRTPLNAVLGLAERLSFITEP-RERDEYVRMIKHSAH 416
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL I++ ++++SKIEAGK+++ E+EF LA LLE+VV Y + +KG+++ + G+
Sbjct: 417 ALLAIIDDILDLSKIEAGKLDVHEQEFELAALLEKVVSPYRYQAQEKGLELAV--SVGNA 474
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+ + + D K Q+L NLVSN++KFT EG + +I +N N S+ +
Sbjct: 475 VPAWML-ADPDKFSQVLTNLVSNAIKFTEEGSV-------------EISVTNDNRDSRDM 520
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
L V DTG GIP D Q +F F Q+ +
Sbjct: 521 GLLVC---------------------------VHDTGLGIPWDMQARLFNSFSQLDSSYS 553
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDP 681
G GLGL I + +V ++ G I + + PG +G F F + + +V + +P P
Sbjct: 554 KSFGGTGLGLAISKRLVEMLGGRIWV-ESMPG-KGSSFSFTLPIASVSKPAQPAPPTSSP 611
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 11/121 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L+ ED+ I +G ++ NG+ +L LR + PYD I+MD
Sbjct: 622 LLLAEDNRINQFFLKDYFEAMGHSVDIAENGR-------LVLEKLRSK----PYDLILMD 670
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
+MP M+G EATR+IR ++ IPI+ALTA+A++ SK ++AGMD ++ KP+ ++
Sbjct: 671 IQMPHMDGLEATRIIRSSNDEPWADIPIVALTAYALSQDRSKAMEAGMDAYVLKPINFEE 730
Query: 1085 L 1085
L
Sbjct: 731 L 731
>gi|94264858|ref|ZP_01288633.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93454679|gb|EAT04944.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 701
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 154/329 (46%), Gaps = 54/329 (16%)
Query: 322 VLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQM 381
+L + N + ++++ + L L L+FIA +GL + ++A + + A +I+ M
Sbjct: 145 LLTKEINNITAIINSRHAADLKRLNLIFIA----VGLLMTVVA-VLNAWLIIPALVIRPM 199
Query: 382 N-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
T+QAE + K+ LA SH++R + ++G+ L D + G+I+
Sbjct: 200 QRVTDQAEAANAAKSEFLANMSHEIRTPMNGVLGMTTLLM-DTGLNREQRHLAGIIQASG 258
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCD 498
+DLL ++N +++ SKIEAG+++L +F+L +LL+ K + ++ LDP
Sbjct: 259 EDLLRVINDILDFSKIEAGQLDLEVIDFDLQELLDNFAAAMAIPARAKKLALIGELDPAT 318
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
L RGD +++QIL NLV N++KFT +G +++
Sbjct: 319 PRFL-----RGDPGRIRQILTNLVGNAIKFTEQGEVALH--------------------- 352
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
FD + E +P L V DTG GIP DK++ +F+ F Q
Sbjct: 353 -------------FD------ATEHSPERLTLRCRVRDTGIGIPADKRDRLFKSFSQADS 393
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
+ G GLGL I + + M G I++
Sbjct: 394 STTRQYGGTGLGLAIAKQLAEKMAGAISV 422
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ V +L KLG + + NG+EA + + K PYD ++M
Sbjct: 468 RILLAEDNPTNQLVALGILKKLGLRADAVGNGEEAVEAL-----------KNRPYDLVLM 516
Query: 1024 DCEMPVMNGWEATRLIRKEE-EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D +MPV++G EATR IR E + IPIIALTA A+ A AGM+ + KP++
Sbjct: 517 DLQMPVLDGMEATRRIRNPEGGAINPAIPIIALTASALPSDAEACFAAGMNGFVPKPIEP 576
Query: 1083 DKL 1085
L
Sbjct: 577 SVL 579
>gi|430744391|ref|YP_007203520.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
gi|430016111|gb|AGA27825.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
Length = 1159
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 141/291 (48%), Gaps = 55/291 (18%)
Query: 377 LIKQMNAT-EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA----E 431
LI ++ T E+A S K LA SH++R + AIIG+ L + TDLA +
Sbjct: 390 LIVELEKTREEAVEASRAKGDFLANMSHEIRTPMNAIIGMSHLALQ-----TDLAPKQRD 444
Query: 432 NLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD 491
L I +K LL I+N +++ SKIEAG++++ EFNL +L+ V + +KG++
Sbjct: 445 YLKKIDGSAKALLRIINDILDFSKIEAGRLDMEAAEFNLEDVLDSVATLITPKAEEKGLE 504
Query: 492 VVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIA 551
V+ G L H+ GD ++L QIL NL NS+KFT +G I + + +K+ +Q ++A
Sbjct: 505 VLFRTEPGLPL---HLVGDSLRLGQILINLAGNSVKFTEQGEIVISTQLVEKTEEQAVLA 561
Query: 552 SNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFE 611
F V DTG G+ ++ +F+
Sbjct: 562 ----------------------------------------FSVRDTGIGMTAEQAGKLFQ 581
Query: 612 EFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
FVQ + G GLGL I + +V +M G+I++ + EPG +G F F
Sbjct: 582 PFVQADSSTTRKFGGTGLGLSISKQLVEIMGGQISV-ESEPG-KGSVFDFT 630
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 13/130 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
+ G + LV ED+ I +V +L G ++ NG+EA + V +A PYD
Sbjct: 800 IRGSRVLVAEDNEINQQVAREILESAGLVVDIAANGREAVELV-----------RANPYD 848
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MP ++G +AT +R + D +PIIA+TAHAMAG + + AGMD H+TKP
Sbjct: 849 AVLMDIQMPELDGLQATVELRGDGRYRD--LPIIAMTAHAMAGDREQSLKAGMDDHVTKP 906
Query: 1080 LQKDKLLDVV 1089
+ D L V+
Sbjct: 907 IDPDVLFAVL 916
Score = 53.1 bits (126), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G + LVV+D ++ + L + + V G EA + + + R P+D
Sbjct: 650 LQGLRVLVVDDSGTSREILTDALESMSFEVGVATTGAEALVALDRAADEGR------PFD 703
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MP M+G EA R I+K + ++ +TA+ + S+ G++ L KP
Sbjct: 704 LVLMDYKMPGMDGIEAARRIKKSSRLHQAPT-VVMVTAYGREEIMSRAERVGVEGFLIKP 762
Query: 1080 LQKDKLLDVVKSI 1092
+ + LL+ + +
Sbjct: 763 VGQSVLLNTIMEV 775
>gi|260177204|gb|ACX33927.1| putative response regulator receiver sensor signal transduction
histidine kinase [uncultured prokaryote AT5]
Length = 378
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 139/277 (50%), Gaps = 50/277 (18%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP-GTDLA-ENLGLIRTCSKD 442
++ E S NK+ LA SH++R L AIIGL E+ +A GT+ A E L +
Sbjct: 140 QRLEAASHNKSQFLADMSHELRTPLNAIIGLTEMMVSNAARFGTEKALEPLRRVNAAGTH 199
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V+++SKIEAGK+EL E NLA++++EV+ + K ++++ D L
Sbjct: 200 LLSLINEVLDLSKIEAGKLELNPEPVNLARVIDEVIGTAGQLAEKNQNRLIVEAQDN--L 257
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
G+ D ++LKQIL NL+SN+ KFT EG +++R V+K +A R+ +
Sbjct: 258 GAFT--ADPLRLKQILLNLLSNACKFTKEGDVALR--VRK-------VADGRDWV----- 301
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
E V DTG G+ ++Q +F+EF Q
Sbjct: 302 ----------------------------ELAVADTGIGLTAEQQAKLFQEFTQADSLTAR 333
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
G GLGL + + + +M G++ +A EPG +G F
Sbjct: 334 RYGGTGLGLALSRKLARMMGGDVTVA-SEPG-KGSVF 368
>gi|333982848|ref|YP_004512058.1| PAS sensor protein [Methylomonas methanica MC09]
gi|333806889|gb|AEF99558.1| PAS sensor protein [Methylomonas methanica MC09]
Length = 2326
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 135/275 (49%), Gaps = 49/275 (17%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA SH++R + AI+G L D + NL +I + LL ++N V+E++KIE
Sbjct: 1864 LANMSHELRTPMNAILGFSNLMRRDPQITENQRVNLAIINRSGEHLLNLINDVLEVAKIE 1923
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQI 517
AG+++L F+LA ++ +V +M +KG+ ++LD S +++GD +++QI
Sbjct: 1924 AGRLKLEIGLFDLAAMVRDVNEMMQIRAHEKGLWLLLDQ---SSEFPRYIKGDEGRIRQI 1980
Query: 518 LCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDA 577
+ NL++N++KFT+EG +++R VK + + +I
Sbjct: 1981 IINLINNALKFTAEGGVTIRLGVKNNAREHLLI--------------------------- 2013
Query: 578 LHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSM 637
EV+DTG GI + + +FE FVQ+ + ++G GLGL I +
Sbjct: 2014 ---------------EVEDTGSGIAPENRQRLFEPFVQLSDD--NARQGTGLGLAITRQF 2056
Query: 638 VHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
V LM G IA+ + +G FR ++ L E
Sbjct: 2057 VQLMGGSIAV--ESILGKGALFRVDLPLAPAVAAE 2089
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G + ++VED + S ++ LG + ++ NG++ ++ D + D I
Sbjct: 2110 GYRIMIVEDQRDNQLLLSRLMTDLGLEVKIAGNGEQCL----QLFQDWKP-------DLI 2158
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD MPVM+G EAT+ +R+ E V I+A+TA A +++DAGMD + KP +
Sbjct: 2159 WMDRRMPVMDGIEATKRLRQLPEGATVK--IVAVTASAFKEQEQEMLDAGMDDFVRKPYR 2216
Query: 1082 KDKLLD 1087
D++ D
Sbjct: 2217 FDEIYD 2222
>gi|421095142|ref|ZP_15555855.1| 7TM diverse intracellular signaling [Leptospira borgpetersenii str.
200801926]
gi|410361852|gb|EKP12892.1| 7TM diverse intracellular signaling [Leptospira borgpetersenii str.
200801926]
Length = 822
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 150/313 (47%), Gaps = 49/313 (15%)
Query: 360 IILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC 419
IIL+ K ++ LI+ A E AE+ S K+ LA SH++R + ++G+V+L
Sbjct: 406 IILLKKEIQQRRETEWELIQ---AKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLL 462
Query: 420 HEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVD 479
+ E + ++ +K LL I+N +++ SKIEAGK+ L +E F++ +L+E+ D
Sbjct: 463 G-TTKLNDEQKEYIQILSISAKSLLQIINDILDFSKIEAGKISLDKEVFSIHSVLDEIHD 521
Query: 480 MYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAA 539
+ Y + +K + + L+ D S + +V GD+++L+QIL NL N +KFT+ G + +
Sbjct: 522 LLYPLAKQKRIGLRLE--DKSEIQE-YVYGDQLRLRQILWNLTGNGIKFTNHGEVVL--- 575
Query: 540 VKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGK 599
NV K +SK + + +F V D+G
Sbjct: 576 ---------------NVSQKNISK----------------------DKISIKFTVSDSGI 598
Query: 600 GIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
GIP +KQ +F+ F Q + G GLGL I + +V L G + + KE G F
Sbjct: 599 GIPLEKQKQVFDAFSQSDTSTARKFGGSGLGLSITKQLVELQGGTLNLESKE--SYGSKF 656
Query: 660 RFNVLLTAVCERE 672
F + E E
Sbjct: 657 TFTITYDIPSESE 669
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K LV ED+ + L KLG V NG+E + K+ D +D I+M
Sbjct: 695 KILVAEDNETNCLLIERALKKLGYDPVVVHNGREVIE---KMQLDF--------FDMILM 743
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D MP ++G EAT+ IR +++ + I IIALTA + + GM+ +LTKPL
Sbjct: 744 DIHMPEVDGIEATKWIRSQKQNTEFPI-IIALTADVIESNKEVYISKGMNDYLTKPL 799
>gi|114570615|ref|YP_757295.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
gi|114341077|gb|ABI66357.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
Length = 572
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 131/286 (45%), Gaps = 53/286 (18%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA H+VR L ++G+ ++ H+ D E L LIR LL +LN +++ SKIE
Sbjct: 182 LANVGHEVRTPLNGMLGMADVMHQVGGLSPDQDERLQLIRDSGATLLELLNEILDQSKIE 241
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQI 517
G++ +F+L +L+E+ + +G+D+ D + L ++GD ++++QI
Sbjct: 242 TGQVMAERIDFDLGKLVEKAASSWRPEAESRGLDLH---LDLAALHHPVLQGDPLRIRQI 298
Query: 518 LCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDA 577
L NLVSN++KFT GH++++
Sbjct: 299 LNNLVSNALKFTKTGHVALK---------------------------------------- 318
Query: 578 LHSVERNP----NLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
VE++P EV DTG GIP +K +IFE F Q + G GLGL I
Sbjct: 319 ---VEQSPGATATTWNTRIEVTDTGSGIPSEKLEAIFEAFHQADASITRRYGGTGLGLSI 375
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEE 679
+ + HLM G + + PG RG CF N+ L A E DT E
Sbjct: 376 SRQLAHLMDGTLDVTST-PG-RGSCFALNLPL-AAGELAPADTAER 418
>gi|400752984|ref|YP_006561352.1| signal transduction histidine kinase [Phaeobacter gallaeciensis
2.10]
gi|398652137|gb|AFO86107.1| signal transduction histidine kinase [Phaeobacter gallaeciensis
2.10]
Length = 764
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 130/272 (47%), Gaps = 45/272 (16%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R + ++G+ EL D N + I+ + LL I+N V++
Sbjct: 216 KSAFLANMSHEIRTPMNGVVGMAELL-SDTNLSDEQQLYANTIKNSGEALLVIINDVLDY 274
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEA K+EL E F+L + + EV+ + KG+ ++L D + GD +
Sbjct: 275 SKIEAQKLELHPEPFDLERSVHEVLMLLQPTARDKGLTLLL---DYDLFLPTSFVGDPGR 331
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
++Q+L NLV N++KFTSEGH++++ I N K S
Sbjct: 332 IRQVLTNLVGNAVKFTSEGHVALQ------------ITGISNADDKICS----------- 368
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
++DTG GIP++K IF EF QV++ EG GLGL I
Sbjct: 369 ----------------IHVTIEDTGIGIPEEKVQDIFGEFNQVEDERNRQFEGTGLGLAI 412
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ ++ LM GEI + +E +G CF F + L
Sbjct: 413 SKRLIELMGGEIWVESQE--GKGSCFGFRMEL 442
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L ED+ V ++ L + NG EA + DL I M
Sbjct: 628 RVLAAEDNRTNQLVFRKMVKDLNIDLQFVSNGIEAVEAYQSFQPDL-----------IFM 676
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MPVM+G EATR IR E ++ P++ALTAHAMAG + I+ AG+D +LTKPL+K
Sbjct: 677 DISMPVMDGKEATRKIRALEHGTGIYTPVVALTAHAMAGDSDGILAAGLDHYLTKPLRK 735
>gi|406998814|gb|EKE16674.1| hypothetical protein ACD_10C00859G0003 [uncultured bacterium]
Length = 996
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 142/290 (48%), Gaps = 46/290 (15%)
Query: 376 ALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL 435
A ++ + A + AE S K+ LA SH++R + +IG+ EL D + E L +
Sbjct: 347 AEVEILQARDVAEAASQAKSDFLANMSHEIRTPMNGVIGMTELAL-DTALTEEQREYLDI 405
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
+++ ++ LL I+N +++ SKIEAGK+++ E F+L +++ + + +K ++++ +
Sbjct: 406 VKSSAESLLAIINDILDFSKIEAGKLQVEEISFDLHRVIADTLKTLALRAHEKNLELISE 465
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
CHV GD +++Q+L NL+ N++KFT +G IS+R + K ++ N
Sbjct: 466 VMPKV---PCHVFGDPSRIRQVLVNLLGNAIKFTEQGEISLRTELIK------VVDGNAY 516
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
+ F V DTG GI DKQ IFE F Q
Sbjct: 517 I----------------------------------HFAVSDTGVGIAPDKQELIFEAFSQ 542
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ G GLGL I + +V LM GEI + + + G RG F F++ L
Sbjct: 543 EDTSTTRRFGGTGLGLSISRHLVALMGGEIWL-ESQLG-RGSTFHFSLKL 590
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 20/176 (11%)
Query: 923 LNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVL 982
L+ L+ F A G +++ + L + + ++ LN L+VED + K+ +L
Sbjct: 720 LSALRRFFAMGGQPLATRHTLLNRHVLRE----LQRSLN---ILLVEDHPVNQKLALGLL 772
Query: 983 GKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042
K G + + NG+EA I S+ +D I+MD +MPVM G EAT IR+
Sbjct: 773 EKWGHQATLANNGQEAL----AIFSES-------AFDLILMDMQMPVMGGLEATLRIRQM 821
Query: 1043 E--EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096
E ++ PIIA+TA AM G + GMD +L+KP++ +LL+ + S M
Sbjct: 822 ELADESRRRTPIIAMTASAMQGDREACLGVGMDEYLSKPIKARELLEKLLSFGAQM 877
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 14/132 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHV-CKILSDLRKEGKALPY 1018
L G+ LVV+D+A +V S +L K ++ +G A D + C S +
Sbjct: 606 LRGRHILVVDDNATNRRVLSGLLAAWDVKTQLAESGAMALDIMRCAETS----------F 655
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D I++D +MP M+G+E R +R E Q P++ L++ AM G + AG+D + +K
Sbjct: 656 DCIILDAQMPAMDGYELARQLRAEHPQLP---PMLMLSSSAMRGDEQRCQAAGIDAYFSK 712
Query: 1079 PLQKDKLLDVVK 1090
P+ + LL ++
Sbjct: 713 PISSEDLLSALR 724
>gi|374813793|ref|ZP_09717530.1| sensor protein GacS [Treponema primitia ZAS-1]
Length = 1070
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 143/277 (51%), Gaps = 43/277 (15%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC--HEDANPGTDLA 430
L L++ A Q++ ++ +K+ LA+ SH++R + AIIG+ EL E++ TD
Sbjct: 316 LSFILLRITRAKIQSDEENKSKSSFLARMSHEIRTPMNAIIGISELALREENSQKTTDY- 374
Query: 431 ENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV 490
LG IR ++LL I+N +++ SKIE+GK++++ E+ A L+ + + + +K V
Sbjct: 375 --LGGIRQAGENLLSIINDILDFSKIESGKIDIISTEYMFASLINDCISIIRTRLTEKPV 432
Query: 491 DVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDII 550
V+L DGS+ S + GD +++QIL NL+SN++K+T +G+I+ +
Sbjct: 433 -VLLTKIDGSLPASFN--GDESRIRQILLNLLSNAVKYTHKGYIT-------------LT 476
Query: 551 ASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIF 610
+N N S + + + FE+ DTG GI ++ +F
Sbjct: 477 ITNSNTTSNA----------------------ADGDTMLLSFEIADTGIGIKEEDMGKLF 514
Query: 611 EEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
+F + + A EG GLGL I +++ L+ G+I +
Sbjct: 515 GDFNRFDQRANQGIEGTGLGLAIARNLCRLLGGDITV 551
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 16/131 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D + L V +L K + C +G+EA V K YD I M
Sbjct: 712 RILLVDDVSTNLIVAEGLLAPYQVKVDCCSSGEEALKLVGK-----------HSYDIIFM 760
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDV-----HIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D MP M+G E T +IR E + + HIPIIALTA+A++G+ + G + +L+K
Sbjct: 761 DHMMPGMDGIETTAIIRAWEAKQQILEHTSHIPIIALTANAVSGMKEMFLSKGFNDYLSK 820
Query: 1079 PLQKDKLLDVV 1089
P++ KL +++
Sbjct: 821 PIELTKLDEIM 831
>gi|385798974|ref|YP_005835378.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
DSM 2228]
gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
DSM 2228]
Length = 921
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 143/290 (49%), Gaps = 52/290 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRT 438
A ++A S K+ L+ SH++R + +IIG+ EL E T+L+E + + +
Sbjct: 392 ARDKAMEASRAKSEFLSTMSHEIRTPMNSIIGMAELLQE-----TELSEQQQKYINIFQN 446
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
+ LL ++N ++++SKIEAG++EL E+FNL + +E + +M KKG+++ L
Sbjct: 447 AGESLLTLINDILDLSKIEAGRIELEAEKFNLVETVENIAEMISLRAFKKGLELPLRIA- 505
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
+ + C V GD +++QIL NL+ N++KFT +G +
Sbjct: 506 -AEVPEC-VIGDSERIRQILINLLGNAVKFTEKGQV------------------------ 539
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
F DL + S ++ + Q F + DTG GI K KQ IF+ F Q
Sbjct: 540 -------------FLDL-RIDSEFKSKDQKQVIFAIKDTGIGIEKAKQKQIFDSFTQADS 585
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
++ G GLGL I + +V LM G+I + K + G F F++ L V
Sbjct: 586 SSTRKYGGTGLGLTISKQLVELMGGKIWL--KSTPQLGSTFYFSLPLKIV 633
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 93/174 (53%), Gaps = 19/174 (10%)
Query: 922 PLNK--LKSFGAEAGASISSH-CSSLQQVAAQSDGKCSEKPLN--GKKFLVVEDDAIVLK 976
P+ K L S +A A I + + +Q A + K S+K L K+ L+VED+
Sbjct: 757 PVRKKDLFSLLEKAAAKIENKKANDFKQKAEKE--KVSQKDLTTANKELLIVEDNPDNRF 814
Query: 977 VTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEAT 1036
+ A L K + ++ +NG EA V K S L YD ++MD +MP MNG++A
Sbjct: 815 LIKAFLKKKNYQLDIAKNGIEA---VEKFKSKL--------YDLVLMDIQMPEMNGYQAV 863
Query: 1037 RLIRK-EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
IRK E+E + P++ALTA+A+ K + G D HLTKPL+KDKL ++
Sbjct: 864 NEIRKWEKENKKIKTPVVALTAYALDSDKEKALKEGFDDHLTKPLKKDKLYQLI 917
Score = 44.3 bits (103), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K LVV+D+ + + +L + G + +N +EA + + + E +A PY I+M
Sbjct: 651 KILVVDDNPTNIFILKEILAERGIEIGTAQNQQEALTEIAQSI-----EAQA-PYQIILM 704
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDV-HIPIIAL-TAHAMAGVASKIVDAGMDFHLTKPLQ 1081
D MP NG + ++ IR E++D+ ++ II L +A+A + ++ + ++ + KP++
Sbjct: 705 DNFMPQKNGLDTSKKIR---EKFDLPNLQIIILSSAYAEKNLQNR--EGLINDFMMKPVR 759
Query: 1082 KDKLLDVVK 1090
K L +++
Sbjct: 760 KKDLFSLLE 768
>gi|428305491|ref|YP_007142316.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
gi|428247026|gb|AFZ12806.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
Length = 1154
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 130/256 (50%), Gaps = 35/256 (13%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELC-HEDANP-GTDLAENLGLIRTCSKDLLGILNSVM 451
K+ LA SH++R + AIIG+ L + + P D E +T S LL I+N ++
Sbjct: 434 KSQFLANMSHEIRTPMNAIIGMTGLLLNTELTPLQRDFVET---TQTSSDALLTIINDIL 490
Query: 452 EMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDR 511
++SKIE+GK+EL FNL +EE +D+ K +++V C S + GD
Sbjct: 491 DLSKIESGKLELENYSFNLRTCIEEALDLLTPKAAGKNIELV---CLISPQVPIIIWGDS 547
Query: 512 VKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEG 571
+L+QIL NL+SN++KFT +G I + ++ F +NK+
Sbjct: 548 TRLRQILVNLLSNAIKFTEKGEILLSVNAQE----------------------FEKNKKL 585
Query: 572 FDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631
LD +++ R + +F V D+G GIP D+ + +F+ F QV + H G GLGL
Sbjct: 586 SKKLD--NNLNRQ---ISIQFAVKDSGIGIPADRMDRLFKSFSQVDSSTTRHYGGTGLGL 640
Query: 632 GIVQSMVHLMKGEIAI 647
I + + +M G++ +
Sbjct: 641 AISKQLSEMMGGQMWV 656
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 76/135 (56%), Gaps = 15/135 (11%)
Query: 955 CSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK 1014
E PL + L+ ED+ + KV +L ++G + ++ NG EA L LR++
Sbjct: 883 AEELPL---RILLTEDNVVNQKVALHILKRMGYEADIANNGLEA-------LVALRRQS- 931
Query: 1015 ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDF 1074
YD ++MD +MP M+G ATR I +E + IIA+TA+AM G ++AGMD
Sbjct: 932 ---YDVVLMDMQMPEMDGLTATRQICQEWSSEE-RPRIIAMTANAMQGDRELCLNAGMDD 987
Query: 1075 HLTKPLQKDKLLDVV 1089
+++KP++ D L++ +
Sbjct: 988 YVSKPIRVDVLIEAL 1002
>gi|333999079|ref|YP_004531691.1| sensory box histidine kinase/response regulator [Treponema primitia
ZAS-2]
gi|333739858|gb|AEF85348.1| sensory box histidine kinase/response regulator [Treponema primitia
ZAS-2]
Length = 754
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 46/269 (17%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLIRTC 439
+ A +AE S K+ LAK SH++R + AIIG+ EL ED +P ++EN G ++
Sbjct: 121 VQARYEAEAASQAKSDFLAKMSHEIRTPMNAIIGMSELILREDTSPS--VSENAGNVKQA 178
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
+LL I+N +++ SKIE+GKME++ EE+ L+ LL +V ++ K + ++ +
Sbjct: 179 GMNLLSIINDILDFSKIESGKMEILSEEYWLSSLLHDVTNIIRMRLTDKPIAFTVN-INS 237
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
++ G ++GD +++Q+L NL+SN++K+T EG ++
Sbjct: 238 ALPG--RLKGDETRVRQVLLNLLSNAVKYTKEGSVT------------------------ 271
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
S E +L FE DTG GI K+ +F EF Q
Sbjct: 272 ---------------FSVFGSGEEEGRIL-LNFEAADTGIGIKKEDMGRLFREFAQFDSH 315
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIA 648
EG GLGL I + + M G++ ++
Sbjct: 316 VNKSVEGTGLGLAITKRLCQAMGGDVTVS 344
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 63/143 (44%), Gaps = 32/143 (22%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D L V +L +GKEA + + K YD + M
Sbjct: 393 RLLIVDDIVTNLNVAKGLLSLYQMDITTATSGKEAIELI-----------KKNRYDIVFM 441
Query: 1024 DCEMPVMNGWEATRLIRK-EEEQ--------------------YDVHIPIIALTAHAMAG 1062
D MP M+G EAT IR E+EQ Y HIPIIALTA+A+ G
Sbjct: 442 DHMMPEMDGIEATAAIRAWEDEQQMLVEFEPKDQTPKEQSSKEYAKHIPIIALTANAVTG 501
Query: 1063 VASKIVDAGMDFHLTKPLQKDKL 1085
+ + + +L+KP++ KL
Sbjct: 502 MKEMFLSRDFNDYLSKPIEISKL 524
>gi|428300452|ref|YP_007138758.1| integral membrane sensor signal transduction histidine kinase
[Calothrix sp. PCC 6303]
gi|428236996|gb|AFZ02786.1| integral membrane sensor signal transduction histidine kinase
[Calothrix sp. PCC 6303]
Length = 573
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 151/315 (47%), Gaps = 52/315 (16%)
Query: 360 IILIAKAAKREMFLCAALIKQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVEL 418
I L+AK+ R + + K++ A E+AE + K+ LA SH++R L A+IGL +L
Sbjct: 302 IGLLAKSLNRLIERVSQRTKELQQAKEEAEAANKTKSQLLANVSHELRTPLNAVIGLSQL 361
Query: 419 CHEDANPGTDLA------ENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQ 472
+DA TDLA +L I + + LL ++N ++++SKIEAGKM L E F +A
Sbjct: 362 LKDDA---TDLALSEDFLTDLETINSAGRHLLELINGILDLSKIEAGKMTLYPENFEIAT 418
Query: 473 LLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG 532
L+ VV K G + +D CD LG+ + D+ +++QIL NL+SNS KFT+ G
Sbjct: 419 LINNVVSTVKPSIEKNGNSLDID-CDPQ-LGTMY--ADQTRVRQILLNLLSNSAKFTTNG 474
Query: 533 HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEF 592
++++ +K+ +D + K + F
Sbjct: 475 KVTLKVWTEKEDKGKDF------PVEKII------------------------------F 498
Query: 593 EVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEP 652
V DTG G+ +Q +F F Q + G GLGL I + +M G+I + EP
Sbjct: 499 TVIDTGIGMTYHQQQQLFIPFTQGDASTTKKYGGTGLGLSISRHFCQMMGGDIKV-QSEP 557
Query: 653 GERGVCFRFNVLLTA 667
G G F ++ L A
Sbjct: 558 G-VGSVFTVDMPLMA 571
>gi|357495343|ref|XP_003617960.1| Histidine kinase cytokinin receptor [Medicago truncatula]
gi|355519295|gb|AET00919.1| Histidine kinase cytokinin receptor [Medicago truncatula]
Length = 1269
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 103/348 (29%), Positives = 164/348 (47%), Gaps = 53/348 (15%)
Query: 341 SLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATE-QAERKSMNKTFALA 399
S+ + V+ F+ G I F I + AK E C QM + +AE + K+ LA
Sbjct: 573 SVGVFVITFLLGYI----FYAAINRIAKVEDDYC-----QMRELKVRAEAADVAKSQFLA 623
Query: 400 KASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRTCSKDLLGILNSVMEMSK 455
SH++R + ++G++++ + TDL +N T KDL+ +++ V+ +K
Sbjct: 624 TVSHEIRTPMNGVLGMLQMLMD-----TDLDDNQMDFAQTAHTSGKDLISVISEVLYQAK 678
Query: 456 IEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVR----GDR 511
IEAGK+EL F+ +L+EV+ ++ +KG+++ SV S V GD
Sbjct: 679 IEAGKLELEAVAFHPHAILDEVLSLFSEKSDEKGIEL-------SVYASNQVPEVVIGDP 731
Query: 512 VKLKQILCNLVSNSMKFT-SEGHISVRAAVKKK----------------SFKQDIIASNR 554
+ +QI+ NLV NS+KF ++GH+ V + + + QD+
Sbjct: 732 KRFRQIITNLVGNSLKFIHNKGHVFVSIHLANEVKNPLHIMDAVLRECLNLNQDMSERTC 791
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
N +S +++ E F L+ H E +Q V+DTG GIP D Q+ IF F+
Sbjct: 792 NTLSGFPVGNRWKSWEKFQKLNLAHESET----IQLLVTVEDTGIGIPTDAQSRIFTPFM 847
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
Q + G G+GL I + +V LM GEI EP E G F F
Sbjct: 848 QADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVS-EP-EIGSTFSFT 893
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 90/222 (40%), Gaps = 46/222 (20%)
Query: 901 NFPKLKMEASSQELQHCTDPNPLNKLKSFGA---------EAGASISSHCSSLQQVAAQS 951
NFPK+ + A+ PN +LKS G I + SL Q
Sbjct: 1006 NFPKIFLLATH------LSPNERKELKSVGIIDDVLMKPLWQSVLIRYYRESLGTGRKQI 1059
Query: 952 DGKCS---EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSD 1008
D K E L K+ LVV+D+A+ KV VL K GA GK A K+L
Sbjct: 1060 DRKKVSQLENLLIHKRILVVDDNAVNRKVAEGVLRKYGAVVTCVDGGKAAL----KVLKP 1115
Query: 1009 LRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHI 1050
+D MD +MP M+G+E TR IR E + + HI
Sbjct: 1116 PHN------FDACFMDLQMPEMDGFEVTRRIRYMENEVNEKIACGEELAEMFGNISYWHI 1169
Query: 1051 PIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
PI+A+TA + GMD ++KP ++++L V +
Sbjct: 1170 PILAMTADVTQASNEECKKCGMDDFVSKPFEEEQLYTAVACV 1211
>gi|407700554|ref|YP_006825341.1| diguanylate cyclase [Alteromonas macleodii str. 'Black Sea 11']
gi|407249701|gb|AFT78886.1| GGDEF domain protein [Alteromonas macleodii str. 'Black Sea 11']
Length = 1395
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 144/296 (48%), Gaps = 53/296 (17%)
Query: 375 AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLG 434
A+ +KQ A EQAE + K+ LA SH++R + +IG++ L + +N T+ + +
Sbjct: 834 ASDLKQ--ALEQAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLLKK-SNLTTEQYQRVN 890
Query: 435 LIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL 494
+ + + LL ++N +++ SKIEA K+EL +F++ L+E + H+ +KG++VV+
Sbjct: 891 IASSSANSLLVLINDILDFSKIEADKLELESVDFDVRGLIESIAQSVAHLAQEKGLEVVV 950
Query: 495 DPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
D S + + D +++QIL NL+SN++KFT +G +SV A +
Sbjct: 951 DV---SKISESKINSDPSRIQQILTNLLSNAVKFTEKGELSVTAEL-------------- 993
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
L S +N LL V DTG GIP K +F+ F
Sbjct: 994 -----------------------LPSDGKNSALLH--ISVADTGIGIPASKLPHLFDAFT 1028
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
QV + G GLGL I + + L+ G+I++ E G RF+V CE
Sbjct: 1029 QVDASTTRRYGGTGLGLSITKKLCQLLGGDISVTT----ELGNGSRFDV----TCE 1076
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 13/153 (8%)
Query: 943 SLQQVAAQSDGKCSEKP---LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAF 999
++Q + A+ P L K+ L+VED+ I V + V+ G + +V NG EA
Sbjct: 1244 AMQHIEAKPSQAEETNPASSLGKKRVLLVEDNVINQMVATNVIESGGYEVDVANNGVEAL 1303
Query: 1000 DHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR--KEEEQYDVHIPIIALTA 1057
D L++ Y+ I+MDC+MP M+G+EAT+LIR E Y IPIIA+TA
Sbjct: 1304 DL-------LKRSKHEQAYNAIVMDCQMPEMDGFEATKLIRYGAAGENYKT-IPIIAMTA 1355
Query: 1058 HAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
+AM G ++AGMD LTKP++ DK+ ++
Sbjct: 1356 NAMQGDKDMCMEAGMDDFLTKPIEHDKVTSTLQ 1388
>gi|355682890|ref|ZP_09062713.1| hypothetical protein HMPREF9469_05750 [Clostridium citroniae
WAL-17108]
gi|354810775|gb|EHE95413.1| hypothetical protein HMPREF9469_05750 [Clostridium citroniae
WAL-17108]
Length = 930
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 148/297 (49%), Gaps = 46/297 (15%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
+A + A S KT L+ SHD+R + AIIG+ + + N + + L I T S+
Sbjct: 408 DACKTARIASDAKTNFLSSMSHDIRTPMNAIIGMSVIAQSNLNSPDKIQDCLAKINTSSR 467
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N V++MSKIE+GK++L+ EE +L +L+E+V+D++ + +K + + + +
Sbjct: 468 HLLNLINEVLDMSKIESGKIDLIYEEVSLPKLIEDVMDVFRPLVAEKYQTLQV---NANR 524
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+ HV D+ +L+Q+L NL+SN++K+T EG N+ +
Sbjct: 525 VRHEHVVTDKGRLQQVLVNLLSNAVKYTPEGG---------------------NIGLRIQ 563
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
F +G Q+ F V D+G G+ +D + +FE F + + +
Sbjct: 564 ETPSFAKGKG-----------------QYSFVVTDSGIGMHEDFISHVFEPFSRADDARI 606
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDE 678
+ +G GLG+ I Q++V +M G I + PG +G F V E P+TD+
Sbjct: 607 NNIQGTGLGMAITQNIVRMMNGTIEVK-STPG-KGSQFVVAVTFDLCSE---PETDD 658
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 10/131 (7%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
LNGKK L+ ED+ + ++ +L G + NG A D K Y
Sbjct: 804 LNGKKLLLAEDNELNREIAMELLKAHGLLIDTADNGLMAVDRF--------KTSAPGEYA 855
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
I+MD +MPVM+G+ AT+ IR E + D H IPI+ALTA+A A K AGM+ H+ K
Sbjct: 856 CILMDIQMPVMDGYNATKAIRALEHE-DAHTIPILALTANAFASDIGKAHSAGMNDHIAK 914
Query: 1079 PLQKDKLLDVV 1089
P+ + L++ +
Sbjct: 915 PIDVELLMETL 925
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 951 SDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLR 1010
S+ + + L G LV +DD + + S +L +LG + +G+EA D V K
Sbjct: 652 SEPETDDGELAGLPVLVADDDQAICESVSEILNELGMQCSWVLSGREAVDRVVK------ 705
Query: 1011 KEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDA 1070
++ + +++D MP ++G E +LIR + +PII ++A+ + + K A
Sbjct: 706 AHEQSDDFFAVILDWIMPDIDGLETLKLIRT---RVGPDMPIIIISAYDFSEIEDKFRLA 762
Query: 1071 GMDFHLTKPLQKDKLL 1086
G D +TKPL K K++
Sbjct: 763 GADAFITKPLFKSKIV 778
>gi|386346332|ref|YP_006044581.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta thermophila DSM
6578]
gi|339411299|gb|AEJ60864.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta thermophila DSM
6578]
Length = 1278
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 140/301 (46%), Gaps = 46/301 (15%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
K A E+AER K+ LA SH++R L AIIG +L G + A L IR+
Sbjct: 783 KLKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASSFPSGKE-ASYLDAIRS 841
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
K+LL ++N ++++SKIEAGKM L +L +EE+ +++ KG+ +LD
Sbjct: 842 SGKNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVENKGLSFILDYAP 901
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
V D ++L+Q+L NL+ N++KFT +GH+ V+
Sbjct: 902 AL---PPTVEIDELRLRQVLFNLIGNAIKFTEQGHVKVQVR------------------- 939
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
LH+ E +L V+DTG GI +++ +IF+ F Q
Sbjct: 940 -----------------GTLHTEESKVDLT---ISVEDTGIGIRPEEREAIFQSFHQSSG 979
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL-LTAVCERERPDTD 677
G GLGL I + +V +M G I++ + E G +G F + LT ER T+
Sbjct: 980 QDSRKYGGTGLGLTISKRLVEMMGGTISV-ESEYG-KGTTFTVRIPDLTCSAERTASATE 1037
Query: 678 E 678
E
Sbjct: 1038 E 1038
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 15/152 (9%)
Query: 941 CSSLQQVAAQSDGKCSEKPL-NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAF 999
CS+ ++ A+ ++ + P+ GK LVV+D + + L GA NG+EA
Sbjct: 1027 CSA-ERTASATEETGGDVPMYEGKVILVVDDKELNRTLLKEYLAPTGATVIEASNGQEAL 1085
Query: 1000 DHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHA 1059
+ P D I+MD MPVM+G + ++ HIP+IALTA
Sbjct: 1086 SR-----------AETHPPDLILMDIRMPVMDGLTFIKEYYRDPSHR--HIPVIALTASV 1132
Query: 1060 MAGVASKIVDAGMDFHLTKPLQKDKLLDVVKS 1091
+ + + G LTKP+Q+D L ++S
Sbjct: 1133 LKERHEEFLKNGFVEVLTKPIQRDTLFSTLRS 1164
>gi|436839859|ref|YP_007324237.1| Hpt sensor hybrid histidine kinase [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432168765|emb|CCO22131.1| Hpt sensor hybrid histidine kinase [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 925
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 138/291 (47%), Gaps = 51/291 (17%)
Query: 378 IKQMN-----ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN 432
+KQ+N A + AE S +K+ +A SH++R + AIIG+ +L + G E
Sbjct: 256 LKQINKELEYAKDAAETASKSKSQFMANVSHEIRTPMNAIIGMADLTLS-TDLGAKQREF 314
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
L +I + + LL ++N +++ SK+EAGK+ L E +NL QL+ E+ D++ + ++
Sbjct: 315 LKIILSSGRVLLRLINDILDFSKVEAGKLTLEEVNYNLHQLIHEISDLFVEQMVASQTEL 374
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
V+D V GD ++LKQ+L NL +N+ KFT+EG +++ + D+I
Sbjct: 375 VIDIRPDV---PQRVIGDPLRLKQVLVNLTANAFKFTNEGEVTITVSA-------DMITH 424
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
N+ I F + DTG GI ++ Q +FE
Sbjct: 425 NKTEIV---------------------------------FAIKDTGIGISEEIQPHLFEA 451
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
F Q + G GLGL I + +V LM G I + K + G F F +
Sbjct: 452 FKQADGSTTRKYGGTGLGLTISKRIVDLMGGSIWVRSKP--DYGSTFFFTI 500
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 13/138 (9%)
Query: 954 KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEG 1013
K E+ NG L+VED+ I +V +L G + NGKEA + +
Sbjct: 656 KKIEEEFNGFNILLVEDNPINQQVAVQILTATGLTIDTALNGKEAVEKI----------- 704
Query: 1014 KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
+ YD ++MD +MP M+G+EAT +IR + + +P+IA+TAHAM G K + AGMD
Sbjct: 705 QNSSYDLVLMDIQMPEMDGYEATGIIRNQLGLKE--LPVIAMTAHAMRGDKEKCLLAGMD 762
Query: 1074 FHLTKPLQKDKLLDVVKS 1091
++ KP+ KD+++ ++S
Sbjct: 763 DYIPKPIDKDQMISTIRS 780
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 10/130 (7%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
LN LV++D+ V V S L + G + +E + + K DL +
Sbjct: 519 LNEAPVLVIDDNLAVRSVLSRYLTQFGFVPTTVSSAEEGLELIEKRKDDL--------FK 570
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
+I++D ++P MNG EA+++IRK + +PI+ +T+ + SK ++G+ ++KP
Sbjct: 571 FILIDLKLPDMNGDEASKIIRKTYSPEE--LPILMITSTEIDEALSKANESGITKLISKP 628
Query: 1080 LQKDKLLDVV 1089
+++ L + +
Sbjct: 629 IKQTSLYETI 638
>gi|411118666|ref|ZP_11391046.1| ammonium transporter [Oscillatoriales cyanobacterium JSC-12]
gi|410710529|gb|EKQ68036.1| ammonium transporter [Oscillatoriales cyanobacterium JSC-12]
Length = 1086
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 128/268 (47%), Gaps = 51/268 (19%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTD--LAENLGLIRTC 439
NA E+AE+ + K+ LA SH++R L AIIG E+ EDA +L I
Sbjct: 578 NAKERAEQANQTKSQFLANMSHELRTPLNAIIGYSEMLQEDATGAEQERFIPDLQKIHGA 637
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
K LLG++N V+++SKIEAGKMEL E F++A ++ +VV+ + ++K + ++ C
Sbjct: 638 GKHLLGLINDVLDLSKIEAGKMELYLETFDIANMVRDVVNTIQPL-VQKQQNTLVVHCP- 695
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
S +G H D KL+Q L NL+SN+ KFT G I++ A K++S
Sbjct: 696 SDIGIMH--SDLTKLRQNLFNLLSNASKFTENGTITLTVA-KQES--------------- 737
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
+ F V DTG G+ D+ +F+ FVQ +
Sbjct: 738 -----------------------------EVRFTVSDTGIGMTADQIARLFQPFVQADAS 768
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
G GLGL I Q +M G+I +
Sbjct: 769 TTRKYGGTGLGLTITQRFCQMMGGDIWV 796
Score = 45.1 bits (105), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
P K LV++DD + + LGK G +G+E ++ +LR
Sbjct: 838 PSRSKTLLVIDDDPTMHDLLGRYLGKEGFDIIHATSGEEGL----RLARELRPS------ 887
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
I +D MP M+GW ++ + E +IP+I LT M + G +LTK
Sbjct: 888 -MITLDVMMPSMDGWAVLSRLKSDPEL--ANIPVILLT---MVDDKTMGYTLGATDYLTK 941
Query: 1079 PLQKDKLLDVV 1089
P+ +D LL V+
Sbjct: 942 PVNRDCLLAVL 952
>gi|421131632|ref|ZP_15591812.1| 7TM diverse intracellular signaling [Leptospira kirschneri str.
2008720114]
gi|410357006|gb|EKP04291.1| 7TM diverse intracellular signaling [Leptospira kirschneri str.
2008720114]
Length = 804
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 44/293 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 406 IQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 464
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ + + +K +D L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLFPLAKQKEIDFRL---EGK 521
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V GD ++L+QIL NL N +KFT+ G + ++ A K S
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKNIS---------------- 565
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
K+G + EF V D+G GIP +KQ +FE F Q +
Sbjct: 566 --------KDG----------------VSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 601
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL I + ++ L G + + +E F + + ++ E E+
Sbjct: 602 ARKFGGSGLGLSITKQLIELQGGVLKLESQEGEGSKFTFTIDYDIPSILEIEK 654
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 91/216 (42%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 598 DTSTARKFGGSGLGLSITKQLIELQGGV------LKLESQEGEGSKFTFTIDYDIPSILE 651
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V ++S + LV ED+ + L K
Sbjct: 652 IEKILEAEKTKDLEK---SFQDVVSKS-----------TRILVAEDNETNCLLIERALKK 697
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + + + +D I+MD MP ++G EAT+ IR + +
Sbjct: 698 LGYDPTVVHNGREVIERM-----------QLETFDIILMDIHMPEVDGIEATKWIRSKNQ 746
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I IIALTA A+ K + GM+ LTKPL
Sbjct: 747 NSKFPI-IIALTADAIESSREKYISKGMNDCLTKPL 781
>gi|428214370|ref|YP_007087514.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002751|gb|AFY83594.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1733
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 142/283 (50%), Gaps = 34/283 (12%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L AI+G +L + +++ E L +I + LL ++N ++EM
Sbjct: 1257 KSEFLANMSHELRTPLNAILGFTQLMNRNSSLSPQHQEYLKIINQAGEHLLSLINDILEM 1316
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEAG+ L F+L LL + M KG+++ + D ++ G + D K
Sbjct: 1317 SKIEAGRTVLNPTSFHLISLLRNLEAMLKVQAQSKGLELNFE-LDSNLPG--MIMSDESK 1373
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
L+Q+L N++ N++KFT+ G +++RA ++ D+ N N ++K S +F
Sbjct: 1374 LRQVLINILGNAIKFTNSGRVTLRAQLEP-----DV---NNNSLNK--SPIF-------- 1415
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
P++L E+ DTG GI ++ N +FE F Q ET Q+G GLGL I
Sbjct: 1416 --------SETPSILG--IEIADTGSGIAPEEMNHLFEPFSQT-ETGRKSQQGTGLGLPI 1464
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT 676
+ + LM G+I ++ G F F + + + E P T
Sbjct: 1465 SRKFIQLMGGDIHVSSTVGV--GTVFSFEIQIVPINETLEPPT 1505
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D + +L ++G + NG+EA L I M
Sbjct: 1522 RILVVDDAVNNRRFLVTLLSEIGFEVLEAENGQEAIALWSSWDPHL-----------ICM 1570
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MPV++G++AT+ I+ + D IIALTA A I+ G D L KP +++
Sbjct: 1571 DMQMPVLDGYQATQQIKASRKGQDT--VIIALTASAFEEERKGILSCGCDDFLHKPFREE 1628
Query: 1084 KLLDVVKS 1091
L + + +
Sbjct: 1629 VLFEKIST 1636
>gi|317486965|ref|ZP_07945775.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
gi|316921840|gb|EFV43116.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
Length = 1084
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 136/297 (45%), Gaps = 58/297 (19%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA----ENLGLIRT 438
A E+AE S K+ LA SH++R + IIG+ L + T+L + L I T
Sbjct: 556 AKEEAETASRAKSDFLANMSHEIRTPMNGIIGMTHLTLQ-----TELTSRQRDYLTQIST 610
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDP 496
+ LL I+N +++ SKIEAGK+E+ +F L Q+LEEV + +KG++++ + P
Sbjct: 611 SANTLLRIVNDILDFSKIEAGKLEMEHADFQLEQVLEEVASIADLSAAEKGLELLSRISP 670
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
VL GD ++L QIL NLV N++KFT GH+ V + R+
Sbjct: 671 DVPPVL-----EGDALRLSQILLNLVGNAIKFTQSGHVLVS------------VTQERHE 713
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
SK + F V DTG G+ ++ ++FE F Q
Sbjct: 714 GSKT----------------------------RLRFSVSDTGIGMTSEQIGNLFESFTQA 745
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
+ G GLGL I + +V+LM GEI + PG G F F V ER
Sbjct: 746 DNSTTRRYGGTGLGLAICKRLVNLMGGEIHVRST-PGH-GSDFIFTAEFGTVAVPER 800
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 13/130 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G + L+ ED+AI +V + +L G E +G EA + + EG YD
Sbjct: 955 LVGARVLLAEDNAINRQVANEILQSSGVSVEPAGDGLEAVEKLW--------EGG---YD 1003
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MP M+G +ATR++R E ++D ++PIIA+TAHAM G K + GM ++ KP
Sbjct: 1004 AVLMDIQMPGMDGLKATRILR-EYARFD-NLPIIAMTAHAMNGDREKSLSVGMQDYIAKP 1061
Query: 1080 LQKDKLLDVV 1089
++ LL +
Sbjct: 1062 IEPSVLLSTL 1071
>gi|427728258|ref|YP_007074495.1| signal transduction histidine kinase [Nostoc sp. PCC 7524]
gi|427364177|gb|AFY46898.1| signal transduction histidine kinase [Nostoc sp. PCC 7524]
Length = 574
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 149/311 (47%), Gaps = 46/311 (14%)
Query: 360 IILIAKAAKREMFLCAALIKQM-NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVEL 418
I L+AK+ R + + +++ A E AE S K+ LA SH++R L A+IGL +L
Sbjct: 303 IGLLAKSLNRLIERVSERTRELEQAKELAEAASKAKSRFLANVSHELRTPLNAVIGLSQL 362
Query: 419 CHEDA---NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLE 475
+DA N D +L I + + LL ++N ++++SKIEA KM L E F +A L+
Sbjct: 363 LQDDATDLNLSGDFITDLETINSAGRHLLELINDILDLSKIEAEKMTLYPETFEIATLIN 422
Query: 476 EVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHIS 535
VV + I+K +V+ D LG+ + D+ +++Q+L NL+SN+ KFT+ G I+
Sbjct: 423 NVV-LTVKPAIEKNGNVLEVDYD-EYLGTMY--ADQTRMRQVLLNLLSNAAKFTTNGKIT 478
Query: 536 VRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVD 595
+ K++F L+A L F V
Sbjct: 479 LTVKHDKQNF----------------------------SLEA--------PLGMMTFTVS 502
Query: 596 DTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGER 655
DTG G+ +Q +F+ F+Q + G GLGL I + +M GEI + +PG
Sbjct: 503 DTGIGMSPAQQQQLFQPFIQGDTSTTKKYGGTGLGLAISRHFCQMMGGEI-VVQSQPG-V 560
Query: 656 GVCFRFNVLLT 666
G F N+ LT
Sbjct: 561 GSTFTVNLPLT 571
>gi|421504067|ref|ZP_15951011.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina DLHK]
gi|400345168|gb|EJO93534.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina DLHK]
Length = 907
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 155/328 (47%), Gaps = 53/328 (16%)
Query: 348 MFIAGVISLGLFIILIAKA---AKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHD 404
+F A + +G+ I LI + A R L + A EQA +S K+ LAK SH+
Sbjct: 352 VFGATAVKIGVTIELITLSIGLADRINLLKEEGFQSRRAAEQAAFESQAKSRFLAKMSHE 411
Query: 405 VRASLAAIIGLVELCHEDANPGTDLAENLGL--IRTCSKDLLGILNSVMEMSKIEAGKME 462
+R L ++G+++L E D ++ + I + L+ ++N +++ ++IE+GK+
Sbjct: 412 IRTPLNGVLGMLQLLRETP---LDRSQRFYVDTISSSGSSLMAVINDILDYARIESGKLS 468
Query: 463 LVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLV 522
L + EF+L ++ E + ++ + K + + + +G V ++GD +LKQ+L NL+
Sbjct: 469 LEQIEFDLEDMISETLSLFTGQALDKRLRLYVS-LEGGV--PRRIQGDPTRLKQVLMNLL 525
Query: 523 SNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVE 582
SN++KFT+EGH++V + + S Q
Sbjct: 526 SNALKFTAEGHVAVSVSRRSDSHGQ----------------------------------- 550
Query: 583 RNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMK 642
P+L+ F V D+G GI + +FE F Q + G GLGL I + +V +M
Sbjct: 551 --PHLV---FAVSDSGIGISEQALAKLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMG 605
Query: 643 GEIAIADKEPGERGVCFRFNVLLTAVCE 670
G I + PG+ G F F++ L E
Sbjct: 606 GRIEV-QSTPGQ-GTRFAFDIPLLEAPE 631
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 82/186 (44%), Gaps = 21/186 (11%)
Query: 908 EASSQELQHCTDPNPLNKLKS--FGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKF 965
E+ LQH P +N L+ G H + + + D C
Sbjct: 732 ESKGLRLQHLAQPLAINALRQALTGLYEEPRAQVHHLVREVRSDKGDAPC---------I 782
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LV ED+ + V L K G + +G+ A D + + ++ I+MDC
Sbjct: 783 LVAEDNPVNQLVVQGFLKKRGYSVRLVTDGQAAVDEYSRDPAAVQ---------LILMDC 833
Query: 1026 EMPVMNGWEATRLIRK-EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
EMPVM+G+EATR IR+ E Q +PIIALTAH + +DAGMD L KPL
Sbjct: 834 EMPVMDGFEATRQIRRLEHSQQLGAVPIIALTAHILDEHRQHGMDAGMDDFLGKPLDSKL 893
Query: 1085 LLDVVK 1090
L ++
Sbjct: 894 LYSTLE 899
>gi|254255329|ref|ZP_04948645.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
gi|124901066|gb|EAY71816.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
Length = 1020
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 138/287 (48%), Gaps = 41/287 (14%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN-LGLIRTCSKDLLGILNSVME 452
K+ LA SH++R L A+IG +EL P D L T S LL ILN V++
Sbjct: 533 KSVFLATMSHEIRTPLNAVIGNLELMKR--GPLADAQRRRLHAADTSSTALLHILNDVLD 590
Query: 453 MSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRV 512
+SK+EAG++ + F+ A LL++V + + + +KG+ V+ CD ++ S + GD +
Sbjct: 591 LSKVEAGQLRIDAVPFDCAALLDDVTESFRPLAERKGLSVI---CDVALEPSPYRIGDPI 647
Query: 513 KLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGF 572
+++QI+ NL+SN++KFT GH+ V A + + R +
Sbjct: 648 RIRQIVSNLLSNAIKFTDAGHVRVAAHAASDAAH----GTGRTAGGAPV----------- 692
Query: 573 DDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632
E V DTG GIP+ Q +IF + Q ++ G GLGL
Sbjct: 693 -----------------VEIVVADTGIGIPEAAQAAIFGLYRQADDSIHRRYGGTGLGLA 735
Query: 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEE 679
+ + ++ M G+IA++ PG G FR + L VC+ ER D E
Sbjct: 736 LCRRLLDAMSGDIAVS-SAPGA-GSTFRVRIPLP-VCDDERGDASAE 779
>gi|408793170|ref|ZP_11204780.1| PAS domain S-box protein [Leptospira meyeri serovar Hardjo str.
