BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001330
(1099 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With Mg2+
Length = 206
Score = 104 bits (259), Expect = 3e-22, Method: Composition-based stats.
Identities = 66/177 (37%), Positives = 102/177 (57%), Gaps = 11/177 (6%)
Query: 926 LKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKP-----LNGKKFLVVEDDAIVLKVTSA 980
+ S +E+ + S + + + D + + KP L GK+ LVV+D+ I KV +
Sbjct: 20 MASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATG 79
Query: 981 VLGKLG-AKFEVCRNGKEAFDHVCKILSDLRKEGKA--LPYDYIMMDCEMPVMNGWEATR 1037
L K+G ++ E C +GKEA V + L+ ++G LP+DYI MDC+MP M+G+EATR
Sbjct: 80 KLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATR 139
Query: 1038 LIRKEEEQYDVHIPIIALTAHAMAG-VASKIVDAGMDFHLTKPLQKDKLLDVVKSID 1093
IRK E+ Y V PIIA++ H A + + AGMD L K L ++L +V++ I+
Sbjct: 140 EIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSL--NQLANVIREIE 194
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 35/151 (23%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+VED+ I + V +++ +LG ++ NG EA + + YD ++M
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAI-----------NSSSYDLVLM 58
Query: 1024 DCEMPVMNGWEATRLIRKEEEQ----------YDV--------------HIPIIALTAHA 1059
D MPV++G +ATRLIR EE D+ +PIIA+TA+
Sbjct: 59 DVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANT 118
Query: 1060 MAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
+A + + GMD ++KP+ KL + ++
Sbjct: 119 LAESSEECYANGMDSFISKPVTLQKLRECLQ 149
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 10/123 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K LVVED+ + +V +L G + E+ +G+EAFD V ++ S K Y+ I
Sbjct: 3 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTS------KGENYNMIF 56
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MD +MP ++G +T++IR++ PI+ALTA A + +++GM+ L+KP+++
Sbjct: 57 MDVQMPKVDGLLSTKMIRRD---LGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKR 113
Query: 1083 DKL 1085
KL
Sbjct: 114 PKL 116
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 10/123 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K LVVED+ + +V +L G + E+ +G+EAFD V ++ S K Y+ I
Sbjct: 4 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTS------KGENYNMIF 57
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MD +MP ++G +T++IR++ PI+ALTA A + +++GM+ L+KP+++
Sbjct: 58 MDVQMPKVDGLLSTKMIRRD---LGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKR 114
Query: 1083 DKL 1085
KL
Sbjct: 115 PKL 117
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk. Structure
At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 75/137 (54%), Gaps = 16/137 (11%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
KK L+VED+ + +K+ +L G + R G A + +E K D I+
Sbjct: 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALS--------IARENKP---DLIL 50
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MD ++P ++G E T+ ++++++ HIP++A+TA AM G +I + G + +++KP+
Sbjct: 51 MDIQLPEISGLEVTKWLKEDDDL--AHIPVVAVTAFAMKGDEERIREGGCEAYISKPISV 108
Query: 1083 DKLLDVVKSIDETMEKQ 1099
L+ +K + +E+Q
Sbjct: 109 VHFLETIKRL---LERQ 122
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
pdb|4EW8|B Chain B, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
Length = 268
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 70/285 (24%), Positives = 120/285 (42%), Gaps = 66/285 (23%)
Query: 373 LCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN 432
L +AL + A +AER + + F + S+++R L IIG EL E A+ ++ N
Sbjct: 22 LQSALADRSAALAEAER--LKRDF-VGNVSYELRTPLTTIIGYSELL-ERADGISERGRN 77
Query: 433 -LGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD 491
+ +R + L ++ V++M++I+AG+M L E+ ++ LL + GV
Sbjct: 78 HVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVT 137
Query: 492 VVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG---HISVRAAVKKKSFKQD 548
+ ++ C+ V +RGD +L Q L +LV N+++ T G +S R A
Sbjct: 138 LAVE-CEEDV---GLIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA--------- 184
Query: 549 IIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNS 608
L + +V DTG+G+P Q
Sbjct: 185 --------------------------------------LGEVRLDVSDTGRGVPFHVQAH 206
Query: 609 IFEEFVQVKETALGHQEXXXXXXXIVQSMVHLMKGEIAIADKEPG 653
IF+ FV G +V+++V L G +A+ + EPG
Sbjct: 207 IFDRFVGRDRGGPG------LGLALVKALVELHGGWVAL-ESEPG 244
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 19/126 (15%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LVV+D I ++ + LG LG + + +G +A + + K D+ ++ D
Sbjct: 132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDI-----------VLSD 180
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
MP M+G+ T+ IR Q + +P+I +TA+A+A + +++GMD L+KP+
Sbjct: 181 VNMPNMDGYRLTQRIR----QLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVT--- 233
Query: 1085 LLDVVK 1090
LDV+K
Sbjct: 234 -LDVIK 238
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 19/125 (15%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LVV+D I ++ + LG LG + + +G +A + + K D+ ++ D
Sbjct: 12 LVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDI-----------VLSDV 60
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
MP M+G+ T+ IR Q + +P+I +TA+A+A + +++GMD L+KP+
Sbjct: 61 NMPNMDGYRLTQRIR----QLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVT---- 112
Query: 1086 LDVVK 1090
LDV+K
Sbjct: 113 LDVIK 117
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED+ + + + L K +VC +G+E L++ P+D +++
Sbjct: 4 RVLVVEDERDLADLITEALKKEXFTVDVCYDGEEG---XYXALNE--------PFDVVIL 52
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +PV +GWE I K + V+ P++ LTA + K ++ G D +L KP
Sbjct: 53 DIXLPVHDGWE----ILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLR 108
Query: 1084 KLLDVVKSI 1092
+L+ V+++
Sbjct: 109 ELIARVRAL 117
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver Domain
Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L+ ED+ I V + L K V NG +A + + +D I+MD
Sbjct: 14 LIAEDNDICRLVAAKALEKCTNDITVVTNGLQAL-----------QAYQNRQFDVIIMDI 62
Query: 1026 EMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
+MPVM+G EA IR E ++ IIA+TA + A +D +++KPL ++
Sbjct: 63 QMPVMDGLEAVSEIRNYERTHNTKRASIIAITADT---IDDDRPGAELDEYVSKPLNPNQ 119
Query: 1085 LLDVV 1089
L DVV
Sbjct: 120 LRDVV 124
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A Novel
Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A Novel
Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A Novel
Cis- Autophosphorylation Mechanism
Length = 122
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
KK L+V+D A++ K+ S L K G + NG+ A + + + DL I+
Sbjct: 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDL-----------IV 51
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D MPVM+G+ + ++++EE IP+I LTA S + G + KP
Sbjct: 52 LDIMMPVMDGFTVLKKLQEKEEWK--RIPVIVLTAKGGEEDESLALSLGARKVMRKPFSP 109
Query: 1083 DKLLDVVKSI 1092
+ ++ VK +
Sbjct: 110 SQFIEEVKHL 119
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 15/129 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED+ + + + L K +VC +G+E + L++ P+D +++
Sbjct: 4 RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEG---MYMALNE--------PFDVVIL 52
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +PV +GWE + +R+ V+ P++ LTA + K ++ G D +L KP
Sbjct: 53 DIMLPVHDGWEILKSMRES----GVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLR 108
Query: 1084 KLLDVVKSI 1092
+L+ V+++
Sbjct: 109 ELIARVRAL 117
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
KK LVV+D+ + + L K G + +G EA + V ++ DL I+
Sbjct: 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDL-----------IL 51
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D +P +G E R +RK +YD +PII LTA ++ G D ++TKP
Sbjct: 52 LDIMLPNKDGVEVCREVRK---KYD--MPIIMLTAKDSEIDKVIGLEIGADDYVTKPFST 106
Query: 1083 DKLLDVVKS 1091
+LL VK+
Sbjct: 107 RELLARVKA 115
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
KK LVV+D+ + + L K G + +G EA + V ++ DL I+
Sbjct: 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDL-----------IL 51
