Query 001330
Match_columns 1099
No_of_seqs 665 out of 5197
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 22:00:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10841 hybrid sensory kinase 100.0 2.2E-54 4.8E-59 553.1 72.7 484 385-1097 438-921 (924)
2 PRK11107 hybrid sensory histid 100.0 1.4E-54 3E-59 562.0 68.6 500 386-1095 285-787 (919)
3 PRK15347 two component system 100.0 1.6E-53 3.4E-58 552.4 71.8 423 385-1094 389-811 (921)
4 TIGR02956 TMAO_torS TMAO reduc 100.0 7.4E-50 1.6E-54 520.7 54.8 368 385-1094 455-822 (968)
5 PRK11091 aerobic respiration c 100.0 2.8E-49 6.1E-54 503.5 46.7 366 388-1094 277-644 (779)
6 PRK11466 hybrid sensory histid 100.0 1.1E-47 2.4E-52 497.4 54.3 362 387-1095 437-800 (914)
7 PRK09959 hybrid sensory histid 100.0 1.9E-44 4E-49 479.4 49.0 373 385-1094 703-1075(1197)
8 PRK10618 phosphotransfer inter 100.0 1.1E-41 2.4E-46 430.4 44.3 233 385-666 441-673 (894)
9 PRK13837 two-component VirA-li 100.0 2.1E-40 4.6E-45 423.3 50.9 365 393-1095 449-814 (828)
10 COG5002 VicK Signal transducti 100.0 1.1E-41 2.4E-46 364.8 17.8 225 392-667 223-450 (459)
11 KOG0519 Sensory transduction h 100.0 2.8E-41 6.1E-46 421.7 19.7 586 366-1094 191-785 (786)
12 COG2205 KdpD Osmosensitive K+ 100.0 2E-37 4.3E-42 365.3 32.8 223 390-667 656-881 (890)
13 PRK13557 histidine kinase; Pro 100.0 4.3E-34 9.4E-39 348.0 44.2 366 395-1095 164-535 (540)
14 PRK09303 adaptive-response sen 100.0 2.6E-34 5.7E-39 335.9 31.7 230 384-665 141-377 (380)
15 TIGR03785 marine_sort_HK prote 100.0 9.2E-32 2E-36 336.2 44.6 220 392-664 483-703 (703)
16 PRK10604 sensor protein RstB; 100.0 1.4E-31 3.1E-36 318.3 36.6 218 390-667 208-425 (433)
17 PRK11006 phoR phosphate regulo 100.0 4.8E-32 1E-36 322.2 28.3 221 394-667 204-425 (430)
18 COG4191 Signal transduction hi 100.0 1.7E-30 3.6E-35 299.3 38.3 208 398-665 388-601 (603)
19 PRK09835 sensor kinase CusS; P 100.0 3.5E-30 7.5E-35 309.9 43.1 221 391-665 259-480 (482)
20 PRK10364 sensor protein ZraS; 100.0 4.1E-30 8.9E-35 308.0 39.4 212 394-666 237-449 (457)
21 PRK10815 sensor protein PhoQ; 100.0 4.2E-30 9.2E-35 309.3 37.9 215 393-666 265-479 (485)
22 PRK10549 signal transduction h 100.0 1.4E-29 3.1E-34 303.4 38.8 224 390-667 236-460 (466)
23 PRK09470 cpxA two-component se 100.0 4.7E-29 1E-33 298.2 39.7 218 392-666 241-458 (461)
24 TIGR01386 cztS_silS_copS heavy 100.0 1.7E-29 3.8E-34 301.2 35.4 216 394-664 241-457 (457)
25 PRK10337 sensor protein QseC; 100.0 4.8E-29 1E-33 297.7 39.1 213 392-662 235-448 (449)
26 PRK10490 sensor protein KdpD; 100.0 1.1E-29 2.4E-34 324.5 31.8 220 392-666 662-883 (895)
27 PRK10755 sensor protein BasS/P 100.0 5.9E-29 1.3E-33 288.1 33.9 214 393-666 136-351 (356)
28 TIGR02938 nifL_nitrog nitrogen 100.0 4.5E-29 9.8E-34 299.5 30.1 213 395-665 277-494 (494)
29 PRK09467 envZ osmolarity senso 100.0 1.7E-27 3.7E-32 283.0 34.5 228 370-666 207-434 (435)
30 PRK11100 sensory histidine kin 100.0 1.4E-26 3.1E-31 277.4 39.8 218 394-666 256-474 (475)
31 TIGR02966 phoR_proteo phosphat 100.0 4.2E-27 9.1E-32 267.6 27.2 217 395-663 115-333 (333)
32 COG3852 NtrB Signal transducti 100.0 4.2E-27 9.1E-32 250.6 23.0 219 395-667 133-356 (363)
33 COG4251 Bacteriophytochrome (l 99.9 2.3E-26 4.9E-31 263.8 24.1 225 385-667 515-743 (750)
34 PRK11073 glnL nitrogen regulat 99.9 6.4E-26 1.4E-30 261.5 26.9 216 394-665 130-347 (348)
35 COG0642 BaeS Signal transducti 99.9 3.1E-24 6.7E-29 241.6 29.6 216 394-667 115-331 (336)
36 PRK11360 sensory histidine kin 99.9 1.8E-24 4E-29 266.0 29.1 212 394-666 390-602 (607)
37 TIGR02916 PEP_his_kin putative 99.9 5.5E-24 1.2E-28 267.0 25.7 202 395-664 476-679 (679)
38 PRK11086 sensory histidine kin 99.9 1.1E-21 2.4E-26 239.6 36.9 193 395-666 340-536 (542)
39 PRK13560 hypothetical protein; 99.9 1.1E-22 2.5E-27 259.9 24.7 210 380-666 591-804 (807)
40 PRK11644 sensory histidine kin 99.9 6.6E-21 1.4E-25 229.9 31.5 194 393-665 301-494 (495)
41 COG5000 NtrY Signal transducti 99.9 1.1E-21 2.4E-26 225.3 20.3 207 399-665 491-708 (712)
42 PRK15053 dpiB sensor histidine 99.9 7.1E-21 1.5E-25 233.2 26.8 195 397-666 341-540 (545)
43 COG4192 Signal transduction hi 99.8 2.3E-19 5E-24 198.9 26.6 207 398-664 455-665 (673)
44 COG0745 OmpR Response regulato 99.8 1.2E-19 2.7E-24 196.3 16.3 119 963-1096 1-119 (229)
45 PRK13559 hypothetical protein; 99.8 7.2E-18 1.6E-22 195.7 22.3 185 394-666 170-360 (361)
46 PF02518 HATPase_c: Histidine 99.8 1.8E-18 3.9E-23 166.1 11.6 109 509-665 1-110 (111)
47 COG3290 CitA Signal transducti 99.8 2.2E-15 4.7E-20 174.3 35.2 194 397-667 336-533 (537)
48 PRK10935 nitrate/nitrite senso 99.7 3.5E-16 7.6E-21 192.6 25.5 193 398-667 364-561 (565)
49 COG4753 Response regulator con 99.7 8.8E-17 1.9E-21 186.0 14.1 121 963-1098 2-125 (475)
50 COG2204 AtoC Response regulato 99.7 2.6E-16 5.7E-21 182.6 16.8 120 963-1097 5-124 (464)
51 COG3437 Response regulator con 99.7 3.3E-16 7.1E-21 172.7 13.9 124 961-1096 13-136 (360)
52 PRK10600 nitrate/nitrite senso 99.7 1.1E-14 2.5E-19 179.5 27.8 184 405-666 373-557 (569)
53 COG4566 TtrR Response regulato 99.7 1E-15 2.3E-20 154.3 13.9 119 963-1096 5-123 (202)
54 PF00072 Response_reg: Respons 99.7 2.1E-15 4.5E-20 144.2 15.1 111 965-1090 1-112 (112)
55 COG0784 CheY FOG: CheY-like re 99.6 1.1E-14 2.4E-19 142.9 16.8 120 961-1095 4-126 (130)
56 COG4565 CitB Response regulato 99.6 5.2E-15 1.1E-19 152.2 14.3 119 964-1097 2-122 (224)
57 COG3706 PleD Response regulato 99.6 1.3E-14 2.9E-19 167.3 16.9 124 961-1097 131-254 (435)
58 PRK10547 chemotaxis protein Ch 99.6 1.4E-13 3.1E-18 168.6 24.6 146 468-667 343-525 (670)
59 COG2197 CitB Response regulato 99.6 4.5E-14 9.7E-19 151.6 16.3 115 964-1093 2-118 (211)
60 PRK09581 pleD response regulat 99.6 1.5E-13 3.2E-18 164.0 22.5 120 961-1094 154-273 (457)
61 PLN03029 type-a response regul 99.5 1.3E-13 2.8E-18 149.5 17.0 133 962-1096 8-149 (222)
62 PRK10046 dpiA two-component re 99.5 4.5E-13 9.8E-18 145.5 17.4 117 963-1094 5-123 (225)
63 PRK11173 two-component respons 99.5 6.1E-13 1.3E-17 144.9 17.2 117 963-1095 4-120 (237)
64 PRK10529 DNA-binding transcrip 99.5 8.6E-13 1.9E-17 142.1 17.2 117 963-1095 2-118 (225)
65 PRK10816 DNA-binding transcrip 99.5 8.6E-13 1.9E-17 142.0 16.8 117 964-1095 2-118 (223)
66 PRK09836 DNA-binding transcrip 99.5 1.3E-12 2.9E-17 140.9 17.2 117 964-1095 2-118 (227)
67 COG3947 Response regulator con 99.4 1.7E-13 3.7E-18 145.9 8.9 118 964-1098 2-119 (361)
68 PRK10766 DNA-binding transcrip 99.4 1.9E-12 4.2E-17 139.0 16.9 117 963-1095 3-119 (221)
69 PRK10643 DNA-binding transcrip 99.4 2.3E-12 5.1E-17 137.9 17.1 117 964-1095 2-118 (222)
70 PRK04184 DNA topoisomerase VI 99.4 4.6E-13 9.9E-18 158.9 12.5 117 507-666 30-153 (535)
71 PRK09468 ompR osmolarity respo 99.4 2.3E-12 5.1E-17 140.3 17.0 118 963-1095 6-123 (239)
72 PRK10161 transcriptional regul 99.4 2.8E-12 6E-17 138.7 17.0 120 963-1095 3-122 (229)
73 PRK13856 two-component respons 99.4 3.1E-12 6.8E-17 139.9 16.9 116 964-1095 3-119 (241)
74 TIGR02154 PhoB phosphate regul 99.4 3.3E-12 7.1E-17 136.9 16.7 120 963-1095 3-122 (226)
75 PRK10430 DNA-binding transcrip 99.4 4E-12 8.6E-17 139.4 17.3 117 964-1093 3-121 (239)
76 TIGR03787 marine_sort_RR prote 99.4 4E-12 8.7E-17 137.1 17.0 118 963-1095 1-120 (227)
77 PRK10701 DNA-binding transcrip 99.4 3.9E-12 8.5E-17 138.7 16.9 116 964-1095 3-118 (240)
78 PRK10336 DNA-binding transcrip 99.4 4.5E-12 9.8E-17 135.5 16.7 117 964-1095 2-118 (219)
79 PRK10955 DNA-binding transcrip 99.4 4.7E-12 1E-16 136.7 16.6 115 964-1095 3-117 (232)
80 PRK11517 transcriptional regul 99.4 7.6E-12 1.7E-16 134.3 17.0 115 964-1094 2-116 (223)
81 smart00387 HATPase_c Histidine 99.4 5.6E-12 1.2E-16 118.5 13.8 109 509-665 1-110 (111)
82 PRK11083 DNA-binding response 99.4 8.9E-12 1.9E-16 133.9 16.8 118 963-1095 4-121 (228)
83 COG4567 Response regulator con 99.4 4E-12 8.8E-17 123.2 12.4 114 963-1091 10-123 (182)
84 TIGR02875 spore_0_A sporulatio 99.4 6.9E-12 1.5E-16 139.3 16.2 119 963-1094 3-123 (262)
85 PRK10840 transcriptional regul 99.4 8.3E-12 1.8E-16 134.5 16.0 118 962-1094 3-125 (216)
86 CHL00148 orf27 Ycf27; Reviewed 99.4 1.8E-11 3.9E-16 133.0 17.6 118 962-1095 6-123 (240)
87 TIGR01387 cztR_silR_copR heavy 99.4 1.3E-11 2.8E-16 131.7 16.1 116 965-1095 1-116 (218)
88 PRK10923 glnG nitrogen regulat 99.3 1.5E-11 3.3E-16 148.3 17.4 118 963-1095 4-121 (469)
89 PRK09958 DNA-binding transcrip 99.3 1.9E-11 4.2E-16 129.4 16.0 116 964-1094 2-118 (204)
90 PRK15115 response regulator Gl 99.3 1.8E-11 4E-16 146.6 16.2 118 963-1095 6-123 (444)
91 PRK14084 two-component respons 99.3 2.6E-11 5.7E-16 133.1 16.1 115 964-1095 2-118 (246)
92 PRK14868 DNA topoisomerase VI 99.3 1.4E-11 2.9E-16 148.7 14.4 111 507-663 40-159 (795)
93 PRK11361 acetoacetate metaboli 99.3 2.7E-11 5.9E-16 145.6 16.2 118 962-1094 4-121 (457)
94 PRK10365 transcriptional regul 99.3 2.5E-11 5.5E-16 145.1 15.0 118 963-1095 6-123 (441)
95 TIGR02915 PEP_resp_reg putativ 99.3 2.9E-11 6.3E-16 144.8 15.5 113 965-1094 1-118 (445)
96 PRK09483 response regulator; P 99.3 5E-11 1.1E-15 127.5 15.8 116 964-1094 3-120 (217)
97 PRK09935 transcriptional regul 99.3 7.1E-11 1.5E-15 125.2 16.4 117 963-1094 4-122 (210)
98 PRK10360 DNA-binding transcrip 99.3 6.6E-11 1.4E-15 124.4 15.9 113 964-1094 3-117 (196)
99 PRK11697 putative two-componen 99.3 5.4E-11 1.2E-15 129.8 15.4 115 963-1095 2-118 (238)
100 TIGR01052 top6b DNA topoisomer 99.3 2.4E-11 5.1E-16 143.0 12.8 113 507-663 22-142 (488)
101 PRK10710 DNA-binding transcrip 99.3 1.2E-10 2.6E-15 126.5 17.5 117 963-1095 11-127 (240)
102 PRK12555 chemotaxis-specific m 99.3 5.4E-11 1.2E-15 137.3 15.5 115 964-1094 2-129 (337)
103 TIGR01818 ntrC nitrogen regula 99.3 5.2E-11 1.1E-15 143.4 15.8 115 965-1094 1-115 (463)
104 PF00512 HisKA: His Kinase A ( 99.2 3E-11 6.6E-16 105.4 9.0 66 394-459 2-68 (68)
105 PRK15479 transcriptional regul 99.2 1.9E-10 4.1E-15 123.0 16.9 117 964-1095 2-118 (221)
106 PRK09390 fixJ response regulat 99.2 1.4E-10 3E-15 121.4 15.0 118 963-1095 4-121 (202)
107 PRK10100 DNA-binding transcrip 99.2 1.7E-10 3.7E-15 124.3 14.4 113 962-1094 10-126 (216)
108 PRK00742 chemotaxis-specific m 99.2 2.5E-10 5.4E-15 132.7 16.0 114 963-1092 4-130 (354)
109 PRK09581 pleD response regulat 99.2 3.5E-10 7.6E-15 135.1 17.6 118 964-1094 4-121 (457)
110 PRK10610 chemotaxis regulatory 99.2 1.2E-09 2.7E-14 104.2 17.0 121 963-1096 6-127 (129)
111 PRK11475 DNA-binding transcrip 99.1 3.7E-10 7.9E-15 120.9 13.5 105 975-1094 3-114 (207)
112 PRK13435 response regulator; P 99.1 7.1E-10 1.5E-14 111.4 14.8 116 962-1096 5-122 (145)
113 cd00075 HATPase_c Histidine ki 99.1 4.3E-10 9.3E-15 104.0 11.7 100 514-662 1-102 (103)
114 PRK14867 DNA topoisomerase VI 99.1 2.4E-10 5.3E-15 138.2 12.3 111 511-667 34-151 (659)
115 COG2201 CheB Chemotaxis respon 99.1 5.4E-10 1.2E-14 125.7 13.8 103 963-1081 2-108 (350)
116 PRK15369 two component system 99.1 1.9E-09 4.1E-14 113.4 16.5 118 962-1094 3-122 (211)
117 PRK13558 bacterio-opsin activa 99.1 6.7E-10 1.4E-14 139.9 15.1 116 963-1093 8-125 (665)
118 TIGR01925 spIIAB anti-sigma F 99.1 7.7E-10 1.7E-14 110.5 12.2 96 510-662 36-135 (137)
119 PRK10651 transcriptional regul 99.1 2.6E-09 5.5E-14 113.5 16.7 117 963-1094 7-125 (216)
120 PRK10403 transcriptional regul 99.1 2.3E-09 5E-14 113.6 16.1 116 963-1093 7-124 (215)
121 PRK15411 rcsA colanic acid cap 99.0 2.3E-09 4.9E-14 115.0 14.0 115 964-1094 2-122 (207)
122 COG3851 UhpB Signal transducti 99.0 1.9E-07 4.1E-12 102.7 27.9 183 402-664 311-493 (497)
123 COG3707 AmiR Response regulato 99.0 2.7E-09 5.9E-14 109.2 12.2 113 963-1091 6-119 (194)
124 PRK09191 two-component respons 99.0 5.3E-09 1.1E-13 115.8 15.5 116 963-1096 138-255 (261)
125 PRK03660 anti-sigma F factor; 99.0 4E-09 8.7E-14 106.5 12.4 101 510-667 36-140 (146)
126 PRK10693 response regulator of 98.9 6E-09 1.3E-13 118.5 12.6 88 991-1093 2-90 (303)
127 COG4564 Signal transduction hi 98.9 1.7E-06 3.6E-11 94.3 27.4 212 375-667 237-449 (459)
128 cd00156 REC Signal receiver do 98.9 2.9E-08 6.2E-13 90.6 12.3 112 966-1092 1-112 (113)
129 COG0643 CheA Chemotaxis protei 98.8 5.7E-08 1.2E-12 120.3 18.2 143 469-667 391-575 (716)
130 COG4585 Signal transduction hi 98.8 4.6E-06 9.9E-11 97.5 31.6 124 473-665 242-365 (365)
131 COG3920 Signal transduction hi 98.8 9.6E-07 2.1E-11 95.5 23.9 192 393-667 18-217 (221)
132 COG2972 Predicted signal trans 98.8 2.3E-06 4.9E-11 103.0 28.7 181 400-666 265-453 (456)
133 PRK15029 arginine decarboxylas 98.7 8E-08 1.7E-12 119.5 13.5 116 964-1094 2-132 (755)
134 COG3850 NarQ Signal transducti 98.7 1.3E-05 2.8E-10 93.4 28.3 185 401-664 376-567 (574)
135 PRK04069 serine-protein kinase 98.7 1.8E-07 3.9E-12 96.3 12.2 102 510-666 39-144 (161)
136 COG3279 LytT Response regulato 98.5 4.2E-07 9.1E-12 99.9 11.1 115 963-1094 2-118 (244)
137 KOG0519 Sensory transduction h 98.5 1.2E-06 2.5E-11 111.3 15.7 404 385-891 377-783 (786)
138 TIGR01924 rsbW_low_gc serine-p 98.5 2.4E-06 5.3E-11 87.8 14.0 100 511-665 40-143 (159)
139 PF14501 HATPase_c_5: GHKL dom 98.4 3.3E-06 7.2E-11 79.7 12.7 84 510-650 2-89 (100)
140 COG3275 LytS Putative regulato 98.4 5.8E-05 1.3E-09 86.7 23.7 130 465-667 414-553 (557)
141 smart00388 HisKA His Kinase A 98.4 1.5E-06 3.3E-11 73.7 7.9 63 395-458 3-65 (66)
142 KOG0787 Dehydrogenase kinase [ 98.3 4.8E-05 1E-09 85.1 19.1 207 403-663 146-378 (414)
143 cd00082 HisKA Histidine Kinase 98.1 1.2E-05 2.6E-10 67.6 8.1 62 394-455 4-65 (65)
144 PRK11107 hybrid sensory histid 98.0 4E-05 8.7E-10 100.4 15.0 118 959-1093 533-650 (919)
145 COG3706 PleD Response regulato 97.9 7.5E-06 1.6E-10 95.5 5.0 91 987-1094 13-103 (435)
146 TIGR00585 mutl DNA mismatch re 97.9 8E-05 1.7E-09 85.2 11.4 87 513-651 22-114 (312)
147 COG1389 DNA topoisomerase VI, 97.5 0.00031 6.8E-09 80.4 9.8 110 510-663 33-150 (538)
148 PF13581 HATPase_c_2: Histidin 97.4 0.0015 3.2E-08 64.0 11.9 92 510-661 28-123 (125)
149 PRK15426 putative diguanylate 97.1 0.04 8.6E-07 68.4 22.9 80 172-251 201-291 (570)
150 COG2172 RsbW Anti-sigma regula 96.8 0.012 2.6E-07 59.6 11.3 88 510-652 37-129 (146)
151 smart00448 REC cheY-homologous 96.5 0.013 2.9E-07 45.1 7.6 54 964-1028 2-55 (55)
152 PRK00095 mutL DNA mismatch rep 96.5 0.011 2.4E-07 73.7 10.6 96 513-660 22-124 (617)
153 PF06490 FleQ: Flagellar regul 96.4 0.024 5.1E-07 54.5 9.9 106 964-1092 1-107 (109)
154 PF13589 HATPase_c_3: Histidin 96.0 0.0041 9E-08 62.3 2.6 68 591-664 35-106 (137)
155 cd02071 MM_CoA_mut_B12_BD meth 95.2 0.49 1.1E-05 46.3 13.8 107 969-1090 10-121 (122)
156 PRK02261 methylaspartate mutas 94.8 0.84 1.8E-05 45.8 14.4 119 961-1094 2-135 (137)
157 TIGR00640 acid_CoA_mut_C methy 93.6 2.8 6.1E-05 41.7 15.4 110 969-1093 13-127 (132)
158 PRK05559 DNA topoisomerase IV 93.3 0.16 3.5E-06 63.6 7.4 84 510-641 34-132 (631)
159 PF02743 Cache_1: Cache domain 91.8 0.27 5.9E-06 44.1 4.9 53 203-258 14-72 (81)
160 PF03709 OKR_DC_1_N: Orn/Lys/A 91.1 1.6 3.4E-05 42.4 9.7 104 976-1094 7-113 (115)
161 TIGR01059 gyrB DNA gyrase, B s 90.9 0.34 7.4E-06 61.0 6.2 84 510-641 27-125 (654)
162 COG5381 Uncharacterized protei 90.6 0.54 1.2E-05 46.4 5.8 26 516-541 66-91 (184)
163 COG4999 Uncharacterized domain 90.6 1.1 2.3E-05 43.0 7.5 112 959-1089 8-121 (140)
164 cd02067 B12-binding B12 bindin 90.1 3.2 6.9E-05 40.2 10.9 94 969-1077 10-108 (119)
165 PRK05218 heat shock protein 90 90.0 0.93 2E-05 56.7 8.8 59 591-653 74-144 (613)
166 PRK14083 HSP90 family protein; 89.9 0.33 7.1E-06 60.2 4.7 20 591-610 64-83 (601)
167 PF00072 Response_reg: Respons 89.8 1.8 3.9E-05 40.5 8.8 111 711-889 1-112 (112)
168 COG0323 MutL DNA mismatch repa 88.4 0.47 1E-05 59.5 4.6 28 591-618 54-81 (638)
169 cd04728 ThiG Thiazole synthase 86.8 8.3 0.00018 42.2 12.3 103 969-1094 107-225 (248)
170 PRK15399 lysine decarboxylase 86.6 5.4 0.00012 50.5 12.2 116 964-1096 2-124 (713)
171 PRK05644 gyrB DNA gyrase subun 86.4 1.4 3E-05 55.4 7.0 84 510-641 34-132 (638)
172 PTZ00272 heat shock protein 83 85.3 0.91 2E-05 57.2 4.7 21 590-610 72-92 (701)
173 TIGR01055 parE_Gneg DNA topois 85.0 0.82 1.8E-05 57.2 4.1 51 591-641 63-125 (625)
174 TIGR01501 MthylAspMutase methy 85.0 14 0.0003 37.0 11.9 109 971-1094 14-133 (134)
175 TIGR03815 CpaE_hom_Actino heli 84.2 3.3 7.1E-05 47.7 8.4 84 986-1092 1-85 (322)
176 PRK15400 lysine decarboxylase 82.9 9.1 0.0002 48.5 12.0 116 964-1096 2-124 (714)
177 PRK00208 thiG thiazole synthas 82.6 21 0.00046 39.2 13.0 100 972-1094 110-225 (250)
178 COG2185 Sbm Methylmalonyl-CoA 80.3 48 0.001 33.5 13.6 118 962-1093 12-137 (143)
179 COG0745 OmpR Response regulato 78.4 12 0.00025 41.1 9.6 114 710-891 2-115 (229)
180 cd02072 Glm_B12_BD B12 binding 78.3 47 0.001 33.0 12.8 105 971-1090 12-127 (128)
181 PTZ00130 heat shock protein 90 76.5 3 6.4E-05 53.1 4.8 18 591-608 136-153 (814)
182 PF02310 B12-binding: B12 bind 76.0 17 0.00036 34.9 9.1 93 971-1079 13-112 (121)
183 smart00433 TOP2c Topoisomerase 74.5 1.8 4E-05 54.0 2.3 49 591-639 34-94 (594)
184 PRK09426 methylmalonyl-CoA mut 70.2 61 0.0013 41.5 14.3 116 964-1094 584-708 (714)
185 cd02069 methionine_synthase_B1 69.6 38 0.00082 36.7 10.7 100 963-1077 89-200 (213)
186 cd02070 corrinoid_protein_B12- 68.9 48 0.001 35.4 11.4 99 963-1077 83-190 (201)
187 PF07379 DUF1494: Protein of u 68.7 9 0.0002 38.6 5.1 54 116-184 62-122 (170)
188 COG2204 AtoC Response regulato 63.9 28 0.0006 42.0 9.0 116 709-892 5-120 (464)
189 PRK14939 gyrB DNA gyrase subun 61.2 7.7 0.00017 49.5 3.9 51 591-641 70-132 (756)
190 PRK00043 thiE thiamine-phospha 60.9 1.2E+02 0.0027 32.0 12.8 90 985-1091 103-206 (212)
191 KOG1979 DNA mismatch repair pr 60.0 11 0.00024 45.6 4.6 28 591-618 58-85 (694)
192 KOG1977 DNA mismatch repair pr 59.0 12 0.00027 46.0 4.8 57 513-617 21-77 (1142)
193 PLN03237 DNA topoisomerase 2; 58.5 16 0.00034 49.6 6.1 55 591-645 112-178 (1465)
194 TIGR00343 pyridoxal 5'-phospha 57.5 61 0.0013 36.4 9.6 124 964-1095 114-250 (287)
195 cd05212 NAD_bind_m-THF_DH_Cycl 56.0 31 0.00066 34.8 6.5 55 959-1029 25-83 (140)
196 PF10087 DUF2325: Uncharacteri 55.3 81 0.0018 29.4 8.9 90 964-1068 1-93 (97)
197 TIGR01334 modD putative molybd 53.7 43 0.00093 37.7 7.8 76 989-1082 192-273 (277)
198 PF03602 Cons_hypoth95: Conser 53.3 45 0.00097 35.2 7.6 68 963-1041 66-139 (183)
199 PRK13111 trpA tryptophan synth 52.0 42 0.00091 37.5 7.4 58 1031-1092 75-138 (258)
200 COG5385 Uncharacterized protei 51.5 3E+02 0.0064 28.5 18.1 182 398-651 19-203 (214)
201 CHL00162 thiG thiamin biosynth 50.6 2.2E+02 0.0048 31.6 12.2 104 972-1094 124-239 (267)
202 TIGR02956 TMAO_torS TMAO reduc 50.2 56 0.0012 43.4 9.6 119 708-892 702-821 (968)
203 PF05690 ThiG: Thiazole biosyn 50.1 1.6E+02 0.0034 32.4 10.8 98 977-1092 114-223 (247)
204 PHA02569 39 DNA topoisomerase 49.1 16 0.00035 45.6 4.0 52 591-642 80-145 (602)
205 PRK01130 N-acetylmannosamine-6 48.8 1.7E+02 0.0036 31.6 11.4 81 980-1077 112-201 (221)
206 cd04727 pdxS PdxS is a subunit 47.9 1.2E+02 0.0025 34.3 9.8 122 964-1094 112-246 (283)
207 COG0326 HtpG Molecular chapero 47.0 17 0.00036 45.0 3.5 17 591-607 75-91 (623)
208 PLN02591 tryptophan synthase 46.4 59 0.0013 36.1 7.4 57 1031-1092 65-127 (250)
209 TIGR00262 trpA tryptophan synt 46.3 62 0.0014 36.0 7.7 56 1032-1091 74-135 (256)
210 PRK00278 trpC indole-3-glycero 46.3 4.1E+02 0.009 29.6 14.2 100 972-1087 146-254 (260)
211 KOG1978 DNA mismatch repair pr 46.3 21 0.00045 44.3 4.1 27 591-617 51-77 (672)
212 PRK00742 chemotaxis-specific m 46.1 5.3E+02 0.011 29.8 17.7 35 709-743 4-39 (354)
213 COG4753 Response regulator con 45.9 49 0.0011 40.0 7.1 118 710-892 3-120 (475)
214 TIGR00007 phosphoribosylformim 45.7 1.9E+02 0.0041 31.3 11.3 56 1017-1077 158-217 (230)
215 PRK11889 flhF flagellar biosyn 45.2 2.3E+02 0.0049 33.9 12.1 108 962-1078 269-385 (436)
216 PF01408 GFO_IDH_MocA: Oxidore 45.2 1.9E+02 0.004 27.4 10.0 38 1058-1095 73-112 (120)
217 cd04729 NanE N-acetylmannosami 44.8 2.5E+02 0.0054 30.2 12.0 79 982-1077 118-205 (219)
218 PRK14974 cell division protein 44.6 1.9E+02 0.004 33.7 11.4 110 962-1077 168-286 (336)
219 TIGR02370 pyl_corrinoid methyl 44.5 1.5E+02 0.0031 31.7 9.9 98 964-1077 86-192 (197)
220 PF02254 TrkA_N: TrkA-N domain 44.5 2.4E+02 0.0053 26.5 10.7 93 963-1077 22-115 (116)
221 PRK05718 keto-hydroxyglutarate 44.1 2.8E+02 0.0061 30.0 12.0 95 980-1090 10-105 (212)
222 PLN03029 type-a response regul 43.4 1.9E+02 0.004 31.3 10.7 137 707-889 7-143 (222)
223 cd04724 Tryptophan_synthase_al 42.9 84 0.0018 34.6 8.0 57 1031-1092 63-125 (242)
224 PRK09966 putative inner membra 42.6 5.4E+02 0.012 30.2 15.5 29 224-252 74-104 (407)
225 COG0512 PabA Anthranilate/para 42.6 36 0.00079 35.9 4.7 78 963-1056 2-81 (191)
226 TIGR02311 HpaI 2,4-dihydroxyhe 41.7 2.2E+02 0.0048 31.5 11.1 74 1016-1092 32-106 (249)
227 TIGR02154 PhoB phosphate regul 41.6 2E+02 0.0043 30.0 10.6 36 709-745 3-38 (226)
228 TIGR01425 SRP54_euk signal rec 41.0 2.5E+02 0.0054 33.8 11.9 108 962-1075 128-244 (429)
229 PRK07649 para-aminobenzoate/an 39.6 36 0.00077 36.3 4.3 48 965-1023 2-49 (195)
230 TIGR01058 parE_Gpos DNA topois 39.5 27 0.00058 44.1 3.8 51 591-641 67-129 (637)
231 PRK04180 pyridoxal biosynthesi 39.4 78 0.0017 35.7 6.9 123 964-1095 121-256 (293)
232 PF01596 Methyltransf_3: O-met 39.3 1.4E+02 0.003 32.2 8.7 57 963-1026 71-130 (205)
233 PRK10558 alpha-dehydro-beta-de 39.2 1.9E+02 0.0041 32.3 10.0 71 1017-1090 40-111 (256)
234 PRK10161 transcriptional regul 38.7 1.8E+02 0.0039 30.7 9.7 35 709-744 3-37 (229)
235 PRK10841 hybrid sensory kinase 38.7 1.2E+02 0.0026 40.3 9.9 117 707-891 800-916 (924)
236 PRK06731 flhF flagellar biosyn 38.2 2.7E+02 0.0059 31.3 11.2 106 963-1077 104-218 (270)
237 PRK07896 nicotinate-nucleotide 37.9 1.2E+02 0.0026 34.4 8.3 69 989-1075 203-271 (289)
238 PRK05458 guanosine 5'-monophos 37.9 4.4E+02 0.0095 30.6 12.9 96 964-1076 113-228 (326)
239 TIGR00736 nifR3_rel_arch TIM-b 37.9 3.7E+02 0.0081 29.5 11.8 57 1017-1077 161-219 (231)
240 TIGR01163 rpe ribulose-phospha 37.7 2.6E+02 0.0056 29.5 10.7 87 978-1077 96-192 (210)
241 cd04726 KGPDC_HPS 3-Keto-L-gul 37.6 3.9E+02 0.0085 28.0 12.0 83 976-1076 93-184 (202)
242 COG4122 Predicted O-methyltran 37.4 98 0.0021 33.7 7.2 56 964-1028 86-143 (219)
243 PRK09468 ompR osmolarity respo 37.1 2.1E+02 0.0045 30.5 10.0 36 708-744 5-40 (239)
244 PRK12726 flagellar biosynthesi 37.0 4.1E+02 0.0089 31.6 12.5 107 962-1077 234-349 (407)
245 PRK11466 hybrid sensory histid 36.9 1.3E+02 0.0027 39.8 9.8 117 708-891 681-797 (914)
246 TIGR03787 marine_sort_RR prote 36.8 2E+02 0.0044 30.2 9.7 34 710-744 2-35 (227)
247 PRK07114 keto-hydroxyglutarate 36.3 4.1E+02 0.0088 29.0 11.7 98 980-1089 10-108 (222)
248 TIGR03151 enACPred_II putative 36.3 2.7E+02 0.0059 31.9 11.0 82 978-1076 101-188 (307)
249 TIGR03239 GarL 2-dehydro-3-deo 35.4 2.5E+02 0.0054 31.2 10.2 71 1017-1090 33-104 (249)
250 PRK12724 flagellar biosynthesi 35.4 3.3E+02 0.0071 32.8 11.6 103 962-1077 252-366 (432)
251 CHL00200 trpA tryptophan synth 34.7 1.1E+02 0.0024 34.3 7.3 55 1032-1091 79-139 (263)
252 cd00331 IGPS Indole-3-glycerol 34.5 3.2E+02 0.0069 29.3 10.8 86 983-1083 118-211 (217)
253 cd00564 TMP_TenI Thiamine mono 34.5 2.9E+02 0.0062 28.5 10.2 55 1017-1077 115-177 (196)
254 PLN03128 DNA topoisomerase 2; 34.3 54 0.0012 44.0 5.5 52 591-642 87-150 (1135)
255 cd04723 HisA_HisF Phosphoribos 33.9 2.1E+02 0.0046 31.3 9.3 54 1019-1077 161-217 (233)
256 PRK03958 tRNA 2'-O-methylase; 33.8 3.5E+02 0.0075 28.4 10.1 63 963-1036 32-96 (176)
257 PRK05703 flhF flagellar biosyn 33.8 3.5E+02 0.0075 32.6 11.8 102 962-1077 251-364 (424)
258 COG0813 DeoD Purine-nucleoside 33.5 49 0.0011 35.7 4.0 27 504-530 16-42 (236)
259 PF14689 SPOB_a: Sensor_kinase 33.4 2E+02 0.0043 24.6 7.1 42 400-446 18-59 (62)
260 PRK13125 trpA tryptophan synth 33.4 4.5E+02 0.0097 28.9 11.9 90 974-1079 117-215 (244)
261 TIGR00064 ftsY signal recognit 33.3 2.8E+02 0.0061 31.2 10.3 105 962-1076 100-223 (272)
262 PRK10128 2-keto-3-deoxy-L-rham 33.1 2.8E+02 0.006 31.2 10.1 71 1017-1090 39-110 (267)
263 cd00452 KDPG_aldolase KDPG and 33.0 1.4E+02 0.0031 31.4 7.6 69 990-1077 102-170 (190)
264 TIGR01037 pyrD_sub1_fam dihydr 33.0 95 0.0021 35.2 6.7 58 1033-1095 223-286 (300)
265 cd02068 radical_SAM_B12_BD B12 32.9 3.3E+02 0.0072 26.4 9.7 103 973-1091 3-109 (127)
266 PRK08385 nicotinate-nucleotide 32.9 2.2E+02 0.0048 32.2 9.3 96 964-1076 156-257 (278)
267 cd00429 RPE Ribulose-5-phospha 32.8 3.3E+02 0.0071 28.7 10.5 59 1018-1077 128-193 (211)
268 TIGR00693 thiE thiamine-phosph 32.5 2.8E+02 0.006 29.1 9.8 70 990-1076 101-178 (196)
269 PRK00771 signal recognition pa 32.4 4.1E+02 0.0089 32.1 12.0 59 962-1026 123-184 (437)
270 PRK00748 1-(5-phosphoribosyl)- 32.2 1.9E+02 0.0041 31.3 8.7 56 1017-1077 159-219 (233)
271 PRK06895 putative anthranilate 32.0 1.1E+02 0.0024 32.2 6.5 32 963-994 2-33 (190)
272 PRK15347 two component system 31.9 1.3E+02 0.0029 39.6 8.8 118 708-891 690-809 (921)
273 PF02581 TMP-TENI: Thiamine mo 31.8 2.3E+02 0.0049 29.6 8.8 81 978-1076 88-175 (180)
274 PRK11091 aerobic respiration c 31.3 1.8E+02 0.004 37.6 9.8 38 708-746 525-562 (779)
275 COG0167 PyrD Dihydroorotate de 31.3 97 0.0021 35.5 6.2 61 1033-1096 228-295 (310)
276 TIGR00735 hisF imidazoleglycer 31.3 3.8E+02 0.0083 29.6 11.0 53 1033-1090 188-247 (254)
277 PRK07259 dihydroorotate dehydr 31.1 4.3E+02 0.0092 30.0 11.6 59 1032-1095 222-286 (301)
278 COG4566 TtrR Response regulato 30.8 2.3E+02 0.0051 30.1 8.3 36 710-746 6-41 (202)
279 PRK13566 anthranilate synthase 30.7 1.8E+02 0.004 37.4 9.2 39 958-996 522-560 (720)
280 TIGR01182 eda Entner-Doudoroff 30.6 5.4E+02 0.012 27.7 11.4 85 989-1089 13-97 (204)
281 PRK08883 ribulose-phosphate 3- 30.1 4.2E+02 0.0091 28.8 10.7 105 978-1092 98-214 (220)
282 PRK00811 spermidine synthase; 29.9 2.6E+02 0.0056 31.6 9.4 68 963-1042 101-180 (283)
283 PRK06096 molybdenum transport 29.9 1.8E+02 0.004 32.9 8.0 69 989-1075 193-261 (284)
284 cd04730 NPD_like 2-Nitropropan 29.8 5.7E+02 0.012 27.5 11.9 56 1017-1077 122-184 (236)
285 PRK10816 DNA-binding transcrip 29.6 3.2E+02 0.0069 28.6 9.8 35 710-745 2-36 (223)
286 KOG4175 Tryptophan synthase al 29.4 1E+02 0.0022 32.7 5.3 39 1048-1086 94-138 (268)
287 PRK11840 bifunctional sulfur c 29.4 7.8E+02 0.017 28.5 12.9 108 968-1094 180-299 (326)
288 cd02065 B12-binding_like B12 b 28.9 2.3E+02 0.0049 27.1 7.7 74 969-1056 10-87 (125)
289 PRK11173 two-component respons 28.9 3.6E+02 0.0078 28.7 10.2 36 709-745 4-39 (237)
290 COG0157 NadC Nicotinate-nucleo 28.2 2.8E+02 0.0061 31.3 8.8 92 965-1075 161-259 (280)
291 PRK09836 DNA-binding transcrip 28.1 3.6E+02 0.0078 28.3 9.9 34 710-744 2-35 (227)
292 PRK07428 nicotinate-nucleotide 27.9 2.1E+02 0.0045 32.6 8.1 68 990-1075 201-268 (288)
293 PRK13587 1-(5-phosphoribosyl)- 27.9 1.5E+02 0.0033 32.4 7.0 54 1019-1077 164-220 (234)
294 PRK10955 DNA-binding transcrip 27.5 3.3E+02 0.0073 28.5 9.5 34 710-744 3-36 (232)
295 PRK10669 putative cation:proto 27.4 4.5E+02 0.0098 32.7 11.8 93 962-1076 440-533 (558)
296 PRK05848 nicotinate-nucleotide 27.3 4.4E+02 0.0095 29.8 10.4 69 990-1076 187-255 (273)
297 PRK08007 para-aminobenzoate sy 27.1 80 0.0017 33.3 4.4 90 965-1074 2-93 (187)
298 PRK10643 DNA-binding transcrip 26.8 4.1E+02 0.0089 27.5 10.0 34 710-744 2-35 (222)
299 COG4564 Signal transduction hi 26.5 1.4E+02 0.003 34.2 6.1 16 120-135 91-106 (459)
300 COG0784 CheY FOG: CheY-like re 26.4 5.4E+02 0.012 24.1 10.7 36 707-743 4-39 (130)
301 TIGR00566 trpG_papA glutamine 26.3 1.3E+02 0.0028 31.7 5.8 76 965-1056 2-79 (188)
302 PRK12704 phosphodiesterase; Pr 26.1 71 0.0015 39.4 4.3 44 1051-1094 251-296 (520)
303 PF00448 SRP54: SRP54-type pro 26.1 1.9E+02 0.0041 30.8 7.1 110 963-1078 30-149 (196)
304 PRK10701 DNA-binding transcrip 25.8 3.9E+02 0.0084 28.4 9.7 34 710-744 3-36 (240)
305 PRK06552 keto-hydroxyglutarate 25.7 6.8E+02 0.015 27.1 11.3 97 980-1089 8-105 (213)
306 PRK05637 anthranilate synthase 25.6 1.9E+02 0.0041 31.2 7.0 77 963-1056 2-80 (208)
307 COG0159 TrpA Tryptophan syntha 25.5 1.9E+02 0.0042 32.3 7.1 18 1064-1081 115-132 (265)
308 PRK06015 keto-hydroxyglutarate 25.5 5.4E+02 0.012 27.7 10.3 61 1023-1089 33-93 (201)
309 TIGR00875 fsa_talC_mipB fructo 25.5 2.5E+02 0.0054 30.4 7.8 88 979-1079 94-186 (213)
310 COG0742 N6-adenine-specific me 25.2 1.7E+02 0.0038 31.0 6.4 53 963-1025 67-122 (187)
311 PRK10046 dpiA two-component re 25.2 4E+02 0.0087 28.5 9.6 37 709-745 5-42 (225)
312 cd01948 EAL EAL domain. This d 25.1 2.1E+02 0.0045 30.5 7.4 94 976-1083 135-239 (240)
313 PRK11359 cyclic-di-GMP phospho 25.1 4.1E+02 0.0088 34.3 11.3 103 976-1092 681-794 (799)
314 PF01081 Aldolase: KDPG and KH 24.8 4.2E+02 0.0092 28.3 9.3 94 980-1089 3-97 (196)
315 cd04740 DHOD_1B_like Dihydroor 24.7 1.5E+02 0.0033 33.5 6.4 59 1032-1095 219-283 (296)
316 PRK05458 guanosine 5'-monophos 24.6 1.6E+02 0.0034 34.1 6.5 54 1018-1076 112-166 (326)
317 smart00052 EAL Putative diguan 24.6 2.8E+02 0.0061 29.6 8.3 93 977-1083 137-240 (241)
318 PRK03659 glutathione-regulated 24.4 4.5E+02 0.0098 33.1 11.1 95 962-1078 423-518 (601)
319 COG2820 Udp Uridine phosphoryl 24.4 2E+02 0.0042 31.7 6.6 26 505-531 20-45 (248)
320 PF07568 HisKA_2: Histidine ki 24.3 5E+02 0.011 23.0 8.4 72 401-482 2-73 (76)
321 PF08066 PMC2NT: PMC2NT (NUC01 24.3 2.4E+02 0.0052 26.1 6.5 56 431-487 25-80 (91)
322 TIGR03088 stp2 sugar transfera 24.3 4.3E+02 0.0092 30.4 10.3 107 963-1095 230-338 (374)
323 PRK10336 DNA-binding transcrip 24.3 4.3E+02 0.0094 27.3 9.6 33 710-743 2-34 (219)
324 PRK07695 transcriptional regul 24.1 6E+02 0.013 26.8 10.5 53 1017-1075 115-174 (201)
325 PRK10529 DNA-binding transcrip 24.1 4.3E+02 0.0094 27.6 9.6 33 710-743 3-35 (225)
326 PF10669 Phage_Gp23: Protein g 24.1 6E+02 0.013 23.8 8.8 61 340-401 17-77 (121)
327 PRK06543 nicotinate-nucleotide 24.0 5.5E+02 0.012 29.1 10.4 65 990-1075 198-262 (281)
328 PLN02871 UDP-sulfoquinovose:DA 23.9 6.2E+02 0.014 30.5 11.9 107 962-1096 290-401 (465)
329 KOG1562 Spermidine synthase [A 23.8 2.5E+02 0.0054 32.0 7.4 62 964-1036 147-214 (337)
330 PRK04457 spermidine synthase; 23.7 7.7E+02 0.017 27.4 11.6 68 963-1042 91-166 (262)
331 COG0313 Predicted methyltransf 23.5 5.5E+02 0.012 29.0 10.0 91 963-1072 31-127 (275)
332 cd00331 IGPS Indole-3-glycerol 23.2 3.3E+02 0.0072 29.1 8.5 56 1031-1091 59-116 (217)
333 PRK07107 inosine 5-monophospha 23.1 3.5E+02 0.0076 33.3 9.4 30 1047-1076 350-379 (502)
334 PRK10840 transcriptional regul 23.0 3.6E+02 0.0079 28.4 8.7 27 865-891 97-123 (216)
335 PRK12723 flagellar biosynthesi 22.9 7.3E+02 0.016 29.5 11.7 105 962-1077 206-319 (388)
336 cd01748 GATase1_IGP_Synthase T 22.9 2.5E+02 0.0054 29.7 7.3 32 965-996 1-32 (198)
337 COG1856 Uncharacterized homolo 22.8 4.9E+02 0.011 28.5 9.0 75 993-1081 166-254 (275)
338 PRK11083 DNA-binding response 22.7 5.6E+02 0.012 26.6 10.1 33 710-743 5-37 (228)
339 PRK02083 imidazole glycerol ph 22.7 8E+02 0.017 27.0 11.5 53 1033-1090 186-245 (253)
340 KOG1478 3-keto sterol reductas 22.5 52 0.0011 36.3 1.9 23 1069-1091 296-318 (341)
341 PLN02335 anthranilate synthase 22.4 1.6E+02 0.0035 31.9 5.8 79 962-1056 18-98 (222)
342 PRK13170 hisH imidazole glycer 22.4 2.7E+02 0.0059 29.5 7.4 34 964-997 2-35 (196)
343 PTZ00108 DNA topoisomerase 2-l 22.4 1.1E+02 0.0023 42.1 5.1 55 591-645 95-161 (1388)
344 cd01568 QPRTase_NadC Quinolina 22.3 2.7E+02 0.0058 31.3 7.7 69 989-1076 185-253 (269)
345 PF09936 Methyltrn_RNA_4: SAM- 22.1 6.9E+02 0.015 26.4 9.8 101 963-1081 43-161 (185)
346 cd03115 SRP The signal recogni 22.1 4.9E+02 0.011 26.5 9.2 121 962-1088 28-158 (173)
347 PF08269 Cache_2: Cache domain 22.1 1.2E+02 0.0026 27.9 4.1 38 214-251 33-71 (95)
348 PRK05749 3-deoxy-D-manno-octul 22.0 5.4E+02 0.012 30.5 10.8 110 963-1095 263-388 (425)
349 COG2022 ThiG Uncharacterized e 22.0 6.8E+02 0.015 27.6 9.9 83 977-1077 121-210 (262)
350 PRK10742 putative methyltransf 21.9 5E+02 0.011 28.9 9.4 97 962-1078 110-218 (250)
351 PRK01362 putative translaldola 21.9 4E+02 0.0087 28.9 8.5 87 979-1079 94-185 (214)
352 PF10090 DUF2328: Uncharacteri 21.7 9.6E+02 0.021 25.3 18.6 169 410-649 2-173 (182)
353 PF01729 QRPTase_C: Quinolinat 21.6 2.9E+02 0.0062 28.8 7.2 69 990-1076 85-153 (169)
354 PRK02506 dihydroorotate dehydr 21.4 90 0.0019 35.8 3.7 48 1048-1095 240-294 (310)
355 TIGR00959 ffh signal recogniti 21.3 6.2E+02 0.013 30.5 10.8 61 962-1026 128-191 (428)
356 PRK10766 DNA-binding transcrip 21.2 5.7E+02 0.012 26.6 9.8 35 710-745 4-38 (221)
357 PRK14723 flhF flagellar biosyn 21.2 7.4E+02 0.016 32.2 11.9 103 963-1077 216-330 (767)
358 PRK10060 RNase II stability mo 21.0 5.4E+02 0.012 32.8 11.0 103 977-1093 545-658 (663)
359 PRK09016 quinolinate phosphori 20.9 3.6E+02 0.0077 30.8 8.2 66 989-1075 212-277 (296)
360 PTZ00314 inosine-5'-monophosph 20.8 7E+02 0.015 30.7 11.3 29 1049-1077 344-372 (495)
361 TIGR02875 spore_0_A sporulatio 20.8 5.3E+02 0.011 28.1 9.7 27 865-891 95-121 (262)
362 PRK04302 triosephosphate isome 20.6 1.1E+03 0.023 25.5 12.3 41 1034-1078 162-202 (223)
363 PRK08649 inosine 5-monophospha 20.6 6.8E+02 0.015 29.5 10.8 54 1017-1077 154-214 (368)
364 PF01564 Spermine_synth: Sperm 20.5 1.9E+02 0.004 32.1 5.8 69 963-1042 101-180 (246)
365 PRK03562 glutathione-regulated 20.4 5.4E+02 0.012 32.6 10.6 93 962-1076 423-516 (621)
366 TIGR00417 speE spermidine synt 20.3 6.2E+02 0.013 28.2 10.1 68 963-1042 97-175 (270)
367 PRK15484 lipopolysaccharide 1, 20.3 1.3E+03 0.028 26.8 13.4 109 963-1095 225-344 (380)
368 TIGR00734 hisAF_rel hisA/hisF 20.2 2.8E+02 0.0062 30.1 7.1 54 1019-1077 156-212 (221)
No 1
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=2.2e-54 Score=553.07 Aligned_cols=484 Identities=23% Similarity=0.369 Sum_probs=352.1
Q ss_pred HHHHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcce
Q 001330 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELV 464 (1099)
Q Consensus 385 ~~ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~ 464 (1099)
++++++++.|+.|++++||||||||++|.|+++++.... ..++.+++++.|..++++|..+|+++++++|++++.+.++
T Consensus 438 ~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~-~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~~~~~l~ 516 (924)
T PRK10841 438 QAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE-LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 516 (924)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceee
Confidence 344556677888999999999999999999999987543 4566789999999999999999999999999999999999
Q ss_pred EEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccc
Q 001330 465 EEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544 (1099)
Q Consensus 465 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~ 544 (1099)
.++|++.+++++++..+.+.+.+|++.+.++.+... +..+.+|+.+|+|||.||++||+|||+.|.|.+.+...+
T Consensus 517 ~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~---~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~~~-- 591 (924)
T PRK10841 517 PREFSPREVINHITANYLPLVVKKRLGLYCFIEPDV---PVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRVDG-- 591 (924)
T ss_pred eEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCC---CcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEEeC--
Confidence 999999999999999999999999999887654332 346899999999999999999999999998887764321
Q ss_pred cchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCC
Q 001330 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624 (1099)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~ 624 (1099)
..+.|+|.|||+||+++++++||+||||.+.+..+..
T Consensus 592 -------------------------------------------~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~ 628 (924)
T PRK10841 592 -------------------------------------------DYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNF 628 (924)
T ss_pred -------------------------------------------CEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCC
Confidence 1578999999999999999999999999887665666
Q ss_pred CCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecccccccCCCCCCCCCCCCCCCCCCcccccchhhhccccc
Q 001330 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAA 704 (1099)
Q Consensus 625 ~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 704 (1099)
+|+||||+|||+||++|||+|+++|.. |.|++|+|.+|+....... .. ...
T Consensus 629 ~GtGLGL~I~k~lv~~~gG~I~v~S~~--g~Gt~F~i~LP~~~~~~~~------~~---------------------~~~ 679 (924)
T PRK10841 629 QGTGLGLAICEKLINMMDGDISVDSEP--GMGSQFTIRIPLYGAQYPQ------KK---------------------GVE 679 (924)
T ss_pred CCeehhHHHHHHHHHHCCCEEEEEEcC--CCcEEEEEEEECCcccccc------cc---------------------cCc
Confidence 799999999999999999999998765 4699999999985311100 00 001
Q ss_pred ccCCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCC
Q 001330 705 KSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSD 784 (1099)
Q Consensus 705 ~~~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 784 (1099)
...+..+.+...+......+..++.. +|..+........ ..
T Consensus 680 ~~~g~~i~l~~~~~~~~~~l~~~l~~-~G~~v~~~~~~~~--------------------~~------------------ 720 (924)
T PRK10841 680 GLQGKRCWLAVRNASLEQFLETLLQR-SGIQVQRYEGQEP--------------------TP------------------ 720 (924)
T ss_pred ccCCCEEEEEcCCHHHHHHHHHHHHH-CCCeEEEcccccC--------------------Cc------------------
Confidence 22566778888888888888888887 7776654321100 00
Q ss_pred CCCcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccc
Q 001330 785 TGHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSRE 864 (1099)
Q Consensus 785 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 864 (1099)
..+++.|............. .+. ... .. ...
T Consensus 721 -------------------------------~d~~i~d~~~~~~~~~~~~~-~~~-------------~~~-~~--~~~- 751 (924)
T PRK10841 721 -------------------------------EDVLITDDPVQKKWQGRAVI-TFC-------------RRH-IG--IPL- 751 (924)
T ss_pred -------------------------------CcEEEEcCccccccchhhhh-hhh-------------hcc-cc--Chh-
Confidence 00011111000000000000 000 000 00 000
Q ss_pred ccccCccccccccCCCcchHHHHHhhcccccCCcccCCcccccccchhhhcccCCCCCcccccccccccccccccccchh
Q 001330 865 YRLLPICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSL 944 (1099)
Q Consensus 865 ~~~~~~~~~~~~kP~~~~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1099)
.......+..|.....+...+..+......... . .
