BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001330
(1099 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22267|CKI1_ARATH Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1
Length = 1122
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/1151 (37%), Positives = 633/1151 (54%), Gaps = 114/1151 (9%)
Query: 12 PKIVLRPLCFLIFLGFCAFGTLKIWLMTIKTAHE--IKQEASGV--LNNSF-SEIETTAR 66
P +V L FL+ + C IW+ +T E +K+ AS L S SEIE +
Sbjct: 13 PIVVFCVLAFLVVVFEC------IWISNWRTTTENLVKEVASFTEDLRTSLVSEIENIGK 66
Query: 67 LLLP-LNSSAFNLARSLSSYLNGTELSFDTIQTKVAPTLFLALSTIPHLSLVSYLGLDGL 125
N S LAR + SY+ + F IQT++AP LF+A STI +S VSY+ DGL
Sbjct: 67 FTYAKTNLSTIGLARVIDSYITNNDTGFTEIQTQIAPLLFVAYSTILQVSQVSYISRDGL 126
Query: 126 SFSYFNDGDQTLAVYSNSSFAAN-----WYTQPVNRDTGMLYGNAIASIPIVSANASWFQ 180
FSY + + ++AV++NSS ++ WYTQ V++ TG L GN+ S + + WFQ
Sbjct: 127 MFSYIAESNTSVAVFANSSSNSSRGDYTWYTQTVDQLTGRLNGNSTKSQSLDVTHTDWFQ 186
Query: 181 EVINSTNGYSSLVTG--LNKEEGSIFLHTFA--MDGTGFISLGFPAKVVIDLFAALDFHG 236
+N Y++ G L E+ + + G +SLGFP K + ++ +L+ HG
Sbjct: 187 AA--QSNNYTTAFVGTSLGGEDNETLIQSVVSLYSKKGLVSLGFPVKTLTEVLNSLNLHG 244
Query: 237 GDLHLAAADGQVIIQTKLQNTEMVIYNSTLLLQKLNDDDSPEGSIANHSCVSDKGNPTKF 296
+L++ DG V+++ N I N ++ + E + C+ + + + +
Sbjct: 245 EELYMWTKDGTVLVREGSLNDSFFISNGSICFGR-------ESNSLWSQCIPENCSSSGY 297
Query: 297 NMKIMGKKYIFYCSTLQIAGVQSVYVLAYDSNGLGSLVSRN-NKLSLMLLVLMFIAGVIS 355
++I +Y +CS ++++GV Y L + + G + + K L+V+M G
Sbjct: 298 EVEIKRLRYQAFCSVIEVSGVPLRYTLMFPNKGGATRIKHQAEKAKYQLIVVMIFLGFGW 357
Query: 356 LGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGL 415
F+ + +A +REM + A LI QM AT+QAERKSMNK+ A A ASHD+R +LA + GL
Sbjct: 358 PVWFVWFMMQATRREMHMRATLINQMEATQQAERKSMNKSQAFANASHDIRGALAGMKGL 417
Query: 416 VELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLE 475
+++C + PG+D+ L + C+KDL+ +LNSV++MSKIE+GKM+LVEE+FNL++LLE
Sbjct: 418 IDICRDGVKPGSDVDTTLNQVNVCAKDLVALLNSVLDMSKIESGKMQLVEEDFNLSKLLE 477
Query: 476 EVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHIS 535
+V+D Y+ V +KKGVDVVLDP DGSV +VRGD +LKQIL NLVSN++KFT +GHI+
Sbjct: 478 DVIDFYHPVAMKKGVDVVLDPHDGSVFKFSNVRGDSGRLKQILNNLVSNAVKFTVDGHIA 537
Query: 536 VRA-AVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD--DLDALHSVERNPNLLQFEF 592
VRA A + S ++AS +SK + +F +NKE + + +S+ N N ++F F
Sbjct: 538 VRAWAQRPGSNSSVVLASYPKGVSKFVKSMFCKNKEESSTYETEISNSIRNNANTMEFVF 597
Query: 593 EVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEP 652
EVDDTGKGIP + + S+FE +VQV+ETA GHQ G GLGLGIVQS+V LM GEI I DK
Sbjct: 598 EVDDTGKGIPMEMRKSVFENYVQVRETAQGHQ-GTGLGLGIVQSLVRLMGGEIRITDKAM 656
Query: 653 GERGVCFRFNVLLTAVCERERPDTDEEDPRTH----NDW---PQTG-------------- 691
GE+G CF+FNVLLT + E P + R D+ P G
Sbjct: 657 GEKGTCFQFNVLLTTL---ESPPVSDMKVRQEIEAGGDYVSTPNLGLTINTSLGGSMNIR 713
Query: 692 -LHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELR 750
L F + S+ K EGS+++L + EERRRV ++YI+N L IKVT+V++ ++L L
Sbjct: 714 NLSPRFNNCLSSSPKQEGSRVVLLLKNEERRRVTEKYIKN-LGIKVTVVEKWEHLSYALE 772
Query: 751 KVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDDYDNVSPHSKKASS 810
++ SS+G AE ++S SS + + +D D + K S
Sbjct: 773 RLFGFSPQSSMGRAE---------CSLSCPSSRELPF--IGMDGIDSRSQLP----KRRS 817
Query: 811 KCLSSFTLVVIDATAGSVSELVKILANFKRDVP-SLSCKVVWIDNSVIRNAHSREYRLLP 869
S+ L+VIDA G EL I+ F+R +P +SCKVVW++ S R +
Sbjct: 818 ISFSAVVLLVIDAKTGPFFELCDIVKQFRRGLPHGISCKVVWLNESSTRVSER------- 870
Query: 870 ICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSF 929
D SRP HGSRL+EVLK+LPE G + P S + +P +K++
Sbjct: 871 -GDISCSRPLHGSRLMEVLKMLPEFGGTVLKEPPTELQRESLLRHSFVAERSPKHKVQEE 929
Query: 930 G------------------AEAGASISSHCSSLQQVAAQSDGKCSEKP-----LNGKKFL 966
G +E+ + S + + + D + + KP L GK+ L
Sbjct: 930 GPSSMFNKKLGKRIMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVL 989
Query: 967 VVEDDAIVLKVTSAVLGKLG-AKFEVCRNGKEAFDHVCKILSDLRKEGKA--LPYDYIMM 1023
VV+D+ I KV + L K+G ++ E C +GKEA V + L+ ++G LP+DYI M
Sbjct: 990 VVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFM 1049
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAG-VASKIVDAGMDFHLTKPLQK 1082
DC+MP M+G+EATR IRK E+ Y V PIIA++ H A + + AGMD L K L
Sbjct: 1050 DCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSL-- 1107
Query: 1083 DKLLDVVKSID 1093
++L +V++ I+
Sbjct: 1108 NQLANVIREIE 1118
>sp|Q9SXL4|AHK1_ARATH Histidine kinase 1 OS=Arabidopsis thaliana GN=AHK1 PE=1 SV=2
Length = 1207
Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 271/1082 (25%), Positives = 470/1082 (43%), Gaps = 191/1082 (17%)
Query: 112 PHLSLVSYLGLDGLSFSYFNDGDQTLAVYSNSSFAAN----WYTQPVNRDTGMLYGNAIA 167
P S Y+ D ++S G + ++ ++N S N WY Q ++ TG G +
Sbjct: 204 PASSSTFYIFSDLKNYSISGTGPEDVSGWNNKSIHGNMSAIWYQQQLDPVTGENLGKPLK 263
Query: 168 SIPIVSANASWFQEVINSTNGYSSLVTG-LNKEEGSIFLHTFAMDGTGFISLGFPAKVVI 226
P N + +V + + V+ ++ S L F +++ V
Sbjct: 264 IPPDDLINIAGISQVPDGEASWHVTVSKYMDSPLLSAALPVFDASNKSIVAV---VGVTT 320
Query: 227 DLFAA-------LDFHGGDLHLAAADGQVIIQTKLQNTEMVIYNSTLLLQKLNDDDSPEG 279
L++ ++ HGG ++L + +G ++ + ++ N++ Q + DS E
Sbjct: 321 ALYSVGQLMRDLVEVHGGHIYLTSQEGYLLATS---TDGPLLKNTSNGPQLMKATDSEEW 377
Query: 280 SIANHSCVSDKGNPTKF-------NMKIMGKKYI---FYCS--TLQIAGVQSVYVLAYDS 327
I + + +K +K N+K+ ++Y FY + L I GV V+
Sbjct: 378 VIKSGAQWLEKTYGSKRPHVVHAENVKLGDQRYYIDSFYLNLKRLPIVGV----VIIPRK 433
Query: 328 NGLGSLVSRNNKLSLMLL---VLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNAT 384
+G + R K ++L+ V +F G + I+++ +EM L A LI+Q++A
Sbjct: 434 FIMGKVDERAFKTLIILISASVCIFFIGCVC----ILILTNGVSKEMKLRAELIRQLDAR 489
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
+AE S K+ LA SH++R +AA+IGL+++ D + + IR CS LL
Sbjct: 490 RRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLSNEQYATVTQIRKCSTALL 549
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGS 504
+LN+++++SK+E+GK+ L E EF+L + LE +VDM+ I V+ VLD D
Sbjct: 550 RLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDM---P 606
Query: 505 CHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQD---IIASNRNVISKCL 561
VRGD +L QI NL+SNS+KFT+ GHI +R + + D + R +
Sbjct: 607 ALVRGDSARLVQIFANLISNSIKFTTTGHIILRGWCENINSLHDEMSVSVDRRKPWAPMK 666
Query: 562 SK-LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
+K + RN L +N N + FEVDDTG GI K +S+FE F Q +
Sbjct: 667 TKQVQHRNH--------LQKSCKNANKMVLWFEVDDTGCGIDPSKWDSVFESFEQADPST 718
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
G GLGL IV+++V+ M GEI + K G R ++L+ PDT +++
Sbjct: 719 TRTHGGTGLGLCIVRNLVNKMGGEIKVVQK--NGLGTLMRLYLILST------PDTVDQN 770
Query: 681 PRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVK 740
+ F+ + G ++L + G R + +++ K I
Sbjct: 771 -----------IQPDFSKY--------GLVVMLSMYGSTARMITSKWLR-----KHGIAT 806
Query: 741 QEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDDYDN 800
E + EL ++ R D L + +S H+++ ++ + N
Sbjct: 807 VEASDWNELTQIIR------------------DLLETGSRDNSFDSQHNISDPLRAELSN 848
Query: 801 VSPHSKKASSKCLSSFTLV----VIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSV 856
+ F +V V+D T E + L F S K W+
Sbjct: 849 IVEIKNPV-------FVIVVDIGVLDLTTNIWKEQLNYLDRF-----SNKAKFAWLLKHD 896
Query: 857 IRNAHSREYRLLPICDHV--ISRPFHGSRLIEVLKLL----------------------P 892
N E R HV +++P + +++I++L+ +
Sbjct: 897 TSNTVKTELRR---KGHVMMVNKPLYKAKMIQILEAVIKNRKRGLCNDLRNRGNGSDESH 953
Query: 893 ECKGASQRNFPKLKMEASSQ-----ELQHCTDPNPLNK--LKSFGAEAGAS--ISSHCSS 943
+C F + SS+ ++ P+ L+ LK++ +A S S+ S
Sbjct: 954 DCLEIDPTQFDTCSSDDSSETSGEKQVDKSVKPSTLHSPVLKNYLIDATTSNDDSTSASM 1013
Query: 944 LQQVAAQSDGK---CSEKPLNGK--------KFLVVEDDAIVLKVTSAVLGKLGAKFEVC 992
Q+ + D K S L+GK + L+ ED ++ +V + +L K+GA
Sbjct: 1014 TQKNPEEEDWKDRLYSGIALDGKNQKSLEGIRILLAEDTPVLQRVATIMLEKMGATVTAV 1073
Query: 993 RNGKEAFDHV----------------------CKILSDLRKEGKALPYDYIMMDCEMPVM 1030
+G++A D + K+ + + PYD I+MDC+MP M
Sbjct: 1074 WDGQQAVDSLNYKSINAQAPTEEHKSFEEETANKVTTRETSLRNSSPYDLILMDCQMPKM 1133
Query: 1031 NGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090
+G+EAT+ IR+ E ++HIPI+ALTAHAM+ +K ++ GMD +LTKP+ + ++ +
Sbjct: 1134 DGYEATKAIRRAEIGTELHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTIL 1193
Query: 1091 SI 1092
S+
Sbjct: 1194 SL 1195
>sp|O14002|MAK2_SCHPO Peroxide stress-activated histidine kinase mak2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mak2 PE=3 SV=1
Length = 2310
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 168/731 (22%), Positives = 291/731 (39%), Gaps = 164/731 (22%)
Query: 367 AKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPG 426
AK+ + +C + + A E A KT LA SH++R ++ G++ L D
Sbjct: 1727 AKKWIVVCIDINDEKEAREAAMHAVNLKTNFLANMSHELRTPFSSFYGMLSLL-SDTKLN 1785
Query: 427 TDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEE-FNLAQLLEEVVDMYYHVG 485
+ + + + L+ I++ ++ S++++GKM+L ++ F++ + + + +++ Y
Sbjct: 1786 EEQYDIVSTAKQSCTSLVQIIDDLLNFSELKSGKMKLEPDKVFDVEENIADCIELVYPSL 1845
Query: 486 IKKGVDVVLD--PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKK 543
K V + D P ++L GD KL+Q++ NL+ NS+KFT+EGHI +R
Sbjct: 1846 SSKPVQISYDIYPNVPALLA-----GDSAKLRQVITNLLGNSVKFTTEGHILLR------ 1894
Query: 544 SFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPK 603
C++ +D + N + FE++DTG G+ +
Sbjct: 1895 ----------------CMA------------ID--EEINAEENQCKLRFEIEDTGIGLKE 1924
Query: 604 DKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
++ +F F QV + G GLGL I + +M G+I + GE G F F+V
Sbjct: 1925 EQLKLLFNPFTQVDGSTTRIYGGSGLGLSICLQICKIMDGDIGVQSVY-GE-GSTFWFHV 1982
Query: 664 LLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRV 723
L V + EE H+ FA+ R+
Sbjct: 1983 QLRNVTSKLSQKHFEES------------HERFANI---------------------RQS 2009
Query: 724 LKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSS 783
LK N K+ +VK + S+ SL A +
Sbjct: 2010 LK-------NAKILVVK-----------------------SFTTSRSIFRSLFSLAVVDT 2039
Query: 784 DTGHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELV-KILANFKRDV 842
T + D+ + D D P+ + I+A +G +++ +IL+N K +
Sbjct: 2040 TTIYSDIEQQLIDSLDKRQPYD------------FLCIEAASGQTEQIITQILSNQKLNK 2087
Query: 843 PSLSCKVVWIDNSVIRNAHSREYRLLPICDHVISRPFHGSRLIEVLKLLPECKGASQRNF 902
L + I + +R+ + + SR F I + KLL +NF
Sbjct: 2088 VLLIVLLPSIQRTKVRSDGD---PFITSLNKNQSRIFCFREPIRISKLL--------QNF 2136
Query: 903 PKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNG 962
P L L + P L + F A S ++V EK +
Sbjct: 2137 PAL--------LSKWSTPTKLVEPSQFRA-----------SPRKVDQAVVLSSEEKEILQ 2177
Query: 963 KKF-LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
KK+ L+ ED+ I K+ + L LG + +G E L + + + Y I
Sbjct: 2178 KKYALIAEDNLIARKLLTKQLSNLGFQVHAAVDGVE--------LVKMYEAKQFGFYSVI 2229
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYD--VHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079
D MP+ +G EA IR E + + IP+IALTA + ++ GM+F+LTKP
Sbjct: 2230 FADYHMPIRDGAEAVMDIRAYERENNCSTPIPVIALTADIQKSAKQRCLEVGMNFYLTKP 2289
Query: 1080 LQKDKLLDVVK 1090
+ +L++ V+
Sbjct: 2290 FTQKQLVNAVR 2300
>sp|Q7MD16|LUXQ_VIBVY Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio vulnificus