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D +P +G E R +RK +YD +PII LTA ++ G D ++TKP
Sbjct: 52 LDIMLPNKDGVEVCREVRK---KYD--MPIIMLTAKDSEIDKVIGLEIGADDYVTKPFST 106
Query: 1083 DKLLDVVKS 1091
+LL VK+
Sbjct: 107 RELLARVKA 115
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
Length = 349
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 399 AKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEA 458
A+ +H++R + I G + + + L + + +I L I+ ++E SK E
Sbjct: 137 ARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSK-ER 195
Query: 459 GKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQIL 518
+E E FNL +L+ EV ++ K +D + + + V DR ++KQ+L
Sbjct: 196 QVLEFTE--FNLNELIREVYVLFEEKIRKMNIDFCFETDNEDL----RVEADRTRIKQVL 249
Query: 519 CNLVSNSMKFTSE-GHISV 536
NLV N+++ T E G I +
Sbjct: 250 INLVQNAIEATGENGKIKI 268
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
KK L+V+D A++ K+ S L K G + NG+ A + + + DL I+
Sbjct: 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDL-----------IV 51
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+ MPVM+G+ + ++++EE IP+I LTA S + G + KP
Sbjct: 52 LXIMMPVMDGFTVLKKLQEKEEWK--RIPVIVLTAKGGEEDESLALSLGARKVMRKPFSP 109
Query: 1083 DKLLDVVKSI 1092
+ ++ VK +
Sbjct: 110 SQFIEEVKHL 119
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 20/136 (14%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPY 1018
GK+ L+V+D A + + ++ K G +EV NG+EA + K L
Sbjct: 2 GKRVLIVDDAAFMRMMLKDIITKAG--YEVAGEATNGREAVEKY-----------KELKP 48
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D + MD MP MNG +A + I K D + II +A + + + AG + K
Sbjct: 49 DIVTMDITMPEMNGIDAIKEIMK----IDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVK 104
Query: 1079 PLQKDKLLDVVKSIDE 1094
P Q ++++ + + +
Sbjct: 105 PFQPSRVVEALNKVSK 120
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 20/134 (14%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPY 1018
GK+ L+V+D A + + ++ K G +EV NG+EA + K L
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAG--YEVAGEATNGREAVEKY-----------KELKP 47
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D + MD MP MNG +A + I K D + II +A + + + AG + K
Sbjct: 48 DIVTMDITMPEMNGIDAIKEIMK----IDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVK 103
Query: 1079 PLQKDKLLDVVKSI 1092
P Q ++++ + +
Sbjct: 104 PFQPSRVVEALNKV 117
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D++ + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TAHA AG ++ KP
Sbjct: 56 DWRMPNMDGLELLKTIRADGAM--SALPVLMVTAHAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus Radiodurans
Length = 249
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 16/130 (12%)
Query: 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDY 1020
N ++ LV+EDD + V L G DH + L K + P D
Sbjct: 36 NEQRILVIEDDHDIANVLRXDLTDAGY----------VVDHADSAXNGLIKAREDHP-DL 84
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I++D +P +G + + +RK +PII LTA +++ G D +L KP
Sbjct: 85 ILLDLGLPDFDGGDVVQRLRKNSA-----LPIIVLTARDTVEEKVRLLGLGADDYLIKPF 139
Query: 1081 QKDKLLDVVK 1090
D+LL VK
Sbjct: 140 HPDELLARVK 149
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+V+D + + ++ +L LG N +EA D + + + K+G +D+++
Sbjct: 14 KILIVDDFSTMRRIVKNLLRDLGFN-----NTQEADDGLTAL--PMLKKGD---FDFVVT 63
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M G + + IR +EE H+P++ +TA A + AG++ ++ KP
Sbjct: 64 DWNMPGMQGIDLLKNIRADEELK--HLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAA 121
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 122 TLKEKLDKIFERL 134
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
Length = 143
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV +D V +L K G K +C NG E ++L + +E YD +++
Sbjct: 16 RMLVADDHEANRMVLQRLLEKAGHKV-LCVNGAE------QVLDAMAEED----YDAVIV 64
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP MNG + + +R + + P++ L+A AG L KP+
Sbjct: 65 DLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAA 124
Query: 1084 KLLDVVKSI 1092
KLLD + +
Sbjct: 125 KLLDTLADL 133
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K L+V+D + + + V K G + NG +A D V K DL ++
Sbjct: 4 EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDL-----------VL 52
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D ++P M+G E I K + D +I +I +TA+ +A + + G H KP
Sbjct: 53 LDMKIPGMDGIE----ILKRMKVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDI 108
Query: 1083 DKLLDVVK 1090
D++ D VK
Sbjct: 109 DEIRDAVK 116
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D++ + ++T +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 3 KFLVVDDNSTMRRITRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 52
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 53 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 110
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 111 TLEEKLNKIFEKL 123
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 16/119 (13%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
++ LVV+DDA + ++ + VL G V +G +A V ++ DL ++
Sbjct: 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDL-----------VL 54
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+D +P MNG + R++R D +PI+ LTA +++G D ++ KP +
Sbjct: 55 LDLMLPGMNGIDVCRVLRA-----DSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFK 108
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
Length = 129
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 56
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A A + AG ++ KP
Sbjct: 57 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEADAENIKALAQAGASGYVVKPFTAA 114
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 115 TLEEKLNKIFEKL 127
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K L+V+D + + + + V K G + NG +A D V K DL ++
Sbjct: 2 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDL-----------VL 50
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D ++P M+G E I K + D +I +I +TA+ + + + G H KP
Sbjct: 51 LDMKIPGMDGIE----ILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDI 106
Query: 1083 DKLLDVVK 1090
D++ D VK
Sbjct: 107 DEIRDAVK 114
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f Complexed
With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f Complexed
With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f Complexed
With Mn2+
Length = 124
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K L+V+D + + + + V K G + NG +A D V K DL ++
Sbjct: 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDL-----------VL 52
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D ++P M+G E I K + D +I +I +TA+ + + + G H KP
Sbjct: 53 LDMKIPGMDGIE----ILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDI 108
Query: 1083 DKLLDVVK 1090
D++ D VK
Sbjct: 109 DEIRDAVK 116
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L KK L+VED K + +L K G E+ G+ A + V G P D
Sbjct: 3 LKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKV---------SGGWYP-D 52
Query: 1020 YIMMDCEM-PVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
I+MD E+ M+G + I++ E +P++ LTAH V KI ++ K
Sbjct: 53 LILMDIELGEGMDGVQTALAIQQISE-----LPVVFLTAHTEPAVVEKIRSVTAYGYVMK 107
Query: 1079 PLQKDKLLDVVK 1090
+ L+ +V+
Sbjct: 108 SATEQVLITIVE 119
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDQSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G E + IR + +P++ +TA+A AG ++ KP
Sbjct: 56 DWKMPNMDGLELLKTIRADGAM--SALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter Pylori
Length = 129
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEV-CRNGKEAFDHVCKILSDLRKEGKALP 1017
PL K LVV+D + + ++ L +LG + + +G EA++ + D + K L
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL-----DANADTKVL- 55
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
+ D MP MNG + + +R + + IPII +TA + AG++ ++
Sbjct: 56 ----ITDWNMPEMNGLDLVKKVRSDSRFKE--IPIIMITAEGGKAEVITALKAGVNNYIV 109
Query: 1078 KPLQ----KDKLLDVVKSID 1093
KP K+KL V+ + D
Sbjct: 110 KPFTPQVLKEKLEVVLGTND 129