T Consensus 752 ---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----------------------~--------------~----- 786 (924)
T PRK10841 752 ---EIAPGEWVHSTATPHELPALLARIYRIELESDD-----------------------S--------------A----- 786 (924)
T ss_pred ---hcccCceeeccCChHHHHHHHHHHhhccccccc-----------------------c--------------c-----
Confidence 000011122333333333333322110000000 0 0
Q ss_pred hhhhhccCCCCCCCCCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEe
Q 001330 945 QQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024 (1099)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmD 1024 (1099)
...+.. ........+.+||||||++.++..+..+|+..|+.|..+.||.+|++.+.+ ..||+||||
T Consensus 787 ~~~~~~---~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~-----------~~~DlVl~D 852 (924)
T PRK10841 787 NALPST---DKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK-----------NHIDIVLTD 852 (924)
T ss_pred cccccc---ccccccCCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-----------CCCCEEEEc
Confidence 000000 000011235689999999999999999999999999999999999999853 479999999
Q ss_pred cCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1025 i~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
++||+|||++++++||+.. ..+|||++|++...+...+|+++||++||.||++.++|...+.++.....
T Consensus 853 ~~mP~mdG~el~~~ir~~~----~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~r 921 (924)
T PRK10841 853 VNMPNMDGYRLTQRLRQLG----LTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERVR 921 (924)
T ss_pred CCCCCCCHHHHHHHHHhcC----CCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999753 46899999999999999999999999999999999999999998876543
No 2
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=1.4e-54 Score=562.03 Aligned_cols=500 Identities=27% Similarity=0.400 Sum_probs=378.1
Q ss_pred HHHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceE
Q 001330 386 QAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVE 465 (1099)
Q Consensus 386 ~ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~ 465 (1099)
+++++++.|.+|++++||||||||++|+|+++++.... ..+++.++++.|..++++|..+++++++++|+|++++.++.
T Consensus 285 ~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~ 363 (919)
T PRK11107 285 RAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP-LTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKLVLEN 363 (919)
T ss_pred HHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 34455666889999999999999999999999886543 34667899999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEecccc
Q 001330 466 EEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSF 545 (1099)
Q Consensus 466 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~ 545 (1099)
.+|++.+++++++..+...+.++++.+.++.+... +..+.+|+.+|+||+.||++||+|||+.|.|.+++......
T Consensus 364 ~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~~- 439 (919)
T PRK11107 364 IPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDV---PDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRALS- 439 (919)
T ss_pred eecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCC---CceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEecC-
Confidence 99999999999999999999999999988764432 34688999999999999999999999999887776543210
Q ss_pred chhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCC
Q 001330 546 KQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625 (1099)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~ 625 (1099)
.+...+.|+|.|+|+|||++++++||+||||.+.+++++.+
T Consensus 440 ---------------------------------------~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~ 480 (919)
T PRK11107 440 ---------------------------------------NTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHG 480 (919)
T ss_pred ---------------------------------------CCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCC
Confidence 11235889999999999999999999999999988777778
Q ss_pred CccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecccccccCCCCCCCCCCCCCCCCCCcccccchhhhcccccc
Q 001330 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAAK 705 (1099)
Q Consensus 626 GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 705 (1099)
|+||||+|||++++.|||+|++.|.. |.|++|+|.+|+....... ... + ....
T Consensus 481 g~GLGL~i~~~i~~~~gG~i~v~s~~--~~Gt~f~i~lp~~~~~~~~------~~~------~-------------~~~~ 533 (919)
T PRK11107 481 GTGLGLVITQKLVNEMGGDISFHSQP--NRGSTFWFHLPLDLNPNPI------IDG------L-------------PTDC 533 (919)
T ss_pred CcchhHHHHHHHHHHhCCEEEEEecC--CCCEEEEEEEEeccCCccc------ccc------C-------------Cccc
Confidence 99999999999999999999998765 3699999999985421100 000 0 0112
Q ss_pred cCCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCC
Q 001330 706 SEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDT 785 (1099)
Q Consensus 706 ~~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 785 (1099)
..|.++++++++...+..+..++.. +|+.+....+... +.
T Consensus 534 ~~g~~ili~d~~~~~~~~l~~~L~~-~g~~v~~~~~~~~----l~----------------------------------- 573 (919)
T PRK11107 534 LAGKRLLYVEPNSAAAQATLDILSE-TPLEVTYSPTLSQ----LP----------------------------------- 573 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHH-CCCEEEEcCCHHH----hc-----------------------------------
Confidence 3678899999999999999999998 7888776554332 00
Q ss_pred CCcccccccccCcCCCCcccccccccccCcceEEEEcCCCC---ChHHHHHHHHhccccCCCCcceEEEeccchhccccc
Q 001330 786 GHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAG---SVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHS 862 (1099)
Q Consensus 786 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~---~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~ 862 (1099)
...+.++++|.... .............. ... .++....... ...
T Consensus 574 ---------------------------~~~~d~il~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~i~~~~~~~--~~~ 620 (919)
T PRK11107 574 ---------------------------EAHYDILLLGLPVTFREPLTMLHERLAKAKS---MTD-FLILALPCHE--QVL 620 (919)
T ss_pred ---------------------------cCCCCEEEecccCCCCCCHHHHHHHHHhhhh---cCC-cEEEEeCCcc--hhh
Confidence 00122333332221 12222222222111 111 1222211111 111
Q ss_pred ccccccCccccccccCCCcchHHHHHhhcccccCCcccCCcccccccchhhhcccCCCCCcccccccccccccccccccc
Q 001330 863 REYRLLPICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCS 942 (1099)
Q Consensus 863 ~~~~~~~~~~~~~~kP~~~~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1099)
.......+.+.++.||+....+...+......... + .
T Consensus 621 ~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~------------------------~----------------~--- 657 (919)
T PRK11107 621 AEQLKQDGADACLSKPLSHTRLLPALLEPCHHKQP------------------------P----------------L--- 657 (919)
T ss_pred HHHHhhCCCceEECCCCCHHHHHHHHHHhhccccc------------------------c----------------c---
Confidence 12334466778899999999888777532100000 0 0
Q ss_pred hhhhhhhccCCCCCCCCCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEE
Q 001330 943 SLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM 1022 (1099)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIl 1022 (1099)
.........+.+||||||++.++..+..+|+..|+.|..+.+|.+|++.+.+ .+||+||
T Consensus 658 ----------~~~~~~~~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~-----------~~~dlil 716 (919)
T PRK11107 658 ----------LPPTDESRLPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQ-----------RPFDLIL 716 (919)
T ss_pred ----------ccccccccCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-----------CCCCEEE
Confidence 0000011234689999999999999999999999999999999999998843 4799999
Q ss_pred EecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1023 mDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
||+.||+|||+++++.||+... ..++|||++|++...+...+|+++||++|+.||++.++|...+.+++..
T Consensus 717 ~D~~mp~~~g~~~~~~lr~~~~--~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 717 MDIQMPGMDGIRACELIRQLPH--NQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EeCCCCCCcHHHHHHHHHhccc--CCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 9999999999999999997532 3468999999999999999999999999999999999999999887643
No 3
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=1.6e-53 Score=552.38 Aligned_cols=423 Identities=28% Similarity=0.424 Sum_probs=315.4
Q ss_pred HHHHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcce
Q 001330 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELV 464 (1099)
Q Consensus 385 ~~ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~ 464 (1099)
+++++++..|..|++++||||||||++|.|+++++.... ...+++++++.|..++.+|..+++++++++|+|++++.++
T Consensus 389 ~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~-~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 467 (921)
T PRK15347 389 QRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTP-LTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQMTLS 467 (921)
T ss_pred HHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccce
Confidence 344556677889999999999999999999999997654 3466789999999999999999999999999999999999
Q ss_pred EEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccc
Q 001330 465 EEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544 (1099)
Q Consensus 465 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~ 544 (1099)
.+++++.+++++++..+...+..+++.+.+..++.. +..+.+|+.+|+|||.|||+||+|||+.|.|.|++...+.
T Consensus 468 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i~~~~~~~- 543 (921)
T PRK15347 468 LEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHV---PLYLHLDSLRLRQILVNLLGNAVKFTETGGIRLRVKRHEQ- 543 (921)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCC---CceEEECHHHHHHHHHHHHHHHhhcCCCCCEEEEEEEcCC-
Confidence 999999999999999999999999999887654332 3468999999999999999999999999998887653211
Q ss_pred cchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCC
Q 001330 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624 (1099)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~ 624 (1099)
.+.|+|.|+|+||+++++++||+||+|.+.. .
T Consensus 544 --------------------------------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----~ 575 (921)
T PRK15347 544 --------------------------------------------QLCFTVEDTGCGIDIQQQQQIFTPFYQADTH----S 575 (921)
T ss_pred --------------------------------------------EEEEEEEEcCCCCCHHHHHHHhcCcccCCCC----C
Confidence 5789999999999999999999999997642 3
Q ss_pred CCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecccccccCCCCCCCCCCCCCCCCCCcccccchhhhccccc
Q 001330 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAA 704 (1099)
Q Consensus 625 ~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 704 (1099)
+|+||||+|||++++.|||+|+++|.. |.||+|+|.+|+...... ....
T Consensus 576 ~g~GLGL~i~~~~~~~~gG~i~i~s~~--~~Gt~f~i~lp~~~~~~~-------~~~~---------------------- 624 (921)
T PRK15347 576 QGTGLGLTIASSLAKMMGGELTLFSTP--GVGSCFSLVLPLNEYAPP-------EPLK---------------------- 624 (921)
T ss_pred CCCchHHHHHHHHHHHcCCEEEEEecC--CCceEEEEEEECCCCCCc-------cccc----------------------
Confidence 699999999999999999999998765 469999999998531110 0000
Q ss_pred ccCCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCC
Q 001330 705 KSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSD 784 (1099)
Q Consensus 705 ~~~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 784 (1099)
+. + .....+...+.. +|......
T Consensus 625 ---~~-~-------~~~~~~~~~~~~-~~~~~~~~--------------------------------------------- 647 (921)
T PRK15347 625 ---GE-L-------SAPLALHRQLSA-WGITCQPG--------------------------------------------- 647 (921)
T ss_pred ---cc-c-------cchHHHHHHHHH-cCCccccc---------------------------------------------
Confidence 00 0 000001111111 11000000
Q ss_pred CCCcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccc
Q 001330 785 TGHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSRE 864 (1099)
Q Consensus 785 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 864 (1099)
...... .. .++
T Consensus 648 --~~~~~~---------------------~~-------------~~~--------------------------------- 658 (921)
T PRK15347 648 --HQNPAL---------------------LD-------------PEL--------------------------------- 658 (921)
T ss_pred --ccchhh---------------------cc-------------hhh---------------------------------
Confidence 000000 00 000
Q ss_pred ccccCccccccccCCCcchHHHHHhhcccccCCcccCCcccccccchhhhcccCCCCCcccccccccccccccccccchh
Q 001330 865 YRLLPICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSL 944 (1099)
Q Consensus 865 ~~~~~~~~~~~~kP~~~~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1099)
+..+..+...+......... .+ .
T Consensus 659 -------------~~~~~~~~~~~~~~~~~~~~-----------------------~~----------------~----- 681 (921)
T PRK15347 659 -------------AYLPGRLYDLLQQIIQGAPN-----------------------EP----------------V----- 681 (921)
T ss_pred -------------hhcchHHHHHHHHHhhcCCC-----------------------cc----------------c-----
Confidence 00000011111100000000 00 0
Q ss_pred hhhhhccCCCCCCCCCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEe
Q 001330 945 QQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024 (1099)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmD 1024 (1099)
. .. .....+.+||||||++.++..+..+|+..|+.+..|.+|.+|++.+. ...||+||||
T Consensus 682 -----~---~~-~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~-----------~~~~dlil~D 741 (921)
T PRK15347 682 -----I---NL-PLQPWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGR-----------QHRFDLVLMD 741 (921)
T ss_pred -----c---cC-CCCcccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-----------cCCCCEEEEe
Confidence 0 00 00112358999999999999999999999999999999999999884 3479999999
Q ss_pred cCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1025 i~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
++||+|||++++++||+......+++|||++|++.+.+...+|+++|+++||.||++.++|..++.++.+
T Consensus 742 ~~mp~~~G~~~~~~ir~~~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 742 IRMPGLDGLETTQLWRDDPNNLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CCCCCCCHHHHHHHHHhchhhcCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 9999999999999999754333357899999999999999999999999999999999999999987654
No 4
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=7.4e-50 Score=520.68 Aligned_cols=368 Identities=29% Similarity=0.473 Sum_probs=311.8
Q ss_pred HHHHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcce
Q 001330 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELV 464 (1099)
Q Consensus 385 ~~ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~ 464 (1099)
+++++++..|..|++++||||||||++|.|+++++.+.. ..++++++++.|..++++|..+++++++++|+|.+...++
T Consensus 455 ~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~-~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~~~~ 533 (968)
T TIGR02956 455 AEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTG-LTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHLSIS 533 (968)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeee
Confidence 344556677889999999999999999999999987643 4466789999999999999999999999999999999999
Q ss_pred EEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccc
Q 001330 465 EEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544 (1099)
Q Consensus 465 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~ 544 (1099)
.++|++.+++++++..+...+..+++.+.++.+... +..+.+|+.+|+|||.|||+||+|||+.|.|.|.+.....
T Consensus 534 ~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~- 609 (968)
T TIGR02956 534 PRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQL---PNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDD- 609 (968)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCC---CceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCC-
Confidence 999999999999999999999999999988865332 3468999999999999999999999999998887654221
Q ss_pred cchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCC
Q 001330 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624 (1099)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~ 624 (1099)
..+.|+|.|+|+|||++++++||+||||.+. .+..
T Consensus 610 -------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~--~~~~ 644 (968)
T TIGR02956 610 -------------------------------------------SSLLFEVEDTGCGIAEEEQATLFDAFTQADG--RRRS 644 (968)
T ss_pred -------------------------------------------CeEEEEEEeCCCCCCHHHHHHHHhhhhccCC--CCCC
Confidence 0278999999999999999999999999983 2345
Q ss_pred CCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecccccccCCCCCCCCCCCCCCCCCCcccccchhhhccccc
Q 001330 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAA 704 (1099)
Q Consensus 625 ~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 704 (1099)
+|+||||+|||++++.|||+|++.+.+ |.|++|+|.+|+...... .
T Consensus 645 ~g~GLGL~i~~~l~~~~gG~i~~~s~~--~~Gt~f~~~lp~~~~~~~-------~------------------------- 690 (968)
T TIGR02956 645 GGTGLGLAISQRLVEAMDGELGVESEL--GVGSCFWFTLPLTRGKPA-------E------------------------- 690 (968)
T ss_pred CCccHHHHHHHHHHHHcCCEEEEEecC--CCcEEEEEEEEcCCCCcc-------c-------------------------
Confidence 799999999999999999999998765 469999999987420000 0
Q ss_pred ccCCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCC
Q 001330 705 KSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSD 784 (1099)
Q Consensus 705 ~~~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 784 (1099)
. ..
T Consensus 691 -------------------------~-----------------------------------------~~----------- 693 (968)
T TIGR02956 691 -------------------------D-----------------------------------------SA----------- 693 (968)
T ss_pred -------------------------c-----------------------------------------cc-----------
Confidence 0 00
Q ss_pred CCCcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccc
Q 001330 785 TGHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSRE 864 (1099)
Q Consensus 785 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 864 (1099)
.
T Consensus 694 ------------------------------------------------------------~------------------- 694 (968)
T TIGR02956 694 ------------------------------------------------------------T------------------- 694 (968)
T ss_pred ------------------------------------------------------------c-------------------
Confidence 0
Q ss_pred ccccCccccccccCCCcchHHHHHhhcccccCCcccCCcccccccchhhhcccCCCCCcccccccccccccccccccchh
Q 001330 865 YRLLPICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSL 944 (1099)
Q Consensus 865 ~~~~~~~~~~~~kP~~~~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1099)
. +
T Consensus 695 -------~-----~------------------------------------------------------------------ 696 (968)
T TIGR02956 695 -------L-----T------------------------------------------------------------------ 696 (968)
T ss_pred -------c-----c------------------------------------------------------------------
Confidence 0 0
Q ss_pred hhhhhccCCCCCCCCCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEe
Q 001330 945 QQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024 (1099)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmD 1024 (1099)
.....+.+||||||++.++..+..+|+..|+.|..+.||.+|++.+. ..+||+||||
T Consensus 697 ------------~~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlvl~D 753 (968)
T TIGR02956 697 ------------VIDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFH-----------QHAFDLALLD 753 (968)
T ss_pred ------------cccccccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-----------CCCCCEEEEC
Confidence 00011237999999999999999999999999999999999999984 2479999999
Q ss_pred cCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1025 i~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
++||+|||+++++.||+..... .++|||++|++...+...+|+++|+++|+.||++.++|...|.+++.
T Consensus 754 ~~mp~~~g~~~~~~ir~~~~~~-~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 754 INLPDGDGVTLLQQLRAIYGAK-NEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred CCCCCCCHHHHHHHHHhCcccc-CCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 9999999999999999754321 12899999999999999999999999999999999999999988763
No 5
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=2.8e-49 Score=503.50 Aligned_cols=366 Identities=31% Similarity=0.510 Sum_probs=306.9
Q ss_pred HHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEE
Q 001330 388 ERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEE 467 (1099)
Q Consensus 388 e~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~ 467 (1099)
+++++.|+.|++++||||||||++|.|+++++.... ..+++.++++.|..++.+|..+++++++++|++++++.+..++
T Consensus 277 ~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~ 355 (779)
T PRK11091 277 EKASRDKTTFISTISHELRTPLNGIVGLSRILLDTE-LTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDNQP 355 (779)
T ss_pred HHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEeec
Confidence 344456889999999999999999999999987543 3466789999999999999999999999999999999999999
Q ss_pred ecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccccch
Q 001330 468 FNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547 (1099)
Q Consensus 468 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~ 547 (1099)
+++.++++++...+...+..+++.+.++...+. +..+.+|+.+|+||+.||++||+||++.|.|.+.+.....
T Consensus 356 ~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~---- 428 (779)
T PRK11091 356 IDFTDFLADLENLSGLQAEQKGLRFDLEPLLPL---PHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEEG---- 428 (779)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCC---CceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEccC----
Confidence 999999999999999999999999988764432 3468999999999999999999999999988887654211
Q ss_pred hhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccc-cccCCCCCCC
Q 001330 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV-KETALGHQEG 626 (1099)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~-d~s~~~~~~G 626 (1099)
..+.|+|.|+|+|||++++++||+|||++ +.++.+..+|
T Consensus 429 ----------------------------------------~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~G 468 (779)
T PRK11091 429 ----------------------------------------DMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATG 468 (779)
T ss_pred ----------------------------------------CEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCC
Confidence 14789999999999999999999999999 4545555689
Q ss_pred ccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecccccccCCCCCCCCCCCCCCCCCCcccccchhhhccccccc
Q 001330 627 LGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKS 706 (1099)
Q Consensus 627 tGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 706 (1099)
+||||+|||+||+.|||+|++.|.. |.||+|+|.+|++...... .
T Consensus 469 tGLGL~i~~~iv~~~gG~i~v~s~~--g~Gt~f~i~lP~~~~~~~~------~--------------------------- 513 (779)
T PRK11091 469 TGIGLAVSKRLAQAMGGDITVTSEE--GKGSCFTLTIHAPAVAEEV------E--------------------------- 513 (779)
T ss_pred cchHHHHHHHHHHHcCCEEEEEecC--CCeEEEEEEEecccccccc------c---------------------------
Confidence 9999999999999999999998765 4699999999874310000 0
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
. . ..
T Consensus 514 -----------------------~-----------------------------~-----------~~------------- 517 (779)
T PRK11091 514 -----------------------D-----------------------------A-----------FD------------- 517 (779)
T ss_pred -----------------------c-----------------------------c-----------cc-------------
Confidence 0 0 00
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
.
T Consensus 518 ----------------------------------------------------------~--------------------- 518 (779)
T PRK11091 518 ----------------------------------------------------------E--------------------- 518 (779)
T ss_pred ----------------------------------------------------------c---------------------
Confidence 0
Q ss_pred ccCccccccccCCCcchHHHHHhhcccccCCcccCCcccccccchhhhcccCCCCCcccccccccccccccccccchhhh
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQ 946 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1099)
.
T Consensus 519 -----~-------------------------------------------------------------------------- 519 (779)
T PRK11091 519 -----D-------------------------------------------------------------------------- 519 (779)
T ss_pred -----c--------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhccCCCCCCCCCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC
Q 001330 947 VAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026 (1099)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~ 1026 (1099)
..+..+.+||||||++.++..+..+|+..|+.+..+.+|.+|++.+. ...||+||||+.
T Consensus 520 ----------~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~-----------~~~~Dlvl~D~~ 578 (779)
T PRK11091 520 ----------DMPLPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFD-----------PDEYDLVLLDIQ 578 (779)
T ss_pred ----------cccccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh-----------cCCCCEEEEcCC
Confidence 00012347999999999999999999999999999999999999884 347999999999
Q ss_pred CCCCCHHHHHHHHhccccccCCC-ccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1027 MPVMNGWEATRLIRKEEEQYDVH-IPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1027 MP~mdG~e~~r~IR~~~~~~~~~-ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
||+|||++++++||+..+ ... +|||++|++... ...+|+++|+++||.||++.++|...+++++.
T Consensus 579 mp~~~G~e~~~~ir~~~~--~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 644 (779)
T PRK11091 579 LPDMTGLDIARELRERYP--REDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWD 644 (779)
T ss_pred CCCCCHHHHHHHHHhccc--cCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhc
Confidence 999999999999997542 124 499999998764 46789999999999999999999999998864
No 6
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=1.1e-47 Score=497.43 Aligned_cols=362 Identities=27% Similarity=0.451 Sum_probs=305.2
Q ss_pred HHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--Ccce
Q 001330 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGK--MELV 464 (1099)
Q Consensus 387 ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~--~~l~ 464 (1099)
+++..+.|..|++++||||||||++|.|+++++.... ..++.+++++.|..++++|..++++++++++++.|. +.++
T Consensus 437 ~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~~~~~~~~~ 515 (914)
T PRK11466 437 AEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP-ALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVS 515 (914)
T ss_pred HHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcceec
Confidence 3445567888999999999999999999999987654 345678899999999999999999999999999884 5677
Q ss_pred EEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccc
Q 001330 465 EEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544 (1099)
Q Consensus 465 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~ 544 (1099)
.++|++.+++++++..+...+..+++.+.++.++.. +..+.+|+.+|+||+.||++||+|||+.|.|.|.+...+.
T Consensus 516 ~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~v~~d~~~l~qil~NLl~NAik~~~~g~I~i~~~~~~~- 591 (914)
T PRK11466 516 DEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDL---PTALMGDPRRIRQVITNLLSNALRFTDEGSIVLRSRTDGE- 591 (914)
T ss_pred ccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEcCC-
Confidence 789999999999999999999999999988764432 3468999999999999999999999999998887643211
Q ss_pred cchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCC
Q 001330 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624 (1099)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~ 624 (1099)
.+.|.|.|+|+|||++.++++|+||++.+. ..
T Consensus 592 --------------------------------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~ 623 (914)
T PRK11466 592 --------------------------------------------QWLVEVEDSGCGIDPAKLAEIFQPFVQVSG----KR 623 (914)
T ss_pred --------------------------------------------EEEEEEEECCCCCCHHHHHHHhchhhcCCC----CC
Confidence 578999999999999999999999998753 23
Q ss_pred CCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecccccccCCCCCCCCCCCCCCCCCCcccccchhhhccccc
Q 001330 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAA 704 (1099)
Q Consensus 625 ~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 704 (1099)
+|+||||+|||++++.|||+|++.+.. +.|++|+|.+|+...... .+
T Consensus 624 ~g~GLGL~i~~~l~~~~gG~i~v~s~~--~~Gt~f~i~lP~~~~~~~--------~~----------------------- 670 (914)
T PRK11466 624 GGTGLGLTISSRLAQAMGGELSATSTP--EVGSCFCLRLPLRVATAP--------VP----------------------- 670 (914)
T ss_pred CCCcccHHHHHHHHHHcCCEEEEEecC--CCCeEEEEEEEccccccc--------cc-----------------------
Confidence 699999999999999999999998765 359999999986420000 00
Q ss_pred ccCCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCC
Q 001330 705 KSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSD 784 (1099)
Q Consensus 705 ~~~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 784 (1099)
. ..
T Consensus 671 -------------------------~-----------------------------------------~~----------- 673 (914)
T PRK11466 671 -------------------------K-----------------------------------------TV----------- 673 (914)
T ss_pred -------------------------c-----------------------------------------cc-----------
Confidence 0 00
Q ss_pred CCCcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccc
Q 001330 785 TGHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSRE 864 (1099)
Q Consensus 785 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 864 (1099)
.
T Consensus 674 ------------------------------------------------------------------------------~- 674 (914)
T PRK11466 674 ------------------------------------------------------------------------------N- 674 (914)
T ss_pred ------------------------------------------------------------------------------c-
Confidence 0
Q ss_pred ccccCccccccccCCCcchHHHHHhhcccccCCcccCCcccccccchhhhcccCCCCCcccccccccccccccccccchh
Q 001330 865 YRLLPICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSL 944 (1099)
Q Consensus 865 ~~~~~~~~~~~~kP~~~~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1099)
.
T Consensus 675 ----~--------------------------------------------------------------------------- 675 (914)
T PRK11466 675 ----Q--------------------------------------------------------------------------- 675 (914)
T ss_pred ----c---------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhhhccCCCCCCCCCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEe
Q 001330 945 QQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024 (1099)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmD 1024 (1099)
.....+++||||||++.++..+..+|+..|+.|..+.+|.+|++.+.+ ..+||+||||
T Consensus 676 ------------~~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~----------~~~~Dlvl~D 733 (914)
T PRK11466 676 ------------AVRLDGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQN----------SEPFAAALVD 733 (914)
T ss_pred ------------ccccCCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHc----------CCCCCEEEEe
Confidence 000123579999999999999999999999999999999999998742 2469999999
Q ss_pred cCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1025 i~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
++||+|||++++++||+. .+++|||++|++...+...+++++|+++||.||++.++|..+|.++++.
T Consensus 734 ~~mp~~~G~~~~~~lr~~----~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 734 FDLPDYDGITLARQLAQQ----YPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred CCCCCCCHHHHHHHHHhh----CCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 999999999999999974 3468999999999999999999999999999999999999999887653
No 7
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=1.9e-44 Score=479.44 Aligned_cols=373 Identities=25% Similarity=0.440 Sum_probs=306.5
Q ss_pred HHHHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcce
Q 001330 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELV 464 (1099)
Q Consensus 385 ~~ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~ 464 (1099)
+++.++...+.+|++++||||||||++|.|+++++.......++..++++.+..++++|..+++++++++|++++...+.
T Consensus 703 ~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~~~~~~~ 782 (1197)
T PRK09959 703 NKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQ 782 (1197)
T ss_pred HHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceee
Confidence 34445566788999999999999999999999998765545555668899999999999999999999999999999999
Q ss_pred EEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccc
Q 001330 465 EEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544 (1099)
Q Consensus 465 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~ 544 (1099)
.+++++.+++++++..+...+..+++.+.+....+ ....+.+|+.+|.||+.||++||+||++.|.+.+.+.....
T Consensus 783 ~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~- 858 (1197)
T PRK09959 783 PQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFP---DHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHI- 858 (1197)
T ss_pred eeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCC---CceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeee-
Confidence 99999999999999999999999999988754321 13468999999999999999999999999877665532111
Q ss_pred cchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCC
Q 001330 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624 (1099)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~ 624 (1099)
..+...+.|+|.|+|+|||++.+++||+||++.+..+ ..
T Consensus 859 ---------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~--~~ 897 (1197)
T PRK09959 859 ---------------------------------------DDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGR--QQ 897 (1197)
T ss_pred ---------------------------------------cCCceEEEEEEEEcCCCCCHHHHHHhhccccccccCC--CC
Confidence 0112257899999999999999999999999976532 34
Q ss_pred CCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecccccccCCCCCCCCCCCCCCCCCCcccccchhhhccccc
Q 001330 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAA 704 (1099)
Q Consensus 625 ~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 704 (1099)
+|+||||+|||+||+.|||+|++.+.+ |.|++|++.+|+.......
T Consensus 898 ~G~GLGL~i~~~iv~~~gG~i~v~s~~--~~Gt~f~i~lP~~~~~~~~-------------------------------- 943 (1197)
T PRK09959 898 TGSGLGLMICKELIKNMQGDLSLESHP--GIGTTFTITIPVEISQQVA-------------------------------- 943 (1197)
T ss_pred CCcCchHHHHHHHHHHcCCEEEEEeCC--CCcEEEEEEEEccccchhc--------------------------------
Confidence 699999999999999999999998765 3699999999873200000
Q ss_pred ccCCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCC
Q 001330 705 KSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSD 784 (1099)
Q Consensus 705 ~~~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 784 (1099)
. . . +. .
T Consensus 944 -------------------------~------------------------------~---~-~~----~----------- 949 (1197)
T PRK09959 944 -------------------------T------------------------------V---E-AK----A----------- 949 (1197)
T ss_pred -------------------------c------------------------------c---c-cc----c-----------
Confidence 0 0 0 00 0
Q ss_pred CCCcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccc
Q 001330 785 TGHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSRE 864 (1099)
Q Consensus 785 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 864 (1099)
.
T Consensus 950 ----------------------------------------------------------------------------~--- 950 (1197)
T PRK09959 950 ----------------------------------------------------------------------------E--- 950 (1197)
T ss_pred ----------------------------------------------------------------------------c---
Confidence 0
Q ss_pred ccccCccccccccCCCcchHHHHHhhcccccCCcccCCcccccccchhhhcccCCCCCcccccccccccccccccccchh
Q 001330 865 YRLLPICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSL 944 (1099)
Q Consensus 865 ~~~~~~~~~~~~kP~~~~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1099)
.|
T Consensus 951 ------------~~------------------------------------------------------------------ 952 (1197)
T PRK09959 951 ------------QP------------------------------------------------------------------ 952 (1197)
T ss_pred ------------cc------------------------------------------------------------------
Confidence 00
Q ss_pred hhhhhccCCCCCCCCCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEe
Q 001330 945 QQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD 1024 (1099)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmD 1024 (1099)
.......+||||||++.++..+..+|+..|+++..+.++.+|++.+. ...||+||+|
T Consensus 953 ------------~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~dlil~D 1009 (1197)
T PRK09959 953 ------------ITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVS-----------MQHYDLLITD 1009 (1197)
T ss_pred ------------cccccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh-----------cCCCCEEEEe
Confidence 00001247999999999999999999999999999999999999884 3479999999
Q ss_pred cCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1025 CEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1025 i~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
+.||+|+|+++++.||+.. +.+|||++|++...+...+|+++|+++||.||++.++|...|+++..
T Consensus 1010 ~~mp~~~g~~~~~~i~~~~----~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1010 VNMPNMDGFELTRKLREQN----SSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CCCCCCCHHHHHHHHHhcC----CCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 9999999999999999642 46899999999999999999999999999999999999999987643
No 8
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=1.1e-41 Score=430.44 Aligned_cols=233 Identities=16% Similarity=0.271 Sum_probs=201.0
Q ss_pred HHHHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcce
Q 001330 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELV 464 (1099)
Q Consensus 385 ~~ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~ 464 (1099)
++++++...|.+|++++||||||||++|.|+++++.... .+++..++++.|..++++|.++++++++++|+|+|+..++
T Consensus 441 ~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~-~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~~~~~l~ 519 (894)
T PRK10618 441 REYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTS-DEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLETQDWKPE 519 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 344555678899999999999999999999999986543 4566789999999999999999999999999999999999
Q ss_pred EEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccc
Q 001330 465 EEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544 (1099)
Q Consensus 465 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~ 544 (1099)
.++|++.+++++++..+.+.+.+|++.+.++..... +..+.+|+.+|+|||.||++||+|||+.|.|.|.+.....
T Consensus 520 ~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~---~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~~~~~- 595 (894)
T PRK10618 520 QELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKA---EQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQDES- 595 (894)
T ss_pred ceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCC---CcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEccC-
Confidence 999999999999999999999999999887653221 3468999999999999999999999999998887643211
Q ss_pred cchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCC
Q 001330 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624 (1099)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~ 624 (1099)
....+.|+|.|||+|||++.+++||+||++.+... +.+
T Consensus 596 -----------------------------------------~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~-~~~ 633 (894)
T PRK10618 596 -----------------------------------------SPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGD-RYG 633 (894)
T ss_pred -----------------------------------------CCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCC-CCC
Confidence 01258899999999999999999999999875432 345
Q ss_pred CCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 625 ~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
+|+||||+|||+||+.|||+|+|+|.+ |+||+|+|.+|+.
T Consensus 634 ~GtGLGLaI~k~Lve~~GG~I~v~S~~--g~GT~F~I~LPl~ 673 (894)
T PRK10618 634 KASGLTFFLCNQLCRKLGGHLTIKSRE--GLGTRYSIHLKML 673 (894)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEECC--CCcEEEEEEEEcc
Confidence 699999999999999999999998765 4699999999873
No 9
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=2.1e-40 Score=423.28 Aligned_cols=365 Identities=20% Similarity=0.275 Sum_probs=288.3
Q ss_pred hHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHH
Q 001330 393 NKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQ 472 (1099)
Q Consensus 393 ~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ 472 (1099)
....|++++||||||||++|.|+++++........+..++++.|..+++++..+++++++++|.+.+ ..+++++.+
T Consensus 449 ~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~----~~~~~~l~~ 524 (828)
T PRK13837 449 AVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGER----NTKPFDLSE 524 (828)
T ss_pred HHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCcEEcHHH
Confidence 4567999999999999999999999987655555677899999999999999999999999996544 357899999
Q ss_pred HHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC-CeEEEEEEEeccccchhhhh
Q 001330 473 LLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE-GHISVRAAVKKKSFKQDIIA 551 (1099)
Q Consensus 473 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~ 551 (1099)
++++++..+... ..+++.+.++.+.. ...+.+|+.+|.||+.||++||+||++. |.|.|++..........
T Consensus 525 ll~~~~~~~~~~-~~~~i~l~~~~~~~----~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~--- 596 (828)
T PRK13837 525 LVTEIAPLLRVS-LPPGVELDFDQDQE----PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKV--- 596 (828)
T ss_pred HHHHHHHHHHHH-ccCCcEEEEEeCCC----CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccc---
Confidence 999999988753 45778887765332 3468999999999999999999999865 56777665432110000
Q ss_pred ccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccH
Q 001330 552 SNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631 (1099)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGL 631 (1099)
......++...+.|+|.|+|+|||++.+++||+|||+.+. +|+||||
T Consensus 597 ---------------------------~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~------~G~GLGL 643 (828)
T PRK13837 597 ---------------------------LSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA------GGTGLGL 643 (828)
T ss_pred ---------------------------cccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC------CCCcchH
Confidence 0000001123688999999999999999999999997642 6999999
Q ss_pred HHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecccccccCCCCCCCCCCCCCCCCCCcccccchhhhcccccccCCCeE
Q 001330 632 GIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQM 711 (1099)
Q Consensus 632 aIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~v 711 (1099)
+|||++|+.|||+|++.|.+ |.|++|+|.+|.....+. .+
T Consensus 644 ~i~~~iv~~~gG~i~v~s~~--g~Gt~f~i~LP~~~~~~~--------~~------------------------------ 683 (828)
T PRK13837 644 ATVHGIVSAHAGYIDVQSTV--GRGTRFDVYLPPSSKVPV--------AP------------------------------ 683 (828)
T ss_pred HHHHHHHHHCCCEEEEEecC--CCeEEEEEEEeCCCCCCC--------Cc------------------------------
Confidence 99999999999999998764 469999999986320000 00
Q ss_pred EEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcccc
Q 001330 712 ILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHDVA 791 (1099)
Q Consensus 712 ~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 791 (1099)
... ..
T Consensus 684 -----------------------------------------------~~~----------~~------------------ 688 (828)
T PRK13837 684 -----------------------------------------------QAF----------FG------------------ 688 (828)
T ss_pred -----------------------------------------------ccc----------CC------------------
Confidence 000 00
Q ss_pred cccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccCcc
Q 001330 792 LDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLPIC 871 (1099)
Q Consensus 792 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 871 (1099)
T Consensus 689 -------------------------------------------------------------------------------- 688 (828)
T PRK13837 689 -------------------------------------------------------------------------------- 688 (828)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCcchHHHHHhhcccccCCcccCCcccccccchhhhcccCCCCCcccccccccccccccccccchhhhhhhcc
Q 001330 872 DHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQS 951 (1099)
Q Consensus 872 ~~~~~kP~~~~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1099)
|
T Consensus 689 ------~------------------------------------------------------------------------- 689 (828)
T PRK13837 689 ------P------------------------------------------------------------------------- 689 (828)
T ss_pred ------C-------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC
Q 001330 952 DGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN 1031 (1099)
Q Consensus 952 ~~~~~~~~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md 1031 (1099)
...+...+.+|||||||+..+..+...|+..||++..+.++.+|++.+.+ ...+||+||+ .||+|+
T Consensus 690 ---~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~---------~~~~~DlVll--~~~~~~ 755 (828)
T PRK13837 690 ---GPLPRGRGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISK---------GPERFDLVLV--DDRLLD 755 (828)
T ss_pred ---cccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh---------CCCCceEEEE--CCCCCC
Confidence 00000123579999999999999999999999999999999999998853 1235899999 799999
Q ss_pred HHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1032 GWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1032 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
|.++++.|++. .+.+|||++|+........+++.+| ++||.||++.++|..+|++.++.
T Consensus 756 g~~l~~~l~~~----~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 756 EEQAAAALHAA----APTLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred HHHHHHHHHhh----CCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 99999999864 2468999999999999999999999 99999999999999999988764
No 10
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-41 Score=364.83 Aligned_cols=225 Identities=24% Similarity=0.438 Sum_probs=194.9
Q ss_pred HhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecH
Q 001330 392 MNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTD-LAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNL 470 (1099)
Q Consensus 392 ~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~-~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL 470 (1099)
+.+..|.||+|||||||||++.+|+|.|.++...+.+ ...++..-.++++||.+||||||.+||++.+..+++.+.+|+
T Consensus 223 ~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~inf 302 (459)
T COG5002 223 RERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWINF 302 (459)
T ss_pred HHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHHHh
Confidence 3456799999999999999999999999877665443 457889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHhcCCE-EEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC-eEEEEEEEeccccchh
Q 001330 471 AQLLEEVVDMYYHVGIKKGVD-VVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG-HISVRAAVKKKSFKQD 548 (1099)
Q Consensus 471 ~~ll~~v~~~~~~~a~~k~i~-l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~ 548 (1099)
..++..+++.|....++..+. +.-+.+. .+.+|..|++++.||+.|+|+||+||+|+| .|++.+...+.
T Consensus 303 t~fl~~ii~R~e~~~~~e~~~~~vR~~p~----~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~----- 373 (459)
T COG5002 303 TAFLNEIINRFEMILKKETIARFVRDIPK----QDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRET----- 373 (459)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhcCCC----CceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCc-----
Confidence 999999999998775554443 3222222 345899999999999999999999999986 57776643221
Q ss_pred hhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCcc
Q 001330 549 IIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLG 628 (1099)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtG 628 (1099)
.+.++|.|.|.|||++++++||+||||+|+.|++..||||
T Consensus 374 ----------------------------------------~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTG 413 (459)
T COG5002 374 ----------------------------------------WVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTG 413 (459)
T ss_pred ----------------------------------------EEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCc
Confidence 6889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 629 LGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 629 LGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
|||+|+|+||+.|||.||.+|.+ |+|++|+|++|...
T Consensus 414 LGLaIakeiV~~hgG~iWA~s~~--gkgtt~~ftLPy~~ 450 (459)
T COG5002 414 LGLAIAKEIVQAHGGRIWAESEE--GKGTTFSFTLPYSG 450 (459)
T ss_pred hhHHHHHHHHHHhCCeEEEeccc--CCceEEEEEecccC
Confidence 99999999999999999998765 58999999999854
No 11
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-41 Score=421.69 Aligned_cols=586 Identities=28% Similarity=0.345 Sum_probs=348.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 001330 366 AAKREMFLCAALIKQMNATEQAERKSMNKTF--ALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDL 443 (1099)
Q Consensus 366 ~~~~e~~l~~~l~~~~~a~~~ae~~~~~k~~--fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L 443 (1099)
...|...+...+.+..+....++.+...+++ |+++++|||||||++ |+...+. +.....+++.+++..+.++..+
T Consensus 191 ~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~ 267 (786)
T KOG0519|consen 191 ALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GMLGGLS-DTDLDSDQRLILNTDRVSAKSL 267 (786)
T ss_pred hhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeeccccc--CcceEEe-ccccchHHHHHHHHHhhhcccc
Confidence 3445555556677777777777777777777 999999999999998 5544443 3344567899999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCcceEEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHH
Q 001330 444 LGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVS 523 (1099)
Q Consensus 444 ~~LIndlLdlskie~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~ 523 (1099)
+.++|+++|.+++++|.+++...+|++..+++.++..+.+.+.+++..+....+.+ .+..+.+|+.+++||+.|+++
T Consensus 268 ~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~---~p~~v~~de~~~~qv~~n~v~ 344 (786)
T KOG0519|consen 268 LSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSG---VPRNVRGDEARLRQVIANLVS 344 (786)
T ss_pred chhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCC---Ccceeeccceeeeeeehhhcc
Confidence 99999999999999999999999999999999999999999999999998887665 245799999999999999999
Q ss_pred hHhhccCCCeEEEEEEEeccccchhhhh--c-cccchhhccchhhhcc-CCCCCccccccccccCCCceeEEEEEEeCCC
Q 001330 524 NSMKFTSEGHISVRAAVKKKSFKQDIIA--S-NRNVISKCLSKLFFRN-KEGFDDLDALHSVERNPNLLQFEFEVDDTGK 599 (1099)
Q Consensus 524 NAiKfT~~G~I~v~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~ 599 (1099)
||+|||..|++..+++............ . ...+........+... .+++.. .........+......+.+.|+|.
T Consensus 345 naik~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~l~~~~~~~~~~~~ 423 (786)
T KOG0519|consen 345 NAIKFTHAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRA-PRHNIISLLSLLLQDIVLSPDSGL 423 (786)
T ss_pred ceecccccceEEEEEEeehhcchhhHHHHhhhhhhhhccchhhhHHHHhcccccc-ccccccccchhhHhheEeccCCce
Confidence 9999999999999988766533221110 0 0000000000000000 000000 000111222223456789999999
Q ss_pred CCCcccHhh-hccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecccccccCCCCCCC
Q 001330 600 GIPKDKQNS-IFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDE 678 (1099)
Q Consensus 600 GI~~e~l~~-IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~ 678 (1099)
||+.+.... +|..|-+++.+.++..+|+|+|+.||+.++++|+|.+.+.+.. ..|++|+|.+++..... ....
T Consensus 424 ~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~--~~~~t~~~~~~~~~~~~----~~~~ 497 (786)
T KOG0519|consen 424 EIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCI--SLGKTFSFTLDLLTNLP----KSVV 497 (786)
T ss_pred eEehhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhh--ccCceeeEEEEeccCCC----ccch
Confidence 999999888 9999999999888888999999999999999999999997655 36888888887743111 0000
Q ss_pred CCCCCCCCCCCcccccchhhhcccccccCCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCC
Q 001330 679 EDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDP 758 (1099)
Q Consensus 679 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~ 758 (1099)
.+ +.+ . .+.+....|........ ..+.
T Consensus 498 ~~--------------------------------------~~~-~-~~~~~~~~G~~~~~~~~-------------~~~~ 524 (786)
T KOG0519|consen 498 GD--------------------------------------EKR-L-FQIILDFNGMLALLIDT-------------KLGR 524 (786)
T ss_pred hh--------------------------------------hhh-h-hhhhhhhcchhhhhhcc-------------ccCc
Confidence 00 000 0 00011111111000000 0000
Q ss_pred CCcccCCCCCcccccccccccCCCCCCCCcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhc
Q 001330 759 SSIGYAEKPESSLVDSLTMSASSSSDTGHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANF 838 (1099)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~ 838 (1099)
..+ +.........+.+... .. +. +.+
T Consensus 525 ~~~----------~~~~~~~~~~~vd~~~-~~--------------~~-----------------------------~~~ 550 (786)
T KOG0519|consen 525 EQI----------FQVLAELLGISVDVSL-SL--------------SL-----------------------------AFW 550 (786)
T ss_pred cee----------EEEEecccCccccccc-cc--------------hh-----------------------------hhh
Confidence 000 0000000000000000 00 00 000
Q ss_pred cccCCCCcceEEEeccchhcccccccccccCccccccccCCCcchHHHHHhh-cccccCCcccCCcccccc-cchhhhcc
Q 001330 839 KRDVPSLSCKVVWIDNSVIRNAHSREYRLLPICDHVISRPFHGSRLIEVLKL-LPECKGASQRNFPKLKME-ASSQELQH 916 (1099)
Q Consensus 839 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~L~~~l~~-l~~~~~~~~~~~~~~~~~-~~~~~~~~ 916 (1099)
........+.+.+...........++ .-..-|++........+. .+. .......+..... .-..-+..
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 620 (786)
T KOG0519|consen 551 FLDLSLSDLEVCKQIEDNEEGSNNGD--------ISSSNPLHKSLRDLTSKLSSGS--GLSLALCPENSQLMEGNIGLVP 620 (786)
T ss_pred hcccccccchheEEeeeccccccCCC--------cchhhhhhhccccchhhccccc--ccccccchhhHHhhhccccccc
Confidence 00000000000110000000000000 000001111000000000 000 0000000000000 00000000
Q ss_pred cCCCCCcccccccccccccccccccchhhhhhhccCCCCCCCCCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHH
Q 001330 917 CTDPNPLNKLKSFGAEAGASISSHCSSLQQVAAQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGK 996 (1099)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~ 996 (1099)
+....+...................+.....+.........+.++|.+|||||||..++++.+.+|+++|++++.+.+|.
T Consensus 621 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~ 700 (786)
T KOG0519|consen 621 SSDGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQ 700 (786)
T ss_pred ccccCCccHHHHHHhhccccccccccccCCCcccccCccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcH
Confidence 00000000000000000000000000000000000111134456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEE
Q 001330 997 EAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076 (1099)
Q Consensus 997 eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL 1076 (1099)
||++++. ....||+||||++||+|||+|++++||+.+. .++|||||||+...+..++|++.|||+||
T Consensus 701 e~l~~~~----------~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~---~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl 767 (786)
T KOG0519|consen 701 EALDKLK----------PPHSYDVIFMDLQMPEMDGYEATREIRKKER---WHLPIVALTADADPSTEEECLEVGMDGYL 767 (786)
T ss_pred HHHHhcC----------CCCcccEEEEEcCCcccchHHHHHHHHHhhc---CCCCEEEEecCCcHHHHHHHHHhCCceEE
Confidence 9999984 2568999999999999999999999998765 57999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHH
Q 001330 1077 TKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1077 ~KPi~~~~L~~~l~~i~~ 1094 (1099)
.|||+.+.|...+++++.
T Consensus 768 ~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 768 SKPFTLEKLVKILREFLL 785 (786)
T ss_pred cccccHHHHHHHHHHHhc
Confidence 999999999999998764
No 12
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-37 Score=365.34 Aligned_cols=223 Identities=26% Similarity=0.408 Sum_probs=192.3
Q ss_pred HHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEE
Q 001330 390 KSMNKTFALAKASHDVRASLAAIIGLVELCHEDA--NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEE 467 (1099)
Q Consensus 390 ~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~--~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~ 467 (1099)
..+.++.+|+++|||||||||+|.|.++.|.... .++++..+.+..|++++++|.++|++|||++|+++|.++++.++
T Consensus 656 ~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~~~ 735 (890)
T COG2205 656 RERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKLDW 735 (890)
T ss_pred HHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccch
Confidence 3456788999999999999999999999987543 34455788999999999999999999999999999999999999
Q ss_pred ecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCe-EEEEEEEeccccc
Q 001330 468 FNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGH-ISVRAAVKKKSFK 546 (1099)
Q Consensus 468 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~-I~v~~~~~~~~~~ 546 (1099)
..+.++|.+++.........+.+.+.+ +++. ..+.+|...|.|||.|||+||+||++.|. |.+.++...+
T Consensus 736 ~~veEvVg~Al~r~~k~~~~~~i~v~~--~~dl----~li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~~--- 806 (890)
T COG2205 736 VLVEEVVGEALQRLRKRFTGHKIVVSV--PVDL----PLIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVERE--- 806 (890)
T ss_pred hhHHHHHHHHHHHhhhhcCCceEEEec--CCCC----ceEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEecc---
Confidence 999999999999877766555554444 3332 36899999999999999999999999875 8887765443
Q ss_pred hhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCC
Q 001330 547 QDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEG 626 (1099)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~G 626 (1099)
.+.|+|.|+|+|||++++++||++||+.++... ..|
T Consensus 807 ------------------------------------------~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~--~~G 842 (890)
T COG2205 807 ------------------------------------------NVVFSVIDEGPGIPEGELERIFDKFYRGNKESA--TRG 842 (890)
T ss_pred ------------------------------------------eEEEEEEeCCCCCChhHHHHhhhhhhcCCCCCC--CCC
Confidence 588999999999999999999999999987443 579
Q ss_pred ccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 627 LGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 627 tGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
+||||+|||.||+.|||+|++++..+ .|+||+|.+|.+.
T Consensus 843 ~GLGLsIc~~iv~ahgG~I~a~~~~~--gGa~f~~~LP~~~ 881 (890)
T COG2205 843 VGLGLAICRGIVEAHGGTISAENNPG--GGAIFVFTLPVEE 881 (890)
T ss_pred ccccHHHHHHHHHHcCCeEEEEEcCC--CceEEEEEeecCC
Confidence 99999999999999999999988553 5999999999864
No 13
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=4.3e-34 Score=347.97 Aligned_cols=366 Identities=20% Similarity=0.267 Sum_probs=278.2
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHhcCC----CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecH
Q 001330 395 TFALAKASHDVRASLAAIIGLVELCHEDA----NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNL 470 (1099)
Q Consensus 395 ~~fla~~SHELRTPLt~I~g~~ell~~~~----~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL 470 (1099)
..+++.++||+|+||+.|.|+++++.... .......+.++.|...++++..++++++++++.. .+....+++
T Consensus 164 ~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~~l 239 (540)
T PRK13557 164 GQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVLNL 239 (540)
T ss_pred hhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCcccCH
Confidence 34678899999999999999999875422 1234567889999999999999999999999843 344577899
Q ss_pred HHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC-eEEEEEEEeccccchhh
Q 001330 471 AQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG-HISVRAAVKKKSFKQDI 549 (1099)
Q Consensus 471 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~ 549 (1099)
.++++.+...+.. ...+++.+.+..++.. ..+.+|+.++.|++.||+.||+||++.| .|.+...........
T Consensus 240 ~~~i~~~~~~~~~-~~~~~~~i~~~~~~~~----~~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~-- 312 (540)
T PRK13557 240 NGLVSGMGELAER-TLGDAVTIETDLAPDL----WNCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDED-- 312 (540)
T ss_pred HHHHHHHHHHHHH-hcCCCeEEEEecCCCC----CceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccc--
Confidence 9999988776553 3456777776654332 2478899999999999999999999765 454443221110000
Q ss_pred hhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccc
Q 001330 550 IASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629 (1099)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGL 629 (1099)
. ...........+.|+|.|+|+|||++.++++|++||+.+.. .+|+||
T Consensus 313 ---------------------------~-~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~----~~g~Gl 360 (540)
T PRK13557 313 ---------------------------L-AMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEE----GKGTGL 360 (540)
T ss_pred ---------------------------c-ccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCC----CCCCCc
Confidence 0 00000011235789999999999999999999999987542 359999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecccccccCCCCCCCCCCCCCCCCCCcccccchhhhcccccccCCC
Q 001330 630 GLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGS 709 (1099)
Q Consensus 630 GLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~ 709 (1099)
||+|||++++.|||+|++.+.. |.|++|+|.+|...... ...
T Consensus 361 GL~i~~~~v~~~gG~i~~~s~~--~~G~~f~i~lP~~~~~~-------~~~----------------------------- 402 (540)
T PRK13557 361 GLSMVYGFAKQSGGAVRIYSEV--GEGTTVRLYFPASDQAE-------NPE----------------------------- 402 (540)
T ss_pred cHHHHHHHHHHCCCEEEEEecC--CCceEEEEEeeCCCCcc-------CCC-----------------------------
Confidence 9999999999999999998765 36999999887632000 000
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
+. ..
T Consensus 403 --------------------------------------------------~~----------~~---------------- 406 (540)
T PRK13557 403 --------------------------------------------------QE----------PK---------------- 406 (540)
T ss_pred --------------------------------------------------CC----------CC----------------
Confidence 00 00
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
. .
T Consensus 407 -------------------------------------------------------~-----------------~------ 408 (540)
T PRK13557 407 -------------------------------------------------------A-----------------R------ 408 (540)
T ss_pred -------------------------------------------------------C-----------------c------
Confidence 0 0
Q ss_pred ccccccccCCCcchHHHHHhhcccccCCcccCCcccccccchhhhcccCCCCCcccccccccccccccccccchhhhhhh
Q 001330 870 ICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVAA 949 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1099)
T Consensus 409 -------------------------------------------------------------------------------- 408 (540)
T PRK13557 409 -------------------------------------------------------------------------------- 408 (540)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC
Q 001330 950 QSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV 1029 (1099)
Q Consensus 950 ~~~~~~~~~~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1029 (1099)
......+++||++||++..+..+..+|+..|+.+..+.++.+|++.+.. ...||+|++|..||+
T Consensus 409 ------~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~----------~~~~d~vi~d~~~~~ 472 (540)
T PRK13557 409 ------AIDRGGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDS----------HPEVDLLFTDLIMPG 472 (540)
T ss_pred ------ccccCCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhc----------CCCceEEEEeccCCC
Confidence 0000123579999999999999999999999999999999999988732 235999999999997
Q ss_pred -CCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1030 -MNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1030 -mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
++|+++++.||+.. +.+|||++|..........++..|+++|+.||++.++|...++.+++.
T Consensus 473 ~~~~~~~~~~l~~~~----~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 535 (540)
T PRK13557 473 GMNGVMLAREARRRQ----PKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDG 535 (540)
T ss_pred CCCHHHHHHHHHHhC----CCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcC
Confidence 99999999999642 358999999998888888899999999999999999999999987653
No 14
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=2.6e-34 Score=335.89 Aligned_cols=230 Identities=23% Similarity=0.375 Sum_probs=194.8
Q ss_pred HHHHHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001330 384 TEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANP------GTDLAENLGLIRTCSKDLLGILNSVMEMSKIE 457 (1099)
Q Consensus 384 ~~~ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~------~~~~~~~l~~I~~~~~~L~~LIndlLdlskie 457 (1099)
.++.++....+..|++.+||||||||++|.++++++...... .+..+++++.+..++++|..++++++++++.+
T Consensus 141 ~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~~~~~~ 220 (380)
T PRK09303 141 NETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLEVGRTR 220 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444556688999999999999999999999998743322 12367788999999999999999999999999
Q ss_pred cCCCcceEEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC-eEEE
Q 001330 458 AGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG-HISV 536 (1099)
Q Consensus 458 ~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v 536 (1099)
.+...++.+++++.+++++++..+...+..+++.+.++.+... ..+.+|+.+|.||+.|||+||+||++.| .|.+
T Consensus 221 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~----~~v~~d~~~l~qvl~NLl~NAik~~~~~~~I~i 296 (380)
T PRK09303 221 WEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDL----PSVYADQERIRQVLLNLLDNAIKYTPEGGTITL 296 (380)
T ss_pred cCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCC----CeEEeCHHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 9999999999999999999999999999999999998865432 2589999999999999999999999875 5666
Q ss_pred EEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccc
Q 001330 537 RAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQV 616 (1099)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~ 616 (1099)
.+..... ..+.|+|.|+|+|||++.+++||+|||+.