(strain YJ016) GN=luxQ PE=3 SV=1
Length = 857
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 139/294 (47%), Gaps = 60/294 (20%)
Query: 379 KQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
KQ N A +AE+ + + LAK SH++R L I+G+ +L N +L + + ++
Sbjct: 468 KQSNLARREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKRSVNDAENLKQ-VDVLC 526
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-- 495
+ LL +LN +++ SKIE GK + + +FN L + ++Y + +KGV +
Sbjct: 527 NSGEHLLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKGVSFEIHNQ 586
Query: 496 -PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
P D C + D+V+L QI+ NL+SN++KFT G I V SFK + A +
Sbjct: 587 IPLD------CQLHTDQVRLNQIMFNLISNAVKFTPAGRIEV-------SFKLEQFARSE 633
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
HS+ +V DTG GI + K SIFE FV
Sbjct: 634 ------------------------HSI--------LSIQVSDTGIGIDESKLESIFEPFV 661
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE----------PGERGVC 658
Q + G GLGL IV+++V +++GEI++ + P E+G C
Sbjct: 662 QADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSELCKGSTFYLSIPVEKGEC 715
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 953 GKCSEK--PLN---------GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDH 1001
G+C E+ P N G K L+VED+ + A K E ++G +A +
Sbjct: 713 GECEEQKTPTNPKPEQLFGQGLKVLLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEK 772
Query: 1002 VCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMA 1061
+ K +D I+MD ++P M G EATR IR E + PI A TA A
Sbjct: 773 L-----------KEHAFDLILMDNQLPKMGGIEATREIR---ETLKLGTPIYACTADAQE 818
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLD 1087
+ + AG + + KP+++ +L D
Sbjct: 819 STKQEFLSAGANRVIVKPIKEQELHD 844
>sp|Q8D5Z6|LUXQ_VIBVU Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio vulnificus
(strain CMCP6) GN=luxQ PE=3 SV=1
Length = 857
Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 139/294 (47%), Gaps = 60/294 (20%)
Query: 379 KQMN-ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
KQ N A +AE+ + + LAK SH++R L I+G+ +L N +L + + ++
Sbjct: 468 KQSNLARREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKRSVNDAENLKQ-VDVLC 526
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-- 495
+ LL +LN +++ SKIE GK + + +FN L + ++Y + +KGV +
Sbjct: 527 NSGEHLLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKGVSFEIHNQ 586
Query: 496 -PCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNR 554
P D C + D+V+L QI+ NL+SN++KFT G I V SFK + A +
Sbjct: 587 IPLD------CQLHTDQVRLNQIMFNLISNAVKFTPAGRIEV-------SFKLEKFARSE 633
Query: 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614
HS+ +V DTG GI + K SIFE FV
Sbjct: 634 ------------------------HSI--------LSIQVSDTGIGIDESKLESIFEPFV 661
Query: 615 QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE----------PGERGVC 658
Q + G GLGL IV+++V +++GEI++ + P E+G C
Sbjct: 662 QADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSELCKGSTFYLSIPVEKGEC 715
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 953 GKCSEK--PLN---------GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDH 1001
G+C E+ P N G K L+VED+ + A K E ++G +A +
Sbjct: 713 GECEEQKTPTNPKPEQLFGQGLKVLLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEK 772
Query: 1002 VCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMA 1061
+ K +D I+MD ++P M G EATR IR E + PI A TA A
Sbjct: 773 L-----------KEHAFDLILMDNQLPKMGGIEATREIR---ETLKLGTPIYACTADAQE 818
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLD 1087
+ + AG + + KP+++ +L D
Sbjct: 819 STKQEFLSAGANRVIVKPIKEQELHD 844
>sp|Q9C5U1|AHK3_ARATH Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1
Length = 1036
Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 153/309 (49%), Gaps = 13/309 (4%)
Query: 378 IKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIR 437
+KQ+ ++AE + K+ LA SH++R + ++G++ + D + + +
Sbjct: 437 MKQLK--KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLM-DTELDVTQQDYVRTAQ 493
Query: 438 TCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPC 497
K L+ ++N V++ +KIE+GK+EL E F+L +L++V+ ++ +KGV++ +
Sbjct: 494 ASGKALVSLINEVLDQAKIESGKLELEEVRFDLRGILDDVLSLFSSKSQQKGVELAVYIS 553
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ---DIIASNR 554
D + GD + +QIL NL+ NS+KFT +GHI V + + F+ + +S
Sbjct: 554 DRV---PDMLIGDPGRFRQILTNLMGNSIKFTEKGHIFVTVHLVDELFESIDGETASSPE 610
Query: 555 NVISKCLSKLFFRNKEGFDDL--DALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612
+ +S R+ E F + S E +P + V+DTG GIP + Q+ IF
Sbjct: 611 STLSGLPVADRQRSWENFKAFSSNGHRSFEPSPPDINLIVSVEDTGVGIPVEAQSRIFTP 670
Query: 613 FVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERE 672
F+QV + G G+GL I + +V LMKGEI + + G F F + + +
Sbjct: 671 FMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFSSTP--KVGSTFTFTAVFSNGMQPA 728
Query: 673 RPDTDEEDP 681
D P
Sbjct: 729 ERKNDNNQP 737
Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 28/144 (19%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L G+K L+V+D+ + L+V + L K GA +G K +S L+ + +D
Sbjct: 887 LLGRKILIVDDNNVNLRVAAGALKKYGADVVCAESG-------IKAISLLKPPHE---FD 936
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHIPIIALTAHAMA 1061
MD +MP M+G+EATR IR EE+ + H+P++A+TA +
Sbjct: 937 ACFMDIQMPEMDGFEATRRIRDMEEEMNKRIKNGEALIVENGNKTSWHLPVLAMTADVIQ 996
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKL 1085
+ + GMD +++KP + ++L
Sbjct: 997 ATHEECLKCGMDGYVSKPFEAEQL 1020
>sp|Q54YZ9|DHKJ_DICDI Hybrid signal transduction histidine kinase J OS=Dictyostelium
discoideum GN=dhkJ PE=3 SV=2
Length = 2062
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 152/324 (46%), Gaps = 57/324 (17%)
Query: 350 IAGVISLGLFIILIAKAAKREMFLCAALIKQMN------------ATEQAERKSMNKTFA 397
IA ++ G F +I+ AK E+ L +I +M A E AE S K+
Sbjct: 1291 IAKAVTKGDFTRVISVDAKGEVNLLKLIINEMIHNLKETTLKNTLAKETAEAASRAKSDF 1350
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457
+A SH++R + IIG+ +L D + E L ++++ + LL I+N +++ SKIE
Sbjct: 1351 MANMSHEIRTPMNGIIGMTDLTL-DTELTAEQREYLSMVQSSAGSLLTIINDILDFSKIE 1409
Query: 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQI 517
AG++EL + EF+L L + + +K +++V CD + + GD +L+QI
Sbjct: 1410 AGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELV---CDIASDVPDSLIGDPGRLRQI 1466
Query: 518 LCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDA 577
+ NLV N++KFTS+G + + V+K +++
Sbjct: 1467 VNNLVGNAIKFTSQGEVDLVVKVEKSLSCGEVV--------------------------- 1499
Query: 578 LHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSM 637
+F V DTG GIPKDK + IFE F Q + G GLGL I +
Sbjct: 1500 ------------LKFSVIDTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRL 1547
Query: 638 VHLMKGEIAIADKEPGERGVCFRF 661
V LMKG++++ K +G F F
Sbjct: 1548 VELMKGKLSVVSKSG--KGSTFEF 1569
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 72/121 (59%), Gaps = 11/121 (9%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
L+ ED+A+ ++ +L K G + ++ NG +A S LRK +D I+MD
Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVAS-----SQLRK------FDLILMD 1779
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
+MP G+EAT IRK E + +H PIIA+TAHA+A K ++AGMD +++KP+ D+
Sbjct: 1780 VQMPHCGGFEATAQIRKREHEQGIHTPIIAMTAHALARDRVKCLEAGMDDYISKPINPDQ 1839
Query: 1085 L 1085
L
Sbjct: 1840 L 1840
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP 1017
+ LN L+V+D+ LKV +L + G EV N ++AF+ + K + P
Sbjct: 1584 EKLNDVHTLIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKATKTTK------P 1637
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVH--IPIIALTAHAMAGVASKIVDAGMDF- 1074
+++I +D ++ T LI E+ H II L + G D+ +F
Sbjct: 1638 FEFIFVDAQL-------GTSLIDMMVEKNMNHCKTKIIMLIS---GGGQRGYPDSSSNFI 1687
Query: 1075 --HLTKPLQKDKLLDVV 1089
+L+KP+ ++ D++
Sbjct: 1688 TGYLSKPVSPSEIFDIL 1704
>sp|Q87GU5|LUXQ_VIBPA Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=luxQ PE=3 SV=1
Length = 858
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 159/324 (49%), Gaps = 58/324 (17%)
Query: 350 IAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASL 409
I+G+I G I + +A K+ A +AE+ + + LAK SH++R +
Sbjct: 448 ISGIIVQGQDITTLIEAEKQSNL----------ARREAEKSAQARADFLAKMSHEIRTPI 497
Query: 410 AAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFN 469
I+G+ +L +D+ + + ++R + LL +LN +++ SKIE GK + + F+
Sbjct: 498 NGILGVAQLL-KDSVEAEEQKNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFS 556
Query: 470 LAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT 529
A + + ++Y + KGV++V+ + + G+ + D+V+L QIL NLVSN++KFT
Sbjct: 557 FADTMRTLENIYRPICENKGVELVI---ENQLDGNVEIFTDQVRLNQILFNLVSNAVKFT 613
Query: 530 SEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQ 589
G + + A +++ F+ G D N L+
Sbjct: 614 PSGCVRLHAELEQ----------------------FY----GAD----------NSVLV- 636
Query: 590 FEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIAD 649
E+ DTG GI DK + +FE FVQ + T G GLGL IV+++V ++ G++ +
Sbjct: 637 --VEISDTGIGIESDKLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRS 694
Query: 650 KEPGERGVCFRFNVLLTAVCERER 673
++ +G F V+ V +RER
Sbjct: 695 QKG--QGTTF---VVTLPVKDRER 713
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+VED+ + A K + + ++G EA + + K YD I+M
Sbjct: 735 KVLLVEDNHTNAFILKAFCTKYKMQVDWAKDGLEAMEFL-----------KDHSYDLILM 783
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D ++P + G E T+ IR + + PI A TA + ++AG ++ L KP++++
Sbjct: 784 DNQLPHLGGIETTKEIR---QNLKLGTPIYACTADTAQETSDAFMEAGANYVLLKPIKEN 840
Query: 1084 KL 1085
L
Sbjct: 841 AL 842
>sp|Q9KLK7|LUXQ_VIBCH Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=luxQ PE=1 SV=1
Length = 857
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 158/331 (47%), Gaps = 62/331 (18%)
Query: 350 IAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASL 409
I +I+ G I IA+A K + A +AE + + LAK SH++R L
Sbjct: 446 IISIITQGQDITTIAEAEK----------QSQAARREAEESARVRAEFLAKMSHELRTPL 495
Query: 410 AAIIGLVELCHEDANPGTD-LAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEF 468
++G+ +L P D E++ ++ + + LL +LN +++ S++E GK + + EF
Sbjct: 496 NGVLGVSQLLKR--TPLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEF 553
Query: 469 NLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKF 528
L +L+ + +Y + +KG+++V+ + ++ + VR D++++ QIL NL++N++KF
Sbjct: 554 RLKELVCAIDRIYRPLCNEKGLELVV---NSNITTAAIVRSDQIRINQILFNLLNNAIKF 610
Query: 529 TSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLL 588
T +G I V L +E +P L
Sbjct: 611 THQGSIRVE----------------------------------------LQLIEGDP-LA 629
Query: 589 QFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIA 648
Q +V DTG GI + IFE F+Q + T G GLGL IV S+V ++ G++ ++
Sbjct: 630 QLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVS 689
Query: 649 DKEPGERGVCFRFNVLLTAVCERERPDTDEE 679
E G+ RF + L + E+PD ++
Sbjct: 690 ----SEYGIGTRFEIQL-PIELVEKPDAPQQ 715
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 20/132 (15%)