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K L+V+D + + + V K G + NG +A D V K DL ++
Sbjct: 4 EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDL-----------VL 52
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D ++P M+G E I K + D +I +I +TA+ + + + G H KP
Sbjct: 53 LDMKIPGMDGIE----IAKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDI 108
Query: 1083 DKLLDVVK 1090
D++ D VK
Sbjct: 109 DEIRDAVK 116
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At 1.86
A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At 1.86
A Resolution
Length = 136
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 21/132 (15%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCR--NGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
L+V+DD V + VL GA +EV R +G+EA + K L D ++
Sbjct: 7 LLIVDDDDTVAEXLELVL--RGAGYEVRRAASGEEALQQIYKNLPDA-----------LI 53
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV--DAGMDFHLTKPL 1080
D +P ++G+ + +R + +PI+ LTA +++KI +AG + +L KP
Sbjct: 54 CDVLLPGIDGYTLCKRVR--QHPLTKTLPILXLTAQG--DISAKIAGFEAGANDYLAKPF 109
Query: 1081 QKDKLLDVVKSI 1092
+ +L+ VK+I
Sbjct: 110 EPQELVYRVKNI 121
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K L+V+D + + + V K G + NG +A D V K DL ++
Sbjct: 4 EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDL-----------VL 52
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D ++P M+G E I K + D +I +I +TA+ + + + G H KP
Sbjct: 53 LDMKIPGMDGIE----ILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDI 108
Query: 1083 DKLLDVVK 1090
D++ D VK
Sbjct: 109 DEIRDAVK 116
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K L+V+D + + + V K G + NG +A D V K DL ++
Sbjct: 6 EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDL-----------VL 54
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D ++P M+G E I K + D +I +I +TA+ + + + G H KP
Sbjct: 55 LDMKIPGMDGIE----ILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDI 110
Query: 1083 DKLLDVVK 1090
D++ D VK
Sbjct: 111 DEIRDAVK 118
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r Complexed
With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r Complexed
With Bef3- And Mn2+
Length = 128
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D++ + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 56 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+PL GK+ L+VED+ + + + LGA + +G +A + + G P
Sbjct: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL----------GGFTP 52
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
D ++ D MP MNG + IR +Q P++ ++A +K + G++ L
Sbjct: 53 -DLMICDIAMPRMNGLKLLEHIRNRGDQT----PVLVISATENMADIAKALRLGVEDVLL 107
Query: 1078 KPLQ 1081
KP++
Sbjct: 108 KPVK 111
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D++ + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 56 DWMMPNMDGLELLKTIRADGAM--SALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 15/114 (13%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGK--LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
L K+ LVVED+ + + VL + + + E NG +A V +
Sbjct: 3 LRSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQV-----------QQAK 51
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAG 1071
YD I++D +P+ NG+E +RK + H PI+ LT + A + AG
Sbjct: 52 YDLIILDIGLPIANGFEVXSAVRKPGA--NQHTPIVILTDNVSDDRAKQCXAAG 103
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 258
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 110/268 (41%), Gaps = 52/268 (19%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPG--TDLAENLGLIRTCSKD 442
E+ +R KT +A SH++R L AI E + + L E L +I S
Sbjct: 11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNH 70
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD---PCDG 499
L +LN +++ S++E +++ E+ +L L+E V+ V+V+ + PC
Sbjct: 71 LENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPC-- 128
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
D +++Q+L NL++N +K++ K+D A ++ V
Sbjct: 129 ----PVEAYIDPTRIRQVLLNLLNNGVKYS----------------KKD--APDKYV--- 163
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
K+ K+G +L V+D G GIP ++ IFE+F +V +
Sbjct: 164 ---KVILDEKDG--------------GVLII---VEDNGIGIPDHAKDRIFEQFYRVDSS 203
Query: 620 ALGHQEXXXXXXXIVQSMVHLMKGEIAI 647
I + +V L G I +
Sbjct: 204 LTYEVPGTGLGLAITKEIVELHGGRIWV 231
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D++ + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 3 KFLVVDDNSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 52
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ TA A AG ++ KP
Sbjct: 53 DWNMPNMDGLELLKTIRADGAM--SALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAA 110
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 111 TLEEKLNKIFEKL 123
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59 And
89: N59d E89y
Length = 132
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG F ++ D + K+ +A Y +++
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKL--------QAGGYGFVIS 59
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G E + IR + +P++ +TA+A AG ++ KP
Sbjct: 60 DWDMPNMDGLELLKTIRADGAMS--ALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAA 117
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 118 TLEEKLNKIFEKL 130
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 22/144 (15%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED + +L + G + E RNG+EA + LS R D I+
Sbjct: 9 EILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAV----RFLSLTRP-------DLIIS 57
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D MP M+G+ R ++ Q D+ IP+I LT + + ++ G D +TKP +
Sbjct: 58 DVLMPEMDGYALCRWLKG---QPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKD 114
Query: 1083 -------DKLLDVVKSIDETMEKQ 1099
+LL VK +E ++
Sbjct: 115 VVLASHVKRLLSGVKRTEERYSRE 138
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
Histidine Kinase Protein
Length = 258
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 116/286 (40%), Gaps = 56/286 (19%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPG--TDLAENLGLIRTCSKD 442
E+ +R KT +A SH++R L AI E + + L E L +I S
Sbjct: 11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNH 70
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD---PCDG 499
L +LN +++ S++E +++ E+ +L L+E V+ V+V+ + PC
Sbjct: 71 LENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPC-- 128
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISK 559
D +++Q+L NL++N +K++ K+D A ++ V
Sbjct: 129 ----PVEAYIDPTRIRQVLLNLLNNGVKYS----------------KKD--APDKYV--- 163
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
K+ K+G +L V+D G GIP ++ IFE+F +V +
Sbjct: 164 ---KVILDEKDG--------------GVLII---VEDNGIGIPDHAKDRIFEQFYRVDSS 203
Query: 620 ALGHQEXXXXXXXIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
I + +V L G I + E G RF V +
Sbjct: 204 LTYEVPGTGLGLAITKEIVELHGGRIWVE----SEVGKGSRFFVWI 245
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of Heli
Pylori
Length = 129
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEV-CRNGKEAFDHVCKILSDLRKEGKALP 1017
PL K LVV+D + + ++ L +LG + + +G EA++ + D + K L
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL-----DANADTKVL- 55
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
+ D MP MNG + + +R + + IPII +T + AG++ ++
Sbjct: 56 ----ITDWNMPEMNGLDLVKKVRSDSRFKE--IPIIMITTEGGKAEVITALKAGVNNYIV 109
Query: 1078 KPLQ----KDKLLDVVKSID 1093
KP K+KL V+ + D
Sbjct: 110 KPFTPQVLKEKLEVVLGTND 129
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89q
Length = 132
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG F ++ D + K+ +A Y +++
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKL--------QAGGYGFVIS 59
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 60 DWDMPNMDGLELLKTIRADGAMS--ALPVLMVTAQAKKENIIAAAQAGASGYVVKPFTAA 117
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 118 TLEEKLNKIFEKL 130
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 56 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG F ++ D + K+ +A Y +++