T Consensus 297 ~~~~~~~--------------------------------------------~~v~i~V~D~G~GI~~~~~~~iF~pf~~~ 332 (380)
T PRK09303 297 SMLHRTT--------------------------------------------QKVQVSICDTGPGIPEEEQERIFEDRVRL 332 (380)
T ss_pred EEEecCC--------------------------------------------CEEEEEEEEcCCCCCHHHHHHHccCceeC
Confidence 5432111 15789999999999999999999999998
Q ss_pred cccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 617 KETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 617 d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
+.. +..+|+||||+|||++|+.|||+|++.+.+ +.|++|+|.+|.
T Consensus 333 ~~~--~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~--~~Gt~f~i~lP~ 377 (380)
T PRK09303 333 PRD--EGTEGYGIGLSVCRRIVRVHYGQIWVDSEP--GQGSCFHFTLPV 377 (380)
T ss_pred CCC--CCCCcccccHHHHHHHHHHcCCEEEEEecC--CCccEEEEEEec
Confidence 762 345799999999999999999999998765 359999999986
No 15
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=100.00 E-value=9.2e-32 Score=336.16 Aligned_cols=220 Identities=24% Similarity=0.350 Sum_probs=186.6
Q ss_pred HhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHH
Q 001330 392 MNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLA 471 (1099)
Q Consensus 392 ~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~ 471 (1099)
.....+.+.+|||+||||+.|.++++.+.... ...+..++++.+..+++++..++++++++++++.+......+++++.
T Consensus 483 ~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~-~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~~~~~~~~~dl~ 561 (703)
T TIGR03785 483 HYLENMSSRLSHELRTPVAVVRSSLENLELQA-LEQEKQKYLERAREGTERLSMILNNMSEATRLEQAIQSAEVEDFDLS 561 (703)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeecHH
Confidence 34456788999999999999999999986543 34556778999999999999999999999999998888888999999
Q ss_pred HHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC-eEEEEEEEeccccchhhh
Q 001330 472 QLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG-HISVRAAVKKKSFKQDII 550 (1099)
Q Consensus 472 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~~ 550 (1099)
+++++++..+...+..+++.+.++.+ ...+.+|+..|.|++.|||+||+||+++| .|.|.+...+
T Consensus 562 ~ll~~~i~~~~~~~~~~~i~l~i~~~------~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~~~-------- 627 (703)
T TIGR03785 562 EVLSGCMQGYQMTYPPQRFELNIPET------PLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQNK-------- 627 (703)
T ss_pred HHHHHHHHHHHHHhhcCCEEEEecCC------CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEEcC--------
Confidence 99999999999998888888877532 23689999999999999999999999765 4666543221
Q ss_pred hccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCcccc
Q 001330 551 ASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLG 630 (1099)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLG 630 (1099)
..+.|+|.|+|+||+++.+++||+|||+.+..+....+|+|||
T Consensus 628 -------------------------------------~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLG 670 (703)
T TIGR03785 628 -------------------------------------SHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLG 670 (703)
T ss_pred -------------------------------------CEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHH
Confidence 1578999999999999999999999999876554445689999
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEe
Q 001330 631 LGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664 (1099)
Q Consensus 631 LaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~ 664 (1099)
|+|||+|++.|||+|.+.+..+ +.|++|++.+|
T Consensus 671 L~Ivr~Iv~~~gG~I~v~s~~~-g~Gt~f~I~LP 703 (703)
T TIGR03785 671 LYIVRLIADFHQGRIQAENRQQ-NDGVVFRISLP 703 (703)
T ss_pred HHHHHHHHHHcCCEEEEEECCC-CCeEEEEEEeC
Confidence 9999999999999999987654 36999999886
No 16
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=1.4e-31 Score=318.32 Aligned_cols=218 Identities=21% Similarity=0.290 Sum_probs=184.5
Q ss_pred HHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEec
Q 001330 390 KSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFN 469 (1099)
Q Consensus 390 ~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~d 469 (1099)
....+.++++++||||||||++|.+.++++... ..++ .+.+.+..+++..++++++.++|++.+...+..++++
T Consensus 208 ~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~--~~~~----~~~i~~~~~~l~~li~~ll~~~rl~~~~~~~~~~~~~ 281 (433)
T PRK10604 208 LIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL--SAAE----SQALNRDIGQLEALIEELLTYARLDRPQNELHLSEPD 281 (433)
T ss_pred HHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCC--CcHH----HHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCC
Confidence 334567789999999999999999999988532 2222 1337888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhh
Q 001330 470 LAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDI 549 (1099)
Q Consensus 470 L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~ 549 (1099)
+.+++++++..+......+++++.++.+ ...+.+|+..+.|++.||++||+||+. |.|.|++...++
T Consensus 282 l~~~l~~~i~~~~~~~~~~~i~~~~~~~------~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~~~~~~------ 348 (433)
T PRK10604 282 LPAWLSTHLADIQAVTPEKTVRLDTPHQ------GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVSLLLDGN------ 348 (433)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEecCC------CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEECC------
Confidence 9999999999998888888888776532 234678999999999999999999985 677776643321
Q ss_pred hhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccc
Q 001330 550 IASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629 (1099)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGL 629 (1099)
.+.|+|.|+|+|||++++++||+||||.+.++.+..+|+||
T Consensus 349 ---------------------------------------~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GL 389 (433)
T PRK10604 349 ---------------------------------------QACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGL 389 (433)
T ss_pred ---------------------------------------EEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccc
Confidence 47899999999999999999999999999887777789999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 630 GLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 630 GLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
||+|||++++.|||+|.+++.+ +.|++|++.+|...
T Consensus 390 GL~ivk~i~~~~gG~i~v~s~~--~~G~~f~i~lP~~~ 425 (433)
T PRK10604 390 GLAIVHSIALAMGGSVNCDESE--LGGARFSFSWPVWH 425 (433)
T ss_pred hHHHHHHHHHHCCCEEEEEecC--CCeeEEEEEEeCCC
Confidence 9999999999999999998775 35999999998754
No 17
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=4.8e-32 Score=322.16 Aligned_cols=221 Identities=24% Similarity=0.384 Sum_probs=186.6
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHH
Q 001330 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473 (1099)
Q Consensus 394 k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~l 473 (1099)
+..|++++||||||||++|.|+++++.......+...++++.|.+++++|..+++++++++|++.+......+.+++..+
T Consensus 204 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~~ 283 (430)
T PRK11006 204 RRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPMM 283 (430)
T ss_pred HHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHHH
Confidence 44689999999999999999999998765445566778899999999999999999999999999877777788999999
Q ss_pred HHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC-eEEEEEEEeccccchhhhhc
Q 001330 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG-HISVRAAVKKKSFKQDIIAS 552 (1099)
Q Consensus 474 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~~~~ 552 (1099)
++.+...+.... .+++.+.++.++. ..+.+|+.+|.||+.||++||+||+++| .|.+.+....
T Consensus 284 ~~~l~~~~~~~~-~~~~~i~~~~~~~-----~~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~---------- 347 (430)
T PRK11006 284 LRVLEREAQTLS-QGKHTITFEVDNS-----LKVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVP---------- 347 (430)
T ss_pred HHHHHHHHHHHh-cCCcEEEEecCCC-----ceEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcC----------
Confidence 998887776554 6777777765432 3588999999999999999999999875 4666543211
Q ss_pred cccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHH
Q 001330 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632 (1099)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 632 (1099)
..+.|+|.|+|+|||++.+++||+|||+.+.++++..+|+||||+
T Consensus 348 -----------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ 392 (430)
T PRK11006 348 -----------------------------------QGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLA 392 (430)
T ss_pred -----------------------------------CEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHH
Confidence 147899999999999999999999999998876666689999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 633 Ivk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
|||++++.|||+|++++.+ +.|++|+|.+|...
T Consensus 393 ivk~iv~~~gG~i~i~s~~--~~Gt~f~i~lP~~~ 425 (430)
T PRK11006 393 IVKHALSHHDSRLEIESEV--GKGTRFSFVLPERL 425 (430)
T ss_pred HHHHHHHHCCCEEEEEecC--CCceEEEEEechHh
Confidence 9999999999999998765 35999999998643
No 18
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-30 Score=299.35 Aligned_cols=208 Identities=25% Similarity=0.392 Sum_probs=176.1
Q ss_pred HHHhHHHhHHHHHHHHHHHHHH---hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHH
Q 001330 398 LAKASHDVRASLAAIIGLVELC---HEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLL 474 (1099)
Q Consensus 398 la~~SHELRTPLt~I~g~~ell---~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll 474 (1099)
-+.+||||++||++|.+|++-. .+.. ..++..+++..|..-++||-.|..+|-.|++--... .+++.+.+.|
T Consensus 388 SA~iaHElNQPLaaiRt~adna~~lLerg-r~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l~~ai 462 (603)
T COG4191 388 SAGIAHELNQPLAAIRTYADNARLLLERG-RTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSLREAI 462 (603)
T ss_pred HHHHHHHhcCcHHHHHhHHHHHHHHHHcC-ChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccHHHHH
Confidence 4678999999999999999843 3332 345678999999999999999999999999854333 5789999999
Q ss_pred HHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccC---CCeEEEEEEEeccccchhhhh
Q 001330 475 EEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTS---EGHISVRAAVKKKSFKQDIIA 551 (1099)
Q Consensus 475 ~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~---~G~I~v~~~~~~~~~~~~~~~ 551 (1099)
++++.+++...+..++.+..+.++. ++.|.+|+.||+|||.|||+||+..+. ++.|.|++...+.
T Consensus 463 ~~Al~ll~~R~~~~~~~l~~~~~~~----~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~-------- 530 (603)
T COG4191 463 EGALELLRGRLRAAGVELELDLPDA----PLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGG-------- 530 (603)
T ss_pred HHHHHHHHHhhhccCceeeccCCCC----CceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCC--------
Confidence 9999999999999999998876543 458999999999999999999999974 4677776643322
Q ss_pred ccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccH
Q 001330 552 SNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631 (1099)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGL 631 (1099)
.+.++|.||||||++|-+.++||||+++++. +.|.||||
T Consensus 531 -------------------------------------~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~----~~GLGLGL 569 (603)
T COG4191 531 -------------------------------------QVVLTVRDNGPGIAPEALPHLFEPFFTTKPV----GKGLGLGL 569 (603)
T ss_pred -------------------------------------eEEEEEccCCCCCCHHHHHhhcCCccccCcc----cCCcchhH
Confidence 5889999999999999999999999998753 36999999
Q ss_pred HHHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 632 GIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 632 aIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
+||++|++-|||+|.+.+.+ +.|+.|++.++.
T Consensus 570 aIS~~i~~d~GGsL~v~n~~--~~Ga~F~i~L~~ 601 (603)
T COG4191 570 AISQNIARDLGGSLEVANHP--EGGASFTIELRR 601 (603)
T ss_pred HHHHHHHHHhCCeEEeecCC--CCceEEEEEeec
Confidence 99999999999999998654 359999998864
No 19
>PRK09835 sensor kinase CusS; Provisional
Probab=100.00 E-value=3.5e-30 Score=309.95 Aligned_cols=221 Identities=22% Similarity=0.401 Sum_probs=188.8
Q ss_pred HHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecH
Q 001330 391 SMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNL 470 (1099)
Q Consensus 391 ~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL 470 (1099)
...+..|++++||||||||+.|.+.++.+........+..+.+..+..+..++..++++++++++.+.+......+++++
T Consensus 259 ~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~l 338 (482)
T PRK09835 259 FTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLDL 338 (482)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeecH
Confidence 34456789999999999999999999987655544455667777888889999999999999999999988888899999
Q ss_pred HHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC-eEEEEEEEeccccchhh
Q 001330 471 AQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG-HISVRAAVKKKSFKQDI 549 (1099)
Q Consensus 471 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~ 549 (1099)
.+++++++..+...+.++++.+.++.. ...+.+|+.+|.||+.||++||+||+++| .|.|++...+.
T Consensus 339 ~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~~~~------ 406 (482)
T PRK09835 339 ADEVGKVFDFFEAWAEERGVELRFVGD------PCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQEVDH------ 406 (482)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeCC------CcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCC------
Confidence 999999999999998899998887531 23688999999999999999999999765 47666533211
Q ss_pred hhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccc
Q 001330 550 IASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629 (1099)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGL 629 (1099)
.+.|+|.|+|+|||++.++++|+|||+.+.++....+|+||
T Consensus 407 ---------------------------------------~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~Gl 447 (482)
T PRK09835 407 ---------------------------------------QVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGI 447 (482)
T ss_pred ---------------------------------------EEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcch
Confidence 47899999999999999999999999998877666679999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 630 GLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 630 GLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
||+|||++++.|||+|++++. + .|++|++.+|.
T Consensus 448 GL~i~~~i~~~~~g~i~~~s~-~--~g~~~~i~lP~ 480 (482)
T PRK09835 448 GLAIVKSIVVAHKGTVAVTSD-A--RGTRFVISLPR 480 (482)
T ss_pred HHHHHHHHHHHCCCEEEEEEC-C--CcEEEEEEeeC
Confidence 999999999999999999764 2 48999998874
No 20
>PRK10364 sensor protein ZraS; Provisional
Probab=100.00 E-value=4.1e-30 Score=307.98 Aligned_cols=212 Identities=25% Similarity=0.413 Sum_probs=180.4
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHH
Q 001330 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473 (1099)
Q Consensus 394 k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~l 473 (1099)
...+.+++||||||||++|.|+++++.+......+.++.++.|.++++++..++++++++++.. .....++++.++
T Consensus 237 ~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~~~ 312 (457)
T PRK10364 237 LGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLNDL 312 (457)
T ss_pred HHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHHHH
Confidence 3457889999999999999999999876555556677888999999999999999999999843 445678999999
Q ss_pred HHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC-CeEEEEEEEeccccchhhhhc
Q 001330 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE-GHISVRAAVKKKSFKQDIIAS 552 (1099)
Q Consensus 474 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~~ 552 (1099)
+++++..+...+.++++.+.++.+... ..+.+|+.+|.|++.||++||+||+.. |.|.+.+.....
T Consensus 313 l~~~~~~~~~~~~~~~i~l~~~~~~~~----~~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~--------- 379 (457)
T PRK10364 313 INHSLQLVSQDANSREIQLRFTANDTL----PEIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESGA--------- 379 (457)
T ss_pred HHHHHHHHHHHHHhcCeEEEEEcCCCC----ceEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCC---------
Confidence 999999999999999999998865432 257889999999999999999999865 567666543211
Q ss_pred cccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHH
Q 001330 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632 (1099)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 632 (1099)
.+.|+|.|+|+|||++.++++|++||+.+ .+|+||||+
T Consensus 380 ------------------------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~k------~~g~GlGL~ 417 (457)
T PRK10364 380 ------------------------------------GVKISVTDSGKGIAADQLEAIFTPYFTTK------AEGTGLGLA 417 (457)
T ss_pred ------------------------------------eEEEEEEECCCCCCHHHHHHHhCccccCC------CCCCcccHH
Confidence 47899999999999999999999999653 258999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 633 Ivk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
|||++++.|||+|++.+.+ +.|++|++.+|+.
T Consensus 418 iv~~~v~~~gG~i~i~s~~--~~Gt~f~i~lP~~ 449 (457)
T PRK10364 418 VVHNIVEQHGGTIQVASQE--GKGATFTLWLPVN 449 (457)
T ss_pred HHHHHHHHCCCEEEEEeCC--CCcEEEEEEecCC
Confidence 9999999999999998765 3599999999874
No 21
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.98 E-value=4.2e-30 Score=309.28 Aligned_cols=215 Identities=18% Similarity=0.305 Sum_probs=180.8
Q ss_pred hHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHH
Q 001330 393 NKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQ 472 (1099)
Q Consensus 393 ~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ 472 (1099)
....|++++||||||||++|.++++.+....... ..+....+.++..++..+++++++.++.+++...+..+.+++.+
T Consensus 265 ~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~--~~~~~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~~~~~l~~ 342 (485)
T PRK10815 265 KYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMS--VEQAEPIMLEQISRISQQIGYYLHRASMRSEHNLLSRELHSVAP 342 (485)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccceecHHH
Confidence 3456899999999999999999999987654332 23344567788899999999999999999998888899999999
Q ss_pred HHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhc
Q 001330 473 LLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552 (1099)
Q Consensus 473 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~ 552 (1099)
++++++..+...+..+++++.++.+.. ..+.+|+..+.||+.||++||+||+++ .+.|.+...+
T Consensus 343 ll~~~~~~l~~~~~~~~i~i~~~~~~~-----~~v~~d~~~l~~vl~NLi~NAik~~~~-~i~I~~~~~~---------- 406 (485)
T PRK10815 343 LLDNLTSALNKVYQRKGVNITLDISPE-----ITFVGEKNDFMEVMGNVLDNACKYCLE-FVEISARQTD---------- 406 (485)
T ss_pred HHHHHHHHHHHHHHHCCcEEEEecCCC-----cEEEeCHHHHHHHHHHHHHHHHHhcCC-cEEEEEEEeC----------
Confidence 999999999999999999999876432 357899999999999999999999965 3555443211
Q ss_pred cccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHH
Q 001330 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632 (1099)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 632 (1099)
..+.|+|.|+|+|||++++++||+||++.+.. .+|+||||+
T Consensus 407 -----------------------------------~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~----~~G~GLGL~ 447 (485)
T PRK10815 407 -----------------------------------EHLHIVVEDDGPGIPESKRELIFDRGQRADTL----RPGQGLGLS 447 (485)
T ss_pred -----------------------------------CEEEEEEEECCCCcCHHHHHHHhCCcccCCCC----CCCcchhHH
Confidence 15789999999999999999999999987643 259999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 633 Ivk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
|||++++.|||+|.+++.++ .|++|++.+|..
T Consensus 448 Ivk~iv~~~gG~i~v~s~~~--~Gt~f~i~lp~~ 479 (485)
T PRK10815 448 VAREITEQYEGKISAGDSPL--GGARMEVIFGRQ 479 (485)
T ss_pred HHHHHHHHcCCEEEEEECCC--CEEEEEEEEcCC
Confidence 99999999999999987653 599999998764
No 22
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.97 E-value=1.4e-29 Score=303.45 Aligned_cols=224 Identities=22% Similarity=0.358 Sum_probs=191.9
Q ss_pred HHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEec
Q 001330 390 KSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFN 469 (1099)
Q Consensus 390 ~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~d 469 (1099)
....+..+++++||||||||+.|.+.++.+.+..... ..+.+..+...+.++..++++++++++.+.+...+..++++
T Consensus 236 ~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~~~--~~~~l~~~~~~~~~l~~li~~l~~l~~~~~~~~~~~~~~~~ 313 (466)
T PRK10549 236 NEQMRRDFMADISHELRTPLAVLRGELEAIQDGVRKF--TPESVASLQAEVGTLTKLVDDLHQLSLSDEGALAYRKTPVD 313 (466)
T ss_pred HHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCC
Confidence 3345667899999999999999999999987643322 24567888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC-CeEEEEEEEeccccchh
Q 001330 470 LAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE-GHISVRAAVKKKSFKQD 548 (1099)
Q Consensus 470 L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~ 548 (1099)
+.+++++++..++..+..+++++.++.++ ...+.+|+.++.|++.|||+||+||+++ |.|.|.+...+
T Consensus 314 ~~~~l~~~~~~~~~~~~~~~i~i~~~~~~-----~~~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~~~------ 382 (466)
T PRK10549 314 LVPLLEVAGGAFRERFASRGLTLQLSLPD-----SATVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQRD------ 382 (466)
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEEecCC-----CcEEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcC------
Confidence 99999999999999999999999887643 2357799999999999999999999976 46666653321
Q ss_pred hhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCcc
Q 001330 549 IIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLG 628 (1099)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtG 628 (1099)
..+.|+|.|+|+|||++++++||+|||+.+.++.+..+|+|
T Consensus 383 ---------------------------------------~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~G 423 (466)
T PRK10549 383 ---------------------------------------KTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSG 423 (466)
T ss_pred ---------------------------------------CEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCc
Confidence 15789999999999999999999999999887666667999
Q ss_pred ccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 629 LGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 629 LGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
|||+||+++++.|||++++++..+ .|++|+|.+|+..
T Consensus 424 lGL~iv~~i~~~~~G~l~~~s~~~--~G~~~~i~lP~~~ 460 (466)
T PRK10549 424 LGLAICLNIVEAHNGRIIAAHSPF--GGVSITVELPLER 460 (466)
T ss_pred HHHHHHHHHHHHcCCEEEEEECCC--CeEEEEEEccCCC
Confidence 999999999999999999987653 4999999998753
No 23
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.97 E-value=4.7e-29 Score=298.22 Aligned_cols=218 Identities=24% Similarity=0.384 Sum_probs=182.2
Q ss_pred HhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHH
Q 001330 392 MNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLA 471 (1099)
Q Consensus 392 ~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~ 471 (1099)
..+..|++++||||||||++|.+..+++...... ...+..+...+++|..+++++++++|.+... .+..+.+++.
T Consensus 241 ~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~----~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~-~~~~~~~~l~ 315 (461)
T PRK09470 241 TSQQRLLSDISHELRTPLTRLQLATALLRRRQGE----SKELERIETEAQRLDSMINDLLVLSRNQQKN-HLERETFKAN 315 (461)
T ss_pred HHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCC----hHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccccceecHH
Confidence 3455689999999999999999999987643322 2346778889999999999999999987653 5677899999
Q ss_pred HHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhh
Q 001330 472 QLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIA 551 (1099)
Q Consensus 472 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~ 551 (1099)
+++++++..+...+..+++.+.++... ....+.+|+..|.|++.||++||+||++ +.|.|++...+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i~i~~~~~~~-------- 382 (461)
T PRK09470 316 SLWSEVLEDAKFEAEQMGKSLTVSAPP----GPWPINGNPNALASALENIVRNALRYSH-TKIEVAFSVDKD-------- 382 (461)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEecCC----cceEEEECHHHHHHHHHHHHHHHHHhCC-CcEEEEEEEECC--------
Confidence 999999999888888889988887322 2347899999999999999999999986 556666543221
Q ss_pred ccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccH
Q 001330 552 SNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631 (1099)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGL 631 (1099)
.+.|+|.|+|+||++++++++|+|||+.+..+.+..+|+||||
T Consensus 383 -------------------------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL 425 (461)
T PRK09470 383 -------------------------------------GLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGL 425 (461)
T ss_pred -------------------------------------EEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhH
Confidence 4789999999999999999999999999877666667999999
Q ss_pred HHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 632 GIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 632 aIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
+||+++|+.|||++.+.+.++ .|++|++.+|+.
T Consensus 426 ~iv~~~v~~~~G~l~~~s~~~--~Gt~~~i~lp~~ 458 (461)
T PRK09470 426 AIVENAIQQHRGWVKAEDSPL--GGLRLTIWLPLY 458 (461)
T ss_pred HHHHHHHHHCCCEEEEEECCC--CeEEEEEEeeCC
Confidence 999999999999999987653 499999999874
No 24
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.97 E-value=1.7e-29 Score=301.23 Aligned_cols=216 Identities=23% Similarity=0.417 Sum_probs=187.9
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHH
Q 001330 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473 (1099)
Q Consensus 394 k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~l 473 (1099)
...+.+++||||||||+++.++++.+........+..+.++.+.....++..++++++.+++++........+++++.++
T Consensus 241 ~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T TIGR01386 241 LSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADNGQLALERVRLDLAAE 320 (457)
T ss_pred HHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCHHHH
Confidence 44578899999999999999999987655555556678888889999999999999999999999988889999999999
Q ss_pred HHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC-CeEEEEEEEeccccchhhhhc
Q 001330 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE-GHISVRAAVKKKSFKQDIIAS 552 (1099)
Q Consensus 474 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~~ 552 (1099)
+++++..+...+.++++.+.++.. ..+.+|+..|.+++.||++||+||+++ |.|.+++...+.
T Consensus 321 ~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~~~~~--------- 384 (457)
T TIGR01386 321 LAKVAEYFEPLAEERGVRIRVEGE-------GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIERRSD--------- 384 (457)
T ss_pred HHHHHHHHHHHHHhCCeEEEecCC-------ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEEecCC---------
Confidence 999999999999999988877631 368999999999999999999999976 467776543211
Q ss_pred cccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHH
Q 001330 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632 (1099)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 632 (1099)
.+.|+|.|+|+|||++.++++|++||+.+.++....+|+||||+
T Consensus 385 ------------------------------------~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~ 428 (457)
T TIGR01386 385 ------------------------------------EVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLA 428 (457)
T ss_pred ------------------------------------EEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHH
Confidence 57899999999999999999999999999877666789999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEEEEEEEe
Q 001330 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664 (1099)
Q Consensus 633 Ivk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~ 664 (1099)
|||++++.|||+|++.+ + +.|++|++.+|
T Consensus 429 i~~~~~~~~~G~~~~~~-~--~~G~~~~~~~P 457 (457)
T TIGR01386 429 IVRSIMEAHGGRASAES-P--DGKTRFILRFP 457 (457)
T ss_pred HHHHHHHHCCCEEEEEe-C--CCceEEEEecC
Confidence 99999999999999987 4 35999998876
No 25
>PRK10337 sensor protein QseC; Provisional
Probab=99.97 E-value=4.8e-29 Score=297.69 Aligned_cols=213 Identities=21% Similarity=0.317 Sum_probs=179.2
Q ss_pred HhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHH
Q 001330 392 MNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLA 471 (1099)
Q Consensus 392 ~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~ 471 (1099)
..+.+|+++++|||||||+.+.+.++.+.......+...+++..+...++++..++++++.++|++.+......+++++.
T Consensus 235 ~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~~~~~~~~~~~~l~ 314 (449)
T PRK10337 235 VRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLE 314 (449)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCHH
Confidence 34456899999999999999999999876544444455678999999999999999999999999988776677899999
Q ss_pred HHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC-eEEEEEEEeccccchhhh
Q 001330 472 QLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG-HISVRAAVKKKSFKQDII 550 (1099)
Q Consensus 472 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~~ 550 (1099)
+++++++..+...+..+++.+.++.++. ...+.+|+..+.+++.||++||+||+++| .|.+.+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~----------- 379 (449)
T PRK10337 315 DLLQSAVMDIYHTAQQAGIDVRLTLNAH----PVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLN----------- 379 (449)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecCCC----CceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEE-----------
Confidence 9999999999999999999999876432 23578999999999999999999999875 4555431
Q ss_pred hccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCcccc
Q 001330 551 ASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLG 630 (1099)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLG 630 (1099)
...++|.|+|+|||++++++||+|||+.+.. ..+|+|||
T Consensus 380 --------------------------------------~~~i~i~D~G~Gi~~~~~~~if~~f~~~~~~---~~~g~GlG 418 (449)
T PRK10337 380 --------------------------------------ARNFTVRDNGPGVTPEALARIGERFYRPPGQ---EATGSGLG 418 (449)
T ss_pred --------------------------------------eeEEEEEECCCCCCHHHHHHhcccccCCCCC---CCCccchH
Confidence 1148999999999999999999999986542 33699999
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCceeEEEEEE
Q 001330 631 LGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662 (1099)
Q Consensus 631 LaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~ 662 (1099)
|+||++++++|||+|++++.++ .|++|++.
T Consensus 419 L~iv~~i~~~~gg~l~~~s~~~--~G~~~~i~ 448 (449)
T PRK10337 419 LSIVRRIAKLHGMNVSFGNAPE--GGFEAKVS 448 (449)
T ss_pred HHHHHHHHHHcCCEEEEEecCC--CeEEEEEe
Confidence 9999999999999999987653 48888875
No 26
>PRK10490 sensor protein KdpD; Provisional
Probab=99.97 E-value=1.1e-29 Score=324.53 Aligned_cols=220 Identities=25% Similarity=0.443 Sum_probs=185.1
Q ss_pred HhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecH
Q 001330 392 MNKTFALAKASHDVRASLAAIIGLVELCHEDAN-PGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNL 470 (1099)
Q Consensus 392 ~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~-~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL 470 (1099)
+.+..+++.+||||||||++|.|+++++..... ...+..+.++.|.+.+.++.++++++++++++++|.+.+..+++++
T Consensus 662 ~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~~~L 741 (895)
T PRK10490 662 QLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWLTL 741 (895)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCH
Confidence 456779999999999999999999998864432 2233446788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC-eEEEEEEEeccccchhh
Q 001330 471 AQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG-HISVRAAVKKKSFKQDI 549 (1099)
Q Consensus 471 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~ 549 (1099)
.+++++++..+...+..+++.+.+.. . ...+.+|+.+|.||+.|||+||+||++.| .|.+.+.....
T Consensus 742 ~eli~~~l~~l~~~~~~~~i~l~~~~--~----~~~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~------ 809 (895)
T PRK10490 742 EEVVGSALQMLEPGLSGHPINLSLPE--P----LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGE------ 809 (895)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcCC--C----CeEEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEeCC------
Confidence 99999999999888777777766532 2 23689999999999999999999999876 46665532211
Q ss_pred hhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccc
Q 001330 550 IASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629 (1099)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGL 629 (1099)
.+.|+|.|+|+|||++.+++||+|||+.+..+ ..+|+||
T Consensus 810 ---------------------------------------~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~--~~~G~GL 848 (895)
T PRK10490 810 ---------------------------------------RLQLDVWDNGPGIPPGQEQLIFDKFARGNKES--AIPGVGL 848 (895)
T ss_pred ---------------------------------------EEEEEEEECCCCCCHHHHHHhcCCCccCCCCC--CCCCccH
Confidence 57899999999999999999999999976532 3369999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 630 GLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 630 GLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
||+|||++++.|||+|++++.+ +.|++|+|.+|+.
T Consensus 849 GL~Ivk~ive~hGG~I~v~s~~--~~Gt~f~i~LPl~ 883 (895)
T PRK10490 849 GLAICRAIVEVHGGTIWAENRP--EGGACFRVTLPLE 883 (895)
T ss_pred HHHHHHHHHHHcCCEEEEEECC--CCeEEEEEEeECC
Confidence 9999999999999999998765 3599999999985
No 27
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=5.9e-29 Score=288.05 Aligned_cols=214 Identities=19% Similarity=0.325 Sum_probs=174.1
Q ss_pred hHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecH-H
Q 001330 393 NKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNL-A 471 (1099)
Q Consensus 393 ~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL-~ 471 (1099)
.+..|++++||||||||++|.++++++..... . ....+....+++..++++++++++.+........+.+++ .
T Consensus 136 ~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~--~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~~~~~~l~~ 209 (356)
T PRK10755 136 QERLFTADVAHELRTPLAGIRLHLELLEKQHH--I----DVAPLIARLDQMMHTVEQLLQLARAGQSFSSGHYQTVKLLE 209 (356)
T ss_pred HHHHHHHHhhHhhcChHHHHHHHHHHHHhccc--h----hHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhhhHHH
Confidence 34568999999999999999999998864322 1 233455567889999999999999887666666678888 9
Q ss_pred HHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC-eEEEEEEEeccccchhhh
Q 001330 472 QLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG-HISVRAAVKKKSFKQDII 550 (1099)
Q Consensus 472 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~~ 550 (1099)
+++..++..+...+..+++.+.++..+ ....+.+|+..++||+.||++||+||+++| .|.+.+...+
T Consensus 210 ~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~~-------- 277 (356)
T PRK10755 210 DVILPSQDELSEMLEQRQQTLLLPESA----ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQED-------- 277 (356)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEeccCC----CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEcC--------
Confidence 999999988998888999998884222 234689999999999999999999999764 5766653221
Q ss_pred hccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCcccc
Q 001330 551 ASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLG 630 (1099)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLG 630 (1099)
..+.|+|.|+|+||++++++++|++||+.+. ..+|+|||
T Consensus 278 -------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GlG 316 (356)
T PRK10755 278 -------------------------------------GGAVLAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLG 316 (356)
T ss_pred -------------------------------------CEEEEEEEECCCCCCHHHHHHhCCCeEeCCC----CCCCcCHH
Confidence 1478999999999999999999999998753 23699999
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 631 LGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 631 LaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
|+||+++++.|||+|+++|..+ +.|++|++.+|..
T Consensus 317 L~i~~~i~~~~gg~i~i~s~~~-~~Gt~~~i~~p~~ 351 (356)
T PRK10755 317 LSIVSRITQLHHGQFFLQNRQE-RSGTRAWVWLPKA 351 (356)
T ss_pred HHHHHHHHHHCCCEEEEEECCC-CCeEEEEEEecCC
Confidence 9999999999999999987763 2599999988753
No 28
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.97 E-value=4.5e-29 Score=299.53 Aligned_cols=213 Identities=18% Similarity=0.282 Sum_probs=161.5
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHH
Q 001330 395 TFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLL 474 (1099)
Q Consensus 395 ~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll 474 (1099)
..+++.++|||||||++|.|+++++...... .........+......+..++..+.++. .........++|+.+++
T Consensus 277 ~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~dl~~~~ 352 (494)
T TIGR02938 277 RETLSAAIHRLQGPMNLISAAISVLQRRGDD-AGNPASAAMLQQALSAGREHMEALRQVI---PQSPQEIVVPVNLNQIL 352 (494)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHHHHHHHHHhh---ccCcccccccccHHHHH
Confidence 4567888899999999999999998653221 1112233333334444444444444433 22334556789999999
Q ss_pred HHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCe-----EEEEEEEeccccchhh
Q 001330 475 EEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGH-----ISVRAAVKKKSFKQDI 549 (1099)
Q Consensus 475 ~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~-----I~v~~~~~~~~~~~~~ 549 (1099)
++++..+...+..+++.+.+++.... ..+.+|+.+|+|||.||++||+||++.+. |.+.....
T Consensus 353 ~~~~~~~~~~~~~~~i~~~~~~~~~~----~~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~-------- 420 (494)
T TIGR02938 353 RDVITLSTPRLLAAGIVVDWQPAATL----PAILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTALN-------- 420 (494)
T ss_pred HHHHHHhHHHHHhCCCEEEEecCCCC----CeeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEec--------
Confidence 99999999999999999998865432 25889999999999999999999997652 33332211
Q ss_pred hhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccc
Q 001330 550 IASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629 (1099)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGL 629 (1099)
...+.|+|.|||+|||++.+++||+|||+++... .+|+||
T Consensus 421 -------------------------------------~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---~~G~Gl 460 (494)
T TIGR02938 421 -------------------------------------GDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS---RKHIGM 460 (494)
T ss_pred -------------------------------------CCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC---CCCCcc
Confidence 1157899999999999999999999999987542 469999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 630 GLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 630 GLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
||+|||+||++|||+|++++.. ++|++|+|.+|+
T Consensus 461 GL~i~~~iv~~~gG~i~~~s~~--~~G~~f~i~lp~ 494 (494)
T TIGR02938 461 GLSVAQEIVADHGGIIDLDDDY--SEGCRIIVEFRV 494 (494)
T ss_pred cHHHHHHHHHHcCCEEEEEECC--CCCEEEEEEecC
Confidence 9999999999999999998765 369999999985
No 29
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.96 E-value=1.7e-27 Score=283.02 Aligned_cols=228 Identities=25% Similarity=0.341 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 001330 370 EMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNS 449 (1099)
Q Consensus 370 e~~l~~~l~~~~~a~~~ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LInd 449 (1099)
|+..++..++++.+ +.++....+..|++++||||||||+.|.++++++..+ .....+.+....+++..++++
T Consensus 207 Ei~~L~~~~n~m~~--~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~------~~~~~~~i~~~~~~~~~~i~~ 278 (435)
T PRK09467 207 EVRSVTRAFNQMAA--GIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE------DGYLAESINKDIEECNAIIEQ 278 (435)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc------hHHHHHHHHHHHHHHHHHHHH
Confidence 33444444554433 2334445677899999999999999999999877432 123445678889999999999
Q ss_pred HHHHHHhhcCCCcceEEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhcc
Q 001330 450 VMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT 529 (1099)
Q Consensus 450 lLdlskie~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT 529 (1099)
++++++.+.+ ...+++++.+++++++..+. ..+..+.++.... ...+.+|+..|.|++.||++||+||+
T Consensus 279 ~l~~~r~~~~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~----~~~~~~~~~~l~~il~NLl~NA~k~~ 347 (435)
T PRK09467 279 FIDYLRTGQE---MPMEMADLNALLGEVIAAES----GYEREIETALQPG----PIEVPMNPIAIKRALANLVVNAARYG 347 (435)
T ss_pred HHHHhcccCC---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC----CceEEECHHHHHHHHHHHHHHHHHhC
Confidence 9999997653 34578899999999987654 2344444443222 23689999999999999999999998
Q ss_pred CCCeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhh
Q 001330 530 SEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSI 609 (1099)
Q Consensus 530 ~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~I 609 (1099)
.|.|.|.+...+ ..+.|+|.|+|+||++++++++
T Consensus 348 -~~~i~i~~~~~~---------------------------------------------~~~~i~V~D~G~Gi~~~~~~~~ 381 (435)
T PRK09467 348 -NGWIKVSSGTEG---------------------------------------------KRAWFQVEDDGPGIPPEQLKHL 381 (435)
T ss_pred -CCeEEEEEEecC---------------------------------------------CEEEEEEEecCCCcCHHHHHHh
Confidence 567777654321 1478999999999999999999
Q ss_pred ccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 610 FEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 610 Fe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
|+||||.+.++. .+|+||||+||+++++.|||+|.+.+.++ .|++|++.+|++
T Consensus 382 ~~~f~~~~~~~~--~~g~GlGL~iv~~i~~~~~g~l~i~~~~~--~G~~~~i~lp~~ 434 (435)
T PRK09467 382 FQPFTRGDSARG--SSGTGLGLAIVKRIVDQHNGKVELGNSEE--GGLSARAWLPLT 434 (435)
T ss_pred cCCcccCCCCCC--CCCeehhHHHHHHHHHHCCCEEEEEECCC--CcEEEEEEEeCC
Confidence 999999887643 36999999999999999999999987653 589999998874
No 30
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.96 E-value=1.4e-26 Score=277.41 Aligned_cols=218 Identities=32% Similarity=0.478 Sum_probs=186.8
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHH
Q 001330 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473 (1099)
Q Consensus 394 k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~l 473 (1099)
...+++.++||||||++.+.++++.+... .+.++..++++.+..+++++..++++++.+++++..........+++.++
T Consensus 256 ~~~~~~~~~h~l~~pl~~i~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (475)
T PRK11100 256 VEQYVQTLTHELKSPLAAIRGAAELLQED-PPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALAAL 334 (475)
T ss_pred HHHHHHHhhhhhcCcHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHHHH
Confidence 45678999999999999999999998763 33456788999999999999999999999999998888778899999999
Q ss_pred HHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC-CeEEEEEEEeccccchhhhhc
Q 001330 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE-GHISVRAAVKKKSFKQDIIAS 552 (1099)
Q Consensus 474 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~~ 552 (1099)
++++...+...+.++++.+.++.+ +..+.+|...|.+++.||+.||+||+.+ |.|.+++...++
T Consensus 335 ~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~~~--------- 399 (475)
T PRK11100 335 LEELVEAREAQAAAKGITLRLRPD------DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVDGE--------- 399 (475)
T ss_pred HHHHHHHHHHHHHhCCceEEEeCC------CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCC---------
Confidence 999999999999999999988754 2357889999999999999999999965 567776543221
Q ss_pred cccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHH
Q 001330 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632 (1099)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 632 (1099)
.+.++|.|+|+|||+++++++|++||+.+... ...+|+||||+
T Consensus 400 ------------------------------------~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~-~~~~~~GlGL~ 442 (475)
T PRK11100 400 ------------------------------------QVALSVEDQGPGIPDYALPRIFERFYSLPRPA-NGRKSTGLGLA 442 (475)
T ss_pred ------------------------------------EEEEEEEECCCCCCHHHHHHHHHHHccCCCCC-CCCCCcchhHH
Confidence 57899999999999999999999999875422 23469999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 633 Ivk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
||++++++|||+|.+.+.++ .|++|.+.+|..
T Consensus 443 i~~~~~~~~~G~i~i~s~~~--~Gt~v~i~lp~~ 474 (475)
T PRK11100 443 FVREVARLHGGEVTLRNRPE--GGVLATLTLPRH 474 (475)
T ss_pred HHHHHHHHCCCEEEEEEcCC--CeEEEEEEeeCC
Confidence 99999999999999987653 589999988863
No 31
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.96 E-value=4.2e-27 Score=267.55 Aligned_cols=217 Identities=26% Similarity=0.433 Sum_probs=186.0
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHH
Q 001330 395 TFALAKASHDVRASLAAIIGLVELCHED-ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473 (1099)
Q Consensus 395 ~~fla~~SHELRTPLt~I~g~~ell~~~-~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~l 473 (1099)
..|++.++||+||||++|.++++++... ....++..++++.|..+++++..++++++++++++.+......+++++.++
T Consensus 115 ~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 194 (333)
T TIGR02966 115 RDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMPAL 194 (333)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHHHH
Confidence 4588999999999999999999988654 344456778899999999999999999999999999888888899999999
Q ss_pred HHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC-CeEEEEEEEeccccchhhhhc
Q 001330 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE-GHISVRAAVKKKSFKQDIIAS 552 (1099)
Q Consensus 474 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~~ 552 (1099)
++.++..+...+..+++.+.++. +. ...+.+|+..|.+|+.||+.||+||++. +.|.|.+.....
T Consensus 195 i~~~~~~~~~~~~~~~i~i~~~~-~~----~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~--------- 260 (333)
T TIGR02966 195 LDHLRDEAEALSQGKNHQITFEI-DG----GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDGG--------- 260 (333)
T ss_pred HHHHHHHHHHHHHHcCcEEEEcC-CC----CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEcCC---------
Confidence 99999999999999999998876 22 3468999999999999999999999875 456665432211
Q ss_pred cccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHH
Q 001330 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632 (1099)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 632 (1099)
.+.|.|.|+|+|||++.++++|++|++.+.......+|+||||+
T Consensus 261 ------------------------------------~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~ 304 (333)
T TIGR02966 261 ------------------------------------GAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLA 304 (333)
T ss_pred ------------------------------------EEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHH
Confidence 47899999999999999999999999887655555579999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEEEEEEE
Q 001330 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663 (1099)
Q Consensus 633 Ivk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l 663 (1099)
||+++++.|||+|++.+.+ +.|++|++.+
T Consensus 305 ~~~~~~~~~gG~i~~~s~~--~~Gt~~~i~l 333 (333)
T TIGR02966 305 IVKHVLSRHHARLEIESEL--GKGSTFSFIF 333 (333)
T ss_pred HHHHHHHHCCCEEEEEecC--CCCeEEEEEC
Confidence 9999999999999998765 3699998863
No 32
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.95 E-value=4.2e-27 Score=250.57 Aligned_cols=219 Identities=24% Similarity=0.330 Sum_probs=172.4
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHH
Q 001330 395 TFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLL 474 (1099)
Q Consensus 395 ~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll 474 (1099)
+....+++||||+||.+|+|.+++|.... +++..++|.+.|-++++||..|++.+.-++- ....+..++|+++++
T Consensus 133 ~~L~r~LAHEIKNPL~GiRGAAQLLe~~l-pd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~VL 207 (363)
T COG3852 133 KGLVRGLAHEIKNPLGGIRGAAQLLERAL-PDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHEVL 207 (363)
T ss_pred HHHHHHHHHHhcCcccchhhHHHHHHhhC-CChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcccccchHHHHH
Confidence 34567889999999999999999997654 3344789999999999999999999876663 345556789999999
Q ss_pred HHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccC---C--CeEEEEEEEeccccchhh
Q 001330 475 EEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTS---E--GHISVRAAVKKKSFKQDI 549 (1099)
Q Consensus 475 ~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~---~--G~I~v~~~~~~~~~~~~~ 549 (1099)
+.|.......+ ..++.+.-|.++.. ..+++|+++|.|++.||+.||+..-. . |.|+++....-.
T Consensus 208 erV~~lv~~e~-~~~i~l~rdYDPSL----P~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q------ 276 (363)
T COG3852 208 ERVRALVEAEF-ADNVRLIRDYDPSL----PEVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQ------ 276 (363)
T ss_pred HHHHHHHhccc-CCceEEeecCCCCC----ccccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceE------
Confidence 99988776543 45677765554332 25899999999999999999999864 2 677776522110
Q ss_pred hhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccc
Q 001330 550 IASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGL 629 (1099)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGL 629 (1099)
..+...-....+.++|.|||+|||++-++++|.||..++ .+||||
T Consensus 277 -----------------------------~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r------~~GsGL 321 (363)
T COG3852 277 -----------------------------LTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGR------EGGTGL 321 (363)
T ss_pred -----------------------------EEccCceeEeeeeeEEecCCCCCChHHhhhccccccccC------CCCccc
Confidence 011112234467899999999999999999999999754 379999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 630 GLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 630 GLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
||+|+++||..|||.|+++|.+ | .|+|++.+|...
T Consensus 322 GLala~~li~qH~G~Ie~~S~P-g--~T~FrvllP~~~ 356 (363)
T COG3852 322 GLALAQNLIDQHGGKIEFDSWP-G--RTVFRVLLPIRK 356 (363)
T ss_pred cHHHHHHHHHhcCCEEEEeccC-C--ceEEEEEeeccc
Confidence 9999999999999999997664 3 799999998753
No 33
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.95 E-value=2.3e-26 Score=263.85 Aligned_cols=225 Identities=22% Similarity=0.339 Sum_probs=189.4
Q ss_pred HHHHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 001330 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHED--ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKME 462 (1099)
Q Consensus 385 ~~ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~--~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~ 462 (1099)
.+.+|.+..-..|...+||+||.||+.|.+|++++.+. ...+++..+++..+.+.+..+..||++++.+|++..-...
T Consensus 515 r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~~~ 594 (750)
T COG4251 515 RELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTEAP 594 (750)
T ss_pred HHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCC
Confidence 34566666667788899999999999999999999876 5667888999999999999999999999999998765544
Q ss_pred ceEEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC--eEEEEEEE
Q 001330 463 LVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG--HISVRAAV 540 (1099)
Q Consensus 463 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G--~I~v~~~~ 540 (1099)
+ ++.|+.+++.+++..........|+++.+.+- ..+.+|+.++.|++.||+.||+||...+ .|.|....
T Consensus 595 l--~~td~~~vv~~vl~~l~~ri~dtgaei~i~~l-------p~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r 665 (750)
T COG4251 595 L--QPTDVQKVVDKVLLELSQRIADTGAEIRIAPL-------PVVAADATQLGQVFQNLIANAIKFGGPENPDIEISAER 665 (750)
T ss_pred C--CCcchHHHHHHHHHhcccccccccceEEeccc-------ceeecCHHHHHHHHHHHHhhheecCCCCCCceEEeeec
Confidence 4 58899999999999999999999999988751 2589999999999999999999998665 34444221
Q ss_pred eccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccC
Q 001330 541 KKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA 620 (1099)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~ 620 (1099)
.+ ..+.|.|.|+|+||+++..++||..|.|....
T Consensus 666 ~e---------------------------------------------d~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~- 699 (750)
T COG4251 666 QE---------------------------------------------DEWTFSVRDNGIGIDPAYFERIFVIFQRLHSR- 699 (750)
T ss_pred cC---------------------------------------------CceEEEecCCCCCcCHHHHHHHHHHHHhcCch-
Confidence 11 14789999999999999999999999987432
Q ss_pred CCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 621 LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 621 ~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
.++.|+|+||+|||+|++.|+|+|+|++.. |.|+||.|++|...
T Consensus 700 -~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~--gEgsTF~f~lp~~~ 743 (750)
T COG4251 700 -DEYLGTGLGLAICKKIAERHQGRIWVESTP--GEGSTFYFTLPVGG 743 (750)
T ss_pred -hhhcCCCccHHHHHHHHHHhCceEEEeecC--CCceeEEEEeecCC
Confidence 346799999999999999999999998765 36999999998754
No 34
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.95 E-value=6.4e-26 Score=261.52 Aligned_cols=216 Identities=20% Similarity=0.332 Sum_probs=166.9
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHH
Q 001330 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473 (1099)
Q Consensus 394 k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~l 473 (1099)
...|++.++|||||||++|.|+++++.+.. .+++..++++.|...++++..++++++.+.+... ....++..+
T Consensus 130 ~~~~~~~iaHelr~pL~~i~~~~~~l~~~~-~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~------~~~~~l~~~ 202 (348)
T PRK11073 130 ARDLVRGLAHEIKNPLGGLRGAAQLLSKAL-PDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HVTESIHKV 202 (348)
T ss_pred HHHHHHhhhHhhcChHHHHHHHHHHhhhcC-CChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CccccHHHH
Confidence 456889999999999999999999987543 3456788999999999999999999998765432 346799999
Q ss_pred HHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhcc-C-CCeEEEEEEEeccccchhhhh
Q 001330 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT-S-EGHISVRAAVKKKSFKQDIIA 551 (1099)
Q Consensus 474 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT-~-~G~I~v~~~~~~~~~~~~~~~ 551 (1099)
++.+...+.... .+++.+.++.+... ..+.+|+.+|.||+.||++||+||+ + .|.|.+.+......
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~----~~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~------- 270 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSL----PELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQL------- 270 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCC----CceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEcccccc-------
Confidence 999888776544 46777777653322 2578999999999999999999997 3 35566544211000
Q ss_pred ccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccH
Q 001330 552 SNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631 (1099)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGL 631 (1099)
..........+.++|.|+|+|||++.++++|+|||+.+ .+|+||||
T Consensus 271 ----------------------------~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~------~~g~GlGL 316 (348)
T PRK11073 271 ----------------------------TLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGR------EGGTGLGL 316 (348)
T ss_pred ----------------------------ccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCC------CCCccCCH
Confidence 00000111246799999999999999999999999753 35999999
Q ss_pred HHHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 632 GIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 632 aIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
+|||++|+.|||+|++++. ++ |++|++.+|+
T Consensus 317 ~i~~~iv~~~gG~i~~~s~-~~--~~~f~i~lP~ 347 (348)
T PRK11073 317 SIARNLIDQHSGKIEFTSW-PG--HTEFSVYLPI 347 (348)
T ss_pred HHHHHHHHHcCCeEEEEec-CC--ceEEEEEEec
Confidence 9999999999999999865 33 4889998886
No 35
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.93 E-value=3.1e-24 Score=241.57 Aligned_cols=216 Identities=36% Similarity=0.574 Sum_probs=180.1
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CcceEEEecHHH
Q 001330 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGK-MELVEEEFNLAQ 472 (1099)
Q Consensus 394 k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~-~~l~~~~~dL~~ 472 (1099)
+..+++.++||+|||++++.++++.+... ......+.+..+....+++..++++++++++.+.+. .....+.+++..
T Consensus 115 ~~~~~~~~~hel~~pl~~i~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 115 KREFLANISHELRTPLTAIRGLLELLLEG--LLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHhhhhhhcCcHHHHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 67789999999999999999999865443 111157788889999999999999999999999873 444467788999
Q ss_pred HHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhc
Q 001330 473 LLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552 (1099)
Q Consensus 473 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~ 552 (1099)
++++++..+...+..+++.+....+ ....+.+|+.++.|++.||++||+||++.|.|.|.+.....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~--------- 258 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP-----ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDDE--------- 258 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC-----CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecCC---------
Confidence 9999999999888888888886543 13468899999999999999999999986677776542210
Q ss_pred cccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHH
Q 001330 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632 (1099)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 632 (1099)
.+.++|.|+|+||+++.++++|++|++.+..+. |+||||+
T Consensus 259 ------------------------------------~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~----g~GlGL~ 298 (336)
T COG0642 259 ------------------------------------QVTISVEDTGPGIPEEELERIFEPFFRTDKSRS----GTGLGLA 298 (336)
T ss_pred ------------------------------------eEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC----CCCccHH
Confidence 578999999999999999999999999876532 9999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 633 Ivk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
|||++++.|||+|.+.+.+ +.|++|++.+|...
T Consensus 299 i~~~~~~~~~g~i~~~~~~--~~Gt~~~i~lP~~~ 331 (336)
T COG0642 299 IVKRIVELHGGTISVESEP--GKGTTFTIRLPLAP 331 (336)
T ss_pred HHHHHHHHcCCEEEEEecC--CCceEEEEEEeccc
Confidence 9999999999999997765 35799999998754
No 36
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.93 E-value=1.8e-24 Score=266.03 Aligned_cols=212 Identities=24% Similarity=0.397 Sum_probs=177.9
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHH
Q 001330 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473 (1099)
Q Consensus 394 k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~l 473 (1099)
...++++++|||||||++|.|+++++... ..+.+..++++.|.++++++..++++++++++.+.. ..+++++.++
T Consensus 390 l~~~~~~~~hel~~~l~~i~~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~ 464 (607)
T PRK11360 390 LGELVAGVAHEIRNPLTAIRGYVQIWRQQ-TSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRES----QWQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcC----ccceecHHHH
Confidence 44678999999999999999999998655 344567889999999999999999999999987643 3478999999
Q ss_pred HHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC-CeEEEEEEEeccccchhhhhc
Q 001330 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE-GHISVRAAVKKKSFKQDIIAS 552 (1099)
Q Consensus 474 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~~ 552 (1099)
++++...+......+++.+.++.++.. ..+.+|+..|.|++.||+.||+||+.. |.|.|++....+
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~--------- 531 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNEL----PPIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSD--------- 531 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCC----CeEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCC---------
Confidence 999999999887888998887754322 257889999999999999999999764 567666532211
Q ss_pred cccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHH
Q 001330 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632 (1099)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 632 (1099)
..+.|+|.|+|+|||++.++++|+||++.+. .|+||||+
T Consensus 532 -----------------------------------~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~------~g~glGL~ 570 (607)
T PRK11360 532 -----------------------------------GQVAVSIEDNGCGIDPELLKKIFDPFFTTKA------KGTGLGLA 570 (607)
T ss_pred -----------------------------------CEEEEEEEeCCCCCCHHHHhhhcCCceeCCC------CCCchhHH
Confidence 0278999999999999999999999997542 58999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 633 Ivk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
+||++|++|||+|++++.+ |+||+|++.+|+.