Query: 958 KPLNGK--KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
+PL K + L+VED+ + A K G +G +A + E K
Sbjct: 723 QPLFDKTLRVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIE-----------ELKI 771
Query: 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPII--ALTAHAMAGVASKIVDAGMD 1073
YD ++MD ++P ++G E TR I+K +H+P++ A TA + AG +
Sbjct: 772 HDYDLVLMDNQLPYLDGVETTRTIKKV-----LHLPVVVYACTADGLEETRQAFFHAGAE 826
Query: 1074 FHLTKPLQKDKL 1085
+ L KPL++ L
Sbjct: 827 YVLVKPLKEQTL 838
>sp|Q9C5U0|AHK4_ARATH Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1
Length = 1080
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 175/372 (47%), Gaps = 41/372 (11%)
Query: 337 NNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATE-QAERKSMNKT 395
+ K + L VL + ++G + I A + +M + +AE + K+
Sbjct: 415 HQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKS 474
Query: 396 FALAKASHDVRASLAAIIGLVELC--HEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
LA SH++R + I+G++ + E ++ D A+ + C K L+ ++N V++
Sbjct: 475 QFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQT---AQVCGKALIALINEVLDR 531
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
+KIEAGK+EL F++ +L++V+ ++ K +++ + D V+GD +
Sbjct: 532 AKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKSIELAVFVSDKV---PEIVKGDSGR 588
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKS-------------FKQDIIASNRNVISKC 560
+QI+ NLV NS+KFT +GHI V+ + ++S +++I ++
Sbjct: 589 FRQIIINLVGNSVKFTEKGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSSYNT 648
Query: 561 LSKLFFRNKEGFDDLDAL-HSVERNPNLLQFEF--------EVDDTGKGIPKDKQNSIFE 611
LS + +G + D+ H V +L +F+ ++DTG GIP Q +F
Sbjct: 649 LSG--YEAADGRNSWDSFKHLVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQGRVFM 706
Query: 612 EFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL------ 665
F+Q + + G G+GL I + +V LM+G+I + G F F +L
Sbjct: 707 PFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFISRP--HIGSTFWFTAVLEKCDKC 764
Query: 666 TAVCERERPDTD 677
+A+ ++P+ +
Sbjct: 765 SAINHMKKPNVE 776
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 20/138 (14%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALP-- 1017
L GKK LVV+D+ + +V + L K GA+ +G+ A + +P
Sbjct: 942 LTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLL------------QIPHT 989
Query: 1018 YDYIMMDCEMPVMNGWEATRLIR------KEEEQYDVHIPIIALTAHAMAGVASKIVDAG 1071
+D MD +MP M+G+EATR IR KE+ + H+PI+A+TA + + + +G
Sbjct: 990 FDACFMDIQMPQMDGFEATRQIRMMEKETKEKTNLEWHLPILAMTADVIHATYEECLKSG 1049
Query: 1072 MDFHLTKPLQKDKLLDVV 1089
MD +++KP +++ L V
Sbjct: 1050 MDGYVSKPFEEENLYKSV 1067
>sp|P54302|LUXQ_VIBHA Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio harveyi
GN=luxQ PE=1 SV=1
Length = 859
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 154/328 (46%), Gaps = 66/328 (20%)
Query: 350 IAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASL 409
I+G+I G I + +A K+ A +AE+ + + LAK SH++R +
Sbjct: 449 ISGIIVQGQDITTLIEAEKQSNI----------ARREAEKSAQARADFLAKMSHEIRTPI 498
Query: 410 AAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFN 469
I+G+ +L +D+ + + ++ + LL +LN +++ SKIE GK + + F+
Sbjct: 499 NGILGVAQLL-KDSVDTQEQKNQIDVLCHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFS 557
Query: 470 LAQLLEEVVDMYYHVGIKKGVDVV----LDPCDGSVLGSCHVRGDRVKLKQILCNLVSNS 525
+ + ++Y + KGV++V LDP + + D+V+L QIL NLVSN+
Sbjct: 558 FTDTMRTLENIYRPICTNKGVELVIENELDP-------NVEIFTDQVRLNQILFNLVSNA 610
Query: 526 MKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNP 585
+KFT G I + A +L+ + E +
Sbjct: 611 VKFTPIGSIRLHA-----------------------------------ELEQFYGAENSV 635
Query: 586 NLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEI 645
++ E+ DTG GI DK + +FE FVQ + T G GLGL IV+++V +++G++
Sbjct: 636 LVV----ELTDTGIGIESDKLDQMFEPFVQEESTTTREYGGSGLGLTIVKNLVDMLEGDV 691
Query: 646 AIADKEPGERGVCFRFNVLLTAVCERER 673
+ + G G F V+ V +RER
Sbjct: 692 QVRSSKGG--GTTF---VITLPVKDRER 714
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K L+VED+ + A K + + ++G +A + +LSD YD I+M
Sbjct: 736 KVLLVEDNHTNAFILQAFCKKYKMQVDWAKDGLDAME----LLSDT-------TYDLILM 784
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D ++P + G E T IR + + PI A TA + + AG ++ + KP++++
Sbjct: 785 DNQLPHLGGIETTHEIR---QNLRLGTPIYACTADTAKETSDAFMAAGANYVMLKPIKEN 841
Query: 1084 KL 1085
L
Sbjct: 842 AL 843
>sp|P0AEC5|BARA_ECOLI Signal transduction histidine-protein kinase BarA OS=Escherichia
coli (strain K12) GN=barA PE=1 SV=1
Length = 918
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 135/281 (48%), Gaps = 46/281 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++A+ + K+ LA SH++R L +IG L + T ++L I + +
Sbjct: 282 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQ-RDHLNTIERSANN 340
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL I+N V++ SK+EAGK+ L F L L+EVV + H KG+++ L+ V
Sbjct: 341 LLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN-IKSDV- 398
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+V GD ++L+QI+ NLV N++KFT G+I + V+K++ SN V
Sbjct: 399 -PDNVIGDPLRLQQIITNLVGNAIKFTENGNIDI--LVEKRAL------SNTKV------ 443
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
Q E ++ DTG GIP+ Q+ +F+ F Q +
Sbjct: 444 --------------------------QIEVQIRDTGIGIPERDQSRLFQAFRQADASISR 477
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I Q +V+ M G+I+ + RG F F++
Sbjct: 478 RHGGTGLGLVITQKLVNEMGGDISFHSQP--NRGSTFWFHI 516
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 13/120 (10%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
+ V+D+ LK+ A+L + E+C +G +A + K +P+D I+MD
Sbjct: 671 MAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVE-----------RAKQMPFDLILMDI 719
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP M+G A LI + Q P+IA+TAHAMAG K++ AGM +L KP+++++L
Sbjct: 720 QMPDMDGIRACELIHQLPHQQQT--PVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>sp|P0AEC6|BARA_ECOL6 Signal transduction histidine-protein kinase BarA OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=barA
PE=1 SV=1
Length = 918
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 135/281 (48%), Gaps = 46/281 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++A+ + K+ LA SH++R L +IG L + T ++L I + +
Sbjct: 282 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQ-RDHLNTIERSANN 340
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL I+N V++ SK+EAGK+ L F L L+EVV + H KG+++ L+ V
Sbjct: 341 LLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN-IKSDV- 398
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+V GD ++L+QI+ NLV N++KFT G+I + V+K++ SN V
Sbjct: 399 -PDNVIGDPLRLQQIITNLVGNAIKFTENGNIDI--LVEKRAL------SNTKV------ 443
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
Q E ++ DTG GIP+ Q+ +F+ F Q +
Sbjct: 444 --------------------------QIEVQIRDTGIGIPERDQSRLFQAFRQADASISR 477
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I Q +V+ M G+I+ + RG F F++
Sbjct: 478 RHGGTGLGLVITQKLVNEMGGDISFHSQP--NRGSTFWFHI 516
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 13/120 (10%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
+ V+D+ LK+ A+L + E+C +G +A + K +P+D I+MD
Sbjct: 671 MAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVE-----------RAKQMPFDLILMDI 719
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP M+G A LI + Q P+IA+TAHAMAG K++ AGM +L KP+++++L
Sbjct: 720 QMPDMDGIRACELIHQLPHQQQT--PVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>sp|P0AEC7|BARA_ECO57 Signal transduction histidine-protein kinase BarA OS=Escherichia
coli O157:H7 GN=barA PE=3 SV=1
Length = 918
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 135/281 (48%), Gaps = 46/281 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++A+ + K+ LA SH++R L +IG L + T ++L I + +
Sbjct: 282 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQ-RDHLNTIERSANN 340
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL I+N V++ SK+EAGK+ L F L L+EVV + H KG+++ L+ V
Sbjct: 341 LLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN-IKSDV- 398
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+V GD ++L+QI+ NLV N++KFT G+I + V+K++ SN V
Sbjct: 399 -PDNVIGDPLRLQQIITNLVGNAIKFTENGNIDI--LVEKRAL------SNTKV------ 443
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
Q E ++ DTG GIP+ Q+ +F+ F Q +
Sbjct: 444 --------------------------QIEVQIRDTGIGIPERDQSRLFQAFRQADASISR 477
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I Q +V+ M G+I+ + RG F F++
Sbjct: 478 RHGGTGLGLVITQKLVNEMGGDISFHSQP--NRGSTFWFHI 516
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 13/120 (10%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
+ V+D+ LK+ A+L + E+C +G +A + K +P+D I+MD
Sbjct: 671 MAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVE-----------RAKQMPFDLILMDI 719
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP M+G A LI + Q P+IA+TAHAMAG K++ AGM +L KP+++++L
Sbjct: 720 QMPDMDGIRACELIHQLPHQQQT--PVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>sp|P59342|BARA_SHIFL Signal transduction histidine-protein kinase BarA OS=Shigella
flexneri GN=barA PE=3 SV=1
Length = 918
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 135/281 (48%), Gaps = 46/281 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++A+ + K+ LA SH++R L +IG L + T ++L I + +
Sbjct: 282 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQ-RDHLNTIERSANN 340
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL I+N V++ SK+EAGK+ L F L L+EVV + H KG+++ L+ V
Sbjct: 341 LLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN-IKSDV- 398
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+V GD ++L+QI+ NLV N++KFT G+I + V+K++ SN V
Sbjct: 399 -PDNVIGDPLRLQQIITNLVGNAIKFTENGNIDI--LVEKRAL------SNTKV------ 443
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
Q E ++ DTG GIP+ Q+ +F+ F Q +
Sbjct: 444 --------------------------QIEVQIRDTGIGIPERDQSRLFQAFRQADASISR 477
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
G GLGL I Q +V+ M G+I+ + RG F F++
Sbjct: 478 RHGGTGLGLVITQKLVNEMGGDISFHSQP--NRGSTFWFHI 516
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 13/120 (10%)
Query: 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025
+ V+D+ LK+ A+L + E+C +G +A + K +P+D I+MD
Sbjct: 671 MAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVE-----------RAKQMPFDLILMDI 719
Query: 1026 EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKL 1085
+MP M+G A LI + Q P+IA+TAHAMAG K++ AGM +L KP+++++L
Sbjct: 720 QMPDMDGIRACELIHQLPHQRQT--PVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>sp|Q9C5U2|AHK2_ARATH Histidine kinase 2 OS=Arabidopsis thaliana GN=AHK2 PE=1 SV=1
Length = 1176
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 175/361 (48%), Gaps = 48/361 (13%)
Query: 341 SLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAK 400
S+++LV+ F+ G I + +A R + K +AE + K+ LA
Sbjct: 543 SILVLVITFLVGYI--------LYEAINRIATVEEDCQKMRELKARAEAADIAKSQFLAT 594
Query: 401 ASHDVRASLAAIIGLVELCHEDANPGTDL-AENLGLIRTC---SKDLLGILNSVMEMSKI 456