Went 5]
gi|408464580|gb|EKJ88305.1| PAS domain S-box protein [Leptospira meyeri serovar Hardjo str.
Went 5]
Length = 1164
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 139/295 (47%), Gaps = 56/295 (18%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAE----NLGLIRT 438
A E AE+ S K+ LA SH++R L +IG +L T+L + + +
Sbjct: 645 ARENAEKASQAKSDFLANMSHEIRTPLNGVIGFSDLLMR-----TELNQVQKKYMETVYL 699
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
+ LL ++N +++ SKIE+GKMEL +E N+ +LL ++ ++ H +KG++++L+
Sbjct: 700 SANSLLDLINDILDFSKIESGKMELYKERINIYELLHQIAEIVKHKAYEKGLELILN-IS 758
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
V + V D ++L+QIL NL+ N++KFT +G I ++ + + K
Sbjct: 759 PKVPRNIFV--DSLRLRQILLNLIGNALKFTLKGEIQIKISAEPK--------------- 801
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
+ N +F FEV DTG GI + Q+ IFE F Q
Sbjct: 802 -------------------------DNNEYEFLFEVIDTGIGISPENQDKIFEVFSQADT 836
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
+ G GLGL I +++L ++ + ER RF LT + + ER
Sbjct: 837 STTRQFGGTGLGLSISSKLLNLFDSKMQLE----SERDKGSRFYFKLTTLADNER 887
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 22/136 (16%)
Query: 964 KFLVVEDDAIVLKVTSAVLGK--LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
K ++VED+ + + +T A++ K G NG A ++ + L I
Sbjct: 1043 KVMIVEDNPVNMMLTKAIVQKSLPGTIIIEAENGALAVENFIQTEPQL-----------I 1091
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD +MP MNG++AT+ IRK E V PIIALTA ++G + ++ GM+ +++KP+
Sbjct: 1092 FMDVQMPEMNGYDATKAIRKLENGKSV--PIIALTAGTLSGEEERCLECGMNDYISKPV- 1148
Query: 1082 KDKLLDVVKSIDETME 1097
V+K+I E M+
Sbjct: 1149 ------VLKTIAEKMK 1158
>gi|320353300|ref|YP_004194639.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
2032]
gi|320121802|gb|ADW17348.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
2032]
Length = 1282
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 144/302 (47%), Gaps = 45/302 (14%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN 432
L AA+++ +AE S K+ LA SH++R + AIIG+ L + +
Sbjct: 741 LEAAIVRAERLAREAESASRAKSQFLANMSHEIRTPMNAIIGMTHLAMQTRD-DDKRGRF 799
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
L +R ++ LLG+LN +++ SK+EAG+++L F+ QLLEEV+ +KG+ +
Sbjct: 800 LDTVRHSAESLLGLLNDILDFSKMEAGQLKLSTAPFSPRQLLEEVMATLQMPAGEKGLRL 859
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
+D L C V GD ++L+QIL NLV N++KFT+ G I++R ++ S
Sbjct: 860 AMDIAPN--LPPCLV-GDDLRLRQILLNLVGNAIKFTAAGSITLRITQEQPS-------- 908
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
G + L F V DTG GI ++K+ IF
Sbjct: 909 ----------------SGGSEPL--------------IHFTVIDTGIGIAEEKRALIFNS 938
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
F Q + + G GLGL I + +V LM G+I + + +G F V L VC++
Sbjct: 939 FEQADNSYVRQYGGTGLGLSICKQLVTLMGGKIWVESRI--NQGSAFHVLVPL-PVCDQP 995
Query: 673 RP 674
P
Sbjct: 996 LP 997
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 31/162 (19%)
Query: 951 SDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLR 1010
+D + + G + LVV+D+ + V S +L + + NG EA + L+ R
Sbjct: 1001 ADREAAAAKRTGLRILVVDDNEVNRDVASMLL-EGEHRVNTAGNGLEAL----RALALNR 1055
Query: 1011 KEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDV-------------------HIP 1051
YD ++MD +MPV++G AT IR E+Q + H+
Sbjct: 1056 -------YDVVLMDVQMPVLDGLAATTAIRAIEQQRPLAIELPPEISDPLAANLKGRHLT 1108
Query: 1052 IIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSID 1093
I+A+TAHAM G + AGMD ++TKP Q +LL+V+ D
Sbjct: 1109 IVAMTAHAMGGDREMCLAAGMDTYITKPFQPGQLLEVLGPFD 1150
>gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
BAA-798]
gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
BAA-798]
Length = 1363
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 139/299 (46%), Gaps = 51/299 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A +QA S K+ +A SH++R L AIIG+ EL +D E + I+T S+
Sbjct: 832 RARDQAIEASRLKSEFVANMSHEIRTPLNAIIGMTELL-QDTPLSERQREFVQTIQTSSQ 890
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDG 499
LL I+N +++ SKIEAGKM L E +F+L L+E +M KG+ ++ +DP
Sbjct: 891 SLLSIINDILDFSKIEAGKMVLEEVDFDLVSLVEGTSEMLAGAARGKGISLMTFVDPTIP 950
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
L GD +L+Q+L NL+SN++KFT +G + +R + +R S+
Sbjct: 951 RTL-----IGDPARLRQVLLNLLSNAVKFTEQGEVLLR------------VLPHRAADSE 993
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
++ FEV DTG GI +F+ F Q +
Sbjct: 994 ----------------------------VELLFEVRDTGIGIDSAHLGKLFQPFTQADAS 1025
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDE 678
G GLGL I +++V LM G I A+ +PG G FRF V ER T +
Sbjct: 1026 TTRRYGGTGLGLTISKTLVELMGGTI-WAESQPGV-GSTFRFTARFK-VAAMERSPTQQ 1081
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 12/139 (8%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K L+ ED+ + ++ + L KLG NG+EA + + + + Y ++
Sbjct: 1232 KPILLAEDNPVNRRLATLQLEKLGYSVRTVDNGREAVEEMAR---------RGQEYCLVL 1282
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MDC+MP M+G+EATR IR+ E + PIIALTA+A+ G + AGMD +L+KPL
Sbjct: 1283 MDCQMPEMDGYEATRQIRRLETKSGRRTPIIALTANALEGDREACLAAGMDDYLSKPLTM 1342
Query: 1083 DKL---LDVVKSIDETMEK 1098
KL LD + +EK
Sbjct: 1343 GKLKAVLDRWAGTQQVVEK 1361
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LVV+D A ++ + L + E +G +A + + + +D ++D
Sbjct: 1091 LVVDDQAAHRQILRSYLESWHMRCEEAADGAQAIE-----------KAQREHFDLAILDL 1139
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+P +G++ + +R+ + ++ LTAH G + VDAG +L KP+++ +L
Sbjct: 1140 LLPDTDGFDLAQQLRR----LSPSMKLVLLTAHHEQGQGERAVDAGFSAYLLKPIRQSQL 1195
Query: 1086 LDVVKSIDETMEKQ 1099
+DV+ +I E Q
Sbjct: 1196 MDVLANISARKEPQ 1209
>gi|298528280|ref|ZP_07015684.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511932|gb|EFI35834.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 940
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 150/304 (49%), Gaps = 51/304 (16%)
Query: 359 FIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVEL 418
F +LI+ + + L ++ +Q AT+QA+ + K+ LA SH++R + I+G+++L
Sbjct: 450 FAMLISSLSWSNLELARSVHEQKVATQQADVANKAKSEFLANMSHEIRTPINGIMGILQL 509
Query: 419 CHE-DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEV 477
+ +P N+G++ + L +L+ ++++S+IEAG+ME+ +E+ +L +L + V
Sbjct: 510 LQSTELSPEQQEYTNMGIV--SASRLTRLLSDILDLSRIEAGQMEIRKEQVDLKKLCDSV 567
Query: 478 VDMYYHVGIKKGV--DVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHIS 535
+++ +K + + DPC VL GD +L+QI+ NLV N++KFT EG IS
Sbjct: 568 DELFMVTSREKDISLEFTQDPCLPQVL-----LGDEARLQQIVFNLVGNALKFTQEGRIS 622
Query: 536 VRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVD 595
V ++++ R ++ L V
Sbjct: 623 VNWHLQQR----------RGRDARVL------------------------------LTVS 642
Query: 596 DTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGER 655
DTG G+ D + +F+ F Q + +G GLGL IV+ +V LM G +A+ D PG+
Sbjct: 643 DTGIGMTDDTLDELFKPFAQAENAFTRRYQGAGLGLSIVKRLVELMHGTLAV-DSTPGQG 701
Query: 656 GVCF 659
F
Sbjct: 702 STFF 705
Score = 46.2 bits (108), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 1049 HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
IPIIALTA+AM G + + AGMD +L KP+QK+ L V+
Sbjct: 895 RIPIIALTAYAMDGDRERFLHAGMDDYLAKPVQKEDLERVL 935
Score = 42.0 bits (97), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+ EDD +L K G + + NG++ V +L+D +D I+M
Sbjct: 734 KILLAEDDPSNQFPMKLLLEKSGHQVSLAENGEQ----VLTMLADQE-------FDCILM 782
Query: 1024 DCEMPVMNGWEATRLIRKEE 1043
D MPVM+G EATR IR E
Sbjct: 783 DIHMPVMDGVEATRRIRSME 802
>gi|383454339|ref|YP_005368328.1| sensory box histidine kinase/response regulator [Corallococcus
coralloides DSM 2259]
gi|380732170|gb|AFE08172.1| sensory box histidine kinase/response regulator [Corallococcus
coralloides DSM 2259]
Length = 909
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 127/283 (44%), Gaps = 45/283 (15%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA-NP-GTDLAENLGLIRTC 439
A + AE + K+ LA SH++R + AIIG+ L + A P D A IR
Sbjct: 232 RARQSAEDANQAKSLFLATVSHEIRTPMNAIIGMAGLLMDTALTPEQRDFAST---IRQS 288
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
LLG+LN +++ SKIEAG++EL ++ FNL Q +E V+D+ +K +D+ D
Sbjct: 289 GDALLGLLNDMLDFSKIEAGRVELEQQPFNLRQCVESVLDLLAMRASEKSLDLGYHVTDE 348
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
+ V GD +L+Q+L NLV N++KFT G +S+ ++
Sbjct: 349 T---PVSVVGDGARLRQVLLNLVGNAVKFTERGGVSISVDTPRQPLAPG----------- 394
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
L + F V DTG GI + + +F+ F Q+ E+
Sbjct: 395 --------------------------GLFELHFAVQDTGLGITEAARAGLFQPFNQLNES 428
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
G GLGL I + +V M G + + + +G F F
Sbjct: 429 VSRRYGGTGLGLAISKRLVEAMGGRLWMESEGVPGKGATFHFT 471
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 20/137 (14%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED+ K+ VL +LG + NG+E + RK YD ++M
Sbjct: 644 RILLVEDNPTNQKLALLVLERLGYPADTANNGREGLSLIS------RKR-----YDVVLM 692
Query: 1024 DCEMPVMNGWEATRLIRKE----EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
D +MP ++G +ATR +R++ E+ + +IA+TA+AM + +DAGMD L+KP
Sbjct: 693 DVQMPELDGLQATRQLRQDMPVSEQPW-----VIAMTANAMTADRRECLDAGMDDFLSKP 747
Query: 1080 LQKDKLLDVVKSIDETM 1096
++ ++L+ ++ E +
Sbjct: 748 IRVEELISALRRAWERL 764
>gi|302337012|ref|YP_003802218.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
11293]
gi|301634197|gb|ADK79624.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
11293]
Length = 944
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 146/299 (48%), Gaps = 48/299 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGT-DLAENLGLIRTCS 440
A + A S +K+ LA SH++R L+ I+G+ +L + P T D ENL L++
Sbjct: 418 QARQMAVTASDSKSRFLANISHEIRTPLSGIMGMTDLLL--SGPLTEDQRENLFLMKEAE 475
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL I+N V+E+SKIE+GK+ L E F L + + + +KG +VLD D S
Sbjct: 476 ELLLDIINKVLEISKIESGKLSLELEPFRLRGAINKAALPIFMGCKEKG--IVLD-IDVS 532
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ GD +L Q+L N +SN++KFT G I++ ++ ++RN K
Sbjct: 533 PSIPDRLIGDGSRLTQVLTNFLSNALKFTESGTITL-----------TVVETSRNENGKI 581
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+LF F V DTG GIP D Q +IF++F Q+
Sbjct: 582 --ELF--------------------------FSVKDTGIGIPSDAQTTIFDDFRQIDSGP 613
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEE 679
+G GLGL I + +V LM G I + + G +G F F+ + T + E E P+T E
Sbjct: 614 AKRHQGTGLGLAISKKLVELMDGSIGVESE--GGQGSRFFFSAMFTLLDEGE-PETGNE 669
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 73/124 (58%), Gaps = 12/124 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ + + S L + G + NG+EA + L++E P+D I+M
Sbjct: 680 RVLLAEDNELNQRSISYFLEEAGHLVTIAANGREAIEV-------LKRE----PFDLILM 728
Query: 1024 DCEMPVMNGWEATRLIRKEEEQ-YDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D +MP M+G EAT +IR ++ ++ +IPIIALTA+A+ + + AGMD +TKP++K
Sbjct: 729 DVQMPEMDGMEATGIIRSHTDRLFNPNIPIIALTAYALKEDELRFIAAGMDRFVTKPIKK 788
Query: 1083 DKLL 1086
+ L
Sbjct: 789 ELLF 792
>gi|398997241|ref|ZP_10700070.1| PAS domain S-box [Pseudomonas sp. GM21]
gi|398124458|gb|EJM13968.1| PAS domain S-box [Pseudomonas sp. GM21]
Length = 1251
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 136/277 (49%), Gaps = 52/277 (18%)
Query: 375 AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN-- 432
AA + A + AE + K+ LA SH++R + AIIG+ L T+L++
Sbjct: 642 AAAQEMEQARQLAEDSARIKSEFLANMSHEIRTPMNAIIGMTYLTLR-----TELSDRQR 696
Query: 433 --LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV 490
L +++ S+ LLG++N +++ SKIEAGK++L +F+LAQLLEEV+D + KG+
Sbjct: 697 DYLNKVQSSSRHLLGVINDILDFSKIEAGKLQLEVRDFSLAQLLEEVLDQIHPRVADKGL 756
Query: 491 DVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDII 550
D+ ++ +RGD ++L+QIL N +SN++KFT G I V +++
Sbjct: 757 DMRINVAADV---PERLRGDPLRLRQILLNYLSNAVKFTERGQIRVEVSLRHA------- 806
Query: 551 ASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIF 610
G DD + F V D+G G+ ++ N++F
Sbjct: 807 --------------------GADD-------------VLLNFSVTDSGIGLSSEQLNNMF 833
Query: 611 EEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
+ F Q + G GLGL I + + LM G++ +
Sbjct: 834 QSFQQADTSTTRRFGGTGLGLAIAKQLSELMGGQVGV 870
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 76/142 (53%), Gaps = 14/142 (9%)
Query: 955 CSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK 1014
C + G + L+VED+ + +V + +L +G ++ +G++A + +
Sbjct: 904 CDWRVAEGTRVLLVEDNELNQQVAAELLQAVGCSVDIAADGRQALNRL-----------S 952
Query: 1015 ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDF 1074
A YD + MD +MPV++G EATRL+R + +P++A+TA+A + AGM+
Sbjct: 953 AERYDLVFMDMQMPVLDGLEATRLLRGQPGLST--LPVVAMTANASKRDHDACLAAGMND 1010
Query: 1075 HLTKPLQKDKLLDVVKS-IDET 1095
++KP + L V++ ++ET
Sbjct: 1011 FISKPFEPQTLYVVLRRWLNET 1032
>gi|224075549|ref|XP_002304678.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222842110|gb|EEE79657.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1029
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 157/304 (51%), Gaps = 29/304 (9%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL-AENLGLIRTC 439
M ++AE + K+ LA SH++R + ++G++ + + T+L A +RT
Sbjct: 441 MELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMD-----TELDATQQDYVRTA 495
Query: 440 S---KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
K L+ ++N V++ +KIE+GK+EL +F+L +++EV+ ++ +KGV++ +
Sbjct: 496 QDSGKALVSLINEVLDQAKIESGKIELEAMQFDLRAIMDEVLALFSGKAHEKGVELAVYV 555
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKK---SFKQDIIASN 553
DG + GD + +QI+ NL+ NS+KFT +GHI + + ++ S + +S+
Sbjct: 556 SDGV---PEILIGDPGRFRQIITNLMGNSIKFTKKGHIFLTVHLVEEVMDSIDVETESSS 612
Query: 554 RNVIS------KCLSKLFFR--NKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDK 605
RN +S +C S + F+ N EG + + +L+ V+DTG+GIP +
Sbjct: 613 RNTLSGLPVADRCRSWVGFKTFNPEG----SSHTLSPSSSDLINLIVSVEDTGEGIPLEA 668
Query: 606 QNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
Q +F F+QV + G G+GL I + +V LM G+I + G F F +
Sbjct: 669 QPRVFTPFMQVDPSISRKYGGTGIGLSISKCLVGLMNGDIGFVSIP--DIGSTFTFTAVF 726
Query: 666 TAVC 669
+ C
Sbjct: 727 SNGC 730
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 12/129 (9%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
K L G+K L+V+D+ + L V +A L K GA +G++A K+L K
Sbjct: 897 RKLLVGRKMLIVDDNKVNLMVAAAALKKYGADVVCADSGQKAI----KLLKPPHK----- 947
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
+D MD +MP M+G+EATR IR E + HIPI+A+TA + + GMD ++
Sbjct: 948 -FDACFMDIQMPEMDGFEATRRIRDMESNW--HIPILAMTADVIQATYEECQRCGMDGYV 1004
Query: 1077 TKPLQKDKL 1085
+KP + ++L
Sbjct: 1005 SKPFEAEQL 1013
>gi|399994314|ref|YP_006574554.1| signal transduction histidine kinase [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|398658869|gb|AFO92835.1| signal transduction histidine kinase [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
Length = 764
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 130/272 (47%), Gaps = 45/272 (16%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R + ++G+ EL D N + I+ + LL I+N V++
Sbjct: 216 KSAFLANMSHEIRTPMNGVVGMAELL-SDTNLSDEQQLYANTIKNSGEALLVIINDVLDY 274
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIEA K+EL E F+L + + EV+ + KG+ ++L D + GD +
Sbjct: 275 SKIEAQKLELHPEPFDLERSVHEVLMLLQPTARDKGLTLLL---DYDLFLPTSFVGDPGR 331
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
++Q+L NLV N++KFTSEGH++++ I N K S
Sbjct: 332 IRQVLTNLVGNAVKFTSEGHVALQ------------ITGISNAGDKICS----------- 368
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
++DTG GIP++K IF EF QV++ EG GLGL I
Sbjct: 369 ----------------IHVTIEDTGIGIPEEKVQDIFGEFNQVEDERNRQFEGTGLGLAI 412
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+ ++ LM GEI + +E +G CF F + L
Sbjct: 413 SKRLIELMGGEIWVESQE--GKGSCFGFRMEL 442
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L ED+ V ++ L + NG EA + DL I M
Sbjct: 628 RVLAAEDNRTNQLVFRKMVKDLNIDLQFVSNGIEAVEVYQSFQPDL-----------IFM 676
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MPVM+G EAT+ IR E ++ P++ALTAHAMAG + I+ AG+D +LTKPL+K
Sbjct: 677 DISMPVMDGKEATQKIRALEHGTGIYTPVVALTAHAMAGDSDGILAAGLDHYLTKPLRK 735
>gi|146307980|ref|YP_001188445.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina ymp]
gi|145576181|gb|ABP85713.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina ymp]
Length = 914
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 155/328 (47%), Gaps = 53/328 (16%)
Query: 348 MFIAGVISLGLFIILIAKA---AKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHD 404
+F A + +G+ I LI + A R L + A EQA +S K+ LAK SH+
Sbjct: 359 VFGATAVKIGVTIELITLSIGLADRINLLKEEGFQSRRAAEQAAFESQAKSRFLAKMSHE 418
Query: 405 VRASLAAIIGLVELCHEDANPGTDLAENLGL--IRTCSKDLLGILNSVMEMSKIEAGKME 462
+R L ++G+++L E D ++ + I + L+ ++N +++ ++IE+GK+
Sbjct: 419 IRTPLNGVLGMLQLLRETP---LDRSQRFYVDTISSSGSSLMAVINDILDYARIESGKLS 475
Query: 463 LVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLV 522
L + EF+L ++ E + ++ + K + + + +G V ++GD +LKQ+L NL+
Sbjct: 476 LEQIEFDLEDMISETLSLFTGQALDKRLRLYVS-LEGGV--PRRIQGDPTRLKQVLMNLL 532
Query: 523 SNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVE 582
SN++KFT+EGH++V + + S Q
Sbjct: 533 SNALKFTAEGHVAVSVSRRSDSHGQ----------------------------------- 557
Query: 583 RNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMK 642
P+L+ F V D+G GI + +FE F Q + G GLGL I + +V +M
Sbjct: 558 --PHLV---FAVSDSGIGISEQALAKLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMG 612
Query: 643 GEIAIADKEPGERGVCFRFNVLLTAVCE 670
G I + PG+ G F F++ L E
Sbjct: 613 GRIEV-QSTPGQ-GTRFAFDIPLLEAPE 638
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 82/186 (44%), Gaps = 21/186 (11%)
Query: 908 EASSQELQHCTDPNPLNKLKS--FGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKF 965
E+ LQH P +N L+ G H + + + D C
Sbjct: 739 ESKGLRLQHLAQPLAINALRQALTGLYEEPRAQVHHLVREVRSDKGDAPC---------I 789
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LV ED+ + V L K G + +G+ A D + + ++ I+MDC
Sbjct: 790 LVAEDNPVNQLVVQGFLKKRGYSVRLVTDGQAAVDEYSRDPAAVQ---------LILMDC 840
Query: 1026 EMPVMNGWEATRLIRK-EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
EMPVM+G+EATR IR+ E Q +PIIALTAH + +DAGMD L KPL
Sbjct: 841 EMPVMDGFEATRQIRRLEHSQQLGAVPIIALTAHILDEHRQHGMDAGMDDFLGKPLDSKL 900
Query: 1085 LLDVVK 1090
L ++
Sbjct: 901 LYSTLE 906
>gi|392425027|ref|YP_006466021.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
gi|391354990|gb|AFM40689.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
Length = 810
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 139/284 (48%), Gaps = 42/284 (14%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
I+ A E+AE+ S+ K+ LA SH++R L +G+++L + ++ D L + +
Sbjct: 320 IELRKAKEEAEKASIAKSEFLANMSHEIRTPLNGTMGMIDLVLQ-SSLKPDQHNYLQVAK 378
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
C+ LL I+N V++ SKIEAGKM FNL LLEE+V ++ KG+ ++ C
Sbjct: 379 NCAYSLLNIINDVLDFSKIEAGKMLTETINFNLKDLLEELVKVHTVNAAGKGLGLI---C 435
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
S +++GD +++Q+L NLVSN++KFT G+I V+
Sbjct: 436 TCSADVPAYLKGDPNRIRQVLNNLVSNAVKFTHSGNIVVQV------------------- 476
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
RN + ++ + + EF V DTG GI +D+ +F+ F QV
Sbjct: 477 ---------RNTKPINESETMACA--------LEFSVSDTGIGIAEDEMEKLFKSFSQVD 519
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
+ G GLGL I + + LM G + + ++ +G F F
Sbjct: 520 GSHTRKYGGTGLGLIISKQLTELMGGRMWVESQKG--KGSTFSF 561
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 16/162 (9%)
Query: 935 ASISSHCSSLQQVAAQSDGKCSEKPLNGKKF----LVVEDDAIVLKVTSAVLGKLGAKFE 990
S S L+Q + + + S +P+ ++ L+VED+ + V + +L G K
Sbjct: 556 GSTFSFILELRQGESAGEVEPSSEPMEKEQLSVTILLVEDNLVNQDVLTKMLQIGGHKVH 615
Query: 991 VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHI 1050
NG EA D + + +D I+MD MP MNG EAT+LIR E E+
Sbjct: 616 KACNGLEALDAL-----------EQQDFDLIIMDIYMPEMNGIEATKLIR-ENERNKKRT 663
Query: 1051 PIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
PIIALTA+A+ G + + GMD +L+KP+ ++LL+ V+ +
Sbjct: 664 PIIALTAYALKGDRERFLARGMDEYLSKPVLIEELLNTVQKV 705
>gi|359727069|ref|ZP_09265765.1| histidine kinase response regulator hybrid protein [Leptospira
weilii str. 2006001855]
Length = 821
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 140/292 (47%), Gaps = 46/292 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 424 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYIQILSVSA 482
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L +E F++ +L+E+ D+ Y + +K + + L +G
Sbjct: 483 KSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHDLLYPLAKQKRIGLRL---EGK 539
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+V GD+++L+QIL NL N +KFT+ G + + S +N+
Sbjct: 540 FEIQEYVYGDQLRLRQILWNLTGNGIKFTNRGEVVLS-------------VSQKNI---- 582
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
S+++ + EF V D+G GIP +KQ +F+ F Q +
Sbjct: 583 -------------------SIDK----ISIEFRVSDSGIGIPLEKQKQVFDAFSQSDTST 619
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
G GLGL I + +V L G + + KE G F F + E E
Sbjct: 620 ARKFGGSGLGLSITKQLVELQGGTLNLESKEG--YGSKFTFAITYGIPSESE 669
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV ED+ + L KLG V NG+E + + + +D I+M
Sbjct: 695 RILVAEDNETNCLLIERALKKLGYDPVVVHNGREVIEKM-----------QLNVFDMILM 743
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D MP ++G EAT+ IR +++ + I IIALTA + + GM+ +L KPL
Sbjct: 744 DIHMPEVDGMEATKWIRSQKQNAEFPI-IIALTADVIESNKEMYISKGMNDYLAKPL 799
>gi|336429640|ref|ZP_08609602.1| hypothetical protein HMPREF0994_05608 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336002203|gb|EGN32319.1| hypothetical protein HMPREF0994_05608 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 936
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 162/336 (48%), Gaps = 61/336 (18%)
Query: 338 NKLSLMLLVLMFIAGVIS--------LGLFIILIAKAAKREMFLCAALIKQMNATEQAER 389
N+L+LM L+ + ++ L +F+ I +A R AAL+K + E+AE
Sbjct: 501 NELTLMELIYAYPVAFVAVLTLFLSVLSVFLFGIYRARMR-----AALMK--SNLEKAEA 553
Query: 390 KSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNS 449
+S K L++ SH++R + A+IGL +L ++ +NL +RT S +L ++N
Sbjct: 554 ESRAKGEFLSRMSHELRTPMNAVIGLTDLTGMMEGVPPEVQKNLSKLRTASHYMLDLIND 613
Query: 450 VMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRG 509
+++MS+I++GK+ L + F+L +L+ + M +KG+ L+ ++ S + G
Sbjct: 614 ILDMSRIDSGKLTLANDPFSLDNILDGIRMMMESEAQRKGLVFTLEK---RIVHSSLI-G 669
Query: 510 DRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNK 569
D ++L+Q+L NL+SN+ KFT G ++ R
Sbjct: 670 DGIRLRQVLVNLLSNAFKFTPAG-----------------------------GNVYLR-- 698
Query: 570 EGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629
+ E F F V DTG GI + Q IF+ F QV T+ +G GL
Sbjct: 699 --------VTEEEGTEEEAAFTFRVIDTGTGITPEDQKRIFDSFEQVG-TSYSKSQGTGL 749
Query: 630 GLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
GL I +++V M GE+ ++ +PGE G F F V L
Sbjct: 750 GLAISRNIVLKMGGELKVS-SQPGE-GSEFFFTVTL 783
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
+K L G L+ ED+ + ++ + +L GAK NG++A + + E +
Sbjct: 802 DKSLEGVPILMAEDNDLNAEIAAQLLEIQGAKVSRSVNGRQAVE--------MFSESRPG 853
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
+ I+MD +MP MNG EA R IR + IPI+A+TA+ + + AGMD +
Sbjct: 854 EFRVILMDIQMPEMNGLEAARAIRSLDRPDAAGIPIVAMTANTFTEDVDEAMAAGMDEFI 913
Query: 1077 TKPL 1080
KPL
Sbjct: 914 PKPL 917
>gi|89892466|gb|ABD79028.1| histidine kinase SHK278 [Striga asiatica]
Length = 1002
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 148/293 (50%), Gaps = 13/293 (4%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
+ M +AE + K+ LA SH++R + ++G++++ D + + R
Sbjct: 421 QMMELKRRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM-DTRLDETQQDYVRTARE 479
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
K L+ ++N V++ +KIE+GK+EL F+L +L++V+ ++ K V++ +
Sbjct: 480 SGKALVSLINEVLDQAKIESGKLELEAVSFDLRAILDDVLSLFSGKSQDKKVELAV--YV 537
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIA----SNR 554
S + S + GD + +QI+ NLV NS+KFT +GHI V + ++ + + S
Sbjct: 538 SSKVPSTLI-GDPGRFRQIVTNLVGNSIKFTDKGHIFVTVYLVEEVMETEAETGSSLSGL 596
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
V+ + S FR F + +P+ + V+DTG+GIP + Q+ +F F+
Sbjct: 597 PVVDRRRSWSRFRV---FSQDNNTPLAGSSPDQVNVMVSVEDTGQGIPVEAQSRVFNPFM 653
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
QV + G G+GL I + +V LMKGEI +A + G F F + TA
Sbjct: 654 QVGPSITRTHGGTGIGLSISKCLVQLMKGEIGLASTP--QVGSTFTFTAVFTA 704
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 44/152 (28%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFD--------HVCKILSDLRK 1011
L G++ LVV+D+ + L+V + L K GA GKEA H C
Sbjct: 850 LQGRRILVVDDNRVNLRVAAGCLKKYGADVVHAERGKEAISLLTPPHLFHAC-------- 901
Query: 1012 EGKALPYDYIMMDCEMPVMNGWEATRLIRKEE--------------EQY----DVHIPII 1053
MD +MP M+G+EATR IR E E Y + H+PI+
Sbjct: 902 ----------FMDIQMPEMDGFEATRRIRDIESGINKGIEDGRLSLESYGNVSNWHVPIL 951
Query: 1054 ALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
A+TA + + + GMD +++KP + D+L
Sbjct: 952 AMTADVIQATSEECSKCGMDGYVSKPFEADQL 983
>gi|190148361|gb|ACE63263.1| histidine kinase 3B [Populus trichocarpa]
Length = 1019
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 157/304 (51%), Gaps = 29/304 (9%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL-AENLGLIRTC 439
M ++AE + K+ LA SH++R + ++G++ + + T+L A +RT
Sbjct: 431 MELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMD-----TELDATQQDYVRTA 485
Query: 440 S---KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
K L+ ++N V++ +KIE+GK+EL +F+L +++EV+ ++ +KGV++ +
Sbjct: 486 QDSGKALVSLINEVLDQAKIESGKIELEAMQFDLRAIMDEVLALFSGKAHEKGVELAVYV 545
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKK---SFKQDIIASN 553
DG + GD + +QI+ NL+ NS+KFT +GHI + + ++ S + +S+
Sbjct: 546 SDGV---PEILIGDPGRFRQIITNLMGNSIKFTKKGHIFLTVHLVEEVMDSIDVETESSS 602
Query: 554 RNVIS------KCLSKLFFR--NKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDK 605
RN +S +C S + F+ N EG + + +L+ V+DTG+GIP +
Sbjct: 603 RNTLSGLPVADRCRSWVGFKTFNPEG----SSHTLSPSSSDLINLIVSVEDTGEGIPLEA 658
Query: 606 QNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
Q +F F+QV + G G+GL I + +V LM G+I + G F F +
Sbjct: 659 QPRVFTPFMQVDPSISRKYGGTGIGLSISKCLVGLMNGDIGFVSIP--DIGSTFTFTAVF 716
Query: 666 TAVC 669
+ C
Sbjct: 717 SNGC 720
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 12/129 (9%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
K L G+K L+V+D+ + L V +A L K GA +G++A K+L K
Sbjct: 887 RKLLVGRKMLIVDDNKVNLMVAAAALKKYGADVVCADSGQKAI----KLLKPPHK----- 937
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
+D MD +MP M+G+EATR IR E + HIPI+A+TA + + GMD ++
Sbjct: 938 -FDACFMDIQMPEMDGFEATRRIRDMESNW--HIPILAMTADVIQATYEECQRCGMDGYV 994
Query: 1077 TKPLQKDKL 1085
+KP + ++L
Sbjct: 995 SKPFEAEQL 1003
>gi|456864281|gb|EMF82680.1| GHKL domain protein [Leptospira weilii serovar Topaz str. LT2116]
Length = 603
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 134/271 (49%), Gaps = 44/271 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 206 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYIQILSVSA 264
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L +E F++ +L+E+ D+ Y + +K + + L +G
Sbjct: 265 KSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHDLLYPLAKQKRIGLRL---EGK 321
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+V GD+++L+QIL NL N +KFT+ G + + +V +K+ +D I+
Sbjct: 322 FEIQEYVYGDQLRLRQILWNLTGNGIKFTNRGEVVL--SVSQKNISKDKIS--------- 370
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
EF V D+G GIP +KQ +F+ F Q +
Sbjct: 371 -----------------------------IEFTVSDSGIGIPLEKQKQVFDAFSQSDTST 401
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651
G GLGL I + +V L G + + KE
Sbjct: 402 ARKFGGSGLGLSITKQLVELQGGTLNLESKE 432
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV ED+ + L KLG V NG+E + + + +D I+M
Sbjct: 477 RILVAEDNETNCLLIERALKKLGYDPVVVHNGREVIEKM-----------QLNVFDMILM 525
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D MP ++G EAT+ IR +++ + I IIALTA + + GM+ +L KPL
Sbjct: 526 DIHMPEVDGMEATKWIRSQKQNAEFPI-IIALTADVIESNKEMYISKGMNDYLAKPL 581
>gi|225425392|ref|XP_002276961.1| PREDICTED: histidine kinase 3 [Vitis vinifera]
gi|297738469|emb|CBI27670.3| unnamed protein product [Vitis vinifera]
Length = 1039
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 159/307 (51%), Gaps = 31/307 (10%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL-AENLGLIRTC 439
M ++AE + K+ LA SH++R + ++G++ + + TDL +RT
Sbjct: 431 MMLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLID-----TDLDVTQQDYVRTA 485
Query: 440 S---KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
K L+ ++N V++ +KIE+GK+EL E +F+L +L++V+ ++ +KGV++ +
Sbjct: 486 QASGKALVSLINEVLDQAKIESGKLELEELQFDLQAILDDVLSLFSGKSQEKGVELAVYI 545
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKK---SFKQDIIASN 553
D + GD + +QI+ NL+ NS+KFT +GHI V + ++ S + + +S+
Sbjct: 546 SDRV---PKMLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTIHLVEELMDSIEVETESSS 602
Query: 554 RNVIS-------KCLSKLFFR--NKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
+N +S +C S FR N+EG + S + L+ V+DTG GIP++
Sbjct: 603 KNTLSGLPVADRRC-SWEGFRTFNQEGLTSPFSSSSSD----LIHLIVSVEDTGVGIPEE 657
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
Q+ +F F+QV + G G+GL I + +V LM GEI + G F F +
Sbjct: 658 AQSRVFTPFMQVGPSISRIHGGTGIGLSISKCLVGLMNGEIGFVSRP--NVGSTFTFTAV 715
Query: 665 LTAVCER 671
+ C +
Sbjct: 716 FSGGCSK 722
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 28/144 (19%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G+K LVV+D+ + L+V + L K GA +GK A + K D +D
Sbjct: 890 LRGRKILVVDDNNVNLRVAAGALKKYGADVVCADSGKSAIP-LLKPPHD---------FD 939
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEE--------------EQY----DVHIPIIALTAHAMA 1061
MD +MP M+G+EAT +IR+ E E Y + H+PI+A+TA +
Sbjct: 940 ACFMDIQMPEMDGFEATGIIREMERNVNSRIQHGEVSVEAYANISNWHLPILAMTADVIQ 999
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKL 1085
+ + GMD +++KP + ++L
Sbjct: 1000 ATHEECLRCGMDGYVSKPFEAEQL 1023
>gi|410723500|ref|ZP_11362738.1| PAS domain S-box [Clostridium sp. Maddingley MBC34-26]
gi|410603209|gb|EKQ57650.1| PAS domain S-box [Clostridium sp. Maddingley MBC34-26]
Length = 671
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 131/272 (48%), Gaps = 54/272 (19%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCH--EDANPGTDLAENLGLIRTCSKDLLGILNSVM 451
K+ LA SH++R + IIG+++L E +N E L ++ S+ LLGILNSV+
Sbjct: 300 KSEFLANISHEIRTPMNGIIGVIDLLKVTELSNSQ---KEYLDMLSHSSRLLLGILNSVL 356
Query: 452 EMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGSCHVRG 509
++SKIE+GK EL + FNL + L+ ++ G K ++V +DP S + G
Sbjct: 357 DISKIESGKFELNLKPFNLKKTLDRIIKELSIAGNNKNLEVFYYIDPY-----ISFDLIG 411
Query: 510 DRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNK 569
D ++L QIL NL++N++KFT G I + K DII
Sbjct: 412 DEIRLNQILINLINNAIKFTESGQIIFKVK------KIDII------------------- 446
Query: 570 EGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629
N L EF V DTG GI ++ +N IF++FVQ T +G GL
Sbjct: 447 ---------------KNKLTLEFSVQDTGIGIKEEFKNDIFKKFVQQDMTYTKKYDGTGL 491
Query: 630 GLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
GL I + + LM G+I E +G F F
Sbjct: 492 GLAISRDIAKLMNGDIWFESIE--NKGSTFYF 521
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 72/124 (58%), Gaps = 11/124 (8%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+VED+ I +K+ ++ LG +FE +GK+A + + K +D I+MD
Sbjct: 555 LIVEDNEINMKIVCEMIKGLGYEFECAFDGKQALEIL-----------KENNFDLILMDI 603
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP +NG++ T++IR E HI IIA+TA++M G + ++ GMD +++KP L
Sbjct: 604 QMPELNGYDTTKIIRDSELGTQNHIYIIAMTAYSMNGDKERCIEMGMDDYISKPFDLSTL 663
Query: 1086 LDVV 1089
+V+
Sbjct: 664 NNVI 667
>gi|398847568|ref|ZP_10604470.1| signal transduction histidine kinase [Pseudomonas sp. GM84]
gi|398251442|gb|EJN36697.1| signal transduction histidine kinase [Pseudomonas sp. GM84]
Length = 1200
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 144/302 (47%), Gaps = 52/302 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGT-DLAENLGLIRTCSK 441
A +QA+ + K+ LA SH++R + A+IG++EL + AN G DLA +L + +K
Sbjct: 700 AKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRANQGQLDLA-SLEVAHHSAK 758
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
DLLG++ ++++ +IE+G + L E +A L+E V ++ +KG+ + + +
Sbjct: 759 DLLGLIGDILDIVRIESGHLSLSPEPVEVAALVESVGRIFEGQARQKGLALEV------I 812
Query: 502 LGS---CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
+GS CH D ++ KQIL NLVSN++KFT GH+ +
Sbjct: 813 IGSGARCHALLDPLRFKQILSNLVSNAIKFTEHGHVRI---------------------- 850
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
CLS R+ + EV D+G GI D +F FVQ
Sbjct: 851 -CLS---LRDA-------------KPTGTASLALEVRDSGIGIHDDDLQRLFNPFVQANP 893
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDE 678
+ G + G GLGL I +S+ +M G ++I K + G R + + V +P E
Sbjct: 894 HSQGARAGTGLGLAICRSLCEMMGGRLSI--KSLPDFGTQVRLILPVQCVGAPPQPSPME 951
Query: 679 ED 680
+D
Sbjct: 952 DD 953
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 923 LNKLKSFGAEAGASISSHC--SSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSA 980
+ L FG + + C + Q + D + + LN LV++D L + +
Sbjct: 922 IKSLPDFGTQVRLILPVQCVGAPPQPSPMEDDVEVPDPQLN---VLVIDDHPANLLLMAQ 978
Query: 981 VLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040
L LG +G+E D +EG +D +++DC MP MNG++ +R
Sbjct: 979 QLAYLGLSQTTASDGREGLDKW--------REGL---FDVLVLDCNMPHMNGYQLAAAVR 1027
Query: 1041 KEEEQYD-VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
EE + I+ TA+A V K + GMD L KP+
Sbjct: 1028 AEERRSKRPRCVILGYTANAQPEVRQKCLSVGMDDCLLKPI 1068
>gi|288940785|ref|YP_003443025.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
gi|288896157|gb|ADC61993.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
Length = 1053
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 108/406 (26%), Positives = 170/406 (41%), Gaps = 67/406 (16%)
Query: 280 SIANHSCVSDKGNPTKFNMKIMG-----------KKYIFYCSTLQIAGVQSVYVLAYDSN 328
S+++H D G+P + ++ + I G + D
Sbjct: 313 SVSHHQSFDDPGSPAHWMWAAAAEPGAIVTGLDDRRQPVMGIVVPIPGTSWFLLAKMDRR 372
Query: 329 G-LGSLVSRNNKLSL--MLLVLMFIAGVISLGLFIILIAKAAKREMFLCAAL-IKQM--- 381
L V R+ ++L +L + M + G+ L L +A E+ L ++Q+
Sbjct: 373 EILAGFVQRSIWITLAGLLAIFMSVTGLYLLRQRQQLQQRAHLEELVAARTLELRQLEVE 432
Query: 382 --NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTC 439
+ E AE + K+ LA SH++R + AI+GL L D T E LG I +
Sbjct: 433 LAHRAELAESATRAKSAFLANMSHEIRTPMNAILGLTHLLRRDGATATQ-NERLGKIESA 491
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
++ LL ILN ++++S+IE+G+++L + +F L LL++V + KG+ + ++
Sbjct: 492 TRHLLAILNDILDLSRIESGRLQLEDADFALESLLDQVRSLVADAAQSKGLTLSIE---- 547
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
S + GD +L+QIL N SN++KFT G + +RA R V
Sbjct: 548 STGLPRWLHGDVTRLRQILLNYASNAVKFTERGSVVLRA---------------RPVAE- 591
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
DD L FEV DTG GI ++ S+F F Q +
Sbjct: 592 -------------DDSGVL-----------VRFEVADTGIGIAPEQLASLFRAFSQADSS 627
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + LM GE A+ PG G F V L
Sbjct: 628 TTRRYGGTGLGLAINMQLAQLMGGETG-AESTPGV-GSTFWLQVRL 671
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 13/128 (10%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G + ++ ED+A+ +V +L +G + + NG+EA + L G+ + I
Sbjct: 698 GARLILAEDNAVNREVALDLLQAVGLQVDTAENGREAVE--------LAMTGR---HALI 746
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MD +MPVM+G EATRLIR D PI+A+TA+A ++AGM+ + KP+
Sbjct: 747 LMDVQMPVMDGLEATRLIRALSGWRDK--PILAMTANAFQEDRRHCLEAGMNDFVPKPVS 804
Query: 1082 KDKLLDVV 1089
L + +
Sbjct: 805 PRDLFETL 812
>gi|288959269|ref|YP_003449610.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
gi|288911577|dbj|BAI73066.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
Length = 1300
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 130/276 (47%), Gaps = 46/276 (16%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
AE S K+ LA SH++R + AI+GL+ L + G A+ + +R ++ LLGI
Sbjct: 486 AEAASRAKSEFLANMSHEIRTPMNAILGLIHLLQQTELTGRQ-ADYVQKVRVSAQSLLGI 544
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH 506
LN +++ SK+EAGK+EL +F L LL+ + + +K +DV+ L
Sbjct: 545 LNDILDFSKVEAGKLELERADFRLDDLLQTLAVIVGSAAQEKDIDVLFSVAPDVPL---E 601
Query: 507 VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFF 566
+ GD ++L+QIL NL N++KFT G + V S + +A + V+
Sbjct: 602 LVGDPLRLQQILINLAGNAIKFTETGEVVV-------SVRLRTLADDGAVL--------- 645
Query: 567 RNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEG 626
+F V DTG GI +++ +FE F Q + G
Sbjct: 646 ------------------------DFSVRDTGIGIAPEQRERLFEAFSQGDSSTTRRFGG 681
Query: 627 LGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662
GLGL I +V LM G + + + EPG +G FRF
Sbjct: 682 TGLGLAICARLVRLMNGAMDV-ESEPG-KGSVFRFR 715
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 11/118 (9%)
Query: 969 EDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP 1028
+D+AI +V +L + GA G++A D V ++D P+D +++D +MP
Sbjct: 930 DDNAISRQVAREILERAGADVTEAATGRQAVDRVR--MADQ-------PFDAVLLDVQMP 980
Query: 1029 VMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
M+G+ AT IR +PIIA+TA A+ + +D+GMD H+ KPL +L
Sbjct: 981 DMDGFAATAAIRAL--PVGRRLPIIAMTASALPADRQRCLDSGMDAHVPKPLDLPQLF 1036
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LVV+D+ +V ++ G C +G+ A D V + + G+A YD ++MD
Sbjct: 747 LVVDDNPTAREVLGEIVTAFGWAVTACGDGRSAIDEVERAAA----AGRA--YDVVLMDW 800
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
+MP M+G E R I + +P II ++ + + ++ + + L KP+
Sbjct: 801 KMPGMDGIETARRIHADA---GAGMPMIIVVSGYGRERMDARTEETAISGFLVKPVTAST 857
Query: 1085 LLDVV 1089
LLD V
Sbjct: 858 LLDAV 862
>gi|453085745|gb|EMF13788.1| hypothetical protein SEPMUDRAFT_84970 [Mycosphaerella populorum
SO2202]
Length = 1488
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 151/310 (48%), Gaps = 54/310 (17%)
Query: 349 FIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRAS 408
++ GV+ + + + + KAA + M + A+ S K+ LA SH++R
Sbjct: 806 YVDGVVGVSMDVTELKKAADEVQARDRENARLMAQSVAAKEASKMKSQFLANMSHEIRTP 865
Query: 409 LAAIIGLVELC--HEDANPGT------DLAENLGLIRTCSKDLLGILNSVMEMSKIEAGK 460
+A +IG+ EL +D+ G + AEN I+ + LL ++N +++ SK+E+G+
Sbjct: 866 IAGVIGMSELLLDEDDSASGKLTKEQRECAEN---IQRSANGLLTVINDILDFSKVESGR 922
Query: 461 MELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCN 520
+++ E +F+L+ ++ +V M +KG+ + D L S V GD +L+Q++ N
Sbjct: 923 LDIEEVQFDLSVVISDVNKMLSFAAERKGLKYI---DDIQQLSSWKVMGDPGRLRQVMTN 979
Query: 521 LVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHS 580
L++NS+KFTS+G +++R ++++
Sbjct: 980 LLTNSIKFTSDGSVTMRVKAQRETN----------------------------------- 1004
Query: 581 VERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHL 640
+ ++ F V+DTG GI ++ + +F+ F Q + G GLGL I +++V L
Sbjct: 1005 -----DTVEVHFTVEDTGIGIEEEVRQRLFKPFSQADSSTARRFGGTGLGLTISKNLVEL 1059
Query: 641 MKGEIAIADK 650
M+GEI + K
Sbjct: 1060 MRGEIFLESK 1069
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 952 DGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRK 1011
D SE+ + LVVED+ + ++ + KLG NG+EA +++ + +
Sbjct: 1153 DLDLSEEERRNTQVLVVEDNPVNQQIALKTIKKLGFPVRAVWNGQEALEYLSSPSPERPR 1212
Query: 1012 EGKALPYDYIMMDCEMPVMNGWEATRLIRKEE---EQYDVH-IPIIALTAHAMAGVASKI 1067
I+MD +MP+M+G+ AT IR ++ + DV PIIA+TA A+ G K
Sbjct: 1213 P------QVILMDVQMPIMDGYRATWTIRNDKAFVQNADVQSAPIIAMTASAIQGDREKC 1266
Query: 1068 VDAGMDFHLTKPLQKDKL 1085
AGMD +L KP++K L
Sbjct: 1267 QAAGMDDYLAKPVKKPML 1284
>gi|442611793|ref|ZP_21026496.1| hypothetical protein PALB_34970 [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
gi|441746538|emb|CCQ12558.1| hypothetical protein PALB_34970 [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
Length = 752
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 173/362 (47%), Gaps = 61/362 (16%)
Query: 324 AYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIIL----IAKAAKREMFLCAALIK 379
A S + +L + + + ++ +M + + G I++ +AK + + L +K
Sbjct: 173 AVQSGNIAALQDTSFVMHMFMISVMIAQQMFNFGFAIMVGEMRLAKNKETQHALLQLNVK 232
Query: 380 QMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN-LGLIRT 438
+ E+AE S K+ LA SH++R + +IG++ L ++ P D N + + +
Sbjct: 233 LAESKEKAEEASKLKSEFLANMSHEIRTPMNGVIGMLSLLEKE--PLKDHQTNFVNVAKG 290
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
++ LL ++N +++ SKIEA K+EL E EFNL L+ E++ + V+ +LD
Sbjct: 291 SAQSLLTLINDILDFSKIEADKLELEEVEFNLEALISEMISALSYKVETNQVEFILDT-- 348
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
S + V GD ++ +QI+ NLVSN++KFTS+G I V+ + + + ++R +S
Sbjct: 349 -SQVQHVFVVGDPIRFRQIVSNLVSNAIKFTSQGEILVKFSTQ--------LDADRVCVS 399
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
++ DTG GI + +Q+ +F F QV
Sbjct: 400 A---------------------------------QISDTGIGISELEQSRLFSSFSQVDA 426
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL--------TAVCE 670
+ G GLGL IV+ + LM G++ + + E G +G F F+V TA C+
Sbjct: 427 STTRQFGGTGLGLAIVKKLCELMHGQVGV-ESEKG-KGSRFFFDVYFDKSGAQHETACCK 484
Query: 671 RE 672
++
Sbjct: 485 QK 486
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 87/159 (54%), Gaps = 17/159 (10%)
Query: 935 ASISSHCSSLQQVAAQSDG----KCSEKPLNGK---KFLVVEDDAIVLKVTSAVLGKLGA 987
A I S C +Q+ A+ G E P N K L+VED+ + V S +L LG
Sbjct: 592 AQIQSLC---KQLEAKKTGLRKIDIEELPDNVKFNHHVLLVEDNKVNQLVASKLLDNLGL 648
Query: 988 KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYD 1047
K + NG+EA D V K+ + P ++MDC+MP M+G+EAT+ IR+ E
Sbjct: 649 KVTIANNGREAID-VLKV-----HYQETDPIALVLMDCQMPEMDGFEATQRIRQGEAGTR 702
Query: 1048 V-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+ IPI+ALTA+AM G ++AGM+ +L KP+Q D L
Sbjct: 703 LKRIPILALTANAMKGDEENCLNAGMNDYLAKPIQVDAL 741
>gi|428315504|ref|YP_007113386.1| ATP-binding region ATPase domain protein [Oscillatoria nigro-viridis
PCC 7112]
gi|428239184|gb|AFZ04970.1| ATP-binding region ATPase domain protein [Oscillatoria nigro-viridis
PCC 7112]
Length = 1976
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 144/309 (46%), Gaps = 51/309 (16%)
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
L K A+R L I A E A+ + K+ LA SH++R L I+G ++
Sbjct: 1485 LEVKVAERTQQLQEKNIDLQKAEELAKAANSAKSEFLANMSHELRTPLNGILGYTQILKR 1544
Query: 422 DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481
N + + L +I C + LL ++N ++++SKIEA KME+ F+L+Q LE + ++
Sbjct: 1545 QKNLADEQKDGLNVISQCGEHLLTLINDILDLSKIEARKMEIHLSNFHLSQFLEGLAEIC 1604
Query: 482 YHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541
+KG+ ++ +P + V+GD +L+Q+L NL+ N++KFT +G ++ +
Sbjct: 1605 NIRAEQKGISLIYEPITQLPIA---VQGDEKRLRQVLINLLGNAIKFTEKGGVAFKV--- 1658
Query: 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGI 601
G+ D + F+V+DTG G+
Sbjct: 1659 -----------------------------GYQD-------------GKIRFQVEDTGVGM 1676
Query: 602 PKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
++ IF F QV E L EG GLGL I + +V +M GEI + K +G F F
Sbjct: 1677 ALEQLQDIFLPFHQVGEANL-KVEGTGLGLAISRQLVQMMGGEIKV--KSTLGQGSIFWF 1733
Query: 662 NVLLTAVCE 670
++ L V E
Sbjct: 1734 DLDLPEVSE 1742
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K L+ +D + + +L LG + G++ + + D I+
Sbjct: 1763 RKILIADDKWQNRSIMTGMLQPLGFEILEATEGQDCLNKAVEFKPDC-----------IL 1811
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MD MPVM+G EATR IRK Q ++ +IA +A + + G + + KP++
Sbjct: 1812 MDLMMPVMSGLEATRRIRKSPGQ--TNLVVIATSASVFDFDRQQSAEVGCNDFIPKPIRI 1869
Query: 1083 DKLLDVVKS 1091
++ L+ +++
Sbjct: 1870 EEFLEKLRT 1878
>gi|47679006|dbj|BAD20690.1| probable two-component sensor [Pseudomonas sp. BS]
Length = 1211
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 136/272 (50%), Gaps = 45/272 (16%)