T Consensus 571 ~~~~~~~~~~G~i~~~s~~--~~Gt~~~i~lp~~ 602 (607)
T PRK11360 571 LSQRIINAHGGDIEVESEP--GVGTTFTLYLPIN 602 (607)
T ss_pred HHHHHHHHcCCEEEEEEcC--CCceEEEEEecCC
Confidence 9999999999999998765 3699999999874
No 37
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.92 E-value=5.5e-24 Score=267.01 Aligned_cols=202 Identities=20% Similarity=0.306 Sum_probs=162.2
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHH
Q 001330 395 TFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLL 474 (1099)
Q Consensus 395 ~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll 474 (1099)
.++.+.++||||||++.+..+.+.+......++..++.++.+.++.+++.++++++.+.. ...+.+++++.+++
T Consensus 476 ~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~------~~~~~~~~~l~~ll 549 (679)
T TIGR02916 476 NRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSKG------LEEEKLCVDLVDLL 549 (679)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cccCCccccHHHHH
Confidence 346788999999999999998887765544455567788999999999999988775432 35566789999999
Q ss_pred HHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC-CeEEEEEEEeccccchhhhhcc
Q 001330 475 EEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE-GHISVRAAVKKKSFKQDIIASN 553 (1099)
Q Consensus 475 ~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~~~ 553 (1099)
+++.+.+... ...+++.++. ...+.+|+.++.||+.||++||+||+++ |.|.|++...+
T Consensus 550 ~~~~~~~~~~--~~~~~l~~~~-------~~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~~----------- 609 (679)
T TIGR02916 550 RRAIASKRAQ--GPRPEVSIDT-------DLSVRADRERLERVLGHLVQNALEATPGEGRVAIRVEREC----------- 609 (679)
T ss_pred HHHHHHhhhh--cCCceEEeCC-------CceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEcC-----------
Confidence 9999876543 3445555431 1368999999999999999999999965 56777664321
Q ss_pred ccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCccc-HhhhccccccccccCCCCCCCccccHH
Q 001330 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDK-QNSIFEEFVQVKETALGHQEGLGLGLG 632 (1099)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~-l~~IFe~F~q~d~s~~~~~~GtGLGLa 632 (1099)
..+.|+|.|+|+|||++. .+++|+||++.+. +|+||||+
T Consensus 610 ----------------------------------~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~------~G~GLGL~ 649 (679)
T TIGR02916 610 ----------------------------------GAARIEIEDSGCGMSPAFIRERLFKPFDTTKG------AGMGIGVY 649 (679)
T ss_pred ----------------------------------CEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC------CCcchhHH
Confidence 157899999999999999 9999999997643 59999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEEEEEEEe
Q 001330 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664 (1099)
Q Consensus 633 Ivk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~ 664 (1099)
|||++++.|||+|++++.+ |+|++|++.+|
T Consensus 650 i~~~iv~~~gG~i~v~s~~--g~Gt~f~i~LP 679 (679)
T TIGR02916 650 ECRQYVEEIGGRIEVESTP--GQGTIFTLVLP 679 (679)
T ss_pred HHHHHHHHcCCEEEEEecC--CCceEEEEEeC
Confidence 9999999999999998765 36999999876
No 38
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.91 E-value=1.1e-21 Score=239.62 Aligned_cols=193 Identities=22% Similarity=0.295 Sum_probs=132.4
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHH
Q 001330 395 TFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLI-RTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473 (1099)
Q Consensus 395 ~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I-~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~l 473 (1099)
..+++.+|||+||||++|.|++++... ++..+++..+ .....++..+++++.+ .+
T Consensus 340 ~~~l~~~sHel~npL~~I~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~ 395 (542)
T PRK11086 340 ADALRAQSHEFMNKLHVILGLLHLKSY-----DQLEDYILKTANNYQEEIGSLLGKIKS-------------------PV 395 (542)
T ss_pred HHHHHhhchhhcCHHHHHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHHhccC-------------------HH
Confidence 345778899999999999999986421 2233443322 2222333333332210 11
Q ss_pred HHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccC---CCeEEEEEEEeccccchhhh
Q 001330 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTS---EGHISVRAAVKKKSFKQDII 550 (1099)
Q Consensus 474 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~---~G~I~v~~~~~~~~~~~~~~ 550 (1099)
+...+......+.++++.+.++.....+ ......+...|.||+.||++||+||+. .|.|.+++...+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~-------- 465 (542)
T PRK11086 396 IAGFLLGKISRARELGITLIISEDSQLP--DSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYRN-------- 465 (542)
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCCCCC--cccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcC--------
Confidence 2222222334567788888876533211 111233456899999999999999963 356666553221
Q ss_pred hccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCcccc
Q 001330 551 ASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLG 630 (1099)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLG 630 (1099)
..+.|+|.|+|+|||++.+++||+||++.+ .+|+|||
T Consensus 466 -------------------------------------~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~------~~g~GlG 502 (542)
T PRK11086 466 -------------------------------------GWLHCEVSDDGPGIAPDEIDAIFDKGYSTK------GSNRGVG 502 (542)
T ss_pred -------------------------------------CEEEEEEEECCCCCCHHHHHHHHhCCCccC------CCCCcCc
Confidence 157899999999999999999999999643 3599999
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 631 LGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 631 LaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
|+|||++|+.|||+|++++.+ +.|++|+|.+|+.
T Consensus 503 L~iv~~iv~~~~G~i~v~s~~--~~G~~f~i~lP~~ 536 (542)
T PRK11086 503 LYLVKQSVENLGGSIAVESEP--GVGTQFFVQIPWD 536 (542)
T ss_pred HHHHHHHHHHcCCEEEEEeCC--CCcEEEEEEEeCC
Confidence 999999999999999998765 3699999999875
No 39
>PRK13560 hypothetical protein; Provisional
Probab=99.90 E-value=1.1e-22 Score=259.89 Aligned_cols=210 Identities=18% Similarity=0.209 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001330 380 QMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAG 459 (1099)
Q Consensus 380 ~~~a~~~ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g 459 (1099)
++++.++++++...|..|+++|||||||||++|.|+++++.+... +++...++..+......+..+.+.++..
T Consensus 591 rK~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~------ 663 (807)
T PRK13560 591 RKHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLH-DEEAKCAFAESQDRICAMALAHEKLYQS------ 663 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcC-CHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 334445556666778999999999999999999999998865443 3444555555554444444444443321
Q ss_pred CCcceEEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC----CeEE
Q 001330 460 KMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE----GHIS 535 (1099)
Q Consensus 460 ~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~----G~I~ 535 (1099)
....++++.+++++++..+...+..++..+.+.+.... ......+...+.|||.||++||+||+.. |.|.
T Consensus 664 ---~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~ 737 (807)
T PRK13560 664 ---EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADD---GCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIK 737 (807)
T ss_pred ---ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCc---cccccccccchHHHHHHHHHHHHHhhccCCCCceEE
Confidence 23467899999999999888776655544433322211 1123345667899999999999999843 4566
Q ss_pred EEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhcccccc
Q 001330 536 VRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615 (1099)
Q Consensus 536 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q 615 (1099)
+.+.... ...+.|+|.|||+|||++..
T Consensus 738 i~~~~~~--------------------------------------------~~~v~i~V~D~G~GI~~~~~--------- 764 (807)
T PRK13560 738 VEIREQG--------------------------------------------DGMVNLCVADDGIGLPAGFD--------- 764 (807)
T ss_pred EEEEEcC--------------------------------------------CCEEEEEEEeCCCcCCcccc---------
Confidence 6543210 11578999999999998731
Q ss_pred ccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 616 VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 616 ~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
...|+||||+|||+||+.|||+|+|+|. +||+|+|.+|+.
T Consensus 765 -------~~~~~gLGLai~~~iv~~~gG~I~v~S~----~Gt~F~i~lP~~ 804 (807)
T PRK13560 765 -------FRAAETLGLQLVCALVKQLDGEIALDSR----GGARFNIRFPMS 804 (807)
T ss_pred -------ccccCCccHHHHHHHHHHcCCEEEEEcC----CceEEEEEecCC
Confidence 1247789999999999999999999762 599999999974
No 40
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.89 E-value=6.6e-21 Score=229.87 Aligned_cols=194 Identities=12% Similarity=0.170 Sum_probs=150.4
Q ss_pred hHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHH
Q 001330 393 NKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQ 472 (1099)
Q Consensus 393 ~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ 472 (1099)
.+.+..+.++||+||||++|.++++++++....+++.++..+.|++.+.++.++++++++..+- ...+++++.+
T Consensus 301 ~r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~------~~l~~~~L~~ 374 (495)
T PRK11644 301 VRRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRP------RQLDDLTLEQ 374 (495)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCC------cccccCCHHH
Confidence 3455667788999999999999999886544444556678889999999999999999865542 2345789999
Q ss_pred HHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhc
Q 001330 473 LLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552 (1099)
Q Consensus 473 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~ 552 (1099)
.+++++..+.......++++..+.++. ....+|+..+.|++.|+++||+||++.|.|.+++...++
T Consensus 375 ~l~~l~~~l~~~~~~~~v~l~~~~~~~-----~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~~~--------- 440 (495)
T PRK11644 375 AIRSLMREMELEDRGIVSHLDWRIDES-----ALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQDE--------- 440 (495)
T ss_pred HHHHHHHHHHHhhcCceEEEEecCCcc-----cCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEcCC---------
Confidence 999999888755444444444443221 134568889999999999999999998887776543211
Q ss_pred cccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHH
Q 001330 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632 (1099)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 632 (1099)
.+.++|+|+|+|||+++ .|.|+||+
T Consensus 441 ------------------------------------~i~l~V~DnG~Gi~~~~-------------------~~~GLGL~ 465 (495)
T PRK11644 441 ------------------------------------RLMLVIEDDGSGLPPGS-------------------GQQGFGLR 465 (495)
T ss_pred ------------------------------------EEEEEEEECCCCCCcCC-------------------CCCCCcHH
Confidence 57899999999999752 36799999
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 633 Ivk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
|||++++.|||+|++++ +.|++|++.+|.
T Consensus 466 ivr~iv~~~GG~i~v~S----~~Gt~f~I~LP~ 494 (495)
T PRK11644 466 GMRERVTALGGTLTISC----THGTRLSVSLPQ 494 (495)
T ss_pred HHHHHHHHcCCEEEEEc----CCCEEEEEEEeC
Confidence 99999999999999976 358999999874
No 41
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-21 Score=225.31 Aligned_cols=207 Identities=20% Similarity=0.285 Sum_probs=162.5
Q ss_pred HHhHHHhHHHHHHHHHHHHHHhcCC-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHH
Q 001330 399 AKASHDVRASLAAIIGLVELCHEDA-----NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473 (1099)
Q Consensus 399 a~~SHELRTPLt~I~g~~ell~~~~-----~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~l 473 (1099)
..++||||+|||-|+-.+|-+.... ...+...++.++|.++...+.+||++.-.|+|+-. +..+..||.++
T Consensus 491 rRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~----p~~e~~dL~~l 566 (712)
T COG5000 491 RRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPA----PKLEKSDLRAL 566 (712)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCCcchHHHH
Confidence 3467999999999999999775321 12344678899999999999999999999999754 44578899999
Q ss_pred HHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC-----Ce-EEEEEEEeccccch
Q 001330 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE-----GH-ISVRAAVKKKSFKQ 547 (1099)
Q Consensus 474 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-----G~-I~v~~~~~~~~~~~ 547 (1099)
+.+++..+... ...+.+..+.... +....+|+..|.|++.||+.||..+-.. +. -.+++..
T Consensus 567 l~e~~~L~e~~--~~~i~f~~e~g~e----pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~------- 633 (712)
T COG5000 567 LKEVSFLYEIG--NDHIVFAAEFGGE----PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSL------- 633 (712)
T ss_pred HHHHHHHHhcc--CCCeEEEeecCCC----ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEE-------
Confidence 99999887653 3556676665432 3467889999999999999999988532 10 0111111
Q ss_pred hhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCc
Q 001330 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGL 627 (1099)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~Gt 627 (1099)
+.....+++.|.|||.|.|.|.+.++||||.+.++ .||
T Consensus 634 ------------------------------------~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~------KGT 671 (712)
T COG5000 634 ------------------------------------DDADGRIVVDVIDNGKGFPRENRHRALEPYVTTRE------KGT 671 (712)
T ss_pred ------------------------------------ecCCCeEEEEEecCCCCCChHHhhhhccCceeccc------ccc
Confidence 11123689999999999999999999999998654 599
Q ss_pred cccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 628 GLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 628 GLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
||||+|||+|+|-|||.|.+.+.+ +-.|.+.++.+|.
T Consensus 672 GLGLAiVKkIvEeHGG~leL~da~-d~~GA~i~i~fp~ 708 (712)
T COG5000 672 GLGLAIVKKIVEEHGGRLELHNAP-DFDGAMIRIKFPL 708 (712)
T ss_pred cccHHHHHHHHHhcCCeEEecCCC-CCCCcEEEEEccc
Confidence 999999999999999999998874 3349999988876
No 42
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.87 E-value=7.1e-21 Score=233.20 Aligned_cols=195 Identities=20% Similarity=0.281 Sum_probs=144.4
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHHHH
Q 001330 397 ALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEE 476 (1099)
Q Consensus 397 fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll~~ 476 (1099)
.+..++||+++||++|.|++++- +..+.++.|...+.++..+++++...-+ ...+...
T Consensus 341 ~l~~~~he~~n~L~~i~g~l~~~--------~~~~~~~~i~~~s~~~~~l~~~l~~~~~--------------~~~~~~~ 398 (545)
T PRK15053 341 SLRTLRHEHLNWMSTLNGLLQMK--------EYDRVLEMVQGESQAQQQLIDSLREAFA--------------DRQVAGL 398 (545)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhc--------hhhHHHHHHHHHHHHHHHHHHHHHHhcc--------------cHHHHHH
Confidence 35667899999999999987753 1245677888888888888888876432 1222222
Q ss_pred HHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhcc---CCC--eEEEEEEEeccccchhhhh
Q 001330 477 VVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT---SEG--HISVRAAVKKKSFKQDIIA 551 (1099)
Q Consensus 477 v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT---~~G--~I~v~~~~~~~~~~~~~~~ 551 (1099)
+. .....+.++++.+.+...... ......+|+..|.||+.||++||+||+ ++| .|.+.+....
T Consensus 399 l~-~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~--------- 466 (545)
T PRK15053 399 LF-GKVQRARELGLKMVIVPGSQL--SQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEG--------- 466 (545)
T ss_pred HH-HHHHHHHHhCCceEEcCCCcc--ccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECC---------
Confidence 22 223456778888887643221 122356799999999999999999994 333 4555432211
Q ss_pred ccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccH
Q 001330 552 SNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631 (1099)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGL 631 (1099)
..+.|+|.|+|+|||++.+++||++||+.+. +..+|+||||
T Consensus 467 ------------------------------------~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~---~~~~g~GlGL 507 (545)
T PRK15053 467 ------------------------------------DDVVIEVADQGCGVPESLRDKIFEQGVSTRA---DEPGEHGIGL 507 (545)
T ss_pred ------------------------------------CEEEEEEEeCCCCcCHHHHHHHhCCCCCCCC---CCCCCceeCH
Confidence 1578999999999999999999999998543 2345899999
Q ss_pred HHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 632 GIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 632 aIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
+|||++|+.|||+|+++|.. |.||+|++.+|..
T Consensus 508 ~ivk~iv~~~~G~i~v~s~~--~~Gt~f~i~lP~~ 540 (545)
T PRK15053 508 YLIASYVTRCGGVITLEDND--PCGTLFSIFIPKV 540 (545)
T ss_pred HHHHHHHHHcCCEEEEEECC--CCeEEEEEEECCC
Confidence 99999999999999998765 4699999999874
No 43
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.85 E-value=2.3e-19 Score=198.89 Aligned_cols=207 Identities=21% Similarity=0.367 Sum_probs=167.4
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHhc--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHHH
Q 001330 398 LAKASHDVRASLAAIIGLVELCHE--DANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLE 475 (1099)
Q Consensus 398 la~~SHELRTPLt~I~g~~ell~~--~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll~ 475 (1099)
+.++||||..||+++..|+=-... +..+.....++++.|..-.+|+..+|+.+..|+|-.+++-.+ .+++|.++++
T Consensus 455 mTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l--qpV~L~~~v~ 532 (673)
T COG4192 455 MTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLNSVVE 532 (673)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccHHHHHH
Confidence 678899999999999988654332 122345578899999999999999999999999987776544 6899999999
Q ss_pred HHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC--CeEEEEEEEeccccchhhhhcc
Q 001330 476 EVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE--GHISVRAAVKKKSFKQDIIASN 553 (1099)
Q Consensus 476 ~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~--G~I~v~~~~~~~~~~~~~~~~~ 553 (1099)
.+.+.+....+.+.+.+....+ ...|.||..+++||+.||+-||+..+.. ..|.+.+...
T Consensus 533 ~AweLl~~khk~rQ~~Li~ptD------~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~------------ 594 (673)
T COG4192 533 QAWELLQTKHKRRQIKLINPTD------DLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGT------------ 594 (673)
T ss_pred HHHHHHHhhhhhccccccCCcc------cceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeecC------------
Confidence 9999999998888888765432 2479999999999999999999998744 3444433211
Q ss_pred ccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHH
Q 001330 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633 (1099)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaI 633 (1099)
+...+++.|.|+|+|-|-+-.+++|.||...+. -|.||||+|
T Consensus 595 --------------------------------~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~------vgLGlGLSI 636 (673)
T COG4192 595 --------------------------------EQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKE------VGLGLGLSI 636 (673)
T ss_pred --------------------------------cccceEEEEecCCCCCchhHHHHhcCCcccccc------cccccchhH
Confidence 112578999999999999999999999987643 499999999
Q ss_pred HHHHHHhcCCEEEEEecCCCceeEEEEEEEe
Q 001330 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664 (1099)
Q Consensus 634 vk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~ 664 (1099)
|.+|++.|.|++.+.|.-. ++.++.+.+.
T Consensus 637 sqSlmeqmqG~l~lAStLt--~nA~ViL~f~ 665 (673)
T COG4192 637 SQSLMEQMQGRLALASTLT--KNAMVILEFQ 665 (673)
T ss_pred HHHHHHHhcCcchHhhhcc--cCcEEEEEEe
Confidence 9999999999999987763 5777666553
No 44
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.82 E-value=1.2e-19 Score=196.27 Aligned_cols=119 Identities=28% Similarity=0.395 Sum_probs=110.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+|||||||+.....+...|++.||.|.++.+|.+|++.+. .. ||+|++|++||+|||+++|++||+.
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-----------~~-~dlviLD~~lP~~dG~~~~~~iR~~ 68 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAR-----------EQ-PDLVLLDLMLPDLDGLELCRRLRAK 68 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------cC-CCEEEEECCCCCCCHHHHHHHHHhh
Confidence 37999999999999999999999999999999999999984 34 9999999999999999999999964
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
. ...+|||++||..+.++...++++|||||++|||++.||.++|+.++++.
T Consensus 69 -~--~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 69 -K--GSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred -c--CCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 2 34689999999999999999999999999999999999999999998764
No 45
>PRK13559 hypothetical protein; Provisional
Probab=99.78 E-value=7.2e-18 Score=195.72 Aligned_cols=185 Identities=17% Similarity=0.225 Sum_probs=138.7
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHH
Q 001330 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473 (1099)
Q Consensus 394 k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~l 473 (1099)
+..+++.++||+||||+.|.|+++++... .+..++++.|...+.+|.++++++++.++ .+++++.++
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~~----~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~ 236 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGRA----DDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEEL 236 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhccC----CCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHH
Confidence 34578889999999999999999988521 22456788899999999999999987653 367899999
Q ss_pred HHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEcc-HHHHHHHHHHHHHhHhhc---cC-CCeEEEEEEEeccccchh
Q 001330 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGD-RVKLKQILCNLVSNSMKF---TS-EGHISVRAAVKKKSFKQD 548 (1099)
Q Consensus 474 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD-~~rL~QIL~NLL~NAiKf---T~-~G~I~v~~~~~~~~~~~~ 548 (1099)
+++++..+... +..+.++.++ ..+..+ ...|.|||.||+.||+|| ++ .|.|.|.+.....
T Consensus 237 ~~~~~~~~~~~----~~~i~~~~~~------~~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~----- 301 (361)
T PRK13559 237 IRAQVAPYAPR----ATRVAFEGPG------IRLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSPE----- 301 (361)
T ss_pred HHHHHHhhcCC----CceEEEECCC------eeeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCC-----
Confidence 99998877543 4445444211 122223 356999999999999999 43 4677776521110
Q ss_pred hhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCcc
Q 001330 549 IIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLG 628 (1099)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtG 628 (1099)
...+.+.|.|+|.|++++ ..|+|
T Consensus 302 --------------------------------------~~~~~i~v~d~G~~~~~~-------------------~~~~g 324 (361)
T PRK13559 302 --------------------------------------GAGFRIDWQEQGGPTPPK-------------------LAKRG 324 (361)
T ss_pred --------------------------------------CCeEEEEEECCCCCCCCC-------------------CCCCC
Confidence 115789999999997764 13789
Q ss_pred ccHHHHHHHHHh-cCCEEEEEecCCCceeEEEEEEEecc
Q 001330 629 LGLGIVQSMVHL-MKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 629 LGLaIvk~lVe~-~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
+||.||+++|+. |||+|++.+. + .|++|+|.+|+.
T Consensus 325 ~Gl~i~~~~v~~~~gG~i~~~~~-~--~G~~~~l~~P~~ 360 (361)
T PRK13559 325 FGTVIIGAMVESQLNGQLEKTWS-D--DGLLARIEIPSR 360 (361)
T ss_pred cHHHHHHHHHHHHcCCeEEEEEc-C--CeEEEEEEEeCC
Confidence 999999999997 9999999765 3 499999999863
No 46
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.77 E-value=1.8e-18 Score=166.15 Aligned_cols=109 Identities=32% Similarity=0.587 Sum_probs=94.8
Q ss_pred ccHHHHHHHHHHHHHhHhhccCC-CeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCc
Q 001330 509 GDRVKLKQILCNLVSNSMKFTSE-GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNL 587 (1099)
Q Consensus 509 gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (1099)
||+.+++||+.||++||+||+++ |.|.|.+.....
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~-------------------------------------------- 36 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDDD-------------------------------------------- 36 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETT--------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecC--------------------------------------------
Confidence 79999999999999999999977 778887654322
Q ss_pred eeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 588 LQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 588 ~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
.+.|+|.|+|.|||+++++++|++|++.+.+. ...+|+||||++|+.++++|+|++++.+.+. .||+|+|.+|+
T Consensus 37 -~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~~-~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~--~gt~v~~~~p~ 110 (111)
T PF02518_consen 37 -HLSIEISDNGVGIPPEELEKLFEPFFTSDKSE-TSISGHGLGLYIVKQIAERHGGELTIESSEG--GGTTVTFTLPL 110 (111)
T ss_dssp -EEEEEEEESSSSTTHHHHHHHCSTTSHSSSSS-GGSSSSSHHHHHHHHHHHHTTEEEEEEEETT--TEEEEEEEEEG
T ss_pred -eEEEEEEeccccccccccccchhhcccccccc-cccCCCChHHHHHHHHHHHCCCEEEEEEcCC--CcEEEEEEEEC
Confidence 68899999999999999999999999988633 2346899999999999999999999988764 58999999886
No 47
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.75 E-value=2.2e-15 Score=174.31 Aligned_cols=194 Identities=26% Similarity=0.384 Sum_probs=140.8
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHHHH
Q 001330 397 ALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEE 476 (1099)
Q Consensus 397 fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll~~ 476 (1099)
.|...+||.++=|++|.|++++-. ..+..+.|.+.++.-..+++.+..--+ ..++..
T Consensus 336 aLRaq~HEfmNkLhtI~GLlql~~--------yd~a~~~I~~~~~~qq~~~~~l~~~i~---------------~~~lAg 392 (537)
T COG3290 336 ALRAQSHEFMNKLHTILGLLQLGE--------YDDALDYIQQESEEQQELIDSLSEKIK---------------DPVLAG 392 (537)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHhhhhhhHHHHHHhcc---------------cHHHHH
Confidence 466679999999999999998742 233344455554444444444432211 234455
Q ss_pred HHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccC---C-CeEEEEEEEeccccchhhhhc
Q 001330 477 VVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTS---E-GHISVRAAVKKKSFKQDIIAS 552 (1099)
Q Consensus 477 v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~---~-G~I~v~~~~~~~~~~~~~~~~ 552 (1099)
++-.-...|.++|+++.+++.... ....-.-+..-+--|+.|||+||+..+. + ..|.+.+....
T Consensus 393 ~LlgK~~rArElgv~l~Id~~S~l--~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~---------- 460 (537)
T COG3290 393 FLLGKISRARELGVSLIIDPNSQL--PQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRG---------- 460 (537)
T ss_pred HHHhHHHHHHHcCceEEEcCCCcC--CCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecC----------
Confidence 555556688999999999864432 2223455889999999999999999875 2 24554443211
Q ss_pred cccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHH
Q 001330 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632 (1099)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 632 (1099)
..+.|+|.|+||||||+..++||++=|.++. ++|.|.||+
T Consensus 461 -----------------------------------~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~-----~~~rGiGL~ 500 (537)
T COG3290 461 -----------------------------------DELVIEVADTGPGIPPEVRDKIFEKGVSTKN-----TGGRGIGLY 500 (537)
T ss_pred -----------------------------------CEEEEEEeCCCCCCChHHHHHHHhcCccccC-----CCCCchhHH
Confidence 2688999999999999999999998776543 468999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 633 Ivk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
+||++|+.+||.|+++|.. +.||+|.+.+|...
T Consensus 501 Lvkq~V~~~~G~I~~~s~~--~~Gt~F~i~iP~~~ 533 (537)
T COG3290 501 LVKQLVERLGGSIEVESEK--GQGTRFSIYIPKVK 533 (537)
T ss_pred HHHHHHHHcCceEEEeeCC--CCceEEEEECCCCc
Confidence 9999999999999998764 36999999998743
No 48
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.72 E-value=3.5e-16 Score=192.57 Aligned_cols=193 Identities=19% Similarity=0.246 Sum_probs=138.2
Q ss_pred HHHhHHHhHHHHHHHHHHHHH----HhcCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHH
Q 001330 398 LAKASHDVRASLAAIIGLVEL----CHEDA-NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQ 472 (1099)
Q Consensus 398 la~~SHELRTPLt~I~g~~el----l~~~~-~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ 472 (1099)
.+.++||+++|++.+..++.. +.... ...++..+.+..+.....++...+.+++...+ ....++++.+
T Consensus 364 ~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l~~ 436 (565)
T PRK10935 364 RATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANLGS 436 (565)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCHHH
Confidence 345789999998887766543 33221 22344566777777777777777777776443 3345789999
Q ss_pred HHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhc
Q 001330 473 LLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552 (1099)
Q Consensus 473 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~ 552 (1099)
.+++++..+... .++.+.++...+. .....+++.++.|++.||+.||+||++.|.|.+.......
T Consensus 437 ~l~~~~~~~~~~---~~~~i~~~~~~~~---~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~~~--------- 501 (565)
T PRK10935 437 ALEEMLDQLRNQ---TDAKITLDCRLPS---QALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTNPD--------- 501 (565)
T ss_pred HHHHHHHHHHHh---hCCeEEEEeeCCC---CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCC---------
Confidence 999999988754 3344444321111 1123445667999999999999999998888776643211
Q ss_pred cccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHH
Q 001330 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632 (1099)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 632 (1099)
..+.|+|.|+|+|||+++ ..|+||||+
T Consensus 502 -----------------------------------~~~~i~V~D~G~Gi~~~~------------------~~~~glGL~ 528 (565)
T PRK10935 502 -----------------------------------GEHTVSIRDDGIGIGELK------------------EPEGHYGLN 528 (565)
T ss_pred -----------------------------------CEEEEEEEECCcCcCCCC------------------CCCCCcCHH
Confidence 157899999999999732 137899999
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 633 Ivk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
||+++++.|||+|++.|.. +.|++|++.+|.+.
T Consensus 529 i~~~iv~~~~G~i~v~s~~--~~Gt~~~i~lP~~~ 561 (565)
T PRK10935 529 IMQERAERLGGTLTISQPP--GGGTTVSLTFPSQQ 561 (565)
T ss_pred HHHHHHHHcCCEEEEEECC--CCcEEEEEEECCCC
Confidence 9999999999999998765 35899999998753
No 49
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.70 E-value=8.8e-17 Score=186.00 Aligned_cols=121 Identities=26% Similarity=0.408 Sum_probs=110.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHh--hcCCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 963 KKFLVVEDDAIVLKVTSAVLG--KLGAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~--~~G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
.+||||||.+..|+.|+.++. +.|+++ -+|.||+||++.+.+ .+||+||+|+.||+|||+++++.+
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e-----------~~pDiviTDI~MP~mdGLdLI~~i 70 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE-----------TQPDIVITDINMPGMDGLDLIKAI 70 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh-----------cCCCEEEEecCCCCCcHHHHHHHH
Confidence 479999999999999999985 568875 589999999999964 589999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhhh
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETMEK 1098 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~~ 1098 (1099)
|+.. +.+-+|+|||..+-+.+.+|++.|+.|||.||++.++|.+++.++...+++
T Consensus 71 ke~~----p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~~ 125 (475)
T COG4753 71 KEQS----PDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLEE 125 (475)
T ss_pred HHhC----CCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHHH
Confidence 9753 467899999999999999999999999999999999999999999887764
No 50
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.69 E-value=2.6e-16 Score=182.62 Aligned_cols=120 Identities=28% Similarity=0.470 Sum_probs=112.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+...|+..||.|.++.|+.+|++.+.+ ..||+|++|+.||+|||++++++|++.
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~-----------~~~~lvl~Di~mp~~~Gl~ll~~i~~~ 73 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSE-----------SPFDLVLLDIRMPGMDGLELLKEIKSR 73 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-----------CCCCEEEEecCCCCCchHHHHHHHHhh
Confidence 469999999999999999999999999999999999999953 369999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
++++|||++|++.+.+..++|++.||.|||.|||++++|...|++.++...
T Consensus 74 ----~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 74 ----DPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred ----CCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 357999999999999999999999999999999999999999999988643
No 51
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.67 E-value=3.3e-16 Score=172.73 Aligned_cols=124 Identities=27% Similarity=0.372 Sum_probs=111.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
...+||+|||.+.++..+..+|+..||.+..|.+|++|++... ..++|+||+|++||+|||+|+|++|+
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~-----------~~~~dlvllD~~mp~mdg~ev~~~lk 81 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQ-----------EEPPDLVLLDVRMPEMDGAEVLNKLK 81 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhc-----------ccCCceEEeeccCCCccHHHHHHHHH
Confidence 3468999999999999999999999999999999999998874 34699999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
...+ ...++|+|++|+.++.++..+++++|+++||.||+++.+|..++...++.+
T Consensus 82 ~~~p-~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 82 AMSP-STRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred hcCC-cccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 8433 346799999999999999999999999999999999999999997665444
No 52
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.66 E-value=1.1e-14 Score=179.54 Aligned_cols=184 Identities=20% Similarity=0.213 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHHHHHHHHHHH
Q 001330 405 VRASLAAIIGLVELCHED-ANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYH 483 (1099)
Q Consensus 405 LRTPLt~I~g~~ell~~~-~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll~~v~~~~~~ 483 (1099)
+..+|+.+...+..+... ....++..+.+..|....+++...+.+++...+.. ..+.++.+.++++++.+..
T Consensus 373 i~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~-------~~~~~l~~~l~~~~~~~~~ 445 (569)
T PRK10600 373 IAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRLQ-------LTEPGLRPALEASCEEFSA 445 (569)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC-------cccCCHHHHHHHHHHHHHH
Confidence 445566666555544322 22335667889999999999999999999877643 3457899999999988875
Q ss_pred hHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhccccchhhccch
Q 001330 484 VGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSK 563 (1099)
Q Consensus 484 ~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1099)
.. ++.+.++...+.. .....++..+.||+.|+++||+||++.+.|.|++....
T Consensus 446 ~~---~~~i~~~~~~~~~---~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~~--------------------- 498 (569)
T PRK10600 446 RF---GFPVKLDYQLPPR---LVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQNQ--------------------- 498 (569)
T ss_pred Hh---CCeEEEEecCCcc---cCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEcC---------------------
Confidence 53 3444443211111 11122455699999999999999998888877654221
Q ss_pred hhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCC
Q 001330 564 LFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKG 643 (1099)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG 643 (1099)
..+.++|.|+|+|||++. ..|+|+||+|||++++.|||
T Consensus 499 ------------------------~~~~l~V~D~G~Gi~~~~------------------~~~~glGL~i~~~~~~~lgG 536 (569)
T PRK10600 499 ------------------------NQVKLSVQDNGCGVPENA------------------ERSNHYGLIIMRDRAQSLRG 536 (569)
T ss_pred ------------------------CEEEEEEEECCCCCCccc------------------cCCCCccHHHHHHHHHHcCC
Confidence 157899999999999863 13679999999999999999
Q ss_pred EEEEEecCCCceeEEEEEEEecc
Q 001330 644 EIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 644 ~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
+|.+.+.+ ++||+|++.+|..
T Consensus 537 ~l~i~s~~--~~Gt~v~i~lp~~ 557 (569)
T PRK10600 537 DCRVRRRE--SGGTEVVVTFIPE 557 (569)
T ss_pred EEEEEECC--CCCEEEEEEEecC
Confidence 99998765 3599999998864
No 53
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.66 E-value=1e-15 Score=154.30 Aligned_cols=119 Identities=24% Similarity=0.325 Sum_probs=109.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.-|.|||||...|+.+..+|+..||.+.+..++++-+... ....|-|+|+|+.||+|+|.|+-+++++.
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~-----------~~~~pGclllDvrMPg~sGlelq~~L~~~ 73 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA-----------PLDRPGCLLLDVRMPGMSGLELQDRLAER 73 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc-----------cCCCCCeEEEecCCCCCchHHHHHHHHhc
Confidence 4689999999999999999999999999999999988764 23468999999999999999999999875
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
+...|||++|++.+.....+++++||-|||.|||+.+.|.++|++.++..
T Consensus 74 ----~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 74 ----GIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARD 123 (202)
T ss_pred ----CCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999887764
No 54
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.65 E-value=2.1e-15 Score=144.18 Aligned_cols=111 Identities=29% Similarity=0.461 Sum_probs=104.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCC-eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 965 FLVVEDDAIVLKVTSAVLGKLGA-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 965 ILvVdDd~~~~~~l~~~L~~~G~-~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
||||||++..+..++..|+..|+ .+..+.++.+|++.+.+ ..||+|++|+.||+++|.+++++||+..
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~-----------~~~d~iiid~~~~~~~~~~~~~~i~~~~ 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK-----------HPPDLIIIDLELPDGDGLELLEQIRQIN 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH-----------STESEEEEESSSSSSBHHHHHHHHHHHT
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc-----------cCceEEEEEeeecccccccccccccccc
Confidence 79999999999999999999999 99999999999999854 4699999999999999999999999754
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~ 1090 (1099)
+.+|+|++|++.+.....+++++|+++||.||++.++|.++|+
T Consensus 70 ----~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 70 ----PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp ----TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ----ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 4689999999999999999999999999999999999999875
No 55
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.62 E-value=1.1e-14 Score=142.88 Aligned_cols=120 Identities=32% Similarity=0.479 Sum_probs=105.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHH-HHHHHHHHHhhhhhhcCCCC-CccEEEEecCCCCCCHHHHHHH
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGK-EAFDHVCKILSDLRKEGKAL-PYDYIMMDCEMPVMNGWEATRL 1038 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~-eAl~~l~~~~~~~~~~~~~~-~~DlIlmDi~MP~mdG~e~~r~ 1038 (1099)
.+.+||+|||++..+..+..+|...|+.+..+.+|. +|++.+.+ . .||+|++|++||+|||++++++
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~-----------~~~~dlii~D~~mp~~~G~~~~~~ 72 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRE-----------LPQPDLILLDINMPGMDGIELLRR 72 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHh-----------CCCCCEEEEeCCCCCCCHHHHHHH
Confidence 346899999999999999999999999999999996 99999853 3 4999999999999999999999
Q ss_pred HhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHHHH
Q 001330 1039 IRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDK-LLDVVKSIDET 1095 (1099)
Q Consensus 1039 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~-L~~~l~~i~~~ 1095 (1099)
+|+. ...+|+|++|++.......+++++|+++|+.||+...+ |..+++++...
T Consensus 73 l~~~----~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 73 LRAR----GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred HHhC----CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 9975 24578899999999888888899999999999977666 78888766554
No 56
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.62 E-value=5.2e-15 Score=152.18 Aligned_cols=119 Identities=21% Similarity=0.286 Sum_probs=106.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhc-CCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKL-GAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~-G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
+|||||||+.+.++-+..+++. ||.+ -+|.++++|..++.+ ..|||||+|+.||+.+|++++..||+
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~-----------~~pDLILLDiYmPd~~Gi~lL~~ir~ 70 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE-----------FKPDLILLDIYMPDGNGIELLPELRS 70 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh-----------hCCCEEEEeeccCCCccHHHHHHHHh
Confidence 6999999999999999999876 6765 589999999999853 46899999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
.. ..+-||++||..+.+.+.++++.|+-|||.|||..+.|.+++.+..+.+.
T Consensus 71 ~~----~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~ 122 (224)
T COG4565 71 QH----YPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRH 122 (224)
T ss_pred cC----CCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHH
Confidence 53 34679999999999999999999999999999999999999998876654
No 57
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.60 E-value=1.3e-14 Score=167.34 Aligned_cols=124 Identities=27% Similarity=0.413 Sum_probs=114.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
...+||+|||+...+..++.+|...|+.+..|.++++|+..+. +.+||+||.|+.||+|||+++|+++|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~-----------e~~~dlil~d~~mp~~dg~el~~~lr 199 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLA-----------ELPPDLVLLDANMPDMDGLELCTRLR 199 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHh-----------cCCCcEEEEecCCCccCHHHHHHHHh
Confidence 3468999999999999999999999999999999999999985 34899999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
..... ..+|||++++..+.+...++++.|++||++||+...+|..++++.++.+.
T Consensus 200 ~~~~t--~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 200 QLERT--RDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred ccccc--ccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhh
Confidence 87654 57999999999999999999999999999999999999999988877654
No 58
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.58 E-value=1.4e-13 Score=168.65 Aligned_cols=146 Identities=23% Similarity=0.340 Sum_probs=108.3
Q ss_pred ecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHH---HHHHHHhHhhccC-------------C
Q 001330 468 FNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQI---LCNLVSNSMKFTS-------------E 531 (1099)
Q Consensus 468 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QI---L~NLL~NAiKfT~-------------~ 531 (1099)
+.+..++...-..++..+...|.++.+..... .+..|+..+.++ |.||+.||++|+- .
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~------~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~ 416 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS------STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSV 416 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC------ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCC
Confidence 34667777777777776665555554443221 256799999999 6799999999962 2
Q ss_pred CeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHh----
Q 001330 532 GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN---- 607 (1099)
Q Consensus 532 G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~---- 607 (1099)
|.|.+++.... ..+.|+|.|+|.||+++.+.
T Consensus 417 G~I~l~a~~~~---------------------------------------------~~v~I~V~DdG~GId~e~i~~~a~ 451 (670)
T PRK10547 417 GNLILSAEHQG---------------------------------------------GNICIEVTDDGAGLNRERILAKAA 451 (670)
T ss_pred CceEEEEEEcC---------------------------------------------CEEEEEEEeCCCCCCHHHHHHHHH
Confidence 55666553221 15789999999999997653
Q ss_pred -----------------hhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 608 -----------------SIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 608 -----------------~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
.||+|||...... +..+|.|+||+|||++++.|||+|++.|.. |+||+|++.+|+..
T Consensus 452 ~~Gl~~~~~ls~~e~~~lIF~pgfst~~~~-~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~--g~Gt~f~i~LPltl 525 (670)
T PRK10547 452 SQGLAVSENMSDEEVGMLIFAPGFSTAEQV-TDVSGRGVGMDVVKRNIQEMGGHVEIQSKQ--GKGTTIRILLPLTL 525 (670)
T ss_pred HcCCCccccCCHHHHHHHhhcCCccccccc-ccCCCCchhHHHHHHHHHHcCCEEEEEecC--CCcEEEEEEEechh
Confidence 6999977664432 234699999999999999999999998765 47999999999865
No 59
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.56 E-value=4.5e-14 Score=151.58 Aligned_cols=115 Identities=28% Similarity=0.412 Sum_probs=104.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcC-CeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLG-AKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G-~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
+||||||++..+..++.+|+..+ ++| ..+.||.+|++.+. ..+||+|+||+.||+|||+++++.||+
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~-----------~~~pdvvl~Dl~mP~~~G~e~~~~l~~ 70 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAR-----------ELKPDVVLLDLSMPGMDGLEALKQLRA 70 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhh-----------hcCCCEEEEcCCCCCCChHHHHHHHHH
Confidence 69999999999999999998776 775 46788999999863 358999999999999999999999995
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~ 1093 (1099)
. .++++|+++|++.+.....+++++|+++|+.|..++++|.++|+.+.
T Consensus 71 ~----~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~ 118 (211)
T COG2197 71 R----GPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVA 118 (211)
T ss_pred H----CCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 4 35679999999999999999999999999999999999999999875
No 60
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.56 E-value=1.5e-13 Score=164.02 Aligned_cols=120 Identities=19% Similarity=0.307 Sum_probs=106.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
...+||+|||++..+..+..+|.. .+.+..+.++.+|++.+. ..+||+|++|+.||+|+|++++++||
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~-----------~~~~d~vi~d~~~p~~~g~~l~~~i~ 221 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAA-----------ETNYDLVIVSANFENYDPLRLCSQLR 221 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcc-----------cCCCCEEEecCCCCCchHhHHHHHHH
Confidence 346899999999999999999965 577778999999998863 35799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
+... .+.+|||++|++.+.+...+|+++|++||+.||+++++|...|....+
T Consensus 222 ~~~~--~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~ 273 (457)
T PRK09581 222 SKER--TRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIR 273 (457)
T ss_pred hccc--cCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHH
Confidence 7432 257999999999999999999999999999999999999999876544
No 61
>PLN03029 type-a response regulator protein; Provisional
Probab=99.54 E-value=1.3e-13 Score=149.49 Aligned_cols=133 Identities=18% Similarity=0.288 Sum_probs=109.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhh---------hhhcCCCCCccEEEEecCCCCCCH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSD---------LRKEGKALPYDYIMMDCEMPVMNG 1032 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~---------~~~~~~~~~~DlIlmDi~MP~mdG 1032 (1099)
..+||+|||++..+..+..+|+..|+.|..+.+|.+|++.+.....+ .........||+||+|+.||+|+|
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G 87 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTG 87 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCH
Confidence 46899999999999999999999999999999999999987421000 000011235899999999999999
Q ss_pred HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
+++++.||+... ...+|||++|+....+...+|+++|+++||.||++..+|...+..+.+..
T Consensus 88 ~e~l~~ir~~~~--~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 88 YDLLKKIKESSS--LRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHhccc--cCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 999999997532 23689999999999999999999999999999999999987776655443
No 62
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.50 E-value=4.5e-13 Score=145.47 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=104.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhc-CCe-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKL-GAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~-G~~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+||||||++..+..+...|+.. |+. +..+.++.+|++.+.+ ..||+|++|+.||+++|+++++.||
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~-----------~~pdlvllD~~mp~~~gle~~~~l~ 73 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER-----------FKPGLILLDNYLPDGRGINLLHELV 73 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh-----------cCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 58999999999999999999864 775 6789999999998843 4699999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
+.. ..+|||++|+..+.+...+++++|+++|+.||++.++|..+|+++..
T Consensus 74 ~~~----~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 123 (225)
T PRK10046 74 QAH----YPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 (225)
T ss_pred hcC----CCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHH
Confidence 642 34789999999999999999999999999999999999999988644
No 63
>PRK11173 two-component response regulator; Provisional
Probab=99.48 E-value=6.1e-13 Score=144.92 Aligned_cols=117 Identities=19% Similarity=0.274 Sum_probs=107.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||+|||++..+..+...|+..|+.+..+.++.+|++.+. ...||+|++|+.||+++|+++++.+|+.
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-----------~~~~dlvild~~l~~~~g~~~~~~lr~~ 72 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-----------ENDINLVIMDINLPGKNGLLLARELREQ 72 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-----------hCCCCEEEEcCCCCCCCHHHHHHHHhcC
Confidence 48999999999999999999999999999999999998874 2479999999999999999999999963
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
..+|+|++|++........++++|+++|+.||++.++|..+++++++.
T Consensus 73 -----~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r 120 (237)
T PRK11173 73 -----ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred -----CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 258999999999999999999999999999999999999999887764
No 64
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.47 E-value=8.6e-13 Score=142.12 Aligned_cols=117 Identities=23% Similarity=0.284 Sum_probs=106.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||+|||++..+..+...|+..|+.+..+.++.+|+..+. ...||+|++|+.||+++|+++++.||+.
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-----------~~~~dlvild~~l~~~~g~~~~~~lr~~ 70 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-----------TRKPDLIILDLGLPDGDGIEFIRDLRQW 70 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 37999999999999999999999999999999999988763 2469999999999999999999999963
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
..+|+|++|+..+.+...+++++|+++|+.||++.++|..+++.+++.
T Consensus 71 -----~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~ 118 (225)
T PRK10529 71 -----SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred -----CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999999999999999999999999999999999999887764
No 65
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.47 E-value=8.6e-13 Score=142.04 Aligned_cols=117 Identities=25% Similarity=0.353 Sum_probs=107.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+. ...||+|++|+.||+++|+++++.+|+..
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-----------~~~~dlvild~~l~~~~g~~l~~~lr~~~ 70 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN-----------EHLPDIAIVDLGLPDEDGLSLIRRWRSND 70 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------hCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999998874 24799999999999999999999999642
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+++|||++|+..+.+....++++|+++|+.||++.++|..+++.+++.
T Consensus 71 ----~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 71 ----VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred ----CCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999999999987654
No 66
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.46 E-value=1.3e-12 Score=140.95 Aligned_cols=117 Identities=28% Similarity=0.447 Sum_probs=107.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
+||++||++..+..+...|+..|+.+..+.++.+|++.+. ...||+|++|+.||+++|+++++.+|+..
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-----------~~~~dlvild~~~~~~~g~~~~~~lr~~~ 70 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM-----------TGDYDLIILDIMLPDVNGWDIVRMLRSAN 70 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------hCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 6999999999999999999999999999999999998773 24699999999999999999999999642
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+.+|||++|+....+...+++++|+++|+.||++.++|..+++.+++.
T Consensus 71 ----~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 71 ----KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred ----CCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999999999987653
No 67
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.45 E-value=1.7e-13 Score=145.90 Aligned_cols=118 Identities=30% Similarity=0.468 Sum_probs=103.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
+|+||||+......+..+|++.|..+-.|....+|++.+.. ..||+||+|+.||+|+|+|+++++|...
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~-----------~kpDLifldI~mp~~ngiefaeQvr~i~ 70 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV-----------FKPDLIFLDIVMPYMNGIEFAEQVRDIE 70 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh-----------cCCCEEEEEeecCCccHHHHHHHHHHhh
Confidence 69999999999999999999999889999999999999853 5799999999999999999999999865
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhhh
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETMEK 1098 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~~ 1098 (1099)
+.+|||++|+++.-. ..+.+.-.+|||.||++++.|..+|.+...+.+.
T Consensus 71 ----~~v~iifIssh~eya--~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve~ 119 (361)
T COG3947 71 ----SAVPIIFISSHAEYA--DDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVEL 119 (361)
T ss_pred ----ccCcEEEEecchhhh--hhhcccchHhhccCCCCHHHHHHHHHHHhccccc
Confidence 469999999986443 4455555689999999999999999998876653
No 68
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.44 E-value=1.9e-12 Score=138.96 Aligned_cols=117 Identities=24% Similarity=0.251 Sum_probs=107.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||+|||++.....+...|+..|+.+..+.++.+|++.+. ...||+|++|+.||+++|+++++.+|+.
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvild~~l~~~~g~~~~~~lr~~ 71 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQ-----------NQHVDLILLDINLPGEDGLMLTRELRSR 71 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 47999999999999999999999999999999999998874 2469999999999999999999999963
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
..+|+|++|+..+.....+++++|+++|+.||++..+|..++..+++.
T Consensus 72 -----~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r 119 (221)
T PRK10766 72 -----STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWR 119 (221)
T ss_pred -----CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999999999999999999999999999999999999887654
No 69
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.44 E-value=2.3e-12 Score=137.85 Aligned_cols=117 Identities=24% Similarity=0.342 Sum_probs=106.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
+||+|||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||+++|+++++.+|+..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------~~~d~illd~~~~~~~g~~~~~~l~~~~ 70 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES-----------GHYSLVVLDLGLPDEDGLHLLRRWRQKK 70 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-----------CCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 69999999999999999999999999999999999987742 4689999999999999999999999642
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+.+|+|++|+..+.+....++++|+++|+.||++.++|..+++.+++.
T Consensus 71 ----~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (222)
T PRK10643 71 ----YTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRR 118 (222)
T ss_pred ----CCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhh
Confidence 458999999999999999999999999999999999999999887654
No 70
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.43 E-value=4.6e-13 Score=158.88 Aligned_cols=117 Identities=16% Similarity=0.309 Sum_probs=86.8
Q ss_pred EEccHHHHHHHHHHHHHhHhhccCCCe----EEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccc
Q 001330 507 VRGDRVKLKQILCNLVSNSMKFTSEGH----ISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVE 582 (1099)
Q Consensus 507 v~gD~~rL~QIL~NLL~NAiKfT~~G~----I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (1099)
+.++...|.|++.|||+||++|++.++ |.|.+....
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~---------------------------------------- 69 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVD---------------------------------------- 69 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEcc----------------------------------------
Confidence 345678899999999999999997643 554432210
Q ss_pred cCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCC--CCCCCccccHHHHHHHHHhcCCE-EEEEecCCCceeEEE
Q 001330 583 RNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL--GHQEGLGLGLGIVQSMVHLMKGE-IAIADKEPGERGVCF 659 (1099)
Q Consensus 583 ~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~--~~~~GtGLGLaIvk~lVe~~gG~-I~v~s~~~gg~Gt~f 659 (1099)
.+...+.|.|.|+|+||++++++++|++|++....+. ...+|+||||++|+.++++|+|. |+|.|..+++. .+|
T Consensus 70 --~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~-~~~ 146 (535)
T PRK04184 70 --EGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSK-KAY 146 (535)
T ss_pred --CCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCc-eEE
Confidence 0112578999999999999999999999977654322 23368999999999999999997 99988765432 256
Q ss_pred EEEEecc
Q 001330 660 RFNVLLT 666 (1099)
Q Consensus 660 ~~~l~l~ 666 (1099)
+|.++++
T Consensus 147 ~~~l~id 153 (535)
T PRK04184 147 YFELKID 153 (535)
T ss_pred EEEEEec
Confidence 6666554
No 71
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.43 E-value=2.3e-12 Score=140.30 Aligned_cols=118 Identities=23% Similarity=0.301 Sum_probs=107.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+|||+||++..+..+...|+..|+.+..+.++.++++.+. ...||+|++|+.||.++|+++++.||+.
T Consensus 6 ~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-----------~~~~dlvild~~l~~~~g~~~~~~lr~~ 74 (239)
T PRK09468 6 YKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLT-----------RESFHLMVLDLMLPGEDGLSICRRLRSQ 74 (239)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 58999999999999999999999999999999999988873 3479999999999999999999999964
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
. +.+|||++|+..+.+....++++|+++|+.||++.++|..+++.+++.
T Consensus 75 ~----~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 75 N----NPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred C----CCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 2 468999999999999999999999999999999999999999987653
No 72
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.43 E-value=2.8e-12 Score=138.66 Aligned_cols=120 Identities=23% Similarity=0.332 Sum_probs=108.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
++||+|||++..+..+...|+..|+++..+.++.+|++.+. ...||+|++|+.||+++|+++++.+|+.
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-----------~~~~dlvild~~l~~~~g~~~~~~l~~~ 71 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-----------EPWPDLILLDWMLPGGSGIQFIKHLKRE 71 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------ccCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 57999999999999999999999999999999999998774 2469999999999999999999999964
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.. .+.+|||++|+..+.....+++++|+++|+.||++.++|..+++.+++.
T Consensus 72 ~~--~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 72 SM--TRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred cc--cCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 21 2468999999999999999999999999999999999999999987654
No 73
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.42 E-value=3.1e-12 Score=139.89 Aligned_cols=116 Identities=16% Similarity=0.247 Sum_probs=104.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
+||+|||++..+..+...|+..|+.+..+.++.++++.+. ...||+|++|+.||+++|+++++.+|..
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvi~d~~l~~~~g~~l~~~i~~~- 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLA-----------SETVDVVVVDLNLGREDGLEIVRSLATK- 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-----------hCCCCEEEEeCCCCCCCHHHHHHHHHhc-
Confidence 7999999999999999999999999999999999998874 2479999999999999999999999853
Q ss_pred cccCCCccEEEEecc-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1044 EQYDVHIPIIALTAH-AMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~-~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
..+|+|++|+. .......+++++|+++|+.||++.++|..+++.+++.
T Consensus 71 ----~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~ 119 (241)
T PRK13856 71 ----SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRV 119 (241)
T ss_pred ----CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhh
Confidence 25899999985 4667788999999999999999999999999887764
No 74
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.42 E-value=3.3e-12 Score=136.94 Aligned_cols=120 Identities=29% Similarity=0.412 Sum_probs=107.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||+|||++..+..+...|+..|+.+..+.++.++++.+.+ ..||+|++|+.||+++|+++++.||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------~~~d~vi~d~~~~~~~g~~~~~~l~~~ 71 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE-----------RGPDLILLDWMLPGTSGIELCRRLRRR 71 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh-----------cCCCEEEEECCCCCCcHHHHHHHHHcc
Confidence 579999999999999999999899999999999999988742 469999999999999999999999964
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.. .+.+|||++|+..+.....+++++|+++|+.||++.++|..+++.+++.
T Consensus 72 ~~--~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 72 PE--TRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred cc--CCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 32 2358999999999999999999999999999999999999999887653
No 75
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.41 E-value=4e-12 Score=139.37 Aligned_cols=117 Identities=20% Similarity=0.310 Sum_probs=102.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhh-cCCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGK-LGAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~-~G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
+||||||++..+..+..+|.. .|+.+ ..+.++.+|++.+.. ....||+||+|+.||+|+|+++++.||+
T Consensus 3 ~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~DlvilD~~~p~~~G~eli~~l~~ 73 (239)
T PRK10430 3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFN---------SDTPIDLILLDIYMQQENGLDLLPVLHE 73 (239)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---------cCCCCCEEEEecCCCCCCcHHHHHHHHh
Confidence 799999999999999999986 36764 478999999887731 1246999999999999999999999996
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~ 1093 (1099)
.. +.+|||++|+..+.+...+++++|+++|+.||++.++|..+|.++.
T Consensus 74 ~~----~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~ 121 (239)
T PRK10430 74 AG----CKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 (239)
T ss_pred hC----CCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 42 4689999999999999999999999999999999999999998753
No 76
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.41 E-value=4e-12 Score=137.11 Aligned_cols=118 Identities=21% Similarity=0.227 Sum_probs=106.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC--CCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV--MNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~--mdG~e~~r~IR 1040 (1099)
++||+|||++..+..+...|+..|+.+..+.++.+++..+.+ ..||+|++|+.||+ ++|+++++.+|
T Consensus 1 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------~~~dlvild~~l~~~~~~g~~~~~~i~ 69 (227)
T TIGR03787 1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ-----------RLPDLAIIDIGLGEEIDGGFMLCQDLR 69 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh-----------CCCCEEEEECCCCCCCCCHHHHHHHHH
Confidence 379999999999999999999999999999999999988742 46999999999998 58999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+.. +.+|+|++|+....+....++++|+++|+.||++.++|..+++.+++.