SH++R + ++G++++ + TDL A+ + +T KDL ++N V++ +KI
Sbjct: 595 VSHEIRTPMNGVLGMLKMLMD-----TDLDAKQMDYAQTAHGSGKDLTSLINEVLDQAKI 649
Query: 457 EAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVR----GDRV 512
E+G++EL F++ +L+ V + +KG+++ +V S V GD
Sbjct: 650 ESGRLELENVPFDMRFILDNVSSLLSGKANEKGIEL-------AVYVSSQVPDVVVGDPS 702
Query: 513 KLKQILCNLVSNSMKFTSE-GHI--SVRAA--VKKKSFKQDIIASNRNVIS-----KCLS 562
+ +QI+ NLV NS+KFT E GHI SV A VK+ +D + R + + +S
Sbjct: 703 RFRQIITNLVGNSIKFTQERGHIFISVHLADEVKEPLTIEDAVLKQRLALGCSESGETVS 762
Query: 563 KLFFRNKEG-FDDLDALHSVE-RNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
N G + + +S E +N + ++ V+DTG GIP D Q IF F+Q +
Sbjct: 763 GFPAVNAWGSWKNFKTCYSTESQNSDQIKLLVTVEDTGVGIPVDAQGRIFTPFMQADSST 822
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL------TAVCERERP 674
G G+GL I + +V LM+GE+ EPG G F F + T++ + ER
Sbjct: 823 SRTYGGTGIGLSISKRLVELMQGEMGFVS-EPG-IGSTFSFTGVFGKAETNTSITKLERF 880
Query: 675 D 675
D
Sbjct: 881 D 881
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 28/148 (18%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
L K+ LVV+D+ + +V L K GA +GK A L+ L+ +D
Sbjct: 1032 LREKQILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAA-------LAMLKPPHN---FD 1081
Query: 1020 YIMMDCEMPVMNGWEATRLIRKEEEQYD------------------VHIPIIALTAHAMA 1061
MD +MP M+G+EATR +R+ E + + H+PI+A+TA +
Sbjct: 1082 ACFMDLQMPEMDGFEATRRVRELEREINKKIASGEVSAEMFCKFSSWHVPILAMTADVIQ 1141
Query: 1062 GVASKIVDAGMDFHLTKPLQKDKLLDVV 1089
+ + GMD +++KP +++ L V
Sbjct: 1142 ATHEECMKCGMDGYVSKPFEEEVLYTAV 1169
>sp|P16575|BVGS_BORPE Virulence sensor protein BvgS OS=Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251) GN=bvgS PE=1 SV=3
Length = 1238
Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 142/299 (47%), Gaps = 54/299 (18%)
Query: 375 AALIKQM-NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC---HEDANPGTDLA 430
A L++++ +A E A+ + KT LA SH++R + AIIG++EL D P
Sbjct: 700 AELLRKLHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPTDQEPDR--- 756
Query: 431 ENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV 490
+++ + ++ LL ++ +++++KIEAGK +L L L E + ++ + +KG+
Sbjct: 757 QSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLARQKGI 816
Query: 491 DVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDII 550
++VL ++G V D +++KQ+L NLV N++KFT+EG + + +
Sbjct: 817 ELVLK---TDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLAVTARP-------- 865
Query: 551 ASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIF 610
D DA H +F V DTG GI + Q +F
Sbjct: 866 -----------------------DGDAAH----------VQFSVSDTGCGISEADQRQLF 892
Query: 611 EEFVQVKETA-LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
+ F QV +A G G GLGL I + +V LM G + + PG G ++ LT V
Sbjct: 893 KPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTL-VMRSAPGV-GTTVSVDLRLTMV 949
>sp|P40330|BVGS_BORPA Virulence sensor protein BvgS OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=bvgS PE=3 SV=2
Length = 1238
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 134/278 (48%), Gaps = 52/278 (18%)
Query: 375 AALIKQM-NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC---HEDANPGTDLA 430
A L++++ +A E A+ + KT LA SH++R + AIIG++EL D P
Sbjct: 700 AELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQEPDR--- 756
Query: 431 ENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV 490
+++ + ++ LL ++ +++++KIEAGK +L L L E + ++ + +KG+
Sbjct: 757 QSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDGLARQKGI 816
Query: 491 DVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDII 550
++VL ++G V D +++KQ+L NLV N++KFT+EG + + +
Sbjct: 817 ELVL---KTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARP-------- 865
Query: 551 ASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIF 610
D +A H +F V DTG GI + Q +F
Sbjct: 866 -----------------------DGEAAH----------VQFSVSDTGCGISEADQRQLF 892
Query: 611 EEFVQVKETA-LGHQEGLGLGLGIVQSMVHLMKGEIAI 647
+ F QV +A G G GLGL I + +V LM G + +
Sbjct: 893 KPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930
>sp|P26762|BVGS_BORBR Virulence sensor protein BvgS OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=bvgS PE=3 SV=2
Length = 1238
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 142/299 (47%), Gaps = 54/299 (18%)
Query: 375 AALIKQM-NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELC---HEDANPGTDLA 430
A L++++ +A E A+ + KT LA SH++R + AIIG++EL D P
Sbjct: 700 AELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQEPDR--- 756
Query: 431 ENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGV 490
+++ + ++ LL ++ +++++KIEAGK +L L L E + ++ + +KG+
Sbjct: 757 QSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRVFDGLARQKGI 816
Query: 491 DVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDII 550
++VL ++G V D +++KQ+L NLV N++KFT+EG + + +
Sbjct: 817 ELVL---KTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARP-------- 865
Query: 551 ASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIF 610
D +A H +F V DTG GI + Q +F
Sbjct: 866 -----------------------DGEAAH----------VQFSVSDTGCGISEADQRQLF 892
Query: 611 EEFVQVKETA-LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAV 668
+ F QV +A G G GLGL I + +V LM G + + PG G ++ LT V
Sbjct: 893 KPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTL-VMRSAPGV-GTTVSVDLRLTMV 949
>sp|Q869S5|DOKA_DICDI Hybrid signal transduction protein dokA OS=Dictyostelium discoideum
GN=dokA PE=1 SV=1
Length = 1671
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 133/301 (44%), Gaps = 59/301 (19%)
Query: 374 CAALIKQMNATEQAERKSMN----KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL 429
C + ++ QAE ++ KT + SH++R I+G+ +L + T
Sbjct: 1020 CITFVFDLSRYRQAEMAAIEATRLKTQFITNISHELRTPCHGIVGMSQLLLDSQLTNTQ- 1078
Query: 430 AENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG 489
+N+ I+ + L+ ++N +++ SK+E GK+ L E F L ++EEV+D +KG
Sbjct: 1079 RDNIDSIKRSTDSLISLINDILDFSKLEYGKVTLENESFELLPMIEEVLDSQATAANRKG 1138
Query: 490 VDVVLDPCDGSVLGSCH-----VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
+D++ V+G + + GDR LK++L NLV N++KFT G + + + +S
Sbjct: 1139 IDLIF------VMGRDYPVPPVIFGDRNSLKKVLLNLVGNAVKFTETGFVLLEISTDYES 1192
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
Q + F V D+G GIP++
Sbjct: 1193 GDQ----------------------------------------ISLRFTVKDSGIGIPEN 1212
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAI--ADKEPGERGVCFRFN 662
K IF F Q+ + G GLGL + +V LM G I + D+E G +G F F
Sbjct: 1213 KIEQIFVPFGQIDGSFSRKYGGSGLGLSFCKELVALMGGYIRVESGDQE-GGKGTTFWFA 1271
Query: 663 V 663
+
Sbjct: 1272 I 1272
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 15/123 (12%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
K LV ED+ I +KV L KLG V NG +A + + + P I+
Sbjct: 1518 KYILVAEDNDINIKVVVRQLEKLGYTAIVGINGLKALEII-----------GSFPICLIL 1566
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
+DC+MP M+G+ + ++R+ E IPIIA+TA+ + + GMD +L+KP++
Sbjct: 1567 LDCQMPQMDGFTCSTILRQIEPT-GQRIPIIAMTAN---DSKDRCFEVGMDDYLSKPVRV 1622
Query: 1083 DKL 1085
D+L
Sbjct: 1623 DRL 1625
>sp|Q54YH4|DHKB_DICDI Hybrid signal transduction histidine kinase B OS=Dictyostelium
discoideum GN=dhkB PE=1 SV=1
Length = 1969
Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 130/283 (45%), Gaps = 50/283 (17%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A +AE + K L SH++R + ++ ++ T E L I+
Sbjct: 950 ALRKAEAANEAKVIFLTTVSHELRTPINGVLASADILERTTLDSTQ-KEFLNCIKLSGNY 1008
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD--VVLDPCDGS 500
LL ++N +++ SKIEAGKME+++ +F++ ++L+ + + +KG+D + +DP
Sbjct: 1009 LLDLINDILDYSKIEAGKMEIIKYDFSILKMLDNSIRIVSKNIYEKGLDLCIFIDPNVPV 1068
Query: 501 VLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKC 560
+ V GD+ ++KQIL N +SNS+KFT+ G I +R ++
Sbjct: 1069 I-----VNGDQRRIKQILLNFLSNSIKFTNHGQIIIRVKLESD----------------- 1106
Query: 561 LSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620
D+ HS+ +F+V+D+G GI + N +F F Q+
Sbjct: 1107 ---------------DSTHSL--------IKFDVEDSGIGIKTEHLNQLFASFSQIDSGN 1143
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
+G GLGL I + + +M G++ + K G F F +
Sbjct: 1144 SRKYQGTGLGLSISKRLCKMMGGDVKV--KSEFGVGSTFSFTI 1184
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 21/138 (15%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K L+VED+ + +K+ S +L G F+V NG EA + V K+G YD I+
Sbjct: 1839 EKILLVEDNFVNVKIFSKLLKDSGYIFDVAHNGVEAVECV--------KKGA---YDLIL 1887
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDV---------HIPIIALTAHAMAGVASKIVDAGMD 1073
MDC+MP M+G+EAT IR+ E+ + H+ I+ALTA++ K + GM+
Sbjct: 1888 MDCQMPEMDGFEATTAIRELEKSNLIESPPSKKHSHVVIVALTANSGYKDKQKCLSVGMN 1947
Query: 1074 FHLTKPLQ-KDKLLDVVK 1090
L KP++ D L+ ++K
Sbjct: 1948 DFLQKPIKTSDILIQMIK 1965
>sp|Q9P7Q7|MAK1_SCHPO Peroxide stress-activated histidine kinase mak1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mak1 PE=3 SV=1
Length = 1639
Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 131/280 (46%), Gaps = 54/280 (19%)
Query: 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG 445
+A+R +K L+ SH++R L I G+V E L+ +I+ +K LL
Sbjct: 986 EAQRIVRSKMQYLSNMSHEIRTPLIGITGMVSFLLETQMSAEQLSY-ARIIQQSAKSLLT 1044
Query: 446 ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVD----VVLDPCDGSV 501
++N ++++SK+ AG M+L + F++ ++E+ + + KG++ V +D D
Sbjct: 1045 VINDILDLSKVRAGMMKLTSQRFSVRAMMEDANETLGTLAFSKGIELNYTVDIDVPDI-- 1102
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
V GD ++++Q+ N++ N++KFT+ G + R +V+K
Sbjct: 1103 -----VFGDNMRMRQVALNVIGNAIKFTNVGEVFTRCSVEK------------------- 1138
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
++ + N + ++E DTG+G +D Q +F+ F QV+ + L
Sbjct: 1139 -------------------IDYSTNTVVLKWECIDTGQGFNRDDQLQMFKPFSQVESSTL 1179
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
G GLGL I + +V L G ++ + RGV RF
Sbjct: 1180 PRHGGSGLGLVISKELVELHNGSMSCQSR----RGVGTRF 1215
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 9/132 (6%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G L+ ED+ I +KV S L ++G KF+V +G + + K K Y I
Sbjct: 1505 GFSVLLAEDNIINIKVISRYLERIGVKFKVTMDGLQCVEEW--------KREKPNFYSLI 1556
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
+MD +MPVM+G++A IRK E + D +PI+AL+A+A+ V D+G D +L KP+
Sbjct: 1557 LMDLQMPVMDGYQACNEIRKYELENDYPKVPIVALSANALPHVVLSCKDSGFDSYLAKPI 1616
Query: 1081 QKDKLLDVVKSI 1092
L ++ I
Sbjct: 1617 TLQHLSLIISGI 1628
>sp|Q54SP4|DHKD_DICDI Hybrid signal transduction histidine kinase D OS=Dictyostelium
discoideum GN=dhkD PE=2 SV=1
Length = 1546
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 129/285 (45%), Gaps = 52/285 (18%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453
KT A SH++R LA I+G + +D N ++ ++L ++ ++ LL I+N+++++
Sbjct: 212 KTQFFANVSHELRTPLALIVGPTDKLLKDENVDINVRKDLEIVARNARGLLKIVNNLLDI 271
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVK 513