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKL--------QAGGYGFVIS 59
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 60 DWDMPNMDGLELLKTIRADGAMS--ALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAA 117
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 118 TLEEKLNKIFEKL 130
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation Of
The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation Of
The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 56
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 57 DWRMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 114
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 115 TLEEKLNKIFEKL 127
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K L+V+D + + + + V K G + NG +A D V K DL ++
Sbjct: 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDL-----------VL 52
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+ ++P M+G E I K + D +I +I +TA+ + + + G H KP
Sbjct: 53 LXMKIPGMDGIE----ILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDI 108
Query: 1083 DKLLDVVK 1090
D++ D VK
Sbjct: 109 DEIRDAVK 116
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D++ + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 56 DWMMPNMDGLELLKTIRADGAM--SALPVLMVTALAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 56 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTPA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 56
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 57 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTPA 114
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 115 TLEEKLNKIFEKL 127
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY-DY 1020
++ LVVED+A + ++ VL + G F+ E +D L++ P+ D
Sbjct: 2 ARRILVVEDEAPIREMVCFVLEQNG--FQPVE--AEDYDSAVNQLNE--------PWPDL 49
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I++D +P +G + + +++E D IP++ LTA + ++ G D ++TKP
Sbjct: 50 ILLDWMLPGGSGIQFIKHLKRESMTRD--IPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 1081 QKDKLLDVVKSI 1092
+L+ +K++
Sbjct: 108 SPKELVARIKAV 119
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY-DY 1020
++ LVVED+A + ++ VL + G F+ E +D L++ P+ D
Sbjct: 2 ARRILVVEDEAPIREMVCFVLEQNG--FQPVE--AEDYDSAVNQLNE--------PWPDL 49
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I++D +P +G + + +++E D IP++ LTA + ++ G D ++TKP
Sbjct: 50 ILLDWMLPGGSGIQFIKHLKRESMTRD--IPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 1081 QKDKLLDVVKSI 1092
+L+ +K++
Sbjct: 108 SPKELVARIKAV 119
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein In
Aqueous Solution By Nuclear Magnetic Resonance Methods
Length = 129
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 56
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 57 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 114
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 115 TLEEKLNKIFEKL 127
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And Dynamics
Of Chemotaxis Y Protein Using Three-And Four-Dimensional
Heteronuclear (13c,15n) Nmr Spectroscopy
Length = 128
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 56 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 56
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 57 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 114
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 115 TLEEKLNKIFEKL 127
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 56 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In Complex
With Bef3 And The Effect Of Ph On Bef3 Binding, Possible
Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
KK L+V+D+ + + + K G + NG+EA + +A D I+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQF-----------EAEQPDIII 50
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D +P ++G E + IRK +PI+ L+A ++ G D ++TKP
Sbjct: 51 LDLMLPEIDGLEVAKTIRKTS-----SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSN 105
Query: 1083 DKLLDVVKSI 1092
+L VK++
Sbjct: 106 RELQARVKAL 115
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89k
Length = 132
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG F ++ D + K+ +A Y +++
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKL--------QAGGYGFVIS 59
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 60 DWDMPNMDGLELLKTIRADGAMS--ALPVLMVTAKAKKENIIAAAQAGASGYVVKPFTAA 117
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 118 TLEEKLNKIFEKL 130
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR +P++ +TA A AG ++ KP
Sbjct: 56 DWNMPNMDGLELLKTIRAXXAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG F ++ D + K+ +A + +I+
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKL--------QAGGFGFIIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 56 DWNMPNMDGLELLKTIRADSAMS--ALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14 Replaced
By Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By
Gly
Length = 129
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 7 KFLVVDDGGTGRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 56
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 57 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 114
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 115 TLEEKLNKIFEKL 127
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response Regulator
Of Bacterial Chemotaxis
Length = 128
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G + +I+
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG-----FNNVEEAEDGV-DALNKLQAGG----FGFIIC 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 56 DWNMPNMDGLELLKTIRADSAMS--ALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G + +I+
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELG-----FNNVEEAEDGV-DALNKLQAGG----FGFIIS 56
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 57 DWNMPNMDGLELLKTIRADSAMS--ALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 114
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 115 TLEEKLNKIFEKL 127
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
VV+DD V + +L G FEV E FD L R E + +++D
Sbjct: 8 FVVDDDMSVREGLRNLLRSAG--FEV-----ETFDCASTFLEHRRPE----QHGCLVLDM 56
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
MP M+G E ++++ IPI+ +TAH + + + AG L KP ++ L
Sbjct: 57 RMPGMSGIE----LQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQAL 112
Query: 1086 LDVVK 1090
LD ++
Sbjct: 113 LDAIE 117
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of Chey
Length = 130
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 8 KFLVVADFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 57
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 58 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 115
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 116 TLEEKLNKIFEKL 128
>pdb|3CZ5|A Chain A, Crystal Structure Of Two-component Response Regulator, Luxr
Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|B Chain B, Crystal Structure Of Two-component Response Regulator, Luxr
Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|C Chain C, Crystal Structure Of Two-component Response Regulator, Luxr
Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|D Chain D, Crystal Structure Of Two-component Response Regulator, Luxr
Family, From Aurantimonas Sp. Si85-9a1
Length = 153
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D ++MD +P G EATR IR Q+D I+ T H + A K +AG ++TK
Sbjct: 53 DIVVMDLTLPGPGGIEATRHIR----QWDGAARILIFTMHQGSAFALKAFEAGASGYVTK 108
Query: 1079 PLQKDKLLDVVKSI 1092
+L+ +++I
Sbjct: 109 SSDPAELVQAIEAI 122
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 56
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +T+ A AG ++ KP
Sbjct: 57 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTSEAKKENIIAAAQAGASGYVVKPFTAA 114
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 115 TLEEKLNKIFEKL 127
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17 Replaced