T Consensus 70 ~~~----~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 120 (227)
T TIGR03787 70 SLS----ATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRR 120 (227)
T ss_pred hcC----CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 642 358999999999999999999999999999999999999999988764
No 77
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.41 E-value=3.9e-12 Score=138.73 Aligned_cols=116 Identities=23% Similarity=0.201 Sum_probs=105.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+. ...||+|++|+.||+++|+++++.||+.
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-----------~~~~dlvild~~l~~~~g~~~~~~ir~~- 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATIL-----------REQPDLVLLDIMLPGKDGMTICRDLRPK- 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHh-----------hCCCCEEEEeCCCCCCCHHHHHHHHHhc-
Confidence 7999999999999999999999999999999999998874 2479999999999999999999999963
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
..+|+|++|+........+++++|+++|+.||++..+|..+++.+++.
T Consensus 71 ----~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 71 ----WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred ----CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 247999999999988899999999999999999999999999887654
No 78
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.41 E-value=4.5e-12 Score=135.47 Aligned_cols=117 Identities=22% Similarity=0.373 Sum_probs=106.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
+||+|||++..+..+...|+..|+++..+.++.++++.+. ...||+|++|+.||+++|+++++.||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvild~~l~~~~g~~~~~~i~~~- 69 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY-----------SAPYDAVILDLTLPGMDGRDILREWREK- 69 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-----------hCCCCEEEEECCCCCCCHHHHHHHHHhc-
Confidence 6999999999999999999999999999999999988773 2468999999999999999999999964
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.+.+|||++|+..+.+...+++++|+++|+.||++.++|..+++.+.+.
T Consensus 70 ---~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (219)
T PRK10336 70 ---GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 (219)
T ss_pred ---CCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhc
Confidence 2468999999999999999999999999999999999999999887653
No 79
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.40 E-value=4.7e-12 Score=136.74 Aligned_cols=115 Identities=26% Similarity=0.380 Sum_probs=104.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
+||+|||++..+..+...|+..|+.+..+.++.++++.+. ..||+|++|+.||+++|+++++.||+..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~------------~~~d~vl~d~~~~~~~g~~~~~~l~~~~ 70 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD------------DSIDLLLLDVMMPKKNGIDTLKELRQTH 70 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh------------cCCCEEEEeCCCCCCcHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999988762 2599999999999999999999999642
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
. +|||++|+..+.....+++++|+++|+.||++.++|..+++.+++.
T Consensus 71 ----~-~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (232)
T PRK10955 71 ----Q-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 (232)
T ss_pred ----C-CcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhc
Confidence 2 7999999999998899999999999999999999999999887653
No 80
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.39 E-value=7.6e-12 Score=134.26 Aligned_cols=115 Identities=24% Similarity=0.407 Sum_probs=105.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
+||+|||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||+++|+++++.+|+.
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~-----------~~~~dlvi~d~~~~~~~g~~~~~~l~~~- 69 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL-----------KDDYALIILDIMLPGMDGWQILQTLRTA- 69 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------cCCCCEEEEECCCCCCCHHHHHHHHHcC-
Confidence 7999999999999999999999999999999999998773 2479999999999999999999999963
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
..+|||++|+..+.+...+++++|+++|+.||++.++|..+++.++.
T Consensus 70 ----~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 116 (223)
T PRK11517 70 ----KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred ----CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 24799999999999999999999999999999999999999988764
No 81
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.38 E-value=5.6e-12 Score=118.53 Aligned_cols=109 Identities=37% Similarity=0.650 Sum_probs=89.5
Q ss_pred ccHHHHHHHHHHHHHhHhhccCC-CeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCc
Q 001330 509 GDRVKLKQILCNLVSNSMKFTSE-GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNL 587 (1099)
Q Consensus 509 gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (1099)
+|+..|.+++.|+++||++++.. +.|.+.++..+.
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~-------------------------------------------- 36 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDGD-------------------------------------------- 36 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC--------------------------------------------
Confidence 47889999999999999999986 667776643221
Q ss_pred eeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 588 LQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 588 ~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
.+.+.|.|+|.|++++..+++|+++++.+. .....++.|+||++|+++++.|+|++.+.+.+. .|++|+|.+|+
T Consensus 37 -~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~--~g~~~~~~~~~ 110 (111)
T smart00387 37 -HLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVESEPG--GGTTFTITLPL 110 (111)
T ss_pred -EEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEEecCC--CcEEEEEEeeC
Confidence 578999999999999999999999987653 222345899999999999999999999976543 58888888876
No 82
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.38 E-value=8.9e-12 Score=133.93 Aligned_cols=118 Identities=24% Similarity=0.323 Sum_probs=106.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||+|||++..+..+...|...|+.+..+.++.++++.+. ...||+|++|+.||+++|+++++.+|+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvl~d~~~~~~~g~~~~~~l~~~ 72 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLR-----------QQPPDLVILDVGLPDISGFELCRQLLAF 72 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 47999999999999999999999999999999999988773 2469999999999999999999999964
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
. +.+|||++|+.........++++|+++|+.||++.++|..+++.+.+.
T Consensus 73 ~----~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 73 H----PALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred C----CCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 2 468999999999988899999999999999999999999999887553
No 83
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.38 E-value=4e-12 Score=123.23 Aligned_cols=114 Identities=23% Similarity=0.320 Sum_probs=105.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
+..||||||..+...+...+++.||.|.+|.+..||+..++ ..+|...++|+.|.+.+|+++++.||+.
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~ar-----------t~~PayAvvDlkL~~gsGL~~i~~lr~~ 78 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAAR-----------TAPPAYAVVDLKLGDGSGLAVIEALRER 78 (182)
T ss_pred ceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHh-----------cCCCceEEEEeeecCCCchHHHHHHHhc
Confidence 36899999999999999999999999999999999999985 3589999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKS 1091 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~ 1091 (1099)
. .+..||++|++++....+++.+.|+++||.||-+.+++..++.+
T Consensus 79 ~----~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 79 R----ADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred C----CcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 3 46789999999999999999999999999999999999888754
No 84
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.37 E-value=6.9e-12 Score=139.29 Aligned_cols=119 Identities=18% Similarity=0.314 Sum_probs=104.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhc-CCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKL-GAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~-G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+||+|||++..+..+...|... ++.+ ..+.+|.+|++.+.. ..||+|++|+.||+|||+++++.+|
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~-----------~~~DlvllD~~mp~~dG~~~l~~i~ 71 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE-----------QQPDVVVLDIIMPHLDGIGVLEKLN 71 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh-----------cCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 58999999999999999999864 4554 478999999998843 4799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
+... ...+|||++|+........+++++|+++|+.||++.++|..+++++..
T Consensus 72 ~~~~--~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~ 123 (262)
T TIGR02875 72 EIEL--SARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAW 123 (262)
T ss_pred hhcc--ccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 7532 124799999999999999999999999999999999999999988754
No 85
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.37 E-value=8.3e-12 Score=134.52 Aligned_cols=118 Identities=17% Similarity=0.242 Sum_probs=103.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCC-e-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC---CCHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGA-K-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV---MNGWEAT 1036 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~-~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~---mdG~e~~ 1036 (1099)
+.+||||||++..+..++..|+..++ . +..+.++.++++.+.+ ..||+||+|+.||+ ++|.+++
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-----------~~~DlvllD~~l~~~~~~~g~~~~ 71 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK-----------LDAHVLITDLSMPGDKYGDGITLI 71 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh-----------CCCCEEEEeCcCCCCCCCCHHHHH
Confidence 35899999999999999999987665 3 6678999999988742 36999999999999 5999999
Q ss_pred HHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1037 RLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1037 r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
++||.. .+.+|||++|++.+......++++|+++|+.||.+.++|..+|+.+..
T Consensus 72 ~~l~~~----~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 72 KYIKRH----FPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred HHHHHH----CCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 999864 346899999999999999999999999999999999999999987653
No 86
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.36 E-value=1.8e-11 Score=132.96 Aligned_cols=118 Identities=28% Similarity=0.410 Sum_probs=106.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
..+||++||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||+++|+++++.+|+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~-----------~~~~d~illd~~~~~~~g~~~~~~l~~ 74 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFR-----------KEQPDLVILDVMMPKLDGYGVCQEIRK 74 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 358999999999999999999999999999999999998774 246999999999999999999999996
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
. ..+|||++|++...+....++++|+++|+.||++.++|..+++.+.+.
T Consensus 75 ~-----~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 123 (240)
T CHL00148 75 E-----SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRR 123 (240)
T ss_pred c-----CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 3 258999999999999999999999999999999999999999887654
No 87
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.35 E-value=1.3e-11 Score=131.67 Aligned_cols=116 Identities=28% Similarity=0.442 Sum_probs=105.3
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcccc
Q 001330 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044 (1099)
Q Consensus 965 ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~ 1044 (1099)
||++||++..+..+...|+..|+.+..+.++.++++.+. ...||+|++|+.||+++|+++++.+|+.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvl~d~~~~~~~g~~~~~~l~~~-- 67 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLAL-----------KDDYDLIILDVMLPGMDGWQILQTLRRS-- 67 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHHcc--
Confidence 589999999999999999999999999999999998874 3479999999999999999999999964
Q ss_pred ccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1045 ~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.+.+|||++|+..+.+...+++++|+++|+.||++.++|..+++.+++.
T Consensus 68 --~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 116 (218)
T TIGR01387 68 --GKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRR 116 (218)
T ss_pred --CCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 2468999999999999999999999999999999999999999887643
No 88
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.34 E-value=1.5e-11 Score=148.33 Aligned_cols=118 Identities=25% Similarity=0.341 Sum_probs=108.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+...|+..|+.+..+.++.+|+..+. ...||+||+|+.||++||+++++.||..
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~-----------~~~~DlvllD~~lp~~dgl~~l~~ir~~ 72 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALA-----------SKTPDVLLSDIRMPGMDGLALLKQIKQR 72 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-----------cCCCCEEEECCCCCCCCHHHHHHHHHhh
Confidence 48999999999999999999999999999999999999884 3479999999999999999999999964
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
. +.+|+|++|++...+....++++|+++|+.||++.++|...+.++++.
T Consensus 73 ~----~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 73 H----PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred C----CCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 2 468999999999999999999999999999999999999999887654
No 89
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.34 E-value=1.9e-11 Score=129.36 Aligned_cols=116 Identities=18% Similarity=0.281 Sum_probs=104.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
+||++||++..+..+...|+..|+.+. .+.++.++++.+. ...||+|++|+.||+++|+++++.+|..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 70 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-----------TLKPDIVIIDVDIPGVNGIQVLETLRKR 70 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH-----------ccCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 699999999999999999998999987 6999999998874 2469999999999999999999999964
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
. +.+|||++|+.........++++|+++|+.||++.++|..+++.+.+
T Consensus 71 ~----~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 71 Q----YSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred C----CCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHc
Confidence 2 35789999999999999999999999999999999999999988754
No 90
>PRK15115 response regulator GlrR; Provisional
Probab=99.32 E-value=1.8e-11 Score=146.56 Aligned_cols=118 Identities=28% Similarity=0.360 Sum_probs=108.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+...|+..|+.+..+.++.+|++.+. ...||+||+|+.||+|+|+++++.+++.
T Consensus 6 ~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~-----------~~~~dlvilD~~lp~~~g~~ll~~l~~~ 74 (444)
T PRK15115 6 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLN-----------REKVDLVISDLRMDEMDGMQLFAEIQKV 74 (444)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-----------cCCCCEEEEcCCCCCCCHHHHHHHHHhc
Confidence 68999999999999999999999999999999999998874 3468999999999999999999999864
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.+.+|||++|+..+.+...+++++|+++|+.||++.++|..++..+++.
T Consensus 75 ----~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 75 ----QPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred ----CCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999999999999999999999999887653
No 91
>PRK14084 two-component response regulator; Provisional
Probab=99.31 E-value=2.6e-11 Score=133.12 Aligned_cols=115 Identities=24% Similarity=0.336 Sum_probs=99.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcC-C-eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLG-A-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G-~-~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
+||++||++..+..+..+|+..+ + .+..+.++++|++.+.+ ..||+||+|+.||+++|+++++.||+
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~-----------~~~dlv~lDi~m~~~~G~~~~~~i~~ 70 (246)
T PRK14084 2 KALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI-----------NQYDIIFLDINLMDESGIELAAKIQK 70 (246)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh-----------cCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 79999999999999999998766 4 46789999999988742 36999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.. ..+|||++|++. +...++++.|+++|+.||++.++|.++++++.+.
T Consensus 71 ~~----~~~~iI~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 71 MK----EPPAIIFATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred cC----CCCEEEEEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 42 346788888864 4567899999999999999999999999987654
No 92
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.31 E-value=1.4e-11 Score=148.71 Aligned_cols=111 Identities=20% Similarity=0.285 Sum_probs=80.4
Q ss_pred EEccHHHHHHHHHHHHHhHhhccCCCe----EEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccc
Q 001330 507 VRGDRVKLKQILCNLVSNSMKFTSEGH----ISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVE 582 (1099)
Q Consensus 507 v~gD~~rL~QIL~NLL~NAiKfT~~G~----I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (1099)
+..|...|.+++.|||+||++|+..++ |.|.+...
T Consensus 40 fD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~----------------------------------------- 78 (795)
T PRK14868 40 FDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEEV----------------------------------------- 78 (795)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEEC-----------------------------------------
Confidence 345688899999999999999997653 55444211
Q ss_pred cCCCceeEEEEEEeCCCCCCcccHhhhcccccccccc----CCCCCCCccccHHHHHHHHHhcCCEEEEEecCCC-ceeE
Q 001330 583 RNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET----ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG-ERGV 657 (1099)
Q Consensus 583 ~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s----~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~g-g~Gt 657 (1099)
...+.|.|.|+|+||++++++++|++|+++.+- .++...|.||||+++...+. +||.|+|.|+..+ +.|+
T Consensus 79 ----g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLglai~~sqlt-~GgpI~I~S~~~~~~~g~ 153 (795)
T PRK14868 79 ----GDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLT-SGKPAKITSRTQGSEEAQ 153 (795)
T ss_pred ----CCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHHHHHHHHc-CCCcEEEEeCCCCCCcee
Confidence 014789999999999999999999999866431 12223477777777777763 7999999988654 2355
Q ss_pred EEEEEE
Q 001330 658 CFRFNV 663 (1099)
Q Consensus 658 ~f~~~l 663 (1099)
.|.+.+
T Consensus 154 ~~~L~I 159 (795)
T PRK14868 154 YFELII 159 (795)
T ss_pred EEEEEE
Confidence 455555
No 93
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.30 E-value=2.7e-11 Score=145.55 Aligned_cols=118 Identities=26% Similarity=0.377 Sum_probs=107.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
..+||||||++..+..+...|+..|+.+..+.++.+|++.+. ...||+|++|+.||+++|+++++.+|+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-----------~~~~dlillD~~~p~~~g~~ll~~i~~ 72 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFA-----------DIHPDVVLMDIRMPEMDGIKALKEMRS 72 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 358999999999999999999999999999999999998874 346999999999999999999999996
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
.. +.+|+|++|+..+.+...+++++|+++|+.||++.++|...+++.++
T Consensus 73 ~~----~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 73 HE----TRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred cC----CCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 42 46899999999999999999999999999999999999999987654
No 94
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.28 E-value=2.5e-11 Score=145.14 Aligned_cols=118 Identities=25% Similarity=0.364 Sum_probs=107.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+...|+..|+.+..+.++.+|++.+. ...||+||+|+.||+++|+++++.+|+.
T Consensus 6 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-----------~~~~DlvilD~~m~~~~G~~~~~~ir~~ 74 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR-----------EQVFDLVLCDVRMAEMDGIATLKEIKAL 74 (441)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 58999999999999999999999999999999999998874 2469999999999999999999999974
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.+.+|||++|++...+...+++++|+.+|+.||++.++|...+++.++.
T Consensus 75 ----~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 75 ----NPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred ----CCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 2468999999999999999999999999999999999999999887653
No 95
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.28 E-value=2.9e-11 Score=144.84 Aligned_cols=113 Identities=21% Similarity=0.204 Sum_probs=102.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-----CCHHHHHHHH
Q 001330 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-----MNGWEATRLI 1039 (1099)
Q Consensus 965 ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-----mdG~e~~r~I 1039 (1099)
||||||++..+..+...| .||.+..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.+
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~-----------~~~dlvllD~~mp~~~~~~~~g~~~l~~i 67 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR-----------HEPAVVTLDLGLPPDADGASEGLAALQQI 67 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh-----------CCCCEEEEeCCCCCCcCCCCCHHHHHHHH
Confidence 689999999999999888 68999999999999998843 47999999999996 8999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
++. .+++|||++|++.+.+...+++++|+++|+.||++.++|..+|++..+
T Consensus 68 ~~~----~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 68 LAI----APDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred Hhh----CCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 864 346899999999999999999999999999999999999999987655
No 96
>PRK09483 response regulator; Provisional
Probab=99.28 E-value=5e-11 Score=127.49 Aligned_cols=116 Identities=27% Similarity=0.395 Sum_probs=103.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhc-CCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKL-GAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~-G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
+|||+||++..+..+...|+.. |+.+. .+.++.++++.+.. .+||+|++|+.||+++|+++++.+++
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-----------~~~dlvi~d~~~~~~~g~~~~~~l~~ 71 (217)
T PRK09483 3 NVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT-----------NAVDVVLMDMNMPGIGGLEATRKILR 71 (217)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh-----------cCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 7999999999999999999874 78875 78999999988742 46999999999999999999999986
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
. .+.+|+|++|..........++..|+++|+.||++.++|..+++++.+
T Consensus 72 ~----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~ 120 (217)
T PRK09483 72 Y----TPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHS 120 (217)
T ss_pred H----CCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 4 246899999999999999999999999999999999999999988754
No 97
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.28 E-value=7.1e-11 Score=125.20 Aligned_cols=117 Identities=16% Similarity=0.284 Sum_probs=103.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhc-CCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKL-GAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~-G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+|||+||++..+..+...|+.. ++.+. .+.++.++++.+. ...||+|++|+.||+++|.++++.+|
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~dlvild~~l~~~~g~~~~~~l~ 72 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLR-----------TRPVDLIIMDIDLPGTDGFTFLKRIK 72 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 57999999999999999999876 57765 6889999988774 24799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
... +.+|||++|+........+++++|+++|+.||++.++|..+++.++.
T Consensus 73 ~~~----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~ 122 (210)
T PRK09935 73 QIQ----STVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILS 122 (210)
T ss_pred HhC----CCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHc
Confidence 642 35899999999999999999999999999999999999999987654
No 98
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.28 E-value=6.6e-11 Score=124.42 Aligned_cols=113 Identities=21% Similarity=0.308 Sum_probs=100.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhc-CCe-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKL-GAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~-G~~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
+||+|||++..+..+...|+.. |+. +..+.++.++++.+. ...||+|++|+.||+++|+++++.++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~dlvi~d~~~~~~~g~~~~~~l~~ 71 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP-----------GRGVQVCICDISMPDISGLELLSQLPK 71 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHcc
Confidence 7999999999999999999754 565 568899999998873 347999999999999999999999863
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
.+|||++|+....+....++++|+++|+.||++.++|..+++.+.+
T Consensus 72 -------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 72 -------GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred -------CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 3689999999999999999999999999999999999999988764
No 99
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.27 E-value=5.4e-11 Score=129.76 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=97.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCC-e-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGA-K-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~-~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+|||+||++..+..+..+|+..|. . +..+.++.++++.+.+ ..||++|+|+.||+++|+++++.++
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~dlv~lDi~~~~~~G~~~~~~l~ 70 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR-----------LKPDVVFLDIQMPRISGLELVGMLD 70 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh-----------cCCCEEEEeCCCCCCCHHHHHHHhc
Confidence 4799999999999999999998873 3 4568999999988742 3699999999999999999999986
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.. ...+||++|++. +...++++.|+.+||.||++.++|..++.++.+.
T Consensus 71 ~~-----~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 71 PE-----HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred cc-----CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 32 234688888764 4667899999999999999999999999988654
No 100
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.26 E-value=2.4e-11 Score=142.98 Aligned_cols=113 Identities=19% Similarity=0.357 Sum_probs=85.5
Q ss_pred EEccHHHHHHHHHHHHHhHhhccCC-C---eEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccc
Q 001330 507 VRGDRVKLKQILCNLVSNSMKFTSE-G---HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVE 582 (1099)
Q Consensus 507 v~gD~~rL~QIL~NLL~NAiKfT~~-G---~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (1099)
+.+|...|.|++.||++||++|+.. | .|.+.+....
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g---------------------------------------- 61 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIG---------------------------------------- 61 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECC----------------------------------------
Confidence 4568899999999999999999875 3 3554432110
Q ss_pred cCCCceeEEEEEEeCCCCCCcccHhhhccccccccccC-C-CCCCCccccHHHHHHHHHhcCCE-EEEEecCCCc-eeEE
Q 001330 583 RNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETA-L-GHQEGLGLGLGIVQSMVHLMKGE-IAIADKEPGE-RGVC 658 (1099)
Q Consensus 583 ~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~-~-~~~~GtGLGLaIvk~lVe~~gG~-I~v~s~~~gg-~Gt~ 658 (1099)
...+.|+|.|+|+||++++++++|++|+++++.+ . ...+|.|+||++|+.++++|+|. ++|.++.+|. .|..
T Consensus 62 ----~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~ 137 (488)
T TIGR01052 62 ----KDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYK 137 (488)
T ss_pred ----CceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEE
Confidence 0146799999999999999999999998887643 2 23468999999999999999999 9998876432 2334
Q ss_pred EEEEE
Q 001330 659 FRFNV 663 (1099)
Q Consensus 659 f~~~l 663 (1099)
+.|.+
T Consensus 138 ~~~~i 142 (488)
T TIGR01052 138 MKLKI 142 (488)
T ss_pred EEEEe
Confidence 44443
No 101
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.26 E-value=1.2e-10 Score=126.49 Aligned_cols=117 Identities=25% Similarity=0.301 Sum_probs=105.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||++||++..+..+...|+..|+.+..+.++.+|+..+. ...||+|++|+.||+++|+++++.||..
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvl~d~~~~~~~g~~~~~~l~~~ 79 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVR-----------QTPPDLILLDLMLPGTDGLTLCREIRRF 79 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-----------hCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 48999999999999999999999999999999999998874 2469999999999999999999999952
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
..+|+|++++.........++++|+++|+.||++.++|..+++.+++.
T Consensus 80 -----~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~ 127 (240)
T PRK10710 80 -----SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred -----CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhh
Confidence 258999999999888889999999999999999999999999887653
No 102
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.26 E-value=5.4e-11 Score=137.30 Aligned_cols=115 Identities=29% Similarity=0.384 Sum_probs=97.3
Q ss_pred EEEEEeCCHHHHHHHHHHH-hhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 964 KFLVVEDDAIVLKVTSAVL-GKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L-~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
+||||||++..+..+..+| +..|+.+. .+.++.+|++.+. ...||+|++|+.||+|+|++++++|+.
T Consensus 2 ~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~-----------~~~pDlVllD~~mp~~~G~e~l~~l~~ 70 (337)
T PRK12555 2 RIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCA-----------AQPPDVILMDLEMPRMDGVEATRRIMA 70 (337)
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-----------ccCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 7999999999999999999 46678876 7899999999884 247999999999999999999999986
Q ss_pred cccccCCCccEEEEeccCC--HHHHHHHHHcCCCEEEeCCC---------CHHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAM--AGVASKIVDAGMDFHLTKPL---------QKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~ddyL~KPi---------~~~~L~~~l~~i~~ 1094 (1099)
. ..+|+|++++... .+...+++++|+++|+.||+ ..++|.+.|+.+..
T Consensus 71 ~-----~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 71 E-----RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred H-----CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 3 2379999998754 56677899999999999999 56677777776654
No 103
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.26 E-value=5.2e-11 Score=143.44 Aligned_cols=115 Identities=23% Similarity=0.315 Sum_probs=105.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcccc
Q 001330 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEE 1044 (1099)
Q Consensus 965 ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~ 1044 (1099)
||||||++..+..+...|+..|+.+..+.++.+|+..+. ...||+|++|+.||+++|+++++.+|+.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~DlVllD~~~p~~~g~~ll~~l~~~-- 67 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALA-----------RGQPDLLITDVRMPGEDGLDLLPQIKKR-- 67 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-----------cCCCCEEEEcCCCCCCCHHHHHHHHHHh--
Confidence 689999999999999999999999999999999998874 2479999999999999999999999964
Q ss_pred ccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1045 ~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
.+.+|||++|+........+++++|+++|+.||++.++|...++++++
T Consensus 68 --~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 115 (463)
T TIGR01818 68 --HPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALA 115 (463)
T ss_pred --CCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHH
Confidence 246899999999999999999999999999999999999999988765
No 104
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.24 E-value=3e-11 Score=105.42 Aligned_cols=66 Identities=35% Similarity=0.530 Sum_probs=58.5
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001330 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDL-AENLGLIRTCSKDLLGILNSVMEMSKIEAG 459 (1099)
Q Consensus 394 k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~-~~~l~~I~~~~~~L~~LIndlLdlskie~g 459 (1099)
|.+|++.+||||||||++|.++++++......+++. +++++.|..+++++..+++++++++|+|+|
T Consensus 2 ~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 2 KGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 678999999999999999999999998833333444 899999999999999999999999999987
No 105
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.23 E-value=1.9e-10 Score=122.95 Aligned_cols=117 Identities=23% Similarity=0.325 Sum_probs=105.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
+||++||++.....+...|+..|+.+..+.++.++++.+. ...||+|++|+.||+++|+++++.+|+..
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------~~~~d~vild~~~~~~~~~~~~~~i~~~~ 70 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQ-----------SEMYALAVLDINMPGMDGLEVLQRLRKRG 70 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-----------hCCCCEEEEeCCCCCCcHHHHHHHHHhcC
Confidence 6999999999999999999999999999999999987763 24699999999999999999999998642
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.++|+|++|+....+...+++++|+++|+.||++.++|...++.+++.
T Consensus 71 ----~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 118 (221)
T PRK15479 71 ----QTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118 (221)
T ss_pred ----CCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhh
Confidence 358999999999999999999999999999999999999999887653
No 106
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.22 E-value=1.4e-10 Score=121.38 Aligned_cols=118 Identities=19% Similarity=0.362 Sum_probs=106.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||++||++..+..+...|+..|+.+..+.++.++++.+. ...||+|++|+.||.++|+++++.+|+.
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------~~~~d~ii~d~~~~~~~~~~~~~~l~~~ 72 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALP-----------GLRFGCVVTDVRMPGIDGIELLRRLKAR 72 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhc-----------cCCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 57999999999999999999999999999999999988773 3469999999999999999999999864
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.+.+|+|++|+....+....++++|+++|+.||++..++...+....+.
T Consensus 73 ----~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 73 ----GSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred ----CCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 2468999999999999999999999999999999999999988876654
No 107
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.20 E-value=1.7e-10 Score=124.27 Aligned_cols=113 Identities=9% Similarity=0.106 Sum_probs=92.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCe-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHH-HHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEAT-RLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~-r~I 1039 (1099)
..++++|||+|.....++.+|+. ++. +..+.++.+|++.+ .+||+||+|+.||+++|++++ +.|
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~-------------~~~DvvllDi~~p~~~G~~~~~~~i 75 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDI-------------SSGSIILLDMMEADKKLIHYWQDTL 75 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccC-------------CCCCEEEEECCCCCccHHHHHHHHH
Confidence 35799999999999999999984 554 55778999998764 148999999999999999997 567
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVD--AGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~--aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
|.. .+.++||++|+..+. ...++. +|+++|+.|+.+.++|.++|+.+.+
T Consensus 76 ~~~----~p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~ 126 (216)
T PRK10100 76 SRK----NNNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred HHh----CCCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHc
Confidence 754 346899999998763 334454 5999999999999999999987753
No 108
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.19 E-value=2.5e-10 Score=132.73 Aligned_cols=114 Identities=27% Similarity=0.418 Sum_probs=95.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhc-CCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKL-GAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~-G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+||||||++.++..+..+|+.. |+.+. .+.++.+|++.+.+ ..||+|++|+.||+|+|++++++||
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~-----------~~~DlVllD~~mp~~dgle~l~~i~ 72 (354)
T PRK00742 4 IRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK-----------LNPDVITLDVEMPVMDGLDALEKIM 72 (354)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh-----------hCCCEEEEeCCCCCCChHHHHHHHH
Confidence 58999999999999999999876 78876 89999999988742 4699999999999999999999999
Q ss_pred ccccccCCCccEEEEeccC--CHHHHHHHHHcCCCEEEeCCCCH---------HHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHA--MAGVASKIVDAGMDFHLTKPLQK---------DKLLDVVKSI 1092 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~--~~~~~~~~l~aG~ddyL~KPi~~---------~~L~~~l~~i 1092 (1099)
+.. . +|+|++|+.. ..+...+++++|+++|+.||++. .+|..+++.+
T Consensus 73 ~~~----~-~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~ 130 (354)
T PRK00742 73 RLR----P-TPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAA 130 (354)
T ss_pred HhC----C-CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHH
Confidence 642 2 8999999754 34667789999999999999953 4555555554
No 109
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.18 E-value=3.5e-10 Score=135.07 Aligned_cols=118 Identities=30% Similarity=0.381 Sum_probs=107.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
+||+|||++..+..+...|...|+.+..+.++.++++.+.+ ..||+|++|+.||+++|+++++.||+..
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------~~~dlvi~d~~~~~~~g~~l~~~i~~~~ 72 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER-----------EQPDIILLDVMMPGMDGFEVCRRLKSDP 72 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh-----------cCCCEEEEeCCCCCCCHHHHHHHHHcCc
Confidence 79999999999999999999889999999999999988842 4699999999999999999999999643
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
. .+.+|||++|+..+.....+++++|+++|+.||++.++|..+++++.+
T Consensus 73 ~--~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 121 (457)
T PRK09581 73 A--TTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTR 121 (457)
T ss_pred c--cCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 2 236899999999999999999999999999999999999999988765
No 110
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.16 E-value=1.2e-09 Score=104.18 Aligned_cols=121 Identities=26% Similarity=0.415 Sum_probs=105.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCe-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
.+||++|+++.....+...|+..|+. +..+.++.++++.+. ...||++++|..+|.++|+++++.+++
T Consensus 6 ~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~di~l~d~~~~~~~~~~~~~~l~~ 74 (129)
T PRK10610 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-----------AGGFGFVISDWNMPNMDGLELLKTIRA 74 (129)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhh-----------ccCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 58999999999999999999988985 778899999988763 246999999999999999999999987
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
... ...+|+++++.........++++.|+++|+.||++.+++...++++.++.
T Consensus 75 ~~~--~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~~ 127 (129)
T PRK10610 75 DGA--MSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 127 (129)
T ss_pred CCC--cCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHHc
Confidence 432 23579999998888888899999999999999999999999999887654
No 111
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.14 E-value=3.7e-10 Score=120.89 Aligned_cols=105 Identities=8% Similarity=0.003 Sum_probs=86.9
Q ss_pred HHHHHHHHhh---cCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEE---EecCCCCCCHHHHHHHHhccccccCC
Q 001330 975 LKVTSAVLGK---LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM---MDCEMPVMNGWEATRLIRKEEEQYDV 1048 (1099)
Q Consensus 975 ~~~l~~~L~~---~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIl---mDi~MP~mdG~e~~r~IR~~~~~~~~ 1048 (1099)
+..+..+|+. .|+.+..+.++.++++.+. ..+||++| +|+.||++||++++++||+. .+
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~-----------~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~----~p 67 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMS-----------RISFSAVIFSLSAMRSERREGLSCLTELAIK----FP 67 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhc-----------cCCCCEEEeeccccCCCCCCHHHHHHHHHHH----CC
Confidence 5667778854 4566778999999998873 34689998 78899999999999999864 34
Q ss_pred CccEEEEeccCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1049 HIPIIALTAHAMAGVASKIV-DAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1049 ~ipIIalTa~~~~~~~~~~l-~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
.+|||++|++.......+++ ++|+++|+.||.+.++|.++|+.+++
T Consensus 68 ~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~ 114 (207)
T PRK11475 68 RMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLN 114 (207)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHC
Confidence 68999999987776565655 79999999999999999999998754
No 112
>PRK13435 response regulator; Provisional
Probab=99.14 E-value=7.1e-10 Score=111.35 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=98.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC-CCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP-VMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP-~mdG~e~~r~I 1039 (1099)
..+|||+|+++.....+...|+..|+.+. .+.++.++++.+.+ ..||+|++|+.|+ +++|.++.+.+
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~dliivd~~~~~~~~~~~~~~~l 73 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR-----------RQPDVALVDVHLADGPTGVEVARRL 73 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh-----------cCCCEEEEeeecCCCCcHHHHHHHH
Confidence 46899999999999999999998899876 78999999887732 3699999999998 59999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
++. ..+|+|++++... ...++.+|+++|+.||++.++|.+.|+++....
T Consensus 74 ~~~-----~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (145)
T PRK13435 74 SAD-----GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARR 122 (145)
T ss_pred HhC-----CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcC
Confidence 753 2589999987543 356788999999999999999999998886543
No 113
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.13 E-value=4.3e-10 Score=103.96 Aligned_cols=100 Identities=35% Similarity=0.602 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhHhhccC--CCeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEE
Q 001330 514 LKQILCNLVSNSMKFTS--EGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFE 591 (1099)
Q Consensus 514 L~QIL~NLL~NAiKfT~--~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 591 (1099)
|.+++.+|++||++|.. .+.|.+.+.... ..+.
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~---------------------------------------------~~~~ 35 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDG---------------------------------------------DHLE 35 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEecC---------------------------------------------CEEE
Confidence 46899999999999987 456666553221 1578
Q ss_pred EEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEE
Q 001330 592 FEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662 (1099)
Q Consensus 592 i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~ 662 (1099)
|.|.|+|.|+++..+++.|.+|..... ....++.|+||++|+++++.|||++++.+... .|++|++.
T Consensus 36 v~i~d~g~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~--~g~~~~~~ 102 (103)
T cd00075 36 IRVEDNGPGIPEEDLERIFERFSDGSR--SRKGGGTGLGLSIVKKLVELHGGRIEVESEPG--GGTTFTIT 102 (103)
T ss_pred EEEEeCCCCCCHHHHHHHhhhhhcCCC--CCCCCccccCHHHHHHHHHHcCCEEEEEeCCC--CcEEEEEE
Confidence 999999999999999999998821111 12235899999999999999999999976542 47777764
No 114
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.12 E-value=2.4e-10 Score=138.20 Aligned_cols=111 Identities=18% Similarity=0.287 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhHhhccCCC----eEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCC
Q 001330 511 RVKLKQILCNLVSNSMKFTSEG----HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPN 586 (1099)
Q Consensus 511 ~~rL~QIL~NLL~NAiKfT~~G----~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (1099)
...|.+++.||++||++|+..+ .|.|.+....
T Consensus 34 ~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g-------------------------------------------- 69 (659)
T PRK14867 34 LRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLG-------------------------------------------- 69 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECC--------------------------------------------
Confidence 3345599999999999998753 4555442211
Q ss_pred ceeEEEEEEeCCCCCCcccHhhhccccccccccCC--CCCCCccccHHHHHHHHHhc-CCEEEEEecCCCceeEEEEEEE
Q 001330 587 LLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL--GHQEGLGLGLGIVQSMVHLM-KGEIAIADKEPGERGVCFRFNV 663 (1099)
Q Consensus 587 ~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~--~~~~GtGLGLaIvk~lVe~~-gG~I~v~s~~~gg~Gt~f~~~l 663 (1099)
...+.|.|.|+|+|||+++++++|++|+.+++-.+ ...++.|+||+++..+++.+ ||.+.+.+..+ .|++|++.+
T Consensus 70 ~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g--~G~~f~i~L 147 (659)
T PRK14867 70 SDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTG--DGKIHEMEI 147 (659)
T ss_pred CcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcC--CCEEEEEEE
Confidence 11478999999999999999999999987654211 23368999999999999886 56688887763 467777777
Q ss_pred eccc
Q 001330 664 LLTA 667 (1099)
Q Consensus 664 ~l~~ 667 (1099)
++..
T Consensus 148 ~i~i 151 (659)
T PRK14867 148 KMSV 151 (659)
T ss_pred EEEe
Confidence 7643
No 115
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.12 E-value=5.4e-10 Score=125.70 Aligned_cols=103 Identities=36% Similarity=0.481 Sum_probs=90.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLG--AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G--~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.|||||||....|++++.+|...| ..|-++.||.+|++++.+ ..||+|.||+.||.|||++++++|-
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~-----------~~PDVi~ld~emp~mdgl~~l~~im 70 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK-----------LKPDVITLDVEMPVMDGLEALRKIM 70 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh-----------cCCCEEEEecccccccHHHHHHHHh
Confidence 489999999999999999999998 456789999999999964 4799999999999999999999997
Q ss_pred ccccccCCCccEEEEeccC--CHHHHHHHHHcCCCEEEeCCCC
Q 001330 1041 KEEEQYDVHIPIIALTAHA--MAGVASKIVDAGMDFHLTKPLQ 1081 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~--~~~~~~~~l~aG~ddyL~KPi~ 1081 (1099)
+. ..+|||++++-. ..+...+|++.|+-||+.||..
T Consensus 71 ~~-----~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 71 RL-----RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred cC-----CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 64 358999987643 3577788999999999999974
No 116
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.10 E-value=1.9e-09 Score=113.42 Aligned_cols=118 Identities=23% Similarity=0.328 Sum_probs=102.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcC-CeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLG-AKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G-~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
..+||++||++..+..+...|...+ +.+ ..+.++.++++.+. ...||+|++|+.||.++|+++++.+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~dlvl~d~~~~~~~~~~~~~~l 71 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACR-----------QLEPDIVILDLGLPGMNGLDVIPQL 71 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3589999999999999999998764 554 47899999988763 2469999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
|+.. +.+|+|++|+.........++++|+++|+.||++..+|...+..+..
T Consensus 72 ~~~~----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 72 HQRW----PAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred HHHC----CCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 8642 35799999999999999999999999999999999999999987643
No 117
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.09 E-value=6.7e-10 Score=139.94 Aligned_cols=116 Identities=19% Similarity=0.156 Sum_probs=101.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||+|||++.++..+..+|...|+.+..+.++.+|++.+. ...||+||+|+.||+++|++++++||..
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~-----------~~~~Dlvl~d~~lp~~~g~~~l~~l~~~ 76 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVE-----------AGEIDCVVADHEPDGFDGLALLEAVRQT 76 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhh-----------ccCCCEEEEeccCCCCcHHHHHHHHHhc
Confidence 48999999999999999999999999999999999998874 2469999999999999999999999864
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHH--HHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD--KLLDVVKSID 1093 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~--~L~~~l~~i~ 1093 (1099)
.+.+|||++|+..+.+...+++++|+++|+.||.... .+..+++..+
T Consensus 77 ----~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~ 125 (665)
T PRK13558 77 ----TAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAV 125 (665)
T ss_pred ----CCCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhh
Confidence 3468999999999999999999999999999997643 5556665544
No 118
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.09 E-value=7.7e-10 Score=110.51 Aligned_cols=96 Identities=19% Similarity=0.372 Sum_probs=73.3
Q ss_pred cHHHHHHHHHHHHHhHhhccC----CCeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCC
Q 001330 510 DRVKLKQILCNLVSNSMKFTS----EGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNP 585 (1099)
Q Consensus 510 D~~rL~QIL~NLL~NAiKfT~----~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (1099)
|...+.+++.|+++||++|+. .|.|.+.+.....
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~------------------------------------------ 73 (137)
T TIGR01925 36 ELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDH------------------------------------------ 73 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCC------------------------------------------
Confidence 667899999999999999862 3456666543221
Q ss_pred CceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEE
Q 001330 586 NLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662 (1099)
Q Consensus 586 ~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~ 662 (1099)
.+.++|.|+|+||+ ..+++|++|+..+.. .+|.|+||++++++ .+++++.+.. +.|++|++.
T Consensus 74 ---~~~i~I~D~G~gi~--~~~~~~~~~~~~~~~----~~~~GlGL~lv~~~----~~~l~~~~~~--~~Gt~v~i~ 135 (137)
T TIGR01925 74 ---EVYITVRDEGIGIE--NLEEAREPLYTSKPE----LERSGMGFTVMENF----MDDVSVDSEK--EKGTKIIMK 135 (137)
T ss_pred ---EEEEEEEEcCCCcC--chhHhhCCCcccCCC----CCCCcccHHHHHHh----CCcEEEEECC--CCCeEEEEE
Confidence 57899999999998 477899999976432 25899999998874 4689997654 368888875
No 119
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.08 E-value=2.6e-09 Score=113.52 Aligned_cols=117 Identities=19% Similarity=0.314 Sum_probs=102.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhc-CCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKL-GAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~-G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+||+|||++..+..+...|... ++.+ ..+.++.+++..+. ...||+|++|+.||+++|+++++.++
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~dlvl~d~~l~~~~~~~~~~~l~ 75 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-----------SLDPDLILLDLNMPGMNGLETLDKLR 75 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHH-----------hCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 58999999999999999999765 4554 46899999998874 24699999999999999999999998
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
+.. +.+|+|++++....+....++++|+++|+.||++.++|...++.++.
T Consensus 76 ~~~----~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~ 125 (216)
T PRK10651 76 EKS----LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAA 125 (216)
T ss_pred HhC----CCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 642 35799999999999999999999999999999999999999988753
No 120
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.08 E-value=2.3e-09 Score=113.63 Aligned_cols=116 Identities=25% Similarity=0.342 Sum_probs=101.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhh-cCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGK-LGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~-~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+||++||++..+..+...|.. .++.+. .+.++.++++.+. ...||+|++|+.||.++|+++++.++
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~dlvi~d~~~~~~~~~~~~~~l~ 75 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLAN-----------RLDPDVILLDLNMKGMSGLDTLNALR 75 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-----------hcCCCEEEEecCCCCCcHHHHHHHHH
Confidence 4799999999999999999975 467765 6899999998774 24699999999999999999999998
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~ 1093 (1099)
+.. +.+|+++++..........+++.|+++|+.||++.++|..+++.+.
T Consensus 76 ~~~----~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~ 124 (215)
T PRK10403 76 RDG----VTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGA 124 (215)
T ss_pred HhC----CCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHh
Confidence 642 3578999999988888999999999999999999999999998753
No 121
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.04 E-value=2.3e-09 Score=115.03 Aligned_cols=115 Identities=10% Similarity=0.043 Sum_probs=94.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCC---eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC--CCCCCHHHHHHH
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGA---KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE--MPVMNGWEATRL 1038 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~---~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~--MP~mdG~e~~r~ 1038 (1099)
.||||||++..+..++.+|+..++ .+..+.++.++++.+. ...||+||||+. ||.++|.+++++
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~-----------~~~pDlvLlDl~~~l~~~~g~~~i~~ 70 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD-----------SLRPSVVFINEDCFIHDASNSQRIKQ 70 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh-----------ccCCCEEEEeCcccCCCCChHHHHHH
Confidence 489999999999999999987653 3457899999998773 236899999976 898999999999
Q ss_pred HhccccccCCCccEEEEeccCCHHHHHHHHHcCCCE-EEeCCCCHHHHHHHHHHHHH
Q 001330 1039 IRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDF-HLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1039 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~dd-yL~KPi~~~~L~~~l~~i~~ 1094 (1099)
|++.. +.++||++|++.+..... ++..|... |+.|+.++++|.++|+.+..
T Consensus 71 i~~~~----p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~ 122 (207)
T PRK15411 71 IINQH----PNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILK 122 (207)
T ss_pred HHHHC----CCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHc
Confidence 98643 458999999987766543 55556655 88999999999999988753
No 122
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.02 E-value=1.9e-07 Score=102.68 Aligned_cols=183 Identities=16% Similarity=0.259 Sum_probs=135.2
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHHHHHHHHH
Q 001330 402 SHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMY 481 (1099)
Q Consensus 402 SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll~~v~~~~ 481 (1099)
-.|+-+-+|+|...+.+.++ ..+++..+...+.|+.-+.++-.-+.++|.--| .-...+.-+.+.+..+++.+
T Consensus 311 HDeIGQnITAIr~Qa~ivkR-~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLR------P~~LDdL~l~qai~~l~~Em 383 (497)
T COG3851 311 HDEIGQNITAIRTQAGIVKR-AADNAQVKQAASLIEQLSLRIYDSVRQLLGRLR------PRQLDDLTLEQAIRSLLREM 383 (497)
T ss_pred HHHhcchHHHHHHHHHHHHh-ccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcC------CcccccccHHHHHHHHHHHh
Confidence 36899999999999988876 445566677778888888887777777765333 22235677888999998877
Q ss_pred HHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhccccchhhcc
Q 001330 482 YHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCL 561 (1099)
Q Consensus 482 ~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1099)
. ..++|+...++-.......+.. -+.-+.++..-++.|-+||.+...|.+..+...+
T Consensus 384 ~--~~ergihcq~~~~~n~~~ldet---~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e------------------ 440 (497)
T COG3851 384 E--LEERGIHCQLDWRINETALDET---QRVTLYRLCQELLNNICKHADASAVTIQLWQQDE------------------ 440 (497)
T ss_pred h--hhhcCeEEEeccccCcccCCcc---eeEeHHHHHHHHHHHHHhccccceEEEEEeeCCc------------------
Confidence 5 4678888776643221111111 1235788999999999999999888887764332
Q ss_pred chhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhc
Q 001330 562 SKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLM 641 (1099)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~ 641 (1099)
.+.++|+|+|.|+|+.. +-.|.||.=.++=|.+.
T Consensus 441 ---------------------------~l~Lei~DdG~Gl~~~~-------------------~v~G~Gl~GmrERVsaL 474 (497)
T COG3851 441 ---------------------------RLMLEIEDDGSGLPPGS-------------------GVQGFGLTGMRERVSAL 474 (497)
T ss_pred ---------------------------EEEEEEecCCcCCCCCC-------------------CccCcCcchHHHHHHHh
Confidence 57899999999999632 24588889999999999
Q ss_pred CCEEEEEecCCCceeEEEEEEEe
Q 001330 642 KGEIAIADKEPGERGVCFRFNVL 664 (1099)
Q Consensus 642 gG~I~v~s~~~gg~Gt~f~~~l~ 664 (1099)
||++++++. .||...+++|
T Consensus 475 GG~ltlssq----~GTrviVnLP 493 (497)
T COG3851 475 GGTLTLSSQ----HGTRVIVNLP 493 (497)
T ss_pred CCceEEEec----cCcEEEEecc
Confidence 999999663 5888888876
No 123
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.00 E-value=2.7e-09 Score=109.23 Aligned_cols=113 Identities=28% Similarity=0.360 Sum_probs=94.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
.++|++||++..+..+...|...||.+ -.+.++.++.+.+. ..+||+||||+.||..|-.+.....-+
T Consensus 6 lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~-----------~~~pDvVildie~p~rd~~e~~~~~~~ 74 (194)
T COG3707 6 LRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE-----------RLQPDVVILDIEMPRRDIIEALLLASE 74 (194)
T ss_pred cceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH-----------hcCCCEEEEecCCCCccHHHHHHHhhc
Confidence 589999999999999999999999975 56789999888774 358999999999999994343333221
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKS 1091 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~ 1091 (1099)
+...|||++|++.+++.++.+.++|+.+||.||++...|+..+.-
T Consensus 75 -----~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~v 119 (194)
T COG3707 75 -----NVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDV 119 (194)
T ss_pred -----CCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHH
Confidence 234699999999999999999999999999999999998877743
No 124
>PRK09191 two-component response regulator; Provisional
Probab=99.00 E-value=5.3e-09 Score=115.79 Aligned_cols=116 Identities=22% Similarity=0.264 Sum_probs=98.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-CCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-MNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-mdG~e~~r~IR 1040 (1099)
.+||++||++..+..+...|+..|+.+. .+.++.++++.+. ...||+|++|+.||+ ++|+++++.++
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~-----------~~~~dlvi~d~~~~~~~~g~e~l~~l~ 206 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAK-----------KTRPGLILADIQLADGSSGIDAVNDIL 206 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHh-----------ccCCCEEEEecCCCCCCCHHHHHHHHH
Confidence 5799999999999999999998899887 7899999998874 246999999999995 89999999998
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
+. . ++|||++|+....... +...|+.+|+.||++.++|...|+++....
T Consensus 207 ~~----~-~~pii~ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 255 (261)
T PRK09191 207 KT----F-DVPVIFITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALFFQ 255 (261)
T ss_pred Hh----C-CCCEEEEeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHhcc
Confidence 64 2 5899999997765443 344678899999999999999999876543
No 125
>PRK03660 anti-sigma F factor; Provisional
Probab=98.98 E-value=4e-09 Score=106.51 Aligned_cols=101 Identities=21% Similarity=0.414 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHHHHhHhhccCC----CeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCC
Q 001330 510 DRVKLKQILCNLVSNSMKFTSE----GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNP 585 (1099)
Q Consensus 510 D~~rL~QIL~NLL~NAiKfT~~----G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (1099)
|...+.+++.|++.||++|+.. +.|.+++....
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~------------------------------------------- 72 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEE------------------------------------------- 72 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECC-------------------------------------------
Confidence 6678999999999999998632 45666543211
Q ss_pred CceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 586 NLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 586 ~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
..+.++|.|+|.||++ ..++|++|++.+.. .++.|+||+|+++ +.+++++++.. +.|++|++..++
T Consensus 73 --~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~----~~~~GlGL~i~~~----~~~~i~~~~~~--~~Gt~~~i~~~~ 138 (146)
T PRK03660 73 --EELEITVRDEGKGIED--IEEAMQPLYTTKPE----LERSGMGFTVMES----FMDEVEVESEP--GKGTTVRMKKYL 138 (146)
T ss_pred --CEEEEEEEEccCCCCh--HHHhhCCCcccCCC----CCCccccHHHHHH----hCCeEEEEecC--CCcEEEEEEEEe
Confidence 1578999999999986 66899999975432 2478999999885 45689997654 358999998877
Q ss_pred cc
Q 001330 666 TA 667 (1099)
Q Consensus 666 ~~ 667 (1099)
..
T Consensus 139 ~~ 140 (146)
T PRK03660 139 KK 140 (146)
T ss_pred cc
Confidence 54
No 126
>PRK10693 response regulator of RpoS; Provisional
Probab=98.93 E-value=6e-09 Score=118.48 Aligned_cols=88 Identities=25% Similarity=0.383 Sum_probs=77.7
Q ss_pred EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHc
Q 001330 991 VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDA 1070 (1099)
Q Consensus 991 ~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~a 1070 (1099)
.+.++.+|++.+. ...||+|++|+.||+|+|+++++++|+.. ..+|||++|+....+...+++++
T Consensus 2 ~a~~g~~al~~l~-----------~~~pDlVL~D~~mp~~~Gle~~~~ir~~~----~~ipiI~lt~~~~~~~~~~al~~ 66 (303)
T PRK10693 2 LAANGVDALELLG-----------GFTPDLIICDLAMPRMNGIEFVEHLRNRG----DQTPVLVISATENMADIAKALRL 66 (303)
T ss_pred EeCCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CCCcEEEEECCCCHHHHHHHHHC
Confidence 4789999998874 24699999999999999999999999742 35899999999999999999999
Q ss_pred CCCEEEeCCC-CHHHHHHHHHHHH
Q 001330 1071 GMDFHLTKPL-QKDKLLDVVKSID 1093 (1099)
Q Consensus 1071 G~ddyL~KPi-~~~~L~~~l~~i~ 1093 (1099)
|++||+.||+ +.++|.+++.+.+
T Consensus 67 Ga~dyl~KP~~~~~~L~~~i~~~l 90 (303)
T PRK10693 67 GVQDVLLKPVKDLNRLREMVFACL 90 (303)
T ss_pred CCcEEEECCCCcHHHHHHHHHHHh
Confidence 9999999999 5899998887654
No 127
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.86 E-value=1.7e-06 Score=94.33 Aligned_cols=212 Identities=17% Similarity=0.257 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhHHH-hHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001330 375 AALIKQMNATEQAERKSMNKTFALAKASHD-VRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEM 453 (1099)
Q Consensus 375 ~~l~~~~~a~~~ae~~~~~k~~fla~~SHE-LRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdl 453 (1099)
.++.++.-..++.|++..++.. || |.+-|-+..-.+|++....+++.. .....|.+.+.+|..-|+++..+
T Consensus 237 keL~qrvv~tQedEr~rlaREL------HDGIsQ~LVs~k~~lela~~ql~~p~~--~a~~aieKaa~aL~~Ai~EVRRi 308 (459)
T COG4564 237 KELAQRVVDTQEDERARLAREL------HDGISQNLVSVKCALELAARQLNPPKG--GAHPAIEKAADALNGAIKEVRRI 308 (459)
T ss_pred HHHHHHHhhchhHHHHHHHHHH------hhhHHHHHHHHHHHHHHHhccCCCCCC--CCchhhhhHHHHHHHHHHHHHHh
Confidence 3444444444555555544432 44 566777888888988776655432 12255788889999999988887
Q ss_pred HHhhcCCCcceEEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCe
Q 001330 454 SKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGH 533 (1099)
Q Consensus 454 skie~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~ 533 (1099)
|--- -.-.....-|..-++.+++.|+ .+.|+++.+....... .....-...|.+|..--++|-=||+..-.
T Consensus 309 SH~L---RP~~LDDLGL~aALe~L~~~f~---~~tg~~itle~~~~p~---~l~~e~~talyRv~QEaltNIErHa~Atr 379 (459)
T COG4564 309 SHDL---RPRALDDLGLTAALEALLEDFK---ERTGIEITLEFDTQPG---KLKPEVATALYRVVQEALTNIERHAGATR 379 (459)
T ss_pred cccc---ChhhhhhhhHHHHHHHHHHHhh---hccCeEEEEEecCCcc---cCCcHHHHHHHHHHHHHHHHHHhhcCCeE
Confidence 7511 1111233445666677776665 4677777665322111 11223456789999999999999986666
Q ss_pred EEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhcccc
Q 001330 534 ISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613 (1099)
Q Consensus 534 I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F 613 (1099)
|.+...... ..+++.|.|+|+|.+-+...
T Consensus 380 v~ill~~~~---------------------------------------------d~vql~vrDnG~GF~~~~~~------ 408 (459)
T COG4564 380 VTILLQQMG---------------------------------------------DMVQLMVRDNGVGFSVKEAL------ 408 (459)
T ss_pred EEEEeccCC---------------------------------------------cceEEEEecCCCCccchhhc------
Confidence 666542111 15789999999999865432
Q ss_pred ccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 614 VQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 614 ~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
..-.||||-=.|+=+...||+..|+|++ .||..+.-+|+..