S++EAGKM L NL Q + + + + +K +D + ++ + D K
Sbjct: 272 SRLEAGKMNLNYSMVNLGQTVHLIASCFEILAREKSLDFSIITPSEPMMAAI----DADK 327
Query: 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFD 573
+++++ NL+SN+ KFT G AV KC+
Sbjct: 328 MQRVITNLISNAFKFTPSG-----GAV------------------KCI------------ 352
Query: 574 DLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633
L + +PN F+ V DTG GIP + IFE F QV ++ G GLGL I
Sbjct: 353 ----LEKFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFERFRQVDGSSTRKHGGTGLGLSI 408
Query: 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDE 678
V+ V L G + I + G G F + LT P+ DE
Sbjct: 409 VKEFVTLHGGTVTIHNISTG--GAQFTLRLPLT-------PNMDE 444
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 124/276 (44%), Gaps = 40/276 (14%)
Query: 402 SHDVRASLAAIIGLVELC--------------HEDANPGTDLAENLGLIRTCSKDLLGIL 447
SH++R L I+G +L + + + L I C+ ++
Sbjct: 749 SHELRTPLNGILGWCQLLLYDIDSGGSSGGGSGSISGDDSTVRTGLETIERCASSQNQLI 808
Query: 448 NSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-PCDGSVLGSC- 505
N +++MS I K L+ + +L L+E + K + V + +G S
Sbjct: 809 NDLLDMSLIIGDKFSLILGDVDLPILIENAISSILVTAQSKKISVHSNIQGEGEEESSIL 868
Query: 506 -HVRGDRVKLKQILCNLVSNSMKFTSE-GHISVRAAVKKKSFKQDIIASNRNVISKCLSK 563
++ GD+ +L+Q++ NL+SNS+KFT E G I + V + +R V+ C +
Sbjct: 869 RNIVGDKARLQQVIWNLLSNSIKFTKEKGRIHLNLKVVNQ-------IPSREVLGFCSNP 921
Query: 564 LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH 623
+F +++ R+ + F + D GKGIPK S+F+ F Q ++
Sbjct: 922 MF-------------NTINRHGDRWIL-FTITDNGKGIPKQFLPSVFDRFKQADCSSTRS 967
Query: 624 QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659
GLG+GL I Q+++HL KG + A+ E +G F
Sbjct: 968 YGGLGIGLSITQNIIHLHKGAV-YANSEGENKGSQF 1002
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 14/142 (9%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
L G + ++V+D + S++L KLGAK + + +A+ +C K P
Sbjct: 1355 LGGIQIMLVDDLEETTHLFSSMLYKLGAKRIDTFQRVSDAYAFLCD-------SSKPQP- 1406
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEE--QYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076
D I+ D MP +G+ R +R E+ + PIIALTA + K++ +G D H
Sbjct: 1407 DIILSDLTMPFEDGYSMVRKLRDREKINTQNKKTPIIALTASVSSSDKEKVLKSGFDLHC 1466
Query: 1077 TKPLQKDKLLDVVKSIDETMEK 1098
+KP+ L++ SI +EK
Sbjct: 1467 SKPVN---FLELSNSILTLIEK 1485
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 19/149 (12%)
Query: 950 QSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDL 1009
QS KP+ LVVED+ + + + +L K F V AFD V I
Sbjct: 561 QSQENIHNKPI----VLVVEDNPEMNRFIAELLSKY--YFVVT-----AFDGVEGI---- 605
Query: 1010 RKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVD 1069
++ +A+ D I+ DC MP M+G E +R +EQ+D +IPI+ LTA A + K++
Sbjct: 606 -EKTRAITPDLIVTDCMMPRMSGDEMVEQLR-SDEQFD-NIPILLLTAKADENLRIKLLQ 662
Query: 1070 AGMDFHLTKPLQKDKLLDVVKSIDETMEK 1098
G+ ++ KP ++L+ V ++ TM+K
Sbjct: 663 NGVSDYVNKPFSSEELVARVVNL-MTMKK 690
>sp|P48027|GACS_PSESY Sensor protein GacS OS=Pseudomonas syringae pv. syringae GN=gacS
PE=3 SV=1
Length = 907
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 123/272 (45%), Gaps = 45/272 (16%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKD 442
A ++A S K+ LA SH++R L I+G L + + LG I + +
Sbjct: 264 ARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTPRQF-DYLGTIEKSADN 322
Query: 443 LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVL 502
LL I+N +++ SKIEAGK+ L FNL LL++ + + K +++V + L
Sbjct: 323 LLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPL 382
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ GD ++L+QIL NLVSN++KFT EG I RA ++ ++ +
Sbjct: 383 A---LSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEE---------------- 423
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
H+ Q V DTG G+ ++F+ F Q +
Sbjct: 424 ----------------HA--------QLRISVQDTGIGLSSQDVRALFQAFSQADNSLSR 459
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE 654
G GLGL I + ++ M GEI + D PGE
Sbjct: 460 QPGGTGLGLVISKRLIEQMGGEIGV-DSTPGE 490
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 14/134 (10%)
Query: 959 PLNGK--KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKAL 1016
PL+ + + L V+D+ L + +L +GA+ G A + V ++E
Sbjct: 651 PLSSRAPRVLCVDDNPANLLLVQTLLEDMGAEVVAVEGGYAAVNAV-------QQEA--- 700
Query: 1017 PYDYIMMDCEMPVMNGWEATRLIRK-EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075
+D ++MD +MP M+G +AT IR E E+ +PI+ALTAHAMA ++ +GMD +
Sbjct: 701 -FDLVLMDVQMPGMDGRQATEAIRAWEAERNQSSLPIVALTAHAMANEKRSLLQSGMDDY 759
Query: 1076 LTKPLQKDKLLDVV 1089
LTKP+ + +L VV
Sbjct: 760 LTKPISERQLAQVV 773
>sp|Q86CZ2|DHKK_DICDI Hybrid signal transduction histidine kinase K OS=Dictyostelium
discoideum GN=dhkK PE=1 SV=1
Length = 1213
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 156/353 (44%), Gaps = 49/353 (13%)
Query: 317 VQSVYVLAYDSN--------GLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAK 368
V S+Y+L + +N G+ S++ R++ ++ ++ V + I +I + I +A +
Sbjct: 735 VLSIYLLFFVANLYGHEYVQGIPSIIIRSH-MNFIIDVTIIIMTLIFTLCYQYFIDEAHR 793
Query: 369 REMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTD 428
A L +A +A + + LA SH++R L +IG+ L + N +
Sbjct: 794 ETKLKNAQLTIAKDAAIEAYQA---RQEFLATMSHEIRTPLNGLIGMATLLRDSHNLPPE 850
Query: 429 LAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKK 488
+++C LL ++N ++++SK+EA +M L F + +L +++ + +K
Sbjct: 851 EKTMAKAVKSCGDILLRLVNDILDLSKLEANQMGLEHIPFRMRELTQQICHVLSGQANEK 910
Query: 489 GVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQD 548
+ + C+ S + GD ++ QIL NL N++KFT G++ + D
Sbjct: 911 NIHL---SCEVSDKIPSILLGDSGRILQILMNLTGNALKFTQSGYVKIII---------D 958
Query: 549 IIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNS 608
+I ++S L E N F V DTG G+P +
Sbjct: 959 LIEEESELVS-------------------LKKGEYN-----ISFRVKDTGIGVPVESHQK 994
Query: 609 IFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661
IFE FVQ + G GLGL + +V LMKGEI + + P G F F
Sbjct: 995 IFEAFVQADPSDSRKYGGSGLGLYLCAKLVRLMKGEIGVYNN-PDCDGSTFWF 1046
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 16/137 (11%)
Query: 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPY 1018
P + K L+ ED+ I +V L K+G K EV NG E +L L ++ Y
Sbjct: 1071 PQDCVKVLIAEDNIINQRVAVKFLEKIGIKAEVAGNGNE-------VLEILERQH----Y 1119
Query: 1019 DYIMMDCEMPVMNGWEATRLIRKEEEQYDVH-----IPIIALTAHAMAGVASKIVDAGMD 1073
D I MD +MP+++G ++ IR+ E+ + + I I LTA+ M+ + D GM+
Sbjct: 1120 DLIFMDFQMPILDGLRCSKTIREFEQNHKWNRICPSIFICGLTANTMSTDKKRCFDHGMN 1179
Query: 1074 FHLTKPLQKDKLLDVVK 1090
++KP Q ++L ++
Sbjct: 1180 HFISKPFQLEQLRSAIE 1196
>sp|P0AEC4|ARCB_SHIFL Aerobic respiration control sensor protein ArcB OS=Shigella
flexneri GN=arcB PE=3 SV=1
Length = 778
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 134/295 (45%), Gaps = 53/295 (17%)
Query: 388 ERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGIL 447
ER S +KT ++ SH++R L I+GL + D + + L I + L I
Sbjct: 277 ERASRDKTTFISTISHELRTPLNGIVGLSRILL-DTELTAEQEKYLKTIHVSAVTLGNIF 335
Query: 448 NSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH- 506
N +++M K+E K++L + + L ++ ++ +KG+ L+P L H
Sbjct: 336 NDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPT----LPLPHQ 391
Query: 507 VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFF 566
V D +L+QIL NL+SN++KFT +G ++VR
Sbjct: 392 VITDGTRLRQILWNLISNAVKFTQQGQVTVRVR--------------------------- 424
Query: 567 RNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH-QE 625
+D+ D LH FEV+D+G GIP+D+ + IF + QVK++ G
Sbjct: 425 -----YDEGDMLH------------FEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
G G+GL + + + M G+I + ++ +G F + +V E DE+D
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQG--KGSTFTLTIHAPSVAEEVDDAFDEDD 520
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 18/172 (10%)
Query: 930 GAEAGASISSHCSSLQQVAAQSDGKCSEK--PLNGKKFLVVEDDAIVLKVTSAVLGKLGA 987
G + +++ H S VA + D E PL L+VED + + V +VL KLG
Sbjct: 494 GKGSTFTLTIHAPS---VAEEVDDAFDEDDMPLPALNVLLVEDIELNVIVARSVLEKLGN 550
Query: 988 KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYD 1047
+V GK A ++ K G+ YD +++D ++P M G + +R + K + D
Sbjct: 551 SVDVAMTGKAAL--------EMFKPGE---YDLVLLDIQLPDMTGLDISRELTKRYPRED 599
Query: 1048 VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETMEKQ 1099
+ P++ALTA+ + + ++AGMD L+KPL L ++K +T + +
Sbjct: 600 LP-PLVALTANVLKD-KQEYLNAGMDDVLSKPLSVPALTAMIKKFWDTQDDE 649
>sp|P0AEC3|ARCB_ECOLI Aerobic respiration control sensor protein ArcB OS=Escherichia coli
(strain K12) GN=arcB PE=1 SV=1
Length = 778
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 134/295 (45%), Gaps = 53/295 (17%)
Query: 388 ERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGIL 447
ER S +KT ++ SH++R L I+GL + D + + L I + L I
Sbjct: 277 ERASRDKTTFISTISHELRTPLNGIVGLSRILL-DTELTAEQEKYLKTIHVSAVTLGNIF 335
Query: 448 NSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH- 506
N +++M K+E K++L + + L ++ ++ +KG+ L+P L H
Sbjct: 336 NDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPT----LPLPHQ 391
Query: 507 VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFF 566
V D +L+QIL NL+SN++KFT +G ++VR
Sbjct: 392 VITDGTRLRQILWNLISNAVKFTQQGQVTVRVR--------------------------- 424
Query: 567 RNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH-QE 625
+D+ D LH FEV+D+G GIP+D+ + IF + QVK++ G
Sbjct: 425 -----YDEGDMLH------------FEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
G G+GL + + + M G+I + ++ +G F + +V E DE+D
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQG--KGSTFTLTIHAPSVAEEVDDAFDEDD 520
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 18/172 (10%)
Query: 930 GAEAGASISSHCSSLQQVAAQSDGKCSEK--PLNGKKFLVVEDDAIVLKVTSAVLGKLGA 987
G + +++ H S VA + D E PL L+VED + + V +VL KLG
Sbjct: 494 GKGSTFTLTIHAPS---VAEEVDDAFDEDDMPLPALNVLLVEDIELNVIVARSVLEKLGN 550
Query: 988 KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYD 1047
+V GK A ++ K G+ YD +++D ++P M G + +R + K + D
Sbjct: 551 SVDVAMTGKAAL--------EMFKPGE---YDLVLLDIQLPDMTGLDISRELTKRYPRED 599
Query: 1048 VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETMEKQ 1099
+ P++ALTA+ + + ++AGMD L+KPL L ++K +T + +
Sbjct: 600 LP-PLVALTANVLKD-KQEYLNAGMDDVLSKPLSVPALTAMIKKFWDTQDDE 649
>sp|P58363|ARCB_ECO57 Aerobic respiration control sensor protein ArcB OS=Escherichia coli
O157:H7 GN=arcB PE=3 SV=1
Length = 778
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 134/295 (45%), Gaps = 53/295 (17%)
Query: 388 ERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGIL 447
ER S +KT ++ SH++R L I+GL + D + + L I + L I
Sbjct: 277 ERASRDKTTFISTISHELRTPLNGIVGLSRILL-DTELTAEQEKYLKTIHVSAVTLGNIF 335
Query: 448 NSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCH- 506
N +++M K+E K++L + + L ++ ++ +KG+ L+P L H
Sbjct: 336 NDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPT----LPLPHQ 391
Query: 507 VRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFF 566
V D +L+QIL NL+SN++KFT +G ++VR