By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17 Replaced
By Gly (M17g)
Length = 130
Score = 38.9 bits (89), Expect = 0.018, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 8 KFLVVDDFSTGRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 57
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 58 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 115
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 116 TLEEKLNKIFEKL 128
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 38.9 bits (89), Expect = 0.018, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG + KP
Sbjct: 56 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 56
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +T A AG ++ KP
Sbjct: 57 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTTEAKKENIIAAAQAGASGYVVKPFTAA 114
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 115 TLEEKLNKIFEKL 127
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 56
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +T A AG ++ KP
Sbjct: 57 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTVEAKKENIIAAAQAGASGYVVKPFTAA 114
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 115 TLEEKLNKIFEKL 127
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K L+V+D + + + V K G + NG +A D V K DL ++
Sbjct: 4 EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDL-----------VL 52
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D ++P M+G E I K + D +I +I +TA+ + + + G KP
Sbjct: 53 LDMKIPGMDGIE----ILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDI 108
Query: 1083 DKLLDVVK 1090
D++ D VK
Sbjct: 109 DEIRDAVK 116
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 38.5 bits (88), Expect = 0.022, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 21/131 (16%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEV---CRNGKEAFDHVCKILSDLRKEGKALPYD 1019
++ L+ ED+A++ + +L + G +E+ +G+EA + L++L K D
Sbjct: 14 RRVLIAEDEALIRMDLAEMLREEG--YEIVGEAGDGQEAVE-----LAELHKP------D 60
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
++MD +MP +G +A I + PI+ LTA + + + DAG +L KP
Sbjct: 61 LVIMDVKMPRRDGIDAASEIASKRIA-----PIVVLTAFSQRDLVERARDAGAMAYLVKP 115
Query: 1080 LQKDKLLDVVK 1090
L+ ++
Sbjct: 116 FSISDLIPAIE 126
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With Mg(2+)-
Bef (Wild Type)
Length = 116
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 17/130 (13%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K+ LVV+D+ + ++ L + G + + NG+EA + K S YD ++
Sbjct: 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEA---LKKFFSG--------NYDLVI 50
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D EMP ++G E IRK+++ D I ++ +H + ++S D ++ K
Sbjct: 51 LDIEMPGISGLEVAGEIRKKKK--DAKIILLTAYSHYRSDLSSWAADE----YVVKSFNF 104
Query: 1083 DKLLDVVKSI 1092
D+L + VK +
Sbjct: 105 DELKEKVKKL 114
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 56
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +T A AG ++ KP
Sbjct: 57 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTMEAKKENIIAAAQAGASGYVVKPFTAA 114
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 115 TLEEKLNKIFEKL 127
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 16/129 (12%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LV+EDD + + L G K E GKEA+ K+LS+ ++ +++
Sbjct: 4 LVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAY----KLLSEKH-------FNVVLLXL 52
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+P +NG E + I++ + +V I +T H A + + G LTKP +++
Sbjct: 53 LLPDVNGLEILKWIKERSPETEV----IVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEI 108
Query: 1086 -LDVVKSID 1093
L + K+I+
Sbjct: 109 ELTINKAIE 117
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 38.1 bits (87), Expect = 0.029, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ + A A AG ++ KP
Sbjct: 56 DWNMPNMDGLELLKTIRADGAM--SALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter Pylori
Length = 129
Score = 38.1 bits (87), Expect = 0.031, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEV-CRNGKEAFDHVCKILSDLRKEGKALP 1017
PL K LVV+D + + ++ L +LG + + +G EA++ + D + K L
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL-----DANADTKVL- 55
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
+ MP MNG + + +R + + IPII +T + AG++ ++
Sbjct: 56 ----ITAWNMPEMNGLDLVKKVRSDSRFKE--IPIIMITTEGGKAEVITALKAGVNNYIV 109
Query: 1078 KPLQ----KDKLLDVVKSID 1093
KP K+KL V+ + D
Sbjct: 110 KPFTPQVLKEKLEVVLGTND 129
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In
Complex With Adp And Mg Ion (Trigonal)
pdb|3A0W|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0W|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0X|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 1: Ammomium Phosphate, Monoclinic)
pdb|3A0Y|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Y|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Z|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
pdb|3A0Z|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
Length = 152
Score = 37.7 bits (86), Expect = 0.038, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 467 EFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSM 526
EFNL +L+ EV ++ K +D + + + V DR ++KQ+L NLV N++
Sbjct: 5 EFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDL----RVEADRTRIKQVLINLVQNAI 60
Query: 527 KFTSE-GHISV 536
+ T E G I +
Sbjct: 61 EATGENGKIKI 71
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 37.4 bits (85), Expect = 0.041, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+ + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDKFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 56 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 1014 KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
+ LP D I++D MP M+G+ R ++ + HIP++ +TA G + +++G
Sbjct: 43 RDLP-DIILLDVMMPGMDGFTVCRKLKDDPTTR--HIPVVLITALDGRGDRIQGLESGAS 99
Query: 1074 FHLTKPLQKDKLLDVVKSI 1092
LTKP+ L V+S+
Sbjct: 100 DFLTKPIDDVMLFARVRSL 118
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 37.4 bits (85), Expect = 0.047, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 56 XWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 37.4 bits (85), Expect = 0.047, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 56
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 57 XWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 114
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 115 TLEEKLNKIFEKL 127
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From Bacillus
Subtilis
Length = 136
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
KK LVV+D+ ++ + L + G +G+EA K+ + D I
Sbjct: 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEAL-----------KKAETEKPDLI 51
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
++D +P ++G E + +R Q + PI+ LTA ++ G D ++TKP
Sbjct: 52 VLDVMLPKLDGIEVCKQLR----QQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFS 107
Query: 1082 KDKLLDVVKSI 1092
++ VK+I
Sbjct: 108 PREVNARVKAI 118
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
KK L+V+D+ + + + K G + NG+EA + +A D I+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQF-----------EAEQPDIII 50
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+ +P ++G E + IRK +PI+ L+A ++ G D ++TKP
Sbjct: 51 LXLMLPEIDGLEVAKTIRKTS-----SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSN 105
Query: 1083 DKLLDVVKSI 1092
+L VK++
Sbjct: 106 RELQARVKAL 115
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp
Length = 459
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 1014 KALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073
+ LP D I++D MP M+G+ R ++ + HIP++ +TA G + +++G
Sbjct: 44 RDLP-DIILLDVMMPGMDGFTVCRKLKDDPTTR--HIPVVLITALDGRGDRIQGLESGAS 100
Query: 1074 FHLTKPLQKDKLLDVVKSI 1092
LTKP+ L V+S+
Sbjct: 101 DFLTKPIDDVMLFARVRSL 119
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of Chey
Length = 127