Query: 377 LIKQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL 435
LI+Q+ A A+ S KT LA SH++R + A+IG++EL + A+ ++ +
Sbjct: 687 LIEQLQEAKNLADDASRAKTSFLATMSHEIRTPMNAVIGILELALKRADSQPIDRASIEI 746
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
T + LL ++ ++++++IE+G++ L + NL +L+E V ++ + +K ++++LD
Sbjct: 747 AHTSANSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEGLARQKRLNLILD 806
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
D S+ +C V D ++ KQIL NLVSN++KFT EG + +
Sbjct: 807 -IDSSI--NCDVLVDALRFKQILSNLVSNAIKFTEEGSVKI------------------- 844
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
++ + N +LL V+DTG GI Q +F FVQ
Sbjct: 845 ---------------------SISGLAVNASLLNVNLSVEDTGVGISPSDQQRLFRPFVQ 883
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
+ + H EG GLGL I +S+ +M G + +
Sbjct: 884 AQRN-VQHTEGTGLGLVICRSLCEMMGGRVGL 914
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 65/129 (50%), Gaps = 12/129 (9%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+P + LVV+D I +V L LG ++G+ A L++ G+ P
Sbjct: 948 RPRQRLQVLVVDDHRINRQVLHEQLSFLGHDAIEAQDGQVA----------LQRWGEQ-P 996
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHL 1076
+D ++ DC MPVMNG E TR IR+ E+Q + II LTA A + AGM+ L
Sbjct: 997 FDVVITDCHMPVMNGAELTRAIRQIEQQRGLEATVIIGLTADAQPEELELCILAGMNECL 1056
Query: 1077 TKPLQKDKL 1085
KPL D+L
Sbjct: 1057 IKPLGLDEL 1065
>gi|410664806|ref|YP_006917177.1| MmoS protein [Simiduia agarivorans SA1 = DSM 21679]
gi|409027163|gb|AFU99447.1| MmoS protein [Simiduia agarivorans SA1 = DSM 21679]
Length = 798
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 146/320 (45%), Gaps = 59/320 (18%)
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKA------SHDVRASLAAIIGL 415
L+ +R+ A L ++ E +K++ +T AK+ SH++R + +IG+
Sbjct: 240 LLEDIEQRQAIETALLTEKQQKLESERQKAVAETANRAKSQFLATMSHEIRTPMNGVIGM 299
Query: 416 VELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLE 475
VEL + T L +I + L+ I+N +++ SKIEAGKMEL FNL L+E
Sbjct: 300 VELLRDTPLNATQ-QHYLDVIHRSGETLIDIINDILDYSKIEAGKMELESAPFNLEDLVE 358
Query: 476 EVVDMYYHVGIKKGVDVVLDPCDGSVLGSC--HVRGDRVKLKQILCNLVSNSMKFTSEGH 533
+ V ++ K+ ++++ GSV + ++ GD +L+Q+L NL+ N+ KFTSEG+
Sbjct: 359 DCVQLFGATANKRHIELI-----GSVSPTTPLNLMGDPTRLRQLLINLIGNAFKFTSEGY 413
Query: 534 ISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFE 593
+ V A R +E D P+ F
Sbjct: 414 VIVEA----------------------------RREENSD-----------PDQPTIRFS 434
Query: 594 VDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
+ D+G GI + +F+ F Q + G GLGL I + + +M GEI + E
Sbjct: 435 IRDSGIGINDEGMARLFQSFSQADSSTTRKFGGTGLGLAICKRLAEMMGGEIGVVSTEG- 493
Query: 654 ERGVCFRFNVLLTAVCERER 673
+G F F TA +RE+
Sbjct: 494 -KGSTFWF----TARFQREQ 508
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 72/125 (57%), Gaps = 14/125 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K LV ED+ + V +LGK G + E+ NGK AF+ V +D +D ++M
Sbjct: 667 KVLVAEDNNVNRMVIKGMLGKFGIEPEMVENGKLAFEAVTAPDAD---------FDLVLM 717
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIP---IIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
DCEMP M+G+EATR IR+ E + +P I+ALTAHAM + AGM+ +++KP+
Sbjct: 718 DCEMPEMDGFEATRCIREYERRN--MLPDTLIVALTAHAMQEHREAVYQAGMNHYMSKPV 775
Query: 1081 QKDKL 1085
D L
Sbjct: 776 TVDAL 780
>gi|336429690|ref|ZP_08609651.1| hypothetical protein HMPREF0994_05657 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336002161|gb|EGN32281.1| hypothetical protein HMPREF0994_05657 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 854
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 146/304 (48%), Gaps = 52/304 (17%)
Query: 354 ISLGLFIILIAKAAKREMFLCAALIKQMN------ATEQAERKSMNKTFALAKASHDVRA 407
+S+G+FIIL + + FL + ++ N E+AE + K+ L++ SH++R
Sbjct: 301 VSVGIFIILFSTVSA--FFLLLSHREKRNRELLLMEKERAESANRAKSNFLSQMSHEIRT 358
Query: 408 SLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEE 467
L I+G+VEL + L I S LL ++N +++MSKIE+GK+EL E+
Sbjct: 359 PLNGIMGMVELGKNHLAEPERMRNCLDKITLSSTHLLSLINDILDMSKIESGKIELHPEQ 418
Query: 468 FNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMK 527
F+L +LL + +++ I K +D + G V ++ GD ++L QIL NL+SN++K
Sbjct: 419 FDLGRLLRALTTVFHVQAISKQIDFQV-FLHGEV--EEYLVGDALRLNQILTNLLSNAVK 475
Query: 528 FT-SEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPN 586
FT ++G +S+ + + R+
Sbjct: 476 FTPAQGRVSLN----------------------------------------VEELRRDEY 495
Query: 587 LLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIA 646
+ F V DTG+GI + +S+FE F Q + G GLGL I ++ LM G I+
Sbjct: 496 WIWLRFSVRDTGRGIAPENIDSVFEAFTQENSGIVRQYGGTGLGLPITKNFAELMGGSIS 555
Query: 647 IADK 650
++ +
Sbjct: 556 VSSE 559
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 19/189 (10%)
Query: 919 DPNPLNKLKSF-GAEAGASISSHCSSLQQVAAQSDGKCSEKP-------LNGKKFLVVED 970
D + LN S GA+A S + ++ A+ G+ S +P L G + +VVED
Sbjct: 674 DQDELNDTASLCGADATLCRPVFHSDIAELMAELTGQKSVQPEQETSTVLAGAQVMVVED 733
Query: 971 DAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM 1030
+ I L++ A+L GA NG+EA ++ K Y I+MD +MPVM
Sbjct: 734 NDINLEIAVALLQDAGAFVTTASNGQEA-------VAQFSGAPKGF-YHLILMDVQMPVM 785
Query: 1031 NGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
+G A + IR Q IIA+TA++ K +D+GM+ H+ KP + D+++
Sbjct: 786 DGCSAAQAIRALPRQDAKSTVIIAMTANSFNEDVQKCLDSGMNAHIGKPFVMN---DIIE 842
Query: 1091 SIDETMEKQ 1099
+ + ++KQ
Sbjct: 843 TYTKVLQKQ 851
>gi|452836540|gb|EME38484.1| hypothetical protein DOTSEDRAFT_75869 [Dothistroma septosporum NZE10]
Length = 1427
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 154/308 (50%), Gaps = 59/308 (19%)
Query: 349 FIAGVISLGLFIILI----AKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHD 404
+I GV+ + + I + A+ AKR A L+ Q A ++A + M F LA SH+
Sbjct: 757 YIDGVVGVSMDITELREAAAQVAKRNQ-ENARLMAQSVAAKEASK--MKSQF-LANMSHE 812
Query: 405 VRASLAAIIGLVELCHED-----ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAG 459
+R +A +IG+ EL +D + AEN I+ + LL ++N +++ SK+E+G
Sbjct: 813 IRTPIAGVIGMSELLLDDDSGELTKEQRECAEN---IQRSANGLLTVINDILDFSKVESG 869
Query: 460 KMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILC 519
++++ E +F+L+ ++ +V M +KG+ + D L S V GD +L+Q++
Sbjct: 870 RLDIEEVQFDLSVVIRDVNKMLSFAAERKGLKYI---DDIQQLQSWKVMGDPGRLRQVMT 926
Query: 520 NLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALH 579
NL++NS+KFTSEG ++++ +K++
Sbjct: 927 NLLTNSIKFTSEGSVAMKVKAQKETH---------------------------------- 952
Query: 580 SVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVH 639
++++ F V+DTG GI ++ + +F+ F Q + G GLGL I +++V
Sbjct: 953 ------DMVEVHFTVEDTGIGIEEEVRKRLFKPFSQADSSTARRFGGTGLGLTISKNLVE 1006
Query: 640 LMKGEIAI 647
LM G+I++
Sbjct: 1007 LMHGQISL 1014
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 70/126 (55%), Gaps = 14/126 (11%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LVVED+AI ++ + KLG NGKEA D+ LS KE + P D I+MD
Sbjct: 1115 LVVEDNAINQQIALKTIRKLGFPVRAVWNGKEALDY----LSAPSKE-QPRP-DIILMDV 1168
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVH------IPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
+MP+M+G++AT IR Q H PI+A+TA A+ G K AGMD +L KP
Sbjct: 1169 QMPIMDGYKATYTIRNA--QPFAHNPEMQGTPIVAMTASAIQGDREKCQAAGMDDYLAKP 1226
Query: 1080 LQKDKL 1085
++K L
Sbjct: 1227 VKKPNL 1232
>gi|77362202|ref|YP_341776.1| two-component hybrid sensor and regulator [Pseudoalteromonas
haloplanktis TAC125]
gi|76877113|emb|CAI89330.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
haloplanktis TAC125]
Length = 1585
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 122/261 (46%), Gaps = 45/261 (17%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
A+ + K+ LA SH++R + ++G++EL + P + + + +T + LLG+
Sbjct: 1062 AKEAGVAKSQFLATMSHEIRTPMNGVLGMLELIQLEQLP-KPIETKVAIAKTSAHSLLGV 1120
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH 506
+N +++ SK EAGK+EL FN L+ EV KG++++LD L
Sbjct: 1121 INDILDFSKAEAGKIELESINFNARDLIGEVAAAQALTAQNKGIEIILDLV---ALEPSQ 1177
Query: 507 VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFF 566
+ GD +++Q+L NL+SN++KFT+EG + V A
Sbjct: 1178 LSGDPGRIRQVLTNLLSNAVKFTNEGEVVVSA---------------------------- 1209
Query: 567 RNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEG 626
S+ER L + V D+G GI K+KQ +F F+QV + G
Sbjct: 1210 -------------SIERIEAQLMLQVSVKDSGIGISKEKQQQLFAPFMQVDASTTREYGG 1256
Query: 627 LGLGLGIVQSMVHLMKGEIAI 647
GLGL I + + LM G I I
Sbjct: 1257 TGLGLAISKQLCELMGGAITI 1277
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 11/132 (8%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
K + K L+VED+ I +V++ +L KL + + NG+ A + + K +A
Sbjct: 1457 KTIEPAKILLVEDNPINQQVSTLMLKKLNCETVLAENGQRALEELAK--------HEAGY 1508
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEE--EQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075
+ ++MDC+MPVM+G++AT IRK E EQ+ I IIALTA+AM + + GM+ +
Sbjct: 1509 FQVVLMDCQMPVMDGYDATIAIRKGEAGEQHKA-IKIIALTANAMDSDKERCIAVGMNDY 1567
Query: 1076 LTKPLQKDKLLD 1087
L+KP++ D L D
Sbjct: 1568 LSKPIELDILKD 1579
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 7/133 (5%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
+NG LVV+D+ V S L GA E+ N +H I + K + + YD
Sbjct: 1308 INGLSILVVDDNETNRLVISEQLKHWGANVELANNA----EHALLICENRVKNNQGM-YD 1362
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++D +MP M+G E +++ + H+P++ +T+ A A + DAG + KP
Sbjct: 1363 IAVLDMQMPGMDGIELCEVLKAHADYK--HMPLVMMTSIAGLEGAQRYSDAGFQAYFPKP 1420
Query: 1080 LQKDKLLDVVKSI 1092
+ L+ + I
Sbjct: 1421 VTTADLISALSVI 1433
>gi|374294152|ref|YP_005041177.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
gi|357428150|emb|CBS91102.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
Length = 1314
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 141/286 (49%), Gaps = 54/286 (18%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA----ENLGLIR 437
A E+A+R + K+ LA SH++R + A+IGL L + TDL + L I
Sbjct: 534 RAKEEADRANRQKSDFLANMSHEIRTPMNAVIGLSHLMMK-----TDLTPRQRDYLDKIH 588
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
S+ LLGI+N +++ SK+EAGK+ + F++ +L+EV + +KG+++++D
Sbjct: 589 ASSRSLLGIINDILDFSKVEAGKLTIEAIPFHVGDVLQEVATVVLPKLREKGLELIVD-L 647
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+G V G+ + GD ++L Q++ NLVSN++KFT G + V + +
Sbjct: 648 NGDVPGT--LVGDPLRLGQVILNLVSNAVKFTERGEVVVTVGGRIGT------------- 692
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
DD + E EV DTG G+ ++ ++F F Q
Sbjct: 693 --------------ADD-------------YRLEVEVCDTGIGMSPEQTAALFRPFTQAD 725
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ G GLGL I + +V LM G +++ + PGE G FRF++
Sbjct: 726 TSTTRRFGGTGLGLAICRQLVELMGGAVSV-ESRPGE-GSIFRFSI 769
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 78/126 (61%), Gaps = 13/126 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G+ L+VED+ + +V +L +G + V +G+EA C LR+ + +D
Sbjct: 947 LVGRTVLLVEDNLVNQQVACGLLELVGIEAMVVGSGEEALQ--C-----LRE----VKFD 995
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MP ++G+E TRLIR++ E +PI+A+TAHAMAG + +DAGM+ H++KP
Sbjct: 996 LVLMDVQMPGLDGYETTRLIRRDLELS--SLPIVAMTAHAMAGDRERCLDAGMNDHVSKP 1053
Query: 1080 LQKDKL 1085
+ + L
Sbjct: 1054 IDPEAL 1059
>gi|354552524|ref|ZP_08971832.1| multi-sensor hybrid histidine kinase [Cyanothece sp. ATCC 51472]
gi|353555846|gb|EHC25234.1| multi-sensor hybrid histidine kinase [Cyanothece sp. ATCC 51472]
Length = 842
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 132/281 (46%), Gaps = 59/281 (20%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
AE+ + K+ LA SH++R L AI+G V+L + +D NL I + LLG+
Sbjct: 378 AEKANHAKSEFLASMSHELRTPLNAILGYVQLMLRSTSLSSDHRNNLQTINDSGEHLLGL 437
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC- 505
+N V+EMSKIEAG++ L E +F+L LL+E+ + K + + S + C
Sbjct: 438 INDVLEMSKIEAGQIVLKETDFDLYHLLDELETLLQLKATIKQLSL-------SFIRDCT 490
Query: 506 ---HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++R D KL+Q+L N++ N++KFT +G ++V+ +
Sbjct: 491 VPQYIRTDEKKLRQVLINIIGNAIKFTEKGRVTVKVWCEGH------------------- 531
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+LF F V+DTG+GI K++ +F FVQ K +
Sbjct: 532 RLF--------------------------FAVEDTGQGIEKEELEQLFSPFVQAK-AGVN 564
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
EG GLGL I ++LM G+I + G F FN+
Sbjct: 565 SGEGTGLGLPISSKFINLMGGKIMV--NSVVTEGTTFTFNI 603
Score = 48.9 bits (115), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED + +L +G + NG+EA L D A I M
Sbjct: 634 RILVVEDKQTNRDLLVKLLTLVGFDVKEATNGREAIA-----LWD------AWEPHLIWM 682
Query: 1024 DCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D +MP+MNG+EAT+ I+ + Q V IIALTA +++D G D KP +
Sbjct: 683 DMQMPIMNGYEATKRIKASLKGQATV---IIALTASVFEEQRQEVLDCGCDDFAAKPFRS 739
Query: 1083 DKLLD 1087
++ D
Sbjct: 740 QEIFD 744
>gi|168044281|ref|XP_001774610.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674030|gb|EDQ60544.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 308
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 137/270 (50%), Gaps = 36/270 (13%)
Query: 402 SHDVRASLAAIIGLVELCHEDANPGTDLAENLGL--------IRTCSKDLLGILNSVMEM 453
SH++R +A IIGL+++ L ENL + I C+ L+ +LNS +++
Sbjct: 3 SHELRTPMACIIGLLDML---------LMENLTVEHEGSIRQIHRCATSLVSLLNSALDI 53
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
+K+E+GK+ L + EFNL L ++D++ K + + LD D V GD +
Sbjct: 54 AKVESGKLVLEKAEFNLEAELTALIDVFSVQCDNKNLFISLDVADDV---PKRVIGDSAR 110
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
+ Q+ NLV NS+KFTS+G I VR + N + KL R+ F
Sbjct: 111 VMQVFTNLVGNSLKFTSKGRIMVRVRIA-------------NPEADVSGKLHQRSFSPFS 157
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
L+ + P+L+ FEVDDTG GI + IFE FVQ + G GLGLGI
Sbjct: 158 -LERFNEASNAPDLVVLVFEVDDTGPGIEPALREKIFENFVQGNASTTRTHGGTGLGLGI 216
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
V+S+V LM G I I +K GV F+F++
Sbjct: 217 VRSLVQLMGGSIRIVEK--SGPGVVFQFSI 244
>gi|417322821|ref|ZP_12109355.1| sensor protein LuxQ [Vibrio parahaemolyticus 10329]
gi|328470975|gb|EGF41886.1| sensor protein LuxQ [Vibrio parahaemolyticus 10329]
Length = 858
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 159/324 (49%), Gaps = 58/324 (17%)
Query: 350 IAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASL 409
I+G+I G I + +A K+ A +AE+ + + LAK SH++R +
Sbjct: 448 ISGIIVQGQDITTLIEAEKQSNL----------ARREAEKSAQARADFLAKMSHEIRTPI 497
Query: 410 AAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFN 469
I+G+ +L +D+ + + ++R + LL +LN +++ SKIE GK + + F+
Sbjct: 498 NGILGVAQLL-KDSVEAEEQKNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFS 556
Query: 470 LAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT 529
A + + ++Y + KGV++V+ + + G+ + D+V+L QIL NLVSN++KFT
Sbjct: 557 FADTMRTLENIYRPICENKGVELVI---ENQLDGNVEIFTDQVRLNQILFNLVSNAVKFT 613
Query: 530 SEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQ 589
G + + A +++ F+ G D N L+
Sbjct: 614 PSGCVRLHAELEQ----------------------FY----GAD----------NSVLV- 636
Query: 590 FEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIAD 649
E+ DTG GI DK + +FE FVQ + T G GLGL IV+++V ++ G++ +
Sbjct: 637 --VEISDTGIGIESDKLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRS 694
Query: 650 KEPGERGVCFRFNVLLTAVCERER 673
++ +G F V+ V +RER
Sbjct: 695 QKG--QGTTF---VVTLPVKDRER 713
Score = 47.0 bits (110), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+VED+ + A K + + ++G EA + + K YD I+M
Sbjct: 735 KVLLVEDNHTNAFILKAFCTKYKMQVDWTKDGLEAMEFL-----------KDHSYDLILM 783
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D ++P + G E T+ IR + + PI A TA + ++AG ++ L KP++++
Sbjct: 784 DNQLPHLGGIETTKEIR---QNLKLGTPIYACTADTAQETSDAFMEAGANYVLLKPIKEN 840
Query: 1084 KL 1085
L
Sbjct: 841 AL 842
>gi|308070734|ref|YP_003872339.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
gi|305860013|gb|ADM71801.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
Length = 556
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 50/277 (18%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA SH++R + +IG+++L E +D E +IR + L+ ++N +++ +K+E
Sbjct: 173 LAMMSHEIRTPMNGVIGMIDLLME-TELQSDQQEYADIIRRSADALVAVINDILDFTKLE 231
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGSCHVRGDRVKLK 515
+GKME+ E F+L ++EV ++ +K +++V LD VL GD +L+
Sbjct: 232 SGKMEVEEYPFDLVSCIKEVFSLFTVEVNRKNLELVYFLDEQMPPVL-----YGDMGRLR 286
Query: 516 QILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDL 575
Q+L NLVSN++KFT +G + V A+VK
Sbjct: 287 QVLINLVSNAVKFTDQGGVYVFASVK---------------------------------- 312
Query: 576 DALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQ 635
E++ N L EF V DTG GI K +F+ F Q+ + G GLGL I +
Sbjct: 313 ------EQSDNGLTVEFSVKDTGIGIDSAKVERLFQPFSQLDSSMTRKYGGTGLGLAICK 366
Query: 636 SMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
++V++M G+I + GE+GV F F + L E E
Sbjct: 367 TLVNMMGGDIRV--DMSGEQGVTFHFTMKLGFAEENE 401
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 11/119 (9%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+ LVV+D I K+ +L KLG +V +G++A D V YDYI
Sbjct: 421 RPVLVVDDHPINQKLMVNILDKLGLASDVAADGQQALDMVMA----------NQDYDYIF 470
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD +MPVM+G E T +R E+ IIA+TA+ M G+ + ++AGM+ +++KP++
Sbjct: 471 MDLQMPVMDGLECTGRVR-EQLAGRSQPAIIAMTANVMEGIQPRCIEAGMNDYISKPVK 528
>gi|28901075|ref|NP_800730.1| sensor protein LuxQ [Vibrio parahaemolyticus RIMD 2210633]
gi|260364054|ref|ZP_05776777.1| LuxQ, periplasmic family [Vibrio parahaemolyticus K5030]
gi|260879926|ref|ZP_05892281.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
parahaemolyticus AN-5034]
gi|260894602|ref|ZP_05903098.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
parahaemolyticus Peru-466]
gi|50401015|sp|Q87GU5.1|LUXQ_VIBPA RecName: Full=Autoinducer 2 sensor kinase/phosphatase LuxQ
gi|28809588|dbj|BAC62563.1| sensor protein LuxQ [Vibrio parahaemolyticus RIMD 2210633]
gi|308086409|gb|EFO36104.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
parahaemolyticus Peru-466]
gi|308092294|gb|EFO41989.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
parahaemolyticus AN-5034]
gi|308114073|gb|EFO51613.1| LuxQ, periplasmic family [Vibrio parahaemolyticus K5030]
Length = 858
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 159/324 (49%), Gaps = 58/324 (17%)
Query: 350 IAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASL 409
I+G+I G I + +A K+ A +AE+ + + LAK SH++R +
Sbjct: 448 ISGIIVQGQDITTLIEAEKQSNL----------ARREAEKSAQARADFLAKMSHEIRTPI 497
Query: 410 AAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFN 469
I+G+ +L +D+ + + ++R + LL +LN +++ SKIE GK + + F+
Sbjct: 498 NGILGVAQLL-KDSVEAEEQKNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFS 556
Query: 470 LAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT 529
A + + ++Y + KGV++V+ + + G+ + D+V+L QIL NLVSN++KFT
Sbjct: 557 FADTMRTLENIYRPICENKGVELVI---ENQLDGNVEIFTDQVRLNQILFNLVSNAVKFT 613
Query: 530 SEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQ 589
G + + A +++ F+ G D N L+
Sbjct: 614 PSGCVRLHAELEQ----------------------FY----GAD----------NSVLV- 636
Query: 590 FEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIAD 649
E+ DTG GI DK + +FE FVQ + T G GLGL IV+++V ++ G++ +
Sbjct: 637 --VEISDTGIGIESDKLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRS 694
Query: 650 KEPGERGVCFRFNVLLTAVCERER 673
++ +G F V+ V +RER
Sbjct: 695 QKG--QGTTF---VVTLPVKDRER 713
Score = 47.0 bits (110), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+VED+ + A K + + ++G EA + + K YD I+M
Sbjct: 735 KVLLVEDNHTNAFILKAFCTKYKMQVDWAKDGLEAMEFL-----------KDHSYDLILM 783
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D ++P + G E T+ IR + + PI A TA + ++AG ++ L KP++++
Sbjct: 784 DNQLPHLGGIETTKEIR---QNLKLGTPIYACTADTAQETSDAFMEAGANYVLLKPIKEN 840
Query: 1084 KL 1085
L
Sbjct: 841 AL 842
>gi|258627627|ref|ZP_05722403.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603]
gi|258580070|gb|EEW05043.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603]
Length = 1586
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 133/272 (48%), Gaps = 44/272 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTD--LAENLGLIRTC 439
A AE+ + K+ LA SH++R L AI+GL L +++ + L + +G+
Sbjct: 830 QALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESLTESQHRLVDKIGI---S 886
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
K LLGI+N V+++SKIEA +M L +L + LEEV ++ K +D L+
Sbjct: 887 GKSLLGIVNDVLDLSKIEANEMILEALPLDLREFLEEVASVFSTQAEAKNLDFKLEI--- 943
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
V V D ++L+QIL NL+SN++KFTS GHI++RA + K + + +N++
Sbjct: 944 GVDLPHWVIADSMRLRQILTNLLSNALKFTSVGHIALRAEIIDKFIWK---GAEKNIV-- 998
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
F + DTG GI ++ Q +F+ F Q +
Sbjct: 999 -------------------------------RFSITDTGIGISEEAQKRLFKPFSQADTS 1027
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651
G GLGL IV ++ LM+G+I + +E
Sbjct: 1028 TSRRFGGTGLGLSIVHKLLGLMEGKIGVESRE 1059
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 16/172 (9%)
Query: 922 PLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKC-SEKPLNGKKFLVVEDDAIVLKVTSA 980
P+N F A +++S H + +V + + K L G + LVV+D A L+V
Sbjct: 1199 PINASAVFNA-VNSAVSQHSGNANRVLQSTRTEAIKAKWLLGFRVLVVDDSATNLEVADY 1257
Query: 981 VLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040
VL + GA V +G+EA ++ L+++ + YD ++MD +MP M+G E TR IR
Sbjct: 1258 VLTQAGATTNVVASGEEA-------INKLKQQNE---YDAVLMDVQMPGMDGLETTRYIR 1307
Query: 1041 KEEEQYDVH-IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKS 1091
+H +PIIALTA A+ + +GM+ LTKP+ +L+ V+++
Sbjct: 1308 N---TLKLHALPIIALTAGALVEERKRAFASGMNDFLTKPISPSRLISVLRT 1356
>gi|451853371|gb|EMD66665.1| hypothetical protein COCSADRAFT_84482 [Cochliobolus sativus ND90Pr]
Length = 2367
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 155/333 (46%), Gaps = 68/333 (20%)
Query: 375 AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLG 434
A I+ M E+A + K+ LA SH++R L +IG+ EL A+P E G
Sbjct: 1869 ANAIRNMKLKEEAAKA---KSLFLANVSHELRTPLNGVIGMSELL--KASPLN--GEQSG 1921
Query: 435 L---IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD 491
IR C+ LL I+N +++ SK+EAGKM ++E +L + + EVV + ++G+
Sbjct: 1922 YADSIRVCADTLLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLK 1981
Query: 492 VV----LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFK- 546
+ LDP V GD V+L QIL NL+SNS KFT G ++VRA V +++ +
Sbjct: 1982 TIEQLELDP-------EMLVMGDPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDQETSEW 2034
Query: 547 QDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQ 606
D+ S V DTG GIP +++
Sbjct: 2035 ADVTCS-----------------------------------------VIDTGIGIPDEQK 2053
Query: 607 NSIFEEFVQVKETALGHQEGLGLGLGIVQSMV-HLMKGEIAIADKEPGE-RGVCF--RFN 662
+F F Q++ ++ G GLGL I ++++ ++M G + + D +PG+ V F RF
Sbjct: 2054 QKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRL-DSQPGKGTTVTFSLRFK 2112
Query: 663 VLLTAVCERERPDTDEEDPRTHNDWPQTGLHQH 695
+ A ++ + E DP + H+H
Sbjct: 2113 KVPKARVADQQQRSREPDPMARFSSQENNGHEH 2145
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 115/254 (45%), Gaps = 22/254 (8%)
Query: 842 VPSLSCKVVWIDNSVIRNAHSREYRL----LPICDHVISRPFHGSRLIEVLKLLPECKGA 897
+P + +++ S I ++ +R Y L IC +I HG+ ++
Sbjct: 2048 IPDEQKQKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGKGTTVTF 2107
Query: 898 SQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSE 957
S R F K+ + + Q +P+P+ + S S C L V
Sbjct: 2108 SLR-FKKVPKARVADQQQRSREPDPMARFSSQENNGHEHTSGACIDLSAV---------- 2156
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
P + + ED+ I ++ + + KLG K + +G + D + + + R P
Sbjct: 2157 -PRRDLRVCIAEDNLINQRIAISFVQKLGFKCDAYLDGFKTIDALERASENGR------P 2209
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
+ ++MD +MP +G+EAT+LIRK ++ IIA+TA A+ G K +++GM+ +L
Sbjct: 2210 FHLVLMDVQMPHCDGYEATKLIRKHPNPEIRNVLIIAMTASAIQGDREKCIESGMNNYLA 2269
Query: 1078 KPLQKDKLLDVVKS 1091
KP++ L +++S
Sbjct: 2270 KPVRAQTLKALLES 2283
>gi|428225220|ref|YP_007109317.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427985121|gb|AFY66265.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 2144
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 144/313 (46%), Gaps = 53/313 (16%)
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
L+ +A ++ L A A +A+ + +K+ LA SH++R + A+IG+ L
Sbjct: 1455 LLEQAVEQREELVAKNAALETAKREADAANRSKSDFLAMMSHEIRTPMNAVIGMASLLF- 1513
Query: 422 DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481
D + + IR+ + LL ++N +++ SKIE+GK+ L E+ FNL + +E+ +D+
Sbjct: 1514 DTELSPQQMDFVETIRSSGEVLLTLINDILDFSKIESGKLHLEEQRFNLRRCVEDALDLI 1573
Query: 482 YHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541
KKG++++ G+ L H +GD +L+Q+L NL+SN++KFT G + V
Sbjct: 1574 ATQATKKGLELICWIASGTPL---HFQGDVTRLRQVLVNLLSNAIKFTQAGEVMV----- 1625
Query: 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNP----NLLQFEFEVDDT 597
SVE P + F V DT
Sbjct: 1626 --------------------------------------SVESQPCSNGGCYKLHFAVHDT 1647
Query: 598 GKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGV 657
G GI D+ +F+ F QV + G GLGL I + + +M G + + + E G G
Sbjct: 1648 GIGIHPDQLRHLFQPFSQVDSSMTRRYGGTGLGLSISKRLCEMMGGRVWV-ESEVGV-GS 1705
Query: 658 CFRFNVLLTAVCE 670
F F V L ++ E
Sbjct: 1706 TFHFTVRLQSISE 1718
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 84/141 (59%), Gaps = 15/141 (10%)
Query: 951 SDGKCSEK-PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDL 1009
S + SE+ PL+ L+VED + K+ +L +LG + +V NG EA ++ L
Sbjct: 1869 SGDRLSEQYPLH---ILLVEDVPVNQKLVLQMLQRLGYRADVANNGHEA-------IAAL 1918
Query: 1010 RKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVD 1069
R++ PYD ++MD +MP M+G EATR IR+++ IIA+TAHAM G +D
Sbjct: 1919 RRQ----PYDVVLMDVQMPEMDGLEATRWIRRQDPTLLKDPYIIAMTAHAMQGDRELCLD 1974
Query: 1070 AGMDFHLTKPLQKDKLLDVVK 1090
AGM+ +L+KP++ + L+ ++
Sbjct: 1975 AGMNDYLSKPIRLEGLVKALR 1995
Score = 46.2 bits (108), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
+ GK+ LV +D+ + + + + + + +G EA H+ ++ YD
Sbjct: 1732 MKGKRVLVADDNQTTRETIARQIQEWEMQVQTAASGAEAIAHLHQLSQ----------YD 1781
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
+++D +MP NG++ IR+ +PI+ ++ + I D G+ L KP
Sbjct: 1782 LVILDHQMPSGNGFDIAAQIRQLPGGQG--LPIVVMSTGIESPSPEAIADIGVTALLAKP 1839
Query: 1080 LQKDKLLDVVKSI 1092
L++ + DV+ I
Sbjct: 1840 LKQSQFYDVLAQI 1852
>gi|158521107|ref|YP_001528977.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
gi|158509933|gb|ABW66900.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
Length = 1721
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 144/297 (48%), Gaps = 32/297 (10%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTD--LAENLGLIRTC 439
AT++A + K+ LA SH++R + I+G+ L E G AE ++R
Sbjct: 1269 QATQRARAATQAKSEFLANMSHEIRTPMNGILGMTSLLLETELTGEQRRFAE---IVRNN 1325
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
LL I+N +++ SKIEAGK+EL +F+L +LLE + KKG++++ D G
Sbjct: 1326 GDALLEIINDILDFSKIEAGKLELEMVDFSLNKLLEGLAGALSVQAHKKGIELIYDIEPG 1385
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
+ HVRGD +L+QIL NL+ N++KFT +G + V+ I + V +
Sbjct: 1386 T---PSHVRGDPGRLRQILANLMGNAIKFTEKGEVFVQ------------IKTGEAVAAD 1430
Query: 560 CLSKLFFRNKEGFDDLD------ALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
+++ + G D+ A+ + + + F V DTG GI +K +IFE F
Sbjct: 1431 TVAE----TEAGAPDVKSTEPEVAVSVSDNDAPAVTLLFSVKDTGIGISPEKIETIFESF 1486
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
Q + + G GLGL I + + ++ G++ + PG G F F A E
Sbjct: 1487 TQADSSITRNFGGTGLGLTISRKLAGMLGGKLWVTSN-PGA-GSTFAFTARFEAPEE 1541
>gi|395007235|ref|ZP_10391000.1| PAS domain S-box [Acidovorax sp. CF316]
gi|394314783|gb|EJE51647.1| PAS domain S-box [Acidovorax sp. CF316]
Length = 1622
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 128/266 (48%), Gaps = 44/266 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A E AE + K+ LA SH++R + AIIG+ L + + T + + I+ +
Sbjct: 863 RAKELAEESTALKSNFLANMSHEIRTPMNAIIGMSHLALK-SGLNTRQHDYVSKIQQAGQ 921
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LLG++N +++ SKIEAGK+ + ++ F L ++LE V D+ + KG+++V CD +
Sbjct: 922 HLLGVINDILDFSKIEAGKLTVEKQPFVLDRMLESVTDVVGYKAGAKGLELV---CDVAA 978
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
++ GD ++L QIL N +N++KFT +G IS+
Sbjct: 979 NVPPNLLGDSLRLGQILINFANNAIKFTDQGEISI------------------------- 1013
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
A+ +E + + FEV DTG G+ ++ +FE F Q +
Sbjct: 1014 ---------------AVRLLEESEKRVSLRFEVRDTGIGLTAEQMGRLFESFQQADTSTT 1058
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAI 647
G GLGL I +S+ LM GE+ +
Sbjct: 1059 RRYGGTGLGLAICKSLAELMGGEVGV 1084
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 15/133 (11%)
Query: 955 CSEKPL--NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKE 1012
E PL G + L+VED+ + V +L G +V NG+ A + ++ D
Sbjct: 1257 ADELPLAIRGARVLLVEDNELNQMVAVELLRDAGFDVDVAGNGQVA---IQRLHED---- 1309
Query: 1013 GKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGM 1072
YD ++MD +MPVM+G ATR +R + +PI+A+TA+AM + DAGM
Sbjct: 1310 ----NYDLVLMDMQMPVMDGETATRHLRADPRF--ARLPIVAMTANAMDADRQRCFDAGM 1363
Query: 1073 DFHLTKPLQKDKL 1085
+ H+ KP+ L
Sbjct: 1364 NDHVAKPIDPAAL 1376
>gi|117926678|ref|YP_867295.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117610434|gb|ABK45889.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 957
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 136/274 (49%), Gaps = 57/274 (20%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRTCSKDLLGILNS 449
K+ LA SH++R + +IG+ EL E T L+E + +R+ LL ++N+
Sbjct: 586 KSEFLAAMSHEIRTPMNTVIGMTELLLE-----TPLSEEQQRYVRSLRSSGTALLDVINA 640
Query: 450 VMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRG 509
++++++IE+G++EL EE ++L +L+ E ++ + KK +++VL+ + ++ G
Sbjct: 641 ILDLTRIESGRLELTEERYDLHELMRETCEVMGYAAAKKKLEMVLEMNPNT---PNYLVG 697
Query: 510 DRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNK 569
D +L+QIL NLV N++KFT G + VR + +
Sbjct: 698 DAPRLRQILINLVGNAIKFTEVGQVCVRVWLDE--------------------------- 730
Query: 570 EGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629
+VER EV+D+G GIPK+ N+IF+ F Q + G GL
Sbjct: 731 ----------AVER------LRIEVEDSGIGIPKEHINTIFDMFAQADSSMARRFGGSGL 774
Query: 630 GLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
GL I Q + LM G +A+ + ++G CF ++
Sbjct: 775 GLTISQRLAQLMGGRLAVQSQV--QKGSCFTLSM 806
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 11/127 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED + A L + + NG+EA +V K G+ P D I+M
Sbjct: 831 RILLAEDSVDNQNLIQAYLSRTSHELIYAINGEEAERYV--------KSGQ--PVDLILM 880
Query: 1024 DCEMPVMNGWEATRLIRK-EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D +MP+++G+ ATR IR E++Q +PI+ALTAHA+ + ++AG D HLTKP+ K
Sbjct: 881 DIQMPLVDGYTATRRIRAWEQQQGRPAVPIVALTAHALKEDEMRSLEAGCDAHLTKPIGK 940
Query: 1083 DKLLDVV 1089
+LL V+
Sbjct: 941 KQLLQVL 947
>gi|428771931|ref|YP_007163719.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
gi|428686210|gb|AFZ46070.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
Length = 894
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 139/299 (46%), Gaps = 64/299 (21%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVEL-CHEDANPGTDLAENLGLIRTCSK 441
A ++AE + K+ LA SH++R + I+G+ +L CH N E ++T ++
Sbjct: 500 ARKEAESANRAKSAFLATMSHEIRTPMNGIMGMADLLCHTPLNK-----EQKDYVKTINQ 554
Query: 442 D---LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV----- 493
LL I+N +++++KIEAGK+EL ++ FNL Q +EEV+ + I K + ++
Sbjct: 555 SGSLLLTIINDILDLAKIEAGKIELEKKPFNLHQCIEEVLKLMRANAINKNIKLIYIKNH 614
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
L P D GD +LKQI+ NLVSN +KFT +G + V+A +
Sbjct: 615 LIPAD--------FIGDINRLKQIILNLVSNGIKFTEKGEVQVKADAR------------ 654
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
C D H + + + DTG GIP DK + +F+ F
Sbjct: 655 -----LC--------------PDGFHVI---------QIAIKDTGIGIPTDKCDRLFKPF 686
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
QV T G GLGL I Q + HLM G+I K +G F + L A+ E
Sbjct: 687 SQVDGTNTRKYGGTGLGLVISQKIAHLMGGKITF--KTEIAQGSTFYITIKLLALSSEE 743
Score = 47.0 bits (110), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 20/132 (15%)
Query: 954 KCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLG---AKFEVCRNGKEAFDHVCKILSDLR 1010
K S P+ K L+VED+ + KV + KLG K + +G +A + + +
Sbjct: 762 KISSLPI---KILLVEDNPVNYKVARLMFQKLGYTGEKLNIAHDGLQALELINQN----- 813
Query: 1011 KEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVD 1069
YD + MD +MP ++G T IR ++ + P I+A+TA A+A +
Sbjct: 814 ------QYDIVFMDLQMPNLDGLNTTIKIRALGKK--IKQPWIVAMTASALAEDRKNCFN 865
Query: 1070 AGMDFHLTKPLQ 1081
GM+ +++KP++
Sbjct: 866 VGMNDYVSKPIR 877
>gi|345889627|ref|ZP_08840624.1| hypothetical protein HMPREF0178_03398 [Bilophila sp. 4_1_30]
gi|345039416|gb|EGW43747.1| hypothetical protein HMPREF0178_03398 [Bilophila sp. 4_1_30]
Length = 1084
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 136/297 (45%), Gaps = 58/297 (19%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA----ENLGLIRT 438
A E+AE S K+ LA SH++R + IIG+ L + T+L + L I T
Sbjct: 556 AKEEAETASRAKSDFLANMSHEIRTPMNGIIGMSHLTLQ-----TELTSRQRDYLTQIST 610
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDP 496
+ LL I+N +++ SKIEAGK+E+ +F L Q+LEEV + +KG++++ + P
Sbjct: 611 SANTLLRIVNDILDFSKIEAGKLEMEHADFQLEQVLEEVASIADLSAAEKGLELLSRISP 670
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
VL GD ++L QIL NLV N++KFT GH+ V + R+
Sbjct: 671 DVPPVL-----EGDALRLSQILLNLVGNAIKFTQSGHVLVS------------VTQERHE 713
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
SK + F V DTG G+ ++ ++FE F Q
Sbjct: 714 GSKT----------------------------RLRFSVSDTGIGMTSEQIGNLFESFTQA 745
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
+ G GLGL I + +V+LM GEI + PG G F F V ER
Sbjct: 746 DNSTTRRYGGTGLGLAICKRLVNLMGGEIHVRST-PGH-GSDFVFTAEFGTVAVPER 800
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 13/130 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G + L+ ED+AI +V + +L G E +G EA + + EG YD
Sbjct: 955 LMGARVLLAEDNAINRQVANEILQSSGVSVEPAGDGLEAVEKLW--------EGG---YD 1003
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MP M+G +ATR++R E ++D ++PIIA+TAHAM G K + GM ++ KP
Sbjct: 1004 AVLMDIQMPGMDGLKATRILR-EYARFD-NLPIIAMTAHAMNGDREKSLSVGMQDYIAKP 1061
Query: 1080 LQKDKLLDVV 1089
++ LL +
Sbjct: 1062 IEPSVLLSTL 1071
>gi|359688370|ref|ZP_09258371.1| multi-sensor hybrid histidine kinase [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418748435|ref|ZP_13304727.1| PAS domain S-box protein [Leptospira licerasiae str. MMD4847]
gi|418756108|ref|ZP_13312296.1| PAS domain S-box protein [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|384115779|gb|EIE02036.1| PAS domain S-box protein [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|404275504|gb|EJZ42818.1| PAS domain S-box protein [Leptospira licerasiae str. MMD4847]
Length = 864
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 125/256 (48%), Gaps = 48/256 (18%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R + +IG+ EL D+N T+ E +I+ + LL I+N +++
Sbjct: 347 KSEFLAMMSHEIRTPMNGVIGMTELLI-DSNLNTEQKEYAEIIQKSGESLLNIINDILDY 405
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGSCHVRGDR 511
SKIE+G + L EF++ + +EEV+D++ +K +D+V LDP + D
Sbjct: 406 SKIESGTLSLEIREFSVIETIEEVLDLFRSRAAQKQIDLVYYLDPNVPD-----RILCDS 460
Query: 512 VKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEG 571
++LKQIL NL+ N++KFT +G I + A V SK KL+
Sbjct: 461 LRLKQILINLIGNALKFTEQGEIFLSAEV-----------------SKLEGKLY------ 497
Query: 572 FDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631
F + DTG GIP +KQ +F+ F QV ++ G GLGL
Sbjct: 498 -----------------TILFSIRDTGIGIPSEKQKELFQPFYQVDTSSTRKYGGTGLGL 540
Query: 632 GIVQSMVHLMKGEIAI 647
I ++ +M G I +
Sbjct: 541 SISSRLIEMMGGIIWV 556
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 24/170 (14%)
Query: 931 AEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFE 990
AE G+ ++ S +A Q + S+ P K +V ED+ I + ++ KLG +
Sbjct: 709 AEGGSKAKANTRS-SYLAGQKEILSSQFPF---KIMVAEDNEINQTLAKRIIQKLGYEPL 764
Query: 991 VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK----EEEQY 1046
+ NGKEA L LR++ + I MD MP M+G +AT++IR E + Y
Sbjct: 765 IVPNGKEA-------LIALREK----KINLIFMDVHMPEMDGLQATQVIRNTWSVESQPY 813
Query: 1047 DVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096
IIA+TA AM G + AGM+ +++KP+ ++L+ V++ T+
Sbjct: 814 -----IIAMTAAAMQGDRDLCLRAGMNDYISKPIVFEELIHVMRKAGNTL 858
>gi|421610495|ref|ZP_16051667.1| sensory box sensor histidine kinase/response regulator
[Rhodopirellula baltica SH28]
gi|408498670|gb|EKK03157.1| sensory box sensor histidine kinase/response regulator
[Rhodopirellula baltica SH28]
Length = 903
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 135/280 (48%), Gaps = 47/280 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
+AT+ AE+ + K+ LA SH++R + +I+G +L + D ++ IR
Sbjct: 419 DATDAAEQANRAKSQFLANMSHEIRTPMTSILGYADLISQ-KQIDEDTRSHVATIRRNGA 477
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LLG++N ++++SKIEA +ME+ +E NL L+E+V+ + +K +++ +D C G +
Sbjct: 478 FLLGLINDILDLSKIEADRMEVFDESVNLIHLIEDVLSIMQVRAAEKDLEIRVDYC-GKI 536
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
++ D +L+QIL NLV N++KFT GH VR AV+
Sbjct: 537 --PREIQADSKRLRQILVNLVGNAVKFTEAGH--VRVAVR-------------------- 572
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
E D +H F+V DTG GI ++ +F+ F Q + +
Sbjct: 573 -------AEQIDRRTRVH------------FDVVDTGIGISDERMKKLFQPFSQGDPSIM 613
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
G GLGL I Q +V ++ GEI + G CF F
Sbjct: 614 RTYGGTGLGLVISQRLVAMLGGEITARSRV--NEGSCFSF 651
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV +D + + +L GA + +G++A DH+ + LS ++ P +++
Sbjct: 701 QVLVADDRRDIRYLLKRILAGAGASVDEVEDGQQAVDHIAQTLS-----SQSCPQ-VVIL 754
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP ++G+EAT+ +R IIALTA AM G + +D G D +++KP+
Sbjct: 755 DMQMPNLDGFEATQELRT----LGYTGLIIALTADAMDGDRQRCLDCGCDDYMSKPIDSA 810
Query: 1084 KLL 1086
KL+
Sbjct: 811 KLI 813
>gi|168018625|ref|XP_001761846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686901|gb|EDQ73287.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 308
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 142/261 (54%), Gaps = 17/261 (6%)
Query: 403 HDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKME 462
H++R +A IIGL+++ + D+A ++ I C+ L+ ILNS ++++K+E+GK+
Sbjct: 1 HELRTPMACIIGLLDMLLSE-KLLDDIANSVRQIHRCATSLVAILNSALDIAKVESGKLV 59
Query: 463 LVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLV 522
L EF+L L ++D++ KG+ + L D +V GD ++ Q+ NL+
Sbjct: 60 LEMAEFDLEAELTALIDVFSVQCDNKGLFICLQLADDV---PKNVVGDSARVMQVFTNLI 116
Query: 523 SNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVE 582
NS+KFTS G ISVRA +A+ + ++ S+L R F L+ + +
Sbjct: 117 GNSIKFTSCGRISVRAR----------LATPEDGVNPTSSRLQRRGFSSFS-LETMFTDL 165
Query: 583 RNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMK 642
R + + FEVDDTG GI + +FE FVQ + G GLGLGIV+S+V +M
Sbjct: 166 RTSDEVIILFEVDDTGPGIEPTLRERVFENFVQGAASTTRTHGGTGLGLGIVKSLVQIMG 225
Query: 643 GEIAIADKEPGERGVCFRFNV 663
G+I I +KE +G F+F +
Sbjct: 226 GDIRIVEKEG--QGSVFQFTI 244
>gi|255547688|ref|XP_002514901.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223545952|gb|EEF47455.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 1005
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 146/298 (48%), Gaps = 18/298 (6%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
M ++AE + K+ LA SH++R + ++G++ + D N + + +
Sbjct: 403 MELKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLHMLM-DTNLDVTQQDYVRTAQASG 461
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K L+ ++N V++ +KIE+GK+EL +FNL +L++V+ ++ KGV++ + D
Sbjct: 462 KALVSLINEVLDQAKIESGKLELENVQFNLRAILDDVLPLFSEKAQVKGVELAVYISDSV 521
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKK---SFKQDIIASNRNVI 557
+ GD + +QI+ NL+ NS+KFT +GH+ V + ++ S + +S+RN +
Sbjct: 522 ---PELLIGDPGRFRQIIINLMGNSIKFTHQGHVFVTVHLVEEVIDSIDVETGSSSRNTV 578
Query: 558 SKCLSKLFFRNKEGFDDLD------ALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFE 611
S R+ GF AL + NL+ V+DTG+GIP + Q IF
Sbjct: 579 SGFPVADRRRSWAGFRTFSQEGSNRALLPSSDHINLI---VSVEDTGEGIPLEAQPRIFI 635
Query: 612 EFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVC 669
F+QV + G G+GL I + +V LM GEI G F F + C
Sbjct: 636 PFMQVGPSTSRKYGGTGIGLSISKCLVGLMNGEIGFVSIP--RIGTTFTFTAVFANGC 691
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 28/150 (18%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G+K L+V+D+++ LKV + L K GA +G++A K+L+ + +D
Sbjct: 856 LLGRKILIVDDNSVNLKVAAGALKKYGADVVCIESGEKAI----KLLTPPHQ------FD 905
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQY------------------DVHIPIIALTAHAMA 1061
MD +MP M+G+EATR IR E + + H+PI+A+TA +
Sbjct: 906 ACFMDIQMPEMDGFEATRRIRDREHNFKNSIQSGDKTVGGYENLPNWHVPILAMTADVIQ 965
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLDVVKS 1091
+ GMD +++KP + ++L V S
Sbjct: 966 ATHEECSKCGMDGYVSKPFEAEQLYREVSS 995
>gi|153837140|ref|ZP_01989807.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
parahaemolyticus AQ3810]
gi|260900476|ref|ZP_05908871.1| LuxQ, periplasmic family [Vibrio parahaemolyticus AQ4037]
gi|433660290|ref|YP_007301149.1| Autoinducer 2 sensor [Vibrio parahaemolyticus BB22OP]
gi|149749557|gb|EDM60303.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
parahaemolyticus AQ3810]
gi|308106963|gb|EFO44503.1| LuxQ, periplasmic family [Vibrio parahaemolyticus AQ4037]
gi|432511677|gb|AGB12494.1| Autoinducer 2 sensor [Vibrio parahaemolyticus BB22OP]
Length = 858
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 159/324 (49%), Gaps = 58/324 (17%)
Query: 350 IAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASL 409
I+G+I G I + +A K+ A +AE+ + + LAK SH++R +
Sbjct: 448 ISGIIVQGQDITTLIEAEKQSNL----------ARREAEKSAQARADFLAKMSHEIRTPI 497
Query: 410 AAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFN 469
I+G+ +L +D+ + + ++R + LL +LN +++ SKIE GK + + F+
Sbjct: 498 NGILGVAQLL-KDSVEAEEQKNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFS 556
Query: 470 LAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT 529
A + + ++Y + KGV++V+ + + G+ + D+V+L QIL NLVSN++KFT
Sbjct: 557 FADTMRTLENIYRPICENKGVELVI---ENRLDGNVEIFTDQVRLNQILFNLVSNAVKFT 613
Query: 530 SEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQ 589
G + + A +++ F+ G D N L+
Sbjct: 614 PSGCVRLHAELEQ----------------------FY----GAD----------NSVLV- 636
Query: 590 FEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIAD 649
E+ DTG GI DK + +FE FVQ + T G GLGL IV+++V ++ G++ +
Sbjct: 637 --VEISDTGIGIESDKLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRS 694
Query: 650 KEPGERGVCFRFNVLLTAVCERER 673
++ +G F V+ V +RER
Sbjct: 695 QKG--QGTTF---VVTLPVKDRER 713
Score = 47.0 bits (110), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+VED+ + A K + + ++G EA + + K YD I+M
Sbjct: 735 KVLLVEDNHTNAFILKAFCTKYKMQVDWAKDGLEAMEFL-----------KDHSYDLILM 783
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D ++P + G E T+ IR + + PI A TA + ++AG ++ L KP++++
Sbjct: 784 DNQLPHLGGIETTKEIR---QNLKLGTPIYACTADTAQETSDAFMEAGANYVLLKPIKEN 840
Query: 1084 KL 1085
L
Sbjct: 841 AL 842
>gi|338532209|ref|YP_004665543.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
gi|337258305|gb|AEI64465.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
Length = 3669
Score = 114 bits (285), Expect = 3e-22, Method: Composition-based stats.