Sbjct: 392 VITDGTRLRQILWNLISNAVKFTQQGQVTVRVR--------------------------- 424
Query: 567 RNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH-QE 625
+D+ D LH FEV+D+G GIP+D+ + IF + QVK++ G
Sbjct: 425 -----YDEGDMLH------------FEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467
Query: 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEED 680
G G+GL + + + M G+I + ++ +G F + +V E DE+D
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQG--KGSTFTLTIHAPSVAEEVDDAFDEDD 520
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 18/172 (10%)
Query: 930 GAEAGASISSHCSSLQQVAAQSDGKCSEK--PLNGKKFLVVEDDAIVLKVTSAVLGKLGA 987
G + +++ H S VA + D E PL L+VED + + V +VL KLG
Sbjct: 494 GKGSTFTLTIHAPS---VAEEVDDAFDEDDMPLPALNVLLVEDIELNVIVARSVLEKLGN 550
Query: 988 KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYD 1047
+V GK A ++ K G+ YD +++D ++P M G + +R + K + D
Sbjct: 551 SVDVAMTGKAAL--------EMFKPGE---YDLVLLDIQLPDMTGLDISRELTKRYPRED 599
Query: 1048 VHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETMEKQ 1099
+ P++ALTA+ + + ++AGMD L+KPL L ++K +T + +
Sbjct: 600 LP-PLVALTANVLKD-KQEYLNAGMDDVLSKPLSVPALTAMIKKFWDTQDDE 649
>sp|P39453|TORS_ECOLI Sensor protein TorS OS=Escherichia coli (strain K12) GN=torS PE=1
SV=4
Length = 914
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 133/301 (44%), Gaps = 59/301 (19%)
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
L A+ R L +I+ A +AE+ S K+ LA SH++R L I+G +L +
Sbjct: 412 LAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD 471
Query: 422 DANPGTDLA-ENLGLIRTCSKDLLGILNSVMEMSKIEAG--KMELVEEEFNLAQLLEEVV 478
NP + ++L I + LL ILN +++ S IEAG + + +E F LLE +
Sbjct: 472 --NPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTL 529
Query: 479 DMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRA 538
+ G KG + L + C + GD +++Q++ NL+SN+++FT EG+I +R+
Sbjct: 530 QLMS--GRVKGRPIRLATAIADDM-PCALMGDPRRIRQVITNLLSNALRFTDEGYIILRS 586
Query: 539 AVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTG 598
+ Q+ EV+D+G
Sbjct: 587 RTDGE---------------------------------------------QWLVEVEDSG 601
Query: 599 KGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVC 658
GI K IF+ FVQV G + G GLGL I + M GE++ A P E G C
Sbjct: 602 CGIDPAKLAEIFQPFVQVS----GKRGGTGLGLTISSRLAQAMGGELS-ATSTP-EVGSC 655
Query: 659 F 659
F
Sbjct: 656 F 656
>sp|Q54RP6|DHKL_DICDI Hybrid signal transduction histidine kinase L OS=Dictyostelium
discoideum GN=dhkL PE=3 SV=1
Length = 1709
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 127/259 (49%), Gaps = 61/259 (23%)
Query: 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAEN----LGLIRTCSKDLLGILNSVMEM 453
L+ SHD+R ++ IIG+ +L + T L+++ L +I+ S LL I+N ++++
Sbjct: 835 LSMMSHDIRTPMSNIIGMADLLLD-----TSLSQHQHHYLEIIKNSSNTLLTIINDILDI 889
Query: 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVV--LDPCDGSVLGSCHVRGDR 511
SKIEAGK+++ E F+ + +VV+ KG++++ +DP ++L G
Sbjct: 890 SKIEAGKLDIDYESFDFNATVSQVVESMAQRVQSKGLELLSYVDPKIPNIL-----IGPS 944
Query: 512 VKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEG 571
+L QIL NL+ NS+KFT +G IS+ CL
Sbjct: 945 SRLNQILTNLLGNSLKFTDKGEISI----------------------CCLLN-------- 974
Query: 572 FDDLDALHSVERNPNLLQFEFEVD--DTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629
D+ D+ ++E +VD DTG GI K+ +F+ F Q + T G GL
Sbjct: 975 -DETDS-----------EYEIKVDVRDTGIGIKKEALPLLFKAFTQAEGTITRQYGGSGL 1022
Query: 630 GLGIVQSMVHL-MKGEIAI 647
GL I + +VHL GEI++
Sbjct: 1023 GLAICKELVHLAFNGEISV 1041
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
K LVV+D+ I +++ S +L +G + + +G +A + + D YD I +
Sbjct: 1570 KVLVVDDNHINIQILSKMLQTVGCEVDSVLSGADALAKINQSSGD--------SYDAIFL 1621
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
D +MP M+G++ +R IR+ E+++ + + IIA TA+ K DAGMD ++KP+++
Sbjct: 1622 DIQMPDMDGFQVSRKIREREKKFSLPRVAIIATTANVFKEDQLKCFDAGMDDFISKPIKR 1681
Query: 1083 DKLLDVVK 1090
++ +++K
Sbjct: 1682 AEIKEIIK 1689
>sp|Q54U87|DHKA_DICDI Hybrid signal transduction histidine kinase A OS=Dictyostelium
discoideum GN=dhkA PE=1 SV=1
Length = 2150
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 127/266 (47%), Gaps = 42/266 (15%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
E AE + K+ +A SH+VR L+ +IG+ +L E N + + + I+ S+ LL
Sbjct: 1378 EAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDLLLE-TNLSEEQRDYVQTIQKSSQALL 1436
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLD-PCDGSVLG 503
I+N +++ SK+E+ ++++ F++ + + V+ M V VD++L P + +
Sbjct: 1437 TIINDILDYSKLESRQLKMETLPFSIIETCQAVIHML-SVAANDDVDILLRVPPNVPRI- 1494
Query: 504 SCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSK 563
+ GD ++++Q+L NL+SN++KFTS GH+ +V
Sbjct: 1495 ---IFGDAMRMRQVLLNLLSNAIKFTSRGHVLTDISVD---------------------- 1529
Query: 564 LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH 623
D++ ++ ++DTG GIP+ +SIFE F Q +
Sbjct: 1530 ------------DSIPPTNTEEEIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRK 1577
Query: 624 QEGLGLGLGIVQSMV-HLMKGEIAIA 648
G GLGL I + ++ +M G I ++
Sbjct: 1578 YGGTGLGLSITKRLIEEVMGGTIQVS 1603
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 11/139 (7%)
Query: 952 DGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRK 1011
D + P KK L+VED+ + KV + + K+ NG+EA +
Sbjct: 2014 DTPVLQPPAYRKKALIVEDNELNRKVLAQLFKKIDWTISFAENGREALKEIT-------- 2065
Query: 1012 EGKALPYDYIMMDCEMPVMNGWEATRLIR-KEEEQYDVHIPIIALTAHAMAGVASKIVDA 1070
G+ +D + MDC+MPV++G++ T++IR KE E + I+AL+A + + +D+
Sbjct: 2066 -GERC-FDIVFMDCQMPVLDGFQTTKIIRSKERENNWKRMNIVALSAGSSSSFVQDCLDS 2123
Query: 1071 GMDFHLTKPLQKDKLLDVV 1089
GMD + KP+ L D +
Sbjct: 2124 GMDSFMGKPITLATLKDAL 2142
>sp|Q54Q69|DHKG_DICDI Hybrid signal transduction histidine kinase G OS=Dictyostelium
discoideum GN=dhkG PE=3 SV=1
Length = 3432
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 162/346 (46%), Gaps = 33/346 (9%)
Query: 323 LAYDSNGLGSLVSRNNKLSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMN 382
+ Y N + + N KL ++ L+ IA S I + + A +
Sbjct: 2424 ILYLENNFSTGIFSNEKLEILNLISSQIAISFSNARLFIKVNQLANQAFL---------- 2473
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP-GTDLAENLGLIRTCSK 441
A E+AE+ + K+ ++ SH++R L IIG +EL + +D E L + S+
Sbjct: 2474 AKEEAEKANKAKSDFISNMSHEMRTPLNHIIGSIELLKSYNHLFNSDQKELLDISAKSSE 2533
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVL--DPCDG 499
LL ++N+++++SK+E GK +L FNL LE+ + KGV + L +PC
Sbjct: 2534 SLLFMVNNILDLSKVEQGKTKLNLTNFNLVSFLEDSICAISPNAHLKGVYIALFINPC-- 2591
Query: 500 SVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAV-----------KKKSFKQD 548
L V GD L+Q++ NL++N++KFT G + ++ + KK+ +
Sbjct: 2592 --LSKIPVIGDINILRQVIVNLLTNAIKFTESGQVYIKLNLSINNNPTTTNNKKQLNTDN 2649
Query: 549 IIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQ---FEFEVDDTGKGIPKDK 605
+ + ++ L + DD + ++NP Q EV D+G GI +
Sbjct: 2650 DGDDDDDDDNENLDENNEDTSIDLDD-NGKVIYQKNPKSNQCYIVNIEVVDSGIGIKNED 2708
Query: 606 QNSIFEEFVQVKETALGHQEGLGLGLGIVQSMV-HLMKGEIAIADK 650
+F+ F Q++ + +G GLGL IV+ +V +LMKG+I + K
Sbjct: 2709 FGKLFQRFSQIECGSNRAYDGTGLGLSIVKDLVCNLMKGDIGVKSK 2754
Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 68/128 (53%), Gaps = 14/128 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFE--VCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
K L+VED+ + + +L KLG + E + NG E K+ K YD I
Sbjct: 3305 KILIVEDNEMNANIMFKMLAKLGIQCEPHLALNGLEGV-----------KKAKNEEYDLI 3353
Query: 1022 MMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
+MD +MPVM G AT LIRK E PI+A+TA AM G SK + AG D +L+KPLQ
Sbjct: 3354 IMDIQMPVMCGLTATSLIRKHEGT-KKRTPIVAITASAMNGEMSKALAAGCDDYLSKPLQ 3412
Query: 1082 KDKLLDVV 1089
L V+
Sbjct: 3413 LKDLRYVI 3420
>sp|Q86AT9|DHKI_DICDI Hybrid signal transduction histidine kinase I OS=Dictyostelium
discoideum GN=dhkI-1 PE=3 SV=1
Length = 1736
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 6/129 (4%)
Query: 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022
+K LV ED+ + K+ +L K G + ++GK+A D + + K++ YD I+
Sbjct: 1550 QKVLVAEDNTMNQKLIKTLLTKRGFDITIAKDGKQALDFYHE------SKNKSILYDCIL 1603
Query: 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQK 1082
MD +MP+++G EAT IR+ E HIPIIA+TAHAM G K +++G+D ++TKP+
Sbjct: 1604 MDIQMPILSGLEATCAIREIEANEGGHIPIIAVTAHAMKGDKEKFLESGVDDYVTKPINP 1663
Query: 1083 DKLLDVVKS 1091
L +V+ +
Sbjct: 1664 KLLYEVINT 1672
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 94/176 (53%), Gaps = 14/176 (7%)
Query: 355 SLGLFIIL--IAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAI 412
++G F+ L I + + E+ L NATE+A+R + K LA SH++ + + +I
Sbjct: 516 TIGAFVALHDITERKRNEVIL-------KNATEEAQRANQLKGEFLANISHELLSPMNSI 568
Query: 413 IGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQ 472
IG+V LC + A +L E L + SK LL +L+ +++ + +E+ + + F L
Sbjct: 569 IGMVGLCLDVA--PRNLKEMLNDVVESSKILLDLLHQILDFTTLESNSLAVRPFPFKLRD 626
Query: 473 LLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKF 528
++ ++Y I+K + + D ++ + GD+ +LKQIL NL+ N++KF
Sbjct: 627 TFNQLFKVFYTRIIEKKISLTFS-IDPNIADDFY--GDQNRLKQILSNLIDNAIKF 679
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 587 LLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIA 646
+ +F + D G G+P+DK + IF+ F QV + Q G+GLGL I + ++ G A
Sbjct: 830 FVNLKFSIKDRGIGVPEDKHDFIFDRFFQVDGSYSRVQGGVGLGLSICKKLIEFFGG--A 887
Query: 647 IADKEPGERGVCFRFNVLLTAV 668
I + +G F F + + +V
Sbjct: 888 IWFESEASQGSTFHFILSIKSV 909
>sp|Q9M7M1|ETR1_PRUPE Ethylene receptor OS=Prunus persica GN=ETR1 PE=2 SV=1
Length = 738
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 124/273 (45%), Gaps = 31/273 (11%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE-DANPGTDLAENLGLIRTCSK 441
A +AE + LA +H++R + AII L L E + P L + I S
Sbjct: 333 ARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLM--VETILKSSH 390
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
L ++N V+++S++E G ++L FNL + EV ++ V K + V L+
Sbjct: 391 LLATLINDVLDLSRLEDGSLQLEIATFNLHSVFREVHNLIKPVASVKKLSVSLNLAADLP 450
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+ + GD +L QI+ N+V N++KF+ EG IS+ A V K +D
Sbjct: 451 VQAV---GDEKRLMQIVLNVVGNAVKFSKEGSISITAFVAKSESLRD------------- 494
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
FR E F ++ N +V D+G GI +F +F Q + A
Sbjct: 495 ----FRAPEFFP--------AQSDNHFYLRVQVKDSGSGINPQDIPKLFTKFAQTQSLAT 542
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE 654
+ G GLGL I + V+LM+G I I + PG+
Sbjct: 543 RNSGGSGLGLAICKRFVNLMEGHIWIESEGPGK 575
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G K LV++D+ VT +L LG + E F HV + +E K +
Sbjct: 613 GLKVLVMDDNG---SVTKGLLVHLGCDVTTVSSIDE-FLHV------ISQEHKV-----V 657
Query: 1022 MMDCEMPVMNGWE-ATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
MD MP ++G+E A R+ K ++++ + ++ALT + + GMD + KP+
Sbjct: 658 FMDVCMPGIDGYELAVRIHEKFTKRHERPV-LVALTGNIDKMTKENCMRVGMDGVILKPV 716
Query: 1081 QKDKLLDVVKSIDE 1094
DK+ V+ + E
Sbjct: 717 SVDKMRSVLSELLE 730
>sp|P0C0F7|RPFC_XANC8 Sensory/regulatory protein RpfC OS=Xanthomonas campestris pv.