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+ + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 5 KFLVVDAFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 54
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 55 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 112
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 113 TLEEKLNKIFEKL 125
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of Chey
Length = 128
Score = 37.0 bits (84), Expect = 0.058, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 56 AWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 14/130 (10%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K+ LVV+DD + VL + + E+ NG FD K+ +
Sbjct: 7 KRILVVDDDQAMAAAIERVLKRDHWQVEIAHNG---FDAGIKL--------STFEPAIMT 55
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D MP ++G + R +R+ + + P I + + + V G D +L KP
Sbjct: 56 LDLSMPKLDGLDVIRSLRQNKV---ANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDN 112
Query: 1083 DKLLDVVKSI 1092
D LLD + +
Sbjct: 113 DALLDRIHDL 122
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 36.6 bits (83), Expect = 0.078, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ + A A AG + KP
Sbjct: 56 DWNMPNMDGLELLKTIRADGAM--SALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 36.6 bits (83), Expect = 0.084, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY-DY 1020
++ LVVED+A + ++ VL + G F+ E +D L++ P+ D
Sbjct: 2 ARRILVVEDEAPIREMVCFVLEQNG--FQPVE--AEDYDSAVNQLNE--------PWPDL 49
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I++ +P +G + + +R+E D IP++ LTA + ++ G D +TKP
Sbjct: 50 ILLAWMLPGGSGIQFIKHLRRESMTRD--IPVVMLTARGEEEDRVRGLETGADDCITKPF 107
Query: 1081 QKDKLLDVVKSI 1092
+L+ +K++
Sbjct: 108 SPKELVARIKAV 119
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 28/140 (20%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGA-----KFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
K VV+DD +LK S L +LG E N +EAF HV
Sbjct: 4 KIAVVDDDKNILKKVSEKLQQLGRVKTFLTGEDFLNDEEAF-HV---------------- 46
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
+++D +P +G+E R I++ + +I LT + K +AG D ++TK
Sbjct: 47 --VVLDVXLPDYSGYEICRXIKETRPE----TWVILLTLLSDDESVLKGFEAGADDYVTK 100
Query: 1079 PLQKDKLLDVVKSIDETMEK 1098
P + LL VK E +K
Sbjct: 101 PFNPEILLARVKRFLEREKK 120
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
L++ +D +L+ L KL FE+ + D + K++ + + +++D
Sbjct: 6 LIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAM-KLIEEYNP-------NVVILDI 57
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
EMP M G E IRK+ ++I +I +T G K V +D ++ K ++L
Sbjct: 58 EMPGMTGLEVLAEIRKKH----LNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEEL 113
Query: 1086 LDVVKSID 1093
++ + ++
Sbjct: 114 VETINKVN 121
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
G K LV++++ + VT +L LG + + +E +++S K
Sbjct: 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECL----RVVSHEHK-------- 52
Query: 1020 YIMMDCEMPVMNGWE-ATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
+ MD MP + ++ A R+ K +Q ++AL+ + K + G+D L K
Sbjct: 53 VVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLK 112
Query: 1079 PLQKDKLLDVVKSIDE 1094
P+ D + DV+ + E
Sbjct: 113 PVSLDNIRDVLSDLLE 128
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D A + V ++ +V K+ + V K + L D I M
Sbjct: 27 RVLVVDDSAFMRMVLKDIIDS-QPDMKVVGFAKDGLEAVEKAIE--------LKPDVITM 77
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
D EMP +NG EA +LI K+ + + +LT A + + +DF +TKP
Sbjct: 78 DIEMPNLNGIEALKLIMKKAPTRVIMVS--SLTEEGAAITIEALRNGAVDF-ITKP 130
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY-DY 1020
++ LVVE +A + ++ VL + G F+ E +D L++ P+ D
Sbjct: 2 ARRILVVEAEAPIREMVCFVLEQNG--FQPVE--AEDYDSAVNQLNE--------PWPDL 49
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I+++ +P +G + + +++E D IP++ LTA + ++ G D ++TKP
Sbjct: 50 ILLEWMLPGGSGIQFIKHLKRESMTRD--IPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 1081 QKDKLLDVVKSI 1092
+L+ +K++
Sbjct: 108 SPKELVARIKAV 119
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With Mg(2+)-
Bef (Semet, L89m)
Length = 116
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K+ LVV+D+ + ++ L + G + + NG+EA + K S YD ++
Sbjct: 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEA---LKKFFSG--------NYDLVI 50
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D E P ++G E IRK+++ D I ++ +H + +S D ++ K
Sbjct: 51 LDIEXPGISGLEVAGEIRKKKK--DAKIILLTAYSHYRSDXSSWAADE----YVVKSFNF 104
Query: 1083 DKLLDVVKSI 1092
D+L + VK +
Sbjct: 105 DELKEKVKKL 114
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 15/128 (11%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K+ LVV+D+ + SA+L + G + + +EA K+ K L + I+
Sbjct: 2 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREA-----------EKKIKELFFPVIV 50
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D MP +G I KE V +I +T H A K + G L KP
Sbjct: 51 LDVWMPDGDGVNFIDFI-KENSPDSV---VIVITGHGSVDTAVKAIKKGAYEFLEKPFSV 106
Query: 1083 DKLLDVVK 1090
++ L +K
Sbjct: 107 ERFLLTIK 114
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
MP M+G E + IR + +P++ + A A AG ++ KP
Sbjct: 56 XWNMPNMDGLELLKTIRADGAM--SALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY-DY 1020
++ LVVED+A + ++ VL + G F+ E +D L++ P+ D
Sbjct: 2 ARRILVVEDEAPIREMVCFVLEQNG--FQPVE--AEDYDSAVNQLNE--------PWPDL 49
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I++ +P +G + + +++E D IP++ LTA + ++ G D +TKP
Sbjct: 50 ILLAWMLPGGSGIQFIKHLKRESMTRD--IPVVMLTARGEEEDRVRGLETGADDCITKPF 107
Query: 1081 QKDKLLDVVKSI 1092
+L+ +K++
Sbjct: 108 SPKELVARIKAV 119
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli Phop
Length = 121
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVVED+A++ + G + + + KEA ++ + + D+ ++
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDI-----------AIV 50
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +P +G R R DV +PI+ LTA +++ AG D ++TKP +
Sbjct: 51 DLGLPDEDGLSLIRRWRSN----DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIE 106
Query: 1084 KL 1085
++
Sbjct: 107 EV 108
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 1009 LRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV 1068
LR + P D I++D MPV++G +R D +P+ L+A + +
Sbjct: 44 LRSATENRP-DAIVLDINMPVLDGVSVVTALRA----MDNDVPVCVLSARSSVDDRVAGL 98
Query: 1069 DAGMDFHLTKPLQKDKLLDVVKSI 1092
+AG D +L KP +L+ VK++
Sbjct: 99 EAGADDYLVKPFVLAELVARVKAL 122
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex With
Chey6 From R. Sphaeroides
Length = 145
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 22/120 (18%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEV---CRNGKEAFDHVCKILSDLRKEGKALP-YDYI 1021
+++ DDA ++++ A K F+V NG+EA D + A P D I
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLA-----------AQPNVDLI 64
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGV--ASKIVDAGMDFHLTKP 1079
++D EMPVM+G E R + I L++ A++G A++ + G D + KP
Sbjct: 65 LLDIEMPVMDGMEFLR-----HAKLKTRAKICMLSSVAVSGSPHAARARELGADGVVAKP 119
>pdb|3R31|A Chain A, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3R31|B Chain B, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Agrobacterium Tumefaciens
Length = 517
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 936 SISSHCSSLQQVAAQSDG--KCSEKPLNGKKFLVVEDDA-IVLKVTSAVLGKLGAKFEVC 992
S++ + ++VAA + G K L GK ++V DDA I V A+LG + +VC
Sbjct: 233 SLTGSVPTGRKVAAAAAGHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVC 292
Query: 993 RNGKEAF---DHVCKILSDLRKEGKAL----PYDY 1020
NG F + L +L++ +A+ P DY
Sbjct: 293 SNGTRVFVQKKAKARFLENLKRRTEAMILGDPLDY 327
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative Luxo
Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
I++D ++P M+G + I Q D+ +I TAH +A ++ G + L KP+
Sbjct: 52 IILDLKLPDMSGEDVLDWIN----QNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPI 107
Query: 1081 QKDKL 1085
D+L
Sbjct: 108 NADRL 112
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 28/136 (20%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGA-----KFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