Identities = 87/279 (31%), Positives = 134/279 (48%), Gaps = 42/279 (15%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELC--HEDANPGTDLAENLGLIRTCSKD 442
EQ S K+ LA SH++R L +++ L +L ++D N T E I D
Sbjct: 2956 EQLTVISKYKSEFLANMSHELRTPLNSLLILAKLLSDNKDGNLSTKQVEYANTIYASGGD 3015
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N ++++SK+EAGKM++ + L +L + + + V +KG+D ++ G+
Sbjct: 3016 LLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFIERSFLPVAEQKGLDFAVEVGPGA-- 3073
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEG--HISVRAAVKKKSFKQDIIASNRNVISKC 560
H+R D +L+Q+L NL+SN+ KFT EG + V+ A F +++ +R V+
Sbjct: 3074 -PRHIRTDPQRLQQVLKNLLSNAFKFTDEGSVQLKVKLAEPGTHFDHEVLRRSRYVLG-- 3130
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
F V DTG GI +DKQ IFE F Q +
Sbjct: 3131 -------------------------------FSVVDTGIGIARDKQRLIFEAFQQADGST 3159
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
G GLGL I + + L+ GEI +A EPG RG F
Sbjct: 3160 ARKYGGTGLGLSISREIAKLLGGEIQVA-SEPG-RGSTF 3196
Score = 67.4 bits (163), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 75/142 (52%), Gaps = 14/142 (9%)
Query: 949 AQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSD 1008
AQ K +E L+ KK LVV+DD + ++VL G + NG+ A + +L
Sbjct: 3537 AQRSDKDTE--LSSKKVLVVDDDMRNIFALTSVLENHGMQVVFAENGRAAIE----MLEQ 3590
Query: 1009 LRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV 1068
R D ++MD MP M+G+E R IRK+ + +PIIA+TA A+ K +
Sbjct: 3591 HRD------VDIVLMDVMMPEMDGYETMRAIRKDLKYSS--LPIIAVTAKALKDDREKCM 3642
Query: 1069 DAGMDFHLTKPLQKDKLLDVVK 1090
AG +L KP+ DKLL++++
Sbjct: 3643 AAGASDYLPKPVDTDKLLELIR 3664
>gi|237746472|ref|ZP_04576952.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
formigenes HOxBLS]
gi|229377823|gb|EEO27914.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
formigenes HOxBLS]
Length = 765
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 149/316 (47%), Gaps = 50/316 (15%)
Query: 346 VLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDV 405
L+ +A + +L +++ L+ K ++E + AL A E A+ + K+ L SHD+
Sbjct: 204 TLLIMAVMAALFIYLYLLKKKNEQEETMQNAL---REALESAQNANAAKSQFLFNMSHDI 260
Query: 406 RASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVE 465
R + AIIG+ L + + + + LG I S+ LLG++N V++MSKIE+GK+ L
Sbjct: 261 RTPMNAIIGMTTLATLHLHEPSRIRDCLGKISASSRHLLGLINDVLDMSKIESGKIALNN 320
Query: 466 EEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH--VRGDRVKLKQILCNLVS 523
EEF+L +L+ + + + +D+ D SV G H V GD +++ QIL NL+
Sbjct: 321 EEFDLPELVAGLFTILQQQASSRRLDL-----DISVSGIDHEKVIGDTLRVNQILLNLMG 375
Query: 524 NSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVER 583
N++KFT G +R A+ + +
Sbjct: 376 NALKFTPAGG-RIRLAITELP-------------------------------------PQ 397
Query: 584 NPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKG 643
P + F V DTG G+ D I+ F + K EG GLG+ I +++V +M G
Sbjct: 398 YPGYGTYRFVVSDTGIGMDSDFLKKIYNPFERAKTATGSKIEGTGLGMAITKNIVDMMNG 457
Query: 644 EIAIADKEPGERGVCF 659
+I + EPG +G F
Sbjct: 458 QIDV-QSEPG-KGTTF 471
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 18/147 (12%)
Query: 949 AQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKL-GAKFEVCRNGKEA---FDHVCK 1004
A+ GK + L G+ L+VED+ + ++++ + A ++ NGKEA F H
Sbjct: 626 AEPAGKSGAE-LQGR-ILLVEDNEMNQEISNEFIRHCSAATIDMAWNGKEALQLFSHA-- 681
Query: 1005 ILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK-EEEQYDVHIPIIALTAHAMAGV 1063
EG Y + MD +MP M+G+EATRLIR+ E+ PI+A++A+A
Sbjct: 682 ------PEGY---YSLVFMDIQMPEMDGYEATRLIRQFEQASGRFPAPIVAMSANAFMED 732
Query: 1064 ASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
AGMD ++TKP+ + + ++
Sbjct: 733 VENAYAAGMDGYVTKPVSMEDIRSALR 759
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 13/129 (10%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY--IMM 1023
LVV+DD + + TSA+L ++G + E +G EA V + L DY +++
Sbjct: 498 LVVDDDRDICENTSAMLEEIGMRSEWVLSGAEAVGKV--------ETAHRLNRDYHSVII 549
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G E TR IR +PII LTA+ + + +AG++ L KPL K
Sbjct: 550 DWKMPEMDGLETTRCIRS---IVGNELPIIILTAYDWTEIEEEAKEAGVNAFLAKPLFKS 606
Query: 1084 KLLDVVKSI 1092
+L V+ I
Sbjct: 607 QLYHVMHEI 615
>gi|172039202|ref|YP_001805703.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
51142]
gi|171700656|gb|ACB53637.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
51142]
Length = 864
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 132/281 (46%), Gaps = 59/281 (20%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446
AE+ + K+ LA SH++R L AI+G V+L + +D NL I + LLG+
Sbjct: 400 AEKANHAKSEFLASMSHELRTPLNAILGYVQLMLRSTSLSSDHRNNLQTINDSGEHLLGL 459
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC- 505
+N V+EMSKIEAG++ L E +F+L LL+E+ + K + + S + C
Sbjct: 460 INDVLEMSKIEAGQIVLKETDFDLYHLLDELETLLQLKATIKQLSL-------SFIRDCT 512
Query: 506 ---HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++R D KL+Q+L N++ N++KFT +G ++V+ +
Sbjct: 513 VPQYIRTDEKKLRQVLINIIGNAIKFTEKGRVTVKVWCEGH------------------- 553
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
+LF F V+DTG+GI K++ +F FVQ K +
Sbjct: 554 RLF--------------------------FAVEDTGQGIEKEELEQLFSPFVQAK-AGVN 586
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
EG GLGL I ++LM G+I + G F FN+
Sbjct: 587 SGEGTGLGLPISSKFINLMGGKIMV--NSVVTEGTTFTFNI 625
Score = 48.9 bits (115), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED + +L +G + NG+EA L D A I M
Sbjct: 656 RILVVEDKQTNRDLLVKLLTLVGFDVKEATNGREAIA-----LWD------AWEPHLIWM 704
Query: 1024 DCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D +MP+MNG+EAT+ I+ + Q V IIALTA +++D G D KP +
Sbjct: 705 DMQMPIMNGYEATKRIKASLKGQATV---IIALTASVFEEQRQEVLDCGCDDFAAKPFRS 761
Query: 1083 DKLLD 1087
++ D
Sbjct: 762 QEIFD 766
>gi|255034075|ref|YP_003084696.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
18053]
gi|254946831|gb|ACT91531.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
18053]
Length = 1287
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/346 (28%), Positives = 159/346 (45%), Gaps = 58/346 (16%)
Query: 335 SRNNKLSLMLLVLMFIAG--VISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSM 392
S+ + ++ +LL LM + G +I + I I K A+ E+ + A E AE S
Sbjct: 722 SKESFIAEVLLNLMKVNGKEIIQAVIRDITIRKRAELEL---------LEAREHAEAASK 772
Query: 393 NKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVME 452
K+ LA SH++R L ++G +L + N + + ++ + L+ I+N +++
Sbjct: 773 LKSEFLANMSHEIRTPLNGVVGFTDLLMK-TNLDETQQQYMSMVFQSANSLMDIINDILD 831
Query: 453 MSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-PCDGSVLGSCHVRGDR 511
SKIEAGK+EL E+ +L ++ V DM + +K ++++L+ P D C D
Sbjct: 832 FSKIEAGKLELTPEKTDLLEICGRVADMVTYQAQQKHLEMLLNIPADIPRFVWC----DS 887
Query: 512 VKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEG 571
V+L+QIL NL+SN++KFT +G I ++ + K G
Sbjct: 888 VRLRQILVNLLSNAVKFTIKGEIELKIELLNKV-------------------------SG 922
Query: 572 FDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631
D F F V DTG GI Q IFE F Q + G GLGL
Sbjct: 923 LD--------------YTFRFSVRDTGIGIDPQNQRRIFEAFSQEDSSTTKRFGGTGLGL 968
Query: 632 GIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTD 677
I S++ LM+ + + + E+G F F+V AV +R + D
Sbjct: 969 TISNSLLGLMESRLQLTSEL--EKGSTFFFDVTFRAVEGEDRFEWD 1012
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 15/124 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCR--NGKEAFDHVCKILSDLRKEGKALPYDYI 1021
K L+ ED I + + ++L K+ E+ NG+EA + +A D +
Sbjct: 1166 KVLIAEDHKINMLLVKSMLAKILVNSELIEAANGREAIEAF-----------RANRPDIV 1214
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
MD +MP MNG+EATR IR+ E + +PIIALTA + G K ++AGMD +LTKP+
Sbjct: 1215 FMDIQMPEMNGYEATREIRRAEGR--SRVPIIALTAGTVVGEREKCIEAGMDDYLTKPVL 1272
Query: 1082 KDKL 1085
KD L
Sbjct: 1273 KDTL 1276
>gi|428318556|ref|YP_007116438.1| integral membrane sensor hybrid histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
gi|428242236|gb|AFZ08022.1| integral membrane sensor hybrid histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
Length = 887
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 138/281 (49%), Gaps = 45/281 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+AE + K+ +A SH++R+ L AI+G +L N + EN G+I
Sbjct: 414 AKEKAEVANQAKSTFIANMSHELRSPLNAILGFSQLMVRATNMPPEQYENAGIIYRSGDY 473
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N+V+++SKIEAGK L +F+L LL ++ DM + G+ +V +
Sbjct: 474 LLTLINNVLDLSKIEAGKTTLNLTDFDLHILLNDLEDMLHLRANNAGLKLVFQRTENVPR 533
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
C D+VKL+Q+L NL+SN++KFTSEG I++ NV
Sbjct: 534 YIC---TDQVKLRQVLINLLSNAIKFTSEGQITL------------------NV------ 566
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
F ++ D+ LH F + DTG GI + +F+ F Q +
Sbjct: 567 ---FLGEQETTDVFNLH------------FRIRDTGVGIAAAELPKLFDAFSQA-QAGKD 610
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+EG GLGL I + V LM G+I++ + E G +G F+ +
Sbjct: 611 LEEGTGLGLAISRKFVQLMGGDISV-ESELG-KGTTFQLYI 649
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L V+D +I ++ +L LG + + NG+EA I + P+ I M
Sbjct: 679 KILTVDDKSINRQLLIKLLSPLGFEVKEASNGQEA----IAIWDEWE------PH-LIWM 727
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D MPVM+G+EAT+ I+ + +IALTA + + ++ AG D + KP
Sbjct: 728 DMRMPVMDGYEATKYIKSTTKGNAT--AVIALTASVLEEEKAIVLSAGCDDFVRKPF 782
>gi|261253472|ref|ZP_05946045.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891
= ATCC 33934]
gi|417955975|ref|ZP_12598973.1| sensory box histidine kinase/response regulator [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|260936863|gb|EEX92852.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891
= ATCC 33934]
gi|342811495|gb|EGU46532.1| sensory box histidine kinase/response regulator [Vibrio orientalis
CIP 102891 = ATCC 33934]
Length = 1037
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/378 (25%), Positives = 168/378 (44%), Gaps = 66/378 (17%)
Query: 299 KIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGL 358
K+M KKY A + V++ Y + G ++ K + I L
Sbjct: 417 KLMPKKY---------ASMHQVFIDRYRATGRSKIIGVKTKDGRLGREFQAINKAGELFP 467
Query: 359 FIILIAKAAKREMFLCAALIKQMNATEQAERKSM-----------NKTFALAKASHDVRA 407
++ IA+ + + + L+K ++ +QAE + +K+ LA SH++R
Sbjct: 468 ILLSIAQVETNDGVIYSGLVKDISQQKQAENALIAAKEEAEQAARSKSEFLAVMSHEIRT 527
Query: 408 SLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEE 467
+ IIG+++L E+ T + L T + LLG+LN +++ SKI+A K+EL +
Sbjct: 528 PMNGIIGMLDLLLENNL-NTSQSHQAYLAHTSALSLLGLLNDILDFSKIDADKLELERQH 586
Query: 468 FNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMK 527
FNL +L + + V+++LD + + D +++QI NLVSN++K
Sbjct: 587 FNLRHMLGDFAEQMAASLTNPNVEIILDMVQ---VEHSMILADSTRIRQIFSNLVSNALK 643
Query: 528 FTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNL 587
FT +G + + ++ E + N
Sbjct: 644 FTEQGEVVITVRLE----------------------------------------ENDENT 663
Query: 588 LQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
Q + D+G GIP+D+ NS+F++F QV + G GLGL IV+ + MKG + +
Sbjct: 664 WQLNASIKDSGIGIPQDRLNSLFDKFSQVDASTTRRYGGTGLGLAIVKRLCQAMKGSVTV 723
Query: 648 ADKEPGERGVCFRFNVLL 665
+ E G +G F F++L+
Sbjct: 724 S-SEAG-KGSEFSFHILV 739
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 15/136 (11%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
+G + L+VED+ + V + VL K+G + NGKEA +LS + +D
Sbjct: 911 SGLQLLIVEDNRVNQIVITGVLHKMGLDSTIANNGKEAL----SVLSSSKS------FDI 960
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MDC+MP M+G+EAT IR E +V +IPIIA+TA+AM DAGM+ LTKP
Sbjct: 961 ILMDCQMPEMDGYEATHRIRNGEGGDNVKNIPIIAMTANAMESDRKACKDAGMNDFLTKP 1020
Query: 1080 LQ----KDKLLDVVKS 1091
L K+KL++ KS
Sbjct: 1021 LNRSLLKEKLMEWSKS 1036
>gi|258514818|ref|YP_003191040.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
DSM 771]
gi|257778523|gb|ACV62417.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
DSM 771]
Length = 1172
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 143/289 (49%), Gaps = 42/289 (14%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN 432
L A I+ A EQAE + K+ LA SH++R + I+G E+ A ++ E+
Sbjct: 410 LSRARIEAERAKEQAESANRAKSDFLAVMSHEIRTPMNGILGFAEILLNQA-LSSEQKES 468
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
+ I C + LL ++N ++++SKIE+GKM L E +F+L ++++V+ KG+++
Sbjct: 469 VQAISLCGEQLLDLINEILDLSKIESGKMVLEETDFSLENIIKDVITTVRQKAQDKGLEI 528
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
++ D GD ++++QIL NL+ N++KFT +G SV +V K+
Sbjct: 529 RVNFLDDI---PQRFIGDSIRIRQILSNLLFNAVKFTMQG--SVIISVSKRQ-------- 575
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
+C + DD + + EV DTG GI +DK+ IF+
Sbjct: 576 -----EECHER---------DD------------IFPLQIEVADTGIGISQDKRELIFDA 609
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
F Q + G GLGL I +S++ LM GEI + +P +G F F
Sbjct: 610 FTQAEGVIAQKFGGSGLGLTICRSLLDLMGGEIWVNSNKP--QGTIFTF 656
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 15/143 (10%)
Query: 950 QSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDL 1009
+SDG S K LV ED + K+ + L G + + ++G E +
Sbjct: 934 ESDGGESGK--KAYNILVAEDHILNQKIIESFLVTEGHRVTMVKDGAEVLHAL------- 984
Query: 1010 RKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVD 1069
K+ +D I+MD +MP M+G+E IR E++ +PI+A+TA+AM G K +
Sbjct: 985 ----KSNNFDLILMDMQMPTMDGYETMARIRAEKKWGS--MPIVAITAYAMKGDEEKCFE 1038
Query: 1070 AGMDFHLTKPLQKDKLLDVVKSI 1092
AG +++L+KP++K L+ ++ I
Sbjct: 1039 AGCNYYLSKPIRKADLISLIDRI 1061
>gi|39656315|gb|AAR29880.1| putative histidine kinase HHK1p [Cochliobolus heterostrophus]
gi|452004803|gb|EMD97259.1| hypothetical protein COCHEDRAFT_91652 [Cochliobolus heterostrophus
C5]
Length = 2370
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 155/333 (46%), Gaps = 68/333 (20%)
Query: 375 AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLG 434
A I+ M E+A + K+ LA SH++R L +IG+ EL A+P E G
Sbjct: 1872 ANAIRNMKLKEEAAKA---KSLFLANVSHELRTPLNGVIGMSELL--KASPLN--GEQSG 1924
Query: 435 L---IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD 491
IR C+ LL I+N +++ SK+EAGKM ++E +L + + EVV + ++G+
Sbjct: 1925 YADSIRVCADTLLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLK 1984
Query: 492 VV----LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFK- 546
+ LDP V GD V+L QIL NL+SNS KFT G ++VRA V +++ +
Sbjct: 1985 TIEQLELDP-------EMLVMGDPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDQETSEW 2037
Query: 547 QDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQ 606
D+ S V DTG GIP +++
Sbjct: 2038 ADVTCS-----------------------------------------VIDTGIGIPDEQK 2056
Query: 607 NSIFEEFVQVKETALGHQEGLGLGLGIVQSMV-HLMKGEIAIADKEPGE-RGVCF--RFN 662
+F F Q++ ++ G GLGL I ++++ ++M G + + D +PG+ V F RF
Sbjct: 2057 QKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRL-DSQPGKGTTVTFSLRFK 2115
Query: 663 VLLTAVCERERPDTDEEDPRTHNDWPQTGLHQH 695
+ A ++ + E DP + H+H
Sbjct: 2116 KVPKARAGDQQQRSREPDPMARFSSQENNGHEH 2148
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 115/254 (45%), Gaps = 22/254 (8%)
Query: 842 VPSLSCKVVWIDNSVIRNAHSREYRL----LPICDHVISRPFHGSRLIEVLKLLPECKGA 897
+P + +++ S I ++ +R Y L IC +I HG+ ++
Sbjct: 2051 IPDEQKQKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGKGTTVTF 2110
Query: 898 SQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSE 957
S R F K+ + + Q +P+P+ + S S C L V
Sbjct: 2111 SLR-FKKVPKARAGDQQQRSREPDPMARFSSQENNGHEHTSGGCIDLSTV---------- 2159
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
P + + ED+ I ++ + + KLG K + +G + D + + + R P
Sbjct: 2160 -PRRDLRVCIAEDNLINQRIAISFVQKLGFKCDAYLDGFKTIDALERASENGR------P 2212
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
+ ++MD +MP +G+EAT+LIRK ++ IIA+TA A+ G K +++GM+ +L
Sbjct: 2213 FHLVLMDVQMPHCDGYEATKLIRKHPNPEIRNVLIIAMTASAIQGDREKCIESGMNNYLA 2272
Query: 1078 KPLQKDKLLDVVKS 1091
KP++ L +++S
Sbjct: 2273 KPVRAQTLKALLES 2286
>gi|71908503|ref|YP_286090.1| peptidase M52, hydrogen uptake protein [Dechloromonas aromatica
RCB]
gi|71848124|gb|AAZ47620.1| Peptidase M52, hydrogen uptake protein [Dechloromonas aromatica
RCB]
Length = 1053
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 142/285 (49%), Gaps = 48/285 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA-NPGTDLAENLGLIRTCS 440
A EQAE S K+ L+ SH+VR L AI+GL +LC + NP + ++L IR +
Sbjct: 384 QAKEQAEEASRAKSEFLSNMSHEVRTPLNAILGLSDLCLQTPLNPQQN--QHLSKIRLAA 441
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
LLGI+N +++ S+IEAGK+ + + F L LLEE+ D+ +K +++ +D +
Sbjct: 442 DHLLGIINDILDFSRIEAGKLSIEKLIFELPSLLEEISDLLIGRIEEKNLELCVDI---A 498
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
S GD ++LKQ++ NL+ N++KF+ +G SVR + I +++ N S
Sbjct: 499 AEASRSFVGDPLRLKQVIINLLGNAIKFSDQG--SVRLGCR-------IDSTDHNSTS-- 547
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
LH F V D G GI +++QN++F F Q +
Sbjct: 548 -----------------LH------------FSVSDEGIGISEEQQNALFSAFSQADTST 578
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + +V LM G I + + PG G F F + L
Sbjct: 579 TRRFGGSGLGLVISKRLVELMGGRIWL-ESTPGN-GSTFHFTIRL 621
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 13/130 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L+ LVV+D + + + G + NG+EA + DL
Sbjct: 786 LSNTDILVVDDIELNRDLMRELFATAGLNIRLACNGREAITAIHSKKPDL---------- 835
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MDC+MPVM+G+ ATR +R E + +PIIALTA A+ + + AGM+ ++TKP
Sbjct: 836 -VLMDCQMPVMDGFSATRELRARPEYAE--LPIIALTAGALDHDREQCLAAGMNAYVTKP 892
Query: 1080 LQKDKLLDVV 1089
+ +KLL V+
Sbjct: 893 VNLEKLLRVI 902
>gi|254422420|ref|ZP_05036138.1| PAS fold family [Synechococcus sp. PCC 7335]
gi|196189909|gb|EDX84873.1| PAS fold family [Synechococcus sp. PCC 7335]
Length = 1023
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 141/286 (49%), Gaps = 46/286 (16%)
Query: 391 SMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRTCSKDLLGI 446
S K+ LA SH++R + A++G+ EL GT+L+ + +IRT LL +
Sbjct: 337 SQAKSSFLAMMSHEIRTPMNAMLGMAELLD-----GTELSPQQQDFINIIRTGGNTLLTV 391
Query: 447 LNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDGSVLGS 504
+N +++ SKIE+ +EL F+L + +E+V+ ++ + +K + + +++P + + +
Sbjct: 392 INDILDFSKIESNNLELEISRFDLYECIEQVLTLFSNQAEEKQLSLTSIVEPIELDRIPT 451
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
+ +GD +L+QIL NLVSNS+KFT EG +S++ V +AS
Sbjct: 452 -YFKGDVTRLQQILSNLVSNSIKFTQEGEVSLQVKVGA-------VASE----------- 492
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
E + + +F V DTG GI ++K +F+ F QV +
Sbjct: 493 --------------ERAEEPSSNYELQFLVTDTGIGIAEEKIPYLFQPFSQVDASMTRRY 538
Query: 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
G GLGL I + +V LM GE+ + K G F F + L A E
Sbjct: 539 GGTGLGLAISKQLVELMGGEMGMVSKVGS--GSTFHFCIRLKACNE 582
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 22/137 (16%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
EKPL + L+ ED + V +L G + +V NGKEA + K
Sbjct: 753 EKPL---RILLTEDILLNQTVALQMLSSYGYQADVANNGKEAVAAL-----------KEQ 798
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKE---EEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
PYD ++MD +MP M+G EATR IR E E+ Y I+A+TAHAM G + + AGM+
Sbjct: 799 PYDLVLMDVQMPEMDGLEATRTIRAETTIEQPY-----IVAMTAHAMQGDRERCLGAGMN 853
Query: 1074 FHLTKPLQKDKLLDVVK 1090
++ KP+++ + V++
Sbjct: 854 DYVRKPIRRRDVAAVLQ 870
>gi|386826963|ref|ZP_10114070.1| PAS domain S-box [Beggiatoa alba B18LD]
gi|386427847|gb|EIJ41675.1| PAS domain S-box [Beggiatoa alba B18LD]
Length = 1133
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 151/329 (45%), Gaps = 58/329 (17%)
Query: 353 VISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMN--------KTFALAKASHD 404
++ + L +LI + ++ I + TE A R++ + KT LA SH+
Sbjct: 619 LVPVRLHSLLIERGGHNYIWSSVTDITEQKQTEAALREAKHVAEVANSAKTTFLANMSHE 678
Query: 405 VRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELV 464
+R L AI+G ++ + D N E +G+I+ LL ++N +++++KIEA ++EL
Sbjct: 679 LRTPLNAILGYAQILYRDINLNPQHRERIGIIQRAGDYLLTLINDILDIAKIEANRLELH 738
Query: 465 EEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSN 524
E +L+Q L ++V ++ +KGV+ + +L V D +L+QIL NL+SN
Sbjct: 739 PSELDLSQFLSDLVHLFQTRAEQKGVE--FNYKTYGILPKI-VYADAKRLRQILINLLSN 795
Query: 525 SMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERN 584
++KFT+ G ++ ++ S
Sbjct: 796 AVKFTNRGSVTFTVEYRQDS---------------------------------------- 815
Query: 585 PNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGE 644
QF F ++DTG GI + IF F Q+ + Q G GLGL I + +V +M G+
Sbjct: 816 ----QFCFHIEDTGIGIATESLEKIFLPFEQLGKPRYREQ-GTGLGLAITKKLVEMMAGQ 870
Query: 645 IAIADKEPGERGVCFRFNVLLTAVCERER 673
I ++ + +RG F + L + + +R
Sbjct: 871 ITVSSQ--YKRGTHFFIRLDLPPIIQTQR 897
>gi|424808429|ref|ZP_18233826.1| Sensor protein gacS [Vibrio mimicus SX-4]
gi|342323994|gb|EGU19776.1| Sensor protein gacS [Vibrio mimicus SX-4]
Length = 1586
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 133/272 (48%), Gaps = 44/272 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTD--LAENLGLIRTC 439
A AE+ + K+ LA SH++R L AI+GL L +++ + L + +G+
Sbjct: 830 QALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESLTESQHRLVDKIGI---S 886
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
K LLGI+N V+++SKIEA +M L +L + LEEV ++ K +D L+
Sbjct: 887 GKSLLGIVNVVLDLSKIEANEMILEALPLDLREFLEEVASVFSTQAEAKNLDFKLE---M 943
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
V V D ++L+QIL NL+SN++KFTS GHI++RA + K + + +N++
Sbjct: 944 GVDLPHWVIADSMRLRQILTNLLSNALKFTSVGHIALRAEIIDKFIWK---GAEKNIV-- 998
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
F + DTG GI ++ Q +F+ F Q +
Sbjct: 999 -------------------------------RFSITDTGIGISEEAQKRLFKPFSQADTS 1027
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651
G GLGL IV ++ LM+G+I + +E
Sbjct: 1028 TSRRFGGTGLGLSIVHKLLGLMEGKIGVESRE 1059
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 922 PLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKC-SEKPLNGKKFLVVEDDAIVLKVTSA 980
P+N F A +++S H + +V + + K L G + LVV+D A L+V
Sbjct: 1199 PINASAVFNA-VNSAVSQHSGNANRVLQSTRTEAIKAKWLLGFRVLVVDDSATNLEVADY 1257
Query: 981 VLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040
VL + GA V +G+EA ++ L+++ + YD ++MD +MP M+G E TR IR
Sbjct: 1258 VLTQAGATTNVVASGEEA-------INKLKQQNE---YDAVLMDVQMPGMDGLETTRYIR 1307
Query: 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKS 1091
+ + +PIIALTA A+ + +GM+ LTKP+ +L+ V+++
Sbjct: 1308 NTLKLHS--LPIIALTAGALVEERKRAFASGMNDFLTKPISPSRLISVLRT 1356
>gi|333909414|ref|YP_004483000.1| integral membrane sensor hybrid histidine kinase [Marinomonas
posidonica IVIA-Po-181]
gi|333479420|gb|AEF56081.1| integral membrane sensor hybrid histidine kinase [Marinomonas
posidonica IVIA-Po-181]
Length = 1057
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 151/306 (49%), Gaps = 53/306 (17%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIG-LVELCHEDANPG-TDLAENLGL 435
+KQ A ++AE+ + K+ LA SH++R L +IG L L + NP T LA L
Sbjct: 540 LKQSRAKDEAEQANRAKSEFLANMSHEIRTPLNGVIGSLTLLLNSKLNPNQTHLAT---L 596
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
+ S+ LL ++N ++++SKIEAG + + E F L+ L+EEV ++ +KG ++L+
Sbjct: 597 SKHSSESLLDVINDILDLSKIEAGALSIEAEPFLLSALVEEVTNIASLKAEEKG--IILN 654
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
+++ + + GDRV+LKQ++ NLV N++KFT G +++ + ++ A + +
Sbjct: 655 -VPATLVPNLTLSGDRVRLKQVIMNLVGNAVKFTQVGEVNLTLTIDRQ-------ADDHH 706
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
V+S F V DTG GI ++ Q+S+F+ F Q
Sbjct: 707 VLS---------------------------------FTVQDTGIGISEEAQSSLFQRFKQ 733
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL-TAVCERERP 674
+ G GLGL I + +V M GEI + ++GV F V + V E P
Sbjct: 734 ADGSTTRRFGGTGLGLAISKEIVAAMGGEIRL----ESQKGVGSSFYVQIPIQVSAIEAP 789
Query: 675 DTDEED 680
T D
Sbjct: 790 QTVSYD 795
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 80/145 (55%), Gaps = 13/145 (8%)
Query: 947 VAAQSDGKCSEK-PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKI 1005
+A +S+ E P+ K L+ ED+ V +L G + + NG+ A
Sbjct: 916 MATKSNNAALENSPVFNAKVLLAEDNLTNQIVARGLLNLYGVEVVIAENGERAVTL---- 971
Query: 1006 LSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK-EEEQYDVHIPIIALTAHAMAGVA 1064
+ + +D ++MDC+MPVM+G+EATR IR+ + + ++PIIAL+A+AM G
Sbjct: 972 -------AQQMTFDLVLMDCQMPVMDGYEATRHIRQFDGTETPANVPIIALSANAMKGDQ 1024
Query: 1065 SKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ AGM+ H+ KP+ +DKL++ +
Sbjct: 1025 DECFSAGMNDHIAKPVSQDKLVEAL 1049
>gi|357117708|ref|XP_003560605.1| PREDICTED: histidine kinase 4-like [Brachypodium distachyon]
Length = 997
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 156/325 (48%), Gaps = 45/325 (13%)
Query: 379 KQMNA-TEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGT--DLAENLGL 435
++M A ++AE + K+ LA SH++R + ++G++++ + T D A+
Sbjct: 365 RKMEALKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQT--- 421
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
+ C K L+ ++N V++ +KIEA K+EL F+L +L++VV ++ +KG+++
Sbjct: 422 AQVCGKALISLINEVLDRAKIEARKLELESVPFDLRSILDDVVSLFSSKSSEKGIEL--- 478
Query: 496 PCDGSVLGSCHVR----GDRVKLKQILCNLVSNSMKFTSEGHISVR---------AAVKK 542
+V S V GD + +QI+ NLV NS+KFT GHI V+ A K
Sbjct: 479 ----AVYVSERVPELLLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATEAK 534
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFE----------- 591
+ I +++ S S + GF+ D+ +S E LL +E
Sbjct: 535 VEPVVNGINGHKDETSTISSSVSHNTLSGFEAADSRNSWENFKLLLSYETNEMPYGSESD 594
Query: 592 -----FEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIA 646
V+DTG GIP Q+ +F F+Q + + G G+GL I Q +V LM G+I
Sbjct: 595 KVTLVVSVEDTGIGIPIHAQDRVFTPFMQADSSTSRNYGGTGIGLSISQCLVELMGGQIN 654
Query: 647 IADKEPGERGVCFRFNVLLTAVCER 671
+ + G F F +L CER
Sbjct: 655 FVSRP--QVGSTFTFTAVLQR-CER 676
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 29/150 (19%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK LVV+D+ + L+V + L K GAK E +GK+A L+ L+ K +D
Sbjct: 849 LLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDA-------LALLQVPHK---FD 898
Query: 1020 YIMMDCEMPVMNGWEATRLIR--------KEEEQY-----------DVHIPIIALTAHAM 1060
+MD +MP M+G+EATR IR +E++ Y + H+P++A+TA +
Sbjct: 899 LCLMDIQMPEMDGFEATRQIRAMEAKAHDQEDDAYNSEADSTAKRAEWHLPVLAMTADVI 958
Query: 1061 AGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
+ GMD +++KP ++ +L V+
Sbjct: 959 QATHEECTKFGMDGYVSKPFEEKQLFQAVE 988
>gi|449445312|ref|XP_004140417.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
Length = 1004
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 150/316 (47%), Gaps = 38/316 (12%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELC--HEDANPGTDLAENLGLIRTCSKDL 443
+AE + K+ LA SH++R + I+G++ L E ++ D A+ + C K L
Sbjct: 373 RAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQT---AQACGKAL 429
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLG 503
+ ++N V++ +KIEAGK+EL F+L +L++V+ ++ KGV++ + D
Sbjct: 430 IALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKV--- 486
Query: 504 SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK---- 559
V GD + +Q++ NLV NS+KFT GHI V+ + ++S I S +V
Sbjct: 487 PEIVMGDPGRFRQVITNLVGNSVKFTEHGHIFVKVQLAEQSMVSTNIKSETHVNGNSEDG 546
Query: 560 -CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFE----------------------VDD 596
+K F GF+ D +S + +L EF+ V+D
Sbjct: 547 ASHNKHQFETLSGFEAADNQNSWDTFKHLANEEFQPNGSSNLMATNEISDIVTVMISVED 606
Query: 597 TGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERG 656
TG GIP Q +F F+Q + + G G+GL I + +V LM G+I K + G
Sbjct: 607 TGIGIPLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQINFVSKP--QVG 664
Query: 657 VCFRFNVLLTAVCERE 672
F F + CE++
Sbjct: 665 STFSFTAVF-GRCEKK 679
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 31/149 (20%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP-- 1017
L GKK LVV+D+ + +V + L K GA E +GK A L+ L+ LP
Sbjct: 856 LCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGKAA-------LALLQ-----LPHS 903
Query: 1018 YDYIMMDCEMPVMNGWEATRLIR----KEEE-------------QYDVHIPIIALTAHAM 1060
+D MD +MP M+G+EATR IR KE E + + H+PI+A+TA +
Sbjct: 904 FDACFMDIQMPEMDGFEATRRIRMMESKENEVLIRESNGKENARKDEWHVPILAMTADVI 963
Query: 1061 AGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ + GMD +++KP +++ L V
Sbjct: 964 HATYDECLKCGMDGYVSKPFEEENLYQAV 992
>gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum
seropedicae SmR1]
gi|300074733|gb|ADJ64132.1| sensor histidine kinase/response regulator protein [Herbaspirillum
seropedicae SmR1]
Length = 1145
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 137/299 (45%), Gaps = 51/299 (17%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A E AE ++ K+ +A SH++R L +I+G ++ H DA + +G+IR +
Sbjct: 676 RAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPARKDAIGVIRRSGE 735
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL +++ +++++KIEAGKM L +E L LE++V M+ +KG+ D G +
Sbjct: 736 HLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLHFRFDK-SGRL 794
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
H D+ +L+QIL NL+ N++KFT G +++R ++ IA
Sbjct: 795 PQIVH--ADQKRLRQILINLLGNAVKFTDHGGVTLRLRYARE------IAY--------- 837
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
F+V DTG GI D + IF F + L
Sbjct: 838 ------------------------------FDVIDTGIGIADDDRERIFLPFERSSAANL 867
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
G GLGL I + +VH+M GE+++ + +G F + L V RP ED
Sbjct: 868 REDIGTGLGLAISRMLVHIMGGELSVQSQV--GQGSSFHLKIYLPEV-HVPRPRIKLED 923
Score = 39.7 bits (91), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+ LVV+D A ++ +L LG +G L+ + G ALP D ++
Sbjct: 933 RHILVVDDQASQRRLLKDMLMPLGFTVSEADSG----------LACMETLGHALP-DLVL 981
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D MP M+GW R IR +PI+ ++A+A + + ++ + KP+
Sbjct: 982 LDIAMPQMDGWSVARAIRARGL---AQLPILLVSANAFENLHERNEPPLVNDFVVKPVSY 1038
Query: 1083 DKLLDVVK 1090
+LL ++
Sbjct: 1039 HELLGKIR 1046
>gi|374621477|ref|ZP_09694009.1| multi-sensor hybrid histidine kinase [Ectothiorhodospira sp. PHS-1]
gi|373940610|gb|EHQ51155.1| multi-sensor hybrid histidine kinase [Ectothiorhodospira sp. PHS-1]
Length = 1905
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 138/292 (47%), Gaps = 56/292 (19%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----L 433
IKQ A E AER + K+ LA SH++R + A+IGL EL + T L+E L
Sbjct: 1164 IKQ--AQETAERANQAKSQFLANMSHEIRTPMNAVIGLSELLLD-----TPLSEKQRDYL 1216
Query: 434 GLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV 493
G IR S+ LLGI+N +++ SKIEA K+EL F + LLE++ ++ V G+++V
Sbjct: 1217 GKIRDSSRMLLGIINDILDFSKIEADKLELERHGFRIEDLLEQMRTLFASVADNAGIELV 1276
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
+ + V GD ++L QIL NL+SN++KFT +G +
Sbjct: 1277 F---ELEIREPVTVEGDALRLGQILTNLLSNAIKFTEQGQVV------------------ 1315
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
L R DD LH F+V DTG GI ++Q+ +F+ F
Sbjct: 1316 ----------LSIRQLGCTDDHLRLH------------FQVSDTGIGITAEQQSRLFQPF 1353
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
Q + G GLGL I + ++ M ++ + + + G F F + L
Sbjct: 1354 SQADTSTTRKYGGTGLGLVICRKLLEKMGADLKL--ESIPDTGSTFHFELTL 1403
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 15/131 (11%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
G+ L+VED+A+ +V +L K G + + +G+EA V + P D
Sbjct: 1568 FEGRTVLLVEDNALNQEVARGILNKTGIRVLLANDGREALAQVTQY-----------PVD 1616
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MPVM+G+EA +R++ +PIIAL+A M + AGM+ HL KP
Sbjct: 1617 LVLMDLQMPVMDGFEAASRMRQQFPD----LPIIALSAAVMEDDRHRARAAGMNDHLAKP 1672
Query: 1080 LQKDKLLDVVK 1090
+ LL ++
Sbjct: 1673 IDSRALLSTME 1683
>gi|325106120|ref|YP_004275774.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
gi|324974968|gb|ADY53952.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
Length = 829
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 165/343 (48%), Gaps = 57/343 (16%)
Query: 309 CSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAK 368
+TL+ +++V + ++ S+V+ K +++++ F+ +I L L + I+K +
Sbjct: 274 LTTLRQVELEAVNQIQERNDDAKSVVNSGIKQISVIILVFFLITLIMLYLILRDISKGNE 333
Query: 369 REMFLCAALIKQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGT 427
KQ+ A E+AE SM K LA SH++R L IIG EL ++
Sbjct: 334 YR--------KQLEKAKEEAEYHSMAKQRFLANMSHEIRTPLQTIIGFSELLRKEREIK- 384
Query: 428 DLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIK 487
+N+ I S+ L+ I+N +++ ++I +GK+ + F++ LL+EV + + K
Sbjct: 385 --PKNIDAIYYSSEHLMHIVNEILDYNRIVSGKIAITPTVFHMENLLQEVFTVLKYQAEK 442
Query: 488 KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
KG+ + D +V+GD +LKQIL NL+ N++K+T +GH+++ + KK
Sbjct: 443 KGIKLY---ADFDFEDVSYVKGDAFRLKQILYNLLGNAIKYTDKGHVALNVSCKK----- 494
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
NK G L F F ++DTG G+ +
Sbjct: 495 --------------------NKSG----------------LHFMFVIEDTGVGMSHEDTQ 518
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
+IF EF ++ + + +EG GLGL I + ++ +G I++ K
Sbjct: 519 NIFNEFERI-DKIVSDKEGAGLGLSITKLLIEQQEGRISVRSK 560
>gi|393770522|ref|ZP_10359010.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
gi|392724066|gb|EIZ81443.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
Length = 887
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 144/307 (46%), Gaps = 53/307 (17%)
Query: 359 FIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGL--V 416
++ + A +RE F A +K+ A + AE S K+ LA SH++R L+A+IG +
Sbjct: 354 WVGIHADITEREAFEIA--LKE--ARDAAEEHSRAKSRFLANMSHELRTPLSAVIGYSEM 409
Query: 417 ELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEE 476
+ L ++LG I++ ++ LLG++N V+++SK+EA KMEL E+ ++A +
Sbjct: 410 LEEEAEELGQESLLKDLGKIKSNAQHLLGLINDVLDLSKVEAEKMELDLEDIDVAAFTRD 469
Query: 477 VVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISV 536
+ KKG +VLD D + R D VKL+Q L NL+SN+ KFT G I++
Sbjct: 470 AAGTVEALVRKKGNVLVLDIAD----DAGRARTDAVKLRQCLFNLLSNAAKFTEGGTITL 525
Query: 537 RAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDD 596
RA R+ +G D F V+D
Sbjct: 526 RAR---------------------------RDTDGAGDW--------------LRFTVED 544
Query: 597 TGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERG 656
TG G+ ++ +FE F Q ET G GLGL + ++ L+ G+I + + +G
Sbjct: 545 TGIGMSTEQVGRLFERFTQADETTTRRFGGTGLGLALSRAFAQLLGGDITVVSR--AGQG 602
Query: 657 VCFRFNV 663
CF V
Sbjct: 603 TCFTLRV 609
>gi|222086817|ref|YP_002545351.1| two-component sensor histidine kinase [Agrobacterium radiobacter
K84]
gi|221724265|gb|ACM27421.1| two-component sensor histidine kinase protein [Agrobacterium
radiobacter K84]
Length = 1129
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 138/298 (46%), Gaps = 50/298 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
+A E AE + K+ + SH++R L A++G ++ D +L +IR ++
Sbjct: 665 SAKEAAEAANRAKSRYVVGLSHELRTPLNAVLGYAQILERDETIPAPRQSSLKVIRRSAE 724
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
L G+++ ++++SKIEAG++++ E N+ L+++VDM+ KG+ V +P
Sbjct: 725 HLSGLIDGLLDISKIEAGRLQVYSNEINIKDFLDQIVDMFRPQAQAKGLAFVYEPTAAL- 783
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+VR D +L+QIL NL+SN++KFT G + + + I + R + K L
Sbjct: 784 --PDYVRTDEKRLRQILVNLLSNAIKFTDTGSVRFEVGYRSQVATFTIADTGRGIAEKDL 841
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
++ I+E F + + ++
Sbjct: 842 TR---------------------------------------------IYEPFQRGEAESI 856
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEE 679
GLGLGL I Q + + + GEIA+ ++ ++G F+ ++L+AV +P E+
Sbjct: 857 RPMPGLGLGLTITQLLTNTLGGEIAVVSEK--DKGSTFKVRLMLSAVLRPMKPPAQEQ 912
>gi|427416794|ref|ZP_18906977.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
gi|425759507|gb|EKV00360.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
Length = 683
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 143/302 (47%), Gaps = 51/302 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGT--DLAENLGLIRTC 439
+A E AE + K+ LA SH++R L AIIG E+ E+A + D +L I+
Sbjct: 311 HAKESAEASTQAKSEFLANMSHELRTPLNAIIGYSEMLAEEAEDLSVEDAQTDLYRIQDA 370
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
K LL ++NSV+++SKIE+G+MEL EEF+++ L+E+V D+ + KKG +++
Sbjct: 371 GKQLLTLINSVLDLSKIESGRMELFIEEFSISFLVEQVADVLNPLIQKKGNKLIVHQGAN 430
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
L + D K+ Q L NL+SN+ KFT +G I++ K S + D
Sbjct: 431 VDL----ISADHSKVHQSLLNLLSNANKFTQDGTIALTV---KSSMEGD----------- 472
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
P + +F V DTG G+ ++Q +FE F Q +
Sbjct: 473 ------------------------QPWI---DFIVTDTGIGMTSEQQKKVFEAFAQADSS 505
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEE 679
G GLGL I + +M G+I + + +RG +F + L V + R EE
Sbjct: 506 TTRQFGGTGLGLTITKQFASMMGGDITVESQ--SDRGS--QFTLRLPQVVQGNRQPIQEE 561
Query: 680 DP 681
P
Sbjct: 562 QP 563
>gi|355682991|ref|ZP_09062765.1| hypothetical protein HMPREF9469_05802 [Clostridium citroniae
WAL-17108]
gi|354810716|gb|EHE95355.1| hypothetical protein HMPREF9469_05802 [Clostridium citroniae
WAL-17108]
Length = 685
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 161/346 (46%), Gaps = 74/346 (21%)
Query: 342 LMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKA 401
L+ LV++F+A ++ L +++I + Q + EQA+ ++ N L K
Sbjct: 275 LITLVVLFLAALV-LSALVLMIKR-------------NQAVSLEQAKARAKNDF--LDKM 318
Query: 402 SHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKM 461
SHD+R L AIIG+ EL + + + L + S+ L+ ++N V++MSKIE+GKM
Sbjct: 319 SHDIRTPLNAIIGMHELALGSPDDPGLVTDCLKKAKMSSEYLVSVINDVLDMSKIESGKM 378
Query: 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD---PCDGSVLGSCHVRGDRVKLKQIL 518
+ +FN+ +LL+ V+ M + +K + + LD P D + GD ++++Q L
Sbjct: 379 TVSNRQFNMEELLDHVMQMEENPAREKRLSLFLDLESPIDTDFI------GDPLRIRQCL 432
Query: 519 CNLVSNSMKFTSEG---HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDL 575
NLVSNS+KFT E H+S R +++ CL +
Sbjct: 433 INLVSNSIKFTPESGEIHLSYRVEPIDETY--------------CLGR------------ 466
Query: 576 DALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQ 635
F+V DTG G+ +D IF F Q + G GLGL IV
Sbjct: 467 ----------------FKVRDTGIGMSEDFLERIFTPFEQEYSSLTSSYVGSGLGLSIVN 510
Query: 636 SMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER--ERPDTDEE 679
S+V LM G I + + + G G CF ++ L + RP DEE
Sbjct: 511 SLVSLMNGTIFV-ESDLGH-GSCFTISLPLPMAPKSAASRPVMDEE 554
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L ++ LV ED+ I ++ S +L KLG + NG++ + + D Y
Sbjct: 560 LKDRRVLVAEDNDINREIISLMLEKLGLAVDTAVNGRDVLNKFTQSSPD--------SYS 611
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MD +MPVM+G EA R IR D IPI+AL+A+A + +DAGM HL KP
Sbjct: 612 MILMDIQMPVMDGLEAARQIRASARP-DRRIPIVALSANAFDEDTQRSLDAGMQAHLAKP 670
Query: 1080 LQKDKLLDVVK 1090
+ +L ++K
Sbjct: 671 VDIIELKRILK 681
>gi|356499485|ref|XP_003518570.1| PREDICTED: histidine kinase 2-like [Glycine max]
Length = 1282
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 163/334 (48%), Gaps = 41/334 (12%)
Query: 355 SLGLFIIL-----IAKAAKREMFLCAALIKQMNATE-QAERKSMNKTFALAKASHDVRAS 408
S+G+F+I I AA + A +QM + +AE + K+ LA SH++R
Sbjct: 643 SVGVFVITLLLGHIFYAAINRIAKVEADYRQMRELKVRAEAADVAKSQFLATVSHEIRTP 702
Query: 409 LAAIIGLVELCHEDANPGTDLAEN-LGLIRTC---SKDLLGILNSVMEMSKIEAGKMELV 464
+ ++G++++ + T+L EN + +T KDL+ +++ V++ +KIEAGK+EL
Sbjct: 703 MNGVLGMLQMLMD-----TELDENQMDCAQTAHKSGKDLISVISEVLDQAKIEAGKLELE 757
Query: 465 EEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVR----GDRVKLKQILCN 520
F+ +L+EV+ ++ +KG+++ +V S V GD + +QI+ N
Sbjct: 758 AVAFDPRAILDEVLSLFSEKSNEKGIEL-------AVYASNQVPKVVIGDPKRFRQIITN 810
Query: 521 LVSNSMKFTSE-GHISVR----AAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDL 575
LV NS+KFT + GH+ V + VK D + +S+ ++ + GF
Sbjct: 811 LVGNSLKFTHDKGHVFVSVHLASEVKNPLHIMDAVLREGLNLSQDITNRTYDTLSGFPVC 870
Query: 576 DALHSV--------ERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGL 627
+ S P ++Q V+DTG GIP D Q+ IF F+Q + G
Sbjct: 871 NRWKSWANFTKLSGTNEPEIIQLLVIVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGT 930
Query: 628 GLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
G+GL I + +V LM GEI EPG G F F
Sbjct: 931 GIGLSISRCLVDLMGGEIGFVS-EPG-IGSTFSF 962
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 32/143 (22%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP--YDY 1020
K+ LVV+D+A+ +V VL K GAK +G+ A K+L LP +D
Sbjct: 1140 KQILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAAL----KMLE--------LPHNFDA 1187
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHIPIIALTAHAMAG 1062
MD +MP M+G+EATR IR E + + HIPI+A+TA +
Sbjct: 1188 CFMDLQMPEMDGFEATRKIRCLESEVNEKIACGQASAEMFGNISYWHIPILAMTADSTQS 1247
Query: 1063 VASKIVDAGMDFHLTKPLQKDKL 1085
+ + GM+ +++KP ++++L
Sbjct: 1248 SNEECIKCGMNDYVSKPFEEEQL 1270
>gi|262275269|ref|ZP_06053079.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
gi|262220514|gb|EEY71829.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
Length = 725
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 138/286 (48%), Gaps = 54/286 (18%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIR 437
+A QAE+ + K+ LA SH++R + IIG+ L GT L E + ++
Sbjct: 185 SAKMQAEQANQKKSEFLANMSHEIRTPMNGIIGMASLLK-----GTPLDEEQREFIEMLE 239
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
T S LL I+N +++ SKIEAGK+EL E NL +L +++ ++ +KG++ C
Sbjct: 240 TSSLSLLDIINDILDFSKIEAGKLELDSVELNLFELCKDIEHLFRLRTKEKGLEF---EC 296
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+ + GD +L+Q++ NLV N++KFT G +SV S +Q A + +
Sbjct: 297 GLDQNLTPLLVGDAPRLRQVMINLVGNAVKFTQSGKVSV-------SIRQVAEAGDNITV 349
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+ FEV+DTG GIP DK ++FE+F Q
Sbjct: 350 T---------------------------------FEVEDTGIGIPADKLKTVFEKFEQAD 376
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ + G GLGL I +V LM GEI + +E GE G F F V
Sbjct: 377 GSMSRNFGGTGLGLAISSQIVELMGGEIEVESRE-GE-GSRFFFTV 420
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 120/242 (49%), Gaps = 42/242 (17%)
Query: 876 SRPFHGSRLIEVLKLLPECKGAS-----QRNF----PKLKMEASSQELQ----------- 915
++PF +L+ + KL+P G S ++ F P L M ++ E+
Sbjct: 487 AKPF---KLVILDKLMPNSDGFSIASRLRKRFGKRCPSLMMITAAPEVHDNVKLESLNIE 543
Query: 916 -HCTDPNPLNKLKSFGAE--AGASISSHCSSLQQVAAQSDGKCSEKPLNGK---KFLVVE 969
+ + P N L++ A G S+ A D K + P +G + LVVE
Sbjct: 544 GYLSRPYKFNDLRNHLARILRGQQAQLGVVSMSAHKADQDAKTANPPESGTYQGRVLVVE 603
Query: 970 DDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV 1029
D + +VT A+L +LG V NG+ A D+ CK D+ +D I MDC+MPV
Sbjct: 604 DTLVNQRVTQAMLVRLGVDVVVAENGQVAIDY-CK--HDI--------FDLIFMDCQMPV 652
Query: 1030 MNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
M+G++A RL+R E Y H PI+ALTA+A A + +GMD ++ KP++K +L ++
Sbjct: 653 MDGYQAARLLR--EHGYAPHTPIVALTANATAQDRENCLKSGMDDYIAKPVRKAELERMI 710
Query: 1090 KS 1091
K+
Sbjct: 711 KN 712
>gi|116109372|gb|ABJ74170.1| histidine kinase 1 [Lupinus albus]
Length = 1043
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 148/292 (50%), Gaps = 19/292 (6%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
++AE + K+ LA SH++R + ++G++ + D + E + + K L+
Sbjct: 450 KRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLM-DTDLDVTQQEFVRTAQVSGKALM 508
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV---VLDPCDGSV 501
++N V++ +KIEAGK+EL F+L +L++V+ ++ +KGV++ V D +
Sbjct: 509 SLINEVLDQAKIEAGKLELEAVLFDLRAILDDVLSLFSEKSQEKGVELGVYVSDQVPELL 568
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKK---SFKQDIIASNRNVIS 558
+G D + +QI NL+ NS+KFT +GH+ V + ++ S K D +++ N +S
Sbjct: 569 IG------DPGRFRQITTNLMGNSIKFTDKGHVFVTVHLVEEVVYSTKVDKESTSENTLS 622
Query: 559 KCLSKLFFRNKEGFDDLD---ALHSVERNP-NLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
R+ EGF L S + +L+ V+DTG+GIP + Q IF F+
Sbjct: 623 GFPVADSRRSWEGFKAFSQEGPLGSFSSSSGDLINLIVSVEDTGEGIPLEAQPHIFTPFM 682
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
QV + G G+GL I + +VHLM GEI + G F F + T
Sbjct: 683 QVGPSISRKHGGTGIGLSISKCLVHLMSGEIGFVSIP--KIGSTFTFTAIFT 732
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 23/139 (16%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G++ L+V+D+++ V +A L K GA+ +GKEA +S L+ + +D
Sbjct: 904 LRGRRILIVDDNSVNRMVAAAALKKYGAEVVCVSSGKEA-------ISSLKPPHQ---FD 953
Query: 1020 YIMMDCEMPVMNGWEATRLIR-------KEEEQYDV------HIPIIALTAHAMAGVASK 1066
MD +MP ++G+EATR IR E YD+ H+PI+ +TA +
Sbjct: 954 ACFMDIQMPEIDGFEATRTIRDMELSVNSEMSVYDIDNVSNWHVPILTMTADVIQATQEA 1013
Query: 1067 IVDAGMDFHLTKPLQKDKL 1085
+ GMD +++KP + ++L
Sbjct: 1014 CLRCGMDGYVSKPFEAEQL 1032
>gi|104782773|ref|YP_609271.1| two-component sensor/response regulator protein [Pseudomonas
entomophila L48]
gi|95111760|emb|CAK16484.1| putative two-component sensor/response regulator protein
[Pseudomonas entomophila L48]
Length = 1210
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 148/307 (48%), Gaps = 50/307 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A +QA+ + K+ LA SH++R + A+IG++EL A+ G L + ++D
Sbjct: 702 AKQQADDANRAKSTFLATISHEIRTPMNALIGMLELALRRADQGQLDRPALEIAHHSAQD 761
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LLG++ ++++++IE+G + L E +LA L+E V ++ + KG+ + + D +
Sbjct: 762 LLGLIGDILDIARIESGHLTLAPEPVDLAMLVESVGRVFDGLARHKGLALKVAITDAA-- 819
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
CHV D ++ KQ+L NLVSN++KFT +G VR +VK
Sbjct: 820 -HCHVMLDPLRFKQVLSNLVSNAIKFTEQGQ--VRISVK--------------------- 855
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
RN ER +L + EV D+G GI ++ +F F Q + G
Sbjct: 856 ---LRNGN-----------EREAPIL--DLEVRDSGIGIHEEDVQRLFTPFAQANPYSDG 899
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPR 682
+ G GLGL I +++ +M GE+++ + GV R +++ C D +E PR
Sbjct: 900 ARAGTGLGLVISRNLCTMMGGELSLQSLQ----GVGTRVRLVMPLRCV----DPEEPLPR 951
Query: 683 THNDWPQ 689
D Q
Sbjct: 952 MAADIEQ 958
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
E+P K LV++D L + + L LG + E R+G+E LRK +
Sbjct: 957 EQPDTRMKILVIDDHPANLLLMAQQLSYLGLRQESARDGREG----------LRKWREGC 1006
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYD-VHIPIIALTAHAMAGVASKIVDAGMDFH 1075
+D +++DC MP MNG+E R +R EE + ++ TA+A V + +DAGMD
Sbjct: 1007 -FDVLIVDCNMPGMNGYELARTVRAEEHLHGRPRCTMLGYTANAQPEVRQQCLDAGMDDC 1065
Query: 1076 LTKPL 1080
L KP+
Sbjct: 1066 LLKPI 1070
>gi|20091183|ref|NP_617258.1| sensory transduction histidine kinase [Methanosarcina acetivorans
C2A]
gi|19916292|gb|AAM05738.1| sensory transduction histidine kinase [Methanosarcina acetivorans
C2A]
Length = 725
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 132/277 (47%), Gaps = 51/277 (18%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN--LGLI 436
K + A AE + +K+ L+ SH++R L A+IG ++ +E+ + + +G I