T Consensus 409 ----------~~~~GiGLRNMrERma~~GG~~~v~s~p---~GTel~v~Lp~~~ 449 (459)
T COG4564 409 ----------QKRHGIGLRNMRERMAHFGGELEVESSP---QGTELTVLLPLDA 449 (459)
T ss_pred ----------cCccccccccHHHHHHHhCceEEEEecC---CCcEEEEEecchh
Confidence 1236999999999999999999998765 4888888888754
No 128
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=98.86 E-value=2.9e-08 Score=90.55 Aligned_cols=112 Identities=36% Similarity=0.520 Sum_probs=98.4
Q ss_pred EEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccc
Q 001330 966 LVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQ 1045 (1099)
Q Consensus 966 LvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~ 1045 (1099)
|++|+++..+..+...+...|+.+..+.++.++++.+.+ ..||++++|..++..+|++.++.+++.
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ii~~~~~~~~~~~~~~~~l~~~--- 66 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE-----------EKPDLILLDIMMPGMDGLELLRRIRKR--- 66 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh-----------CCCCEEEEecCCCCCchHHHHHHHHHh---
Confidence 478999999999999999889999999999999887742 479999999999999999999999875
Q ss_pred cCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 001330 1046 YDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1046 ~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i 1092 (1099)
...+|+++++.........++++.|+++|+.||++.++|...+..+
T Consensus 67 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 67 -GPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred -CCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 2357999999887778888899999999999999999999888653
No 129
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.85 E-value=5.7e-08 Score=120.33 Aligned_cols=143 Identities=26% Similarity=0.433 Sum_probs=102.4
Q ss_pred cHHHHHHHHHHHHHHhHH--hcCCEEEEccCCCCCcccceEEccHHHHHHH---HHHHHHhHhhcc-------------C
Q 001330 469 NLAQLLEEVVDMYYHVGI--KKGVDVVLDPCDGSVLGSCHVRGDRVKLKQI---LCNLVSNSMKFT-------------S 530 (1099)
Q Consensus 469 dL~~ll~~v~~~~~~~a~--~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QI---L~NLL~NAiKfT-------------~ 530 (1099)
.+..++...-.+.+..+. .|.|++.+.-.+ ...|+.-|.++ |..||.||+.|. +
T Consensus 391 P~~~vf~RfpR~VRdla~~lgK~V~L~ieG~~--------telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~ 462 (716)
T COG0643 391 PFEQVFSRFPRMVRDLARKLGKQVELVIEGED--------TELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPE 462 (716)
T ss_pred eHHHHHhhccHHHHHHHHHhCCeeEEEEecCC--------eeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCC
Confidence 344444444444444443 466777776432 45588888887 899999999995 2
Q ss_pred CCeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccH----
Q 001330 531 EGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQ---- 606 (1099)
Q Consensus 531 ~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l---- 606 (1099)
.|.|.+++...++ .+.|+|.|+|.||+.+.+
T Consensus 463 ~G~I~L~A~~~gn---------------------------------------------~ivIev~DDG~Gid~ekI~~KA 497 (716)
T COG0643 463 EGTITLSAYHEGN---------------------------------------------NIVIEVSDDGAGIDREKIREKA 497 (716)
T ss_pred cceEEEEEEcCCC---------------------------------------------eEEEEEeeCCCCCCHHHHHHHH
Confidence 3667776643322 688999999999987643
Q ss_pred --------------------hhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 607 --------------------NSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 607 --------------------~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
.-||.|=|.+...-+ .-.|-|.||=+||+-|+.+||+|.|+|.. |+||+|++.+|++
T Consensus 498 iErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~Vt-dvSGRGVGMDVVk~~I~~LgG~I~V~S~~--G~GT~Fti~LPLT 574 (716)
T COG0643 498 IERGLITEEEAETLSDEEILNLIFAPGFSTAEQVT-DVSGRGVGMDVVKTNIEQLGGSISVSSEP--GKGTTFTIRLPLT 574 (716)
T ss_pred HHcCCCChHHhccCCHHHHHHHHhcCCCCcchhhh-cccCCccCHHHHHHHHHHcCCEEEEEecC--CCCeEEEEecCcH
Confidence 348888555443322 34699999999999999999999997665 5899999999997
Q ss_pred c
Q 001330 667 A 667 (1099)
Q Consensus 667 ~ 667 (1099)
.
T Consensus 575 L 575 (716)
T COG0643 575 L 575 (716)
T ss_pred H
Confidence 5
No 130
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.81 E-value=4.6e-06 Score=97.55 Aligned_cols=124 Identities=20% Similarity=0.292 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhc
Q 001330 473 LLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIAS 552 (1099)
Q Consensus 473 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~ 552 (1099)
+.+.+..........-++.+..+..... ...-..-..-+.+|+.-.|+||+||+..-.+.|++...++
T Consensus 242 l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~~~--------- 309 (365)
T COG4585 242 LVEALRALLADFEERTGITVDLSLGSEL---ERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERTDD--------- 309 (365)
T ss_pred HHHHHHHHHHHHHhhcCeEEEEecCccc---ccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEcCC---------
Confidence 3344433333334455666665543210 0011235667899999999999999998888887765432
Q ss_pred cccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHH
Q 001330 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632 (1099)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 632 (1099)
.+.++|.|+|+|.+++.. |.|+||.
T Consensus 310 ------------------------------------~l~l~V~DnG~Gf~~~~~-------------------~~~~GL~ 334 (365)
T COG4585 310 ------------------------------------ELRLEVIDNGVGFDPDKE-------------------GGGFGLL 334 (365)
T ss_pred ------------------------------------EEEEEEEECCcCCCcccc-------------------CCCcchh
Confidence 588999999999987542 2589999
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 633 Ivk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
=-|+=|+.+||++.|.|.+ |.||++++.+|+
T Consensus 335 ~mreRv~~lgG~l~i~S~~--g~Gt~i~i~lPl 365 (365)
T COG4585 335 GMRERVEALGGTLTIDSAP--GQGTTVTITLPL 365 (365)
T ss_pred hHHHHHHHcCCEEEEEecC--CCceEEEEecCC
Confidence 9999999999999998765 479999998874
No 131
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.81 E-value=9.6e-07 Score=95.47 Aligned_cols=192 Identities=23% Similarity=0.364 Sum_probs=126.5
Q ss_pred hHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCCcceEEEecH
Q 001330 393 NKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLG--ILNSVMEMSKIEAGKMELVEEEFNL 470 (1099)
Q Consensus 393 ~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~--LIndlLdlskie~g~~~l~~~~~dL 470 (1099)
.|...+.-+.|-+++=|+.|.+++.+-......+ ..+.+.. ...|+.. ++.++|--+ ....++.
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~--~~~~~~~---~~~Ri~sla~~He~L~~s---------~~~~~~~ 83 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE--VLEALRE---SQNRIQSLALIHELLYKS---------GDDTWDF 83 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH--HHHHHHH---HHHHHHHHHHHHHHHhcC---------CcceEcH
Confidence 4555677789999999999999988765543331 2333322 2233322 233333322 2356788
Q ss_pred HHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEcc-HHHHHHHHHHHHHhHhhcc----CCCeEEEEEEEecccc
Q 001330 471 AQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGD-RVKLKQILCNLVSNSMKFT----SEGHISVRAAVKKKSF 545 (1099)
Q Consensus 471 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD-~~rL~QIL~NLL~NAiKfT----~~G~I~v~~~~~~~~~ 545 (1099)
..+++.+...+.+....+++.+..+..+. ..+..| ..-|--|+.-|++||+||. +.|.|.|.....+..
T Consensus 84 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~-----~~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~- 157 (221)
T COG3920 84 ASYLELLASNLFPSYGGKDIRLILDSGPN-----VFLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDG- 157 (221)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEecCCc-----eEECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCC-
Confidence 88888888877765445566666654321 122222 2357789999999999996 357777765443221
Q ss_pred chhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCC
Q 001330 546 KQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625 (1099)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~ 625 (1099)
+ .+.+.|+|+|.|+|.+.- + .
T Consensus 158 ----------------------------------------~--~~~l~v~deg~G~~~~~~------~-----------~ 178 (221)
T COG3920 158 ----------------------------------------G--RFLLTVWDEGGGPPVEAP------L-----------S 178 (221)
T ss_pred ----------------------------------------C--eEEEEEEECCCCCCCCCC------C-----------C
Confidence 0 367899999999997531 1 2
Q ss_pred CccccHHHHHHHH-HhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 626 GLGLGLGIVQSMV-HLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 626 GtGLGLaIvk~lV-e~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
..|+|+.+++.+| ++.||.+..... .|+.|++.+|.+.
T Consensus 179 ~~g~G~~Lv~~lv~~q~~g~~~~~~~----~Gt~~~i~~~~~~ 217 (221)
T COG3920 179 RGGFGLQLVERLVPEQLGGELEDERP----DGTEFRLRFPLSE 217 (221)
T ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcC----CCEEEEEEEeccc
Confidence 4589999999999 999999988532 3899999888753
No 132
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.78 E-value=2.3e-06 Score=103.00 Aligned_cols=181 Identities=20% Similarity=0.242 Sum_probs=105.7
Q ss_pred HhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHHHHHHH
Q 001330 400 KASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVD 479 (1099)
Q Consensus 400 ~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll~~v~~ 479 (1099)
.-.|.|.+=|++|.++++.-. . +...+.+. .|..+.. .++++.+ ...++.+-+.-+..
T Consensus 265 i~pHfL~NtL~~I~~~~~~~~-----~---~~~~~~v~----~l~~llR--~~l~~~~--------~~~~l~~E~~~~~k 322 (456)
T COG2972 265 INPHFLYNTLETIRMLAEEDD-----P---EEAAKVVK----ALSKLLR--YSLSNLD--------NIVTLEIELLLIEK 322 (456)
T ss_pred cchHHHHhHHHHHHHHHHhcC-----H---HHHHHHHH----HHHHHHH--HHhhCCC--------CeeeHHHHHHHHHH
Confidence 347999999999999887521 1 11212222 2222222 1222221 23345554444444
Q ss_pred HHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccC-----CCeEEEEEEEeccccchhhhhccc
Q 001330 480 MYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTS-----EGHISVRAAVKKKSFKQDIIASNR 554 (1099)
Q Consensus 480 ~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~-----~G~I~v~~~~~~~~~~~~~~~~~~ 554 (1099)
..+.+-.+-+..+.+..+.+....+ ..|| .-+|..|++||++|+- .|.|.+.+...
T Consensus 323 yl~iq~~r~~~~le~~~~i~~~~~~---l~~p---~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~------------- 383 (456)
T COG2972 323 YLEIQKLRIGDRLEVPLPIDEELEP---LIDP---KLVLQPLVENAIEHGIEPKRPGGSIAISAKKQ------------- 383 (456)
T ss_pred HHHHHHhccCcceEEEeccCccccc---ccCc---hHHHhHHHHHHHHHhcccCCCCCEEEEEEEEc-------------
Confidence 3333333333333333221111111 2354 4578899999999972 24566654322
Q ss_pred cchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCC-ccccHHH
Q 001330 555 NVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEG-LGLGLGI 633 (1099)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~G-tGLGLaI 633 (1099)
...+.++|.|+|+||+++....+.+. .++ .|+||.=
T Consensus 384 --------------------------------~~~i~i~i~Dng~g~~~~~~~~~~~~-----------~~~r~giGL~N 420 (456)
T COG2972 384 --------------------------------DDVIQISISDNGPGIDEEKLEGLSTK-----------GENRSGIGLSN 420 (456)
T ss_pred --------------------------------CCEEEEEEeeCCCCCChhHHHHHHhh-----------ccCcccccHHH
Confidence 12688999999999999988766432 112 5999999
Q ss_pred HHHHHHhcCCE--EEEEecCCCceeEEEEEEEecc
Q 001330 634 VQSMVHLMKGE--IAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 634 vk~lVe~~gG~--I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
+++.++.+-|. +.++++. +.|++..+.+|..
T Consensus 421 v~~rl~~~~g~~~~~i~s~~--~~gt~v~~~~~~~ 453 (456)
T COG2972 421 VKERLKLYFGEPGLSIDSQP--GKGTFVQIIIPKR 453 (456)
T ss_pred HHHHHHHeeCCcceeEeecC--CCcEEEEEEeehh
Confidence 99999999888 4666665 3688888887753
No 133
>PRK15029 arginine decarboxylase; Provisional
Probab=98.71 E-value=8e-08 Score=119.53 Aligned_cols=116 Identities=11% Similarity=0.159 Sum_probs=89.2
Q ss_pred EEEEEeCCHH--------HHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHH--
Q 001330 964 KFLVVEDDAI--------VLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGW-- 1033 (1099)
Q Consensus 964 ~ILvVdDd~~--------~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~-- 1033 (1099)
+||||||+.. .++.+...|+..||+|..+.++.+|++.+.. ...||+||+|++||+++|+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~----------~~~~DlVLLD~~LPd~dG~~~ 71 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS----------NEAIDCLMFSYQMEHPDEHQN 71 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh----------cCCCcEEEEECCCCCCccchh
Confidence 6999999995 6899999999999999999999999999842 1379999999999999998
Q ss_pred --HHHHHHhccccccCCCccEEEEeccCC--HHHHHHHHHcCCCEEEeCCCCHHHHH-HHHHHHHH
Q 001330 1034 --EATRLIRKEEEQYDVHIPIIALTAHAM--AGVASKIVDAGMDFHLTKPLQKDKLL-DVVKSIDE 1094 (1099)
Q Consensus 1034 --e~~r~IR~~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~ddyL~KPi~~~~L~-~~l~~i~~ 1094 (1099)
+++++||+. ...+|||++|+..+ .+.-...++ -+++|+-+--+..++. ..|....+
T Consensus 72 ~~ell~~IR~~----~~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (755)
T PRK15029 72 VRQLIGKLHER----QQNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADFIAGRAVAAMT 132 (755)
T ss_pred HHHHHHHHHhh----CCCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHHHHHHHHHHHH
Confidence 899999963 24699999999885 222222222 3677888776655543 33444433
No 134
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.66 E-value=1.3e-05 Score=93.42 Aligned_cols=185 Identities=22% Similarity=0.333 Sum_probs=126.8
Q ss_pred hHHHhHHHHHHHHHHHH----HHhcCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHH
Q 001330 401 ASHDVRASLAAIIGLVE----LCHEDA--NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLL 474 (1099)
Q Consensus 401 ~SHELRTPLt~I~g~~e----ll~~~~--~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll 474 (1099)
++-||---|+=...|+. +|+... ...++.++.+..|+...+.--.=+.+||.--|+ ..++-++..-+
T Consensus 376 IAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~AL 448 (574)
T COG3850 376 IARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPPAL 448 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHHHH
Confidence 44455545554444444 444322 334556677788887777666667777765553 33556788889
Q ss_pred HHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEc-cHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhcc
Q 001330 475 EEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRG-DRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASN 553 (1099)
Q Consensus 475 ~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~g-D~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~ 553 (1099)
+++++.|.. +-|+.+.++...+... +.. -...+-||+.-=++||+||+....|.|.+....
T Consensus 449 ~~~~~~f~~---qtg~~~~l~~qlp~~~----lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~----------- 510 (574)
T COG3850 449 EQMLAEFSN---QTGITVTLDYQLPPRA----LPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQND----------- 510 (574)
T ss_pred HHHHHHHHh---ccCCeEEEeccCCCCC----CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecC-----------
Confidence 999988865 5677777764332211 111 234678999999999999999888888764321
Q ss_pred ccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHH
Q 001330 554 RNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633 (1099)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaI 633 (1099)
..+.+.|+|+|+|||+.. ++ +| =-||.|
T Consensus 511 ----------------------------------g~~~~~VeDnG~Gi~~~~-----------e~------~g-HyGL~I 538 (574)
T COG3850 511 ----------------------------------GQVTLTVEDNGVGIDEAA-----------EP------SG-HYGLNI 538 (574)
T ss_pred ----------------------------------CeEEEEEeeCCcCCCCcc-----------CC------CC-CcchHH
Confidence 257899999999999862 11 23 468999
Q ss_pred HHHHHHhcCCEEEEEecCCCceeEEEEEEEe
Q 001330 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664 (1099)
Q Consensus 634 vk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~ 664 (1099)
-+.=++..||++.+++.++| ||.+.++++
T Consensus 539 M~ERA~~L~~~L~i~~~~~g--GT~V~ltf~ 567 (574)
T COG3850 539 MRERAQRLGGQLRIRRREGG--GTEVSLTFP 567 (574)
T ss_pred HHHHHHHhcCeEEEeecCCC--CeEEEEEec
Confidence 99999999999999887754 777777664
No 135
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.66 E-value=1.8e-07 Score=96.31 Aligned_cols=102 Identities=18% Similarity=0.304 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHHHHhHhhccCC----CeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCC
Q 001330 510 DRVKLKQILCNLVSNSMKFTSE----GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNP 585 (1099)
Q Consensus 510 D~~rL~QIL~NLL~NAiKfT~~----G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (1099)
|...++-++..++.||++|+.. |.|.|++.....
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~------------------------------------------ 76 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYED------------------------------------------ 76 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECC------------------------------------------
Confidence 5567888999999999999853 456666543221
Q ss_pred CceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 586 NLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 586 ~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
.+.|.|.|+|+|++++.++..|.+|++.+.... ..+.|+||.++++|++. +.+.+ . .|++|++.-.+
T Consensus 77 ---~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~~--~~~~G~GL~li~~l~d~----v~~~~-~---~G~~v~~~k~~ 143 (161)
T PRK04069 77 ---RLEIVVADNGVSFDYETLKSKLGPYDISKPIED--LREGGLGLFLIETLMDD----VTVYK-D---SGVTVSMTKYI 143 (161)
T ss_pred ---EEEEEEEECCcCCChHHhccccCCCCCCCcccc--cCCCceeHHHHHHHHHh----EEEEc-C---CCcEEEEEEEc
Confidence 588999999999999999999999987654322 23679999999999986 66653 2 36788877655
Q ss_pred c
Q 001330 666 T 666 (1099)
Q Consensus 666 ~ 666 (1099)
+
T Consensus 144 ~ 144 (161)
T PRK04069 144 N 144 (161)
T ss_pred C
Confidence 4
No 136
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.53 E-value=4.2e-07 Score=99.93 Aligned_cols=115 Identities=26% Similarity=0.384 Sum_probs=94.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcC-Ce-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLG-AK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G-~~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+|+++||++..++.+..++.... ++ +..+.++.++++.+.. ..+|++|+|+.||+|+|+++.+.||
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~fldI~~~~~~G~ela~~i~ 70 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG-----------LRPDLVFLDIAMPDINGIELAARIR 70 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhc-----------cCCCeEEEeeccCccchHHHHHHhc
Confidence 379999999999999999998322 23 2368999999988842 3799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
.. .+..+|+++|++. +....+.+..+-||+.||++.+.|...+.+..+
T Consensus 71 ~~----~~~~~Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~ 118 (244)
T COG3279 71 KG----DPRPAIVFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRR 118 (244)
T ss_pred cc----CCCCeEEEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHH
Confidence 75 3457899999875 444556688889999999999999999986533
No 137
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=98.50 E-value=1.2e-06 Score=111.33 Aligned_cols=404 Identities=18% Similarity=0.213 Sum_probs=245.9
Q ss_pred HHHHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcce
Q 001330 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELV 464 (1099)
Q Consensus 385 ~~ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~ 464 (1099)
+++.........++..++|..|+|.+++++....+........+..-.++...+.+..+..+++.-.+.++...|.-...
T Consensus 377 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~ 456 (786)
T KOG0519|consen 377 EEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGE 456 (786)
T ss_pred hhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccc
Confidence 33333444455566677799999999999988854433222223334456677777788999999999999888877667
Q ss_pred EEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhh--ccCCCe-EEEEEEEe
Q 001330 465 EEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMK--FTSEGH-ISVRAAVK 541 (1099)
Q Consensus 465 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiK--fT~~G~-I~v~~~~~ 541 (1099)
...+.+..++++.+..+......+...+.+++..+. +..+.+|..++.|++.+..+++.+ ++..|. ....+...
T Consensus 457 ~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 533 (786)
T KOG0519|consen 457 SIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNL---PKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAE 533 (786)
T ss_pred hhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCC---CccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEec
Confidence 788999999999999988887777777666553332 346888999999999999999999 888774 12222222
Q ss_pred ccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCC
Q 001330 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621 (1099)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~ 621 (1099)
......+. +. ... ..++. .........+.+.+++++.|+...+....|..|-+......
T Consensus 534 ~~~~~vd~--~~--~~~---~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 592 (786)
T KOG0519|consen 534 LLGISVDV--SL--SLS---LAFWF--------------LDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTS 592 (786)
T ss_pred ccCccccc--cc--cch---hhhhh--------------cccccccchheEEeeeccccccCCCcchhhhhhhccccchh
Confidence 11100000 00 000 00000 00111124678999999999999999999888888776655
Q ss_pred CCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecccccccCCCCCCCCCCCCCCCCCCcccccchhhhcc
Q 001330 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWG 701 (1099)
Q Consensus 622 ~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 701 (1099)
+...+.+++++.|++..+.++|.+++.....+ ..-.-..-+.. +....-.......+..........
T Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~--------- 659 (786)
T KOG0519|consen 593 KLSSGSGLSLALCPENSQLMEGNIGLVPSSDG---LPKSPSLCLEA-CLRVELNSMGSKLSGNPEKLAEPR--------- 659 (786)
T ss_pred hcccccccccccchhhHHhhhccccccccccc---CCccHHHHHHh-hccccccccccccCCCcccccCcc---------
Confidence 44468899999999999999999998543321 10000000000 000000000000000000000000
Q ss_pred cccccCCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCC
Q 001330 702 SAAKSEGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASS 781 (1099)
Q Consensus 702 ~~~~~~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 781 (1099)
......|.++++++++...+++...+++. +|.+++.+.++. +++..++
T Consensus 660 ~~~~l~g~~iLlvddn~vn~~Va~~~l~~-~g~~~~~~~sg~---e~l~~~~---------------------------- 707 (786)
T KOG0519|consen 660 DSKLLTGPKILLVDDNPVNRKVATGMLKK-LGAEVTEVNSGQ---EALDKLK---------------------------- 707 (786)
T ss_pred ccccccCCceEEEecccchHHHHHHHHHH-hCCeeEeecCcH---HHHHhcC----------------------------
Confidence 12233789999999999999999999999 999999888554 4444442
Q ss_pred CCCCCCcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccc
Q 001330 782 SSDTGHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAH 861 (1099)
Q Consensus 782 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~ 861 (1099)
....|.++++|-..+-.+. .+...+.++... .+.+++.++....+ .
T Consensus 708 ------------------------------~~~~y~~ifmD~qMP~mDG-~e~~~~irk~~~-~~~pIvAlTa~~~~--~ 753 (786)
T KOG0519|consen 708 ------------------------------PPHSYDVIFMDLQMPEMDG-YEATREIRKKER-WHLPIVALTADADP--S 753 (786)
T ss_pred ------------------------------CCCcccEEEEEcCCcccch-HHHHHHHHHhhc-CCCCEEEEecCCcH--H
Confidence 0122444444443322211 222222222222 44455555443222 2
Q ss_pred cccccccCccccccccCCCcchHHHHHhhc
Q 001330 862 SREYRLLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 862 ~~~~~~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
..+.....|.|.+++||+....|...+..+
T Consensus 754 ~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~ 783 (786)
T KOG0519|consen 754 TEEECLEVGMDGYLSKPFTLEKLVKILREF 783 (786)
T ss_pred HHHHHHHhCCceEEcccccHHHHHHHHHHH
Confidence 234566789999999999998888877643
No 138
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.46 E-value=2.4e-06 Score=87.76 Aligned_cols=100 Identities=19% Similarity=0.319 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhHhhccCC----CeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCC
Q 001330 511 RVKLKQILCNLVSNSMKFTSE----GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPN 586 (1099)
Q Consensus 511 ~~rL~QIL~NLL~NAiKfT~~----G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (1099)
...+.-++..++.||++|+.. |.|.|.+.....
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~------------------------------------------- 76 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYED------------------------------------------- 76 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCC-------------------------------------------
Confidence 345788999999999999843 456666543211
Q ss_pred ceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 587 LLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 587 ~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
.+.+.|.|+|+|++++.++..|.+++..+.... ..+.|+||.|+|+|++ ++.+.+ . .|+++++...+
T Consensus 77 --~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~~--~~~~G~GL~Li~~L~D----~v~~~~-~---~G~~l~l~k~~ 143 (159)
T TIGR01924 77 --RLEIIVSDQGDSFDMDTFKQSLGPYDGSEPIDD--LREGGLGLFLIETLMD----EVEVYE-D---SGVTVAMTKYL 143 (159)
T ss_pred --EEEEEEEEcccccCchhhccccCCCCCCCCccc--CCCCccCHHHHHHhcc----EEEEEe-C---CCEEEEEEEEE
Confidence 578999999999999999999988766544322 2367999999999998 677754 2 24566665444
No 139
>PF14501 HATPase_c_5: GHKL domain
Probab=98.42 E-value=3.3e-06 Score=79.73 Aligned_cols=84 Identities=19% Similarity=0.342 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHHHhHhhccCC----CeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCC
Q 001330 510 DRVKLKQILCNLVSNSMKFTSE----GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNP 585 (1099)
Q Consensus 510 D~~rL~QIL~NLL~NAiKfT~~----G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (1099)
|..-|..+|.|||+||++++.. ..|.+.+...+
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~------------------------------------------- 38 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREEN------------------------------------------- 38 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC-------------------------------------------
Confidence 4556889999999999999743 34555543322
Q ss_pred CceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEec
Q 001330 586 NLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650 (1099)
Q Consensus 586 ~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~ 650 (1099)
..+.|.|++.-.+ +.+.++ . .....+|.|+||.+++++++.++|++.+...
T Consensus 39 --~~~~i~i~N~~~~----~~~~~~----~----~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~ 89 (100)
T PF14501_consen 39 --GFLVIIIENSCEK----EIEKLE----S----SSSKKKGHGIGLKNVKKILEKYNGSLSIESE 89 (100)
T ss_pred --CEEEEEEEECCCC----cccccc----c----cccCCCCCCcCHHHHHHHHHHCCCEEEEEEE
Confidence 1578899998544 222222 1 1123469999999999999999999998654
No 140
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.38 E-value=5.8e-05 Score=86.70 Aligned_cols=130 Identities=27% Similarity=0.370 Sum_probs=87.1
Q ss_pred EEEecHHHHHHHHHHHHHHhHHhc--CCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhcc-----CCCeEEEE
Q 001330 465 EEEFNLAQLLEEVVDMYYHVGIKK--GVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT-----SEGHISVR 537 (1099)
Q Consensus 465 ~~~~dL~~ll~~v~~~~~~~a~~k--~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT-----~~G~I~v~ 537 (1099)
.+.+.|.+.++++-+..+-.-.+- .+++.+++++... + +.. |. =+|.-|+.|||||. +.|.|.++
T Consensus 414 ~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~--~--~~i-P~---filQPLVENAIKHG~~~~~~~g~V~I~ 485 (557)
T COG3275 414 QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELR--Q--VQI-PS---FILQPLVENAIKHGISQLKDTGRVTIS 485 (557)
T ss_pred ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHh--h--ccC-ch---hhhhHHHHHHHHhcccchhcCCceEEE
Confidence 467899999999877654332222 2555555433210 0 111 11 24677899999996 24677777
Q ss_pred EEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhcccccccc
Q 001330 538 AAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617 (1099)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d 617 (1099)
+...+. .++++|+|+|.||+++
T Consensus 486 V~~~d~---------------------------------------------~l~i~VeDng~li~p~------------- 507 (557)
T COG3275 486 VEKEDA---------------------------------------------DLRIEVEDNGGLIQPD------------- 507 (557)
T ss_pred EEEeCC---------------------------------------------eEEEEEecCCCCcCCC-------------
Confidence 654322 4889999999999997
Q ss_pred ccCCCCCCCccccHHHHHHHHHhcCC---EEEEEecCCCceeEEEEEEEeccc
Q 001330 618 ETALGHQEGLGLGLGIVQSMVHLMKG---EIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 618 ~s~~~~~~GtGLGLaIvk~lVe~~gG---~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
...|+|+||+.+.+=++.+=| -+.+++.+. .||++.|.+|...
T Consensus 508 -----~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q--~gTri~f~lp~~~ 553 (557)
T COG3275 508 -----EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQ--AGTRIIFRLPLQR 553 (557)
T ss_pred -----CCCCCChHHHHHHHHHHHhcCccccceEEeccC--CCcEEEEEecCcc
Confidence 125999999999877776666 566665553 5899999998754
No 141
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.35 E-value=1.5e-06 Score=73.75 Aligned_cols=63 Identities=33% Similarity=0.486 Sum_probs=54.0
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001330 395 TFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEA 458 (1099)
Q Consensus 395 ~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~ 458 (1099)
..+++.++|||||||++|.++++.+..... ..+..++++.+..+++++..++++++++++.+.
T Consensus 3 ~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 3 REFLANLSHELRTPLTAIRGYLELLEDTEL-SEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457889999999999999999998876333 334478899999999999999999999999875
No 142
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.27 E-value=4.8e-05 Score=85.06 Aligned_cols=207 Identities=16% Similarity=0.274 Sum_probs=129.0
Q ss_pred HHhHHHHHHHHHHHHHHhcCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc------ceEEEecHHHHH
Q 001330 403 HDVRASLAAIIGLVELCHEDANP--GTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKME------LVEEEFNLAQLL 474 (1099)
Q Consensus 403 HELRTPLt~I~g~~ell~~~~~~--~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~------l~~~~~dL~~ll 474 (1099)
|+.--|.- +.|..|.-.....+ +..++..|+....+=-.+.-|+|+=+-+-- +|+-+ .-....++.++|
T Consensus 146 H~dvv~~l-A~Gl~E~~~~~~dp~~~~~iqyFLdr~y~sRIsiRMLv~qh~~l~~--~~kp~~~~~iG~I~~~c~v~~vi 222 (414)
T KOG0787|consen 146 HNDVVPTL-AQGLIEYREKDGDPVTEKNIQYFLDRFYMSRISIRMLVNQHLLLFA--SGKPDHPRHIGIIDPRCSVKKVI 222 (414)
T ss_pred cchhHHHH-HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhheec--CCCCCCcceeeeeCCCCCHHHHH
Confidence 44433432 24555544333322 334555666555444444456776444332 34332 112467899999
Q ss_pred HHHHHHHHHhHHhcCC---EEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC-----Ce----EEEEEEEec
Q 001330 475 EEVVDMYYHVGIKKGV---DVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE-----GH----ISVRAAVKK 542 (1099)
Q Consensus 475 ~~v~~~~~~~a~~k~i---~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-----G~----I~v~~~~~~ 542 (1099)
+++.+..+..|..+=+ ++.++...... .. ..=|..|.-++.-|+.||++.|-+ |. |.|.+...+
T Consensus 223 ~~a~e~ar~lCd~yy~~sPel~i~~~~a~~---~~-vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gd 298 (414)
T KOG0787|consen 223 KDASENARFLCDQYYLNSPELIIEGHNALS---FT-VYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGD 298 (414)
T ss_pred HHHHHHHHHHHHHhccCCCeeEecCccccc---Cc-cccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCC
Confidence 9999888777665532 33343222111 11 124678999999999999999832 32 444432111
Q ss_pred cccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhcccccccccc---
Q 001330 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET--- 619 (1099)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s--- 619 (1099)
..+.|.|+|.|-||+.++.+++|.=-|.+.+.
T Consensus 299 ---------------------------------------------eDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~ 333 (414)
T KOG0787|consen 299 ---------------------------------------------EDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSS 333 (414)
T ss_pred ---------------------------------------------cceEEEEecCCCCcChhHHHHHHhhhcccCCCCCC
Confidence 13678899999999999999999866654332
Q ss_pred ---CCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEE
Q 001330 620 ---ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNV 663 (1099)
Q Consensus 620 ---~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l 663 (1099)
+...-.|.|-||.|+|.-.+..||.+.+.|-++ -||-..+.+
T Consensus 334 d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG--~GTD~yI~L 378 (414)
T KOG0787|consen 334 DNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEG--IGTDVYIYL 378 (414)
T ss_pred CCCCcCcccccccCCcHHHHHHHHhCCCeeEEeeec--cccceEEEe
Confidence 122225999999999999999999999988773 566555554
No 143
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.11 E-value=1.2e-05 Score=67.57 Aligned_cols=62 Identities=34% Similarity=0.477 Sum_probs=53.6
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001330 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSK 455 (1099)
Q Consensus 394 k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlsk 455 (1099)
+..+.+.++||+||||++|.++++.+.......++..+++..+..++.++..+++++++++|
T Consensus 4 ~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 4 KGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34578889999999999999999998765554567788999999999999999999999874
No 144
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.03 E-value=4e-05 Score=100.39 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=98.0
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHH
Q 001330 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRL 1038 (1099)
Q Consensus 959 ~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~ 1038 (1099)
.+.+++||++||++..+..+..+|+..|+.+..+.++.+ + ....||++++|..||.+++.+.+..
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l-----------~~~~~d~il~~~~~~~~~~~~~~~~ 597 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----L-----------PEAHYDILLLGLPVTFREPLTMLHE 597 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----h-----------ccCCCCEEEecccCCCCCCHHHHHH
Confidence 356789999999999999999999999999999999888 2 1247999999999999887766655
Q ss_pred HhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 001330 1039 IRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1039 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~ 1093 (1099)
....... ...++|+++..........+.+.|+++|+.||+...++...+....
T Consensus 598 ~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 598 RLAKAKS--MTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred HHHhhhh--cCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 5433222 2356888888888889999999999999999999999998887643
No 145
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.94 E-value=7.5e-06 Score=95.52 Aligned_cols=91 Identities=26% Similarity=0.375 Sum_probs=80.2
Q ss_pred CeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHH
Q 001330 987 AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASK 1066 (1099)
Q Consensus 987 ~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~ 1066 (1099)
++|.++..|.+|++.+. ..++|.+++|++||+|+|+++++.+++.+. +++++|+..+..+..+
T Consensus 13 ~~v~~a~~g~~~l~~~~-----------~~~~~~~lld~~m~~~~~~~~~~~lk~~~~------~~v~~t~~~~~~~~~~ 75 (435)
T COG3706 13 KEVATAKKGLIALAILL-----------DHKPDYKLLDVMMPGMDGFELCRRLKAEPA------TVVMVTALDDSAPRVR 75 (435)
T ss_pred hhhhhccchHHHHHHHh-----------cCCCCeEEeecccCCcCchhHHHHHhcCCc------ceEEEEecCCCCcchh
Confidence 46777999999999884 358999999999999999999999997532 3899999999999999
Q ss_pred HHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1067 IVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1067 ~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
.+++|+++|++||++...+..+.+.+..
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~r~~~l~~ 103 (435)
T COG3706 76 GLKAGADDFLTKPVNDSQLFLRAKSLVR 103 (435)
T ss_pred HHhhhhhhhccCCCChHHHHHhhhhhcc
Confidence 9999999999999999999988876643
No 146
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.85 E-value=8e-05 Score=85.20 Aligned_cols=87 Identities=23% Similarity=0.239 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEE
Q 001330 513 KLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEF 592 (1099)
Q Consensus 513 rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 592 (1099)
.+.+++.|||+||+++.. ..|.|.+.. . ....|
T Consensus 22 ~~~~~l~eLi~Na~dA~a-~~I~i~~~~--~--------------------------------------------~~~~i 54 (312)
T TIGR00585 22 RPASVVKELVENSLDAGA-TRIDVEIEE--G--------------------------------------------GLKLI 54 (312)
T ss_pred hHHHHHHHHHHHHHHCCC-CEEEEEEEe--C--------------------------------------------CEEEE
Confidence 578999999999999854 456655421 1 02359
Q ss_pred EEEeCCCCCCcccHhhhccccccccccCC------CCCCCccccHHHHHHHHHhcCCEEEEEecC
Q 001330 593 EVDDTGKGIPKDKQNSIFEEFVQVKETAL------GHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651 (1099)
Q Consensus 593 ~V~DtG~GI~~e~l~~IFe~F~q~d~s~~------~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~ 651 (1099)
.|.|+|.||++++++++|++|++.+.... ...|--|.||+=...+ +++.|.++.
T Consensus 55 ~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~ 114 (312)
T TIGR00585 55 EVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKT 114 (312)
T ss_pred EEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEee
Confidence 99999999999999999999998765321 1223447777644333 367887764
No 147
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00031 Score=80.39 Aligned_cols=110 Identities=16% Similarity=0.276 Sum_probs=76.7
Q ss_pred cHHHHHHHHHHHHHhHhhccCCCe----EEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCC
Q 001330 510 DRVKLKQILCNLVSNSMKFTSEGH----ISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNP 585 (1099)
Q Consensus 510 D~~rL~QIL~NLL~NAiKfT~~G~----I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (1099)
-...|.|++.-|++|++..|.+-+ |.|.+...+
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~------------------------------------------- 69 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIG------------------------------------------- 69 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecC-------------------------------------------
Confidence 344699999999999999997633 444443221
Q ss_pred CceeEEEEEEeCCCCCCcccHhhhcccccccccc-CCCCC-CCccccHHHHHHHHHhcCCE-EEEEecCCC-ceeEEEEE
Q 001330 586 NLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET-ALGHQ-EGLGLGLGIVQSMVHLMKGE-IAIADKEPG-ERGVCFRF 661 (1099)
Q Consensus 586 ~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s-~~~~~-~GtGLGLaIvk~lVe~~gG~-I~v~s~~~g-g~Gt~f~~ 661 (1099)
..++.+.|.|||+|||+++++++|-++.-..+- +..+. |-.|||.+-|--..++.-|+ +.|.|+.++ ++.-.|.+
T Consensus 70 -~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l 148 (538)
T COG1389 70 -KDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYEL 148 (538)
T ss_pred -CceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEE
Confidence 126789999999999999999999986544332 22222 45699999998888988775 667666654 33444444
Q ss_pred EE
Q 001330 662 NV 663 (1099)
Q Consensus 662 ~l 663 (1099)
.+
T Consensus 149 ~i 150 (538)
T COG1389 149 KI 150 (538)
T ss_pred Ee
Confidence 43
No 148
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.43 E-value=0.0015 Score=63.99 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHHHHhHhhccCC----CeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCC
Q 001330 510 DRVKLKQILCNLVSNSMKFTSE----GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNP 585 (1099)
Q Consensus 510 D~~rL~QIL~NLL~NAiKfT~~----G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (1099)
+...+.-++.=++.||++|+.. +.|.|++.....
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~------------------------------------------ 65 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPD------------------------------------------ 65 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCC------------------------------------------
Confidence 4457888999999999999865 356555433221
Q ss_pred CceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEE
Q 001330 586 NLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661 (1099)
Q Consensus 586 ~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~ 661 (1099)
.+.++|.|.|.|+++...+.--..=. ......|+||.|++++++.+ .+ + .. .|+++++
T Consensus 66 ---~l~i~v~D~G~~~d~~~~~~~~~~~~-------~~~~~~G~Gl~li~~l~D~~----~~-~-~~--~gn~v~l 123 (125)
T PF13581_consen 66 ---RLRISVRDNGPGFDPEQLPQPDPWEP-------DSLREGGRGLFLIRSLMDEV----DY-R-ED--GGNTVTL 123 (125)
T ss_pred ---EEEEEEEECCCCCChhhccCcccccC-------CCCCCCCcCHHHHHHHHcEE----EE-E-CC--CeEEEEE
Confidence 58899999999999876543221100 12246799999999999977 44 2 32 4777665
No 149
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=97.14 E-value=0.04 Score=68.43 Aligned_cols=80 Identities=9% Similarity=0.186 Sum_probs=54.4
Q ss_pred cccCchhhHhhhcC--CCCcccccccc--cc-cccceeeeeeee--CCC--ceEEeccchHHHHHHhhhh--hccccEEE
Q 001330 172 VSANASWFQEVINS--TNGYSSLVTGL--NK-EEGSIFLHTFAM--DGT--GFISLGFPAKVVIDLFAAL--DFHGGDLH 240 (1099)
Q Consensus 172 ~~~~~~~~~~~~~~--~~~~~~~~~~~--~~-~~~~~~~~~~~~--~~~--~~i~~~~~~~~~~~~~~~~--~~~~~~~~ 240 (1099)
++.+++||++++.. ..+...|..+. .. .+......+.|| +|+ |+|.+.++.+.+.+.++.. -..+|+++
T Consensus 201 d~~~r~WY~~a~~~~~~~~~~~~~~~~~~d~~tg~~vit~s~pv~~~g~~~GVv~~di~l~~l~~~l~~~~~~~~~g~~~ 280 (570)
T PRK15426 201 QYVTQPWFIGQSQRRNPGRGVRWFTSQPDDASNTEPQVTASVPVDAGNYWYGVLAMDIPVRSLQQFLRNAIDKDLDGEYQ 280 (570)
T ss_pred CcccChHHHhhhhhcCCCCCeeEecCCcccccCCCeEEEEEEEEccCCeEEEEEEEEecHHHHHHHHHHhhccCCCcEEE
Confidence 57788999998652 22223233332 11 122334445666 555 9999999999999999854 25668999
Q ss_pred EEcCCCcEEEe
Q 001330 241 LAAADGQVIIQ 251 (1099)
Q Consensus 241 ~~~~~G~~v~~ 251 (1099)
|.|.+|.+++.
T Consensus 281 Lvd~~G~iia~ 291 (570)
T PRK15426 281 LYDSHLRLLTS 291 (570)
T ss_pred EEcCCCcEEEe
Confidence 99999999994
No 150
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=96.78 E-value=0.012 Score=59.56 Aligned_cols=88 Identities=20% Similarity=0.318 Sum_probs=62.0
Q ss_pred cHHHHHHHHHHHHHhHhhccCC-----CeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccC
Q 001330 510 DRVKLKQILCNLVSNSMKFTSE-----GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERN 584 (1099)
Q Consensus 510 D~~rL~QIL~NLL~NAiKfT~~-----G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (1099)
|-.+++-++.-++.||++|+.+ |.|.|.+.....
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~----------------------------------------- 75 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDG----------------------------------------- 75 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCC-----------------------------------------
Confidence 6678999999999999999865 777776654322
Q ss_pred CCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCC
Q 001330 585 PNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEP 652 (1099)
Q Consensus 585 ~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~ 652 (1099)
.+.+.|.|.|+||. ..+..+++.+...+.. ..-|+||.++++++. ++.+.++.+
T Consensus 76 ----~~~i~i~D~G~~~~--~~~~~~~~~~~~~~~~----~~~G~Gl~l~~~~~D----~~~~~~~~~ 129 (146)
T COG2172 76 ----KLEIRIWDQGPGIE--DLEESLGPGDTTAEGL----QEGGLGLFLAKRLMD----EFSYERSED 129 (146)
T ss_pred ----eEEEEEEeCCCCCC--CHHHhcCCCCCCCccc----ccccccHHHHhhhhe----eEEEEeccC
Confidence 58899999997765 4555666653322211 133999999999886 556654543
No 151
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=96.49 E-value=0.013 Score=45.09 Aligned_cols=54 Identities=30% Similarity=0.529 Sum_probs=47.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP 1028 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP 1028 (1099)
++++++|++..+..+...+...|+.+..+.++.+++..+.. ..||++++|+.+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE-----------EKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh-----------cCCCEEEEeccCC
Confidence 68999999999999999999999999999999999887632 3689999998764
No 152
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.47 E-value=0.011 Score=73.73 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEE
Q 001330 513 KLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEF 592 (1099)
Q Consensus 513 rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 592 (1099)
++..++..||+||+... ...|.|.+.. . ....|
T Consensus 22 ~~~svvkElveNsiDAg-at~I~v~i~~--~--------------------------------------------g~~~i 54 (617)
T PRK00095 22 RPASVVKELVENALDAG-ATRIDIEIEE--G--------------------------------------------GLKLI 54 (617)
T ss_pred CHHHHHHHHHHHHHhCC-CCEEEEEEEe--C--------------------------------------------CeEEE
Confidence 56789999999999965 4456665521 1 13569
Q ss_pred EEEeCCCCCCcccHhhhccccccccccCC------CCCCCccccHHHHHHHHHhcCCEEEEEecCCC-ceeEEEE
Q 001330 593 EVDDTGKGIPKDKQNSIFEEFVQVKETAL------GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG-ERGVCFR 660 (1099)
Q Consensus 593 ~V~DtG~GI~~e~l~~IFe~F~q~d~s~~------~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~g-g~Gt~f~ 660 (1099)
+|.|+|.||++++++.+|.+++..+-... ...|=-|.||+=+-.+ +++.|.++..+ +.|....
T Consensus 55 ~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~~~~~~~~~~~ 124 (617)
T PRK00095 55 RVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRTADAAEGWQIV 124 (617)
T ss_pred EEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEecCCCCceEEEE
Confidence 99999999999999999999886653221 1122346677644443 46777776542 3454444
No 153
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=96.39 E-value=0.024 Score=54.54 Aligned_cols=106 Identities=23% Similarity=0.261 Sum_probs=75.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCcc-EEEEecCCCCCCHHHHHHHHhcc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYD-YIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~D-lIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
||||||||..-+..+..+|+=.|..+..+...+-. .... ....+ ++++...++ ...+.++.+.+.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~-~~~~-----------~~~~~~~~v~~g~~~--~~~~~l~~l~~~ 66 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWS-QADW-----------SSPWEACAVILGSCS--KLAELLKELLKW 66 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHH-Hhhh-----------hcCCcEEEEEecCch--hHHHHHHHHHhh
Confidence 69999999999999999999999999888765541 1111 12344 444444444 455666776653
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i 1092 (1099)
.+++|++++.......... .+-+-|..|++..+|.+.+++.
T Consensus 67 ----~~~~Pvlllg~~~~~~~~~-----nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 67 ----APHIPVLLLGEHDSPEELP-----NVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred ----CCCCCEEEECCCCcccccc-----CeeEecCCCCCHHHHHHHHHHh
Confidence 3579999998776662211 1666799999999999998864
No 154
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=96.00 E-value=0.0041 Score=62.26 Aligned_cols=68 Identities=19% Similarity=0.372 Sum_probs=43.0
Q ss_pred EEEEEeCCCCCCcccHhhhcccccccccc--CCCCCCCcccc--HHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEe
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKET--ALGHQEGLGLG--LGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~s--~~~~~~GtGLG--LaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~ 664 (1099)
.|.|.|+|.||+++++.++|...+..+.. .....|-.|+| +|+. .++..+.|.+...+.. .+++|...
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~-~~~~~~~~ 106 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGES-FTYTIDYD 106 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSS-SEEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCC-cEEEEEEe
Confidence 58999999999999999988655544331 12233567788 4443 4688999988876543 35555443
No 155
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.16 E-value=0.49 Score=46.34 Aligned_cols=107 Identities=11% Similarity=0.023 Sum_probs=75.9
Q ss_pred eCCHHHHHHHHHHHhhcCCeEEEEC---CHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH--HHHHHHHhccc
Q 001330 969 EDDAIVLKVTSAVLGKLGAKFEVCR---NGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG--WEATRLIRKEE 1043 (1099)
Q Consensus 969 dDd~~~~~~l~~~L~~~G~~v~~a~---~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG--~e~~r~IR~~~ 1043 (1099)
|.+..=...+..+|+..||+|.... ..++.++.+.+ ..+|+|.+-..|+..-. -++++++|+..
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~-----------~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ-----------EDVDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------cCCCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 5566667788889999999998653 45666666643 47999999888764322 34555666532
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~ 1090 (1099)
..-+.|++.+....++..+..++|+|+|+..--+.++....++
T Consensus 79 ----~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 79 ----AGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred ----CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 2223455666667777888999999999999888888876654
No 156
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=94.80 E-value=0.84 Score=45.77 Aligned_cols=119 Identities=13% Similarity=0.071 Sum_probs=86.9
Q ss_pred CCCEEEEE----eCCHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC--
Q 001330 961 NGKKFLVV----EDDAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN-- 1031 (1099)
Q Consensus 961 ~~~~ILvV----dDd~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md-- 1031 (1099)
++.+||+. |.+..-..++..+|+..||+|... ...++.++.+.+ ..+|+|.+-..|+...
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~-----------~~~d~V~lS~~~~~~~~~ 70 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE-----------TDADAILVSSLYGHGEID 70 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------cCCCEEEEcCccccCHHH
Confidence 34578888 888888899999999999999875 345666666642 4799999999887432
Q ss_pred HHHHHHHHhccccccCCCccEEEEeccC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1032 GWEATRLIRKEEEQYDVHIPIIALTAHA------MAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1032 G~e~~r~IR~~~~~~~~~ipIIalTa~~------~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
--++.+++|+... .+++|+ +.+.. ..++..++.+.|++.+....-+.+++...+++.+.
T Consensus 71 ~~~~~~~L~~~~~---~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 71 CRGLREKCIEAGL---GDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred HHHHHHHHHhcCC---CCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 3456677765422 245444 44433 45667789999999999999999999998887654
No 157
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.65 E-value=2.8 Score=41.73 Aligned_cols=110 Identities=8% Similarity=-0.030 Sum_probs=76.0
Q ss_pred eCCHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-CCH-HHHHHHHhccc
Q 001330 969 EDDAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-MNG-WEATRLIRKEE 1043 (1099)
Q Consensus 969 dDd~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-mdG-~e~~r~IR~~~ 1043 (1099)
|-+..-..++..+|+..||+|.-. .+.++.++.+.+ ..+|+|.+-..|.. +.. -++++.+++..
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e-----------~~adii~iSsl~~~~~~~~~~~~~~L~~~g 81 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE-----------ADVHVVGVSSLAGGHLTLVPALRKELDKLG 81 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-----------cCCCEEEEcCchhhhHHHHHHHHHHHHhcC
Confidence 445556678899999999999764 457777777743 37899988776632 222 23445555432
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~ 1093 (1099)
. ..++ |++-+....++..+..++|+|+|+..=-+..+..+.+.+..
T Consensus 82 ~---~~i~-vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 82 R---PDIL-VVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred C---CCCE-EEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 1 1344 44565566777888999999999998888888888777644
No 158
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=93.35 E-value=0.16 Score=63.55 Aligned_cols=84 Identities=23% Similarity=0.381 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHHhHhhccCCC---eEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCC
Q 001330 510 DRVKLKQILCNLVSNSMKFTSEG---HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPN 586 (1099)
Q Consensus 510 D~~rL~QIL~NLL~NAiKfT~~G---~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (1099)
+...+.+++.-||+||+.....| .|.|.+. ..
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~--~d------------------------------------------- 68 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLH--AD------------------------------------------- 68 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEe--CC-------------------------------------------
Confidence 56678899999999999875544 3544432 11
Q ss_pred ceeEEEEEEeCCCCCCcccHhh--------hccccccccc---cCCCCCCC-ccccHHHHHHHHHhc
Q 001330 587 LLQFEFEVDDTGKGIPKDKQNS--------IFEEFVQVKE---TALGHQEG-LGLGLGIVQSMVHLM 641 (1099)
Q Consensus 587 ~~~l~i~V~DtG~GI~~e~l~~--------IFe~F~q~d~---s~~~~~~G-tGLGLaIvk~lVe~~ 641 (1099)
-.|+|.|+|+|||.+..+. +|....-..+ ......+| .|.|++.|-.+-+.+
T Consensus 69 ---g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~l 132 (631)
T PRK05559 69 ---GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSRL 132 (631)
T ss_pred ---CcEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhheeeE
Confidence 0489999999999999888 8877432211 11112234 799999888876553
No 159
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=91.84 E-value=0.27 Score=44.15 Aligned_cols=53 Identities=11% Similarity=0.369 Sum_probs=41.7
Q ss_pred eeeeeeee---CCC--ceEEeccchHHHHHHhhhhh-ccccEEEEEcCCCcEEEecccccce
Q 001330 203 IFLHTFAM---DGT--GFISLGFPAKVVIDLFAALD-FHGGDLHLAAADGQVIIQTKLQNTE 258 (1099)
Q Consensus 203 ~~~~~~~~---~~~--~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~v~~~~~~~~~ 258 (1099)
++-.+.|+ +|+ |++.+.+..+.+.+.++.+. ...|+++|.|.+|++|+ +|+.+
T Consensus 14 vi~~s~pi~~~~g~~~Gvv~~di~l~~l~~~i~~~~~~~~g~~~ivd~~G~ii~---hp~~~ 72 (81)
T PF02743_consen 14 VITISVPIYDDDGKIIGVVGIDISLDQLSEIISNIKFGNNGYAFIVDKNGTIIA---HPDKD 72 (81)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEEEHHHHHHHHTTSBBTTTBEEEEEETTSBBCE----SSGG
T ss_pred EEEEEEEEECCCCCEEEEEEEEeccceeeeEEEeeEECCCEEEEEEECCCCEEE---eCChH
Confidence 34455665 344 99999999999999999776 47799999999999999 56543
No 160
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=91.09 E-value=1.6 Score=42.40 Aligned_cols=104 Identities=11% Similarity=0.072 Sum_probs=74.4
Q ss_pred HHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC--CCHHHHHHHHhccccccCCCccEE
Q 001330 976 KVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV--MNGWEATRLIRKEEEQYDVHIPII 1053 (1099)
Q Consensus 976 ~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~--mdG~e~~r~IR~~~~~~~~~ipII 1053 (1099)
..+...|++.|++|+.+.+.++|+..+.. ...+++|++|+. +. ....++++.||.. +..+||.
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~----------~~~i~avvi~~d-~~~~~~~~~ll~~i~~~----~~~iPVF 71 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIES----------FTDIAAVVISWD-GEEEDEAQELLDKIRER----NFGIPVF 71 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHC----------TTTEEEEEEECH-HHHHHHHHHHHHHHHHH----STT-EEE
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHh----------CCCeeEEEEEcc-cccchhHHHHHHHHHHh----CCCCCEE
Confidence 44667788889999999999999999863 357899999986 21 1245678888864 3579999
Q ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCH-HHHHHHHHHHHH
Q 001330 1054 ALTAHAMAGVASKIVDAGMDFHLTKPLQK-DKLLDVVKSIDE 1094 (1099)
Q Consensus 1054 alTa~~~~~~~~~~l~aG~ddyL~KPi~~-~~L~~~l~~i~~ 1094 (1099)
+++.+...+..-...-.-+++|+...-+- +.....|.+..+
T Consensus 72 l~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~ 113 (115)
T PF03709_consen 72 LLAERDTTEDLPAEVLGEVDGFIWLFEDTAEFIARRIEAAAR 113 (115)
T ss_dssp EEESCCHHHCCCHHHHCCESEEEETTTTTHHHHHHHHHHHHH
T ss_pred EEecCCCcccCCHHHHhhccEEEEecCCCHHHHHHHHHHHHH
Confidence 99987755655555666788999887654 444445554443
No 161
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=90.94 E-value=0.34 Score=61.04 Aligned_cols=84 Identities=20% Similarity=0.363 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHHHHhHhhccCCC---eEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCC
Q 001330 510 DRVKLKQILCNLVSNSMKFTSEG---HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPN 586 (1099)
Q Consensus 510 D~~rL~QIL~NLL~NAiKfT~~G---~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (1099)
|+.-|.+++.-||+||+.-...| .|.|.+. ..