K VV+DD +LK S L +LG E N +EAF HV
Sbjct: 4 KIAVVDDDKNILKKVSEKLQQLGRVKTFLTGEDFLNDEEAF-HV---------------- 46
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
+++D +P +G+E R I++ + +I LT + K +AG D ++TK
Sbjct: 47 --VVLDVXLPDYSGYEICRXIKETRPE----TWVILLTLLSDDESVLKGFEAGADDYVTK 100
Query: 1079 PLQKDKLLDVVKSIDE 1094
P + LL VK E
Sbjct: 101 PFNPEILLARVKRFLE 116
>pdb|3KYI|B Chain B, Crystal Structure Of The Phosphorylated P1 Domain Of Chea3
In Complex With Chey6 From R. Sphaeroides
Length = 145
Score = 33.9 bits (76), Expect = 0.47, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEV---CRNGKEAFDHVCKILSDLRKEGKALP-YDYI 1021
+++ DDA ++++ A K F+V NG+EA D + A P D I
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLA-----------AQPNVDLI 64
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
+++ EMPVM+G E +R + + I ++A A + + A++ + G D + KP
Sbjct: 65 LLNIEMPVMDGME---FLRHAKLKTRAKICMLASVAVSGSPHAARARELGADGVVAKP 119
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 967 VVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026
VV+DD+ + V L G NG E +L+ L + D ++ D
Sbjct: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGNE-------VLAALASKTP----DVLLSDIR 56
Query: 1027 MPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
MP M+G + I++ +P+I +TAH+ A G +L KP D+ +
Sbjct: 57 MPGMDGLALLKQIKQRHPM----LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAV 112
Query: 1087 DVVK 1090
+V+
Sbjct: 113 ALVE 116
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of Beryllofluoride-
Activated Ntrc Receiver Domain
Length = 124
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 967 VVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026
VV+DD+ + V L G NG E +L+ L + D ++ D
Sbjct: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGNE-------VLAALASKTP----DVLLSDIR 56
Query: 1027 MPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
MP M+G + I++ +P+I +TAH+ A G +L KP D+ +
Sbjct: 57 MPGMDGLALLKQIKQRHPM----LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAV 112
Query: 1087 DVVK 1090
+V+
Sbjct: 113 ALVE 116
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV+D + + ++ +L +LG N +EA D V L+ L+ G Y +++
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN-----NVEEAEDGV-DALNKLQAGG----YGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
MP M+G E + IR + +P++ + A A AG + KP
Sbjct: 56 XWNMPNMDGLELLKTIRADGAM--SALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of Ntrc
Length = 124
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 967 VVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026
VV+DD+ + V L G NG E +L+ L + D ++ D
Sbjct: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGNE-------VLAALASKTP----DVLLSDIR 56
Query: 1027 MPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
MP M+G + I++ +P+I +TAH+ A G +L KP D+ +
Sbjct: 57 MPGMDGLALLKQIKQRHPM----LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAV 112
Query: 1087 DVVK 1090
+V+
Sbjct: 113 ALVE 116
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 33.5 bits (75), Expect = 0.59, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
KFLVV + +L +LG F + ++ D + K+ +A Y +++
Sbjct: 6 KFLVVGNGGTGKSTVRNLLKELG--FNNVEDAEDGVDALNKL--------QAGGYGFVIS 55
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP M+G E + IR + +P++ +TA A AG ++ KP
Sbjct: 56 DWNMPNMDGLELLKTIRADGAM--SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 1084 KLLDVVKSIDETM 1096
L + + I E +
Sbjct: 114 TLEEKLNKIFEKL 126
>pdb|1K68|A Chain A, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
pdb|1K68|B Chain B, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
Length = 140
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVC--RNGKEAFDHVCKILSDLRKEGK---ALP 1017
KK +VED+ +++ L EV R+G EA + LR+EG+ A
Sbjct: 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAY-------LRQEGEYANASR 55
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
D I++ +P +G E I+ + IP++ L+ D ++ ++T
Sbjct: 56 PDLILLXLNLPKKDGREVLAEIKSDPTLK--RIPVVVLSTSINEDDIFHSYDLHVNCYIT 113
Query: 1078 KPLQKDKLLDVVKSIDE 1094
K +L +VK I+E
Sbjct: 114 KSANLSQLFQIVKGIEE 130
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
LV+EDD + + L G K E GKEA+ K+LS+ ++ +++D
Sbjct: 4 LVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAY----KLLSEKH-------FNVVLLDL 52
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+P +NG E + I++ + +V I +T H A + + G LTKP +++
Sbjct: 53 LLPDVNGLEILKWIKERSPETEV----IVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEI 108
Query: 1086 -LDVVKSID 1093
L + K+I+
Sbjct: 109 ELTINKAIE 117
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
Length = 121
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
D I++D +P +G E R +R+ +P+I L+A + +DAG D +L+K
Sbjct: 47 DLIILDLGLPDGDGIEFIRDLRQWSA-----VPVIVLSARSEESDKIAALDAGADDYLSK 101
Query: 1079 PL 1080
P
Sbjct: 102 PF 103
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LVV+D+A ++++ S L G + NG +A D +E + D +++
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA--------RETRP---DAVIL 73
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D P +G+ R +R + + P + LTA + G D ++TKP +
Sbjct: 74 DVXXPGXDGFGVLRRLRAD----GIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLE 129
Query: 1084 KLLDVVKSI 1092
+++ ++ I
Sbjct: 130 EVVARLRVI 138
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 786 GHHDVALDIKDDYDNVS--PHSKKASSKCLSSFTLVVIDA 823
G H A ++ DY VS P KK KC S+ TL++ DA
Sbjct: 204 GEHFSAFIVEKDYAGVSTSPEEKKXGIKCSSTRTLILEDA 243
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The Inactive
State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The Inactive
State
Length = 368
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K+ LVV+D+ + SA+L + G + + +EA K+ K L + I+
Sbjct: 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREA-----------EKKIKELFFPVIV 49
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+D P +G I KE V +I +T H A K + G L KP
Sbjct: 50 LDVWXPDGDGVNFIDFI-KENSPDSV---VIVITGHGSVDTAVKAIKKGAYEFLEKPFSV 105
Query: 1083 DKLLDVVKSIDETMEKQ 1099
++ L +K E K+
Sbjct: 106 ERFLLTIKHAFEEYSKK 122
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao Respiratory
System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao Respiratory
System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao Respiratory
System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao Respiratory
System Response Regulator Torr
Length = 122
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
++VED+ + + + G V +G + LR+ + D I++D
Sbjct: 6 VIVEDEPVTQARLQSYFTQEGYTVSVTASG-----------AGLREIXQNQSVDLILLDI 54
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+P NG TR +R E+ V I ++ + + + ++ G D ++TKPL+ +L
Sbjct: 55 NLPDENGLXLTRALR---ERSTVGIILVTGRSDRIDRIVG--LEXGADDYVTKPLELREL 109
Query: 1086 LDVVKSI 1092
+ VK++
Sbjct: 110 VVRVKNL 116
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator Spo0a
Length = 130
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIP-IIALTAHAMAGVASKIVDAGMDFHLT 1077
D +++D MP ++G IR E H P +I LTA V K V+ G + +
Sbjct: 50 DILLLDIIMPHLDGLAVLERIRAGFE----HQPNVIMLTAFGQEDVTKKAVELGASYFIL 105
Query: 1078 KPLQKDKLLDVVKSI 1092
KP + L ++ +
Sbjct: 106 KPFDMENLAHHIRQV 120
>pdb|4AUN|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|E Chain E, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|F Chain F, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|G Chain G, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|H Chain H, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 370 EMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLV------ELCHEDA 423
+ FL A+ +++ + E K N L + SHDV +AA IGL H +
Sbjct: 495 QQFLVNAMRFEISLVKSEEVKK-NVLTQLNRVSHDVAVRVAAAIGLGAPDADDTYYHNNK 553
Query: 424 NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKI-EAGKMELVEEEFNL-----AQLLEEV 477
G + + G + T +GIL + E S + +A ++ E+ L A+ L E