Sbjct: 481 KMLQAKILAENSNRSKSEFLSNMSHELRTPLNAVIGFADILNEEGFGPLNKKQKRFVGNI 540
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
T K LL ++N ++++SKIEAGKME EF++ + +E+ D+ + V KK + + +
Sbjct: 541 STSGKHLLKLINEILDLSKIEAGKMEFKCTEFSVKEKFDEIKDILFPVFSKKKIRIEFEI 600
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
D G + D K Q+L NLVSN++KFT EG
Sbjct: 601 GD----GITTIYSDEGKFVQVLYNLVSNAIKFTEEG------------------------ 632
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
GF + A +N ++LQ V DTG GI ++ IF FVQV
Sbjct: 633 --------------GFVKVSA----RKNGDMLQ--LSVKDTGIGITEEDLMKIFHPFVQV 672
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
+ EG GLGL +V MV LM GEI + +PG
Sbjct: 673 DSFSTRQYEGTGLGLALVDQMVQLMGGEICVF-SQPG 708
>gi|386288857|ref|ZP_10065997.1| PAS/PAC sensor hybrid histidine kinase [gamma proteobacterium
BDW918]
gi|385278412|gb|EIF42384.1| PAS/PAC sensor hybrid histidine kinase [gamma proteobacterium
BDW918]
Length = 1019
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 142/295 (48%), Gaps = 53/295 (17%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+NA AE K+ L+ SH++R L ++G +L DA + E L I +C
Sbjct: 543 VNARIAAEDALHAKSQFLSSVSHELRTPLNGVLGYAQLLQRDAGVPSGSQEYLRAIESCG 602
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL ++N V++++KIE+G +++V +L++++ V D+ H KG+D V++
Sbjct: 603 KHLLTLINDVLDLAKIESGNIDIVHRANDLSEIVSSVSDIVGHRAKSKGLDFVVNVA--- 659
Query: 501 VLGSCH-VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
H V+ D VKL+Q+L NL+ N++KFT++G + ++ V
Sbjct: 660 -ADVPHIVQADEVKLRQVLVNLLDNAVKFTAKGRVELKLDV------------------- 699
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
DLD R+ L F V D+G GIP +K +FE F QV
Sbjct: 700 --------------DLD------RHILL----FSVRDSGMGIPDEKLRDVFEPFRQVNPQ 735
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
+G GLGL I + +V M G + ++ E G +G CF F++ L V + P
Sbjct: 736 ---DGKGTGLGLAICRRLVEAMGGNLNLS-SEFG-KGSCFYFDIPLLDVPKASEP 785
Score = 46.6 bits (109), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
++MD MP M+G EATR+I++E + V II +A + ++ V+ G D L KP+
Sbjct: 854 VLMDLRMPEMDGMEATRIIKQELKMTGVS--IIMASATTDEDMMAEAVEVGCDGFLPKPI 911
Query: 1081 QKDKLLDVVKS 1091
D LL VV S
Sbjct: 912 GIDDLLKVVAS 922
>gi|374586160|ref|ZP_09659252.1| multi-sensor hybrid histidine kinase [Leptonema illini DSM 21528]
gi|373875021|gb|EHQ07015.1| multi-sensor hybrid histidine kinase [Leptonema illini DSM 21528]
Length = 1168
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 135/287 (47%), Gaps = 49/287 (17%)
Query: 377 LIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLI 436
L++ A E+A R K+ LA SH++R + +I+G L +I
Sbjct: 769 LLRARTAAEEANRA---KSRFLAHMSHEIRTPMNSILGFASLLLGTDLDDDQ-KRYTAII 824
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
+ LL ++N ++++S+IEAGK+EL + F+L L++E + +KGV V++D
Sbjct: 825 EQSGEALLSLINDILDLSRIEAGKLELSDSPFDLPSLIKETTGLLTLKAGEKGVRVMVD- 883
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
D V GD ++L+Q+L NL+SN++KFT +G I VR + +++ + I+
Sbjct: 884 IDSHV--PAIASGDALRLRQVLLNLLSNAVKFTEKGTIEVRVRLIRETETESIV------ 935
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
FEV+DTG GIP++ + +F+ F Q
Sbjct: 936 ----------------------------------RFEVEDTGIGIPEEALSRLFQPFTQA 961
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ G GLGL I + +VH M G I + K GE G F F +
Sbjct: 962 DSSTTRRFGGTGLGLAISRELVHRMHGTIGASSKV-GE-GSTFWFEL 1006
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 930 GAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKF 989
G + +++ + AA+ +C PL+ L+ ED + +L K G
Sbjct: 1017 GDSSSETLTGASERISSTAAEDLVECG--PLH---ILLAEDSPENQLLAILLLKKKGCTV 1071
Query: 990 EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVH 1049
+ NG EA + LR E +D ++MD +MP M+G+EAT IR E
Sbjct: 1072 DTAANGAEAIEK-------LRTEK----FDLVLMDIQMPQMDGFEATARIRSGEVPV-AD 1119
Query: 1050 IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
IPIIA+TA AM+G + + GM+ ++ KPL+ +L VV
Sbjct: 1120 IPIIAMTAQAMSGDRERCLATGMNDYVAKPLRAAELYTVV 1159
>gi|426405316|ref|YP_007024287.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
str. Tiberius]
gi|425861984|gb|AFY03020.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
str. Tiberius]
Length = 734
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 145/297 (48%), Gaps = 49/297 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
++A +A + S K+ LA SH++R + I+G+ E+ D NP + + + + +IR +
Sbjct: 220 VHARNEALQASQMKSSFLANMSHEIRTPMNGILGMTEVLL-DQNPESGIKKKIQIIRESA 278
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+LL ++N ++++SKIE+GK+EL E F +L++EV++ + KG+++ + +
Sbjct: 279 LNLLSLINGILDLSKIESGKLELEESYFEPRKLIQEVINTVDYSAKSKGLELHASVSEQT 338
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
GD ++L+QIL NL+ N++KF+SEG +S+
Sbjct: 339 ---PAAFSGDVLRLRQILINLLGNAIKFSSEGTVSL------------------------ 371
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
AL+S + + + +V D G G+ + IF F Q ++
Sbjct: 372 ----------------ALNSFRSDQSRTMLQIQVKDQGLGMDEATLAKIFSPFEQADKST 415
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV---CERERP 674
G GLGL I + +V LM G+I + + PGE G F + L A+ E +RP
Sbjct: 416 TRKFGGTGLGLSITKQLVELMNGKIEVESR-PGE-GSTFWVTLPLEAINVMPENQRP 470
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 14/125 (11%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
SE PL K LV ED+ +V +L +LG KF++ NGKEA + A
Sbjct: 479 SEAPL---KILVAEDNMTNQEVVKVMLNRLGHKFDIVNNGKEALEKTI-----------A 524
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075
YD I+MDC MPVM+G+EA + I + Q+ +IA+TA+A+ G + AGM +
Sbjct: 525 TTYDIILMDCHMPVMDGYEAAQKITERFPQWCQGPAVIAVTANAIRGDKEACLAAGMCDY 584
Query: 1076 LTKPL 1080
L+KPL
Sbjct: 585 LSKPL 589
>gi|193084072|gb|ACF09742.1| integral membrane sensor signal transduction histidine kinase
[uncultured marine group III euryarchaeote AD1000-40-D7]
Length = 752
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 144/293 (49%), Gaps = 54/293 (18%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP-GTD-LAENLGLIRTCS 440
A ++A+ + K+ LA SH++R L AIIG E+ E+A+ G D +E+L I +
Sbjct: 512 AMQKAQTANQAKSDFLANMSHELRTPLNAIIGYSEMLIEEADDDGLDTYSEDLSKINSSG 571
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL ++N ++++SKIEAGKM+L EEF+ A+LL+++ + ++K + + C
Sbjct: 572 EHLLTLINDILDLSKIEAGKMDLHIEEFDFAELLKQIEATAKPL-VEKNKNKFIIKCQTK 630
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
L ++ D+ KL+QIL N++SN+ KFT EG ++++ +KK+
Sbjct: 631 KL---KLKNDQTKLRQILFNMLSNAAKFTKEGMVTLQINPEKKN---------------- 671
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+FEV DTG G+ + +FEEF Q K +
Sbjct: 672 ----------------------------HLKFEVLDTGIGMNGKQLEKVFEEFTQAKSST 703
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL I + M +M G + + KE G F++++ E +R
Sbjct: 704 SKDYGGTGLGLPISKKMTEMMGGRMGVESKE----GKGTTFSIIIPINVEDKR 752
>gi|456888406|gb|EMF99389.1| GHKL domain protein [Leptospira borgpetersenii str. 200701203]
Length = 400
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 141/292 (48%), Gaps = 46/292 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 2 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYIQILSISA 60
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L +E F++ +L+E+ D+ Y + +K + + L+ D S
Sbjct: 61 KSLLQIINDILDFSKIEAGKISLDKEVFSIHSVLDEIHDLLYPLAKQKRIGLRLE--DKS 118
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V GD+++L+QIL NL N +KFT+ G + + NV K
Sbjct: 119 EIQE-YVYGDQLRLRQILWNLTGNGIKFTNHGEVVL------------------NVSQKN 159
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+SK + + +F V D+G GIP +KQ +F+ F Q +
Sbjct: 160 ISK----------------------DKISIKFTVSDSGIGIPLEKQKQVFDAFSQSDTST 197
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
G GLGL I + +V L G + + KE G F F + E E
Sbjct: 198 ARKFGGSGLGLSITKQLVELQGGTLNLESKES--YGSKFTFTITYDIPSESE 247
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K LV ED+ + L KLG V NG+E + K+ D +D I+M
Sbjct: 273 KILVAEDNETNCLLIERALKKLGYDPVVVHNGREVIE---KMQLDF--------FDMILM 321
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D MP ++G EAT+ IR +++ + I IIALTA + + GM+ +LTKPL
Sbjct: 322 DIHMPEVDGIEATKWIRSQKQNTEFPI-IIALTADVIESNKEVYISKGMNDYLTKPL 377
>gi|398340376|ref|ZP_10525079.1| histidine kinase response regulator hybrid protein [Leptospira
kirschneri serovar Bim str. 1051]
Length = 804
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 44/293 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 406 IQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 464
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ + + +K +D L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLFPLAKQKEIDFRL---EGK 521
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+V GD ++L+QIL NL N +KFT+ G + ++ A K S
Sbjct: 522 SEIQEYVYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKNIS---------------- 565
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
K+G + EF V D+G GIP +KQ +FE F Q +
Sbjct: 566 --------KDG----------------VSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 601
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL I + ++ L G + + +E F + + ++ E E+
Sbjct: 602 ARKFGGSGLGLSITKQLIELQGGVLKLESQEGEGSKFTFTIDYDIPSILEIEK 654
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 91/216 (42%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 598 DTSTARKFGGSGLGLSITKQLIELQGGV------LKLESQEGEGSKFTFTIDYDIPSILE 651
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V ++S + LV ED+ + L K
Sbjct: 652 IEKILEAEKTKDLEK---SFQDVVSKS-----------TRILVAEDNETNCLLIERALKK 697
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + + + +D I+MD MP ++G EAT+ IR + +
Sbjct: 698 LGYDPTVVHNGREVIERM-----------QLETFDIILMDIHMPEVDGIEATKWIRSKNQ 746
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I IIALTA A+ K + GM+ LTKPL
Sbjct: 747 NSKFPI-IIALTADAIESSREKYISKGMNDCLTKPL 781
>gi|149190709|ref|ZP_01868976.1| Signal transduction histidine kinase [Vibrio shilonii AK1]
gi|148835475|gb|EDL52445.1| Signal transduction histidine kinase [Vibrio shilonii AK1]
Length = 832
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 131/273 (47%), Gaps = 56/273 (20%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD----LLGILNSVMEM 453
L+ SH++R + +IG+ L + T L E + +K+ LL I+N +++
Sbjct: 306 LSTMSHEIRTPMNGVIGMTNLLLD-----TKLDEQQIRMTETTKNSAESLLSIINDILDF 360
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS-VLGSCHVRGDRV 512
SKIEAGK++L +F+L +++E+V M Y +KG+ +V C + V+ C+ RGD
Sbjct: 361 SKIEAGKIDLELIDFDLGEVVEDVGAMLYFAAEQKGIQLV---CPATPVMDLCY-RGDPG 416
Query: 513 KLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGF 572
+++Q+L NLVSN++KFT +G ++V V +K I+
Sbjct: 417 RIRQVLNNLVSNAIKFTEDGEVAVYVTVDEKRLTDSIL---------------------- 454
Query: 573 DDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632
FE+ DTG GI +++Q +F F Q + G GLGL
Sbjct: 455 ------------------RFEIRDTGIGISEEQQQKLFSRFSQADSSTTRKYGGTGLGLS 496
Query: 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
I + + +M GEI + E G +G F F V L
Sbjct: 497 ISKRLTEIMGGEIGVT-SETG-KGSTFWFTVCL 527
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 18/136 (13%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D V ++L K G K + +NG EA L+ LR YD + M
Sbjct: 694 RILIVDDVTTNQVVLQSLLSKFGIKVDKAKNGLEA-------LAALRTPAN---YDLVYM 743
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
DC+MP M+G+EATR IR H IP++A+TA+A+ G K ++AGMD +++KP+
Sbjct: 744 DCQMPEMDGYEATREIRNTRNININHSIPVVAMTANALQGDREKCLEAGMDDYISKPIN- 802
Query: 1083 DKLLDVVKSIDETMEK 1098
K++ E++E+
Sbjct: 803 ------AKALGESLER 812
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L ++ LVV+D+ + + + ++V +G+EA ++L+D K+ + +
Sbjct: 543 LKKQRILVVDDNDTNCNLLEQIFTRWEIPYQVANSGEEAL----RVLADNHKQQQF--FT 596
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++D +MP M+G E + I+ + D + + ++ G A K+ AG +LTKP
Sbjct: 597 IAILDYQMPNMDGVELAKQIQDNPDYNDTRL--VMFSSVVQRGDAKKMQKAGFSGYLTKP 654
Query: 1080 LQKDKLLDVVKSI 1092
+Q+ LL V++ +
Sbjct: 655 MQQADLLSVLEKV 667
>gi|418741078|ref|ZP_13297454.1| 7TM diverse intracellular signaling [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|410751673|gb|EKR08650.1| 7TM diverse intracellular signaling [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 820
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 44/293 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 422 IQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 480
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ + + +K +D L +G
Sbjct: 481 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLFPLAKQKEIDFRL---EGK 537
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+V GD ++L+QIL NL N +KFT+ G + ++ A K S
Sbjct: 538 SEIQEYVYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKNIS---------------- 581
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
K+G + EF V D+G GIP +KQ +FE F Q +
Sbjct: 582 --------KDG----------------VSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 617
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL I + ++ L G + + +E F + + ++ E E+
Sbjct: 618 ARKFGGSGLGLSITKQLIELQGGVLKLESQEGEGSKFTFTIDYDIPSILEIEK 670
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 91/216 (42%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 614 DTSTARKFGGSGLGLSITKQLIELQGGV------LKLESQEGEGSKFTFTIDYDIPSILE 667
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V ++S + LV ED+ + L K
Sbjct: 668 IEKILEAEKTKDLEK---SFQDVVSKS-----------TRILVAEDNETNCLLIERALKK 713
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + + + +D I+MD MP ++G EAT+ IR + +
Sbjct: 714 LGYDPTVVHNGREVIERM-----------QLETFDIILMDIHMPEVDGIEATKWIRSKNQ 762
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I IIALTA A+ K + GM+ LTKPL
Sbjct: 763 NSKFPI-IIALTADAIESSREKYISKGMNDCLTKPL 797
>gi|389623389|ref|XP_003709348.1| sensor protein zRas [Magnaporthe oryzae 70-15]
gi|351648877|gb|EHA56736.1| sensor protein zRas [Magnaporthe oryzae 70-15]
Length = 1994
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 135/285 (47%), Gaps = 53/285 (18%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRTCSKDLLGILNSVMEM 453
L+ SH++R L I G+V E T L E I T + L+ I+N ++++
Sbjct: 1323 LSNMSHEIRTPLIGISGMVSFLQE-----TTLTEEQRDYTNTIHTSANSLIMIINDILDL 1377
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDGSVLGSCHVRGDR 511
SK++AG M+L E F+ L+E V ++ + I KG+++ +++P V+GD+
Sbjct: 1378 SKVDAGMMKLKYEWFHTTSLIEAVNELVSTMAIAKGLELNYIVEPEV-----PAWVKGDK 1432
Query: 512 VKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEG 571
V+++Q+L N++ N++KFTSEG V S+C N+ G
Sbjct: 1433 VRIRQVLLNVIGNAIKFTSEGE----------------------VFSRCSVATVKENEIG 1470
Query: 572 FDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631
D++ EF + DTG+G KD+ IF+ F Q+ ++ G GLGL
Sbjct: 1471 EDEI-------------MLEFSIIDTGRGFTKDESELIFKPFSQIDGSSTRQHGGSGLGL 1517
Query: 632 GIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT 676
I + +V L G++ PG +G F F + +RP++
Sbjct: 1518 VISRQLVELHGGQMN-GTATPG-KGSTFTFTAKFGLPTDSDRPES 1560
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 10/121 (8%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G + L+VED+ I KV L K+G EV R+G+E + V G + I
Sbjct: 1869 GLRVLLVEDNPINQKVLIKYLKKVGVAVEVARDGEECTEMVFG-------HGPGY-FALI 1920
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
+ D MP +G+ A R +R+ E+Q +PIIAL+A+ MA V + + AG D ++TKP
Sbjct: 1921 LCDLHMPKKDGYTACREVRQWEQQTPDGPKLPIIALSANVMADVQERCIQAGFDAYVTKP 1980
Query: 1080 L 1080
+
Sbjct: 1981 V 1981
>gi|392541327|ref|ZP_10288464.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas piscicida
JCM 20779]
Length = 907
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 140/295 (47%), Gaps = 53/295 (17%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SH++R L I+G+ L ++ A+ L I + LL ++N V++
Sbjct: 261 KSTFLANISHEIRTPLNGILGMTSLLARESLSKKQ-ADFLQTIHNSGEHLLSLINDVLDF 319
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
SKIE+GKME F+L +L+E V +Y + +KG+++V + + + +C D+ +
Sbjct: 320 SKIESGKMEFENISFDLNELVENCVMLYANKAQEKGLEIVYN-IEANAQVTC--IADKTR 376
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
+ QILCNL+SN +KFT EG++ + + K G
Sbjct: 377 ITQILCNLISNGIKFTKEGYVKIHVS-----------------------------KTG-- 405
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
++ H+V R F V DTG GIPK ++ +F+ F QV+ G GLGL I
Sbjct: 406 -VELPHTVLR--------FSVKDTGIGIPKSGEHKLFDVFTQVESATTRKYGGTGLGLAI 456
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWP 688
+S+V + GEI ++ +G F F + + R P T P T + P
Sbjct: 457 CKSIVEALGGEIGWNSRQG--KGSEFFFTLPV-----RVNPTTS--SPYTQGELP 502
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K LV ED+ + +++ LG G K + NG+ A D +C+ YD I+M
Sbjct: 650 KILVAEDNLVNIELMKHYLGACGYKADFAENGQIALDKLCE-----------KQYDLILM 698
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MPV++G + TR + + Y P I+ALTA+A + + GM LTKP+ +
Sbjct: 699 DMRMPVLDGLQTTREVFR---IYGDQAPQIVALTANATVADKKQCLATGMVDFLTKPVVE 755
Query: 1083 DKLLDVVK 1090
L+ ++
Sbjct: 756 ADLVSCLQ 763
>gi|418679184|ref|ZP_13240449.1| 7TM diverse intracellular signaling [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|400320599|gb|EJO68468.1| 7TM diverse intracellular signaling [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
Length = 820
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 44/293 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 422 IQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 480
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ + + +K +D L +G
Sbjct: 481 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLFPLAKQKEIDFRL---EGK 537
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+V GD ++L+QIL NL N +KFT+ G + ++ A K S
Sbjct: 538 SEIQEYVYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKNIS---------------- 581
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
K+G + EF V D+G GIP +KQ +FE F Q +
Sbjct: 582 --------KDG----------------VSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 617
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL I + ++ L G + + +E F + + ++ E E+
Sbjct: 618 ARKFGGSGLGLSITKQLIELQGGVLKLESQEGEGSKFTFTIDYDIPSILEIEK 670
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 91/216 (42%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 614 DTSTARKFGGSGLGLSITKQLIELQGGV------LKLESQEGEGSKFTFTIDYDIPSILE 667
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V ++S + LV ED+ + L K
Sbjct: 668 IEKILEAEKTKDLEK---SFQDVVSKS-----------TRILVAEDNETNCLLIERALKK 713
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + + + +D I+MD MP ++G EAT+ IR + +
Sbjct: 714 LGYDPTVVHNGREVIERM-----------QLETFDIILMDIHMPEVDGIEATKWIRSKNQ 762
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I IIALTA A+ K + GM+ LTKPL
Sbjct: 763 NSKFPI-IIALTADAIESSREKYISKGMNDCLTKPL 797
>gi|262173448|ref|ZP_06041125.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451]
gi|261890806|gb|EEY36793.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451]
Length = 1586
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 132/272 (48%), Gaps = 44/272 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTD--LAENLGLIRTC 439
A AE+ + K+ LA SH++R L AI+GL L +++ + L + +G+
Sbjct: 830 QALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESLTESQHRLVDKIGI---S 886
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
K LLGI+N V+++SKIEA +M L +L + LEEV ++ K +D L+
Sbjct: 887 GKSLLGIVNDVLDLSKIEANEMILEALPLDLREFLEEVASVFSTQAEAKNLDFKLE---M 943
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
V V D ++L+QIL NL+SN++KFTS GHI++RA + K + + +N++
Sbjct: 944 GVDLPHWVIADSMRLRQILTNLLSNALKFTSVGHIALRAEIIDKFIWK---GAEKNIV-- 998
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
F + DTG GI ++ Q +F+ F Q +
Sbjct: 999 -------------------------------RFSITDTGIGISEEAQKRLFKPFSQADTS 1027
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651
G GLGL IV + LM+G+I + +E
Sbjct: 1028 TSRRFGGTGLGLSIVHKLSGLMEGKIGVESRE 1059
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 922 PLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKC-SEKPLNGKKFLVVEDDAIVLKVTSA 980
P+N F A +++S H + +V + + K L G + LVV+D A L+V
Sbjct: 1199 PINASAVFNA-VNSAVSQHSGNANRVLQSTRTEAIKAKWLLGFRVLVVDDSATNLEVADY 1257
Query: 981 VLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040
VL + GA V +G+EA ++ L+++ + YD ++MD +MP M+G E TR IR
Sbjct: 1258 VLTQAGATTNVVASGEEA-------INKLKQQNE---YDAVLMDVQMPGMDGLETTRYIR 1307
Query: 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKS 1091
+ + +PIIALTA A+ + +GM+ LTKP+ +L+ V+++
Sbjct: 1308 NTLKLHS--LPIIALTAGALVEERKRAFASGMNDFLTKPISPSRLISVLRT 1356
>gi|347531289|ref|YP_004838052.1| putative signal transduction histidine kinase [Roseburia hominis
A2-183]
gi|345501437|gb|AEN96120.1| putative signal transduction histidine kinase [Roseburia hominis
A2-183]
Length = 954
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 138/283 (48%), Gaps = 46/283 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A QA + K LA+ SH++R + AI+GL E+ ++ G + E L I T SK
Sbjct: 556 AVAQANSANEAKGQFLARMSHEIRTPINAIVGLTEIARHRSDEGGGVEECLDKIDTSSKV 615
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL I+N V++MS IE+ K+++ + F+L ++L+ + +Y +K + ++ + V
Sbjct: 616 LLAIVNDVLDMSAIESNKIKIAQAPFSLKEVLDSISAVYGTQCEQKKIAFTVEMDEVQVE 675
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
V+GD ++L Q+L NL+SN+ KFT EG S+R V + +Q+
Sbjct: 676 ---QVQGDVLRLNQVLLNLISNAYKFTPEGG-SIRVTVSELPMQQE-------------- 717
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
FF ++F V DTG+G+ ++ Q +F F Q +
Sbjct: 718 -QFF-----------------------YKFVVTDTGEGMSEEMQERLFLPFEQEEAETAQ 753
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
H G GLGL I +++V LM G I+ K +GV F V L
Sbjct: 754 HHGGSGLGLSIAKNLVELMGGSISCQSK----KGVGTTFTVSL 792
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 11/139 (7%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
G++ L+ ED + ++ + +L + + NG+EA + E Y
Sbjct: 823 FGGRRILLAEDTEMNAEIVTELLELVNMHVDHAWNGEEAVERYM--------ESAPGTYM 874
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEE-QYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
++MD +MP MNG+EA + IR ++ + D IPI A+TA+A S ++AGM+ H+
Sbjct: 875 AVLMDVQMPGMNGYEAAKAIRAQKSSRPDAGEIPIYAMTANAYTEDISAALNAGMNGHIA 934
Query: 1078 KPLQKDKLLDVV-KSIDET 1095
KP+ L ++ KS++ET
Sbjct: 935 KPVDTAALYRLLKKSMEET 953
>gi|398376939|ref|ZP_10535120.1| signal transduction histidine kinase [Rhizobium sp. AP16]
gi|397727411|gb|EJK87836.1| signal transduction histidine kinase [Rhizobium sp. AP16]
Length = 1129
Score = 114 bits (284), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 138/298 (46%), Gaps = 50/298 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
+A E AE + K+ + SH++R L A++G ++ D +L +IR ++
Sbjct: 665 SAKEAAEAANRAKSRYVVGLSHELRTPLNAVLGYAQILERDETIPAPRQSSLKVIRRSAE 724
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
L G+++ ++++SKIEAG++++ E N+ L+++VDM+ KG+ V +P
Sbjct: 725 HLSGLIDGLLDISKIEAGRLQVYSNEINIKDFLDQIVDMFRPQAQAKGLAFVYEPTAAL- 783
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+VR D +L+QIL NL+SN++KFT G + + + I + R + K L
Sbjct: 784 --PDYVRTDEKRLRQILVNLLSNAIKFTDTGSVRFEVGYRSQVATFTIADTGRGIAEKDL 841
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
++ I+E F + + ++
Sbjct: 842 TR---------------------------------------------IYEPFQRGEAESI 856
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEE 679
GLGLGL I Q + + + GEIA+ ++ ++G F+ ++L+AV +P E+
Sbjct: 857 RPMPGLGLGLTITQLLTNTLGGEIAVVSEK--DKGSTFKVRLMLSAVLRPMKPPAQEQ 912
>gi|421089680|ref|ZP_15550484.1| 7TM diverse intracellular signaling [Leptospira kirschneri str.
200802841]
gi|410001504|gb|EKO52100.1| 7TM diverse intracellular signaling [Leptospira kirschneri str.
200802841]
Length = 820
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 44/293 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 422 IQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 480
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ + + +K +D L +G
Sbjct: 481 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLFPLAKQKEIDFRL---EGK 537
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+V GD ++L+QIL NL N +KFT+ G + ++ A K S
Sbjct: 538 SEIQEYVYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKNIS---------------- 581
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
K+G + EF V D+G GIP +KQ +FE F Q +
Sbjct: 582 --------KDG----------------VSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 617
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL I + ++ L G + + +E F + + ++ E E+
Sbjct: 618 ARKFGGSGLGLSITKQLIELQGGVLKLESQEGEGSKFTFTIDYDIPSILEIEK 670
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 91/216 (42%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 614 DTSTARKFGGSGLGLSITKQLIELQGGV------LKLESQEGEGSKFTFTIDYDIPSILE 667
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V ++S + LV ED+ + L K
Sbjct: 668 IEKILEAEKTKDLEK---SFQDVVSKS-----------TRILVAEDNETNCLLIERALKK 713
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + + + +D I+MD MP ++G EAT+ IR + +
Sbjct: 714 LGYDPTVVHNGREVIERM-----------QLETFDIILMDIHMPEVDGIEATKWIRSKNQ 762
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I IIALTA A+ K + GM+ LTKPL
Sbjct: 763 NSKFPI-IIALTADAIESSREKYISKGMNDCLTKPL 797
>gi|386391642|ref|ZP_10076423.1| signal transduction histidine kinase [Desulfovibrio sp. U5L]
gi|385732520|gb|EIG52718.1| signal transduction histidine kinase [Desulfovibrio sp. U5L]
Length = 1072
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 128/274 (46%), Gaps = 43/274 (15%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LAK SHD+R L +IIGL ++ + P D+ +NL + ++ LL ++ +++ S+ E
Sbjct: 569 LAKMSHDIRTPLNSIIGLTDITLQSRVP-ADVRDNLAHVLEAARGLLELVGDLLDFSRAE 627
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH--VRGDRVKLK 515
A + L EE+F+LA+LL VV + KG+ + L +C VRGD +L+
Sbjct: 628 AKGLTLKEEDFSLARLLAVVVRSFTAQARFKGLGLRLRQDR-----ACPRVVRGDPARLR 682
Query: 516 QILCNLVSNSMKFTSEGHISVRA--AVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
Q+L NLV N++KFT G +++R A + S ++ +
Sbjct: 683 QVLANLVGNALKFTDHGQVALRVEPAARPASLGPAGPGADGAAV---------------- 726
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
F V DTG GI + Q SIFE F Q G GLGL I
Sbjct: 727 ---------------WLRFTVADTGLGIAAEAQASIFEPFRQASGDITARFGGSGLGLAI 771
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
+ MV LM G I +A PG+ G F F V L A
Sbjct: 772 CRQMVDLMGGVIEVAST-PGQ-GSVFAFAVPLAA 803
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 15/137 (10%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
++P++ L+ ED+ + +K+ A+L +LG + V +G+EA + A
Sbjct: 826 QRPMH---LLLAEDNPMNVKLAKALLSRLGHRLTVAGSGREAIARLA-----------AE 871
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASKIVDAGMDFH 1075
+D ++MD EMP M+G EATR IR E D PI+A+TAHA++ + AG+D
Sbjct: 872 SFDAVLMDVEMPEMDGIEATRRIRAGEAGADRSGTPIVAMTAHALSTFMERCRQAGVDAF 931
Query: 1076 LTKPLQKDKLLDVVKSI 1092
+ KP+ +L DV+++I
Sbjct: 932 VAKPVDFGQLADVLRAI 948
>gi|197116465|ref|YP_002136892.1| response receiver histidine kinase response regulator [Geobacter
bemidjiensis Bem]
gi|197085825|gb|ACH37096.1| response receiver histidine kinase response regulator [Geobacter
bemidjiensis Bem]
Length = 578
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 133/287 (46%), Gaps = 53/287 (18%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLIRTCSKDLLGILNSVME 452
K+ LA SH++R + ++G+ EL H + + + ++ + LLGI+N ++
Sbjct: 197 KSQFLANMSHEIRTPMNGVLGMAELLLHSELDEKQ--KSYVKILHQSGESLLGIINDILN 254
Query: 453 MSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRV 512
+SKIEAG++E+ F+L + V++Y VG +KGV V L + + C V GD
Sbjct: 255 ISKIEAGRLEIERIPFDLHETARGAVELYREVGRRKGVAVELQIEED--VPRCVV-GDPS 311
Query: 513 KLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGF 572
+L+Q+L N+V+N +KFT +G + VR +
Sbjct: 312 RLRQVLINVVNNGLKFTDKGSVQVRVTL-------------------------------- 339
Query: 573 DDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632
VE+ N FEV DTG GIP D IF F QV + G GLGL
Sbjct: 340 --------VEQYQNGQYVAFEVKDTGIGIPADCIGDIFGLFAQVDGSTTRKYGGTGLGLA 391
Query: 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL-----TAVCERERP 674
I + +V LM G I + + EPG+ G F F V L C+ + P
Sbjct: 392 IAKQLVELMGGAIGV-ESEPGQ-GSTFTFIVFLHRHADQTTCDEDTP 436
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 75/126 (59%), Gaps = 11/126 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+ ED+ + +V A++ LG + +V ++G+EA + + PYD I M
Sbjct: 455 RVLLAEDNPVNCEVAFAMIAALGCQVDVAQDGREAVEAFTR-----------QPYDLIFM 503
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
DC+MP M+G++ATR IR+ E H +IALTAHAMAG + AGMD +L+KP +
Sbjct: 504 DCQMPEMDGYQATRAIRQRELGSGRHTTVIALTAHAMAGAREHCLSAGMDDYLSKPFNLE 563
Query: 1084 KLLDVV 1089
+L +++
Sbjct: 564 QLQELI 569
>gi|440469512|gb|ELQ38620.1| sensor protein zraS [Magnaporthe oryzae Y34]
gi|440487217|gb|ELQ67021.1| sensor protein zraS [Magnaporthe oryzae P131]
Length = 1994
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 135/285 (47%), Gaps = 53/285 (18%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRTCSKDLLGILNSVMEM 453
L+ SH++R L I G+V E T L E I T + L+ I+N ++++
Sbjct: 1323 LSNMSHEIRTPLIGISGMVSFLQE-----TTLTEEQRDYTNTIHTSANSLIMIINDILDL 1377
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDGSVLGSCHVRGDR 511
SK++AG M+L E F+ L+E V ++ + I KG+++ +++P V+GD+
Sbjct: 1378 SKVDAGMMKLKYEWFHTTSLIEAVNELVSTMAIAKGLELNYIVEPEV-----PAWVKGDK 1432
Query: 512 VKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEG 571
V+++Q+L N++ N++KFTSEG V S+C N+ G
Sbjct: 1433 VRIRQVLLNVIGNAIKFTSEGE----------------------VFSRCSVATVKENEIG 1470
Query: 572 FDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631
D++ EF + DTG+G KD+ IF+ F Q+ ++ G GLGL
Sbjct: 1471 EDEI-------------MLEFSIIDTGRGFTKDESELIFKPFSQIDGSSTRQHGGSGLGL 1517
Query: 632 GIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT 676
I + +V L G++ PG +G F F + +RP++
Sbjct: 1518 VISRQLVELHGGQMN-GTATPG-KGSTFTFTAKFGLPTDSDRPES 1560
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 10/121 (8%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G + L+VED+ I KV L K+G EV R+G+E + V G + I
Sbjct: 1869 GLRVLLVEDNPINQKVLIKYLKKVGVAVEVARDGEECTEMVFG-------HGPGY-FALI 1920
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
+ D MP +G+ A R +R+ E+Q +PIIAL+A+ MA V + + AG D ++TKP
Sbjct: 1921 LCDLHMPKKDGYTACREVRQWEQQTPDGPKLPIIALSANVMADVQERCIQAGFDAYVTKP 1980
Query: 1080 L 1080
+
Sbjct: 1981 V 1981
>gi|254506216|ref|ZP_05118360.1| PAS fold family protein [Vibrio parahaemolyticus 16]
gi|219551034|gb|EED28015.1| PAS fold family protein [Vibrio parahaemolyticus 16]
Length = 1319
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 136/282 (48%), Gaps = 48/282 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC-HEDANPGTDLAENLGLIRTCSK 441
A E A+ S K LA SH++R + AI+G+ L + + +P + L I +K
Sbjct: 597 AKELADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTELDPSQ--KKYLTRINESAK 654
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
+LLGI+N +++ SKIEAGK+ + +F+L ++ + +V++ + +KGV+ +LD
Sbjct: 655 NLLGIINDILDFSKIEAGKLTVESIDFSLDEVFDNLVNVVSYKAHEKGVEFLLDIDPKVP 714
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+G + GD ++L Q+L NL SNS+KFT +G I V A V++ + NR I
Sbjct: 715 IG---LVGDPLRLGQVLVNLCSNSVKFTEKGEIVVSALVEQ-------LDENRATI---- 760
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
F V DTG GI K+K +F F Q +
Sbjct: 761 -----------------------------RFSVKDTGIGIAKEKIQHLFRAFSQADSSIT 791
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V LM GE+ ++ E G F F +
Sbjct: 792 RQFGGTGLGLSISKQLVELMGGELVVSSSEG--TGSVFSFTI 831
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 13/118 (11%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+ L+VED+ + +V +L V +G+EA K+L + ++
Sbjct: 992 QTVLLVEDNEVNQEVALGLLSDTNLDVLVANHGQEAI----KMLGHHK-------VSLVL 1040
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
MD +MPVM+G A + IRK++E + +PI+A+TA+AM + ++AGM+ H+ KP+
Sbjct: 1041 MDMQMPVMDGITACQEIRKKDEWQE--LPIVAMTANAMQSDVERCINAGMNGHIAKPI 1096
Score = 43.5 bits (101), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 21/134 (15%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK+ L+V+D+ + +L + + N EA D E K YD
Sbjct: 850 LAGKRALIVDDNDSARSILRTLLTAMHFDAKAVSNAYEALD-----------ELKERAYD 898
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAH----AMAGVASKIVDAGMDFH 1075
+ +D MP MNG E L + +E+ H + +TA+ ++ +SK++DA
Sbjct: 899 MLFVDWTMPGMNGLEL--LQKAHDERLLPHCKVFLVTAYGRELSLTEQSSKLIDA----L 952
Query: 1076 LTKPLQKDKLLDVV 1089
+ KP+ LLD V
Sbjct: 953 IVKPVNPSNLLDAV 966
>gi|70730321|ref|YP_260060.1| sensor histidine kinase/response regulator [Pseudomonas protegens
Pf-5]
gi|68344620|gb|AAY92226.1| sensor histidine kinase/response regulator [Pseudomonas protegens
Pf-5]
Length = 1068
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 135/298 (45%), Gaps = 49/298 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
+A E AE S +KT L SH++R L+AI+G++EL N ++ + ++
Sbjct: 576 DAKEAAEHASRSKTVFLTTMSHEIRTPLSAIVGMLELVLTRDNDRELNTRSVHIAYESAQ 635
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
+LL ++ ++++S+IE+G++ L E +L L+E V +++ + +K +D+ L
Sbjct: 636 NLLALIGHILDISRIESGRLTLRPEAASLKDLIESVANVFDGLARQKHLDIHL---QFDA 692
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+ V D +K KQI+ NL+SN++KFT +G I +R CL
Sbjct: 693 WATAQVWIDGLKFKQIISNLLSNAIKFTEQGEIHIR----------------------CL 730
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
++ ++ + L F EV DTG GIP + IF F +V
Sbjct: 731 GQV------------------KDEHFLDFHVEVIDTGPGIPASQIQKIFTPFFEVDSVVS 772
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFR--FNVLLTAVCERERPDTD 677
G GLGL I S+ LM G + + E GV R F V + TD
Sbjct: 773 NPNAGSGLGLSISHSLTQLMNGSLQVQ----SELGVGTRMTFKACFQRVADERSSTTD 826
Score = 45.4 bits (106), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASKIVDAGMDFHLT 1077
D I+ DC MP M+G E ++ IR+ E Q V II LTA A + + +GMD L
Sbjct: 885 DIIITDCNMPQMSGHEMSQAIRRMEGQMGVRPCTIIGLTASAQLEELERCLASGMDSALA 944
Query: 1078 KPL 1080
KP+
Sbjct: 945 KPI 947
>gi|152991089|ref|YP_001356811.1| two-component sensor histidine kinase/response regulator
[Nitratiruptor sp. SB155-2]
gi|151422950|dbj|BAF70454.1| two-component sensor histidine kinase/response regulator
[Nitratiruptor sp. SB155-2]
Length = 1044
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 139/299 (46%), Gaps = 49/299 (16%)
Query: 372 FLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAE 431
L AL K +A AE S K+ LA SH++R L IIG +L ++ + E
Sbjct: 374 LLETALKKAQDAKTAAEEASHAKSMFLANMSHEIRTPLNGIIGFTDLL-KNTELTPEQRE 432
Query: 432 NLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD 491
+ +I S++LL I+N+++++SKIE+ K+E+ FN + E +++Y +K ++
Sbjct: 433 FVNIIEKSSENLLEIINAILDLSKIESKKIEIENIVFNPIEEFENAIEVYAPRAAEKDIN 492
Query: 492 VVL--DPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDI 549
L DP L +GD K+K++L NL+SN++KFT G +V ++K
Sbjct: 493 FALFVDPHLNKPL-----KGDPTKIKEVLINLISNAIKFTDRGG-NVTVEIRK------- 539
Query: 550 IASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSI 609
V+ + FEV DTG GIP+DKQ I
Sbjct: 540 -------------------------------VKEYNERAEIYFEVRDTGIGIPEDKQKQI 568
Query: 610 FEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
FE F Q + G GLGL I + LM G + + + E G +G F F ++L V
Sbjct: 569 FEAFSQADSSVTRKFGGTGLGLTISSEFIKLMGGRLNL-ESEVG-KGTKFFFTLVLEEV 625
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 76/128 (59%), Gaps = 12/128 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K LV ED+ I K+ L LG ++ NG EAF+ RK G YD I M
Sbjct: 775 KALVAEDNTINQKLIKKTLEDLGLTVDLANNGLEAFEK--------RKNG---DYDIIFM 823
Query: 1024 DCEMPVMNGWEAT-RLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D +MP+M+G EAT ++ EEE HIPIIALTAHA+ G + ++ GMD ++TKPL K
Sbjct: 824 DIQMPIMDGVEATHEILEYEEESNQPHIPIIALTAHALKGDRERYINEGMDEYITKPLIK 883
Query: 1083 DKLLDVVK 1090
++L+ ++K
Sbjct: 884 NELVAILK 891
>gi|370988691|dbj|BAL43559.1| cytokinin receptor histidine protein kinase [Petunia x hybrida]
Length = 985
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 156/314 (49%), Gaps = 45/314 (14%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
QAE + K+ LA SH++R + I+G++ L D + + + + C K L+
Sbjct: 371 QAEAADVAKSQFLATVSHEIRTPMNGILGMLALLL-DTDLRSTQRDYAQTAQACGKSLIT 429
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV---VLDPCDGSVL 502
++N V++ +KIEAGK+EL F+L +L++V+ ++ +KGV++ V D G V+
Sbjct: 430 LINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSDESRRKGVELAVFVSDKVPGIVM 489
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL- 561
GD + +Q++ NLV NS+KFT +GHI V+ + +++ +D + +N CL
Sbjct: 490 ------GDPGRFRQVITNLVGNSVKFTEQGHIFVQVHLAEQT--KDGVKNN-----TCLT 536
Query: 562 --SKLFFRNKEGFD------DLDAL-HSV------------ERNPNLLQ---FEFEVDDT 597
S+ + G++ D+L H++ E N +L Q V+DT
Sbjct: 537 GESESVYETLSGYETAASQNTWDSLKHTIADNGLYYKSATKEANDDLSQNVTVMVSVEDT 596
Query: 598 GKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGV 657
G GIP Q+ +F F+Q + + G G+GL I + +V LM G+I +
Sbjct: 597 GIGIPIQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIGFISRPQIGSTF 656
Query: 658 CFRFNVLLTAVCER 671
F N+L CE+
Sbjct: 657 SFTLNLLR---CEK 667
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 31/155 (20%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP-- 1017
L GKK LVV+D+ + +V + L K GA E +GK A LS L+ +P
Sbjct: 837 LCGKKILVVDDNLVNRRVAAGALKKFGADVECADSGKAA-------LSLLQ-----IPHN 884
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEE----EQYD-------------VHIPIIALTAHAM 1060
+D MD +MP M+G+EATR IR E EQ + H+PI+A+TA +
Sbjct: 885 FDACFMDIQMPEMDGFEATRRIRDLERVANEQLNGGLNSDGATKWRKWHMPILAMTADVI 944
Query: 1061 AGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095
K + GMD +++KP +++ L V E+
Sbjct: 945 HATLEKCLKCGMDGYVSKPFEEENLYQAVSKFFES 979
>gi|421125137|ref|ZP_15585393.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421135628|ref|ZP_15595749.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410020292|gb|EKO87096.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410437433|gb|EKP86533.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
Length = 820
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 46/283 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 422 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 480
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ Y + +K ++ L +G
Sbjct: 481 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 537
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V GD ++L+QIL NL N +KFTS G + ++ + +N+
Sbjct: 538 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLK-------------VTQKNISKSS 584
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+S EF V D+G GIP +KQ +FE F Q +
Sbjct: 585 VS---------------------------IEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 617
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V L G + + K+ GE G F F +
Sbjct: 618 ARKFGGSGLGLSITKQLVELQGGVLKLESKD-GE-GSKFTFTI 658
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 614 DTSTARKFGGSGLGLSITKQLVELQGGV------LKLESKDGEGSKFTFTIDYDIPSALE 667
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V A+S + LV ED+ + L K
Sbjct: 668 IEKILEAEKTKDLEK---SFQDVVAKST-----------RILVAEDNETNCLLIERALKK 713
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + R + +A +D I+MD MP ++G EAT+ IR + +
Sbjct: 714 LGYDPTVVHNGREVIE---------RMQLEA--FDIILMDIHMPEVDGIEATKWIRSKNQ 762
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ I IIALTA A+ K + GM+ LTKPL
Sbjct: 763 NSEFPI-IIALTADAIESSKEKYISKGMNDCLTKPL 797
>gi|356512385|ref|XP_003524900.1| PREDICTED: histidine kinase 3-like [Glycine max]
Length = 1030
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 150/299 (50%), Gaps = 21/299 (7%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRT 438
K+M +QAE + K+ LA SH++R + ++G++ + D + E + +
Sbjct: 432 KEMELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLM-DTDLDVTQQEYVRTAQE 490
Query: 439 CSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
K L+ ++N V++ +KIE GK+EL F++ +L++V+ ++ KGV++
Sbjct: 491 SGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVEL------ 544
Query: 499 GSVLGSCHVR----GDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKK---KSFKQDIIA 551
+V S HV GD + +QI+ NL+ NS+KFT +GHI V + + +S + D +
Sbjct: 545 -AVYVSDHVPELLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVRSIEVDKES 603
Query: 552 SNRNVISKCLSKLFFRNKEGFDDLD---ALHSVER-NPNLLQFEFEVDDTGKGIPKDKQN 607
++ N +S R+ EGF L S + +L+ V+DTG+GIP + Q
Sbjct: 604 NSENTLSGSPVADSRRSWEGFKAFSQEGPLGSFSSPSSDLVNLIVSVEDTGEGIPLESQP 663
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
I+ F+QV + G G+GL I + +V LM GEI + G F F + T
Sbjct: 664 LIYTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIP--KTGSTFTFTAVFT 720
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 23/139 (16%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G+K L+V+D+++ V + L K GA +GK+A +S L+ + +D
Sbjct: 891 LRGRKILIVDDNSVNRAVAAGALKKYGADVVCVSSGKDA-------ISSLKPPHQ---FD 940
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD-------------VHIPIIALTAHAMAGVASK 1066
MD +MP M+G+EAT+ +R+ E+ + H+PI+A+TA + +
Sbjct: 941 ACFMDIQMPEMDGFEATKRVREMEDSVNREVSMDDFENITNWHVPILAMTADVIHATHEE 1000
Query: 1067 IVDAGMDFHLTKPLQKDKL 1085
+ GMD +++KP + ++L
Sbjct: 1001 CLKWGMDGYVSKPFEAEQL 1019
>gi|418715572|ref|ZP_13275693.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
08452]
gi|410788473|gb|EKR82191.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
08452]
Length = 804
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 46/283 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 406 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 464
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ Y + +K ++ L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 521
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V GD ++L+QIL NL N +KFTS G + ++ + +N+
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLK-------------VTQKNISKSS 568
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+S EF V D+G GIP +KQ +FE F Q +
Sbjct: 569 VS---------------------------IEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 601
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V L G + + K+ GE G F F +
Sbjct: 602 ARKFGGSGLGLSITKQLVELQGGVLKLESKD-GE-GSKFTFTI 642
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 598 DTSTARKFGGSGLGLSITKQLVELQGGV------LKLESKDGEGSKFTFTIDYDIPSALE 651
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V A+S + LV ED+ + L K
Sbjct: 652 IEKILEAEKTKDLEK---SFQDVVAKST-----------RILVAEDNETNCLLIERALKK 697
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + R + +A +D I+MD MP ++G EAT+ IR + +
Sbjct: 698 LGYDPTVVHNGREVIE---------RMQLEA--FDIILMDIHMPEVDGIEATKWIRSKNQ 746
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ I IIALTA A+ K + GM+ LTKPL
Sbjct: 747 NSEFPI-IIALTADAIESSKEKYISKGMNDCLTKPL 781
>gi|418710621|ref|ZP_13271390.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410769062|gb|EKR44306.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
Length = 804
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 46/283 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 406 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 464
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ Y + +K ++ L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 521
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V GD ++L+QIL NL N +KFTS G + ++ + +N+
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLK-------------VTQKNISKSS 568
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+S EF V D+G GIP +KQ +FE F Q +
Sbjct: 569 VS---------------------------IEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 601
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V L G + + K+ GE G F F +
Sbjct: 602 ARKFGGSGLGLSITKQLVELQGGVLKLESKD-GE-GSKFTFTI 642
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 598 DTSTARKFGGSGLGLSITKQLVELQGGV------LKLESKDGEGSKFTFTIDYDIPSALE 651
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V A+S + LV ED+ + L K
Sbjct: 652 IEKILEAEKTKDLEK---SFQDVVAKST-----------RILVAEDNETNCLLIERALKK 697
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + R + +A +D I+MD MP ++G EAT+ IR + +
Sbjct: 698 LGYDPTVVHNGREVIE---------RMQLEA--FDIILMDIHMPEVDGIEATKWIRSKNQ 746
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ I IIALTA A+ K + GM+ LTKPL
Sbjct: 747 NSEFPI-IIALTADAIESSKEKYISKGMNDCLTKPL 781
>gi|189501026|ref|YP_001960496.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
BS1]
gi|189496467|gb|ACE05015.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
BS1]
Length = 993
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 137/293 (46%), Gaps = 50/293 (17%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA--NPGTDLA 430
L A++ + +A+ + K+ LA SH++R + +IG+ EL A
Sbjct: 316 LEASIARANTMASEADAANKAKSEFLANMSHEIRTPMNGVIGMSELLLRSTLDKEQKKFA 375
Query: 431 ENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV 490
E I K+LL +LN +++ SKIEA K+E+ E +FNL LL+E+++M+ + KKG+
Sbjct: 376 ET---INASGKNLLHLLNDILDFSKIEADKLEIEEIDFNLLDLLDEIINMFSYKAGKKGL 432
Query: 491 DVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDII 550
+ P + L +RGD ++KQIL NL+SN++KFT EG I V +
Sbjct: 433 NFTFLPDEDIPL---LLRGDPGRIKQILVNLISNAIKFTDEGEILVNVEL---------- 479
Query: 551 ASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIF 610
+E F D + F V DTG GI + + ++IF
Sbjct: 480 ------------------EEDFGD------------NARIRFTVSDTGIGIDESRMDAIF 509
Query: 611 EEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
E FVQ + + G GLGL I + M G I + + +G F F++
Sbjct: 510 EPFVQADGSTIRKYGGTGLGLSISNKLARNMGGRIQV--RSTPSQGSMFYFSI 560
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 12/128 (9%)
Query: 955 CSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK 1014
+EK + L+VED + V ++L K G + +V +NG EA + K+
Sbjct: 722 VTEKERRHFRILLVEDSEVNQLVLLSMLQKEGYEADVVQNGTEALVALAKV--------- 772
Query: 1015 ALPYDYIMMDCEMPVMNGWEATRLIRKEEEQ-YDVHIPIIALTAHAMAGVASKIVDAGMD 1073
YD ++MDC+MP M+G+EATR IR+ + + +PI+A+TA+AM G + + AGMD
Sbjct: 773 --HYDLVLMDCQMPEMDGYEATRCIRRGQGNVMNPEVPIVAITANAMTGDRERCLQAGMD 830
Query: 1074 FHLTKPLQ 1081
++ KP++
Sbjct: 831 DYMAKPVR 838
>gi|418727285|ref|ZP_13285880.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
12621]
gi|409959526|gb|EKO23296.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
12621]