campestris (strain 8004) GN=rpfC PE=3 SV=2
Length = 726
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 131/314 (41%), Gaps = 57/314 (18%)
Query: 354 ISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAII 413
+S GL + LIA ++ + L A +A + K+ LA SH+ R L +
Sbjct: 153 LSWGLLLGLIAVP----LYFDSLLRAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLS 208
Query: 414 GLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473
G+ E+ + E L I+ ++ LL ++ V+++S IEAGK+ + +F+L ++
Sbjct: 209 GMTEVL-ATTRLDAEQKECLNTIQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREM 267
Query: 474 LEEVVDMYYHVG----IKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT 529
+ V + ++ G V D D ++GD L+Q+L NLV N++KFT
Sbjct: 268 IGSVNLILQPQARGRRLEYGTQVADDVPD-------LLKGDTAHLRQVLLNLVGNAVKFT 320
Query: 530 SEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQ 589
GH+ +R S + + +
Sbjct: 321 EHGHVLLRVTRVSGSAEDAV---------------------------------------R 341
Query: 590 FEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIAD 649
F+V+DTG G+P D + +FE F Q EG GLG I + +V M G I +
Sbjct: 342 LRFDVEDTGIGVPMDMRPRLFEAFEQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIGFKE 401
Query: 650 KEPGERGVCFRFNV 663
+P G F F +
Sbjct: 402 NQPS--GSVFWFEL 413
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV +D V +L K G K +C NG E ++L + +E YD +++
Sbjct: 463 RMLVADDHEANRMVLQRLLEKAGHKV-LCVNGAE------QVLDAMAEE----DYDAVIV 511
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP MNG + + +R + + P++ L+A AG L KP+
Sbjct: 512 DLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVLAA 571
Query: 1084 KLLDVVKSI 1092
KLLD + +
Sbjct: 572 KLLDTLADL 580
>sp|P0C0F6|RPFC_XANCP Sensory/regulatory protein RpfC OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rpfC PE=1 SV=2
Length = 726
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 131/314 (41%), Gaps = 57/314 (18%)
Query: 354 ISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAII 413
+S GL + LIA ++ + L A +A + K+ LA SH+ R L +
Sbjct: 153 LSWGLLLGLIAVP----LYFDSLLRAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLS 208
Query: 414 GLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473
G+ E+ + E L I+ ++ LL ++ V+++S IEAGK+ + +F+L ++
Sbjct: 209 GMTEVL-ATTRLDAEQKECLNTIQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREM 267
Query: 474 LEEVVDMYYHVG----IKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT 529
+ V + ++ G V D D ++GD L+Q+L NLV N++KFT
Sbjct: 268 IGSVNLILQPQARGRRLEYGTQVADDVPD-------LLKGDTAHLRQVLLNLVGNAVKFT 320
Query: 530 SEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQ 589
GH+ +R S + + +
Sbjct: 321 EHGHVLLRVTRVSGSAEDAV---------------------------------------R 341
Query: 590 FEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIAD 649
F+V+DTG G+P D + +FE F Q EG GLG I + +V M G I +
Sbjct: 342 LRFDVEDTGIGVPMDMRPRLFEAFEQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIGFKE 401
Query: 650 KEPGERGVCFRFNV 663
+P G F F +
Sbjct: 402 NQPS--GSVFWFEL 413
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ LV +D V +L K G K +C NG E ++L + +E YD +++
Sbjct: 463 RMLVADDHEANRMVLQRLLEKAGHKV-LCVNGAE------QVLDAMAEE----DYDAVIV 511
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D MP MNG + + +R + + P++ L+A AG L KP+
Sbjct: 512 DLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAA 571
Query: 1084 KLLDVVKSI 1092
KLLD + +
Sbjct: 572 KLLDTLADL 580
>sp|P58356|TORS_ECO57 Sensor protein TorS OS=Escherichia coli O157:H7 GN=torS PE=3 SV=1
Length = 914
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 132/301 (43%), Gaps = 59/301 (19%)
Query: 362 LIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE 421
L A+ R L +I+ A +AE+ S K+ LA SH++R L I+G +L +
Sbjct: 412 LAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD 471
Query: 422 DANPGTDLA-ENLGLIRTCSKDLLGILNSVMEMSKIEAG--KMELVEEEFNLAQLLEEVV 478
NP + ++L I + LL ILN +++ S IEAG + + +E F LLE +
Sbjct: 472 --NPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTL 529
Query: 479 DMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRA 538
+ G KG + L + + + GD +++Q++ NL+SN+++FT EG I +R+
Sbjct: 530 QLMS--GRVKGRPIRLATAIADDVPTA-LMGDPRRIRQVITNLLSNALRFTDEGQIVLRS 586
Query: 539 AVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTG 598
+ Q+ EV+D+G
Sbjct: 587 RTDGE---------------------------------------------QWLVEVEDSG 601
Query: 599 KGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVC 658
GI K IF+ F+QV G + G GLGL I + M GE++ A P E G C
Sbjct: 602 CGIDPAKLAEIFQPFIQVS----GKRGGTGLGLTISSRLAQAMGGELS-ATSTP-EVGSC 655
Query: 659 F 659
F
Sbjct: 656 F 656
>sp|Q551X9|DHKF_DICDI Hybrid signal transduction histidine kinase F OS=Dictyostelium
discoideum GN=dhkF PE=3 SV=1
Length = 1109
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 120/277 (43%), Gaps = 51/277 (18%)
Query: 381 MNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCS 440
M A + A + K+ LA SH++R L II + E+ + T+ + I S
Sbjct: 305 MEARDLALTATKIKSQFLATISHEIRTPLNGIITMGEMLLSTSPLNTEQHDIAETIFGSS 364
Query: 441 KDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGS 500
+ LL I + +++ SKIEA K+EL EF+ LE +G GV + P + +
Sbjct: 365 ELLLSITSDILDFSKIEASKLELEMIEFDFIGCLE-------GIGKTIGVSITNKPIEIA 417
Query: 501 VLGSCHVR----GDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
L + GD +L QI+ N+ +N++K+T GHI R +V
Sbjct: 418 FLMDTDIPHRLIGDPNRLIQIMLNMGTNAVKYTDRGHIVFRISV---------------- 461
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
+ R N + + +DD+G GI +D++ +FE F Q+
Sbjct: 462 ------------------------ISREQNRCKIKISIDDSGIGIGEDQRAHLFEPFHQI 497
Query: 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
++ G GLGL I + LM GE+ + +PG
Sbjct: 498 DSSSTRKYGGSGLGLAISSKLAKLMGGEVILERSKPG 534
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 13/129 (10%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+V+D+A+ KV L KLG + NG E F+ ++K+ Y+ I M
Sbjct: 928 RILLVDDNAVNRKVVKLQLKKLGYDCDTATNGFEGFE--------MQKKDN---YELIFM 976
Query: 1024 DCEMPVMNGWEATRLIRKEEE--QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ 1081
D MP+ +G A++LIR EE Y I+ L+A + G V GMD + KPL+
Sbjct: 977 DLNMPLCDGSMASKLIRSHEELNNYKSRANIVGLSATYLHGSKDYCVSMGMDDFVVKPLK 1036
Query: 1082 KDKLLDVVK 1090
L ++VK
Sbjct: 1037 LQPLGELVK 1045
>sp|Q9HUI3|ARUS_PSEAE Sensor histidine kinase AruS OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=aruS PE=3
SV=1
Length = 998
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 121/289 (41%), Gaps = 54/289 (18%)
Query: 382 NATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSK 441
A +QAE K+ LA SH++R L I+G+ EL E A+ G + L + T +
Sbjct: 495 RAKDQAEAADRAKSRFLATMSHEIRTPLNGILGMAELLRE-ASLGERDRQRLRALATAGE 553
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG--VDVVLDPC-- 497
LL ILN V+ +++E +F+L LLE+V+ + + +D+ LDP
Sbjct: 554 GLLAILNEVLHFARLEEAPDVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVH 613
Query: 498 DGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVI 557
DG RG L+Q+L NL+ N++KFT G + VR
Sbjct: 614 DGH-------RGAEQFLRQVLTNLLGNAVKFTEAGEVRVR-------------------- 646
Query: 558 SKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617
+ + R+ + V D G GIP++ + IFE F Q
Sbjct: 647 --------------------VERLARSAGSERLRLSVADDGIGIPEEMRERIFERFTQGG 686
Query: 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666
+ G GLGL I + +V + G I + + +G F F + L
Sbjct: 687 DAVTRRYGGTGLGLAISKRLVEALGGRIGVESRV--GQGSTFWFEIELA 733
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023
+ L+VED A+ +V +L + G + + + A +C+ +D I++
Sbjct: 751 EVLLVEDVALNREVAQGLLERDGHRVMLAEDAGPAL-ALCRQRR----------FDLILL 799
Query: 1024 DCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083
D +P M G E IR++ + + PI A TA + + AGM L KPL+ D
Sbjct: 800 DMHLPGMAGLELCAGIRRQLDGLNRATPIFAFTASIQPDMVRRYFAAGMQGVLGKPLRMD 859
Query: 1084 KL 1085
+L
Sbjct: 860 EL 861
>sp|Q9XH57|ETR2_PELHO Ethylene receptor 2 OS=Pelargonium hortorum GN=ETR2 PE=2 SV=1
Length = 741
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 136/290 (46%), Gaps = 49/290 (16%)
Query: 377 LIKQMNATEQAERKSMNKTFA----LAKASHDVRASLAAIIGLVELCHEDANPGTDLA-E 431
L++Q A + A R++ A LA +H++R + AII L L E T+L E
Sbjct: 323 LMEQNVALDMARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQE-----TELTPE 377
Query: 432 NLGLIRTCSKD---LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVG-IK 487
++ T K L ++N V+++S++E G ++L FNL LL EV ++ + +K
Sbjct: 378 QRLMVETVLKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHALLREVHNLIKPIASVK 437
Query: 488 K---GVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544
K ++V D + +V GD +L QI+ N+V N++KF+ EG+IS+ A V K
Sbjct: 438 KLCISLNVATDLPEYAV-------GDEKRLVQIILNVVGNAVKFSKEGNISITAFVAKSE 490
Query: 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKD 604
+D A + I C F+ +V D+G GI
Sbjct: 491 SLRDPRAPDFFPI--CGENQFY-----------------------LRVQVKDSGLGINPQ 525
Query: 605 KQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE 654
+F +F Q + A + G GLGL I + V+LM+G I I + PG+
Sbjct: 526 DIPRLFTKFAQTQPVATKNSGGSGLGLAICKRFVNLMEGHIWIDSEGPGK 575
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
+G K L+++D+ + VT +L LG + D + +++S Y
Sbjct: 611 FSGLKVLLLDDNGVSRAVTRGLLAHLGCDVTTVSSS----DELLRVVSQ--------DYK 658
Query: 1020 YIMMDCEMPVMNGWE-ATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
+ MD MP ++G+E A R+ K +++ + I+ALT + GM+ + K
Sbjct: 659 VVFMDVCMPEVDGFEIAVRIHEKFMTRHERPL-IVALTGNIDQVTKDNCTRVGMEGVVLK 717
Query: 1079 PLQKDKLLDVVKSIDE 1094
P+ DK+ +V+ ++ E
Sbjct: 718 PVSIDKMRNVLSNLLE 733
>sp|Q9XH58|ETR1_PELHO Ethylene receptor 1 OS=Pelargonium hortorum GN=ETR1 PE=2 SV=1
Length = 740
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 134/297 (45%), Gaps = 42/297 (14%)
Query: 377 LIKQMNATEQAERKSMNKTFA----LAKASHDVRASLAAIIGLVELCHEDANPGTDL-AE 431
L++Q A + A R++ A LA +H++R + AII L L E TDL +E
Sbjct: 323 LMEQNVALDMARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQE-----TDLTSE 377
Query: 432 NLGLIRTCSKD---LLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKK 488
++ T K L ++N V+++S++E G ++L FNL + +V ++ + K
Sbjct: 378 QRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIATFNLHAVFRQVFNLIKPIASVK 437
Query: 489 GVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQD 548
+ + L+ +V GD +L QI+ N+V N++KF+ EG ISV A V K +D
Sbjct: 438 KLFITLNVSPDL---PEYVIGDEKRLVQIMLNVVGNAVKFSKEGIISVTAFVAKSESVRD 494
Query: 549 IIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNS 608
A + +S + N +V D+G GI
Sbjct: 495 PRAPDFFPVS-------------------------SDNQFYMRVQVKDSGSGINPQDMPK 529
Query: 609 IFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665
+F +F Q + A + G GLGL I + V+LM G I I D E +G F V L
Sbjct: 530 LFTKFAQSQPVATKNSGGSGLGLAISKRFVNLMDGHIWI-DSEGPSKGCTVTFVVKL 585
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 14/140 (10%)
Query: 956 SEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA 1015
S+ G K L+++++ I VT +L LG + +E V +
Sbjct: 607 SQTDFPGLKVLLMDENGISRMVTKGLLMHLGCDVTSVSSSEECLRMVSQ----------- 655
Query: 1016 LPYDYIMMDCEMPVMNGWE-ATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDF 1074
+ + MD +P ++G E A R+ K ++++ + I+ALT++A + GM+
Sbjct: 656 -DHKVVFMDVRVPGLDGHELAVRIHEKFMKRHERPL-IVALTSNADKVTKENCLRVGMEG 713
Query: 1075 HLTKPLQKDKLLDVVKSIDE 1094
+ KP+ DK+ +V+ + E
Sbjct: 714 VILKPVSVDKMRNVLSKLLE 733
>sp|P14376|RCSC_ECOLI Sensor kinase protein RcsC OS=Escherichia coli (strain K12) GN=rcsC
PE=1 SV=3
Length = 949
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 128/274 (46%), Gaps = 60/274 (21%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP-GTDLAENLGLIRTCSKDL 443
+ AE+ S +K+ LA SH++R L IIG ++L P G D + + S L
Sbjct: 461 QAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD--RLVTAMNNSSSLL 518
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKK--GVDVVLDPCDGSV 501
L I++ +++ SKIE+ ++++ EF+ +++ + Y + ++K G+ ++P D V
Sbjct: 519 LKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEP-DVPV 577
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHI--SVRAAVKKKSFKQDIIASNRNVISK 559
+ GD ++L+Q++ NL+SN++KFT G I VRA
Sbjct: 578 ----ALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRA--------------------- 612
Query: 560 CLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619
D D L V DTG GIP + +F+ F QV
Sbjct: 613 --------------DGDYL------------SIRVRDTGVGIPAKEVVRLFDPFFQVGTG 646
Query: 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
+ +G GLGL I + ++ +M G+I++ D EPG
Sbjct: 647 VQRNFQGTGLGLAICEKLISMMDGDISV-DSEPG 679
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 19/126 (15%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LVV+D I ++ + LG LG + + +G +A + + K D+ ++ D
Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDI-----------VLSD 875