Sbjct: 554 TAGVSIVGS-GPLPTIKTLRVGILATTSESSALDQAAQLRTRLEKDGLVVTVVAETLREG 612
Query: 478 VDMYYHVGIKKGVDVVL 494
VD Y G D V+
Sbjct: 613 VDQTYSTADATGFDGVV 629
>pdb|4AUM|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 370 EMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLV------ELCHEDA 423
+ FL A+ +++ + E K N L + SHDV +AA IGL H +
Sbjct: 495 QQFLVNAMRFEISLVKSEEVKK-NVLTQLNRVSHDVAVRVAAAIGLGAPDADDTYYHNNK 553
Query: 424 NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKI-EAGKMELVEEEFNL-----AQLLEEV 477
G + + G + T +GIL + E S + +A ++ E+ L A+ L E
Sbjct: 554 TAGVSIVGS-GPLPTIKTLRVGILATTSESSALDQAAQLRTRLEKDGLVVTVVAETLREG 612
Query: 478 VDMYYHVGIKKGVDVVL 494
VD Y G D V+
Sbjct: 613 VDQTYSTADATGFDGVV 629
>pdb|4AUL|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 370 EMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLV------ELCHEDA 423
+ FL A+ +++ + E K N L + SHDV +AA IGL H +
Sbjct: 495 QQFLVNAMRFEISLVKSEEVKK-NVLTQLNRVSHDVAVRVAAAIGLGAPDADDTYYHNNK 553
Query: 424 NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKI-EAGKMELVEEEFNL-----AQLLEEV 477
G + + G + T +GIL + E S + +A ++ E+ L A+ L E
Sbjct: 554 TAGVSIVGS-GPLPTIKTLRVGILATTSESSALDQAAQLRTRLEKDGLVVTVVAETLREG 612
Query: 478 VDMYYHVGIKKGVDVVL 494
VD Y G D V+
Sbjct: 613 VDQTYSTADATGFDGVV 629
>pdb|4AUE|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 717
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 370 EMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLV------ELCHEDA 423
+ FL A+ +++ + E K N L + SHDV +AA IGL H +
Sbjct: 493 QQFLVNAMRFEISLVKSEEVKK-NVLTQLNRVSHDVAVRVAAAIGLGAPDADDTYYHNNK 551
Query: 424 NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKI-EAGKMELVEEEFNL-----AQLLEEV 477
G + + G + T +GIL + E S + +A ++ E+ L A+ L E
Sbjct: 552 TAGVSIVGS-GPLPTIKTLRVGILATTSESSALDQAAQLRTRLEKDGLVVTVVAETLREG 610
Query: 478 VDMYYHVGIKKGVDVVL 494
VD Y G D V+
Sbjct: 611 VDQTYSTADATGFDGVV 627
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
+ K+D + ++ C ++F +N +GF D++ L + R E +++D K
Sbjct: 84 RQMKEDAKGKSEEELANCF-RIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSD 142
Query: 603 KDKQNSI-FEEFVQVKE 618
K+ I F+EF+++ E
Sbjct: 143 KNNDGRIDFDEFLKMME 159
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 15/124 (12%)
Query: 967 VVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026
VV+DD+ + V L G NG E +L+ L + D ++
Sbjct: 8 VVDDDSSIRWVLERALAGAGLTCTTFENGNE-------VLAALASKTP----DVLLSXIR 56
Query: 1027 MPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLL 1086
MP M+G + I++ +P+I +TAH+ A G +L KP D+ +
Sbjct: 57 MPGMDGLALLKQIKQRHPM----LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAV 112
Query: 1087 DVVK 1090
+V+
Sbjct: 113 ALVE 116
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From Desulfuromonas
Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From Desulfuromonas
Acetoxidans
Length = 147
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 13/129 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ ++V+ L + + L + G C N EA K L I+
Sbjct: 10 RIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHL-----------IIT 58
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
+ MP ++G + ++K + IP+IAL+ A A ++++D G + KP+
Sbjct: 59 EANMPKISGMDLFNSLKKNPQT--ASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAI 116
Query: 1084 KLLDVVKSI 1092
+L +K +
Sbjct: 117 RLSARIKRV 125
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 30.4 bits (67), Expect = 6.1, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASK-IVDAGMDFHLTKP 1079
++ D MP M+G R I D +P+I +T H +A + I D DF + KP
Sbjct: 51 VISDIRMPGMDGLALFRKILA----LDPDLPMILVTGHGDIPMAVQAIQDGAYDF-IAKP 105
Query: 1080 LQKDKLLDVVKSIDE 1094
D+L+ + +E
Sbjct: 106 FAADRLVQSARRAEE 120
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 30.4 bits (67), Expect = 6.3, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
+ K+D + ++ C ++F +N +GF D++ L + R E +++D K
Sbjct: 81 RQMKEDAKGKSEEELANCF-RIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSD 139
Query: 603 KDKQNSI-FEEFVQVKE 618
K+ I F+EF+++ E
Sbjct: 140 KNNDGRIDFDEFLKMME 156
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 30.4 bits (67), Expect = 6.4, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
+ K+D + ++ C ++F +N +GF D++ L + R E +++D K
Sbjct: 84 RQMKEDAKGKSEEELANCF-RIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSD 142
Query: 603 KDKQNSI-FEEFVQVKE 618
K+ I F+EF+++ E
Sbjct: 143 KNNDGRIDFDEFLKMME 159
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCK 848
D++ DI D + ++ + + S+ L+ F A+ G V+E ++ NF +V K
Sbjct: 134 DLSKDIHDWNNRMNENERFFISRVLAFFA-----ASDGIVNE--NLVENFSTEVQIPEAK 186
Query: 849 VVWIDNSVIRNAHSREYRLLPICDHVISRPFHGSRLIEVLKLLPEC 894
+ +I N HS Y LL D I P L + +PE
Sbjct: 187 SFYGFQIMIENIHSETYSLL--IDTYIKDPKESEFLFNAIHTIPEI 230
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 44/141 (31%)
Query: 506 HVRGDRVKLKQILCNLVSNSMKFTSE-GHISVRAAVKKKSFKQDIIASNRNVISKCLSKL 564
+V D+ K+ Q+L N++SN++K++ E GH++
Sbjct: 36 YVEIDQDKITQVLDNIISNALKYSPEGGHVTF---------------------------- 67
Query: 565 FFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624
S++ N V D G GIPK +F+ F +V +
Sbjct: 68 ---------------SIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKL 112
Query: 625 EXXXXXXXIVQSMVHLMKGEI 645
I + MV G+I
Sbjct: 113 GGTGLGLAIAKEMVQAHGGDI 133
>pdb|1FJ1|A Chain A, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
pdb|1FJ1|C Chain C, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
Length = 213
Score = 30.0 bits (66), Expect = 7.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 291 GNPTKFNMKIMGKKYIFYCSTLQIAGVQSVYVLAYDS 327
GNP++F+ G+ Y F S L+ + Y L YD+
Sbjct: 57 GNPSRFSGSGSGRDYSFSISNLEAEDIAIYYCLQYDN 93
>pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
Length = 399
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCK 848
D++ DI D + ++ + + S+ L+ F A+ G V+E ++ NF +V K
Sbjct: 114 DLSKDIHDWNNRMNENERFFISRVLAFFA-----ASDGIVNE--NLVENFSTEVQIPEAK 166
Query: 849 VVWIDNSVIRNAHSREYRLLPICDHVISRPFHGSRLIEVLKLLPEC 894
+ +I N HS Y LL D I P L + +PE
Sbjct: 167 SFYGFQIMIENIHSETYSLL--IDTYIKDPKESEFLFNAIHTIPEI 210
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIP 602
+ K+D + ++ C ++F +N +GF D++ L + R E +++D K
Sbjct: 84 RQMKEDAKGKSEEELADCF-RIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSD 142
Query: 603 KDKQNSI-FEEFVQVKE 618
K+ I F+EF+++ E
Sbjct: 143 KNNDGRIDFDEFLKMME 159
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded (BetaALPHA)-Barrel
From Fragments Of Different Folds
Length = 234
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 982 LGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041
+GK+ + NG+EA + K L D + MD MP MNG +A + I K
Sbjct: 1 MGKIVLIVDDATNGREAVEKY-----------KELKPDIVTMDITMPEMNGIDAIKEIMK 49
Query: 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAG 1071
D + II +A + + + AG
Sbjct: 50 ----IDPNAKIIVCSAMGQQAMVIEAIKAG 75
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 29.6 bits (65), Expect = 9.4, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 1021 IMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
++ D MP M+G E R + ++IP I +T H +A + + AG + KP
Sbjct: 51 LVTDLRMPDMSGVELLRNL----GDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPF 106
Query: 1081 QKDKLLDVVKSIDETM 1096
+ +++ ++ E +
Sbjct: 107 EDTVIIEAIERASEHL 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,689,568
Number of Sequences: 62578
Number of extensions: 1172138
Number of successful extensions: 2832
Number of sequences better than 100.0: 167
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 144
Number of HSP's that attempted gapping in prelim test: 2712
Number of HSP's gapped (non-prelim): 176
length of query: 1099
length of database: 14,973,337
effective HSP length: 109
effective length of query: 990
effective length of database: 8,152,335
effective search space: 8070811650
effective search space used: 8070811650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)