Length = 820
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 46/283 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 422 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 480
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ Y + +K ++ L +G
Sbjct: 481 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 537
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V GD ++L+QIL NL N +KFTS G + ++ + +N+
Sbjct: 538 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLK-------------VTQKNISKSS 584
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+S EF V D+G GIP +KQ +FE F Q +
Sbjct: 585 VS---------------------------IEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 617
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V L G + + K+ GE G F F +
Sbjct: 618 ARKFGGSGLGLSITKQLVELQGGVLKLESKD-GE-GSKFTFTI 658
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 614 DTSTARKFGGSGLGLSITKQLVELQGGV------LKLESKDGEGSKFTFTIDYDIPSALE 667
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V A+S + LV ED+ + L K
Sbjct: 668 IEKILEAEKTKDLEK---SFQDVIAKST-----------RILVAEDNETNCLLIERALKK 713
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + R + +A +D I+MD MP ++G EAT+ IR + +
Sbjct: 714 LGYDPTVVHNGREVIE---------RMQLEA--FDIILMDIHMPEVDGIEATKWIRSKNQ 762
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ I IIALTA A+ K + GM+ LTKPL
Sbjct: 763 NSEFPI-IIALTADAIESSKEKYISKGMNDCLTKPL 797
>gi|417786027|ref|ZP_12433724.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
C10069]
gi|418702445|ref|ZP_13263353.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Bataviae str. L1111]
gi|421083555|ref|ZP_15544429.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
HAI1594]
gi|421101425|ref|ZP_15562037.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|409950856|gb|EKO05378.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
C10069]
gi|410368597|gb|EKP23973.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410433916|gb|EKP78253.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
HAI1594]
gi|410758614|gb|EKR24843.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Bataviae str. L1111]
Length = 804
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 46/283 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 406 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 464
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ Y + +K ++ L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 521
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V GD ++L+QIL NL N +KFTS G + ++ + +N+
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLK-------------VTQKNISKSS 568
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+S EF V D+G GIP +KQ +FE F Q +
Sbjct: 569 VS---------------------------IEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 601
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V L G + + K+ GE G F F +
Sbjct: 602 ARKFGGSGLGLSITKQLVELQGGVLKLESKD-GE-GSKFTFTI 642
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 598 DTSTARKFGGSGLGLSITKQLVELQGGV------LKLESKDGEGSKFTFTIDYDIPSALE 651
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V A+S + LV ED+ + L K
Sbjct: 652 IEKILEAEKTKDLEK---SFQDVVAKST-----------RILVAEDNETNCLLIERALKK 697
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + R + +A +D I+MD MP ++G EAT+ IR + +
Sbjct: 698 LGYDPTVVHNGREVIE---------RMQLEA--FDIILMDIHMPEVDGIEATKWIRSKNQ 746
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ I IIALTA A+ K + GM+ LTKPL
Sbjct: 747 NSEFPI-IIALTADAIESSKEKYISKGMNDCLTKPL 781
>gi|149174846|ref|ZP_01853470.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
gi|148846183|gb|EDL60522.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
Length = 788
Score = 113 bits (283), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 157/313 (50%), Gaps = 49/313 (15%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A + AE+ S K+ LA SH++R + AI+G E+ + N +++ ++ IR +
Sbjct: 384 AQQDAEKASHIKSSFLANMSHEIRTPMTAILGFAEIMKQ-RNDDPEMSRHIDTIRKNGEY 442
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N ++++SKIEA K+E+ +L +LL++V + I +G+D+ + DGS+
Sbjct: 443 LLELINDILDVSKIEADKLEVEAIHCSLIELLDDVKTLMEIRAIDRGLDLSV-KIDGSI- 500
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++ D V+L+QIL NL+SN++KFT +GH+ Q I+ ++
Sbjct: 501 -PRWIQSDPVRLRQILINLLSNAIKFTRQGHV------------QLIVTAS--------- 538
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
S++ N ++Q F+V D+G G+ ++ + +F+ F+Q +
Sbjct: 539 -----------------SIDTNEPVIQ--FDVIDSGIGMTDEQISRLFQPFMQADSSTTR 579
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDT---DEE 679
G GLGL I + + H++ GEI++ + E G G F V E E D D E
Sbjct: 580 QYGGTGLGLTICKRLTHILGGEISV-NSEYG-NGTTFSVTVKTKRCQELEFIDQRTFDTE 637
Query: 680 DPRTHNDWPQTGL 692
T ND P++
Sbjct: 638 CINTINDTPESNF 650
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L+ ED K+ S +L K G + NG + I E PYD I+MD
Sbjct: 657 ILLAEDGIDNQKLISYLLNKSGNTVTLAENG------LIAIKKAQEAEEAGSPYDVILMD 710
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
+MP ++G+ AT+ +R + Y PIIALTAH M+G + + AG D + TKP+Q+D+
Sbjct: 711 MQMPELDGYAATKQLRSQGYPY----PIIALTAHTMSGAREECLAAGCDNYATKPIQRDQ 766
Query: 1085 LL 1086
L
Sbjct: 767 LF 768
>gi|45659014|ref|YP_003100.1| histidine kinase response regulator hybrid protein [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
gi|45602259|gb|AAS71737.1| histidine kinase response regulator hybrid protein [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
Length = 822
Score = 113 bits (283), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 46/283 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 424 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 482
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ Y + +K ++ L +G
Sbjct: 483 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 539
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V GD ++L+QIL NL N +KFTS G + ++ + +N+
Sbjct: 540 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLK-------------VTQKNISKSS 586
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+S EF V D+G GIP +KQ +FE F Q +
Sbjct: 587 VS---------------------------IEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 619
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V L G + + K+ GE G F F +
Sbjct: 620 ARKFGGSGLGLSITKQLVELQGGVLKLESKD-GE-GSKFTFTI 660
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 616 DTSTARKFGGSGLGLSITKQLVELQGGV------LKLESKDGEGSKFTFTIDYDIPSALE 669
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V A+S + LV ED+ + L K
Sbjct: 670 IEKILEAEKTKDLEK---SFQDVVAKST-----------RILVAEDNETNCLLIERALKK 715
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + R + +A +D I+MD MP ++G EAT+ IR + +
Sbjct: 716 LGYDPTVVHNGREVIE---------RMQLEA--FDIILMDIHMPEVDGIEATKWIRSKNQ 764
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ I IIALTA A+ K + GM+ LTKPL
Sbjct: 765 NSEFPI-IIALTADAIESSKEKYISKGMNDCLTKPL 799
>gi|418667248|ref|ZP_13228660.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410756851|gb|EKR18469.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|455793265|gb|EMF44967.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Lora str. TE 1992]
Length = 820
Score = 113 bits (283), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 46/283 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 422 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 480
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ Y + +K ++ L +G
Sbjct: 481 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 537
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V GD ++L+QIL NL N +KFTS G + ++ + +N+
Sbjct: 538 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLK-------------VTQKNISKSS 584
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+S EF V D+G GIP +KQ +FE F Q +
Sbjct: 585 VS---------------------------IEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 617
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V L G + + K+ GE G F F +
Sbjct: 618 ARKFGGSGLGLSITKQLVELQGGVLKLESKD-GE-GSKFTFTI 658
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 614 DTSTARKFGGSGLGLSITKQLVELQGGV------LKLESKDGEGSKFTFTIDYDIPSALE 667
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V A+S + LV ED+ + L K
Sbjct: 668 IEKILEAEKTKDLEK---SFQDVVAKST-----------RILVAEDNETNCLLIERALKK 713
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + R + +A +D I+MD MP ++G EAT+ IR + +
Sbjct: 714 LGYDPTVVHNGREVIE---------RMQLEA--FDIILMDIHMPEVDGIEATKWIRSKNQ 762
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ I IIALTA A+ K + GM+ LTKPL
Sbjct: 763 NSEFPI-IIALTADAIESSKEKYISKGMNDCLTKPL 797
>gi|421121811|ref|ZP_15582101.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
Brem 329]
gi|410345148|gb|EKO96267.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
Brem 329]
Length = 804
Score = 113 bits (283), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 46/283 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 406 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 464
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ Y + +K ++ L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 521
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V GD ++L+QIL NL N +KFTS G + ++ + +N+
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLK-------------VTQKNISKSS 568
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+S EF V D+G GIP +KQ +FE F Q +
Sbjct: 569 VS---------------------------IEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 601
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V L G + + K+ GE G F F +
Sbjct: 602 ARKFGGSGLGLSITKQLVELQGGVLKLESKD-GE-GSKFTFTI 642
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 598 DTSTARKFGGSGLGLSITKQLVELQGGV------LKLESKDGEGSKFTFTIDYDIPSALE 651
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V A+S + LV ED+ + L K
Sbjct: 652 IEKILEAEKTKDLEK---SFQDVIAKST-----------RILVAEDNETNCLLIERALKK 697
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + R + +A +D I+MD MP ++G EAT+ IR + +
Sbjct: 698 LGYDPTVVHNGREVIE---------RMQLEA--FDIILMDIHMPEVDGIEATKWIRSKNQ 746
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ I IIALTA A+ K + GM+ LTKPL
Sbjct: 747 NSEFPI-IIALTADAIESSKEKYISKGMNDCLTKPL 781
>gi|417767725|ref|ZP_12415661.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400349743|gb|EJP02031.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Bulgarica str. Mallika]
Length = 804
Score = 113 bits (283), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 46/283 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 406 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 464
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ Y + +K ++ L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 521
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V GD ++L+QIL NL N +KFTS G + ++ + +N+
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLK-------------VTQKNISKSS 568
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+S EF V D+G GIP +KQ +FE F Q +
Sbjct: 569 VS---------------------------IEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 601
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V L G + + K+ GE G F F +
Sbjct: 602 ARKFGGSGLGLSITKQLVELQGGVLKLESKD-GE-GSKFTFTI 642
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 598 DTSTARKFGGSGLGLSITKQLVELQGGV------LKLESKDGEGSKFTFTIDYDIPSALE 651
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V A+S + LV ED+ + L K
Sbjct: 652 IEKILEAEKTKDLEK---SFQDVVAKST-----------RILVAEDNETNCLLIERALKK 697
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + R + +A +D I+MD MP ++G EAT+ IR + +
Sbjct: 698 LGYDPTVVHNGREVIE---------RMQLEA--FDIILMDIHMPEVDGIEATKWIRSKNQ 746
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ I IIALTA A+ K + GM+ LTKPL
Sbjct: 747 NSEFPI-IIALTADAIESSKEKYISKGMNDCLTKPL 781
>gi|407928321|gb|EKG21180.1| PAS domain-containing protein [Macrophomina phaseolina MS6]
Length = 1873
Score = 113 bits (283), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 148/293 (50%), Gaps = 46/293 (15%)
Query: 385 EQAERKSMN-KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDL 443
EQ +++M+ K+ L+ SH++R L I G+V D+N ++ E++ +IR ++ L
Sbjct: 1186 EQTLKETMDAKSRFLSNMSHEIRTPLNGITGMVNFLI-DSNLTSEQMEHVNIIRNSTEGL 1244
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV--VLDPCDGSV 501
++N ++++SK+EAG + L + ++ L+EEV D+ + I KG+++ +++ S+
Sbjct: 1245 RDLINDILDLSKVEAGMITLAMDWMHVRSLIEEVNDLTSAMAINKGLELNYIVEEDVPSM 1304
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
V+GDR +++Q+L N+V N++KFT G + VR + + QDI S
Sbjct: 1305 -----VKGDRFRIRQVLLNVVGNAIKFTQRGEVFVRCRIAE---DQDIAVSG-------- 1348
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
N L+Q F+V DTG G + + +F+ F Q+ ++
Sbjct: 1349 ----------------------NETLVQ--FDVIDTGSGFTEKEAEFLFKRFSQIDGSST 1384
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
G GLGL I +V L G++ A PG +G F F + T + E+P
Sbjct: 1385 RQHGGTGLGLAISMQLVELHGGKMK-ASSVPG-KGSTFTFTIKFTLPSDNEQP 1435
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G + L+VED+ I V +LGK + +G E D K+ S + G Y I
Sbjct: 1732 GHRVLLVEDNKINQTVLLKLLGKTSINVDTVLDGVECTD---KVFS--KDHGY---YSII 1783
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ D MP +G++ + IRK E++ + H+PIIAL+A+ + V SK V+AG + ++TKP+
Sbjct: 1784 LCDLHMPNKDGYQTCKEIRKWEKKNKLPHLPIIALSANVLGDVYSKCVEAGFNSYVTKPV 1843
>gi|417771385|ref|ZP_12419280.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Pomona str. Pomona]
gi|418683285|ref|ZP_13244490.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|418692075|ref|ZP_13253156.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
FPW2026]
gi|418704695|ref|ZP_13265563.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418728841|ref|ZP_13287410.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
12758]
gi|421116595|ref|ZP_15576976.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|400324858|gb|EJO77142.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|400358138|gb|EJP14254.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
FPW2026]
gi|409946582|gb|EKN96591.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Pomona str. Pomona]
gi|410011838|gb|EKO69948.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410765643|gb|EKR36342.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410776244|gb|EKR56223.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
12758]
gi|455667064|gb|EMF32425.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Pomona str. Fox 32256]
Length = 804
Score = 113 bits (283), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 46/283 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 406 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 464
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ Y + +K ++ L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 521
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V GD ++L+QIL NL N +KFTS G + ++ + +N+
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLK-------------VTQKNISKSS 568
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+S EF V D+G GIP +KQ +FE F Q +
Sbjct: 569 VS---------------------------IEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 601
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V L G + + K+ GE G F F +
Sbjct: 602 ARKFGGSGLGLSITKQLVELQGGVLKLESKD-GE-GSKFTFTI 642
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 598 DTSTARKFGGSGLGLSITKQLVELQGGV------LKLESKDGEGSKFTFTIDYDIPSALE 651
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V A+S + LV ED+ + L K
Sbjct: 652 IEKILEAEKTKDLEK---SFQDVVAKS-----------TRILVAEDNETNCLLIERALKK 697
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + R + +A +D I+MD MP ++G EAT+ IR + +
Sbjct: 698 LGYDPTVVHNGREVIE---------RMQLEA--FDIILMDIHMPEVDGIEATKWIRSKNQ 746
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ I IIALTA A+ K + GM+ LTKPL
Sbjct: 747 NSEFPI-IIALTADAIESSKEKYISKGMNDCLTKPL 781
>gi|354568007|ref|ZP_08987174.1| PAS/PAC sensor hybrid histidine kinase [Fischerella sp. JSC-11]
gi|353541681|gb|EHC11148.1| PAS/PAC sensor hybrid histidine kinase [Fischerella sp. JSC-11]
Length = 665
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 129/250 (51%), Gaps = 40/250 (16%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA SH++R L +I+G ++ ++D + + E L +I + LL ++N V+EMSKIE
Sbjct: 173 LAAMSHELRTPLNSILGFSQIMYDDTSCNGENREYLDIINRSGQHLLQLINDVLEMSKIE 232
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQI 517
AGK++L E++ +L LL+ + DM K + + + S H+ D KL+Q+
Sbjct: 233 AGKIKLNEKKLDLYSLLDSLEDMLRPKAAAKKLTLNF---ERSPSVPQHIIADESKLRQV 289
Query: 518 LCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDA 577
L NL+SN++KFT G +++R V+ +Q I+
Sbjct: 290 LLNLLSNALKFTQVGSVTLR--VRMGQARQTKIS-------------------------- 321
Query: 578 LHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSM 637
NP L FEV+DTG GI ++ N++FE FVQ ET QEG GLGL I +
Sbjct: 322 ------NPQFL--IFEVEDTGSGIASEETNNLFEAFVQT-ETGKRSQEGTGLGLAISRKF 372
Query: 638 VHLMKGEIAI 647
V LM G+I +
Sbjct: 373 VQLMGGDITV 382
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 30/161 (18%)
Query: 939 SHCSSLQQVAAQSDGKC--SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGK 996
+ + L Q+++Q KC ++P+ + L+V+D+ + +L LG + + NG+
Sbjct: 401 AEMTQLPQLSSQR-VKCLAPDQPI--YRLLIVDDNQDHRQCLIKLLKPLGFEIQQAENGQ 457
Query: 997 EA---FDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE----QYDVH 1049
+ ++ C P+ I MD +MP+M+G+EATR I++ E+ + H
Sbjct: 458 QGIAIWESWC-------------PH-IIFMDMQMPIMDGYEATREIKRREQSSWGDRENH 503
Query: 1050 IP----IIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
+P IIALTA+A ++ AG D ++KP ++++
Sbjct: 504 LPSHTKIIALTAYAFEEQRQVMIAAGCDDFISKPFSEEEIF 544
>gi|317471316|ref|ZP_07930675.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
gi|316901209|gb|EFV23164.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
Length = 640
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 171/387 (44%), Gaps = 72/387 (18%)
Query: 304 KYIFY----------CSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGV 353
+Y++Y C T++ GV S L +SR+ + ++FI +
Sbjct: 43 EYVYYGPIPETEWTVCVTMRSGGVDS------QIESLSGFMSRST-----VAAVLFITAL 91
Query: 354 ISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAII 413
I +G ++ I + L A + A + AE+ ++ K+ L++ SH++R + II
Sbjct: 92 I-MGFSLVYIHLIRRNAELLAAEKNRAEEAFKHAEKANLAKSEFLSRMSHEIRTPMNGII 150
Query: 414 GLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473
G+ + ++ +++ L I SK LL ++N V++MSKIE+GK+E+ E F+
Sbjct: 151 GMTLIAGQNLQNSAKISDCLKKISLSSKHLLALINDVLDMSKIESGKIEIKNEVFDFKVF 210
Query: 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH--VRGDRVKLKQILCNLVSNSMKFTSE 531
+E + +YY + K ++ D ++G + GD ++L QI+ NL+SN++KFT E
Sbjct: 211 IESLTTVYYAQAVSKKLNF-----DTILIGEVREELIGDSLRLNQIITNLLSNAIKFTPE 265
Query: 532 -GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQF 590
G++++R + + L+ F
Sbjct: 266 GGNVTLR----------------------------------------IQELREEDELVWF 285
Query: 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
F+V+DTG G+ + IF F Q G GLGL I + LM G + I +
Sbjct: 286 RFQVEDTGCGVAPENMEKIFNAFEQETSDVAQKYGGTGLGLSISRRFASLMGGSL-ILNS 344
Query: 651 EPGERGVCFRFNVLLTAVCERERPDTD 677
E G +G F ++ +++ P D
Sbjct: 345 EVG-KGSVFTADIPFQISEKKKAPAVD 370
Score = 73.6 bits (179), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 8/132 (6%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
G+ L+ ED+ I ++ ++ GA+ NG+EA + + +D
Sbjct: 514 FTGRHILIAEDNEINREIAVELVAMSGAEVTAVENGEEALN--------IFNASDPGFFD 565
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MD +MPV++G+EA R IR E +PI A+TA+A A K +GMD H+ KP
Sbjct: 566 LILMDIQMPVLDGYEAARKIRSLERPDAGTVPIFAMTANAFAEDMEKSRQSGMDDHINKP 625
Query: 1080 LQKDKLLDVVKS 1091
+ ++L D + S
Sbjct: 626 IDLNELFDKMAS 637
>gi|294828438|ref|NP_714175.2| histidine kinase/response regulator hybrid protein [Leptospira
interrogans serovar Lai str. 56601]
gi|386075620|ref|YP_005989940.1| histidine kinase response regulator hybrid protein [Leptospira
interrogans serovar Lai str. IPAV]
gi|293386292|gb|AAN51193.2| histidine kinase response regulator hybrid protein [Leptospira
interrogans serovar Lai str. 56601]
gi|353459412|gb|AER03957.1| histidine kinase response regulator hybrid protein [Leptospira
interrogans serovar Lai str. IPAV]
Length = 804
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 46/283 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 406 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 464
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ Y + +K ++ L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 521
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V GD ++L+QIL NL N +KFTS G + ++ + +N+
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLK-------------VTQKNISKSS 568
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+S EF V D+G GIP +KQ +FE F Q +
Sbjct: 569 VS---------------------------IEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 601
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V L G + + K+ GE G F F +
Sbjct: 602 ARKFGGSGLGLSITKQLVELQGGVLKLESKD-GE-GSKFTFTI 642
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 598 DTSTARKFGGSGLGLSITKQLVELQGGV------LKLESKDGEGSKFTFTIDYDIPSALE 651
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V A+S + LV ED+ + L K
Sbjct: 652 IEKILEAEKTKDLEK---SFQDVVAKS-----------TRILVAEDNETNCLLIERALKK 697
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + R + +A +D I+MD MP ++G EAT+ IR + +
Sbjct: 698 LGYDPTVVHNGREVIE---------RMQLEA--FDIILMDIHMPEVDGIEATKWIRSKNQ 746
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ I IIALTA A+ K + GM+ LTKPL
Sbjct: 747 NSEFPI-IIALTADAIESSKEKYISKGMNDCLTKPL 781
>gi|341038581|gb|EGS23573.1| histidine kinase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1791
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 150/311 (48%), Gaps = 47/311 (15%)
Query: 372 FLCAALIKQMNATEQAERKSMN-KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLA 430
F A I + E +++M+ K+ L+ SH++R L I G+V +D +
Sbjct: 1026 FGSATDINDLKLLETKLKEAMDSKSRFLSNMSHEIRTPLIGISGMVSFL-QDTTLNEEQR 1084
Query: 431 ENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV 490
+ I+T + LL I+N ++++SK++AG M+L E F+ L+E+V D+ + + K +
Sbjct: 1085 DYTNTIQTSASSLLMIINDILDLSKVDAGMMKLTYEWFHTRSLIEDVNDLVSTMAVAKRL 1144
Query: 491 D----VVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFK 546
+ V D D V+GDRV+++Q+L N++ N++KFT++G
Sbjct: 1145 ELNYVVEEDVPDW-------VKGDRVRIRQVLLNVIGNAIKFTNKG-------------- 1183
Query: 547 QDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQ 606
V S+C ++F ++E +V +PN + EF V DTG+G K +
Sbjct: 1184 --------EVFSRC--RVFVPSRED--------NVRLHPNEIMLEFSVIDTGRGFTKAEA 1225
Query: 607 NSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
IF+ F Q+ ++ G GLGL I + +V L G++ PG +G F F
Sbjct: 1226 ELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKME-GTAVPG-KGSTFTFTAKFG 1283
Query: 667 AVCERERPDTD 677
E + PD +
Sbjct: 1284 LPTETDHPDEE 1294
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 57/172 (33%)
Query: 957 EKPLNGKKF--LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGK 1014
E+ L GK + L+VED+ + KV S L ++G + EV +G+E V GK
Sbjct: 1616 ERRLGGKGYRVLLVEDNPVNQKVLSKYLKRVGVEVEVASDGEECMQLVL---------GK 1666
Query: 1015 ALP-YDYIMMDCEMPVMNGWEATRLIRKEEEQYDV------------------------- 1048
Y I+ D MP +G++A R IR E +
Sbjct: 1667 GWGYYSLILCDLHMPRKDGYQACREIRAWEAKMRQEQEQQHAAQAQQSGDDTQHCTPPET 1726
Query: 1049 --------------------HIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+PIIAL+A+ M+ V K V AG ++TKP+
Sbjct: 1727 TAVKPAPSLESKQPQSSKSRELPIIALSANVMSDVHDKCVAAGFSDYITKPV 1778
>gi|242038337|ref|XP_002466563.1| hypothetical protein SORBIDRAFT_01g010070 [Sorghum bicolor]
gi|241920417|gb|EER93561.1| hypothetical protein SORBIDRAFT_01g010070 [Sorghum bicolor]
Length = 996
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 153/318 (48%), Gaps = 44/318 (13%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGT--DLAENLGLIRTCSKD 442
+QAE + K+ LA SH++R + ++G++++ + T D A+ + C K
Sbjct: 375 KQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQT---AQVCGKA 431
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
L+ ++N V++ +KIEAGK++L F+L +L++V+ ++ +KG+++ +V
Sbjct: 432 LISLINEVLDRAKIEAGKLDLESVPFDLRSILDDVIALFSSKSREKGIEL-------AVY 484
Query: 503 GSCHVR----GDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS-----FKQDIIASN 553
S V GD + +QI+ NLV NS+KFT GHI V+ + S + + +A+
Sbjct: 485 VSERVPEILLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATESEVEPVANG 544
Query: 554 RN----VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFE----------------FE 593
N + + + GF+ D+ +S E LL +E
Sbjct: 545 MNGHKDEKTAVATGVSLNTLSGFEAADSRNSWENFKLLLSYEKNEMPYESVSDKVTLVVS 604
Query: 594 VDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
V+DTG GIP D Q +F F+Q + G G+GL I Q +V LM G+I +
Sbjct: 605 VEDTGIGIPLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISQCLVELMGGQINFVSRP-- 662
Query: 654 ERGVCFRFNVLLTAVCER 671
+ G F F +L C+R
Sbjct: 663 QVGSTFTFTAVLQR-CDR 679
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 33/152 (21%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L GK LVV+D+ + L+V + L K GAK E +GK+A + +PY
Sbjct: 848 LLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALL------------QVPYK 895
Query: 1020 Y--IMMDCEMPVMNGWEATRLIRKEEEQYD-------------------VHIPIIALTAH 1058
+ +MD +MP M+G+EAT+ IR E + + H+P++A+TA
Sbjct: 896 FHLCLMDIQMPEMDGFEATQQIRTMEAKANEQAVACDDSETDGATRAAKWHLPVLAMTAD 955
Query: 1059 AMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
+ + GMD ++TKP ++ +L ++
Sbjct: 956 VIQATHEECTKYGMDGYVTKPFEEKQLFQALQ 987
>gi|167746502|ref|ZP_02418629.1| hypothetical protein ANACAC_01212 [Anaerostipes caccae DSM 14662]
gi|167653462|gb|EDR97591.1| response regulator receiver domain protein [Anaerostipes caccae DSM
14662]
Length = 635
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 171/387 (44%), Gaps = 72/387 (18%)
Query: 304 KYIFY----------CSTLQIAGVQSVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGV 353
+Y++Y C T++ GV S L +SR+ + ++FI +
Sbjct: 38 EYVYYGPIPETEWTVCVTMRSGGVDSQI------ESLSGFMSRST-----VAAVLFITAL 86
Query: 354 ISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAII 413
I +G ++ I + L A + A + AE+ ++ K+ L++ SH++R + II
Sbjct: 87 I-MGFSLVYIHLIRRNAELLAAEKNRAEEAFKHAEKANLAKSEFLSRMSHEIRTPMNGII 145
Query: 414 GLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473
G+ + ++ +++ L I SK LL ++N V++MSKIE+GK+E+ E F+
Sbjct: 146 GMTLIAGQNLQNSAKISDCLKKISLSSKHLLALINDVLDMSKIESGKIEIKNEVFDFKVF 205
Query: 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH--VRGDRVKLKQILCNLVSNSMKFTSE 531
+E + +YY + K ++ D ++G + GD ++L QI+ NL+SN++KFT E
Sbjct: 206 IESLTTVYYAQAVSKKLNF-----DTILIGEVREELIGDSLRLNQIITNLLSNAIKFTPE 260
Query: 532 -GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQF 590
G++++R + + L+ F
Sbjct: 261 GGNVTLR----------------------------------------IQELREEDELVWF 280
Query: 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
F+V+DTG G+ + IF F Q G GLGL I + LM G + I +
Sbjct: 281 RFQVEDTGCGVAPENMEKIFNAFEQETSDVAQKYGGTGLGLSISRRFASLMGGSL-ILNS 339
Query: 651 EPGERGVCFRFNVLLTAVCERERPDTD 677
E G +G F ++ +++ P D
Sbjct: 340 EVG-KGSVFTADIPFQISEKKKAPAVD 365
Score = 73.6 bits (179), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 8/132 (6%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
G+ L+ ED+ I ++ ++ GA+ NG+EA + + +D
Sbjct: 509 FTGRHILIAEDNEINREIAVELVAMSGAEVTAVENGEEALN--------IFNASDPGFFD 560
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MD +MPV++G+EA R IR E +PI A+TA+A A K +GMD H+ KP
Sbjct: 561 LILMDIQMPVLDGYEAARKIRSLERPDAGTVPIFAMTANAFAEDMEKSRQSGMDDHINKP 620
Query: 1080 LQKDKLLDVVKS 1091
+ ++L D + S
Sbjct: 621 IDLNELFDKMAS 632
>gi|215433455|gb|ACJ66693.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
Length = 2476
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 134/279 (48%), Gaps = 42/279 (15%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELC--HEDANPGTDLAENLGLIRTCSKD 442
EQ S K+ LA SH++R L +++ L +L ++D N T E I D
Sbjct: 1763 EQLTVISKYKSEFLANMSHELRTPLNSLLILAKLLSDNKDGNLSTKQVEYANTIYASGGD 1822
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N ++++SK+EAGKM++ + L +L + + + V +KG+D ++ G+
Sbjct: 1823 LLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFIERSFLPVAEQKGLDFAVEVGPGA-- 1880
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEG--HISVRAAVKKKSFKQDIIASNRNVISKC 560
H+R D +L+Q+L NL+SN+ KFT EG + V+ A F +++ +R V+
Sbjct: 1881 -PRHIRTDPQRLQQVLKNLLSNAFKFTDEGSVQLKVKLAEPGTHFDHEVLRRSRYVLG-- 1937
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
F V DTG GI +DKQ IFE F Q +
Sbjct: 1938 -------------------------------FSVVDTGIGIARDKQRLIFEAFQQADGST 1966
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
G GLGL I + + L+ GEI +A EPG RG F
Sbjct: 1967 ARKYGGTGLGLSISREIAKLLGGEIQVA-SEPG-RGSTF 2003
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 14/142 (9%)
Query: 949 AQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSD 1008
AQ K +E L+ KK LVV+DD + ++VL G + NG+ A + +L
Sbjct: 2344 AQRSDKDTE--LSSKKVLVVDDDMRNIFALTSVLENHGMQVVFAENGRAAIE----MLEQ 2397
Query: 1009 LRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV 1068
R D ++MD MP M+G+E R IRK+ +Y +PIIA+TA A+ K +
Sbjct: 2398 HRD------VDIVLMDVMMPEMDGYETMRAIRKDL-KYS-SLPIIAVTAKALKDDREKCM 2449
Query: 1069 DAGMDFHLTKPLQKDKLLDVVK 1090
AG +L KP+ DKLL++++
Sbjct: 2450 AAGASDYLPKPVDTDKLLELIR 2471
>gi|417759883|ref|ZP_12407914.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
2002000624]
gi|417777408|ref|ZP_12425227.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
2002000621]
gi|418674812|ref|ZP_13236110.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
2002000623]
gi|409944278|gb|EKN89864.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
2002000624]
gi|410572783|gb|EKQ35846.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
2002000621]
gi|410578249|gb|EKQ46112.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
2002000623]
Length = 804
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 46/283 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 406 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVEVLSVSA 464
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L E F++ +L+E+ D+ Y + +K ++ L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 521
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V GD ++L+QIL NL N +KFTS G + ++ + +N+
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLK-------------VTQKNISKSS 568
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+S EF V D+G GIP +KQ +FE F Q +
Sbjct: 569 VS---------------------------IEFTVMDSGIGIPLEKQKQVFEAFSQNDTST 601
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + +V L G + + K+ GE G F F +
Sbjct: 602 ARKFGGSGLGLSITKQLVELQGGVLKLESKD-GE-GSKFTFTI 642
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 872 DHVISRPFHGSRL-IEVLKLLPECKGASQRNFPKLKMEASSQELQHCT------DPNPLN 924
D +R F GS L + + K L E +G LK+E+ E T P+ L
Sbjct: 598 DTSTARKFGGSGLGLSITKQLVELQGGV------LKLESKDGEGSKFTFTIDYDIPSALE 651
Query: 925 KLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGK 984
K AE + S Q V A+S + LV ED+ + L K
Sbjct: 652 IEKILEAEKTKDLEK---SFQDVVAKS-----------TRILVAEDNETNCLLIERALKK 697
Query: 985 LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044
LG V NG+E + R + +A +D I+MD MP ++G EAT+ IR + +
Sbjct: 698 LGYDPTVVHNGREVIE---------RMQLEA--FDIILMDIHMPEVDGIEATKWIRSKNQ 746
Query: 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+ I IIALTA A+ K + GM+ LTKPL
Sbjct: 747 NSEFPI-IIALTADAIESSKEKYISKGMNDCLTKPL 781
>gi|330504152|ref|YP_004381021.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina NK-01]
gi|328918438|gb|AEB59269.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina NK-01]
Length = 916
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 95/362 (26%), Positives = 170/362 (46%), Gaps = 56/362 (15%)
Query: 319 SVYVLAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKA---AKREMFLCA 375
S Y LA+ + + L L +L +F A V+ +G+ I LI + A R L
Sbjct: 331 SYYTLAWAILLFAFIQATTGSLGLEVLG-VFGATVVKIGVTIELITLSIGLADRINLLKE 389
Query: 376 ALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL 435
+ A EQA +S K+ LAK SH++R L ++G+++L E D ++ +
Sbjct: 390 EGFQSRRAAEQAAFESQAKSRFLAKMSHEIRTPLNGVLGMLQLLRETP---MDRSQRFYV 446
Query: 436 --IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV 493
I + L+ ++N +++ ++IE+GK+ L + EF+L ++ E + ++ + K + +
Sbjct: 447 DTISSSGSSLMAVINDILDYARIESGKLSLEQIEFDLEDMISETLSLFTGQALDKRLRLY 506
Query: 494 LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553
+ +G ++GD +LKQ+L NL+SN++KFT+EGH++V + + S +
Sbjct: 507 VSLENGV---PRRIQGDPTRLKQVLMNLLSNALKFTAEGHVAVSVSRRSDSHGK------ 557
Query: 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613
P+L+ F V D+G GI + +FE F
Sbjct: 558 -------------------------------PHLV---FAVSDSGIGISEQALAQLFESF 583
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
Q + G GLGL I + +V +M G I + + +G F F++ L + E++
Sbjct: 584 AQGDSSTTRRYGGSGLGLAISKELVEMMGGRIEV--QSTLGQGTRFAFDIPL--LNEQDA 639
Query: 674 PD 675
PD
Sbjct: 640 PD 641
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 78/180 (43%), Gaps = 19/180 (10%)
Query: 913 ELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVA-AQSDGKCSEKPLNGKKFLVVEDD 971
LQH P +N L+ A G Q V +SD N LV ED+
Sbjct: 744 RLQHLAQPVAINALRQ--ALTGLYEEPRAQVHQLVRDIRSDNS------NAPCILVAEDN 795
Query: 972 AIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN 1031
+ V L K G + NG+ A D + I+MDCEMPVM+
Sbjct: 796 PVNQLVVQGFLKKRGYSVRLVTNGQAAVDEYGR---------DPAAVHLILMDCEMPVMD 846
Query: 1032 GWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
G+EATR IR+ E V +PIIALTAH + +DAGMD L KPL L ++
Sbjct: 847 GFEATRQIRRLERSRQVAAVPIIALTAHILEEHRQHGLDAGMDDFLGKPLDSGLLYSTLE 906
>gi|431929976|ref|YP_007243022.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
gi|431828279|gb|AGA89392.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
Length = 750
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 136/292 (46%), Gaps = 43/292 (14%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A EQAE S K+ +A SH++R + ++G++E+ + + L ++R ++
Sbjct: 217 AKEQAEAASQAKSRFVANMSHEIRTPMNGMLGMLEMLSQ-TRLNREQTAALQVVRRSAEG 275
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL +++ ++++SKIE+GK+EL E F++ L EEV ++ KG+++ C +
Sbjct: 276 LLTVIDDILDVSKIESGKLELEEIPFDVRGLTEEVATLFSASARSKGLELA---CFFAPS 332
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
HV GD +L+QIL NL+ N++KFT EG +++R + S +
Sbjct: 333 APAHVCGDPTRLRQILNNLLGNAIKFTHEGEVALRVEEAEASSPE--------------- 377
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
N ++ FEV DTG G+ + +F F Q +
Sbjct: 378 ----------------------ANTVRLRFEVIDTGIGMSAEHMAHLFTPFHQADASTTR 415
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERP 674
G GLGL I +++ LM G+I +A RG F V T E E P
Sbjct: 416 RFGGTGLGLAISKNLARLMGGDIEVASGL--GRGSRFALVVPFTRQGEVEHP 465
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 14/145 (9%)
Query: 938 SSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKE 997
SS + Q+ A S G + PL + L+VED+ I +V +L +LG +V G +
Sbjct: 600 SSTGAPAQRPGAPSAGHGA--PLLRGRVLLVEDNPINQQVALGLLRRLGLTPDVAETGAQ 657
Query: 998 AFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE-QYDVHIPIIALT 1056
+ + YD I+MD +MP M+G+E TR IR E + +PIIA+T
Sbjct: 658 GI-----------AQATSADYDAILMDIQMPDMDGYETTRAIRAWEAVHHRRSVPIIAMT 706
Query: 1057 AHAMAGVASKIVDAGMDFHLTKPLQ 1081
A+ + G + ++AGMD +L KP++
Sbjct: 707 ANTLEGDRERCLEAGMDDYLAKPVR 731
>gi|449518427|ref|XP_004166243.1| PREDICTED: histidine kinase 4-like, partial [Cucumis sativus]
Length = 756
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 150/316 (47%), Gaps = 38/316 (12%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELC--HEDANPGTDLAENLGLIRTCSKDL 443
+AE + K+ LA SH++R + I+G++ L E ++ D A+ + C K L
Sbjct: 125 RAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQT---AQACGKAL 181
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLG 503
+ ++N V++ +KIEAGK+EL F+L +L++V+ ++ KGV++ + D
Sbjct: 182 IALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKV--- 238
Query: 504 SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK---- 559
V GD + +Q++ NLV NS+KFT GHI V+ + ++S I S +V
Sbjct: 239 PEIVMGDPGRFRQVITNLVGNSVKFTEHGHIFVKVQLAEQSMVSTNIKSETHVNGNSEDG 298
Query: 560 -CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFE----------------------VDD 596
+K F GF+ D +S + +L EF+ V+D
Sbjct: 299 ASHNKHQFETLSGFEAADNQNSWDTFKHLANEEFQPNGSSNLMATNEISDIVTVMISVED 358
Query: 597 TGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERG 656
TG GIP Q +F F+Q + + G G+GL I + +V LM G+I K + G
Sbjct: 359 TGIGIPLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQINFVSKP--QVG 416
Query: 657 VCFRFNVLLTAVCERE 672
F F + CE++
Sbjct: 417 STFSFTAVF-GRCEKK 431
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 31/149 (20%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP-- 1017
L GKK LVV+D+ + +V + L K GA E +GK A L+ L+ LP
Sbjct: 608 LCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGKAA-------LALLQ-----LPHS 655
Query: 1018 YDYIMMDCEMPVMNGWEATRLIR----KEEE-------------QYDVHIPIIALTAHAM 1060
+D MD +MP M+G+EATR IR KE E + + H+PI+A+TA +
Sbjct: 656 FDACFMDIQMPEMDGFEATRRIRMMESKENEVLIRESNGKENARKDEWHVPILAMTADVI 715
Query: 1061 AGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ + GMD +++KP +++ L V
Sbjct: 716 HATYDECLKCGMDGYVSKPFEEENLYQAV 744
>gi|413951477|gb|AFW84126.1| putative histidine kinase family protein [Zea mays]
Length = 1007
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 165/332 (49%), Gaps = 30/332 (9%)
Query: 352 GVISLGLFIILIAKAAKREMFLCAALIKQMNA-TEQAERKSMNKTFALAKASHDVRASLA 410
G + + L I I A + + ++M+ ++AE + K+ LA SH++R +
Sbjct: 380 GTLVIALLIGYIIYATAKRIARVEDDFQEMSVLKKRAEDADIAKSQFLATVSHEIRTPMN 439
Query: 411 AIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNL 470
++G++++ D + T + + + K L+ ++N V++ +KIE+GK+EL F+L
Sbjct: 440 GVLGMLQMLM-DTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEAVPFDL 498
Query: 471 AQLLEEVVDMYYHVGIKKGVDV---VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMK 527
+ ++++ ++ +KG+++ V D +++G D +++QI+ NLV NS+K
Sbjct: 499 RTVCDDILSLFCGKAQEKGLELAVFVSDQVPQALIG------DPGRIRQIITNLVGNSIK 552
Query: 528 FTSEGHISVRAAVKKK---SFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERN 584
FT +GHI + V ++ + + + N +S R+ E F + S E N
Sbjct: 553 FTEKGHIYLTVHVVEEIMNCLEVETGTQSANTLSGYPVANRKRSWENF----RVFSRELN 608
Query: 585 PNLLQFE----------FEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIV 634
+ + F V+DTG GIP D Q+ +F F+QV + G G+GL I
Sbjct: 609 SSEMPFAPIASDSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSIS 668
Query: 635 QSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
+ +V LM+GEI A K + G F F +LT
Sbjct: 669 KCLVGLMRGEIGFASKP--QVGSTFTFTAVLT 698
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 27/143 (18%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L+ K+ LVV+D+ + LKV + L K GA+ +GK+A + S +D
Sbjct: 860 LHKKRILVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITQLKPPHS----------FD 909
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHI-----------------PIIALTAHAMAG 1062
MD +MP M+G+EAT+ IR E + I PI+A+TA +
Sbjct: 910 ACFMDIQMPEMDGFEATKRIRVMERDLNEQIERGEAPPECAGLRQWRTPILAMTADVIQA 969
Query: 1063 VASKIVDAGMDFHLTKPLQKDKL 1085
+ + + MD +++KP + ++L
Sbjct: 970 THEQCLKSEMDGYVSKPFEGEQL 992
>gi|121705970|ref|XP_001271248.1| sensor histidine kinase/response regulator, putative [Aspergillus
clavatus NRRL 1]
gi|119399394|gb|EAW09822.1| sensor histidine kinase/response regulator, putative [Aspergillus
clavatus NRRL 1]
Length = 2333
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 135/299 (45%), Gaps = 64/299 (21%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
K+ LA SHD+R + +IGL EL + N + E + IR C+ LL ++N +++
Sbjct: 1888 KSIFLANISHDLRTPMNGVIGLSELL-KGTNLNKEQDEYVESIRVCADTLLTLINDILDF 1946
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD----PCDGSVLGSCHVRG 509
SK+EAGKM++ N+ + + EVV + +G++ + D P D VL G
Sbjct: 1947 SKLEAGKMKISTVPLNIRETISEVVRALRYTHRDRGLETIEDLDKVPPDLVVL------G 2000
Query: 510 DRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNK 569
D V+L QI NL+SNS KFT +G I+VRA V ++
Sbjct: 2001 DPVRLHQIFMNLLSNSYKFTPKGSITVRAKV---------------------------SR 2033
Query: 570 EGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629
EG L+ E V DTG GIP+++++ +F+ F Q + G GL
Sbjct: 2034 EG-------------KGRLRLECAVSDTGIGIPEEQKSRLFKPFSQADSSTARSYGGSGL 2080
Query: 630 GLGIVQSMVHLMKGEIAIADKEPG-ERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDW 687
GL I ++++ + G D PG V FR + + +DP T W
Sbjct: 2081 GLSICKAIIEDVLGGAIWLDSTPGVGTTVTFRLSF------------SKAKDPLTATPW 2127
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
P + + + ED+ I K+ + L + E +G +A + L +EG +P+
Sbjct: 2149 PRDQIRVCIAEDNPINQKIAVKFVTGLKLQCEAYSDGLQAVE----ALRARSREG--IPF 2202
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
++MD +MP ++G+ ATR IRK+ + + +IA+TA A+ G K ++AGM+ +L K
Sbjct: 2203 HVVLMDVQMPTLDGYNATREIRKDPDPNVNEVLVIAMTASAIEGDREKCLEAGMNNYLPK 2262
Query: 1079 PLQKDKLLDVV 1089
P++ L +++
Sbjct: 2263 PVRSTVLSEML 2273
>gi|186685940|ref|YP_001869136.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186468392|gb|ACC84193.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1575
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 137/267 (51%), Gaps = 22/267 (8%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E AE + +K+ LA SH++R L AI+G +L D ++L I +
Sbjct: 1079 AKETAETANRSKSAFLANMSHELRTPLNAILGFAQLMERDTTLNKRQRDSLATINRSGEH 1138
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL ++N V+EMSKIEAG++ L F+L +LL+E+ M+ K + + +
Sbjct: 1139 LLNLINDVLEMSKIEAGRIVLNPTSFDLHRLLQEMQQMFQVRAKDKKLSLSFELAPNL-- 1196
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
++ D KL+Q+L NL+ N++KFT+ G +++R ++ +R ++ LS
Sbjct: 1197 -HQYILTDESKLRQVLINLLGNAIKFTNTGGVTLRVSLGIGE------QGSRGEVALSLS 1249
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
L L V + +L+ F+ E DTG GIP ++ +++F+ FVQ TA
Sbjct: 1250 PLPLCPSA------PLPLVPNSQSLISFKIE--DTGLGIPTEELDNLFQPFVQ---TASA 1298
Query: 623 HQ--EGLGLGLGIVQSMVHLMKGEIAI 647
Q EG GLGL I + V LM G+I +
Sbjct: 1299 RQVMEGTGLGLTISRQFVQLMGGDIRV 1325
Score = 45.8 bits (107), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D + + + +G + + NG+EA + I M
Sbjct: 1369 RILIVDDREDNCDLLTQLFNSIGFETQAAANGQEAI-----------ALWQTWEPHLIFM 1417
Query: 1024 DCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MPVM+G+EAT+ IR + Q V IIALTA A ++ AG + + KP ++
Sbjct: 1418 DMRMPVMDGYEATKQIRATLKGQATV---IIALTASAFDEERFVVLSAGCNDFVRKPFRE 1474
Query: 1083 DKLLDVV 1089
+ +L+++
Sbjct: 1475 EVILNII 1481
>gi|262402984|ref|ZP_06079544.1| hypothetical protein VOA_000965 [Vibrio sp. RC586]
gi|262350483|gb|EEY99616.1| hypothetical protein VOA_000965 [Vibrio sp. RC586]
Length = 1586
Score = 113 bits (282), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 134/271 (49%), Gaps = 44/271 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTD--LAENLGLIRTCS 440
A AE+ + K+ LA SH++R L AI+GL L +++ + L + +G+
Sbjct: 831 ALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESLTESQHRLVDKIGI---SG 887
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LLGI+N V+++SKIEA +M L +L + LEEV ++ K +D L+ G+
Sbjct: 888 KSLLGIVNDVLDLSKIEANEMILEALPLDLKEFLEEVASVFSTQAEAKNLDFKLEM--GA 945
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
L V D ++L+QIL NL+SN++KFTS GHI++R V K F + + +N++
Sbjct: 946 DLPHW-VIADSMRLRQILTNLLSNALKFTSVGHIALRVEVIDK-FSWN--GAEKNIV--- 998
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
F + DTG GI ++ Q +F+ F Q +
Sbjct: 999 ------------------------------RFSITDTGIGISEEAQKRLFKPFSQADTST 1028
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651
G GLGL IV ++ LM+G+I + E
Sbjct: 1029 SRRFGGTGLGLSIVHKLLGLMEGKIGVESSE 1059
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 922 PLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKC-SEKPLNGKKFLVVEDDAIVLKVTSA 980
P+N F A +++S H + +V + + K L G + LVV+D A L+V
Sbjct: 1199 PINASAVFNA-VNSAVSQHSGNANRVLLSTRTEAIKAKWLLGFRVLVVDDSATNLEVADY 1257
Query: 981 VLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040
VL + GA V +G+EA ++ L+++ + YD ++MD +MP M+G E TR IR
Sbjct: 1258 VLTQAGATTNVVASGEEA-------INKLKQQNE---YDAVLMDVQMPGMDGLETTRYIR 1307
Query: 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKS 1091
+ + +PIIALTA A+ + +GM+ LTKP+ +L+ V+++
Sbjct: 1308 NTLKLHS--LPIIALTAGALVEERKRAFASGMNDFLTKPISPSRLISVLRT 1356
>gi|386827297|ref|ZP_10114404.1| PAS domain S-box [Beggiatoa alba B18LD]
gi|386428181|gb|EIJ42009.1| PAS domain S-box [Beggiatoa alba B18LD]
Length = 748
Score = 113 bits (282), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 131/275 (47%), Gaps = 50/275 (18%)
Query: 375 AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA--NPGTDLAEN 432
AAL K A E+AE+ + K+ LA SH++R L AIIG E+ ED G L +
Sbjct: 231 AALFK---AKEEAEQANRAKSAFLANMSHELRTPLNAIIGYSEILQEDLVDMEGEALIPD 287
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
+ I K LLG++N V+++SKIEAGKM++ E F+L L++EVV + KK +
Sbjct: 288 VKKIHAAGKHLLGLINDVLDLSKIEAGKMDIFTETFDLGSLVQEVVSTITPLIQKKENTL 347
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
+D CD LG+ H D K++Q+L NL+SN+ KFT +G I
Sbjct: 348 KVDACDP--LGNLH--ADLTKVRQMLFNLLSNAAKFTEQGQI------------------ 385
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
+L R +E DLD + F V D G G+ ++ +F+
Sbjct: 386 ----------RLTIR-RESRADLDWVI------------FSVTDQGIGMTHEQIEKLFQP 422
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
F Q + G GLGL I + +M G + +
Sbjct: 423 FTQADSSTTRKYGGTGLGLTITKRFAEMMGGGVIV 457
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 928 SFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGA 987
+F A + +H S +++ ++ + P N + LV++DDA+V ++ +GKLG
Sbjct: 466 TFSIHLPAYVITHAS--EKLLGKNPKAINRTPSN--QVLVIDDDAVVRELLQNYIGKLGY 521
Query: 988 KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYD 1047
+ +G + K + + D I +D MP M+GW ++ + D
Sbjct: 522 RVTTADSGDQGL-----------KLAREIKPDAITLDVMMPGMDGWMVLSALKNDPVLAD 570