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~--~~------------------------------------------- 61 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTIN--DD------------------------------------------- 61 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEe--CC-------------------------------------------
Confidence 55678899999999999843344 4555432 11
Q ss_pred ceeEEEEEEeCCCCCCcccHhh--------hccccccc---cccCC-CCCCCccccHHHHHHHHHhc
Q 001330 587 LLQFEFEVDDTGKGIPKDKQNS--------IFEEFVQV---KETAL-GHQEGLGLGLGIVQSMVHLM 641 (1099)
Q Consensus 587 ~~~l~i~V~DtG~GI~~e~l~~--------IFe~F~q~---d~s~~-~~~~GtGLGLaIvk~lVe~~ 641 (1099)
. .|+|.|+|.|||.+..+. ||.-.... +.... ...|-.|.||+.+-.+-+.+
T Consensus 62 g---~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~inalS~~l 125 (654)
T TIGR01059 62 G---SVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVNALSEWL 125 (654)
T ss_pred C---cEEEEEeCCCcCccccCcCCCCchHHheeeecccCccCCCcceecCCccchhHHHHHHhcCeE
Confidence 0 289999999999874332 33321111 01111 11233799999888877644
No 162
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.60 E-value=0.54 Score=46.42 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=21.3
Q ss_pred HHHHHHHHhHhhccCCCeEEEEEEEe
Q 001330 516 QILCNLVSNSMKFTSEGHISVRAAVK 541 (1099)
Q Consensus 516 QIL~NLL~NAiKfT~~G~I~v~~~~~ 541 (1099)
-+..-||.||+||...|.|.|.+...
T Consensus 66 Yl~NELiENAVKfra~geIvieasl~ 91 (184)
T COG5381 66 YLANELIENAVKFRATGEIVIEASLY 91 (184)
T ss_pred HHHHHHHHhhhcccCCCcEEEEEEec
Confidence 45677999999999999988877543
No 163
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=90.56 E-value=1.1 Score=42.99 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=79.3
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHH--
Q 001330 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEAT-- 1036 (1099)
Q Consensus 959 ~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~-- 1036 (1099)
.+.|++.+.||-|..-......+|.+.|.+|+.-....+- ....||++|+.+-.+-.+-..+-
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~l---------------p~~hYD~~Ll~vavtfr~n~tm~~~ 72 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSAL---------------PPAHYDMMLLGVAVTFRENLTMQHE 72 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEeccccccc---------------ChhhhceeeecccccccCCchHHHH
Confidence 3578999999999999999999999999998875433321 23369999999987765554433
Q ss_pred HHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 001330 1037 RLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089 (1099)
Q Consensus 1037 r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l 1089 (1099)
+-.|+..- .+--|+++-.++. ...++.++-|+-++|.||++...|...+
T Consensus 73 ~l~~Al~m---td~vilalPs~~q-v~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 73 RLAKALSM---TDFVILALPSHAQ-VNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred HHHHHHhh---hcceEEecCcHHH-HhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 12222211 1334666655443 3456778899999999999999998844
No 164
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=90.06 E-value=3.2 Score=40.19 Aligned_cols=94 Identities=12% Similarity=0.047 Sum_probs=63.6
Q ss_pred eCCHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC--CHHHHHHHHhccc
Q 001330 969 EDDAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM--NGWEATRLIRKEE 1043 (1099)
Q Consensus 969 dDd~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m--dG~e~~r~IR~~~ 1043 (1099)
|.+..-..++..+|+..||+|... ...++.++.+. ...||+|.+-..+... +..++++.+|+..
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~-----------~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK-----------EEDADAIGLSGLLTTHMTLMKEVIEELKEAG 78 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-----------HcCCCEEEEeccccccHHHHHHHHHHHHHcC
Confidence 556667788999999999999654 23445555553 2479999998876543 3456677777642
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
+ .+++ |++.+.........+.+.|+|.|+.
T Consensus 79 ~---~~~~-i~vGG~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 79 L---DDIP-VLVGGAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred C---CCCe-EEEECCCCChhHHHHHHcCCeEEEC
Confidence 1 1444 5566655555556788999988876
No 165
>PRK05218 heat shock protein 90; Provisional
Probab=90.01 E-value=0.93 Score=56.72 Aligned_cols=59 Identities=10% Similarity=0.305 Sum_probs=38.2
Q ss_pred EEEEEeCCCCCCcccHhhhccccccc-----------c-ccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCC
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEEFVQV-----------K-ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~F~q~-----------d-~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~g 653 (1099)
.|.|.|||+||+++++..-|.+.-+. + .....-.|-.|+|+.= +=+.+-++.|.++..+
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S----~f~va~~v~V~Sr~~~ 144 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYS----AFMVADKVTVITRSAG 144 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchh----hhhccCEEEEEEcCCC
Confidence 48999999999999998876443322 0 0111223567899852 3344568999887643
No 166
>PRK14083 HSP90 family protein; Provisional
Probab=89.89 E-value=0.33 Score=60.23 Aligned_cols=20 Identities=20% Similarity=0.542 Sum_probs=18.0
Q ss_pred EEEEEeCCCCCCcccHhhhc
Q 001330 591 EFEVDDTGKGIPKDKQNSIF 610 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IF 610 (1099)
.|.|.|||+||+++++.+.|
T Consensus 64 ~l~I~DnGiGmt~eel~~~l 83 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFL 83 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHH
Confidence 58999999999999988875
No 167
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=89.78 E-value=1.8 Score=40.53 Aligned_cols=111 Identities=17% Similarity=0.255 Sum_probs=70.3
Q ss_pred EEEEecChHHHHHHHHHhhhccCc-eEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 711 MILFIAGEERRRVLKRYIENSLNI-KVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 711 v~l~~~~~~~~~~l~~~l~~~~g~-~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
|+++++++..+..+..++.. .|+ .+..+.+.+.....+++.
T Consensus 1 Ilivd~~~~~~~~l~~~l~~-~~~~~v~~~~~~~~~~~~~~~~------------------------------------- 42 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLER-AGYEEVTTASSGEEALELLKKH------------------------------------- 42 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHH-TTEEEEEEESSHHHHHHHHHHS-------------------------------------
T ss_pred cEEEECCHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHhccc-------------------------------------
Confidence 56788889999999999995 888 888888887666555432
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
.+.++++|..... .+....++.++... ..++++.+..... ..........
T Consensus 43 -------------------------~~d~iiid~~~~~-~~~~~~~~~i~~~~--~~~~ii~~t~~~~--~~~~~~~~~~ 92 (112)
T PF00072_consen 43 -------------------------PPDLIIIDLELPD-GDGLELLEQIRQIN--PSIPIIVVTDEDD--SDEVQEALRA 92 (112)
T ss_dssp -------------------------TESEEEEESSSSS-SBHHHHHHHHHHHT--TTSEEEEEESSTS--HHHHHHHHHT
T ss_pred -------------------------CceEEEEEeeecc-cccccccccccccc--ccccEEEecCCCC--HHHHHHHHHC
Confidence 1345566654433 22234444444443 3344554443222 1223344568
Q ss_pred ccccccccCCCcchHHHHHh
Q 001330 870 ICDHVISRPFHGSRLIEVLK 889 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~ 889 (1099)
+.+.++.||+...+|.+.++
T Consensus 93 g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 93 GADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp TESEEEESSSSHHHHHHHHH
T ss_pred CCCEEEECCCCHHHHHHhhC
Confidence 88999999999999887763
No 168
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=88.39 E-value=0.47 Score=59.47 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=25.4
Q ss_pred EEEEEeCCCCCCcccHhhhccccccccc
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKE 618 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~ 618 (1099)
.|.|.|||+||++++++-.+.|+.+.+-
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSKI 81 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSKI 81 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhccccC
Confidence 4899999999999999999999987653
No 169
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=86.84 E-value=8.3 Score=42.20 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=68.2
Q ss_pred eCCHHHHHHHHHHHhhcCCeEE-EE-CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC---------CCCHHHHHH
Q 001330 969 EDDAIVLKVTSAVLGKLGAKFE-VC-RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP---------VMNGWEATR 1037 (1099)
Q Consensus 969 dDd~~~~~~l~~~L~~~G~~v~-~a-~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP---------~mdG~e~~r 1037 (1099)
.|.....+..+.+. +.||.|. .| .|...|-++. + ..+++| || +..-.++++
T Consensus 107 pd~~~tv~aa~~L~-~~Gf~vlpyc~dd~~~ar~l~-~-----------~G~~~v-----mPlg~pIGsg~Gi~~~~~I~ 168 (248)
T cd04728 107 PDPIETLKAAEILV-KEGFTVLPYCTDDPVLAKRLE-D-----------AGCAAV-----MPLGSPIGSGQGLLNPYNLR 168 (248)
T ss_pred cCHHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHH-H-----------cCCCEe-----CCCCcCCCCCCCCCCHHHHH
Confidence 34444455555444 4699887 44 5555554433 2 256776 77 221278888
Q ss_pred HHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEE-----EeCCCCHHHHHHHHHHHHH
Q 001330 1038 LIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH-----LTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1038 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddy-----L~KPi~~~~L~~~l~~i~~ 1094 (1099)
.|++. ..+|||+=.+-..+++..++++.|+|+. |+|.-++..+.++.....+
T Consensus 169 ~I~e~-----~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~ 225 (248)
T cd04728 169 IIIER-----ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVE 225 (248)
T ss_pred HHHHh-----CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHH
Confidence 88864 2589998888899999999999999998 4565566666666555443
No 170
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=86.56 E-value=5.4 Score=50.50 Aligned_cols=116 Identities=9% Similarity=0.043 Sum_probs=74.2
Q ss_pred EEEEEeCCH-HH-----HHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHH
Q 001330 964 KFLVVEDDA-IV-----LKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATR 1037 (1099)
Q Consensus 964 ~ILvVdDd~-~~-----~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r 1037 (1099)
+|++|+++- .+ .+.+...|++.|++|..+.+..+++..+.+ ....++|++|++-. ..++++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---~~~~~~ 68 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEH----------NPRICGVIFDWDEY---SLDLCS 68 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhc----------ccceeEEEEecccc---hHHHHH
Confidence 577777663 22 345667788899999999999999988752 34688999996433 355888
Q ss_pred HHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHHh
Q 001330 1038 LIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ-KDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1038 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~-~~~L~~~l~~i~~~~ 1096 (1099)
.+|+. +..+||+++.............-.-.++|+..--+ .+.....|.+..+.+
T Consensus 69 ~~~~~----~~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~y 124 (713)
T PRK15399 69 DINQL----NEYLPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEY 124 (713)
T ss_pred HHHHh----CCCCCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHHH
Confidence 88864 34699999987654443333333345666664433 333333344444433
No 171
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=86.37 E-value=1.4 Score=55.44 Aligned_cols=84 Identities=21% Similarity=0.359 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHHHhHhhccCCC---eEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCC
Q 001330 510 DRVKLKQILCNLVSNSMKFTSEG---HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPN 586 (1099)
Q Consensus 510 D~~rL~QIL~NLL~NAiKfT~~G---~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (1099)
|+.-|.+++.-||+||+.-...| .|.|.+. ..
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~--~~------------------------------------------- 68 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTIN--ED------------------------------------------- 68 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEe--CC-------------------------------------------
Confidence 56678899999999999844445 4555432 11
Q ss_pred ceeEEEEEEeCCCCCCcccHhh--------hccccccc---cccCCC-CCCCccccHHHHHHHHHhc
Q 001330 587 LLQFEFEVDDTGKGIPKDKQNS--------IFEEFVQV---KETALG-HQEGLGLGLGIVQSMVHLM 641 (1099)
Q Consensus 587 ~~~l~i~V~DtG~GI~~e~l~~--------IFe~F~q~---d~s~~~-~~~GtGLGLaIvk~lVe~~ 641 (1099)
. .|+|.|+|.|||.+..+. ||.-.... +....+ ..|=.|.||+.+-.+-+.+
T Consensus 69 g---~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~~~ 132 (638)
T PRK05644 69 G---SITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSTWL 132 (638)
T ss_pred C---cEEEEEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhhheeceE
Confidence 0 489999999999974432 44322111 111111 1233699999888777644
No 172
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=85.30 E-value=0.91 Score=57.20 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=17.1
Q ss_pred EEEEEEeCCCCCCcccHhhhc
Q 001330 590 FEFEVDDTGKGIPKDKQNSIF 610 (1099)
Q Consensus 590 l~i~V~DtG~GI~~e~l~~IF 610 (1099)
..+.|.|||+||+++++.+-+
T Consensus 72 ~~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 72 KTLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred CEEEEEECCCCCCHHHHHHHh
Confidence 368999999999999866544
No 173
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=85.04 E-value=0.82 Score=57.22 Aligned_cols=51 Identities=25% Similarity=0.413 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCCccc--------Hhhhc-cccccccc--cCCCCCCC-ccccHHHHHHHHHhc
Q 001330 591 EFEVDDTGKGIPKDK--------QNSIF-EEFVQVKE--TALGHQEG-LGLGLGIVQSMVHLM 641 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~--------l~~IF-e~F~q~d~--s~~~~~~G-tGLGLaIvk~lVe~~ 641 (1099)
.|+|.|+|.|||.+. ++-+| .+....+- ...+.++| .|.||+.+-.+-+.+
T Consensus 63 ~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~l 125 (625)
T TIGR01055 63 SIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKRV 125 (625)
T ss_pred eEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCeE
Confidence 389999999999988 77777 44322211 11112234 799999988887743
No 174
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=84.95 E-value=14 Score=36.97 Aligned_cols=109 Identities=9% Similarity=0.002 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC--HHHHHHHHhccccc
Q 001330 971 DAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN--GWEATRLIRKEEEQ 1045 (1099)
Q Consensus 971 d~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md--G~e~~r~IR~~~~~ 1045 (1099)
+..-..++..+|+..||+|.-. ...++.++.+.+ ..+|+|-+-..|-..- --++.+++|+...
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~-----------~~adiVglS~l~~~~~~~~~~~~~~l~~~gl- 81 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE-----------TKADAILVSSLYGHGEIDCKGLRQKCDEAGL- 81 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------cCCCEEEEecccccCHHHHHHHHHHHHHCCC-
Confidence 3445577889999999999864 566777777643 4799999988775322 2345566665321
Q ss_pred cCCCccEEEEeccC--CHH----HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1046 YDVHIPIIALTAHA--MAG----VASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1046 ~~~~ipIIalTa~~--~~~----~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
.. +.|++-+.. ..+ ...+..+.|++......-.++++.+.|++.++
T Consensus 82 --~~-~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 82 --EG-ILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred --CC-CEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 13 345566532 122 24568899999999988899999998887653
No 175
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=84.19 E-value=3.3 Score=47.68 Aligned_cols=84 Identities=10% Similarity=0.133 Sum_probs=57.7
Q ss_pred CCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEec-cCCHHHH
Q 001330 986 GAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTA-HAMAGVA 1064 (1099)
Q Consensus 986 G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa-~~~~~~~ 1064 (1099)
|.++..+.+..++-..+ ..-.+|++|..| . -..++...+ .+..+|++++ ..+.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~-----~--~~~~~~~~p---~~~~vv~v~~~~~~~~~~ 57 (322)
T TIGR03815 1 GVELDVAPDPEAARRAW-------------ARAPLVLVDADM-----A--EACAAAGLP---RRRRVVLVGGGEPGGALW 57 (322)
T ss_pred CCceEEccCchhhhhcc-------------ccCCeEEECchh-----h--hHHHhccCC---CCCCEEEEeCCCCCHHHH
Confidence 45677777766654443 245799999754 1 112332222 1234665555 5568889
Q ss_pred HHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 001330 1065 SKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1065 ~~~l~aG~ddyL~KPi~~~~L~~~l~~i 1092 (1099)
..++++|+.+|+.+|++..+|.+.+.++
T Consensus 58 ~~a~~~Ga~~~l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 58 RAAAAVGAEHVAVLPEAEGWLVELLADL 85 (322)
T ss_pred HHHHHhChhheeeCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999876
No 176
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=82.95 E-value=9.1 Score=48.50 Aligned_cols=116 Identities=10% Similarity=0.085 Sum_probs=71.6
Q ss_pred EEEEEeCCH-H-----HHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHH
Q 001330 964 KFLVVEDDA-I-----VLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATR 1037 (1099)
Q Consensus 964 ~ILvVdDd~-~-----~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r 1037 (1099)
+||+|+++. . -.+.+..-|++.|++|..+.+..+++..+.+ ....++|++|++- ...++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~---~~~~~~~ 68 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIEN----------NARLCGVIFDWDK---YNLELCE 68 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc----------ccceeEEEEecch---hhHHHHH
Confidence 466666552 1 1455667788899999999999999988752 3468899999533 2245888
Q ss_pred HHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHHh
Q 001330 1038 LIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ-KDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1038 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~-~~~L~~~l~~i~~~~ 1096 (1099)
.+|+. +..+||+++.......++-...-.-.++|+..--+ .+.....|.+..+.+
T Consensus 69 ~~~~~----~~~~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~~y 124 (714)
T PRK15400 69 EISKM----NENLPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTDEY 124 (714)
T ss_pred HHHHh----CCCCCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHHHH
Confidence 88864 34699999987544333222222334556553333 334334344444433
No 177
>PRK00208 thiG thiazole synthase; Reviewed
Probab=82.63 E-value=21 Score=39.18 Aligned_cols=100 Identities=17% Similarity=0.137 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhcCCeEE-EE-CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC---------CCCHHHHHHHHh
Q 001330 972 AIVLKVTSAVLGKLGAKFE-VC-RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP---------VMNGWEATRLIR 1040 (1099)
Q Consensus 972 ~~~~~~l~~~L~~~G~~v~-~a-~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP---------~mdG~e~~r~IR 1040 (1099)
....+..+.+. +.||.|. .| .|..+|-++. + ..+|+| || +..-.+.++.|+
T Consensus 110 ~~tv~aa~~L~-~~Gf~vlpyc~~d~~~ak~l~-~-----------~G~~~v-----mPlg~pIGsg~gi~~~~~i~~i~ 171 (250)
T PRK00208 110 IETLKAAEILV-KEGFVVLPYCTDDPVLAKRLE-E-----------AGCAAV-----MPLGAPIGSGLGLLNPYNLRIII 171 (250)
T ss_pred HHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHH-H-----------cCCCEe-----CCCCcCCCCCCCCCCHHHHHHHH
Confidence 34444444444 5699887 44 5666654433 2 256777 77 121267888888
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEE-----EeCCCCHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH-----LTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddy-----L~KPi~~~~L~~~l~~i~~ 1094 (1099)
+. ..+|||+=.+-...++..++++.|+|+. |+|--++..+.++.....+
T Consensus 172 e~-----~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~ 225 (250)
T PRK00208 172 EQ-----ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVE 225 (250)
T ss_pred Hh-----cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHH
Confidence 64 2589999888899999999999999998 4575566666666555443
No 178
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=80.31 E-value=48 Score=33.49 Aligned_cols=118 Identities=14% Similarity=0.056 Sum_probs=78.7
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhcCCeEEE---ECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHH
Q 001330 962 GKKFLVV----EDDAIVLKVTSAVLGKLGAKFEV---CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWE 1034 (1099)
Q Consensus 962 ~~~ILvV----dDd~~~~~~l~~~L~~~G~~v~~---a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e 1034 (1099)
..|||++ |-+..-.+++...|+..||+|.. .....|+++...+ ...|+|.+... .....+
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~-----------~dv~vIgvSsl--~g~h~~ 78 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE-----------EDVDVIGVSSL--DGGHLT 78 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh-----------cCCCEEEEEec--cchHHH
Confidence 3466665 77777789999999999999986 5788999887732 36787777542 222334
Q ss_pred HHHHHhccccccCC-CccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 001330 1035 ATRLIRKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1035 ~~r~IR~~~~~~~~-~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~ 1093 (1099)
++..+++.-...+. ++. ++.-+.-..++..+..+.|++.++.--....+...-+...+
T Consensus 79 l~~~lve~lre~G~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 79 LVPGLVEALREAGVEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred HHHHHHHHHHHhCCcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 44444332222222 333 46677778888888999999999986676666665555443
No 179
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=78.36 E-value=12 Score=41.06 Aligned_cols=114 Identities=17% Similarity=0.279 Sum_probs=72.9
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
+++++.+++.....+..+++. .|+.+..+.+.+.....+.
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~-~g~~v~~~~~~~~a~~~~~--------------------------------------- 41 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEE-EGYEVDVAADGEEALEAAR--------------------------------------- 41 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHh---------------------------------------
Confidence 578888999999999999999 8999999887754332211
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
.. +.++++|...+.. +.....+..+.. .....+++.+...+ ....+...+..
T Consensus 42 -----------------------~~-~dlviLD~~lP~~-dG~~~~~~iR~~-~~~~~PIi~Lta~~--~~~d~v~gl~~ 93 (229)
T COG0745 42 -----------------------EQ-PDLVLLDLMLPDL-DGLELCRRLRAK-KGSGPPIIVLTARD--DEEDRVLGLEA 93 (229)
T ss_pred -----------------------cC-CCEEEEECCCCCC-CHHHHHHHHHhh-cCCCCcEEEEECCC--cHHHHHHHHhC
Confidence 11 4567777765432 223333444422 22233345444331 22334466778
Q ss_pred ccccccccCCCcchHHHHHhhc
Q 001330 870 ICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
|+|.++.||+....|.--++.+
T Consensus 94 GADDYl~KPf~~~EL~ARi~a~ 115 (229)
T COG0745 94 GADDYLTKPFSPRELLARLRAL 115 (229)
T ss_pred cCCeeeeCCCCHHHHHHHHHHH
Confidence 9999999999998887777654
No 180
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=78.28 E-value=47 Score=32.99 Aligned_cols=105 Identities=11% Similarity=0.070 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-CCH-HHHHHHHhccccc
Q 001330 971 DAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-MNG-WEATRLIRKEEEQ 1045 (1099)
Q Consensus 971 d~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-mdG-~e~~r~IR~~~~~ 1045 (1099)
+..-..++..+|+..||+|.-. ...++.++.+.+ ..+|+|.+-..|.. |.. -++.+.+|+...
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~-----------~~adiVglS~L~t~~~~~~~~~~~~l~~~gl- 79 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE-----------TDADAILVSSLYGHGEIDCKGLREKCDEAGL- 79 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------cCCCEEEEeccccCCHHHHHHHHHHHHHCCC-
Confidence 3444567888999999999753 556666666643 47999999887754 333 356666765321
Q ss_pred cCCCccEEEEeccC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 001330 1046 YDVHIPIIALTAHA------MAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090 (1099)
Q Consensus 1046 ~~~~ipIIalTa~~------~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~ 1090 (1099)
.++||+ +-+.. ..++..+..+.|++......-+++++.+.|+
T Consensus 80 --~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 80 --KDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred --CCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 245544 44442 1445567889999999998888888877665
No 181
>PTZ00130 heat shock protein 90; Provisional
Probab=76.49 E-value=3 Score=53.09 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCCcccHhh
Q 001330 591 EFEVDDTGKGIPKDKQNS 608 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~ 608 (1099)
.|+|.|||+||+++++..
T Consensus 136 tLtI~DnGIGMT~eEl~~ 153 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLIN 153 (814)
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 478999999999998654
No 182
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=75.98 E-value=17 Score=34.95 Aligned_cols=93 Identities=17% Similarity=0.264 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEec-CCCCC-CHHHHHHHHhccccc
Q 001330 971 DAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC-EMPVM-NGWEATRLIRKEEEQ 1045 (1099)
Q Consensus 971 d~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi-~MP~m-dG~e~~r~IR~~~~~ 1045 (1099)
.+.-...+..+|++.|++|... .+.++..+.+.+ ..||+|.+.+ ..+.. ...++++.+|+.
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~-----------~~pd~V~iS~~~~~~~~~~~~l~~~~k~~--- 78 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRA-----------ERPDVVGISVSMTPNLPEAKRLARAIKER--- 78 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHH-----------TTCSEEEEEESSSTHHHHHHHHHHHHHTT---
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhc-----------CCCcEEEEEccCcCcHHHHHHHHHHHHhc---
Confidence 3556788999999999999876 334555555532 3799999998 44443 234566666643
Q ss_pred cCCCccEEEEeccCCHHHHHHHHH--cCCCEEEeCC
Q 001330 1046 YDVHIPIIALTAHAMAGVASKIVD--AGMDFHLTKP 1079 (1099)
Q Consensus 1046 ~~~~ipIIalTa~~~~~~~~~~l~--aG~ddyL~KP 1079 (1099)
.++++|++ -+......-..+++ .|+|..+.-.
T Consensus 79 -~p~~~iv~-GG~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 79 -NPNIPIVV-GGPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp -CTTSEEEE-EESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred -CCCCEEEE-ECCchhcChHHHhccCcCcceecCCC
Confidence 34555554 44433334445555 7888876543
No 183
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=74.50 E-value=1.8 Score=53.98 Aligned_cols=49 Identities=24% Similarity=0.437 Sum_probs=27.9
Q ss_pred EEEEEeCCCCCCcccHh--------hhccccccc---cccCCC-CCCCccccHHHHHHHHH
Q 001330 591 EFEVDDTGKGIPKDKQN--------SIFEEFVQV---KETALG-HQEGLGLGLGIVQSMVH 639 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~--------~IFe~F~q~---d~s~~~-~~~GtGLGLaIvk~lVe 639 (1099)
.|+|.|+|.|||-+..+ -||...... +..... ..|=.|.||+.+-.+-+
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS~ 94 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALST 94 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhcC
Confidence 48999999999976543 233322111 111111 12336999998777643
No 184
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=70.17 E-value=61 Score=41.51 Aligned_cols=116 Identities=10% Similarity=0.011 Sum_probs=78.9
Q ss_pred EEEEE----eCCHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC--CHHH
Q 001330 964 KFLVV----EDDAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM--NGWE 1034 (1099)
Q Consensus 964 ~ILvV----dDd~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m--dG~e 1034 (1099)
+|++. |.+..-...+..+|+..||+|..- .+.+++++.+.+ ..+|+|.+...+... ..-+
T Consensus 584 kV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~-----------~~a~ivvlcs~d~~~~e~~~~ 652 (714)
T PRK09426 584 RILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVE-----------NDVHVVGVSSLAAGHKTLVPA 652 (714)
T ss_pred eEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHH-----------cCCCEEEEeccchhhHHHHHH
Confidence 56544 334455678889999999999643 356777777743 368888887665433 2446
Q ss_pred HHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1035 ATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1035 ~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
+++.||+... .+++ |++.+...+++...+.++|+|+|+..=.+..++.+.+.+.+.
T Consensus 653 l~~~Lk~~G~---~~v~-vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 653 LIEALKKLGR---EDIM-VVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred HHHHHHhcCC---CCcE-EEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 7777776421 1233 445555445556778899999999999998888888877664
No 185
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=69.61 E-value=38 Score=36.67 Aligned_cols=100 Identities=11% Similarity=0.053 Sum_probs=65.9
Q ss_pred CEEEEE----eCCHHHHHHHHHHHhhcCCeEEEEC---CHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC-C-HH
Q 001330 963 KKFLVV----EDDAIVLKVTSAVLGKLGAKFEVCR---NGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM-N-GW 1033 (1099)
Q Consensus 963 ~~ILvV----dDd~~~~~~l~~~L~~~G~~v~~a~---~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m-d-G~ 1033 (1099)
.+|++. |.+..=..++..+|+..||+|.... ..++.++.+.+ ..||+|.+-..|+.- . --
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~-----------~~~~~V~lS~~~~~~~~~~~ 157 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE-----------HKADIIGLSGLLVPSLDEMV 157 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-----------cCCCEEEEccchhccHHHHH
Confidence 477777 7777778889999999999998753 35555566532 479999999988742 2 23
Q ss_pred HHHHHHhccccccCCCccEEEEeccCCHHHHHH---HHHcCCCEEEe
Q 001330 1034 EATRLIRKEEEQYDVHIPIIALTAHAMAGVASK---IVDAGMDFHLT 1077 (1099)
Q Consensus 1034 e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~---~l~aG~ddyL~ 1077 (1099)
++++++|+. +.+++|++--+-...+...+ +-..|+|.|-.
T Consensus 158 ~~i~~L~~~----~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~ 200 (213)
T cd02069 158 EVAEEMNRR----GIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVK 200 (213)
T ss_pred HHHHHHHhc----CCCCeEEEEChhcCHHHHhhhhccccCCCceEec
Confidence 556677654 23566655443333333322 24579998865
No 186
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=68.92 E-value=48 Score=35.36 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=66.3
Q ss_pred CEEEEE----eCCHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC--CHH
Q 001330 963 KKFLVV----EDDAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM--NGW 1033 (1099)
Q Consensus 963 ~~ILvV----dDd~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m--dG~ 1033 (1099)
.+|++. |-+..=..++..+|+..||+|... -..++.++.+. ...||+|-+-+.|+.. +..
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~-----------~~~~d~v~lS~~~~~~~~~~~ 151 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK-----------EHKPDILGLSALMTTTMGGMK 151 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-----------HcCCCEEEEeccccccHHHHH
Confidence 478877 677777888999999999998754 24556566653 2479999999987754 334
Q ss_pred HHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1034 EATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1034 e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
++++.+|+... ..+++|++ -+.....+ -+...|+|.|-.
T Consensus 152 ~~i~~lr~~~~--~~~~~i~v-GG~~~~~~--~~~~~GaD~~~~ 190 (201)
T cd02070 152 EVIEALKEAGL--RDKVKVMV-GGAPVNQE--FADEIGADGYAE 190 (201)
T ss_pred HHHHHHHHCCC--CcCCeEEE-ECCcCCHH--HHHHcCCcEEEC
Confidence 56677776422 12456554 44444333 466779998875
No 187
>PF07379 DUF1494: Protein of unknown function (DUF1494); InterPro: IPR009968 This family consists of several bacterial proteins of around 175 residues in length. Members of this family seem to be found exclusively in Chlamydia species. The function of this family is unknown.
Probab=68.69 E-value=9 Score=38.59 Aligned_cols=54 Identities=24% Similarity=0.224 Sum_probs=35.8
Q ss_pred ceeEeeccceeeE--EEecCCceEEEEecCCCC-----cceeeccccCccccccccccccCCccccCchhhHhhhc
Q 001330 116 LVSYLGLDGLSFS--YFNDGDQTLAVYSNSSFA-----ANWYTQPVNRDTGMLYGNAIASIPIVSANASWFQEVIN 184 (1099)
Q Consensus 116 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 184 (1099)
.++.-..+|++|| |+|- +|.|+... +.|| |+.+||+-=.-. ..+|.+.++..+-
T Consensus 62 t~s~~e~pg~~fslvFDrG------Vy~Dp~lAGeV~G~L~y----d~~~~RL~L~i~-----s~r~~~~~Et~~L 122 (170)
T PF07379_consen 62 TSSIEEKPGLLFSLVFDRG------VYRDPELAGEVQGSLHY----DKQDGRLELQIR-----SLRNESKQETQLL 122 (170)
T ss_pred hhhhccCCCcEEEEEeccc------cccChhhhhheeeEEEE----cCCCCEEEEEEe-----eccchhhHHHHHH
Confidence 3444778999998 7664 67776433 3798 788999622222 5677777776643
No 188
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=63.94 E-value=28 Score=42.00 Aligned_cols=116 Identities=16% Similarity=0.254 Sum_probs=73.5
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.++++++++...|..++..++. .|+.+..+.+.++....+..-
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~-~G~~v~~a~~~~~al~~i~~~------------------------------------ 47 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALEL-AGYEVVTAESAEEALEALSES------------------------------------ 47 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHH-cCCeEEEeCCHHHHHHHHhcC------------------------------------
Confidence 4588899999999999999999 899999998887554433211
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+.. +....++.++...+.. +++.+..+.. .+.--.+..
T Consensus 48 --------------------------~~~lvl~Di~mp~~-~Gl~ll~~i~~~~~~~--pVI~~Tg~g~--i~~AV~A~k 96 (464)
T COG2204 48 --------------------------PFDLVLLDIRMPGM-DGLELLKEIKSRDPDL--PVIVMTGHGD--IDTAVEALR 96 (464)
T ss_pred --------------------------CCCEEEEecCCCCC-chHHHHHHHHhhCCCC--CEEEEeCCCC--HHHHHHHHh
Confidence 13445555544322 3334445554444333 3444333321 111224566
Q ss_pred CccccccccCCCcchHHHHHhhcc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
.|+-.++.||+...+|...++...
T Consensus 97 ~GA~Dfl~KP~~~~~L~~~v~ral 120 (464)
T COG2204 97 LGAFDFLEKPFDLDRLLAIVERAL 120 (464)
T ss_pred cCcceeeeCCCCHHHHHHHHHHHH
Confidence 788899999999999998887543
No 189
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=61.18 E-value=7.7 Score=49.53 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=28.5
Q ss_pred EEEEEeCCCCCCcccHh--------hhccccccc---c-ccCCCCCCCccccHHHHHHHHHhc
Q 001330 591 EFEVDDTGKGIPKDKQN--------SIFEEFVQV---K-ETALGHQEGLGLGLGIVQSMVHLM 641 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~--------~IFe~F~q~---d-~s~~~~~~GtGLGLaIvk~lVe~~ 641 (1099)
.|+|.|+|.|||.+..+ -+|-...-. + ..-.-..|=.|.|++.|-.+-+.+
T Consensus 70 sIsV~DnGrGIPvd~h~~~g~~~~Elvlt~lhAggKfd~~~ykvSgGlhGvG~svvNAlS~~l 132 (756)
T PRK14939 70 SVSVSDNGRGIPTDIHPEEGVSAAEVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVVNALSEWL 132 (756)
T ss_pred eEEEEEcCCcccCCcccccCCchhhheeeeecccCCCCCCcccccCCccCccceEeehccCeE
Confidence 48999999999998332 233211100 0 011111233689998877766644
No 190
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=60.91 E-value=1.2e+02 Score=32.05 Aligned_cols=90 Identities=21% Similarity=0.200 Sum_probs=59.0
Q ss_pred cCCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC--------CHHHHHHHHhccccccCCCccEEEE
Q 001330 985 LGAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM--------NGWEATRLIRKEEEQYDVHIPIIAL 1055 (1099)
Q Consensus 985 ~G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m--------dG~e~~r~IR~~~~~~~~~ipIIal 1055 (1099)
.|..+ ..+.+..++.+... ..+|+|...--.|.. .|++.++++++.. .++||++.
T Consensus 103 ~~~~~g~~~~t~~e~~~a~~------------~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~v~a~ 166 (212)
T PRK00043 103 PDAIIGLSTHTLEEAAAALA------------AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV----GDIPIVAI 166 (212)
T ss_pred CCCEEEEeCCCHHHHHHHhH------------cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc----CCCCEEEE
Confidence 34433 33456667665542 358999887655543 3688899888642 23899888
Q ss_pred eccCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHH
Q 001330 1056 TAHAMAGVASKIVDAGMDFHLT-----KPLQKDKLLDVVKS 1091 (1099)
Q Consensus 1056 Ta~~~~~~~~~~l~aG~ddyL~-----KPi~~~~L~~~l~~ 1091 (1099)
.+- ..+...+++++|++++.. +.-++.+....+.+
T Consensus 167 GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~ 206 (212)
T PRK00043 167 GGI-TPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLA 206 (212)
T ss_pred CCc-CHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHH
Confidence 776 578888999999999863 54455554444443
No 191
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=59.98 E-value=11 Score=45.60 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=24.8
Q ss_pred EEEEEeCCCCCCcccHhhhccccccccc
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKE 618 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~ 618 (1099)
.+.|.|+|.||-.++++-+-|||...+-
T Consensus 58 LlQisDnG~GI~reDl~ilCeRftTSKL 85 (694)
T KOG1979|consen 58 LLQISDNGSGIRREDLPILCERFTTSKL 85 (694)
T ss_pred EEEEecCCCccchhhhHHHHHHhhhhhc
Confidence 4678999999999999999999987653
No 192
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=58.96 E-value=12 Score=45.97 Aligned_cols=57 Identities=26% Similarity=0.370 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEE
Q 001330 513 KLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEF 592 (1099)
Q Consensus 513 rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 592 (1099)
-|.|++.-|+-|++... .-.|.|++.+ ..+.+
T Consensus 21 sla~~VeElv~NSiDA~-At~V~v~V~~-----------------------------------------------~t~sv 52 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDAE-ATCVAVRVNM-----------------------------------------------ETFSV 52 (1142)
T ss_pred HHHHHHHHHHhhccccC-ceEEEEEecC-----------------------------------------------ceeEE
Confidence 47899999999999873 2345554422 14678
Q ss_pred EEEeCCCCCCcccHhhhcccccccc
Q 001330 593 EVDDTGKGIPKDKQNSIFEEFVQVK 617 (1099)
Q Consensus 593 ~V~DtG~GI~~e~l~~IFe~F~q~d 617 (1099)
.|.|+|.|+..+++..+-++||..+
T Consensus 53 ~ViDdG~G~~rdDl~~lg~ry~TSK 77 (1142)
T KOG1977|consen 53 QVIDDGFGMGRDDLEKLGNRYFTSK 77 (1142)
T ss_pred EEEecCCCccHHHHHHHHhhhhhhh
Confidence 9999999999999999999998754
No 193
>PLN03237 DNA topoisomerase 2; Provisional
Probab=58.55 E-value=16 Score=49.60 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=33.0
Q ss_pred EEEEEeCCCCCCcccHh--------hhcccccccc---cc-CCCCCCCccccHHHHHHHHHhcCCEE
Q 001330 591 EFEVDDTGKGIPKDKQN--------SIFEEFVQVK---ET-ALGHQEGLGLGLGIVQSMVHLMKGEI 645 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~--------~IFe~F~q~d---~s-~~~~~~GtGLGLaIvk~lVe~~gG~I 645 (1099)
.|+|.|+|.|||-+..+ -||....... .. ..-.+|=.|.|.+.|.-+-+.+--++
T Consensus 112 sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~Vev 178 (1465)
T PLN03237 112 LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIET 178 (1465)
T ss_pred EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEEEE
Confidence 38999999999976432 2443332211 11 11112337999998887777765555
No 194
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=57.46 E-value=61 Score=36.40 Aligned_cols=124 Identities=18% Similarity=0.105 Sum_probs=75.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEE------CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHH
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVC------RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATR 1037 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a------~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r 1037 (1099)
+++++-|-...-+.++.. +.|+..... .|..||+..+....+..+.... ...|=-|+...-...-|+++++
T Consensus 114 ~vpfmad~~~l~EAlrai--~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~elLk 190 (287)
T TIGR00343 114 KVPFVCGARDLGEALRRI--NEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQN-MLEEEDLAAVAKELRVPVELLL 190 (287)
T ss_pred CCCEEccCCCHHHHHHHH--HCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhc-ccchhHHhhhhcccCCCHHHHH
Confidence 577777777777776665 458766532 3556887777543222211100 0000000000000126889999
Q ss_pred HHhccccccCCCccEE--EEeccCCHHHHHHHHHcCCCEE-----EeCCCCHHHHHHHHHHHHHH
Q 001330 1038 LIRKEEEQYDVHIPII--ALTAHAMAGVASKIVDAGMDFH-----LTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1038 ~IR~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~ddy-----L~KPi~~~~L~~~l~~i~~~ 1095 (1099)
++++. ..+||| +..+-.++++...+++.|++++ |.|.-++.+....+...+..
T Consensus 191 ei~~~-----~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 191 EVLKL-----GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred HHHHh-----CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 99863 258998 7888889999999999999997 55666777766666555443
No 195
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=55.96 E-value=31 Score=34.80 Aligned_cols=55 Identities=27% Similarity=0.356 Sum_probs=46.2
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEEC----CHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC
Q 001330 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCR----NGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV 1029 (1099)
Q Consensus 959 ~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~----~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1029 (1099)
++.|++|+|+.......+-+..+|.+.|+.|..+. |.+++++ ..|+|+.-..-|.
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~----------------~ADIVvsAtg~~~ 83 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH----------------DADVVVVGSPKPE 83 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh----------------hCCEEEEecCCCC
Confidence 56789999999999999999999999999999997 5555432 4699999887764
No 196
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.29 E-value=81 Score=29.38 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=53.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEE--CCHHHHH-HHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVC--RNGKEAF-DHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a--~~g~eAl-~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
+||||-..+.....++..+++.|++.... .++.+-- ..+.. .-...|+|++=.+ .-+-.++..++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~---------~i~~aD~VIv~t~---~vsH~~~~~vk 68 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPS---------KIKKADLVIVFTD---YVSHNAMWKVK 68 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHH---------hcCCCCEEEEEeC---CcChHHHHHHH
Confidence 48999998888899999999999998777 2222211 12211 1235798877443 34455566665
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIV 1068 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l 1068 (1099)
+.-.. .++|++..-... .....+++
T Consensus 69 ~~akk--~~ip~~~~~~~~-~~~l~~~l 93 (97)
T PF10087_consen 69 KAAKK--YGIPIIYSRSRG-VSSLERAL 93 (97)
T ss_pred HHHHH--cCCcEEEECCCC-HHHHHHHH
Confidence 54333 358888765433 33334443
No 197
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=53.73 E-value=43 Score=37.73 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=54.9
Q ss_pred EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHH
Q 001330 989 FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV 1068 (1099)
Q Consensus 989 v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l 1068 (1099)
.+.+.+-+||.+.+. ..+|+|++| +|+..+=.++.+.+|+.. ++ .++..++.-..+......
T Consensus 192 eVEv~tleea~ea~~------------~GaDiI~lD-n~~~e~l~~~v~~l~~~~----~~-~~leasGGI~~~ni~~ya 253 (277)
T TIGR01334 192 TVEADTIEQALTVLQ------------ASPDILQLD-KFTPQQLHHLHERLKFFD----HI-PTLAAAGGINPENIADYI 253 (277)
T ss_pred EEECCCHHHHHHHHH------------cCcCEEEEC-CCCHHHHHHHHHHHhccC----CC-EEEEEECCCCHHHHHHHH
Confidence 345689999988874 258999999 466555566666665321 22 367889999999999999
Q ss_pred HcCCCEE------EeCCCCH
Q 001330 1069 DAGMDFH------LTKPLQK 1082 (1099)
Q Consensus 1069 ~aG~ddy------L~KPi~~ 1082 (1099)
+.|+|-+ -.||.+.
T Consensus 254 ~~GvD~is~gal~~a~~~Di 273 (277)
T TIGR01334 254 EAGIDLFITSAPYYAAPCDI 273 (277)
T ss_pred hcCCCEEEeCcceecCccce
Confidence 9999974 4566653
No 198
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=53.34 E-value=45 Score=35.16 Aligned_cols=68 Identities=25% Similarity=0.341 Sum_probs=46.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCe---EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH---HHHH
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAK---FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG---WEAT 1036 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~---v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG---~e~~ 1036 (1099)
.+|..||-++.....+++-++..|.. .....|...++..... ....||+|++|- |-..+ .+++
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---------~~~~fDiIflDP--PY~~~~~~~~~l 134 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---------KGEKFDIIFLDP--PYAKGLYYEELL 134 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH---------CTS-EEEEEE----STTSCHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc---------cCCCceEEEECC--CcccchHHHHHH
Confidence 57999999999999999999998853 3456777777765532 245899999995 54444 3466
Q ss_pred HHHhc
Q 001330 1037 RLIRK 1041 (1099)
Q Consensus 1037 r~IR~ 1041 (1099)
..|.+
T Consensus 135 ~~l~~ 139 (183)
T PF03602_consen 135 ELLAE 139 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 199
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=51.95 E-value=42 Score=37.45 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=40.7
Q ss_pred CHHHHHHHHhccccccCCCccEEEEecc------CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 001330 1031 NGWEATRLIRKEEEQYDVHIPIIALTAH------AMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1031 dG~e~~r~IR~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i 1092 (1099)
+.+++++++|+. ...+|+|+||=. .......+|.++|+|+.|.-.+.+++..+.+...
T Consensus 75 ~~~~~~~~~r~~----~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 75 DVFELVREIREK----DPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHHhc----CCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 457777888842 235788888743 3445678888999999998778887776666554
No 200
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.48 E-value=3e+02 Score=28.50 Aligned_cols=182 Identities=12% Similarity=0.159 Sum_probs=105.4
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHHHHH
Q 001330 398 LAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEV 477 (1099)
Q Consensus 398 la~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll~~v 477 (1099)
-+.+-||+=.|..+|..-+|+|.+.... .+.++.|+.++..+. +.|.|+|+--|----.-..||-.+.- .+
T Consensus 19 csRvCHDiISPvgAInnGLeLLdeg~ad----dDAm~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgeae-k~ 89 (214)
T COG5385 19 CSRVCHDIISPVGAINNGLELLDEGGAD----DDAMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEAE-KA 89 (214)
T ss_pred HHHHHhhccCcHHHhhchhhhhccCCcc----HHHHHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhHH-HH
Confidence 3556799999999999999999664332 577889999887754 56789998765543334556665543 33
Q ss_pred HHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCe-EEEEEEEeccccchhhhhccccc
Q 001330 478 VDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGH-ISVRAAVKKKSFKQDIIASNRNV 556 (1099)
Q Consensus 478 ~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~-I~v~~~~~~~~~~~~~~~~~~~~ 556 (1099)
...|. +.+| -++.++.+.. .....+. ..|.||+-=|.-.-|.|+ +.+++ +...
T Consensus 90 A~~~~--a~ek-pe~~W~g~r~--------~~~Kn~v-kllLNl~lia~~aiPrGG~~~vtl--e~~e------------ 143 (214)
T COG5385 90 AQDFF--ANEK-PELTWNGPRA--------ILPKNRV-KLLLNLFLIAYGAIPRGGSLVVTL--ENPE------------ 143 (214)
T ss_pred HHHHH--hccC-CcccccCChh--------hcCcchH-HHHHHHHHHHcccCCCCCeeEEEe--ecCC------------
Confidence 33332 1222 4444443221 1122332 468888877776677776 33332 2111
Q ss_pred hhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCC--CCCcccHhhhccccccccccCCCCCCCccccHHHH
Q 001330 557 ISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGK--GIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIV 634 (1099)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~--GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIv 634 (1099)
. .-+|++.-.|+ -.|++.++-+- ..+- ...-++.-.-=+..
T Consensus 144 -----------------------------~--d~rfsi~akG~m~Rvppk~lel~~-----G~~~-eE~vdahsVQpyYt 186 (214)
T COG5385 144 -----------------------------T--DARFSIIAKGRMMRVPPKFLELHS-----GEPP-EEAVDAHSVQPYYT 186 (214)
T ss_pred -----------------------------c--CceEEEEecCccccCCHHHHhhhc-----CCCc-cccCCCccccHHHH
Confidence 0 12355554554 45666554321 1100 00113445556777
Q ss_pred HHHHHhcCCEEEEEecC
Q 001330 635 QSMVHLMKGEIAIADKE 651 (1099)
Q Consensus 635 k~lVe~~gG~I~v~s~~ 651 (1099)
--|++.-|++|.|+...
T Consensus 187 ~lLa~eAgm~I~v~~~~ 203 (214)
T COG5385 187 LLLAEEAGMTISVHATA 203 (214)
T ss_pred HHHHHHcCCeEEEEecc
Confidence 78999999999997543
No 201
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=50.56 E-value=2.2e+02 Score=31.64 Aligned_cols=104 Identities=17% Similarity=0.119 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhhcCCeEEEE--CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHH-----HHHHHHhcccc
Q 001330 972 AIVLKVTSAVLGKLGAKFEVC--RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGW-----EATRLIRKEEE 1044 (1099)
Q Consensus 972 ~~~~~~l~~~L~~~G~~v~~a--~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~-----e~~r~IR~~~~ 1044 (1099)
....+. .+.|-+.||.|... .|..-|-++. +. =-..+|=+--|..+|. ..++.|++.
T Consensus 124 ~etl~A-ae~Lv~eGF~VlPY~~~D~v~a~rLe-d~------------Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~-- 187 (267)
T CHL00162 124 IGTLKA-AEFLVKKGFTVLPYINADPMLAKHLE-DI------------GCATVMPLGSPIGSGQGLQNLLNLQIIIEN-- 187 (267)
T ss_pred HHHHHH-HHHHHHCCCEEeecCCCCHHHHHHHH-Hc------------CCeEEeeccCcccCCCCCCCHHHHHHHHHc--
Confidence 334444 44555779998643 4444443332 10 1246777777876653 467778763
Q ss_pred ccCCCccEEEEeccCCHHHHHHHHHcCCCEE-----EeCCCCHHHHHHHHHHHHH
Q 001330 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFH-----LTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1045 ~~~~~ipIIalTa~~~~~~~~~~l~aG~ddy-----L~KPi~~~~L~~~l~~i~~ 1094 (1099)
..+|||+=.+-...++..++++.|+|+. |.|--++.++...++...+
T Consensus 188 ---~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~ 239 (267)
T CHL00162 188 ---AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQ 239 (267)
T ss_pred ---CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHH
Confidence 3589999899999999999999999997 5577888888877766544
No 202
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=50.17 E-value=56 Score=43.39 Aligned_cols=119 Identities=15% Similarity=0.241 Sum_probs=74.9
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
+.+++++++++..+..+...+.. .|..+..+.+.......+..
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l~~------------------------------------ 744 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTR-LGHKVTLAESGQSALECFHQ------------------------------------ 744 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHH-cCCEEEEECCHHHHHHHHHC------------------------------------
Confidence 34788999999999999999987 89998888777654433221
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCc-ceEEEeccchhccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLS-CKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 866 (1099)
..+.++++|...+.. +.....+.++...+... ++++.+...... ......
T Consensus 745 --------------------------~~~dlvl~D~~mp~~-~g~~~~~~ir~~~~~~~~~pii~lta~~~~--~~~~~~ 795 (968)
T TIGR02956 745 --------------------------HAFDLALLDINLPDG-DGVTLLQQLRAIYGAKNEVKFIAFSAHVFN--EDVAQY 795 (968)
T ss_pred --------------------------CCCCEEEECCCCCCC-CHHHHHHHHHhCccccCCCeEEEEECCCCH--HHHHHH
Confidence 123456666554332 23334444444333322 556655433221 222344
Q ss_pred ccCccccccccCCCcchHHHHHhhcc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
...|.+.++.||+....|.+.+..+.
T Consensus 796 ~~~G~~~~l~KP~~~~~L~~~l~~~~ 821 (968)
T TIGR02956 796 LAAGFDGFLAKPVVEEQLTAMIAVIL 821 (968)
T ss_pred HHCCCCEEEeCCCCHHHHHHHHHHHh
Confidence 56788999999999999999887643
No 203
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=50.12 E-value=1.6e+02 Score=32.40 Aligned_cols=98 Identities=17% Similarity=0.119 Sum_probs=60.4
Q ss_pred HHHHHHhhcCCeEEE--ECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHH-----HHHHHHhccccccCCC
Q 001330 977 VTSAVLGKLGAKFEV--CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGW-----EATRLIRKEEEQYDVH 1049 (1099)
Q Consensus 977 ~l~~~L~~~G~~v~~--a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~-----e~~r~IR~~~~~~~~~ 1049 (1099)
...+.|-+.||.|.- ..|..-|-++. +. . -..+|=+--|..+|. ..++.|++. ..
T Consensus 114 ~Aae~Lv~eGF~VlPY~~~D~v~akrL~-d~-----------G-caavMPlgsPIGSg~Gi~n~~~l~~i~~~-----~~ 175 (247)
T PF05690_consen 114 KAAEILVKEGFVVLPYCTDDPVLAKRLE-DA-----------G-CAAVMPLGSPIGSGRGIQNPYNLRIIIER-----AD 175 (247)
T ss_dssp HHHHHHHHTT-EEEEEE-S-HHHHHHHH-HT-----------T--SEBEEBSSSTTT---SSTHHHHHHHHHH-----GS
T ss_pred HHHHHHHHCCCEEeecCCCCHHHHHHHH-HC-----------C-CCEEEecccccccCcCCCCHHHHHHHHHh-----cC
Confidence 345566678999864 34444443332 11 1 236788888877764 567788754 25
Q ss_pred ccEEEEeccCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHH
Q 001330 1050 IPIIALTAHAMAGVASKIVDAGMDFHLT-----KPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1050 ipIIalTa~~~~~~~~~~l~aG~ddyL~-----KPi~~~~L~~~l~~i 1092 (1099)
+|+|+=.+-..+.+...+++.|+|+.|. |--++-.+.++.+..
T Consensus 176 vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~A 223 (247)
T PF05690_consen 176 VPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLA 223 (247)
T ss_dssp SSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHH
Confidence 8999999999999999999999999975 455666666665544
No 204
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=49.10 E-value=16 Score=45.64 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=31.4
Q ss_pred EEEEEeCCCCCCcccHh-----------hhccccccc---cccCCCCCCCccccHHHHHHHHHhcC
Q 001330 591 EFEVDDTGKGIPKDKQN-----------SIFEEFVQV---KETALGHQEGLGLGLGIVQSMVHLMK 642 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~-----------~IFe~F~q~---d~s~~~~~~GtGLGLaIvk~lVe~~g 642 (1099)
.++|.|+|.|||-+..+ -||.-.... +.+-.-.+|-.|.|.+.|.-+-+.+-
T Consensus 80 sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~~ 145 (602)
T PHA02569 80 QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLFI 145 (602)
T ss_pred EEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhhh
Confidence 38999999999986542 123211111 11111123458999999888777765
No 205
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=48.84 E-value=1.7e+02 Score=31.63 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=54.1
Q ss_pred HHHhh-cCCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC-------CCCCCHHHHHHHHhccccccCCCc
Q 001330 980 AVLGK-LGAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE-------MPVMNGWEATRLIRKEEEQYDVHI 1050 (1099)
Q Consensus 980 ~~L~~-~G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~-------MP~mdG~e~~r~IR~~~~~~~~~i 1050 (1099)
...++ .|..+ ..+.+.+++..... ..+|+|..... .+...++++++++|+. ..+
T Consensus 112 ~~~~~~~~i~vi~~v~t~ee~~~a~~------------~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~-----~~i 174 (221)
T PRK01130 112 KRIKEYPGQLLMADCSTLEEGLAAQK------------LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA-----VGC 174 (221)
T ss_pred HHHHhCCCCeEEEeCCCHHHHHHHHH------------cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh-----CCC
Confidence 33444 56554 34567777754432 25787755321 1223457888999863 258
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1051 PIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1051 pIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
|+++..+-.+.++..++++.|+|.++.
T Consensus 175 Pvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 175 PVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 999988888899999999999999754
No 206
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=47.94 E-value=1.2e+02 Score=34.27 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=69.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEE------CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHH
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVC------RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATR 1037 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a------~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r 1037 (1099)
.+|++-|=...-+.++.. +.|+++... .+-.||+..+.......+.-..-.+..+ + +..-....|+++++
T Consensus 112 ~~l~MAD~stleEal~a~--~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~-~-~~~~~~~~d~elLk 187 (283)
T cd04727 112 KVPFVCGARNLGEALRRI--SEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEEL-Y-AVAKEIQAPYELVK 187 (283)
T ss_pred CCcEEccCCCHHHHHHHH--HCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHH-H-hhhcccCCCHHHHH
Confidence 456666665555555443 467765532 3445666666543222221110000010 0 00001235789999
Q ss_pred HHhccccccCCCccEE--EEeccCCHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHHHH
Q 001330 1038 LIRKEEEQYDVHIPII--ALTAHAMAGVASKIVDAGMDFHL-----TKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1038 ~IR~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~ddyL-----~KPi~~~~L~~~l~~i~~ 1094 (1099)
++++. ..+||| +..+-..+++..++++.|+++++ .+.-++.+....+...+.