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
MP M+G+ T+ IR Q + +P+I +TA+A+A + +++GMD L+KP+
Sbjct: 876 VNMPNMDGYRLTQRIR----QLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVT--- 928
Query: 1085 LLDVVK 1090
LDV+K
Sbjct: 929 -LDVIK 933
>sp|O81122|ETR1_MALDO Ethylene receptor OS=Malus domestica GN=ETR1 PE=2 SV=1
Length = 741
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 127/276 (46%), Gaps = 37/276 (13%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL-AENLGLIRTC-- 439
A +AE + LA +H++R + AII L L E T+L AE ++ T
Sbjct: 333 ARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQE-----TELTAEQRLMVETILR 387
Query: 440 SKDLLG-ILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCD 498
S +LL ++N V+++S++E G ++L FNL + EV +M V K + V L+
Sbjct: 388 SSNLLATLINDVLDLSRLEDGSLQLEIATFNLHSVFREVHNMIKPVASIKRLSVTLNIAA 447
Query: 499 GSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVIS 558
+ + GD +L Q + N+V N++KF+ EG IS+ A V K +D
Sbjct: 448 DLPMYAI---GDEKRLMQTILNVVGNAVKFSKEGSISITAFVAKSESLRD---------- 494
Query: 559 KCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618
FR + F ++ N +V D+G GI +F +F Q +
Sbjct: 495 -------FRAPDFFP--------VQSDNHFYLRVQVKDSGSGINPQDIPKLFTKFAQTQA 539
Query: 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE 654
A + G GLGL I + V+LM+G I I + G+
Sbjct: 540 LATRNSGGSGLGLAICKRFVNLMEGHIWIESEGLGK 575
Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI 1021
G K LV++D+ + VT +L LG A + ++L + +E K +
Sbjct: 613 GLKVLVMDDNGVSRSVTKGLLAHLGCDVT-------AVSLIDELLHVISQEHKV-----V 660
Query: 1022 MMDCEMPVMNGWE-ATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL 1080
MD MP ++G+E A R+ K ++++ + ++ALT + G+D + KP+
Sbjct: 661 FMDVSMPGIDGYELAVRIHEKFTKRHERPV-LVALTGSIDKITKENCMRVGVDGVILKPV 719
Query: 1081 QKDKLLDVVKSIDE 1094
DK+ V+ + E
Sbjct: 720 SVDKMRSVLSELLE 733
>sp|P49333|ETR1_ARATH Ethylene receptor 1 OS=Arabidopsis thaliana GN=ETR1 PE=1 SV=1
Length = 738
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 136/318 (42%), Gaps = 41/318 (12%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE-DANPGTDLAENLGLIRTCSK 441
A +AE + LA +H++R + AII L L E + P L + I S
Sbjct: 333 ARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLM--VETILKSSN 390
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
L ++N V+++S++E G ++L FNL L EV+++ + + K + + L+
Sbjct: 391 LLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIKPIAVVKKLPITLNLAPDL- 449
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
V GD +L QI+ N+V N++KF+ +G ISV A V K D A++ V+
Sbjct: 450 --PEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVT----KSDTRAADFFVVPTG- 502
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
S + R K V D+G GI IF +F Q + A
Sbjct: 503 SHFYLRVK------------------------VKDSGAGINPQDIPKIFTKFAQTQSLAT 538
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDP 681
G GLGL I + V+LM+G I I G +G F+V L + ER P
Sbjct: 539 RSSGGSGLGLAISKRFVNLMEGNIWIESDGLG-KGCTAIFDVKL-GISERSNESKQSGIP 596
Query: 682 RTHNDWPQTGLHQHFASF 699
+ P H +F
Sbjct: 597 KV----PAIPRHSNFTGL 610
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD 1019
G K LV++++ + VT +L LG + + +E +++S K
Sbjct: 607 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECL----RVVSHEHK-------- 654
Query: 1020 YIMMDCEMPVMNGWE-ATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078
+ MD MP + ++ A R+ K +Q ++AL+ + K + G+D L K
Sbjct: 655 VVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLK 714
Query: 1079 PLQKDKLLDVVKSIDE 1094
P+ D + DV+ + E
Sbjct: 715 PVSLDNIRDVLSDLLE 730
>sp|Q56128|RCSC_SALTI Sensor protein RcsC OS=Salmonella typhi GN=rcsC PE=3 SV=2
Length = 948
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 128/272 (47%), Gaps = 56/272 (20%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP-GTDLAENLGLIRTCSKDL 443
+ AE+ S +K+ LA SH++R L IIG ++L P G D + + S L
Sbjct: 461 QAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVD--RLVTAMNNSSSLL 518
Query: 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKK--GVDVVLDPCDGSV 501
L I++ +++ SKIE+ ++++ EF+ +++ + Y + ++K G+ ++P D V
Sbjct: 519 LKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEP-DVPV 577
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+ GD ++L+Q++ NL+SN++KFT G I + +C
Sbjct: 578 ----SLNGDPMRLQQVISNLLSNAIKFTDIGCIVLHV--------------------RC- 612
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621
D D L V DTG GIP + +F+ F QV
Sbjct: 613 ------------DGDYL------------SIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQ 648
Query: 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
+ +G GLGL I + ++ +M G+I++ D EPG
Sbjct: 649 RNFQGTGLGLAICEKLISMMDGDISV-DSEPG 679
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LVV+D I ++ + LG LG + + +G +A + + K D+ ++ D
Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDI-----------VLSD 875
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
MP M+G+ T+ IR Q + +P++ +TA+A+A + +++GMD L+KP+ D
Sbjct: 876 VNMPNMDGYRLTQRIR----QLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDA 931
Query: 1085 LLDVVKSIDETMEK 1098
L + E + K
Sbjct: 932 LKQTLAVYAERVRK 945
>sp|Q41342|ETR1_SOLLC Ethylene receptor 1 OS=Solanum lycopersicum GN=ETR1 PE=1 SV=1
Length = 754
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 124/274 (45%), Gaps = 33/274 (12%)
Query: 383 ATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHE-DANPGTDLAENLGLIRTCSK 441
A +AE + LA +H++R + AII L L E D P L + I S
Sbjct: 347 ARREAEMAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETDLTPEQRLM--VETILKSSN 404
Query: 442 DLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSV 501
L ++N V+++S++E G ++L FNL L EV + + K + V L
Sbjct: 405 LLATLINDVLDLSRLEDGSLQLDIGTFNLHALFREVHSLIKPIASVKKLFVTLSLSSDL- 463
Query: 502 LGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561
+V GD +L QIL N+V N++KF+ EG++S+ A V K +D A
Sbjct: 464 --PEYVIGDEKRLMQILLNVVGNAVKFSKEGNVSISAFVAKSDSLRDPRAPE-------- 513
Query: 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGI-PKDKQNSIFEEFVQVKETA 620
FF + N ++ DTG GI P+D N +F +F Q + A
Sbjct: 514 ---FFAVP--------------SENHFYLRVQIKDTGIGITPQDIPN-LFSKFTQSQALA 555
Query: 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE 654
+ G GLGL I + V+LM+G I I + G+
Sbjct: 556 TTNSGGTGLGLAICKRFVNLMEGHIWIESEGLGK 589
>sp|P58662|RCSC_SALTY Sensor protein RcsC OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=rcsC PE=3 SV=1
Length = 948
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 127/271 (46%), Gaps = 54/271 (19%)
Query: 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLL 444
+ AE+ S +K+ LA SH++R L IIG ++L P + + + S LL
Sbjct: 461 QAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP-KGVERLVTAMNNSSSLLL 519
Query: 445 GILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKK--GVDVVLDPCDGSVL 502
I++ +++ SKIE+ ++++ EF+ +++ + Y + ++K G+ ++P D V
Sbjct: 520 KIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEP-DVPV- 577
Query: 503 GSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLS 562
+ GD ++L+Q++ NL+SN++KFT G I + +C
Sbjct: 578 ---SLNGDPMRLQQVISNLLSNAIKFTDIGCIVLHV--------------------RC-- 612
Query: 563 KLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622
D D L V DTG GIP + +F+ F QV
Sbjct: 613 -----------DGDYL------------SIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQR 649
Query: 623 HQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653
+ +G GLGL I + ++ +M G+I++ D EPG
Sbjct: 650 NFQGTGLGLAICEKLISMMDGDISV-DSEPG 679
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024
LVV+D I ++ + LG LG + + +G +A + + K D+ ++ D
Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDI-----------VLSD 875
Query: 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK 1084
MP M+G+ T+ IR Q + +P++ +TA+A+A + +++GMD L+KP+ D
Sbjct: 876 VNMPNMDGYRLTQRIR----QLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDV 931
Query: 1085 LLDVVKSIDETMEK 1098
L + E + K
Sbjct: 932 LKQTLAVYAERVRK 945
>sp|P58402|EVGS_ECO57 Sensor protein EvgS OS=Escherichia coli O157:H7 GN=evgS PE=3 SV=1
Length = 1197
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 138/308 (44%), Gaps = 53/308 (17%)
Query: 381 MNATEQAERKSMNKTFA----LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLI 436
++A E K++N T A LA SH++R +++I+G +EL E + L
Sbjct: 695 IHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLA 754
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
+ LLG++ ++++ KIE+G +L + ++ L++ + + K + +
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIAL---S 811
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
C + V+ D KQ+L NL+SN++KFT+EG + + ++
Sbjct: 812 CSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVH-------------- 857
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
+D H+V + + D+G G+ +++Q +F+ + Q
Sbjct: 858 ------------------IDDNHAV--------IKMTIMDSGSGLSQEEQQQLFKRYSQ- 890
Query: 617 KETALGHQE-GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPD 675
T+ G Q+ G GLGL I + ++ M+G++++ + PG G F + + + + +
Sbjct: 891 --TSAGRQQTGSGLGLMICKELIKNMQGDLSL-ESHPG-IGTTFTITIPVEIIQQVAAVE 946
Query: 676 TDEEDPRT 683
E P T
Sbjct: 947 AKAEQPIT 954
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
YD ++ D MP ++G+E TR +R++ +PI LTA+A A K ++ GM+ L
Sbjct: 1003 YDLLITDVNMPNVDGFELTRKLREQNSS----LPIWGLTANAQANEREKGLNCGMNLCLF 1058
Query: 1078 KPLQKDKLLDVVKS 1091
KPL LDV+K+
Sbjct: 1059 KPLT----LDVLKT 1068
>sp|Q52969|Y1002_RHIME Uncharacterized sensor-like histidine kinase R01002 OS=Rhizobium
meliloti (strain 1021) GN=R01002 PE=3 SV=2
Length = 525
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 114/263 (43%), Gaps = 55/263 (20%)
Query: 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTD---LAENLGLIRTCSKDLLGILNSV 450
KT LA SH++R L AI+G ++ + + E + LI LL ++N++
Sbjct: 240 KTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYVSLIHQSGTHLLSVVNTM 299
Query: 451 MEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSC-HVRG 509
++MSKIEAG+ EL+ E F +A+ + M H +KGV + V S +
Sbjct: 300 LDMSKIEAGRYELLLEPFRVAEAIAACEAMLSHQAREKGVRLT-----SRVTRSVGEINA 354
Query: 510 DRVKLKQILCNLVSNSMKFTSEGH-ISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRN 568
D+ +QIL NL+ N++KFT G ++V AA++ K
Sbjct: 355 DQRAFQQILINLIGNAIKFTDRGGLVTVDAALEGNMLK---------------------- 392
Query: 569 KEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLG 628
V DTG GI DK + + FVQ++ EG G
Sbjct: 393 -----------------------LTVSDTGIGIAADKLQMLGQPFVQIQNDYTRRYEGTG 429
Query: 629 LGLGIVQSMVHLMKGEIAIADKE 651
LGL +V+ + L G+++I E
Sbjct: 430 LGLSLVKGLAELHGGDVSIRSAE 452
>sp|P30855|EVGS_ECOLI Sensor protein EvgS OS=Escherichia coli (strain K12) GN=evgS PE=1
SV=2
Length = 1197
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 131/288 (45%), Gaps = 53/288 (18%)
Query: 381 MNATEQAERKSMNKTFA----LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLI 436
+NA E + K++ T A LA SH++R +++I+G +EL E + L
Sbjct: 695 INALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLA 754
Query: 437 RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDP 496
+ LLG++ ++++ KIE+G +L + ++ L++ + + K + +
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIAL---S 811
Query: 497 CDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNV 556
C + V+ D KQ+L NL+SN++KFT+EG + + ++
Sbjct: 812 CSSTFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGH-------------- 857
Query: 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616
+D H+V + + D+G G+ +++Q +F+ + Q
Sbjct: 858 ------------------IDDNHAV--------IKMTIMDSGSGLSQEEQQQLFKRYSQ- 890
Query: 617 KETALGHQE-GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663
T+ G Q+ G GLGL I + ++ M+G++++ + PG G F +
Sbjct: 891 --TSAGRQQTGSGLGLMICKELIKNMQGDLSL-ESHPG-IGTTFTITI 934
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 1018 YDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077
YD ++ D MP M+G+E TR +R++ +PI LTA+A A K + GM+ L
Sbjct: 1003 YDLLITDVNMPNMDGFELTRKLREQNSS----LPIWGLTANAQANEREKGLSCGMNLCLF 1058
Query: 1078 KPLQKDKLLDVVKS 1091
KPL LDV+K+
Sbjct: 1059 KPLT----LDVLKT 1068
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,514,628
Number of Sequences: 539616
Number of extensions: 16542879
Number of successful extensions: 43992
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 512
Number of HSP's that attempted gapping in prelim test: 43013
Number of HSP's gapped (non-prelim): 1025
length of query: 1099
length of database: 191,569,459
effective HSP length: 128
effective length of query: 971
effective length of database: 122,498,611
effective search space: 118946151281
effective search space used: 118946151281
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)