Query: 1048 VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
IP+I L +M S G ++TKP+ +D+L
Sbjct: 571 --IPVIVL---SMVEEKSLGYSLGATEYITKPIDRDQL 603
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L+VEDD + + S L K G + E NGK A D + RK + I+ D
Sbjct: 619 LLLVEDDKVTQDMISNQLKKAGWQVETADNGKLALDLLAT-----RKP------NLILSD 667
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTA 1057
MP M+G+E R IR+ E D IPII LTA
Sbjct: 668 LMMPEMDGFELIRRIRETPEIAD--IPIIVLTA 698
>gi|296120946|ref|YP_003628724.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
gi|296013286|gb|ADG66525.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
Length = 1322
Score = 113 bits (282), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 68/262 (25%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRTCSKDLLGILNSVMEM 453
LAK SH++R L +IG+++L T L + + + R+ + LLG++N ++++
Sbjct: 614 LAKMSHEIRTPLNGVIGMLDLLK-----ATSLDDRQKRYVTICRSSADTLLGLINDILDL 668
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH------- 506
SKIEAG+MEL +F+L QL+E++ +M+ H KGV++ +CH
Sbjct: 669 SKIEAGRMELALVDFDLHQLVEDISEMFVHRAEGKGVEL-----------ACHIAPDVPQ 717
Query: 507 -VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
+ GD +L+QIL NLV N++KFTS G++ + K S Q +R
Sbjct: 718 RIEGDPERLRQILVNLVGNALKFTSVGYVLI-----KVSMAQSPTGEHR----------- 761
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
+ V DTG GI +Q +F+ F Q T
Sbjct: 762 ------------------------LQIHVKDTGIGISPAQQQKLFQPFTQADVTTSRRFG 797
Query: 626 GLGLGLGIVQSMVHLMKGEIAI 647
G GLGL I + + LM+G I I
Sbjct: 798 GTGLGLSICRQLADLMQGSIQI 819
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 13/144 (9%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
SE + L+ +D+ + L VT+ ++ LG E +G + + K+
Sbjct: 992 SETKTPSARILIADDNEVNLIVTTELVRSLGFDTETAADGSIVLEKL-----------KS 1040
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYD--VHIPIIALTAHAMAGVASKIVDAGMD 1073
YD I+MDC+MP ++G+E TR IR+ E+Q HIPI+ALTA+A+ G + AGMD
Sbjct: 1041 QTYDLILMDCQMPTLDGFETTRKIREIEKQAQNGEHIPIVALTANAIQGDNDRCRQAGMD 1100
Query: 1074 FHLTKPLQKDKLLDVVKSIDETME 1097
+LTKP+ +L + + I T +
Sbjct: 1101 GYLTKPIDHAQLSNTLLQILTTHQ 1124
>gi|114566853|ref|YP_754007.1| signal transduction histidine kinase-like protein [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114337788|gb|ABI68636.1| PAS/PAC sensor hybrid histidine kinase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 763
Score = 113 bits (282), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 137/283 (48%), Gaps = 46/283 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E AE + K LA SH++R L AIIG+ L +NP D ENL +I+
Sbjct: 269 AKEAAEVANRAKAEFLANMSHEIRTPLNAIIGMTSLSLL-SNPEPDQKENLEIIKMAGDT 327
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL I++++++ SKIEAGK+ + + FNL +L+E+ + ++ +KG+ ++L D ++
Sbjct: 328 LLSIIDNILDFSKIEAGKLTVEKINFNLHELIEKNITIHKARAQEKGL-LLLYYIDPAI- 385
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
V GD +L+Q+ NL+ N++KFT G + VR + DI
Sbjct: 386 -PVQVNGDPYRLQQVFNNLIGNAIKFTDHGEVEVRLKL------LDI------------- 425
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
FDD L + V DTG+GI +Q +FE F Q +
Sbjct: 426 ---------FDDHIVLQA------------SVADTGRGITAGQQEKMFESFYQGDSSISR 464
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + +V +M+G+I + + E G F F V L
Sbjct: 465 TYGGTGLGLNISKKIVEMMQGKIWL--ESDIESGSTFYFTVEL 505
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 81/164 (49%), Gaps = 13/164 (7%)
Query: 929 FGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAK 988
F E G SS + A + P LVVED+ + V S +L G +
Sbjct: 501 FTVELGIPESSKLEAESNQAINQKADTEKNP--SLFILVVEDNEVNQMVLSNLLRSQGHQ 558
Query: 989 FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDV 1048
EV NG EA + + K YD + MD MPVM+G E TR IR++EE
Sbjct: 559 VEVAANGVEALELLDKN-----------NYDLVFMDILMPVMDGLETTRRIREQEEITGF 607
Query: 1049 HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
HIPIIA+TAHA+ G K + AGMD +L KP+Q ++L + I
Sbjct: 608 HIPIIAITAHAIHGDREKFLAAGMDDYLAKPVQMEELNQAISKI 651
>gi|41016070|dbj|BAD07401.1| histidine kinase [Cochliobolus heterostrophus]
Length = 359
Score = 113 bits (282), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 155/333 (46%), Gaps = 68/333 (20%)
Query: 375 AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLG 434
A I+ M E+A + K+ LA SH++R L +IG+ EL A+P E G
Sbjct: 4 ANAIRNMKLKEEAAKA---KSLFLANVSHELRTPLNGVIGMSELLK--ASPLN--GEQSG 56
Query: 435 L---IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD 491
IR C+ LL I+N +++ SK+EAGKM ++E +L + + EVV + ++G+
Sbjct: 57 YADSIRVCADTLLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLK 116
Query: 492 VV----LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFK- 546
+ LDP V GD V+L QIL NL+SNS KFT G ++VRA V +++ +
Sbjct: 117 TIEQLELDP-------EMLVMGDPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDQETSEW 169
Query: 547 QDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQ 606
D+ S V DTG GIP +++
Sbjct: 170 ADVTCS-----------------------------------------VIDTGIGIPDEQK 188
Query: 607 NSIFEEFVQVKETALGHQEGLGLGLGIVQSMV-HLMKGEIAIADKEPGE-RGVCF--RFN 662
+F F Q++ ++ G GLGL I ++++ ++M G + + D +PG+ V F RF
Sbjct: 189 QKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRL-DSQPGKGTTVTFSLRFK 247
Query: 663 VLLTAVCERERPDTDEEDPRTHNDWPQTGLHQH 695
+ A ++ + E DP + H+H
Sbjct: 248 KVPKARAGDQQQRSREPDPMARFSSQENNGHEH 280
>gi|424043137|ref|ZP_17780777.1| his Kinase A domain protein [Vibrio cholerae HENC-03]
gi|408889441|gb|EKM27858.1| his Kinase A domain protein [Vibrio cholerae HENC-03]
Length = 787
Score = 113 bits (282), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 153/332 (46%), Gaps = 63/332 (18%)
Query: 325 YDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMN-- 382
Y + L + R +L+ + ++L I+ V +F++ + +KQ+N
Sbjct: 207 YSEHQLLEIAQREGRLTWVFVLLSIISLV---AVFVLQTQHRVNK--------LKQLNDD 255
Query: 383 ---ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTC 439
ATE+AER + K+ LA SH++R + ++G+ ++ + + E++ +I
Sbjct: 256 LTEATEKAERAAKAKSQFLATMSHELRTPMNGVLGISQIIASETKE-RETKEHVQVILDS 314
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
+ L+ ILN +++ SK+E K+EL FNL Q+L V + +K + + ++
Sbjct: 315 GQHLMTILNDILDFSKVEENKLELEAAPFNLPQVLTPVCSAIQPLIEEKNIQLYVE---N 371
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
V + GD +++QIL NL N++KFTS+GH+ +RA
Sbjct: 372 EVPENIEFNGDCARIRQILFNLADNAVKFTSDGHVLIRA--------------------- 410
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
+LD E+ LL ++DTG GIP DKQ+ IF F Q +
Sbjct: 411 --------------ELD-----EQRKRLL---LSINDTGIGIPADKQDRIFNSFEQADTS 448
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651
G GLGL IV+ + LM GE+ + E
Sbjct: 449 TTRKFGGTGLGLAIVKKLTELMGGEVKLKSVE 480
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 64/144 (44%), Gaps = 14/144 (9%)
Query: 948 AAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILS 1007
AA + K + L+ ED+ + V KLG E+ NG A
Sbjct: 502 AADTKVKVQRENKRNLHILLAEDNRVNAIVAKGFCEKLGHTVEIAENGLIA--------- 552
Query: 1008 DLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKI 1067
K+ + YD I+MD MP MNG EATR IR E+ V+ + A TA
Sbjct: 553 --TKKAQENQYDLILMDNHMPEMNGVEATRFIR---EKLGVNTLLFAYTADVFREAHDNF 607
Query: 1068 VDAGMDFHLTKPLQKDKLLDVVKS 1091
++AG D LTKPLQ++ D +K
Sbjct: 608 IEAGADHVLTKPLQRESFADALKQ 631
>gi|388471186|ref|ZP_10145395.1| sensory box histidine kinase/response regulator [Pseudomonas
synxantha BG33R]
gi|388007883|gb|EIK69149.1| sensory box histidine kinase/response regulator [Pseudomonas
synxantha BG33R]
Length = 1210
Score = 113 bits (282), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 136/279 (48%), Gaps = 45/279 (16%)
Query: 377 LIKQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL 435
LI+Q+ A QA+ S KT LA SH++R ++A+IG +EL + A+ G N+ +
Sbjct: 699 LIEQLQQAKTQADEASRAKTQFLATMSHEIRTPMSAVIGTLELALKRADHGVLDRVNIDV 758
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
T +K+LL +L + +++ +IE+G + NL L+E V ++ + KK +D++L+
Sbjct: 759 AYTAAKNLLELLGNTLDIVRIESGHLSFSPRRANLKNLVEMVARVFEGLARKKKLDLILE 818
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
G+ L V D ++ KQ+L NLVSN++KFT G I +R
Sbjct: 819 IDAGTTL---DVSIDPLRFKQVLSNLVSNAIKFTERGRIVIR------------------ 857
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
++ + L N L +V DTG GI + + ++F F Q
Sbjct: 858 LVCRVL----------------------NGQTLNMHLQVQDTGIGISEADRQTLFRPFAQ 895
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE 654
V ++ L G GLGL + +S+ +M G + + PG+
Sbjct: 896 VIQSDLSVHGGSGLGLVVSRSLCEMMGGRLELTST-PGQ 933
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
P + L+ +D+ + ++ A L LG K NG EA + +A P
Sbjct: 964 PSWAMRVLIADDNTLNRQMLRAQLEYLGCKVIEASNGLEALE-----------AWRAFPV 1012
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASKIVDAGMDFHLT 1077
D+++ D MPVM+G E T IRKEE+Q + + I+ LTA A + ++AGM L
Sbjct: 1013 DWLITDYHMPVMDGVELTLAIRKEEQQRNASALTILGLTADAQQEEMDRCLNAGMGDCLI 1072
Query: 1078 KPL 1080
KP+
Sbjct: 1073 KPI 1075
>gi|428311152|ref|YP_007122129.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428252764|gb|AFZ18723.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 686
Score = 113 bits (282), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 32/269 (11%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA SH++R L AI+G ++ D T+ E L +I + LL ++N V+++SKIE
Sbjct: 169 LANMSHELRTPLNAILGFTQVMSRDLQLSTEQREYLRIINRSGEHLLDLINDVLDLSKIE 228
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-PCDGSVLGSCHVRGDRVKLKQ 516
AG L E F+L +LL+ + +M +K + ++ + P + +++ D KL+
Sbjct: 229 AGLSTLHESSFDLYRLLDSLEEMLQIKAEQKKIKLIFNIPSN----VPQYIKTDPKKLRI 284
Query: 517 ILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLD 576
L NL+ N++KFT G +++R ++ ++D + ++ + C S D
Sbjct: 285 CLINLLGNAIKFTDNGTVTLRVNTGLETAEKD---TEKSRWTLCPSS----------DFQ 331
Query: 577 AL--HSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIV 634
+L H++ FEV+DTG GI + +F+ FVQ ET EG GLGL I
Sbjct: 332 SLFPHTI---------HFEVEDTGPGIAPAEMTDLFDAFVQT-ETGRKFSEGTGLGLAIT 381
Query: 635 QSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ V LM GEI I+ GE G F+F++
Sbjct: 382 RKFVQLMGGEIQISSVL-GE-GAIFKFDI 408
Score = 44.7 bits (104), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+V+D L++ SA L + G K GK A + K+ P D I++D
Sbjct: 14 LIVDDTPENLQILSATLSERGYKVRGVVKGKMAL-----------RAAKSAPPDLILLDI 62
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
MP M+G+E ++ E + + IP+I ++A K G ++TKP Q ++
Sbjct: 63 RMPEMDGYEVCSQLKAEPKTRE--IPVIFISALDEVLDKIKAFAVGGADYITKPFQVAEV 120
Query: 1086 LDVVK 1090
L V+
Sbjct: 121 LARVE 125
>gi|261406146|ref|YP_003242387.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
sp. Y412MC10]
gi|261282609|gb|ACX64580.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
sp. Y412MC10]
Length = 1004
Score = 113 bits (282), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 133/287 (46%), Gaps = 52/287 (18%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLI 436
+ A E AER KT L SH++R + IIG++EL T+L E+ + ++
Sbjct: 754 IRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLST-----TELDEDQQNYIHIL 808
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
S LL ILN +++ SKIE G M L E +L LLE VVD++ +KG+ + +
Sbjct: 809 MESSGSLLHILNEILDFSKIETGNMTLNHEPIDLRSLLEVVVDLFSAKAKEKGLSLSFNI 868
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
+V + GD ++L+Q+L NL+SN++KFT EG I++ +++ Q+ +
Sbjct: 869 NSANVPDV--IIGDALRLRQVLVNLISNAIKFTHEGSITLNVEGLRRTGTQEFTLA---- 922
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
F+V DTG GI + Q+ +F F Q+
Sbjct: 923 -----------------------------------FQVKDTGIGIAPELQHQLFTSFSQL 947
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ G GLGL I + +V LM G I + +E G F F +
Sbjct: 948 HPSLNRKYGGTGLGLAISKKLVELMGGVIGVESRE--NVGSSFYFTI 992
>gi|260770504|ref|ZP_05879437.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP
102972]
gi|260615842|gb|EEX41028.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP
102972]
Length = 807
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 130/269 (48%), Gaps = 45/269 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
+A QAE +M K+ ++ SH++R + +I+G+ L +N D +L I K
Sbjct: 460 DAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLLMT-SNLSDDQRNHLITIDKSGK 518
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N +++MSKI+AGK+++ E F+LA L+ +V D++ + K GV + LD D S+
Sbjct: 519 HLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYDVHDIFEYKAKKHGVKLHLD-LDKSL 577
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+ GD ++KQI+ N VSN++KFT +G +++R Q + S
Sbjct: 578 ---PPLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRV--------QGAVTSE-------- 618
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
++ V+D G G+ D Q +FE F Q +
Sbjct: 619 ------------------------SVFALRLSVEDNGIGLSTDDQMKVFESFQQADASTT 654
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
G GLGL I + + HLM GE+ + +
Sbjct: 655 RKYGGTGLGLAICKRIAHLMGGEVGVESR 683
>gi|254413254|ref|ZP_05027025.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196179874|gb|EDX74867.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1658
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 137/288 (47%), Gaps = 45/288 (15%)
Query: 376 ALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL 435
A I A E A+ + K+ LA SH++R+ L AI+G +L +NL +
Sbjct: 1172 AEIALQEAKEAADAANRAKSTFLANMSHELRSPLNAILGFAQLMSNSVTLPQQYQDNLRI 1231
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
I + LL ++N V+++SKIEAG++ L E FNL LL EV DM+ +KG+ +
Sbjct: 1232 IHHSGEHLLTLINQVLDLSKIEAGRITLNETTFNLHHLLGEVEDMFRLKVNEKGLQLRF- 1290
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
+ + ++ D +KL+Q+L NLVSN++KFTS G + + A ++
Sbjct: 1291 --NWAADVPATIQTDEIKLRQVLINLVSNAVKFTSAGSVVMNVAQQRT------------ 1336
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
N +G + FE+ DTG GI D+ SIFE FVQ
Sbjct: 1337 ------------NDDG---------------RMTLYFEIKDTGCGIAADELESIFEAFVQ 1369
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ Q G GLGL I + + LM GEI + + +G F F++
Sbjct: 1370 SQSGVQ-SQSGTGLGLPITRKFIQLMGGEIRVESQ--VSQGTTFTFDI 1414
>gi|427713659|ref|YP_007062283.1| signal transduction histidine kinase [Synechococcus sp. PCC 6312]
gi|427377788|gb|AFY61740.1| signal transduction histidine kinase [Synechococcus sp. PCC 6312]
Length = 960
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 137/289 (47%), Gaps = 51/289 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP--GTDLAENLGLIRTCS 440
A EQAE + K+ +A SH++R L AIIG E+ +DA DL ++L I
Sbjct: 449 AMEQAEAANKAKSSFMANMSHELRTPLNAIIGYSEMLQDDAEDVGADDLIDDLKKIEGAG 508
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LLG++N V+++SKIEAG+MEL E+F+LA +++EV+ + K ++ ++ D
Sbjct: 509 KHLLGLINDVLDLSKIEAGRMELFLEDFDLAPMIQEVIATIQPLVEKNHNNLQVEMSDN- 567
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
LG+ H D K++Q L NL+SN+ KFT G + C
Sbjct: 568 -LGAMH--SDVTKIRQCLFNLISNASKFTDNGTV-------------------------C 599
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
L+ R EG D+D + V D+G G+ ++Q +F+ F Q +
Sbjct: 600 LT--VNRTNEG--DVDWII------------MRVKDSGIGMTSEQQAKLFQAFTQADAST 643
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVC 669
G GLGL I + ++ G I + + GV F + L A+
Sbjct: 644 TRKFGGTGLGLSITKKFCQMLGGTINV----DSQYGVGSTFTIRLPAIL 688
>gi|225419781|ref|ZP_03762084.1| hypothetical protein CLOSTASPAR_06119 [Clostridium asparagiforme
DSM 15981]
gi|225041585|gb|EEG51831.1| hypothetical protein CLOSTASPAR_06119 [Clostridium asparagiforme
DSM 15981]
Length = 938
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 99/351 (28%), Positives = 170/351 (48%), Gaps = 69/351 (19%)
Query: 332 SLVSRNNKLSLMLLVLMF-IAGVISLGLFIILI-------AKAAKREMFLCAALIKQMNA 383
SLVSR ++ + ++ +A V +G+ +IL+ A+ R + A L
Sbjct: 501 SLVSRAYAMTTVDMIYANPMAFVTVIGVILILVMAMVLLTARGRMRSAIMQAEL------ 554
Query: 384 TEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDL 443
E+AE +S K+ L+K SH++R + AI+G+ EL ++ + + L IR+ S+ L
Sbjct: 555 -EKAEARSTAKSDFLSKMSHEIRTPMNAIVGMTELVSMESGLSPETRDKLEKIRSSSRYL 613
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLG 503
L ++N +++MS+IE+G + + EE F+L ++LEEV + ++G+ + C ++
Sbjct: 614 LSLINDILDMSRIESGNLSINEEAFSLREILEEVESIISGQAQQRGLAL---ECVRNI-- 668
Query: 504 SCH-VRGDRVKLKQILCNLVSNSMKFTSEG---HISVRAAVKKKSFKQDIIASNRNVISK 559
C + GD ++L+Q+L NL+ NS+KFT G +SV+A
Sbjct: 669 DCDWLTGDPIRLRQVLLNLLGNSVKFTPTGGLLQLSVQA--------------------- 707
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
C G + +A+ ++F V DTG GI + Q IF F Q+
Sbjct: 708 C----------GMEGQEAV-----------YDFSVRDTGVGISHEDQERIFRPFEQLGGN 746
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
L G GLGL I +++V M GE+ + + + G +G F F + E
Sbjct: 747 EL-KSLGTGLGLPISRNLVRSMGGELTL-ESDTG-KGAVFSFRLRFKPAGE 794
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G + LV ED+ + ++ +L GA E ++G EA + L G+ Y
Sbjct: 810 LKGMRILVTEDNDLNAEIAQELLALQGAVTERAKDGSEALE-----LFQRNPPGR---YQ 861
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
I+MD MPVM+G ATR IR + IPI+A+TA++ + AGM+ + KP
Sbjct: 862 MILMDIRMPVMDGLAATRAIRALKRPDAAGIPIVAMTANSFKEDEEAAMSAGMNGFIPKP 921
Query: 1080 LQKDKLLDVVKSI 1092
+ +L +V++ +
Sbjct: 922 VNVQQLFEVLEEL 934
>gi|456876836|gb|EMF91898.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
ST188]
Length = 821
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 44/293 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 424 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVKILSVSA 482
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L +E F++ +L+E+ D+ Y + +K + + L +G
Sbjct: 483 KSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHDLLYPLAKQKQIGLRL---EGK 539
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+V GD+++L+QIL NL N +KFT+ G + +++ ++ ISK
Sbjct: 540 FDIQEYVYGDQLRLRQILWNLTGNGIKFTNHGEV--------------VLSVSQENISK- 584
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
N + F V D+G GIP +KQ +F+ F Q +
Sbjct: 585 -------------------------NNISIGFSVSDSGIGIPLEKQKQVFDAFSQSDTST 619
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL I + +V L G + + KE F + + E ER
Sbjct: 620 ARKFGGSGLGLSITKQLVELQGGTLNLESKEGFGSKFTFAITYDIPSESEIER 672
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 61/120 (50%), Gaps = 12/120 (10%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
NG K LV ED+ + L KLG V RNG+E + K+ D +D
Sbjct: 692 NGMKILVAEDNETNCLLIERALKKLGYDPVVVRNGREVIE---KMQLDF--------FDL 740
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MD MP ++G EAT+ IR +++ + I IIALTA + + GM+ LTKPL
Sbjct: 741 ILMDIHMPEVDGIEATKWIRSQKQNAEFPI-IIALTADVIESNKEIYISKGMNDCLTKPL 799
>gi|410862532|ref|YP_006977766.1| sensory box histidine kinase/response regulator [Alteromonas
macleodii AltDE1]
gi|410819794|gb|AFV86411.1| sensory box histidine kinase/response regulator [Alteromonas
macleodii AltDE1]
Length = 1070
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 139/283 (49%), Gaps = 53/283 (18%)
Query: 384 TEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCH---EDANPGTDLAENLGLIRTCS 440
T+ + + K+ LA+ SH++R L AIIGL +L ED T+L + I S
Sbjct: 424 TQDLRKATKAKSDFLARMSHEIRTPLNAIIGLTKLSQRAAEDKEQQTNLIQ----IEGAS 479
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL I+N +++ SKIEAGK+++ +FNL L+ + + ++ +K ++++
Sbjct: 480 QTLLSIINDILDFSKIEAGKLDIESTQFNLDALVNQTIRLHLARAQEKHIELIQHISRDV 539
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
L ++ GD ++++Q+L NL+SN++KFT +G ISV +V+ K +DI
Sbjct: 540 PL---NLIGDPLRIQQVLNNLLSNALKFTEDGLISV--SVRCKQVSEDI----------- 583
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
Q EFEV D+G G+ Q +F+ F Q ET
Sbjct: 584 ----------------------------QLEFEVKDSGVGLSSAHQALLFQPFNQGDETI 615
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I + + LM GEI + + + G +G F F V
Sbjct: 616 SRRYGGTGLGLAICKQLTALMGGEIWV-ESQLG-KGSIFHFTV 656
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 73/130 (56%), Gaps = 13/130 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G + L ED+A+ KVT +L A EV NG EA +S LRK+ +D
Sbjct: 816 LKGTRILFAEDNALNQKVTLGLLSDTHATIEVANNGLEA-------ISILRKDS---AFD 865
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MPVM+G A + IR E+ + +PIIA TAHAM K + AGMD H+ KP
Sbjct: 866 VVLMDIQMPVMDGLTAAKHIR---EELKLTLPIIATTAHAMQQDIDKSLAAGMDGHINKP 922
Query: 1080 LQKDKLLDVV 1089
+ ++ DV+
Sbjct: 923 VDPNRFFDVL 932
>gi|410449547|ref|ZP_11303602.1| 7TM diverse intracellular signaling [Leptospira sp. Fiocruz LV3954]
gi|410016772|gb|EKO78849.1| 7TM diverse intracellular signaling [Leptospira sp. Fiocruz LV3954]
Length = 821
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 44/293 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE+ S K+ LA SH++R + ++G+V+L + E + ++ +
Sbjct: 424 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG-TTKLNDEQKEYVKILSVSA 482
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL I+N +++ SKIEAGK+ L +E F++ +L+E+ D+ Y + +K + + L +G
Sbjct: 483 KSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHDLLYPLAKQKQIGLRL---EGK 539
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+V GD+++L+QIL NL N +KFT+ G + +++ ++ ISK
Sbjct: 540 FDIQEYVYGDQLRLRQILWNLTGNGIKFTNHGEV--------------VLSVSQENISK- 584
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
N + F V D+G GIP +KQ +F+ F Q +
Sbjct: 585 -------------------------NNISIGFSVSDSGIGIPLEKQKQVFDAFSQSDTST 619
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER 673
G GLGL I + +V L G + + KE F + + E ER
Sbjct: 620 ARKFGGSGLGLSITKQLVELQGGTLNLESKEGFGSKFTFAITYDIPSESEIER 672
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 61/120 (50%), Gaps = 12/120 (10%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
NG K LV ED+ + L KLG V RNG+E + K+ D +D
Sbjct: 692 NGMKILVAEDNETNCLLIERALKKLGYDPVVVRNGREVIE---KMQLDF--------FDL 740
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MD MP ++G EAT+ IR +++ + I IIALTA + + GM+ LTKPL
Sbjct: 741 ILMDIHMPEVDGIEATKWIRSQKQNAEFPI-IIALTADVIESNKEIYISKGMNDCLTKPL 799
>gi|298530358|ref|ZP_07017760.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509732|gb|EFI33636.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1150
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 146/302 (48%), Gaps = 46/302 (15%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE S K+ LA SH++R + AI+G ++ D+ G D A ++ I +
Sbjct: 672 VRAKEAAEAASQAKSTFLANMSHEIRTPMNAILGFAQILERDSTLGPDHARHVQSISRNA 731
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
LL ILN +++MS+IEAG++E +FNL Q E++ M+ + KG+++ + +GS
Sbjct: 732 DHLLSILNDILDMSRIEAGQIEHNPRDFNLHQTFEDLELMFIPRAVSKGLELTFEK-NGS 790
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ + H D L+QI+ NL+ N+ KFTS+G ++ R + +K S C
Sbjct: 791 LPRAGHA--DPGMLRQIMVNLLGNACKFTSQGEVTFRISAEKNS-------------EAC 835
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ-VKET 619
+ + GF +V D+G GI ++ + IF+ F Q ++
Sbjct: 836 GT-----GQGGF----------------TLNVQVQDSGPGIDPEEMDRIFDPFHQGGRDP 874
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEE 679
G G GLGL I + +M G+++++ E+G F L V + RP D +
Sbjct: 875 GEG---GTGLGLHISRKYARIMGGDLSVSPHT--EKGSLF---CLQVPVQQATRPVEDGK 926
Query: 680 DP 681
P
Sbjct: 927 PP 928
>gi|134299991|ref|YP_001113487.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens
MI-1]
gi|134052691|gb|ABO50662.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum reducens
MI-1]
Length = 1271
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 143/285 (50%), Gaps = 50/285 (17%)
Query: 387 AERKSMNKTFALAKASHDVRASLAAIIGLVE-LCHEDANPGTDLAENLGLIRTCSKDLLG 445
AE+ S K+ LA SH++R + I+G E L ++ +P E++ +I+ C + L+
Sbjct: 533 AEKASKAKSEFLANMSHEIRTPMNGILGFAEVLIQQELSPQQQ--ESVKIIQQCGEQLMD 590
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N ++++SKIE+GK+ + E F+L +L+ E V++ +++ V++ +D + +
Sbjct: 591 LINDILDLSKIESGKLVMEETSFSLRKLIHEAVNVIESKFLEQNVEMKID-----IEQNL 645
Query: 506 H--VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSK 563
H ++GD +++Q+L NL+SN+ KFT +G++ + A +
Sbjct: 646 HDQLKGDPTRIRQVLYNLISNAAKFTHQGYVKISVAEE---------------------- 683
Query: 564 LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH 623
S+ + ++ F ++DTG GIPK+K IF+ F Q +
Sbjct: 684 ----------------SISGADHQIKLRFCIEDTGIGIPKEKLKLIFDAFTQADGSTTRK 727
Query: 624 QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
G GLGL I +S+ LM GEI + + +G F F + + V
Sbjct: 728 YGGTGLGLTICKSLTQLMGGEINVESQV--NKGSIFSFYIPVNKV 770
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 79/128 (61%), Gaps = 14/128 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+VED+ ++ + +L + EV NG +A + IL + + +D ++M
Sbjct: 1047 KILLVEDNHFNQRLVTHMLSDDYSIVEV-ENGVQALE----ILEEQK-------FDLVLM 1094
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MPVM+G+E TRLIRK+ + + +PIIALTA+AM G + K + AG + +L KP+++D
Sbjct: 1095 DMQMPVMDGYETTRLIRKQNKYKN--LPIIALTAYAMKGDSEKCMAAGCNGYLAKPVKRD 1152
Query: 1084 KLLDVVKS 1091
+L+ +K
Sbjct: 1153 QLIKTIKQ 1160
>gi|260777693|ref|ZP_05886586.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
coralliilyticus ATCC BAA-450]
gi|260605706|gb|EEX31991.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
coralliilyticus ATCC BAA-450]
Length = 856
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 133/272 (48%), Gaps = 45/272 (16%)
Query: 376 ALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGL 435
A I+ A ++AE + + LAK SH++R L I+G+ +L + TD E+L +
Sbjct: 461 AEIQSQAARKEAEESARVRADFLAKMSHELRTPLNGILGVSQLLKGKIS-NTDDIEHLDV 519
Query: 436 IRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD 495
+ + LL +LN +++ SKIE GK + +F L +L+ V +Y + +KG+ V++
Sbjct: 520 LCNSGEHLLAVLNDILDFSKIEQGKFHIQSADFRLVELISAVEKIYTPLCDEKGIGFVVE 579
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
+V + D+V+L QIL NLVSN++KFT EG ++V
Sbjct: 580 T---NVSNNTFAHSDQVRLNQILFNLVSNAIKFTHEGEVTVS------------------ 618
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615
F + E S E N+ V DTG GI +++ + IFE FVQ
Sbjct: 619 ---------LFCDGE---------SPESRLNI-----SVRDTGIGIERERISHIFEPFVQ 655
Query: 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
+ T G GLGL IV S+V ++ G+I I
Sbjct: 656 AEATTTREYGGSGLGLAIVHSLVEMLNGQIEI 687
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 13/117 (11%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+VED+ + A K G + ++G A DH+ K SD D I+MD
Sbjct: 732 LLVEDNHTNAFIAKAFCEKYGMEVAWVQDGHNAIDHLKK--SD--------NVDLILMDN 781
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
++P + G E T++IR E + IPI A TA M + G D+ + KP+++
Sbjct: 782 QLPNLGGIETTKIIR---EDLKLDIPIFACTADGMQDTKRAFLSVGADYVIVKPIKE 835
>gi|13359155|dbj|BAB33310.1| cytokinin receptor CRE1a [Arabidopsis thaliana]
Length = 1057
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 176/372 (47%), Gaps = 41/372 (11%)
Query: 337 NNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATE-QAERKSMNKT 395
+ K + L VL + ++G + I A + +M + +AE + K+
Sbjct: 392 HQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKS 451
Query: 396 FALAKASHDVRASLAAIIGLVELC--HEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
LA SH++R + I+G++ + E ++ D A+ + C K L+ ++N V++
Sbjct: 452 QFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQT---AQVCGKALIALINEVLDR 508
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
+KIEAGK+EL F++ +L++V+ ++ KG+++ + D V+GD +
Sbjct: 509 AKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKV---PEIVKGDSGR 565
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKS-------------FKQDIIASNRNVISKC 560
+QI+ NLV NS+KFT +GHI V+ + ++S +++I ++
Sbjct: 566 FRQIIINLVGNSVKFTEKGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSSYNT 625
Query: 561 LSKLFFRNKEGFDDLDAL-HSVERNPNLLQFEF--------EVDDTGKGIPKDKQNSIFE 611
LS + +G + D+ H V +L +F+ ++DTG GIP Q +F
Sbjct: 626 LSG--YEAADGRNSWDSFKHLVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQGRVFM 683
Query: 612 EFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL------ 665
F+Q + + G G+GL I + +V LM+G+I + G F F +L
Sbjct: 684 PFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFISRP--HIGSTFWFTAVLEKCDKC 741
Query: 666 TAVCERERPDTD 677
+A+ ++P+ +
Sbjct: 742 SAINHMKKPNVE 753
Score = 73.6 bits (179), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 20/138 (14%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP-- 1017
L GKK LVV+D+ + +V + L K GA+ +G+ A + +P
Sbjct: 919 LTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLL------------QIPHT 966
Query: 1018 YDYIMMDCEMPVMNGWEATRLIR------KEEEQYDVHIPIIALTAHAMAGVASKIVDAG 1071
+D MD +MP M+G+EATR IR KE+ + H+PI+A+TA + + + +G
Sbjct: 967 FDACFMDIQMPQMDGFEATRQIRMMEKEAKEKTNLEWHLPILAMTADVIHATYEECLKSG 1026
Query: 1072 MDFHLTKPLQKDKLLDVV 1089
MD +++KP +++ L V
Sbjct: 1027 MDGYVSKPFEEENLYKSV 1044
>gi|37519602|ref|NP_922979.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
PCC 7421]
gi|35210593|dbj|BAC87974.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
PCC 7421]
Length = 692
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 126/266 (47%), Gaps = 50/266 (18%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
LA ASH++R + II + +L E ++ G + E +I C + +L ++N+++++SKIE
Sbjct: 319 LAAASHELRTPMHGIISMTDLLLE-SDLGAEQRELAAIIGYCGETMLSLINNILDISKIE 377
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG--VDVVLDPCDGSVLGSCHVRGDRVKLK 515
AG+MEL F L +L++ VV M+ K + V++DP + GD V+L
Sbjct: 378 AGRMELDVVPFELPRLIDSVVAMFAEQLRSKDLRLQVLIDP-----EVPAQLEGDPVRLA 432
Query: 516 QILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDL 575
Q+L NLV NS+KFT G I++R
Sbjct: 433 QVLTNLVGNSLKFTPRGQIAIR-------------------------------------- 454
Query: 576 DALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQ 635
+H + + L+ FEV DTG G+ + +F+ F Q + G GLGL I +
Sbjct: 455 --VHPAAQGGDDLRLRFEVVDTGIGMAPETTGRLFQSFFQADTSTTRKYGGTGLGLAISR 512
Query: 636 SMVHLMKGEIAIADKEPGERGVCFRF 661
+V LM G+I + + E+G F F
Sbjct: 513 QLVELMGGQIGVESRL--EQGSTFWF 536
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 12/126 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L+VED+A+ KV L +LG EV G EA L+ L AL ++MD
Sbjct: 565 ILIVEDNAVNQKVLLRHLERLGCGAEVAETGAEA-------LTVLASRSFAL----VLMD 613
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
C+MPVM+G++AT IR+ E+ PI+ +TA+A AGV + AGMD L KP+++D+
Sbjct: 614 CQMPVMDGFQATAEIRRREDSAR-RTPIVGITANASAGVYDLCLAAGMDDCLIKPVRRDQ 672
Query: 1085 LLDVVK 1090
L ++
Sbjct: 673 LTAAIE 678
>gi|343508478|ref|ZP_08745820.1| PAS domain-containing protein [Vibrio ichthyoenteri ATCC 700023]
gi|342793792|gb|EGU29580.1| PAS domain-containing protein [Vibrio ichthyoenteri ATCC 700023]
Length = 1803
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 145/297 (48%), Gaps = 55/297 (18%)
Query: 365 KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
K A+RE+ L A ++AE + K+ LA SH++R + AIIG+ L +
Sbjct: 965 KEAERELML---------AKQKAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLAMQ-TQ 1014
Query: 425 PGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHV 484
A+ + I+T ++ LLGI+N +++ SKIEAGK++L + EF+L ++ +V +
Sbjct: 1015 LNKKQADYVNKIQTSAESLLGIINDILDFSKIEAGKLDLEQTEFDLESTIDNLVQVVSQR 1074
Query: 485 GIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
+K +++++D D + H+ GD ++L QIL NL +N++KFT G I V+A +
Sbjct: 1075 TQEKDLELLVD-LDPQL--PTHLIGDPLRLGQILLNLANNAIKFTDRGEIIVKAEL---- 1127
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
+E ++++ F V DTG G+ ++
Sbjct: 1128 ------------------------------------IELGDDIVEARFSVSDTGIGMTQE 1151
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
+ +F+ F Q + G GLGL I +++ +M G I + + E G+ G F F
Sbjct: 1152 QMARLFQSFSQADASTTRKYGGTGLGLTISKTLSEMMNGSIWV-ESESGQ-GSTFFF 1206
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 85/146 (58%), Gaps = 21/146 (14%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G + L+VED+AI ++ + +L +G + NG+EA D V +A +D +
Sbjct: 1381 GARVLLVEDNAINQEIATELLHMVGVEVTAANNGQEAVDLV-----------EAQSFDLV 1429
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MD +MPVM+G++AT+ IR ++D +PIIA+TA+AM+G K + AGM+ HL KP+
Sbjct: 1430 LMDIQMPVMDGYQATQAIRNTG-RFD-DLPIIAMTANAMSGDKEKCLAAGMNDHLPKPIN 1487
Query: 1082 KDKLLDVV--------KSIDETMEKQ 1099
+++ + KS+ TME +
Sbjct: 1488 PNQVFQALVDWIEPTGKSVSLTMEPE 1513
Score = 40.4 bits (93), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 929 FGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAK 988
F A+ G ISS Q + QS + G L+V+D ++ ++ L
Sbjct: 1206 FTAQFG--ISSEYPQQQVLPPQS--------MQGVSVLIVDDSVAAREILFSLCDSLNFT 1255
Query: 989 FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDV 1048
+V +G EA + + + +K +D I+ D +MP M+G E R I +E+ ++
Sbjct: 1256 ADVACSGAEALEKIQTAEQNQQK------FDVILSDWKMPKMDGIELGRQIEALQERGEI 1309
Query: 1049 HIP--IIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092
+ +TA+ + ++ + + +TKP+ LLD V +
Sbjct: 1310 AAAPHFVMVTAYDKDEMLAQRQEVDIAASMTKPVSSSTLLDTVSRV 1355
>gi|150017913|ref|YP_001310167.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
NCIMB 8052]
gi|149904378|gb|ABR35211.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
NCIMB 8052]
Length = 669
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 134/281 (47%), Gaps = 50/281 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+A++ + K+ LA SH++R + IIG+++L + E L ++ S+
Sbjct: 288 AKEEADKANKAKSEFLANISHEIRTPMNGIIGIIDLLKV-TELNNNQKEYLDMLSNSSRL 346
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGS 500
LLGILN+++++SKIE+GK EL+ + FN+ + L+ + KK ++V +DP
Sbjct: 347 LLGILNTILDISKIESGKFELILKPFNMKKTLDRITKELSIACSKKNLEVFYYIDPY--- 403
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ + GD ++L Q+L N+++N++KFT G I +
Sbjct: 404 --INFDLIGDEIRLNQVLINIINNAIKFTEMGQIMFK----------------------- 438
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+ + N L EF V DTG GI ++ +N IF++F+Q T
Sbjct: 439 -----------------VRKLNTTNNKLTLEFSVKDTGIGIKEEFKNDIFKKFIQQDMTY 481
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
+G GLGL I + + LM G+I E +G F F
Sbjct: 482 TKKYDGTGLGLAISKDIAKLMNGDIWFESIEN--KGSTFYF 520
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 81/128 (63%), Gaps = 11/128 (8%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
K+ L+VED+ I +K+T +L +LG ++E +GK+A + + K +D I
Sbjct: 549 NKRILLVEDNEINIKITCEMLNRLGYEYEYVYDGKQALEKL-----------KENTFDLI 597
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MD +MP +NG++ TR+IR++E + H+ IIA+TA++M G + ++ GMD +++KP
Sbjct: 598 LMDIQMPELNGYDTTRIIREKEIKTKEHVNIIAMTAYSMNGDRERCIEVGMDDYISKPFD 657
Query: 1082 KDKLLDVV 1089
+KL +V+
Sbjct: 658 MNKLKNVI 665
>gi|13359157|dbj|BAB33311.1| cytokinin receptor CRE1b [Arabidopsis thaliana]
Length = 1080
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 176/372 (47%), Gaps = 41/372 (11%)
Query: 337 NNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATE-QAERKSMNKT 395
+ K + L VL + ++G + I A + +M + +AE + K+
Sbjct: 415 HQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKS 474
Query: 396 FALAKASHDVRASLAAIIGLVELC--HEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
LA SH++R + I+G++ + E ++ D A+ + C K L+ ++N V++
Sbjct: 475 QFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQT---AQVCGKALIALINEVLDR 531
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
+KIEAGK+EL F++ +L++V+ ++ KG+++ + D V+GD +
Sbjct: 532 AKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKV---PEIVKGDSGR 588
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKS-------------FKQDIIASNRNVISKC 560
+QI+ NLV NS+KFT +GHI V+ + ++S +++I ++
Sbjct: 589 FRQIIINLVGNSVKFTEKGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSSYNT 648
Query: 561 LSKLFFRNKEGFDDLDAL-HSVERNPNLLQFEF--------EVDDTGKGIPKDKQNSIFE 611
LS + +G + D+ H V +L +F+ ++DTG GIP Q +F
Sbjct: 649 LSG--YEAADGRNSWDSFKHLVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQGRVFM 706
Query: 612 EFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL------ 665
F+Q + + G G+GL I + +V LM+G+I + G F F +L
Sbjct: 707 PFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFISRP--HIGSTFWFTAVLEKCDKC 764
Query: 666 TAVCERERPDTD 677
+A+ ++P+ +
Sbjct: 765 SAINHMKKPNVE 776
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 20/138 (14%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP-- 1017
L GKK LVV+D+ + +V + L K GA+ +G+ A + +P
Sbjct: 942 LTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLL------------QIPHT 989
Query: 1018 YDYIMMDCEMPVMNGWEATRLIR------KEEEQYDVHIPIIALTAHAMAGVASKIVDAG 1071
+D MD +MP M+G+EATR IR KE+ + H+PI+A+TA + + + +G
Sbjct: 990 FDACFMDIQMPQMDGFEATRQIRMMEKEAKEKTNLEWHLPILAMTADVIHATYEECLKSG 1049
Query: 1072 MDFHLTKPLQKDKLLDVV 1089
MD +++KP +++ L V
Sbjct: 1050 MDGYVSKPFEEENLYKSV 1067
>gi|32474842|ref|NP_867836.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
gi|32445382|emb|CAD75383.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
Length = 865
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 134/280 (47%), Gaps = 47/280 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
+AT+ AE+ + K+ LA SH++R + +I+G +L + D ++ IR
Sbjct: 458 DATDAAEQANRAKSQFLANMSHEIRTPMTSILGYADLISQ-KQIDEDTRSHVATIRRNGA 516
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LLG++N ++++SKIEA ME+ +E NL L+E+V+ + +K +++ +D C G +
Sbjct: 517 FLLGLINDILDLSKIEADHMEVFDESVNLIHLIEDVLSIMQVRAAEKDLEIRVDYC-GKI 575
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
++ D +L+QIL NLV N++KFT GH VR AV+
Sbjct: 576 --PREIQADSKRLRQILVNLVGNAVKFTEAGH--VRVAVR-------------------- 611
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
E++ + F+V DTG GI ++ +F+ F Q + +
Sbjct: 612 -------------------AEQSDRRTRVHFDVVDTGIGISDERMKKLFQPFSQGDPSIM 652
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
G GLGL I Q +V ++ GEI + G CF F
Sbjct: 653 RTYGGTGLGLVISQRLVAMLGGEITARSRV--NEGSCFSF 690
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV +D + + +L GA + +G++A DH+ + LS ++ P +++
Sbjct: 740 QVLVADDRRDIRYLLKRILAGAGASVDEVEDGQQAVDHIAQTLS-----SESCPQ-VVIL 793
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP ++G+EAT+ +R IIALTA AM G + +D G D +++KP+
Sbjct: 794 DMQMPNLDGFEATQELRT----LGYTGLIIALTADAMDGDRQRCLDCGCDDYMSKPIDSA 849
Query: 1084 KLL 1086
KL+
Sbjct: 850 KLI 852
>gi|262164440|ref|ZP_06032178.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223]
gi|262026820|gb|EEY45487.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223]
Length = 1576
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 135/271 (49%), Gaps = 44/271 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTD--LAENLGLIRTCS 440
A AE+ + K+ LA SH++R L AI+GL L +++ + L + +G+
Sbjct: 821 ALRDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESLTESQHRLVDKIGI---SG 877
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LLGI+N V+++SKIEA +M L +L + LEEV ++ K +D L+ G+
Sbjct: 878 KSLLGIVNDVLDLSKIEANEMILEALPLDLKEFLEEVASVFSTQAEAKNLDFKLEM--GA 935
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
L V D ++L+QIL NL+SN++KFTS GHI++ A V
Sbjct: 936 DLPHW-VIADSMRLRQILTNLLSNALKFTSVGHIALHAEV-------------------- 974
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+ K ++ E N+++ F + DTG GI ++ Q +F+ F Q +
Sbjct: 975 IDKFIWKGAE--------------KNIVR--FSITDTGIGISEEAQKRLFKPFSQADTST 1018
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651
G GLGL IV ++ LM+G+I + E
Sbjct: 1019 SRRFGGTGLGLSIVHKLLGLMEGKIGVESSE 1049
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 922 PLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKC-SEKPLNGKKFLVVEDDAIVLKVTSA 980
P+N F A +++S H + +V + + K L G + LVV+D A L+V
Sbjct: 1189 PINASAVFNA-VNSAVSQHSGNANRVLLSTRTEAIKAKWLLGFRVLVVDDSATNLEVADY 1247
Query: 981 VLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040
VL + GA V +G+EA ++ L+++ + YD ++MD +MP M+G E TR IR
Sbjct: 1248 VLTQAGATTNVVASGEEA-------INKLKQQNE---YDAVLMDVQMPGMDGLETTRYIR 1297
Query: 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKS 1091
+ + +PIIALTA A+ + +GM+ LTKP+ +L+ V+++
Sbjct: 1298 NTLKLHS--LPIIALTAGALVEERKRAFASGMNDFLTKPISPSRLISVLRT 1346
>gi|428222136|ref|YP_007106306.1| bacteriophytochrome (light-regulated signal transduction histidine
kinase) [Synechococcus sp. PCC 7502]
gi|427995476|gb|AFY74171.1| bacteriophytochrome (light-regulated signal transduction histidine
kinase) [Synechococcus sp. PCC 7502]
Length = 923
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 131/257 (50%), Gaps = 44/257 (17%)
Query: 391 SMNKTFALAKASHDVRASLAAIIGLVELCH-EDANPGTDLAENLGLIRTCSKDLLGILNS 449
S K+ LA SH++R L AI+G +L E+ NP ++ + L I + LL I+N
Sbjct: 539 SKAKSEFLANMSHEIRTPLNAILGFTQLLDIEELNP--EMHDYLKSISQSGESLLTIIND 596
Query: 450 VMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRG 509
++++SK+EAG+++L EF + +L+ ++++++ I KG+ V+ + +V + G
Sbjct: 597 ILDLSKLEAGELKLQSTEFEVRELIWKLINLFQPQAIAKGI-VLTETVAENV--PLFLIG 653
Query: 510 DRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNK 569
+L+Q+L NL+ N++KFT G I+V N V+ + +S+
Sbjct: 654 PATRLQQVLTNLIGNAVKFTVSGSIAV----------------NIEVVEELISE------ 691
Query: 570 EGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629
+L+ FEV DTG GI + + IFE F Q ++ EG GL
Sbjct: 692 ----------------SLITLRFEVQDTGIGISPEFRVKIFEPFSQADTSSTRQYEGTGL 735
Query: 630 GLGIVQSMVHLMKGEIA 646
GL I + +VHLM GEI
Sbjct: 736 GLTICRKIVHLMGGEIG 752
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 12/138 (8%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
N K LVVED+ + K+ +L G + + NG+ A + V +E Y
Sbjct: 796 NSIKVLVVEDNNLNQKLMIKMLQNFGYQVDAVTNGQLALERV-------NQEN----YTV 844
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+MDC+MPV++G+EATR IR E+ II T++AM G K ++AGMD +++KP+
Sbjct: 845 ILMDCQMPVLDGYEATRQIRLLEDGEPHRSIIIGATSYAMVGDREKCLEAGMDDYISKPI 904
Query: 1081 QKDKLLDVV-KSIDETME 1097
+ + L ++ K I +T E
Sbjct: 905 KMNDLSSILQKWIRKTSE 922
>gi|329924932|ref|ZP_08279879.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
gi|328940316|gb|EGG36645.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
Length = 1003
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 134/291 (46%), Gaps = 61/291 (20%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLI 436
+ A E AER KT L SH++R + IIG++EL T+L E+ + ++
Sbjct: 754 IRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELL-----STTELDEDQQNYIHIL 808
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
S LL ILN +++ SKIE G M L E +L LLE VVD++ +KG+ +
Sbjct: 809 MESSGSLLHILNEILDFSKIETGNMTLNHEPIDLRSLLEVVVDLFSAKAKQKGLSL---- 864
Query: 497 CDGSVLGSCHVR----GDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
S + S +V GD ++L+Q+L NL+SN++KFT EG I++ +++ Q+ +
Sbjct: 865 ---SFINSANVPDVIIGDALRLRQVLVNLISNAIKFTHEGSITMSVEGLRRTGTQEFTLA 921
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
F+V DTG GI + Q+ +F
Sbjct: 922 ---------------------------------------FQVKDTGIGIAPELQHQLFTS 942
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
F Q+ + G GLGL I + +V LM G I + +E G F F +
Sbjct: 943 FSQLHPSLNRKYGGTGLGLAISKKLVELMGGVIGVESRENA--GSSFYFTI 991
>gi|317154768|ref|YP_004122816.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
gi|316945019|gb|ADU64070.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
Length = 1521
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 141/308 (45%), Gaps = 60/308 (19%)
Query: 372 FLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP------ 425
+L L+ AT+ + K M + A A + ASLA L + HE P
Sbjct: 1113 WLEGRLVHMHMATDITDLKVMEQELKRAMAKAEA-ASLAKNEFLANMSHEIRTPLNGLLG 1171
Query: 426 ----------GTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLE 475
G + E L + + + LL ILN ++++SKIE+GK+EL ++E +L ++ E
Sbjct: 1172 MLQLLQLTILGGEQREFLEIALSSGRSLLQILNDILDISKIESGKLELDDQELDLGEVAE 1231
Query: 476 EVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHIS 535
VV ++ H +G++V L D ++ H D+V+L+QIL NLV N+ KFT G +
Sbjct: 1232 SVVAVFRHQARMRGIEVAL-VMDKTL--PRHFLADKVRLRQILFNLVGNATKFTESGSVL 1288
Query: 536 VRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVD 595
V A + + ++LF F V
Sbjct: 1289 VEAYPLA------------HPMPDGRAQLF--------------------------FSVS 1310
Query: 596 DTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGER 655
DTG GIP DK + IF+ F QV + +G GLGLGIV+ +V LM G IA+ D E G
Sbjct: 1311 DTGIGIPDDKMDQIFDPFTQVDGSFTRKYQGTGLGLGIVRRLVALMGGTIAV-DSELGA- 1368
Query: 656 GVCFRFNV 663
G F V
Sbjct: 1369 GTTVVFTV 1376
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 17/135 (12%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+PL+ LVVED+ V +LGKLG + +G+EA + IL+
Sbjct: 1398 RPLS---ILVVEDERTNRAVAQRLLGKLGHEAACAESGEEAIE----ILA-------TAA 1443
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
+D I+MD +MP ++G E TR IR + + IPIIALTAHAM G + +DAGM ++
Sbjct: 1444 FDCILMDIQMPGLDGVETTRAIR---DTLGLDIPIIALTAHAMEGDRKRFLDAGMQGYVA 1500
Query: 1078 KPLQKDKLLDVVKSI 1092
KP +L D ++ +
Sbjct: 1501 KPFDLPELQDELERV 1515
>gi|339484541|ref|YP_004696327.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. Is79A3]
gi|338806686|gb|AEJ02928.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. Is79A3]
Length = 921
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 135/285 (47%), Gaps = 49/285 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E AE S K+ LA SH++R + I+G+ EL D D +++ +
Sbjct: 259 AKESAEAASKAKSEFLATMSHEIRTPMNGILGMTELLL-DTQLDKDQHRFAETVQSSGQH 317
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGS 500
LLGI+N +++ SKIE+ MEL +F+L +L+E+ + M+ KKG++++ P + +
Sbjct: 318 LLGIINDILDFSKIESDHMELETIDFDLVKLIEDTLTMFAQPADKKGLELIAQFTPPNTA 377
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +RGD +++QI+ NL++N++KFT +G I +R +
Sbjct: 378 FM----LRGDSFRIRQIIANLLNNAIKFTEQGEIVIRTML-------------------- 413
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
LD ++ R V+DTG GIP IF+ F Q +
Sbjct: 414 --------------LDGSETLTR------VSICVEDTGIGIPPVYHEKIFQNFSQADGST 453
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
G GLGL I + ++ LM+G I + + PG G F N+ L
Sbjct: 454 TRQYGGTGLGLTICKKLLELMEGSIHV-ESSPG-HGSKFWINLRL 496
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+ ED+ + +V A+L KLG + +G++A + + YD I+M
Sbjct: 665 KVLLAEDNPVNQEVAKAMLAKLGLDTVIAHDGQQALYLI-----------QNNQYDLILM 713
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
DC+MP M+G+EAT IR +Q+ IIALTA+A + +D GM+ L+KP D
Sbjct: 714 DCQMPNMDGFEATAHIR---QQFGNSHTIIALTANATEDDRKRCLDGGMNDFLSKPYSID 770
Query: 1084 KL 1085
+L
Sbjct: 771 QL 772
>gi|427725909|ref|YP_007073186.1| integral membrane sensor hybrid histidine kinase [Leptolyngbya sp.
PCC 7376]
gi|427357629|gb|AFY40352.1| integral membrane sensor hybrid histidine kinase [Leptolyngbya sp.
PCC 7376]
Length = 785
Score = 112 bits (281), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 170/366 (46%), Gaps = 74/366 (20%)
Query: 329 GLGSLVSRNNKLSLMLL-VLMFIAGVISLGLFIILIAKAAKREMF--------------- 372
GLGS S+N SL+ L + + V +L L IL + KR+ F
Sbjct: 303 GLGSFASQNLNNSLVQLQSFIVVIVVTTLSLLAIL---SEKRQAFRKLKQSEISLTERTN 359
Query: 373 ----------LCAALIKQMN-----ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVE 417
A++++Q N A E A++ + KT L+ SH++R L A++GLV+
Sbjct: 360 QLEHSQAKLNAAASVLEQQNIDLFEAKEIADQANNAKTEFLSNMSHELRTPLNAVLGLVQ 419
Query: 418 LCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEV 477
L N +L + LL ++ ++++SKIE+GKMEL +E +L L+++
Sbjct: 420 LLKSSNNLNALERSDLQTVHDSGIHLLYLIEDILDISKIESGKMELQFQEIHLETFLKKI 479
Query: 478 VDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVR 537
+ + K +D++ C+ S ++R DR +LKQ+L NL++N++KFT +GH+ R
Sbjct: 480 IAIIQVQANNKKLDLI---CEFSEDLPKNIRADRKRLKQVLINLLNNAVKFTKKGHVIFR 536
Query: 538 AAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDT 597
R + G + ++ S+ FE++D+
Sbjct: 537 VYTD-------------------------RIETGTEKSNSFASI---------RFEIEDS 562
Query: 598 GKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGV 657
G GI +K SIF F Q ET +G GLGL I Q ++ ++ G+I + D + G G
Sbjct: 563 GVGIRPEKLESIFLPFEQTGETKF-KVKGTGLGLAISQKIIKMIGGKITV-DSQIGV-GS 619
Query: 658 CFRFNV 663
F F V
Sbjct: 620 RFLFTV 625
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 20/132 (15%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
PLN L+ ED+ + KV S VL +LG + ++ NG E +L RK+ Y
Sbjct: 658 PLN---ILLAEDNMVNQKVASRVLERLGYRIDIVNNGLE-------VLEITRKQM----Y 703
Query: 1019 DYIMMDCEMPVMNGWEATR-LIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
D ++MD +MP M+G EAT+ L+ E Y IIALTA+AM+ + AGM+ +L+
Sbjct: 704 DVVLMDIQMPEMDGIEATKHLLDSEYRPY-----IIALTANAMSSDRLVCLAAGMNDYLS 758
Query: 1078 KPLQKDKLLDVV 1089
KP+ + L++ +
Sbjct: 759 KPINIELLVEAL 770
>gi|372280982|ref|ZP_09517018.1| sensory box sensor histidine kinase/response regulator [Oceanicola
sp. S124]
Length = 527
Score = 112 bits (281), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 136/288 (47%), Gaps = 50/288 (17%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
QAE + K+ LA SH++R L AI G+ EL +D + + ++ + IR SK LL
Sbjct: 145 QAEASAKAKSSFLATMSHEIRTPLNAISGMGELL-QDRDLDAEASQYVTTIRDASKSLLR 203
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV--DVVLDPCDGSVLG 503
I+N V++ S+++AG++ L F+ + +E + + + +KG+ D+V CDGS+
Sbjct: 204 IVNDVLDFSRLDAGQLALENRPFSPQEAIETIRRLMQPLAEQKGLRLDLV---CDGSL-- 258
Query: 504 SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSK 563
GD +LKQIL NL SN++KFT +G +++RA K
Sbjct: 259 PPRAIGDETRLKQILMNLTSNAIKFTEQGEVAIRARSTK--------------------- 297
Query: 564 LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH 623
++ G+ + + V DTG GIP++ IF+ F Q +
Sbjct: 298 ----SEAGW----------------RLQITVSDTGIGIPQESWEKIFDPFYQGNNASTRR 337
Query: 624 QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCER 671
G GLGL I + + M G++ + P G F ++L + ER
Sbjct: 338 HGGTGLGLSISRVLARSMGGDLRLLPGGPST-GSHFELTLVLEDLGER 384
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 16/128 (12%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L L+ +D+ I + S L + A+ +G++A + S L ++ D
Sbjct: 401 LGAMTVLIADDNEINRLLVSEFLKQTPARVLTAEDGRQAVE------STLSRQP-----D 449
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLTK 1078
I+MD MP ++G +ATR IRK D+ P IIALTA+A + + + AGM+ L+K
Sbjct: 450 VILMDLSMPELDGLDATREIRK----LDIPQPYIIALTANAFSSDRNACIAAGMNDFLSK 505
Query: 1079 PLQKDKLL 1086
PL + LL
Sbjct: 506 PLTRKDLL 513
>gi|345860455|ref|ZP_08812770.1| his Kinase A domain protein [Desulfosporosinus sp. OT]
gi|344326458|gb|EGW37921.1| his Kinase A domain protein [Desulfosporosinus sp. OT]
Length = 869
Score = 112 bits (281), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 128/271 (47%), Gaps = 56/271 (20%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED--ANPGTDLAENLGLIRTCS 440
A E+AE+ + K+ LA SH++R L IIG L A +N+GL +
Sbjct: 271 AKEEAEKANKAKSEFLANMSHEIRTPLNTIIGYHYLLESTQFAPKQKQYMQNVGL---AA 327
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY----YHVGIKKGVDVVLDP 496
K LLGI+N +++ SKIEAG+M L EFNL ++++E+ M +H G++ V V+ P
Sbjct: 328 KSLLGIINEILDFSKIEAGRMTLETVEFNLYEVIKELCSMVQIEAHHHGLE--VRYVIQP 385
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
+V+GD +LKQ+L NL+SN +KFT +G + V V K
Sbjct: 386 G-----VPRYVKGDATRLKQVLLNLLSNGIKFTDQGELEVIVEVLKN------------- 427
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
DD N F V DTG GI +++ +FE F Q
Sbjct: 428 ----------------DD-----------NQAHLRFNVSDTGIGISEEQMKHLFEVFTQG 460
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAI 647
+ G GLGL I + +V LM GEI++
Sbjct: 461 DASTSRKYGGTGLGLAICKKIVGLMAGEISV 491
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 13/139 (9%)
Query: 952 DGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRK 1011
+ K ++ KK L+VED+ I L++T +L LG + ++G A V K
Sbjct: 519 ENKLNQDIFATKKILIVEDNQINLQMTKDILESLGFATDTSQSGYTAVQMVNK------- 571
Query: 1012 EGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAG 1071
+ YD I+MD MP M+G+E TR I E + PIIAL+A A+ GVA K AG
Sbjct: 572 ----MRYDAIVMDIRMPEMDGYETTRRIL--ELKGLKAPPIIALSADAVEGVAEKAKLAG 625
Query: 1072 MDFHLTKPLQKDKLLDVVK 1090
M +LTKPL KL +V++
Sbjct: 626 MSGYLTKPLDPLKLAEVLQ 644
>gi|320159170|ref|YP_004191548.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
gi|319934482|gb|ADV89345.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
Length = 716
Score = 112 bits (281), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 141/304 (46%), Gaps = 48/304 (15%)
Query: 345 LVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHD 404
L ++F++ +I + L L + F + A AE + K+ LA SH+
Sbjct: 187 LAILFVSILI-IALVFKLYIDQVRLTRFTQQQSLDMQEAKRAAEASAETKSKFLANISHE 245
Query: 405 VRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELV 464
VR L AIIGL + H N + E + LI K LL ++N ++++SKI++GK+ L
Sbjct: 246 VRTPLNAIIGLSDTDHY-LNASEQIREYIDLIHRSGKHLLALMNDILDISKIDSGKLTLE 304
Query: 465 EEEFNLAQLLEEVVDMYYHVGIKKGVD-VVLDPCDGSVLGSCHVRGDRVKLKQILCNLVS 523
+ EF+L ++++ +++ GV+ ++ P D ++ GD ++L QI+ NL S
Sbjct: 305 QVEFSLKDIVDDTRVLFHERTQTPGVESFIITPQDCDMI----FYGDPLRLFQIISNLCS 360
Query: 524 NSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVER 583
N++KFT EG I V V+ R
Sbjct: 361 NAIKFTHEGQIKVAFTVQN----------------------------------------R 380
Query: 584 NPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKG 643
PN + + V DTG GI + + +F+EFVQ ++ G GLGL I Q + +LM+G
Sbjct: 381 GPNSV-LQICVSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQG 439
Query: 644 EIAI 647
+ I
Sbjct: 440 TLRI 443
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 13/128 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED I V + L +LG ++ NG+EA L+ +RK+ YD ++M
Sbjct: 590 QVLLVEDVHINQLVATHFLARLGIVPDMANNGEEA-------LARMRKQA----YDLVLM 638
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MPVM+G +A ++I + EQ IIA+TA+ K AG D L KP D
Sbjct: 639 DIQMPVMDGLQAMKVI--QAEQLAKGAMIIAVTANVFEEDEKKYRQAGFDDILAKPFNVD 696
Query: 1084 KLLDVVKS 1091
L V+++
Sbjct: 697 ALQSVIET 704
>gi|300865030|ref|ZP_07109857.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300336967|emb|CBN55007.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 1162
Score = 112 bits (281), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 134/282 (47%), Gaps = 46/282 (16%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A E AE + K+ LA SH++R L +I+G +L + N + L E L +I +
Sbjct: 690 QAKEAAEAANQAKSVFLANMSHELRTPLNSILGFTQLMSYENNLTSSLQERLQIINRSGR 749
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N ++++SKIE+G+M L +F+L LL + +M K + ++++ + +
Sbjct: 750 HLLDLINDILDLSKIESGRMTLNPSDFDLINLLTSIEEMLQVKVQSKSLQLIVER-ESEL 808
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
H D KL Q+L NL+SN++KFT +G I++R ++K ++ C
Sbjct: 809 PNFVHT--DEKKLYQVLVNLLSNALKFTQQGSITLRVRAEQKE---------KHSCRLC- 856
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
FEV+DTG GI + + +F+ FVQ +
Sbjct: 857 ------------------------------FEVEDTGVGIAPTEIDKLFKVFVQA-QAGN 885
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+G GLGL I Q +V LM G+I + + RG F F +
Sbjct: 886 NLSQGTGLGLAISQKLVQLMGGQIQV--QSTLNRGSTFSFEI 925
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 16/166 (9%)
Query: 923 LNKLKSFGAEAGASISSHCS-SLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAV 981
LN+ +F E +S S +Q+ + E+P + LVVED ++ +
Sbjct: 915 LNRGSTFSFEIKVQLSQIASLPSEQINQRVISLAPEQP--NYRLLVVEDIEENRRLLVEI 972
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
L +G + G EA L L I MD MP ++G+ AT+ IR+
Sbjct: 973 LTSIGFDVREAKQGIEALSLWESWLPHL-----------IFMDLRMPSLDGYTATKRIRE 1021
Query: 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLD 1087
+ + IIALTA ++ G + ++KP Q+ + D
Sbjct: 1022 NPKSRET--VIIALTASVFEEDRENVLTNGFNDFISKPFQQRDIFD 1065
>gi|152994636|ref|YP_001339471.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
MWYL1]
gi|150835560|gb|ABR69536.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
MWYL1]
Length = 1057
Score = 112 bits (281), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 150/303 (49%), Gaps = 50/303 (16%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIG-LVELCHEDANPGTDLAE 431
L A+ ++Q A E+A+ + K+ LA SH++R L +IG L L + P
Sbjct: 534 LKASELEQSKAKEEAQEANRAKSEFLANMSHEIRTPLNGVIGCLSLLMNTKLQPDQS--- 590
Query: 432 NLGLI-RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV 490
NL I + ++ LL I+N ++++SKIE G + L ++EF L L+EEV +++ +KG+
Sbjct: 591 NLAKISQQSAESLLDIINDILDLSKIEMGTLVLDKQEFELRALIEEVTNIFVLKAEEKGI 650
Query: 491 DVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDII 550
V+ P + + + + GDR+++KQ+L NL+ N++KFT EG +++R A++ +
Sbjct: 651 -VLNSPT--TPIPNVTLFGDRLRIKQVLVNLMGNAVKFTQEGEVALRFAIEPLA------ 701
Query: 551 ASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIF 610
DD L V ++D+G GI K+ Q+ +F
Sbjct: 702 ----------------------DDSVILRIV------------IEDSGIGISKENQSHLF 727
Query: 611 EEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
+ F Q + G GLGL I + ++ M GEI + E +G F F + L+ V
Sbjct: 728 QRFKQADGSTTRKFGGSGLGLAISKEIIQAMDGEIGLNSVEG--QGSSFWFRIPLSVVST 785
Query: 671 RER 673
E+
Sbjct: 786 AEQ 788
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 75/133 (56%), Gaps = 12/133 (9%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+P+ K L+ ED+ V +L G + V NG++A + + ++
Sbjct: 931 RPIFTAKVLLAEDNLTNQVVARGLLNLYGVEVVVAENGQKAVE-----------QAQSTQ 979
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRK-EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
+D I MDC+MPVM+G+EATR IR+ + Q + I+AL+A+AM G + AGM+ H+
Sbjct: 980 FDMIFMDCQMPVMDGYEATRTIRQFTDAQTPSDVAIVALSANAMKGDEDECFAAGMNDHI 1039
Query: 1077 TKPLQKDKLLDVV 1089
KP+ +DKL+ ++
Sbjct: 1040 AKPISQDKLIAIL 1052
>gi|427733874|ref|YP_007053418.1| PAS domain-containing protein [Rivularia sp. PCC 7116]
gi|427368915|gb|AFY52871.1| PAS domain S-box [Rivularia sp. PCC 7116]
Length = 1487
Score = 112 bits (281), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 144/286 (50%), Gaps = 22/286 (7%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A E AE + K+ LA+ +H++R L AI+G ++ + + + L I S
Sbjct: 985 VRAKEAAEAANQAKSDFLARMTHELRTPLNAILGFTQILNRNPKLENKQKQYLDTILRSS 1044
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LLG++N ++++SKIEAG E+ F+L +LL+ + M Y K + + + D
Sbjct: 1045 KHLLGLINDILDISKIEAGMAEVHVNTFDLYRLLDGIEAMLYIKARAKKLRLKFE-FDPE 1103
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ +V+ D+ KL+QIL NL+ N++KFT +G + +R + C
Sbjct: 1104 L--PQYVQADKSKLRQILINLLQNAIKFTDKGSVVLRVTITPPCND-----------GAC 1150
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
S + E +P+ L F+V+DTG+GI ++ N IF+ FVQ T
Sbjct: 1151 GSPVNLGEVEK-----VEEVENSSPSSLCLYFQVEDTGRGIAPEELNHIFDAFVQSNPT- 1204
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
++G GLGL I + V LM G I I + GE G +FN+L++
Sbjct: 1205 YQVEDGTGLGLSICKRFVELMGGAINI-ESGVGE-GTTVKFNILIS 1248
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 19/132 (14%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCR--NGKEAFDHVCKILSDLRKEGKALPYDYI 1021
+ LVVED+ ++ +L LG FEV NG+EA + K +L I
Sbjct: 1276 RILVVEDNWENRQLLLQILVPLG--FEVIEAVNGQEAIEIWEKEQPNL-----------I 1322
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIP----IIALTAHAMAGVASKIVDAGMDFHLT 1077
+MD MPVM+G+EAT++I+++ + + IP IIALTA A +++ G + +
Sbjct: 1323 LMDMRMPVMDGYEATKIIKQKMNRNEPEIPSKTAIIALTATAFNEDRKFMLELGCNDFIR 1382
Query: 1078 KPLQKDKLLDVV 1089
KP Q++ LLD +
Sbjct: 1383 KPFQQEVLLDKI 1394
>gi|42524788|ref|NP_970168.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
HD100]
gi|39576998|emb|CAE78227.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
HD100]
Length = 734
Score = 112 bits (281), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 145/297 (48%), Gaps = 49/297 (16%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ A +A + S K+ LA SH++R + I+G+ E+ D NP + + + + +IR +
Sbjct: 220 VEARNEALQASHMKSSFLANMSHEIRTPMNGILGMTEVLL-DQNPESGIKKKIQIIRESA 278
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+LL ++N ++++SKIE+GK+EL E F +L++EV++ + KG+D+ + +
Sbjct: 279 LNLLSLINGILDLSKIESGKLELEESYFEPRKLVQEVINTVEYSAKSKGLDLHASVSEQT 338
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
GD ++L+QIL NL+ N++KF+SEG +S+ I+ S R+ S+
Sbjct: 339 ---PAAFSGDVLRLRQILINLLGNAIKFSSEGTVSL------------IVNSFRSDQSRT 383
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+ + +V D G G+ + IF F Q ++
Sbjct: 384 M----------------------------LQIQVKDQGLGMDEATLKKIFSPFEQADKST 415
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV---CERERP 674
G GLGL I + +V LM G+I + K P E G F + L A+ E +RP
Sbjct: 416 TRKFGGTGLGLSITKQLVELMNGKIEVESK-PNE-GSIFWVTLPLEAINVMPENQRP 470
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 70/125 (56%), Gaps = 14/125 (11%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
S+ PL K LV ED+ +V +L +LG KF++ NGKEA + K LS
Sbjct: 479 SQAPL---KILVAEDNMTNQEVVRVMLNRLGHKFDIVNNGKEALE---KTLSG------- 525
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075
YD I+MDC MPVM+G+ A + I + Q+ +IA+TA+A+ G + AGM +
Sbjct: 526 -TYDIILMDCHMPVMDGYVAAQKITERFPQWCQGPAVIAVTANAIRGDKEACLAAGMCDY 584
Query: 1076 LTKPL 1080
L+KPL
Sbjct: 585 LSKPL 589
>gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
DSM 771]
gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
DSM 771]
Length = 1267
Score = 112 bits (281), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 147/307 (47%), Gaps = 51/307 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A E+AE + K+ LA SH++R + IIG L + L L IR+ S+
Sbjct: 500 AKEEAEYSARVKSEFLANMSHEIRTPMNGIIGFCHLLMQTQLNSKQL-NYLTKIRSQSQH 558
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LLGI+N +++ SK+EAGKM + +FNL +++ ++ + + +KG++++ + G
Sbjct: 559 LLGIINDILDFSKLEAGKMSVEHVDFNLEEVIADLFYLLENQASQKGLELLANVQKGV-- 616
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
H++GD ++LKQ+L NL +N++KF+ +G+I +R + Q S++ +IS
Sbjct: 617 -PAHLKGDPLRLKQVLVNLANNAIKFSDQGNIFLRV----EKIDQSDSDSDQVIIS---- 667
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
F V+D G G+ +++ +F F Q +
Sbjct: 668 -----------------------------FSVEDNGIGLTEEQMQRLFNSFSQADSSTTR 698
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGV------CFRFNVLLTAVCERERPDT 676
G GLGL I + +V LM GEI+++ E GV F +L + + +R +
Sbjct: 699 KYGGTGLGLAISKYLVELMGGEISVS----SEYGVGSTFSFSLPFGILASGIQTNQRDNI 754
Query: 677 DEEDPRT 683
D + R
Sbjct: 755 DLKGSRV 761
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 74/128 (57%), Gaps = 14/128 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G L+VED+ I V +L +G +V NG+EA + V +A YD
Sbjct: 901 LEGNHILLVEDNLINQMVAVEILESVGISVDVAENGREAVEKV-----------RAGNYD 949
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MPVM+G EATR++R E D +PIIALTAHA++G + + GM+ ++KP
Sbjct: 950 LVLMDLQMPVMDGMEATRILRDEPLYRD--LPIIALTAHAISGFREQCIGLGMNDFISKP 1007
Query: 1080 -LQKDKLL 1086
L +D LL
Sbjct: 1008 FLPEDMLL 1015
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 10/130 (7%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G + L+V+D+ ++ ++ L L V +G+EA D L KEG+A +D
Sbjct: 756 LKGSRVLIVDDNEASQEILASYLVDLNFDVTVLSSGQEAIDL-------LVKEGEA--FD 806
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
+++D +MP ++G E RLI+++ + + I I+A +A+ + + + + G+ L KP
Sbjct: 807 ILVIDWKMPGLDGVETIRLIKEKMKLEKIPIIIMA-SAYDLDELRNVFSELGIKAFLNKP 865
Query: 1080 LQKDKLLDVV 1089
+L+D +
Sbjct: 866 HTPSQLMDAI 875
>gi|27367329|ref|NP_762856.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
gi|27358898|gb|AAO07846.1|AE016811_87 Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
Length = 716
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 141/304 (46%), Gaps = 48/304 (15%)
Query: 345 LVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHD 404
L ++F++ +I + L L + F + A AE + K+ LA SH+
Sbjct: 187 LAILFVSILI-IALVFKLYIDQVRLTRFTQQQSLDMQEAKRAAEASAETKSKFLANISHE 245
Query: 405 VRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELV 464
VR L AIIGL + H N + E + LI K LL ++N ++++SKI++GK+ L
Sbjct: 246 VRTPLNAIIGLSDTDHY-LNASEQIREYIDLIHRSGKHLLALMNDILDISKIDSGKLTLE 304
Query: 465 EEEFNLAQLLEEVVDMYYHVGIKKGVD-VVLDPCDGSVLGSCHVRGDRVKLKQILCNLVS 523
+ EF+L ++++ +++ GV+ ++ P D ++ GD ++L QI+ NL S
Sbjct: 305 QVEFSLKDIVDDTRVLFHERTQTPGVESFIITPQDCDMI----FYGDPLRLFQIISNLCS 360
Query: 524 NSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVER 583
N++KFT EG I V V+ R
Sbjct: 361 NAIKFTHEGQIKVAFTVQN----------------------------------------R 380
Query: 584 NPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKG 643
PN + + V DTG GI + + +F+EFVQ ++ G GLGL I Q + +LM+G
Sbjct: 381 GPNSV-LQICVSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQG 439
Query: 644 EIAI 647
+ I
Sbjct: 440 TLRI 443
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 13/128 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED I V + L +LG ++ NG+EA L+ +RK+ YD ++M
Sbjct: 590 QVLLVEDVHINQLVATHFLARLGIVPDMANNGEEA-------LARMRKQ----VYDLVLM 638
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MPVM+G +A ++I + EQ IIA+TA+ K AG D L KP D
Sbjct: 639 DIQMPVMDGLQAMKVI--QAEQLAKGAIIIAVTANVFEEDEKKYRQAGFDDILAKPFNVD 696
Query: 1084 KLLDVVKS 1091
L ++++
Sbjct: 697 ALQSLIET 704
>gi|407790135|ref|ZP_11137231.1| sensory box histidine kinase/response regulator [Gallaecimonas
xiamenensis 3-C-1]
gi|407205150|gb|EKE75126.1| sensory box histidine kinase/response regulator [Gallaecimonas
xiamenensis 3-C-1]
Length = 1260
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 137/293 (46%), Gaps = 61/293 (20%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED--ANPGTDLAENLGLIRTC 439
A E A+ S K+ LA SH++R + AI+G +L E A+P LG I+
Sbjct: 555 EAKEAADEASRAKSDFLANMSHEIRTPMNAILGFTQLAQEQDGASP------YLGKIQQA 608
Query: 440 SKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDG 499
SK LL ILN +++ SKIEAGK+ + + +F+L L + D++ ++K V++V +
Sbjct: 609 SKTLLRILNDILDFSKIEAGKLSIEKVDFHLEDTLTNLRDIFADKAVEKQVELVFN---- 664
Query: 500 SVLGSCHVR--GDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+L C R GD +L QIL NL+SN++KFT +G + V S +Q
Sbjct: 665 -LLPDCPSRLHGDPHRLSQILMNLISNALKFTEKGEVVV-------SVQQ---------- 706
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
P LQ F V DTG G+ ++ +F+ F Q
Sbjct: 707 -------------------------HQPGWLQ--FSVRDTGIGMTGEQVGKLFQAFSQAD 739
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCE 670
+ G GLGL I Q + LM G+I + E G RG F F++ L A E
Sbjct: 740 SSTTRRFGGTGLGLAICQRLCLLMGGDIEVR-SELG-RGSLFTFSLPLVAEGE 790
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 83/139 (59%), Gaps = 14/139 (10%)
Query: 952 DGKCSEKP-LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLR 1010
DG+ P L GKK L+V+D+ + +V + L K G + + ++G++A D + +DL
Sbjct: 933 DGQGLRYPALAGKKVLLVDDNDLNREVAQSFLVKAGVQVLLAKDGQDALDKLAGRGADL- 991
Query: 1011 KEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDA 1070
++MDC+MP+M+G+EATR +R++ + D +P+IA+TA+ M G + + A
Sbjct: 992 ----------VLMDCQMPIMDGFEATRRLRQQPQWQD--LPVIAMTANVMEGDKERCLAA 1039
Query: 1071 GMDFHLTKPLQKDKLLDVV 1089
GM+ H+ KPL + +V+
Sbjct: 1040 GMNDHIAKPLDVPLMFEVI 1058
>gi|428225288|ref|YP_007109385.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427985189|gb|AFY66333.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 926
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 135/283 (47%), Gaps = 36/283 (12%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN-LGLIRTCS 440
A + A+ + K+ LA+ SH++R L AI+G +L NP N L +I
Sbjct: 441 TAKDLADSANRAKSDFLARMSHELRTPLNAILGFTQLLLH--NPEMQSGNNELSIISRSG 498
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL ++N ++EMS+IEAG++ F+ +LLE V DM KG+ + + D
Sbjct: 499 EHLLDLINDILEMSRIEAGRLTYQAINFDFYRLLEAVEDMLQLRASSKGLTLSITHADNV 558
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
++ D KL+Q+L NL+ N++KFT GH+ + +V++ + D+ A +R
Sbjct: 559 ---PRYLHSDEKKLRQVLINLLGNAIKFTEAGHVQL--SVQRIISESDLAAGDR------ 607
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
E DD + + FEV DTG GI + +SIFE F Q E
Sbjct: 608 --------PEEADDTE-----------VHLLFEVSDTGPGIAPAEIDSIFEAFAQT-EAG 647
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+G GLGL I V LM G I + + +G F F++
Sbjct: 648 RKADQGTGLGLPISLKFVQLMGGTIQV--RSALGKGSTFSFDI 688
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D ++ +L LG + +NG+EA +A I M
Sbjct: 718 RILVVDDRLTNRQLLLQLLRPLGFEVREAQNGQEAV-----------AVWEAWQPHLIWM 766
Query: 1024 DCEMPVMNGWEATRLIRKE-EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MPVM+G+EATR I+ Q + IIALTA A + ++ AG D + KP+++
Sbjct: 767 DMRMPVMDGYEATRQIKAHLRGQATI---IIALTASAFDEERAIVLSAGCDDFVRKPMRE 823
Query: 1083 D 1083
+
Sbjct: 824 N 824
>gi|237746076|ref|ZP_04576556.1| two-component system sensor histidine kinase [Oxalobacter
formigenes HOxBLS]
gi|229377427|gb|EEO27518.1| two-component system sensor histidine kinase [Oxalobacter
formigenes HOxBLS]
Length = 790
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 143/302 (47%), Gaps = 60/302 (19%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
NA E AER + K+ LA+ SHD+R + AI GL+ + + N + E L + S
Sbjct: 265 NALEMAERANQVKSDFLARMSHDIRTPMNAITGLISIARDCVNDPVKIRECLNKLEFSSG 324
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
LL ++N +++MSKIE+G+MEL + EF+ ++++V Y KK + ++ +
Sbjct: 325 SLLSLINDILDMSKIESGRMELKKREFSFVAFIDDIVSAVYAQAQKKRIGFHVEIAE--- 381
Query: 502 LGSCHVR----GDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
+VR GD +KLKQI+ NL+SN++KFT G
Sbjct: 382 ----NVRELYSGDALKLKQIVSNLLSNAIKFTDSG------------------------- 412
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
++ + +EG ++R L+ F V D G G+ D +F F
Sbjct: 413 ----GRVELQVEEG-------QRIKRTCELV---FTVSDNGIGMEPDVIERVFLPF---- 454
Query: 618 ETALGHQE---GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV-CERER 673
E + H+E G GLGL IV S V LM G + + + EPG +G F V L V E+
Sbjct: 455 EQDVRHRENRGGSGLGLAIVHSYVQLMNGRVDV-ESEPG-KGSRFVAQVWLDPVEALPEQ 512
Query: 674 PD 675
PD
Sbjct: 513 PD 514
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 76/150 (50%), Gaps = 12/150 (8%)
Query: 943 SLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHV 1002
S+ A E L G++ L+VED+ I ++ +L K + NG+EA V
Sbjct: 640 SVTDTGASETTPDPEAALAGRRVLLVEDNDINREIAQTLLQARRLKVDTAGNGQEA---V 696
Query: 1003 CKILSDLRKEGKALPYDY--IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAM 1060
K L A+P Y I+MD +MPVMNG EATR+IR +P+I L+A+A
Sbjct: 697 EKFLL-------AMPGSYLAILMDVQMPVMNGLEATRIIRHSPRADAKTVPVIGLSANAF 749
Query: 1061 AGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
K ++AGM+ +L KP+ L V++
Sbjct: 750 EEDIEKSLEAGMNAYLAKPIDVPHLFQVLQ 779
>gi|262273972|ref|ZP_06051784.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
101886]
gi|262221782|gb|EEY73095.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
101886]
Length = 1112
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 142/304 (46%), Gaps = 61/304 (20%)
Query: 379 KQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LG 434
+ + A E AER + KT LA SH++R + I+G+ L E TDL + +
Sbjct: 460 EMVRAKEDAERANEAKTNFLAMMSHEIRTPMNGIVGMSNLLKE-----TDLNQQQSYFVD 514
Query: 435 LIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV-- 492
+ S LL I+N V++++KIEAGKM L+E+E L L+ + + +++ ++K + +
Sbjct: 515 TLIHSSNALLNIINDVLDLTKIEAGKMRLIEQESELTDLVHDALVVFHAKAVEKSLRLHC 574
Query: 493 VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552
++DP L D V+ QI+ NLV N++KFT G + V ++
Sbjct: 575 LIDPHLPRWLIL-----DPVRYTQIILNLVGNALKFTKHGSVMVHLSLV----------- 618
Query: 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
EG D+ EV D+G GIP+DK ++IFE
Sbjct: 619 ----------------TEGGSDM--------------LRLEVKDSGIGIPEDKLHNIFEN 648
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
F QV + +G GLGL + + + LM G+I + KE G F +V L V +
Sbjct: 649 FTQVDNSYSRSYQGTGLGLPVCRKFIELMDGDIRVVSKEA--VGTTFTADVPL--VVTPK 704
Query: 673 RPDT 676
RP T
Sbjct: 705 RPHT 708
Score = 94.4 bits (233), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 79/128 (61%), Gaps = 15/128 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G K L+ ED + + VL LG + + NG +A + + KA P+D I
Sbjct: 839 GLKVLIAEDHLVNQDLMVLVLNSLGCESTLADNGLQALE-----------QHKANPFDLI 887
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MDC+MP M+G+EATR IR +D ++PIIA+TA+A++G A + ++AGM+ HL KP
Sbjct: 888 LMDCQMPEMDGFEATRNIR----DFDQNVPIIAVTANALSGDAERCLEAGMNAHLAKPFT 943
Query: 1082 KDKLLDVV 1089
KD+L++++
Sbjct: 944 KDQLVNLM 951
>gi|149197352|ref|ZP_01874403.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Lentisphaera araneosa
HTCC2155]
gi|149139370|gb|EDM27772.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Lentisphaera araneosa
HTCC2155]
Length = 1182
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 140/279 (50%), Gaps = 48/279 (17%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
E+AE + K+ LA SH++R + AIIGL +L +D + G E L I+ S++LL
Sbjct: 548 EEAEAANTAKSEFLANMSHEIRTPMNAIIGLAQLGLKDKS-GEKHEEYLYKIKQSSENLL 606
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGS 504
I+N +++ SKIEAGKM + + F L ++LE+V + VD++ G + S
Sbjct: 607 TIINDILDFSKIEAGKMTMEKIPFKLNEVLEKVGGTLRGRMTNRNVDLIF---PGPL--S 661
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
+ GD ++L+Q+L NL+ N++K+T +GH+ + +V +K K+D I CL
Sbjct: 662 YKLVGDPLRLEQVLLNLLGNALKYTRKGHVIL--SVDEKELKEDSI---------CL--- 707
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
+F V+DTG G+ ++N +F+ F Q +
Sbjct: 708 --------------------------QFSVEDTGIGLSDTQRNRLFQPFAQGDTSTTRKY 741
Query: 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGV-CFRFN 662
G GLGL I + +V M GEI + D P + V CF N
Sbjct: 742 GGTGLGLSISKKIVKYMGGEIWL-DSMPHKGSVFCFTAN 779
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
YD I+MD +MP+M+G EAT+ IR D PIIA+TA+A + + GM+ L
Sbjct: 971 YDIILMDIQMPIMDGLEATKNIRVGGLNKDT--PIIAVTANAFVDQGYEYLHEGMNDRLI 1028
Query: 1078 KPLQKDKLLDVV 1089
KP + LL V+
Sbjct: 1029 KPFYNEDLLSVL 1040
>gi|418738449|ref|ZP_13294844.1| 7TM diverse intracellular signaling [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|410745942|gb|EKQ98850.1| 7TM diverse intracellular signaling [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
Length = 822
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 149/313 (47%), Gaps = 49/313 (15%)
Query: 360 IILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC 419
IIL+ K ++ LI+ A E AE+ S K+ LA SH++ + ++G+V+L
Sbjct: 406 IILLKKEIQQRRETEWELIQ---AKEIAEKASKVKSSFLANMSHEIWTPMNGVLGMVQLL 462
Query: 420 HEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVD 479
+ E + ++ +K LL I+N +++ SKIEAGK+ L +E F++ +L+E+ D
Sbjct: 463 G-TTKLNDEQKEYIQILSISAKSLLQIINDILDFSKIEAGKISLDKEVFSIHSVLDEIHD 521
Query: 480 MYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAA 539
+ Y + +K + + L+ D S + +V GD+++L+QIL NL N +KFT+ G + +
Sbjct: 522 LLYPLAKQKRIGLRLE--DKSEIQE-YVYGDQLRLRQILWNLTGNGIKFTNHGEVVL--- 575
Query: 540 VKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGK 599
NV K +SK + + +F V D+G
Sbjct: 576 ---------------NVSQKNISK----------------------DKISIKFTVSDSGI 598
Query: 600 GIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
GIP +KQ +F+ F Q + G GLGL I + +V L G + + KE G F
Sbjct: 599 GIPLEKQKQVFDAFSQSDTSTARKFGGSGLGLSITKQLVELQGGTLNLESKE--SYGSKF 656
Query: 660 RFNVLLTAVCERE 672
F + E E
Sbjct: 657 TFTITYDIPSESE 669
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K LV ED+ + L KLG V NG+E + K+ D +D I+M
Sbjct: 695 KILVAEDNETNCLLIERALKKLGYDPVVVHNGREVIE---KMQLDF--------FDMILM 743
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
D MP ++G EAT+ IR +++ + I IIALTA + + GM+ +LTKPL
Sbjct: 744 DIHMPEVDGIEATKWIRSQKQNTEFPI-IIALTADVIESNKEVYISKGMNDYLTKPL 799
>gi|183220935|ref|YP_001838931.1| putative signal transduction histidine kinase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189911031|ref|YP_001962586.1| two component response regulator sensor histidine kinase/response
regulator subunits [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167775707|gb|ABZ94008.1| Sensor histidine kinase and response regulator of a two component
complex [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167779357|gb|ABZ97655.1| Putative signal transduction histidine kinase; putative membrane
protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
Length = 1206
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 49/270 (18%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
+ + E+AE S+ K+ LA SH++R + AIIG E+ D NP + ++L IR +
Sbjct: 581 IESKEKAEMASITKSTFLANMSHEIRTPMNAIIGFTEVLLSDPNPNQN-KKHLETIRNSA 639
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
K LL +LN V+ +K++ G +EL +F+L L+++V + +KG++ + +
Sbjct: 640 KSLLRLLNDVLNSAKLDRGALELESVDFSLISLVDQVSSTFIMEAKRKGLEFLTHYSNEL 699
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ RGD ++++QIL NL+ N++KFT +G I
Sbjct: 700 ---EDYYRGDSLRIRQILTNLIGNAIKFTKQGKI-------------------------- 730
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+LF +G Q F + DTG GI +D+ IFE F Q +
Sbjct: 731 --ELFITPHKG-----------------QVLFHIQDTGIGIAEDRMEKIFEPFTQADVSM 771
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
G GLG I + +V LM G+I + K
Sbjct: 772 SRKFGGTGLGTTISKQLVELMGGKIWLESK 801
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
PL + L+V+D +++ ++ G K + RNG EAF + D + +
Sbjct: 830 PLPKLEILIVDDVKQNVELIQILMESNGHKVNIARNGLEAF----HLFQDNQ-------F 878
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYD-VHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
D ++MD +MP M+G EATR IR E Q + PIIAL+A + AGMD L+
Sbjct: 879 DLVLMDIQMPEMDGLEATRQIRSFEIQNNRTQTPIIALSASVFEEDKQQAKLAGMDGFLS 938
Query: 1078 KPLQKDKL-LDVVKSIDET 1095
KP+ D+L ++ K I +T
Sbjct: 939 KPIDVDELNQEISKWIQQT 957
>gi|427736328|ref|YP_007055872.1| signal transduction histidine kinase [Rivularia sp. PCC 7116]
gi|427371369|gb|AFY55325.1| signal transduction histidine kinase [Rivularia sp. PCC 7116]
Length = 568
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 140/297 (47%), Gaps = 49/297 (16%)
Query: 360 IILIAKAAKREMFLCAALIKQM-NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVEL 418
I L+AK+ + + KQ+ A E AE S K+ LA SH++R L AIIGL +L
Sbjct: 298 IGLLAKSLNHLIERVSKRTKQLEQAKELAEAASKAKSQFLANVSHELRTPLNAIIGLSQL 357
Query: 419 CHEDANP---GTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLE 475
EDA D A +L +I T K LL ++N ++++SKIEAGKM L E F + L+
Sbjct: 358 LQEDATDLGVEEDFAADLEIINTSGKHLLELINDILDLSKIEAGKMTLYPETFEVVSLIN 417
Query: 476 EVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHIS 535
+V K G + +D CDG LG+ + D+ +++Q+L NL+SN+ KFT G I+
Sbjct: 418 NLVLTIKSAIQKNGSSLEID-CDGE-LGTMY--QDQTRVQQVLLNLLSNASKFTRNGLIT 473
Query: 536 VRAAVKKKSFKQDIIA--SNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFE 593
++ +K DII S ++ F
Sbjct: 474 LKVRRQK-----DIIPSISGETIV----------------------------------FT 494
Query: 594 VDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650
V DTG G+ + + +F+ F Q + G GLGL I + +M G+I + K
Sbjct: 495 VKDTGIGMTEYQIEQLFKPFTQGDASTTKKYGGTGLGLAITRHFCQMMGGDIKVQSK 551
>gi|71908619|ref|YP_286206.1| PAS [Dechloromonas aromatica RCB]
gi|71848240|gb|AAZ47736.1| PAS protein [Dechloromonas aromatica RCB]
Length = 1560
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 145/326 (44%), Gaps = 59/326 (18%)
Query: 373 LCAALIKQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAE 431
L A +++N A ++AE S KT LA SH++R + AIIGL L +D +
Sbjct: 963 LVAERTEELNHAKDEAESASRAKTAFLANMSHEIRTPMNAIIGLTHLAQRST---SDPEQ 1019
Query: 432 N--LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG 489
N LG + + L+ I+N V+++SKIEA K++L +F+LAQL ++ K
Sbjct: 1020 NKRLGKVADAAHHLMSIINDVLDISKIEANKLKLENTDFSLAQLCTAACELVTQRADAKR 1079
Query: 490 VDV--VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547
+ V ++DP VL C GD ++++QIL N +SN++KFT G I +R +K
Sbjct: 1080 LPVTCIIDPALPPVL--C---GDPLRIQQILLNFLSNAIKFTERGKIDIRVQALQK---- 1130
Query: 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607
S ++ +C V DTG GI D Q
Sbjct: 1131 ----SGDGILIRC--------------------------------AVSDTGIGIASDAQR 1154
Query: 608 SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667
+F F Q + G GLGL I + + M GEI + D + G+ G F F L+
Sbjct: 1155 KLFVPFEQGDASTTRRYGGTGLGLAISRRLAEAMHGEIGV-DSKLGQ-GSTFWFTARLSV 1212
Query: 668 VCERERPDTDEEDPRTHNDWPQTGLH 693
+ D+ TH Q G H
Sbjct: 1213 GAGEQDAGYDQPASTTH----QLGAH 1234
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 13/125 (10%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G L+ ED+AI +V S +L G K ++ ++G EA LS R++ YD I
Sbjct: 1232 GAHILLAEDNAINAEVASDLLRGAGLKVDLAKDGAEA-------LSLARRQH----YDLI 1280
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MD +MPVM+G EATR IR IPI+A+TA+A + AGM+ H+ KP+
Sbjct: 1281 LMDMQMPVMDGLEATRQIRTLPGWG--KIPILAMTANAFDEDKDTCLAAGMNDHVAKPVA 1338
Query: 1082 KDKLL 1086
D L
Sbjct: 1339 PDVLF 1343
>gi|37677080|ref|NP_937476.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
gi|37201625|dbj|BAC97446.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
Length = 720
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 141/304 (46%), Gaps = 48/304 (15%)
Query: 345 LVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHD 404
L ++F++ +I + L L + F + A AE + K+ LA SH+
Sbjct: 191 LAILFVSILI-IALVFKLYIDQVRLTRFTQQQSLDMQEAKRAAEASAETKSKFLANISHE 249
Query: 405 VRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELV 464
VR L AIIGL + H N + E + LI K LL ++N ++++SKI++GK+ L
Sbjct: 250 VRTPLNAIIGLSDTDHY-LNASEQIREYIDLIHRSGKHLLALMNDILDISKIDSGKLTLE 308
Query: 465 EEEFNLAQLLEEVVDMYYHVGIKKGVD-VVLDPCDGSVLGSCHVRGDRVKLKQILCNLVS 523
+ EF+L ++++ +++ GV+ ++ P D ++ GD ++L QI+ NL S
Sbjct: 309 QVEFSLKDIVDDTRVLFHERTQTPGVESFIITPQDCDMI----FYGDPLRLFQIISNLCS 364
Query: 524 NSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVER 583
N++KFT EG I V V+ R
Sbjct: 365 NAIKFTHEGQIKVAFTVQN----------------------------------------R 384
Query: 584 NPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKG 643
PN + + V DTG GI + + +F+EFVQ ++ G GLGL I Q + +LM+G
Sbjct: 385 GPNSV-LQICVSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQG 443
Query: 644 EIAI 647
+ I
Sbjct: 444 TLRI 447
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 13/128 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED I V + L +LG ++ NG+EA L+ +RK+ YD ++M
Sbjct: 594 QVLLVEDVHINQLVATHFLARLGIVPDMANNGEEA-------LARMRKQA----YDLVLM 642
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MPVM+G +A ++I + EQ IIA+TA+ K AG D L KP D
Sbjct: 643 DIQMPVMDGLQAMKVI--QAEQLAKGAMIIAVTANVFEEDEKKYRQAGFDDILAKPFNVD 700
Query: 1084 KLLDVVKS 1091
L V+++
Sbjct: 701 ALQSVIET 708
>gi|253702042|ref|YP_003023231.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
gi|251776892|gb|ACT19473.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
Length = 718
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 145/300 (48%), Gaps = 55/300 (18%)
Query: 365 KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
K A+R L AL+K AE + K+ LA SH++R + +IGL +L E
Sbjct: 194 KVAQRTTELEEALVK-------AEAATAAKSVFLANMSHEIRTPMNGVIGLAKLLME--T 244
Query: 425 PGTDLAEN-LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYH 483
P ++ + + + C+++LL I+N ++++SK+EAG + L F+L + L+ + +
Sbjct: 245 PLDEVQQGYMESLSDCAENLLTIINEILDVSKVEAGMITLEAVVFDLRRFLDRSLQPFVL 304
Query: 484 VGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKK 543
G KKGV V L+ G L V GD V+L+Q+L NL+ N++KFT +G I++ AA
Sbjct: 305 RGQKKGVRVHLEADSG--LPELMV-GDPVRLRQVLANLLGNALKFTQQGSITLTAA---- 357
Query: 544 SFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPK 603
+ S N ++ +F V DTG GI
Sbjct: 358 -----LTGSGENRVA-------------------------------LKFSVADTGIGIAA 381
Query: 604 DKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+ IFE+F Q + G GLGL I +S+V LM GE+++ GE G F F++
Sbjct: 382 EAMEVIFEKFSQADSSTTRLYGGTGLGLSISKSLVELMGGELSV-QSTLGE-GSVFSFSI 439
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 72/130 (55%), Gaps = 12/130 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K LVV+D + +++ ++ K G +NG+EA + + + +D I
Sbjct: 467 KILVVDDVPLNQLISAKLIAKAGNHHISTAQNGREAVE-----------KWEQEYFDLIF 515
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MD +MPVM+G EATR+IR EE + I A+TA+AM + AGMD +L+KP+++
Sbjct: 516 MDVQMPVMDGLEATRIIRSREEGTGWRVHICAMTANAMKEDVTICTGAGMDSYLSKPVRE 575
Query: 1083 DKLLDVVKSI 1092
++ +++ +
Sbjct: 576 REIASMIRKV 585
>gi|169600681|ref|XP_001793763.1| hypothetical protein SNOG_03184 [Phaeosphaeria nodorum SN15]
gi|160705494|gb|EAT89915.2| hypothetical protein SNOG_03184 [Phaeosphaeria nodorum SN15]
Length = 2299
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 153/317 (48%), Gaps = 64/317 (20%)
Query: 375 AALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA--NPGTDLAEN 432
A I+ M E+A + K+ LA SH++R L +IG+ EL + T A++
Sbjct: 1802 AIAIRNMKLKEEAAKA---KSLFLANVSHELRTPLNGVIGMSELLKASILNSEQTGYADS 1858
Query: 433 LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDV 492
IR C+ LL I+N +++ SK+EAGKM ++E +L + + EVV + ++G+
Sbjct: 1859 ---IRVCADTLLSIINDLLDYSKLEAGKMSVMEMPLSLTETITEVVRALAYTNAERGLKT 1915
Query: 493 V----LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQD 548
V L+P V GD V+L QIL NL+SNS KFT +G ++VRA + +++
Sbjct: 1916 VEQLELNP-------EMMVMGDPVRLHQILMNLLSNSYKFTPKGSVTVRAVIDQET---- 1964
Query: 549 IIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNS 608
+ + D+ V DTG GIP +++
Sbjct: 1965 ---------------------DEYADV---------------TISVIDTGIGIPAEQKKK 1988
Query: 609 IFEEFVQVKETALGHQEGLGLGLGIVQSMV-HLMKGEIAIADKEPG-ERGVCFRFNVLLT 666
+F F Q++ ++ G GLGL I ++++ ++M G++ + ++ G +RG F++
Sbjct: 1989 LFLPFSQIESSSSRSYGGTGLGLSICKALIENVMHGKVWLDSRDSGPDRGTTVSFSLRFR 2048
Query: 667 AVCER---ERPDTDEED 680
V + +R +T E D
Sbjct: 2049 KVAKTSVLDRRNTRETD 2065
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 85/155 (54%), Gaps = 11/155 (7%)
Query: 949 AQSDGKC---SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKI 1005
AQS G C S P N + + ED+ I ++ + + KLG + + +G + D + +
Sbjct: 2080 AQS-GACIDLSTIPRNELRVCIAEDNLINQRIAISFVQKLGFRCDAYLDGLKTIDALERA 2138
Query: 1006 LSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVAS 1065
+ R P+ ++MD +MP +G+EAT+ IRK +I IIA+TA A+ G
Sbjct: 2139 SDNGR------PFHLVLMDVQMPHCDGYEATKRIRKHPNPDIRNILIIAMTASAIQGDRE 2192
Query: 1066 KIVDAGMDFHLTKPLQKDKLLDVVKS-IDETMEKQ 1099
K +++GM+ +L KP++ L +++S +++ EK+
Sbjct: 2193 KCLESGMNNYLAKPVRAQTLKALLESYLNKDQEKE 2227
>gi|153872627|ref|ZP_02001464.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
gi|152070909|gb|EDN68538.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
Length = 458
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 128/257 (49%), Gaps = 33/257 (12%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
+AE + K+ LA SH++R L I+G ++ + D E + +I + LL
Sbjct: 229 EAENANRAKSTFLANMSHELRTPLNGILGYTQILNRDRTLTEKQQEGIDIIHRSGEYLLT 288
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N ++++SKIEA K+EL +F+ +Q ++ + +++ +KG+ V +P G
Sbjct: 289 LINDILDLSKIEADKIELYPTDFHFSQFIQTITELFQMRAQQKGIAFVYEPLSHLPTG-- 346
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
VR D +L+QIL NL+ N++KFT +G ++++ V K+ + +A R
Sbjct: 347 -VRADEKRLRQILINLLGNAIKFTDKGGVTLKIGVLKEKGGRIKVAGERG---------- 395
Query: 566 FRNKEGFDDLDALHSVERNPNLLQF-----EFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
++G E N N Q EF++ DTG GI D IF F QV +
Sbjct: 396 --QEQG----------ESNQNYAQLPITTIEFQIIDTGAGIAADNLEKIFMPFQQVGDQ- 442
Query: 621 LGHQ-EGLGLGLGIVQS 636
H+ EG GLGL I Q+
Sbjct: 443 -NHRAEGTGLGLSITQN 458
>gi|374814377|ref|ZP_09718114.1| PAS domain-containing protein [Treponema primitia ZAS-1]
Length = 766
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 155/322 (48%), Gaps = 32/322 (9%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIR 437
+A ++AE ++ K+ LA SH++R L AIIG+ + GT E L I
Sbjct: 319 HAKQRAEEANVAKSSFLANMSHEIRTPLNAIIGMTTIAK-----GTHETERRDYCLEKIE 373
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY-YHVGIKK-GVDVVLD 495
S LLG++N +++MSKIEA K EL + EF +++L VV++ + V KK + V ++
Sbjct: 374 GASTHLLGVINDILDMSKIEADKFELSDTEFEFSKMLNRVVNVQEFRVAEKKQNLTVTVE 433
Query: 496 PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRN 555
P V D +L Q++ NL+SN++KFT EG S+ A +K D A R
Sbjct: 434 PDIPQ-----RVISDEQRLAQVITNLLSNAVKFTPEGG-SITIAARKLP---DSEAGLRM 484
Query: 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQ--FEFEVDDTGKGIPKDKQNSIFEEF 613
I + N D L + E + L+ E V DTG GI +++Q ++F+ F
Sbjct: 485 EIPAK-----YMNAAFPDRLPGAETGEESETALRCTLEIRVTDTGIGISQEQQANLFQSF 539
Query: 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV---LLTAVCE 670
QV + G GLGL I + +V +M G I I + EP ++G F F + L A
Sbjct: 540 QQVDGSISRKFGGTGLGLAISKRIVEMMNGTIWI-ESEP-DKGSSFIFTIQADLPAAALV 597
Query: 671 RERPDTDEEDPRTHNDWPQTGL 692
+ P P P T L
Sbjct: 598 TKLPGQTPAIPSETGALPGTAL 619
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 930 GAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKF 989
GA G ++ + S+ ++ A+ + G++ L+ ED I ++ +L G
Sbjct: 612 GALPGTALPAASSA--ELPAEHPAELPADDFTGRRILLAEDVDINREIVITILEPTGLVI 669
Query: 990 EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVH 1049
E +GK A+D EG YD I MD MP M+G+EATRLIR +
Sbjct: 670 EEAEDGKIAYDKFSA-----NPEG----YDLIFMDIHMPGMDGYEATRLIRALDNPRAKT 720
Query: 1050 IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
+PIIA+TA+ + + GM+ H+ KP+ D+++D+++
Sbjct: 721 VPIIAMTANVFKEDVERCLATGMNSHVGKPIDFDEVMDLLR 761
>gi|332532904|ref|ZP_08408776.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
haloplanktis ANT/505]
gi|332037570|gb|EGI74022.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
haloplanktis ANT/505]
Length = 1587
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 143/297 (48%), Gaps = 49/297 (16%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
+AE ++ K+ LA SH++R + ++G++EL ++ + + + + + LLG
Sbjct: 1063 KAEDAAIAKSQFLATMSHEIRTPMNGVLGMLELVQLES-LSKPIETKVDIAKKSAHSLLG 1121
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC 505
++N +++ SK EAGK+EL E FN L+ EV KG++++LD L
Sbjct: 1122 VINDILDFSKAEAGKIELEEINFNGRDLIGEVAAAQAFTAQDKGIEIILDLV---ALEPS 1178
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLF 565
+ GD +++Q++ NL+SN++KFTS+G + V A + K +
Sbjct: 1179 QLCGDPGRIRQVITNLLSNAVKFTSQGEVVVSAKINKVA--------------------- 1217
Query: 566 FRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625
+G L+F + D+G GI +KQ +F F QV +
Sbjct: 1218 ----QG----------------LEFVVSIKDSGIGISLEKQEQLFTPFSQVDASTTREYG 1257
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERER--PDTDEED 680
G GLGL I + + LM G I++ E G +G F ++LT ++ER P+ + E+
Sbjct: 1258 GSGLGLAICKQLCELMGGAISLT-SEAG-KGSTFTATIMLTPGDQKERYIPNINMEE 1312
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 9/132 (6%)
Query: 957 EKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
EK + L+VED+ I +V + +L KL + NG+ A D + + +
Sbjct: 1458 EKVQEPTQILLVEDNPINRQVATLMLKKLNCDVTIAENGQLAID--------ILESHDSG 1509
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYD-VHIPIIALTAHAMAGVASKIVDAGMDFH 1075
+ ++MDC+MPVM+G+ T IRK +I IIA+TA+AM + + AGMD +
Sbjct: 1510 FFKLVLMDCQMPVMDGFATTAAIRKGMAGIQHKNIRIIAITANAMDSDKERCITAGMDDY 1569
Query: 1076 LTKPLQKDKLLD 1087
L+KP+Q D L D
Sbjct: 1570 LSKPIQLDILKD 1581
Score = 44.3 bits (103), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 12/136 (8%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LVV+D+ V S L GAK + + +EA D + + + YD ++D
Sbjct: 1316 LVVDDNETNRIVISQQLEHWGAKVALACDAREALDMCAQ-----QYKSNNCMYDIAVLDM 1370
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP M+G E + + K E Y +P++ +T+ A A + +AG + KP+ L
Sbjct: 1371 QMPGMDGIELCKAL-KAHEHYK-SMPLVMMTSIAGMEGAQRYSNAGFQAYFPKPVTTADL 1428
Query: 1086 LDVVKSI-----DETM 1096
+ + I DET+
Sbjct: 1429 ISALSVITSNDADETL 1444
>gi|160935404|ref|ZP_02082786.1| hypothetical protein CLOBOL_00299 [Clostridium bolteae ATCC
BAA-613]
gi|158441762|gb|EDP19462.1| hypothetical protein CLOBOL_00299 [Clostridium bolteae ATCC
BAA-613]
Length = 948
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 131/263 (49%), Gaps = 44/263 (16%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
E+AE + K L++ SH++R + AI+GL +L + + ENLG IR+ S+ LL
Sbjct: 558 ERAEAANRAKGEFLSRMSHEIRTPMNAIVGLSDLTSMMDDVPEQVRENLGKIRSSSQYLL 617
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGS 504
+++ +++MS+IE+GKM + E F++ + +EE+ DM ++G++ ++ + +
Sbjct: 618 RLISDILDMSRIESGKMTVSNEAFSMNRAVEELEDMLTAEATRRGLEFTVEKD----VEN 673
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
+ GD ++L+Q+L NLVSN+ KFT G + + KS Q +I
Sbjct: 674 RTLMGDVIRLQQVLTNLVSNAFKFTPAGGSIIMRVTRTKSTNQQVI-------------- 719
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
++F+V D G GI + Q +F F QV
Sbjct: 720 -------------------------YKFQVIDNGVGISVENQKRVFGAFEQVGPN-YSKS 753
Query: 625 EGLGLGLGIVQSMVHLMKGEIAI 647
+G GLGL I +++V LM GE+ +
Sbjct: 754 QGTGLGLTISRTIVGLMGGELKL 776
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 950 QSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDL 1009
Q G L L+ ED+ + ++ + +L GA NGK+A + L
Sbjct: 810 QKAGGVESSCLEHINILLAEDNDLNAEIATELLKMKGASVRRAENGKQAVE--------L 861
Query: 1010 RKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVD 1069
+ Y I+MD +MP MNG EA R IR+ + Q V IPIIA+TA++ A +
Sbjct: 862 FMQSSPGTYHAILMDLQMPEMNGLEACRAIRRIQRQDAVSIPIIAMTANSFKEDADAAAE 921
Query: 1070 AGMDFHLTKPLQKDKLLDVVKSI 1092
AGMD +TKP+ + L V+ +
Sbjct: 922 AGMDGFVTKPVDVEYLYQVLDRV 944
>gi|359458510|ref|ZP_09247073.1| two-component hybrid sensor and regulator [Acaryochloris sp. CCMEE
5410]
Length = 805
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 139/302 (46%), Gaps = 47/302 (15%)
Query: 365 KAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDAN 424
+ A+R L + ++ A E AE S K LAK SH++R L AI+G ++ +D
Sbjct: 440 QVAQRTSELQQSNLELSQAKEAAEMASRAKGKFLAKMSHELRTPLNAILGFSQMMAQDTT 499
Query: 425 PGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHV 484
+ LI + LLG++N ++ ++K+E+GK EL E F L+ LLE V ++
Sbjct: 500 LSEANHKRNRLINQSGEHLLGLINDILSLAKLESGKQELRESPFKLSTLLETVEGIFRLR 559
Query: 485 GIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
+KG +V L + GD KL+Q+L NL+SN++KFT GHIS+R
Sbjct: 560 IEQKG--LVFRVESAPELPPSLI-GDAQKLRQVLINLLSNALKFTPTGHISLR------- 609
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
+ S+ P L FE++DTG+GI
Sbjct: 610 ---------------------------------IGSIP-TPAGLTLRFEIEDTGEGIAAS 635
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664
+ + +F F Q E+ + G GLGL I Q LM G+I ++ + +G F F
Sbjct: 636 ELHKLFVPFEQT-ESGEKSKAGTGLGLPISQQFAQLMGGDIKVSSQV--GQGTTFTFTAQ 692
Query: 665 LT 666
+T
Sbjct: 693 VT 694
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,385,175,462
Number of Sequences: 23463169
Number of extensions: 683017859
Number of successful extensions: 2124848
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 24602
Number of HSP's successfully gapped in prelim test: 57161
Number of HSP's that attempted gapping in prelim test: 1924481
Number of HSP's gapped (non-prelim): 165345
length of query: 1099
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 945
effective length of database: 8,745,867,341
effective search space: 8264844637245
effective search space used: 8264844637245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 83 (36.6 bits)