T Consensus 188 ~l~~~-----~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~ 246 (283)
T cd04727 188 ETAKL-----GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVT 246 (283)
T ss_pred HHHHh-----cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 99863 248997 78877799999999999999974 444456655555554443
No 207
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=47.02 E-value=17 Score=45.01 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=14.9
Q ss_pred EEEEEeCCCCCCcccHh
Q 001330 591 EFEVDDTGKGIPKDKQN 607 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~ 607 (1099)
.++|.|||+||.++++.
T Consensus 75 TLtI~DNGIGMT~~Ev~ 91 (623)
T COG0326 75 TLTISDNGIGMTKDEVI 91 (623)
T ss_pred EEEEEeCCCCCCHHHHH
Confidence 58999999999998854
No 208
>PLN02591 tryptophan synthase
Probab=46.37 E-value=59 Score=36.11 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=42.3
Q ss_pred CHHHHHHHHhccccccCCCccEEEEeccC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 001330 1031 NGWEATRLIRKEEEQYDVHIPIIALTAHA------MAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1031 dG~e~~r~IR~~~~~~~~~ipIIalTa~~------~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i 1092 (1099)
+.+++++++|+. .++|+|+||=.+ ......+|.++|+|+.|.-.+..++..+.....
T Consensus 65 ~~~~~~~~~r~~-----~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~ 127 (250)
T PLN02591 65 SVISMLKEVAPQ-----LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEA 127 (250)
T ss_pred HHHHHHHHHhcC-----CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 457778888842 357888887543 345578889999999999888888887776654
No 209
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=46.29 E-value=62 Score=36.04 Aligned_cols=56 Identities=25% Similarity=0.296 Sum_probs=27.1
Q ss_pred HHHHHHHHhccccccCCCccEEEEeccCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 001330 1032 GWEATRLIRKEEEQYDVHIPIIALTAHAM------AGVASKIVDAGMDFHLTKPLQKDKLLDVVKS 1091 (1099)
Q Consensus 1032 G~e~~r~IR~~~~~~~~~ipIIalTa~~~------~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~ 1091 (1099)
.++.++++|+.. ..+|++.|+-... .....+|.++|+++.+.-....++..+.+..
T Consensus 74 ~~~~v~~ir~~~----~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~ 135 (256)
T TIGR00262 74 CFELLKKVRQKH----PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEA 135 (256)
T ss_pred HHHHHHHHHhcC----CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHH
Confidence 345555555321 1345555544332 3445555566666655555555554444433
No 210
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=46.27 E-value=4.1e+02 Score=29.59 Aligned_cols=100 Identities=14% Similarity=0.042 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhhcCCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEec---CCCCCCHHHHHHHHhccccccC
Q 001330 972 AIVLKVTSAVLGKLGAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC---EMPVMNGWEATRLIRKEEEQYD 1047 (1099)
Q Consensus 972 ~~~~~~l~~~L~~~G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi---~MP~mdG~e~~r~IR~~~~~~~ 1047 (1099)
+...+.+.......|.++ ..+.|.+|+..... ..+|+|-..- ..-..| ++.+.++...-+
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~------------~gadiIgin~rdl~~~~~d-~~~~~~l~~~~p--- 209 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHDEEELERALK------------LGAPLIGINNRNLKTFEVD-LETTERLAPLIP--- 209 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH------------cCCCEEEECCCCcccccCC-HHHHHHHHHhCC---
Confidence 334444444556678775 45778888755442 2467665431 111223 666677765321
Q ss_pred CCccEEEEeccCCHHHHHHHHHcCCCEE-----EeCCCCHHHHHH
Q 001330 1048 VHIPIIALTAHAMAGVASKIVDAGMDFH-----LTKPLQKDKLLD 1087 (1099)
Q Consensus 1048 ~~ipIIalTa~~~~~~~~~~l~aG~ddy-----L~KPi~~~~L~~ 1087 (1099)
...|+|+.++-.+.++..++.++|+|++ |+||-++.+...
T Consensus 210 ~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~ 254 (260)
T PRK00278 210 SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAALR 254 (260)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHH
Confidence 1358999999999999999999999997 556666554443
No 211
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=46.26 E-value=21 Score=44.28 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=22.2
Q ss_pred EEEEEeCCCCCCcccHhhhcccccccc
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEEFVQVK 617 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~F~q~d 617 (1099)
.|+|.|+|.||++.+.+-+-..++..+
T Consensus 51 ~IEV~DNG~GI~~~n~~~l~lkh~TSK 77 (672)
T KOG1978|consen 51 SIEVSDNGSGISATDFEGLALKHTTSK 77 (672)
T ss_pred eEEEecCCCCCCccchhhhhhhhhhhc
Confidence 489999999999999888777766543
No 212
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=46.07 E-value=5.3e+02 Score=29.84 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=25.0
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEE-Eecchh
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVT-IVKQEK 743 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~-~~~~~~ 743 (1099)
.+++++.+++..+..+...+....++.+. .+.+..
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~ 39 (354)
T PRK00742 4 IRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGL 39 (354)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHH
Confidence 36788888888888898888774466665 455544
No 213
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=45.89 E-value=49 Score=39.99 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=70.0
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
+|+++++....|+.|+..+.. .-....++....+..++++.++.
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w-~~~g~eiVgtA~NG~eAleli~e----------------------------------- 46 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDW-EALGIEVVGTAANGKEALELIQE----------------------------------- 46 (475)
T ss_pred eEEEecChHHHHHHHHHhCCh-hhcCCeEEEecccHHHHHHHHHh-----------------------------------
Confidence 477788888889999888865 22333444444444455554421
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
....++++|...+. .+..+.++..+...|+..+.++. .-.+. +-...+..-
T Consensus 47 ------------------------~~pDiviTDI~MP~-mdGLdLI~~ike~~p~~~~IILS-Gy~eF---eYak~Am~l 97 (475)
T COG4753 47 ------------------------TQPDIVITDINMPG-MDGLDLIKAIKEQSPDTEFIILS-GYDEF---EYAKKAMKL 97 (475)
T ss_pred ------------------------cCCCEEEEecCCCC-CcHHHHHHHHHHhCCCceEEEEe-ccchh---HHHHHHHhc
Confidence 11345666665433 34445555555555554443332 11111 222356678
Q ss_pred ccccccccCCCcchHHHHHhhcc
Q 001330 870 ICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
|....+.||+...+|...|..+.
T Consensus 98 GV~dYLLKP~~k~eL~~~L~ki~ 120 (475)
T COG4753 98 GVKDYLLKPVDKAELEEALKKII 120 (475)
T ss_pred CchhheeCcCCHHHHHHHHHHHH
Confidence 88999999999999999997654
No 214
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=45.65 E-value=1.9e+02 Score=31.27 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=43.1
Q ss_pred Ccc-EEEEecCCCCC-CH--HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1017 PYD-YIMMDCEMPVM-NG--WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1017 ~~D-lIlmDi~MP~m-dG--~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
.+| ++++|+.--++ .| +++++++++. ..+|+++-.+-.+.++..++++.|+++++.
T Consensus 158 g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-----~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 158 GLEGIIYTDISRDGTLSGPNFELTKELVKA-----VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CCCEEEEEeecCCCCcCCCCHHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 456 77788864332 22 6888888763 358999999999999999999999999874
No 215
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.24 E-value=2.3e+02 Score=33.93 Aligned_cols=108 Identities=15% Similarity=0.118 Sum_probs=58.6
Q ss_pred CCEEEEEeCCHH---HHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH--HHHH
Q 001330 962 GKKFLVVEDDAI---VLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG--WEAT 1036 (1099)
Q Consensus 962 ~~~ILvVdDd~~---~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG--~e~~ 1036 (1099)
+++|++++-|+. ..+.++..-+..|+.+..+.+..+..+.+... . ....+|+||+|. |+.+- .+.+
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~l----k---~~~~~DvVLIDT--aGRs~kd~~lm 339 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYF----K---EEARVDYILIDT--AGKNYRASETV 339 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHH----H---hccCCCEEEEeC--ccccCcCHHHH
Confidence 568888888764 23344445456788888787776655444321 1 112589999996 33322 3344
Q ss_pred HHHhccccccCCCccEEEEeccCCHHHHHHH----HHcCCCEEEeC
Q 001330 1037 RLIRKEEEQYDVHIPIIALTAHAMAGVASKI----VDAGMDFHLTK 1078 (1099)
Q Consensus 1037 r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~----l~aG~ddyL~K 1078 (1099)
+++++.-....++-.++++++.....+.... -..|.+.+|.=
T Consensus 340 ~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~T 385 (436)
T PRK11889 340 EEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFT 385 (436)
T ss_pred HHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEE
Confidence 4444332222233335567665444442222 24578877543
No 216
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=45.22 E-value=1.9e+02 Score=27.43 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHH
Q 001330 1058 HAMAGVASKIVDAGMDFHLTKPL--QKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1058 ~~~~~~~~~~l~aG~ddyL~KPi--~~~~L~~~l~~i~~~ 1095 (1099)
....+...+|+++|.+-|+-||+ +.+++.+.++...++
T Consensus 73 ~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 73 SSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp GGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 44567888999999999999998 788888877766443
No 217
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=44.83 E-value=2.5e+02 Score=30.19 Aligned_cols=79 Identities=20% Similarity=0.182 Sum_probs=52.8
Q ss_pred HhhcC-CeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC-------CCCCCHHHHHHHHhccccccCCCccE
Q 001330 982 LGKLG-AKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE-------MPVMNGWEATRLIRKEEEQYDVHIPI 1052 (1099)
Q Consensus 982 L~~~G-~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~-------MP~mdG~e~~r~IR~~~~~~~~~ipI 1052 (1099)
+.+.| ..+ ..+.+.+++..... ..+|+|..... .+...+++.++++|+. .++||
T Consensus 118 ~~~~g~~~iiv~v~t~~ea~~a~~------------~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~-----~~ipv 180 (219)
T cd04729 118 IHEEYNCLLMADISTLEEALNAAK------------LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA-----LGIPV 180 (219)
T ss_pred HHHHhCCeEEEECCCHHHHHHHHH------------cCCCEEEccCccccccccCCCCCCHHHHHHHHHh-----cCCCE
Confidence 34445 443 34567777755442 25787754211 1223457889999863 25899
Q ss_pred EEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1053 IALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1053 IalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
++..+-.+.++..++++.|+|.++.
T Consensus 181 ia~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 181 IAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred EEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 9988888899999999999999865
No 218
>PRK14974 cell division protein FtsY; Provisional
Probab=44.59 E-value=1.9e+02 Score=33.72 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=55.0
Q ss_pred CCEEEEEeCCH---HHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC--HHHHH
Q 001330 962 GKKFLVVEDDA---IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN--GWEAT 1036 (1099)
Q Consensus 962 ~~~ILvVdDd~---~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md--G~e~~ 1036 (1099)
+.+|++++.|. ...+.++......|..+.....+.+..+.+.+.++.. ....+|+||+|-- +.. -.+++
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~----~~~~~DvVLIDTa--Gr~~~~~~lm 241 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA----KARGIDVVLIDTA--GRMHTDANLM 241 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH----HhCCCCEEEEECC--CccCCcHHHH
Confidence 45788888773 3334455556667877765544432221111111111 1236899999974 332 33455
Q ss_pred HHHhccccccCCCccEEEEeccCCHHHHH--HHH--HcCCCEEEe
Q 001330 1037 RLIRKEEEQYDVHIPIIALTAHAMAGVAS--KIV--DAGMDFHLT 1077 (1099)
Q Consensus 1037 r~IR~~~~~~~~~ipIIalTa~~~~~~~~--~~l--~aG~ddyL~ 1077 (1099)
.++++......++.-++++.+....+... +.+ ..|.++.|.
T Consensus 242 ~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIl 286 (336)
T PRK14974 242 DELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL 286 (336)
T ss_pred HHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEE
Confidence 55554322223444456666544433332 222 368888654
No 219
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=44.49 E-value=1.5e+02 Score=31.68 Aligned_cols=98 Identities=10% Similarity=-0.021 Sum_probs=62.0
Q ss_pred EEEEE----eCCHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC-CH-HH
Q 001330 964 KFLVV----EDDAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM-NG-WE 1034 (1099)
Q Consensus 964 ~ILvV----dDd~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m-dG-~e 1034 (1099)
+|++. |.+..=..++..+|+..||+|... ...++.++.+. ...||+|.+-+.|+.. .. .+
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~-----------~~~pd~v~lS~~~~~~~~~~~~ 154 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK-----------KEKPLMLTGSALMTTTMYGQKD 154 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-----------HcCCCEEEEccccccCHHHHHH
Confidence 55544 445566778888999999999864 34455555553 2479999999988643 22 35
Q ss_pred HHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1035 ATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1035 ~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
+++.+|+... ..+++ |++.+...... -+.+.|+|.|-.
T Consensus 155 ~i~~l~~~~~--~~~v~-i~vGG~~~~~~--~~~~~gad~~~~ 192 (197)
T TIGR02370 155 INDKLKEEGY--RDSVK-FMVGGAPVTQD--WADKIGADVYGE 192 (197)
T ss_pred HHHHHHHcCC--CCCCE-EEEEChhcCHH--HHHHhCCcEEeC
Confidence 5667775421 12345 44555554332 466789999854
No 220
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=44.47 E-value=2.4e+02 Score=26.52 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=56.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCH-HHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNG-KEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g-~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
.+|.++|.|+...+.+ ...|+.+....-. .+.++.+ .-...+.+++...-. ..-..++..+|+
T Consensus 22 ~~vvvid~d~~~~~~~----~~~~~~~i~gd~~~~~~l~~a-----------~i~~a~~vv~~~~~d-~~n~~~~~~~r~ 85 (116)
T PF02254_consen 22 IDVVVIDRDPERVEEL----REEGVEVIYGDATDPEVLERA-----------GIEKADAVVILTDDD-EENLLIALLARE 85 (116)
T ss_dssp SEEEEEESSHHHHHHH----HHTTSEEEES-TTSHHHHHHT-----------TGGCESEEEEESSSH-HHHHHHHHHHHH
T ss_pred CEEEEEECCcHHHHHH----HhcccccccccchhhhHHhhc-----------CccccCEEEEccCCH-HHHHHHHHHHHH
Confidence 4789999998775433 4456666554322 2223222 223678888876532 445667778876
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
.. +..+||+... +.+......++|+|..+.
T Consensus 86 ~~----~~~~ii~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 86 LN----PDIRIIARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp HT----TTSEEEEEES--SHHHHHHHHHTT-SEEEE
T ss_pred HC----CCCeEEEEEC--CHHHHHHHHHCCcCEEEC
Confidence 43 3467776663 456667778899998764
No 221
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=44.11 E-value=2.8e+02 Score=30.02 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=56.2
Q ss_pred HHHhhcCC-eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEecc
Q 001330 980 AVLGKLGA-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAH 1058 (1099)
Q Consensus 980 ~~L~~~G~-~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~ 1058 (1099)
..|.+.+. -|....+.++|++..+... ...+++| .+.|-.-+++++++.+|+..+ ++ +|..-.-
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~--------~~Gi~~i--Eitl~~~~~~~~I~~l~~~~p----~~-~IGAGTV 74 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALV--------AGGLPVL--EVTLRTPAALEAIRLIAKEVP----EA-LIGAGTV 74 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHH--------HcCCCEE--EEecCCccHHHHHHHHHHHCC----CC-EEEEeec
Confidence 44555553 4556678888887775431 1235544 333444579999999986432 32 3333333
Q ss_pred CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 001330 1059 AMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090 (1099)
Q Consensus 1059 ~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~ 1090 (1099)
.+.++...++++|++- ++-|..-.++.+..+
T Consensus 75 l~~~~a~~a~~aGA~F-ivsP~~~~~vi~~a~ 105 (212)
T PRK05718 75 LNPEQLAQAIEAGAQF-IVSPGLTPPLLKAAQ 105 (212)
T ss_pred cCHHHHHHHHHcCCCE-EECCCCCHHHHHHHH
Confidence 4568888999999984 444544445554443
No 222
>PLN03029 type-a response regulator protein; Provisional
Probab=43.44 E-value=1.9e+02 Score=31.31 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=75.9
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
...+++++.++...+..+...+.. .|+.+..+.+.......+.... .+.. .+...
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~-~g~~v~~a~sg~~al~~l~~~~--~d~~------~p~~~---------------- 61 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKT-SSYQVTTVDSGSKALKFLGLHE--DDRS------NPDTP---------------- 61 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHH-cCceEEEECCHHHHHHHHHhcc--cccc------ccccc----------------
Confidence 345788888888999999999987 8899888887776554443210 0000 00000
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
+..........+.++++|...... .....+..++.......+.++.+...... ......
T Consensus 62 ------------------~~~~~~~~~~~~dlVllD~~mp~~-~G~e~l~~ir~~~~~~~ipvIils~~~~~--~~~~~a 120 (222)
T PLN03029 62 ------------------SVSPNSHQEVEVNLIITDYCMPGM-TGYDLLKKIKESSSLRNIPVVIMSSENVP--SRITRC 120 (222)
T ss_pred ------------------cccccccccccCCEEEEcCCCCCC-CHHHHHHHHHhccccCCCcEEEEeCCCCH--HHHHHH
Confidence 000001112335677777765443 33445555554332223445554432211 112244
Q ss_pred ccCccccccccCCCcchHHHHHh
Q 001330 867 LLPICDHVISRPFHGSRLIEVLK 889 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~ 889 (1099)
...|.+.++.||+....|..+..
T Consensus 121 l~~Ga~dyl~KP~~~~~L~~l~~ 143 (222)
T PLN03029 121 LEEGAEEFFLKPVQLSDLNRLKP 143 (222)
T ss_pred HHhCchheEECCCCHHHHHHHHH
Confidence 56788999999999888866654
No 223
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=42.93 E-value=84 Score=34.65 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=37.2
Q ss_pred CHHHHHHHHhccccccCCCccEEEEeccCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 001330 1031 NGWEATRLIRKEEEQYDVHIPIIALTAHAM------AGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1031 dG~e~~r~IR~~~~~~~~~ipIIalTa~~~------~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i 1092 (1099)
.+++.++++|+. ..+|+++|+-... .....+|.++|+++.+.-....+++...++.+
T Consensus 63 ~~~~~~~~vr~~-----~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 63 DVLELVKEIRKK-----NTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HHHHHHHHHhhc-----CCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 356677777753 1468777776432 55677788888888887555566665555544
No 224
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=42.63 E-value=5.4e+02 Score=30.18 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=19.2
Q ss_pred HHHHHhhhhhcccc--EEEEEcCCCcEEEec
Q 001330 224 VVIDLFAALDFHGG--DLHLAAADGQVIIQT 252 (1099)
Q Consensus 224 ~~~~~~~~~~~~~~--~~~~~~~~G~~v~~~ 252 (1099)
.+.+.++.+...+. .+.+.|.+|+++++.
T Consensus 74 ~~~~~l~~l~~~~~i~~i~v~d~~G~vl~~~ 104 (407)
T PRK09966 74 AATETLAALGQQGQFSTAEVRDKQQNILASW 104 (407)
T ss_pred HHHHHHHHhhcCcceeEEEEECCCCCEEEEe
Confidence 34445665533343 677999999999964
No 225
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=42.62 E-value=36 Score=35.94 Aligned_cols=78 Identities=26% Similarity=0.321 Sum_probs=52.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC--CCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE--MPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~--MP~mdG~e~~r~IR 1040 (1099)
++||+||....+---+...|+..|+++.+..|.....+.++ ...||.|++--- -|...| -....||
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~-----------~~~pd~iviSPGPG~P~d~G-~~~~~i~ 69 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIE-----------ALKPDAIVISPGPGTPKDAG-ISLELIR 69 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHh-----------hcCCCEEEEcCCCCChHHcc-hHHHHHH
Confidence 57999999999999999999999999988877743333332 236899998642 122222 1233444
Q ss_pred ccccccCCCccEEEEe
Q 001330 1041 KEEEQYDVHIPIIALT 1056 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalT 1056 (1099)
+. ..++||+.+.
T Consensus 70 ~~----~~~~PiLGVC 81 (191)
T COG0512 70 RF----AGRIPILGVC 81 (191)
T ss_pred Hh----cCCCCEEEEC
Confidence 32 1258999876
No 226
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=41.73 E-value=2.2e+02 Score=31.55 Aligned_cols=74 Identities=12% Similarity=0.169 Sum_probs=54.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEE-EeCCCCHHHHHHHHHHH
Q 001330 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH-LTKPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1016 ~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddy-L~KPi~~~~L~~~l~~i 1092 (1099)
..||.|++|++=-.+|--++...+|.... .+ ..|+|=+ ...+..++.+++++|+++. +.|--+.++..+.++..
T Consensus 32 ~g~D~v~iDlEH~~~~~~~~~~~~~a~~~-~g-~~~~VRv-~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 32 AGFDWLLIDGEHAPNDVRTILSQLQALAP-YP-SSPVVRP-AIGDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHh-cC-CCcEEEC-CCCCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 36999999999888888888888876532 12 2344444 4456678999999999997 45667788877777654
No 227
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=41.60 E-value=2e+02 Score=29.97 Aligned_cols=36 Identities=8% Similarity=0.133 Sum_probs=26.5
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhH
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNL 745 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~ 745 (1099)
.+++++.+++..+..+..++.. .|..+..+.+....
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~~~~~ 38 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEK-AGYDVVEAGDGDEA 38 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHH-CCCEEEEEcCHHHH
Confidence 4578888888888888888876 67777666555433
No 228
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=40.96 E-value=2.5e+02 Score=33.83 Aligned_cols=108 Identities=12% Similarity=0.039 Sum_probs=50.8
Q ss_pred CCEEEEEeCCHHH---HHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH--HHHH
Q 001330 962 GKKFLVVEDDAIV---LKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG--WEAT 1036 (1099)
Q Consensus 962 ~~~ILvVdDd~~~---~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG--~e~~ 1036 (1099)
+++|++|+-|+.- .+.++..-+..|..+....++.+.++...+.++.+. ...||+||+|.- +... -++.
T Consensus 128 G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~----~~~~DvViIDTa--Gr~~~d~~lm 201 (429)
T TIGR01425 128 GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK----KENFDIIIVDTS--GRHKQEDSLF 201 (429)
T ss_pred CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH----hCCCCEEEEECC--CCCcchHHHH
Confidence 5689998887533 233333334455555554443333222221111111 236899999974 3332 2455
Q ss_pred HHHhccccccCCCccEEEEeccCC--HHHHHHHHH--cCCCEE
Q 001330 1037 RLIRKEEEQYDVHIPIIALTAHAM--AGVASKIVD--AGMDFH 1075 (1099)
Q Consensus 1037 r~IR~~~~~~~~~ipIIalTa~~~--~~~~~~~l~--aG~ddy 1075 (1099)
+++++......++-.++++.+... .....+++. .|.+++
T Consensus 202 ~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~ 244 (429)
T TIGR01425 202 EEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSV 244 (429)
T ss_pred HHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEE
Confidence 555543322233334555554332 233344442 355543
No 229
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=39.64 E-value=36 Score=36.25 Aligned_cols=48 Identities=21% Similarity=0.372 Sum_probs=36.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEE
Q 001330 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM 1023 (1099)
Q Consensus 965 ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlm 1023 (1099)
|||||.....-..+...|++.|+++.+..+.+..++.+. ...||.|++
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~-----------~~~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIE-----------NMKPDFLMI 49 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHh-----------hCCCCEEEE
Confidence 899999999999999999999999988876644344332 125787776
No 230
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=39.46 E-value=27 Score=44.06 Aligned_cols=51 Identities=20% Similarity=0.403 Sum_probs=28.5
Q ss_pred EEEEEeCCCCCCcccHh--------hhccccccc---cccCCC-CCCCccccHHHHHHHHHhc
Q 001330 591 EFEVDDTGKGIPKDKQN--------SIFEEFVQV---KETALG-HQEGLGLGLGIVQSMVHLM 641 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~--------~IFe~F~q~---d~s~~~-~~~GtGLGLaIvk~lVe~~ 641 (1099)
.++|.|+|.|||-+..+ -||...... +...-+ .+|-.|.|++.|--+-+.+
T Consensus 67 sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~~ 129 (637)
T TIGR01058 67 SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSWL 129 (637)
T ss_pred eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccceeeceE
Confidence 38999999999975332 223211110 111111 1233699999887776654
No 231
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=39.40 E-value=78 Score=35.72 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=74.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEE------CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHH
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVC------RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATR 1037 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a------~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r 1037 (1099)
+++++-|-...-+.++.. ..|+..... .|..||+..++....+.+.-..-.+..+-.. -=...-++++++
T Consensus 121 ~~~fmad~~~l~EAlrai--~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~--a~~~~~~~elL~ 196 (293)
T PRK04180 121 TVPFVCGARNLGEALRRI--AEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTA--AKELQAPYELVK 196 (293)
T ss_pred CCCEEccCCCHHHHHHHH--HCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhh--ccccCCCHHHHH
Confidence 467777766666666554 357766543 4778888776653222221100000000000 000235789999
Q ss_pred HHhccccccCCCccEE--EEeccCCHHHHHHHHHcCCCEE-----EeCCCCHHHHHHHHHHHHHH
Q 001330 1038 LIRKEEEQYDVHIPII--ALTAHAMAGVASKIVDAGMDFH-----LTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1038 ~IR~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~ddy-----L~KPi~~~~L~~~l~~i~~~ 1095 (1099)
++++. ..+||| +..+-.++++...++++|++.+ |.|.-++.+....+.+.+..
T Consensus 197 ei~~~-----~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 197 EVAEL-----GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred HHHHh-----CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 99863 248998 7787789999999999999997 45555777777666665544
No 232
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=39.26 E-value=1.4e+02 Score=32.17 Aligned_cols=57 Identities=18% Similarity=0.388 Sum_probs=43.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCC--eEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGA--KFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~--~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~ 1026 (1099)
.+|.-+|-|+...+..+..+++.|+ .+. ...++.+.+..+.. .....+||+||+|..
T Consensus 71 g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~-------~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 71 GKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN-------DGEEGQFDFVFIDAD 130 (205)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH-------TTTTTSEEEEEEEST
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh-------ccCCCceeEEEEccc
Confidence 4899999999999999999999886 343 45777777766532 112357999999984
No 233
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=39.22 E-value=1.9e+02 Score=32.30 Aligned_cols=71 Identities=10% Similarity=0.095 Sum_probs=51.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHH
Q 001330 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL-QKDKLLDVVK 1090 (1099)
Q Consensus 1017 ~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi-~~~~L~~~l~ 1090 (1099)
.||.|++|++=-.+|--++...||..... .++.++=....+...+.+++++|+++.+.-=+ +.++..+.++
T Consensus 40 G~D~v~iD~EHg~~~~~~~~~~i~a~~~~---g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 40 GFDWLVLDGEHAPNDVSTFIPQLMALKGS---ASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred CCCEEEEccccCCCCHHHHHHHHHHHhhc---CCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHH
Confidence 69999999999999988888888865321 23444444556788999999999999877444 4555555554
No 234
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=38.70 E-value=1.8e+02 Score=30.73 Aligned_cols=35 Identities=6% Similarity=0.065 Sum_probs=26.0
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhh
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKN 744 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~ 744 (1099)
.+++++++++..+..+...+.. .|..+..+.+...
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~ 37 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQ-NGFQPVEAEDYDS 37 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHH-CCCEEEEECCHHH
Confidence 3577888888888888888876 6787776665543
No 235
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=38.65 E-value=1.2e+02 Score=40.31 Aligned_cols=117 Identities=14% Similarity=0.186 Sum_probs=72.4
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
.+.+++++++++..+..+...++. .|..+..+.+.......+...
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~-~G~~v~~a~~g~eal~~l~~~---------------------------------- 844 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGS-LGYQCKTANDGVDALNVLSKN---------------------------------- 844 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHH-cCCEEEEECCHHHHHHHHHhC----------------------------------
Confidence 456789999999999999999988 899998888876544333211
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
.+.++++|...+.. +..+..+..+...+ ..+++.+..... ...+...
T Consensus 845 ----------------------------~~DlVl~D~~mP~m-dG~el~~~ir~~~~--~~pII~lTa~~~--~~~~~~~ 891 (924)
T PRK10841 845 ----------------------------HIDIVLTDVNMPNM-DGYRLTQRLRQLGL--TLPVIGVTANAL--AEEKQRC 891 (924)
T ss_pred ----------------------------CCCEEEEcCCCCCC-CHHHHHHHHHhcCC--CCCEEEEECCCC--HHHHHHH
Confidence 13455555544322 22233333333222 234454433221 1223345
Q ss_pred ccCccccccccCCCcchHHHHHhhc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
...|.+.++.||+....|.+.+..+
T Consensus 892 ~~aG~d~~L~KPv~~~~L~~~L~~~ 916 (924)
T PRK10841 892 LEAGMDSCLSKPVTLDVLKQTLTVY 916 (924)
T ss_pred HHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 5678899999999999998888654
No 236
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=38.25 E-value=2.7e+02 Score=31.28 Aligned_cols=106 Identities=15% Similarity=0.140 Sum_probs=55.9
Q ss_pred CEEEEEeCCHH---HHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC--HHHHHH
Q 001330 963 KKFLVVEDDAI---VLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN--GWEATR 1037 (1099)
Q Consensus 963 ~~ILvVdDd~~---~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md--G~e~~r 1037 (1099)
.++.+++-|.. ....++...+..|+.+..+.+..+..+.+.. +. ....+|+||+|. |+.. .-+.++
T Consensus 104 ~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~----l~---~~~~~D~ViIDt--~Gr~~~~~~~l~ 174 (270)
T PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY----FK---EEARVDYILIDT--AGKNYRASETVE 174 (270)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHH----HH---hcCCCCEEEEEC--CCCCcCCHHHHH
Confidence 46777766543 3334455556678888877776543333321 11 123689999997 3333 234444
Q ss_pred HHhccccccCCCccEEEEeccCCHHHHHHH----HHcCCCEEEe
Q 001330 1038 LIRKEEEQYDVHIPIIALTAHAMAGVASKI----VDAGMDFHLT 1077 (1099)
Q Consensus 1038 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~----l~aG~ddyL~ 1077 (1099)
++++......+.-.+++++|.....+..+. -..+.+++|.
T Consensus 175 el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~ 218 (270)
T PRK06731 175 EMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVF 218 (270)
T ss_pred HHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEE
Confidence 444332222222336667776555444332 2457777643
No 237
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.93 E-value=1.2e+02 Score=34.40 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=48.6
Q ss_pred EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHH
Q 001330 989 FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV 1068 (1099)
Q Consensus 989 v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l 1068 (1099)
.+.+++-+||.+.+. ...|+|++| +|+.-+=-++++.+|+. .++ ..+..++.-..+...+..
T Consensus 203 eVEv~tl~ea~eal~------------~gaDiI~LD-nm~~e~vk~av~~~~~~----~~~-v~ieaSGGI~~~ni~~yA 264 (289)
T PRK07896 203 EVEVDSLEQLDEVLA------------EGAELVLLD-NFPVWQTQEAVQRRDAR----APT-VLLESSGGLTLDTAAAYA 264 (289)
T ss_pred EEEcCCHHHHHHHHH------------cCCCEEEeC-CCCHHHHHHHHHHHhcc----CCC-EEEEEECCCCHHHHHHHH
Confidence 456789999988874 258999999 45533333444444432 223 357788889999999999
Q ss_pred HcCCCEE
Q 001330 1069 DAGMDFH 1075 (1099)
Q Consensus 1069 ~aG~ddy 1075 (1099)
+.|+|.+
T Consensus 265 ~tGvD~I 271 (289)
T PRK07896 265 ETGVDYL 271 (289)
T ss_pred hcCCCEE
Confidence 9999975
No 238
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=37.87 E-value=4.4e+02 Score=30.56 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=60.4
Q ss_pred EEEEEeC----CHHHHHHHHHHHhhcC-CeEEE--ECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEec-------C---
Q 001330 964 KFLVVED----DAIVLKVTSAVLGKLG-AKFEV--CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC-------E--- 1026 (1099)
Q Consensus 964 ~ILvVdD----d~~~~~~l~~~L~~~G-~~v~~--a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi-------~--- 1026 (1099)
.++.+|- .....+.++.+=+..+ ..|.. +.+.++|..+.. ..+|.|..-. .
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~------------aGad~i~vg~~~G~~~~t~~~ 180 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN------------AGADATKVGIGPGKVCITKIK 180 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH------------cCcCEEEECCCCCcccccccc
Confidence 4677753 2334444444434433 33333 678888877663 2477765331 1
Q ss_pred CC-CCC--HHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEE
Q 001330 1027 MP-VMN--GWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076 (1099)
Q Consensus 1027 MP-~md--G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL 1076 (1099)
.. ... ++.+++.+++. .++|||+-.+-....++.+|+..|++.+.
T Consensus 181 ~g~~~~~w~l~ai~~~~~~-----~~ipVIAdGGI~~~~Di~KaLa~GA~aV~ 228 (326)
T PRK05458 181 TGFGTGGWQLAALRWCAKA-----ARKPIIADGGIRTHGDIAKSIRFGATMVM 228 (326)
T ss_pred cCCCCCccHHHHHHHHHHH-----cCCCEEEeCCCCCHHHHHHHHHhCCCEEE
Confidence 00 112 56667888753 25899999999999999999999999864
No 239
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=37.87 E-value=3.7e+02 Score=29.51 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=45.0
Q ss_pred CccEEEEecCCCCC--CHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1017 PYDYIMMDCEMPVM--NGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1017 ~~DlIlmDi~MP~m--dG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
..|.|-+|...|+. --++.++++++.- ..+|||+--+-.+.++..++++.|+|....
T Consensus 161 Gad~i~Vd~~~~g~~~a~~~~I~~i~~~~----~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 161 GFDGIHVDAMYPGKPYADMDLLKILSEEF----NDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCCEEEEeeCCCCCchhhHHHHHHHHHhc----CCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 57888889777764 2478888888631 138999998888999999999999998753
No 240
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=37.72 E-value=2.6e+02 Score=29.52 Aligned_cols=87 Identities=22% Similarity=0.249 Sum_probs=48.8
Q ss_pred HHHHHhhcCCeEEE---ECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH-------HHHHHHHhccccccC
Q 001330 978 TSAVLGKLGAKFEV---CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG-------WEATRLIRKEEEQYD 1047 (1099)
Q Consensus 978 l~~~L~~~G~~v~~---a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG-------~e~~r~IR~~~~~~~ 1047 (1099)
..+.+++.|..+.. ..+..+.++.+.. ..|.|+.+-.-|+..| .+.++++|+.-....
T Consensus 96 ~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~------------~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~ 163 (210)
T TIGR01163 96 LLQLIKDLGAKAGIVLNPATPLEFLEYVLP------------DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENG 163 (210)
T ss_pred HHHHHHHcCCcEEEEECCCCCHHHHHHHHh------------hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcC
Confidence 33555566755433 2344555555421 3577777655454443 345556664322222
Q ss_pred CCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1048 VHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1048 ~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
+++||++-.+ -..+...++++.|+|.++.
T Consensus 164 ~~~~i~v~GG-I~~env~~l~~~gad~iiv 192 (210)
T TIGR01163 164 LSILIEVDGG-VNDDNARELAEAGADILVA 192 (210)
T ss_pred CCceEEEECC-cCHHHHHHHHHcCCCEEEE
Confidence 3367654444 4578888889999998754
No 241
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=37.60 E-value=3.9e+02 Score=28.00 Aligned_cols=83 Identities=11% Similarity=0.101 Sum_probs=53.8
Q ss_pred HHHHHHHhhcCCeEE----EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC-----CCCCCHHHHHHHHhcccccc
Q 001330 976 KVTSAVLGKLGAKFE----VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE-----MPVMNGWEATRLIRKEEEQY 1046 (1099)
Q Consensus 976 ~~l~~~L~~~G~~v~----~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~-----MP~mdG~e~~r~IR~~~~~~ 1046 (1099)
..+.+..++.|..+. .+.+..++++.+. ...|.|.+... .....+.+.++++++.
T Consensus 93 ~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~------------~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~---- 156 (202)
T cd04726 93 KKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK------------LGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL---- 156 (202)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH------------CCCCEEEEcCcccccccCCCCCHHHHHHHHhh----
Confidence 444455666776554 4567777776442 25788777421 1124567888888753
Q ss_pred CCCccEEEEeccCCHHHHHHHHHcCCCEEE
Q 001330 1047 DVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076 (1099)
Q Consensus 1047 ~~~ipIIalTa~~~~~~~~~~l~aG~ddyL 1076 (1099)
.++||++.-+- ..+...+++++|+|.++
T Consensus 157 -~~~~i~~~GGI-~~~~i~~~~~~Gad~vv 184 (202)
T cd04726 157 -LGVKVAVAGGI-TPDTLPEFKKAGADIVI 184 (202)
T ss_pred -cCCCEEEECCc-CHHHHHHHHhcCCCEEE
Confidence 25787765554 58899999999999874
No 242
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=37.44 E-value=98 Score=33.68 Aligned_cols=56 Identities=16% Similarity=0.355 Sum_probs=40.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCe--EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAK--FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP 1028 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~--v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP 1028 (1099)
+|.-+|-|+...+..++.+++.|.. +..... -+|++.+.+. ...+||+||+|..=+
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~--------~~~~fDliFIDadK~ 143 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRL--------LDGSFDLVFIDADKA 143 (219)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhc--------cCCCccEEEEeCChh
Confidence 8999999999999999999999963 333331 3444444320 245899999998644
No 243
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=37.10 E-value=2.1e+02 Score=30.52 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=28.1
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhh
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKN 744 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~ 744 (1099)
..+++++.+++..+..+...+.. .|..+..+.+...
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~-~g~~v~~~~~~~~ 40 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTE-QGFQVRSAANAEQ 40 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHH-CCCEEEEECCHHH
Confidence 35688888888888899988877 7888877766554
No 244
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.98 E-value=4.1e+02 Score=31.63 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=60.3
Q ss_pred CCEEEEEeCCHH---HHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC--HHHHH
Q 001330 962 GKKFLVVEDDAI---VLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN--GWEAT 1036 (1099)
Q Consensus 962 ~~~ILvVdDd~~---~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md--G~e~~ 1036 (1099)
+.+|.+|+-|+. -.+.++..-+..|+.+..+.+..+..+.+... . ....+|+||+|.- +.+ --+.+
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l----~---~~~~~D~VLIDTA--Gr~~~d~~~l 304 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYM----T---YVNCVDHILIDTV--GRNYLAEESV 304 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHH----H---hcCCCCEEEEECC--CCCccCHHHH
Confidence 467888888764 23445555566777777777877765554321 1 1135899999973 332 23344
Q ss_pred HHHhccccccCCCccEEEEeccCCHHHHHHHH----HcCCCEEEe
Q 001330 1037 RLIRKEEEQYDVHIPIIALTAHAMAGVASKIV----DAGMDFHLT 1077 (1099)
Q Consensus 1037 r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l----~aG~ddyL~ 1077 (1099)
.+++.......++..++++++.....+....+ ..|.+.+|.
T Consensus 305 ~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~ 349 (407)
T PRK12726 305 SEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFII 349 (407)
T ss_pred HHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEE
Confidence 44444322222333455666655655655543 356677644
No 245
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=36.95 E-value=1.3e+02 Score=39.83 Aligned_cols=117 Identities=15% Similarity=0.235 Sum_probs=70.4
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
+.+|+++++++..+..+...+.. .|+.+..+.+.......+..
T Consensus 681 ~~~vLivdD~~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~~~~------------------------------------ 723 (914)
T PRK11466 681 GLRLLLIEDNPLTQRITAEMLNT-SGAQVVAVGNAAQALETLQN------------------------------------ 723 (914)
T ss_pred CcceEEEeCCHHHHHHHHHHHHh-cCCceEEeCCHHHHHHHHHc------------------------------------
Confidence 45789999999999999999987 88888887776544332210
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
...+.++++|...+.. +....++.++...+ .++++.+...... .......
T Consensus 724 -------------------------~~~~Dlvl~D~~mp~~-~G~~~~~~lr~~~~--~~~ii~~t~~~~~--~~~~~~~ 773 (914)
T PRK11466 724 -------------------------SEPFAAALVDFDLPDY-DGITLARQLAQQYP--SLVLIGFSAHVID--ETLRQRT 773 (914)
T ss_pred -------------------------CCCCCEEEEeCCCCCC-CHHHHHHHHHhhCC--CCCEEEEeCCCch--hhHHHHH
Confidence 0123455666554332 22233334433333 2344444332211 1122344
Q ss_pred cCccccccccCCCcchHHHHHhhc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
..+.+.++.||+....|...+..+
T Consensus 774 ~~g~~~~l~KP~~~~~L~~~i~~~ 797 (914)
T PRK11466 774 SSLFRGIIPKPVPREVLGQLLAHY 797 (914)
T ss_pred hcCcCCEEeCCCCHHHHHHHHHHH
Confidence 567788999999999999888754
No 246
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=36.83 E-value=2e+02 Score=30.21 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=25.6
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhh
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKN 744 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~ 744 (1099)
+++++.++...+..+..+++. .|+.+..+.+...
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~-~~~~v~~~~~~~~ 35 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKR-QGYQVTTYADRPS 35 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHH-CCcEEEEecCHHH
Confidence 477888888888889998887 6887776655443
No 247
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.32 E-value=4.1e+02 Score=29.05 Aligned_cols=98 Identities=12% Similarity=0.046 Sum_probs=56.8
Q ss_pred HHHhhcCC-eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEecc
Q 001330 980 AVLGKLGA-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAH 1058 (1099)
Q Consensus 980 ~~L~~~G~-~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~ 1058 (1099)
..|.+.+. -|....+.++|++..+...+ .. +=.+.+.|-.-++.+.++.+++......+++ +|..-.-
T Consensus 10 ~~l~~~~vi~Vvr~~~~~~a~~~~~al~~--------gG--i~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~-~vGaGTV 78 (222)
T PRK07114 10 TAMKATGMVPVFYHADVEVAKKVIKACYD--------GG--ARVFEFTNRGDFAHEVFAELVKYAAKELPGM-ILGVGSI 78 (222)
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHHH--------CC--CCEEEEeCCCCcHHHHHHHHHHHHHhhCCCe-EEeeEeC
Confidence 44555553 45566788888777654211 12 2345666666678888888874322111222 3444444
Q ss_pred CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 001330 1059 AMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089 (1099)
Q Consensus 1059 ~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l 1089 (1099)
.+.++...+.++|++- +.-|.--.++.+..
T Consensus 79 l~~e~a~~a~~aGA~F-iVsP~~~~~v~~~~ 108 (222)
T PRK07114 79 VDAATAALYIQLGANF-IVTPLFNPDIAKVC 108 (222)
T ss_pred cCHHHHHHHHHcCCCE-EECCCCCHHHHHHH
Confidence 5778888999999984 44565555555443
No 248
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=36.28 E-value=2.7e+02 Score=31.89 Aligned_cols=82 Identities=16% Similarity=0.022 Sum_probs=57.5
Q ss_pred HHHHHhhcCCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC---C--CCCCHHHHHHHHhccccccCCCcc
Q 001330 978 TSAVLGKLGAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE---M--PVMNGWEATRLIRKEEEQYDVHIP 1051 (1099)
Q Consensus 978 l~~~L~~~G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~---M--P~mdG~e~~r~IR~~~~~~~~~ip 1051 (1099)
+...+++.|..+ ..+.+.++|..+.+ ...|.|+..-. . ....-+++++++++. .++|
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~------------~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~-----~~iP 163 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEK------------AGADAVIAEGMESGGHIGELTTMALVPQVVDA-----VSIP 163 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHH------------cCCCEEEEECcccCCCCCCCcHHHHHHHHHHH-----hCCC
Confidence 345566668665 34677777755542 25788887432 1 122347888888853 2589
Q ss_pred EEEEeccCCHHHHHHHHHcCCCEEE
Q 001330 1052 IIALTAHAMAGVASKIVDAGMDFHL 1076 (1099)
Q Consensus 1052 IIalTa~~~~~~~~~~l~aG~ddyL 1076 (1099)
||+--+-.+.++..+++..|+++..
T Consensus 164 viaaGGI~~~~~~~~al~~GA~gV~ 188 (307)
T TIGR03151 164 VIAAGGIADGRGMAAAFALGAEAVQ 188 (307)
T ss_pred EEEECCCCCHHHHHHHHHcCCCEee
Confidence 9999999999999999999999864
No 249
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=35.43 E-value=2.5e+02 Score=31.15 Aligned_cols=71 Identities=10% Similarity=0.109 Sum_probs=52.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHH
Q 001330 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL-QKDKLLDVVK 1090 (1099)
Q Consensus 1017 ~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi-~~~~L~~~l~ 1090 (1099)
.||.|++|++=-.+|--++...+|..... .++.++=....+...+.+++++|+++.+.-=+ +.++..+.++
T Consensus 33 G~D~v~iD~EHg~~~~~~~~~~~~a~~~~---g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~ 104 (249)
T TIGR03239 33 GFDWLLLDGEHAPNDVLTFIPQLMALKGS---ASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVA 104 (249)
T ss_pred CCCEEEEecccCCCCHHHHHHHHHHHhhc---CCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHH
Confidence 69999999999999988888888865321 23334444556788999999999999877444 4555555553
No 250
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.40 E-value=3.3e+02 Score=32.79 Aligned_cols=103 Identities=12% Similarity=0.095 Sum_probs=56.0
Q ss_pred CCEEEEEeCCHH---HHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC--HHHHH
Q 001330 962 GKKFLVVEDDAI---VLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN--GWEAT 1036 (1099)
Q Consensus 962 ~~~ILvVdDd~~---~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md--G~e~~ 1036 (1099)
+.+|++++-|+. ....+....+..|..+..+.+..++.+.+. ...+|+||+|. |+.. -.+.+
T Consensus 252 G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~-----------~~~~D~VLIDT--aGr~~rd~~~l 318 (432)
T PRK12724 252 GKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA-----------RDGSELILIDT--AGYSHRNLEQL 318 (432)
T ss_pred CCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH-----------hCCCCEEEEeC--CCCCccCHHHH
Confidence 568999988872 123344444555666666555555554442 13689999996 3321 11333
Q ss_pred HHHhccccc---cCCCccEEEEeccCCHHHHHHHHH----cCCCEEEe
Q 001330 1037 RLIRKEEEQ---YDVHIPIIALTAHAMAGVASKIVD----AGMDFHLT 1077 (1099)
Q Consensus 1037 r~IR~~~~~---~~~~ipIIalTa~~~~~~~~~~l~----aG~ddyL~ 1077 (1099)
+++++.... ..+.-.++++++....++...+.+ .|.++.|.
T Consensus 319 ~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIl 366 (432)
T PRK12724 319 ERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILL 366 (432)
T ss_pred HHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 333322111 012235777888777766555544 56777643
No 251
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=34.74 E-value=1.1e+02 Score=34.29 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=31.1
Q ss_pred HHHHHHHHhccccccCCCccEEEEeccC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 001330 1032 GWEATRLIRKEEEQYDVHIPIIALTAHA------MAGVASKIVDAGMDFHLTKPLQKDKLLDVVKS 1091 (1099)
Q Consensus 1032 G~e~~r~IR~~~~~~~~~ipIIalTa~~------~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~ 1091 (1099)
.+++++++|+. ..+|+|+||=.+ ......+|.++|+|+.+.--+..++..+.+..
T Consensus 79 ~~~~~~~~r~~-----~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~ 139 (263)
T CHL00200 79 ILSILSEVNGE-----IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISV 139 (263)
T ss_pred HHHHHHHHhcC-----CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHH
Confidence 45666666632 235666666432 24456667777777777666666555444433
No 252
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=34.51 E-value=3.2e+02 Score=29.30 Aligned_cols=86 Identities=12% Similarity=0.117 Sum_probs=54.2
Q ss_pred hhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEec-C-CCCCCHHHHHHHHhccccccCCCccEEEEeccC
Q 001330 983 GKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC-E-MPVMNGWEATRLIRKEEEQYDVHIPIIALTAHA 1059 (1099)
Q Consensus 983 ~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi-~-MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~ 1059 (1099)
...|..+. .+.+.+++.+... ..+|.+..-- . .....+++.++++++.-+ ..+|+|+..+-.
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~------------~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~---~~~pvia~gGI~ 182 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALA------------LGAKIIGINNRDLKTFEVDLNTTERLAPLIP---KDVILVSESGIS 182 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHH------------cCCCEEEEeCCCccccCcCHHHHHHHHHhCC---CCCEEEEEcCCC
Confidence 45677654 4456666544432 2467665431 0 001123577888875321 247999999999
Q ss_pred CHHHHHHHHHcCCCEEE-----eCCCCHH
Q 001330 1060 MAGVASKIVDAGMDFHL-----TKPLQKD 1083 (1099)
Q Consensus 1060 ~~~~~~~~l~aG~ddyL-----~KPi~~~ 1083 (1099)
..++..+++++|+++++ .|+-++.
T Consensus 183 s~edi~~~~~~Ga~gvivGsai~~~~~p~ 211 (217)
T cd00331 183 TPEDVKRLAEAGADAVLIGESLMRAPDPG 211 (217)
T ss_pred CHHHHHHHHHcCCCEEEECHHHcCCCCHH
Confidence 99999999999999984 4555543
No 253
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=34.51 E-value=2.9e+02 Score=28.54 Aligned_cols=55 Identities=27% Similarity=0.337 Sum_probs=40.7
Q ss_pred CccEEEEecCCCC--------CCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1017 PYDYIMMDCEMPV--------MNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1017 ~~DlIlmDi~MP~--------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
.+|+|+++..-|. ..|.+.++++++. .++||++..+-. .+...+++++|++.+..
T Consensus 115 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 115 GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-----VEIPVVAIGGIT-PENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-----CCCCEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence 4899988654442 3567888888753 358999887764 68888999999998743
No 254
>PLN03128 DNA topoisomerase 2; Provisional
Probab=34.33 E-value=54 Score=44.05 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=28.7
Q ss_pred EEEEEeCCCCCCcccHh--------hhcccccccc---cc-CCCCCCCccccHHHHHHHHHhcC
Q 001330 591 EFEVDDTGKGIPKDKQN--------SIFEEFVQVK---ET-ALGHQEGLGLGLGIVQSMVHLMK 642 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~--------~IFe~F~q~d---~s-~~~~~~GtGLGLaIvk~lVe~~g 642 (1099)
.|+|.|+|.|||-+..+ -||....... .. ..-.+|=.|.|.+.|--+-+.+-
T Consensus 87 sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNaLS~~f~ 150 (1135)
T PLN03128 87 TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANIFSTEFT 150 (1135)
T ss_pred eEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccceeeccccCCCCeEEEeecCeEE
Confidence 38999999999976432 2333222211 11 11112336889887766655543
No 255
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=33.86 E-value=2.1e+02 Score=31.28 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=43.4
Q ss_pred cEEEEecCCCCCC-H--HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1019 DYIMMDCEMPVMN-G--WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1019 DlIlmDi~MP~md-G--~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
.++++|+..-++. | +++++.+.+. ..+|+++-.+-.+.++..++++.|++..+.
T Consensus 161 ~li~~di~~~G~~~g~~~~~~~~i~~~-----~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 161 ELIVLDIDRVGSGQGPDLELLERLAAR-----ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred eEEEEEcCccccCCCcCHHHHHHHHHh-----cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5999999875432 2 5778888753 358999999999999999999999998764
No 256
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=33.85 E-value=3.5e+02 Score=28.44 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=51.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHH
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLG--AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEAT 1036 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G--~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~ 1036 (1099)
.+++|+.+++..++.+..+++..| |+|..+.+-+++++.+++ ....+.|+..+...+. .++-+
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~---------~G~vvhLtmyga~~~~--~~~~i 96 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKD---------GGIVVHLTMYGENIQD--VEPEI 96 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHh---------CCcEEEEEEecCCccc--hHHHH
Confidence 579999999999999999999987 678999999999988852 2246888888888766 44433
No 257
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.78 E-value=3.5e+02 Score=32.58 Aligned_cols=102 Identities=16% Similarity=0.068 Sum_probs=56.6
Q ss_pred CCEEEEEeCCHHH---HHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH-----H
Q 001330 962 GKKFLVVEDDAIV---LKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG-----W 1033 (1099)
Q Consensus 962 ~~~ILvVdDd~~~---~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG-----~ 1033 (1099)
+.+|.+|+-|+.- .+.+...-+..|..+..+.+..+....+.+ ...+|+||+|. |++.. .
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~----------~~~~DlVlIDt--~G~~~~d~~~~ 318 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ----------LRDCDVILIDT--AGRSQRDKRLI 318 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH----------hCCCCEEEEeC--CCCCCCCHHHH
Confidence 4689999988742 223333344567777777777665555532 12589999996 33322 2
Q ss_pred HHHHHHhccccccCCCccEEEEeccCCHHHHHHHH----HcCCCEEEe
Q 001330 1034 EATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV----DAGMDFHLT 1077 (1099)
Q Consensus 1034 e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l----~aG~ddyL~ 1077 (1099)
+.++.+-.. ...+.-..+++++.....+..+.. ..|.+.+|.
T Consensus 319 ~~L~~ll~~--~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~ 364 (424)
T PRK05703 319 EELKALIEF--SGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIF 364 (424)
T ss_pred HHHHHHHhc--cCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 233333221 111112366788877766655443 346666643
No 258
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=33.47 E-value=49 Score=35.66 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.8
Q ss_pred cceEEccHHHHHHHHHHHHHhHhhccC
Q 001330 504 SCHVRGDRVKLKQILCNLVSNSMKFTS 530 (1099)
Q Consensus 504 ~~~v~gD~~rL~QIL~NLL~NAiKfT~ 530 (1099)
...+.|||.|-+-|-.|+++||++++.
T Consensus 16 ~VLmPGDPlRAK~iAetfLe~~~~vne 42 (236)
T COG0813 16 VVLMPGDPLRAKYIAETFLENAVCVNE 42 (236)
T ss_pred eeecCCCCchHHHHHHHHHhhhhhhhh
Confidence 345689999999999999999999974
No 259
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.39 E-value=2e+02 Score=24.61 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=29.7
Q ss_pred HhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHH
Q 001330 400 KASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGI 446 (1099)
Q Consensus 400 ~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~L 446 (1099)
.--||..+=|..|.|++++= ..++..+|+..+.........+
T Consensus 18 ~~RHD~~NhLqvI~gllqlg-----~~~~a~eYi~~~~~~~~~~s~l 59 (62)
T PF14689_consen 18 AQRHDFLNHLQVIYGLLQLG-----KYEEAKEYIKELSKDLQQESEL 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHH
Confidence 33499999999999999863 2345677777776666655433
No 260
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.39 E-value=4.5e+02 Score=28.90 Aligned_cols=90 Identities=13% Similarity=0.035 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhcCCeEEEECCH---HHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC------CHHHHHHHHhcccc
Q 001330 974 VLKVTSAVLGKLGAKFEVCRNG---KEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM------NGWEATRLIRKEEE 1044 (1099)
Q Consensus 974 ~~~~l~~~L~~~G~~v~~a~~g---~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m------dG~e~~r~IR~~~~ 1044 (1099)
....+...+++.|..+..+-+. .+.++.+.+ ....+++| -.+|+- +-.+.++++|+...
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~-----------~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~ 184 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK-----------LSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLVG 184 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH-----------hCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcC
Confidence 3445667778889877655333 344444422 13567777 456663 22456777776421
Q ss_pred ccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCC
Q 001330 1045 QYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079 (1099)
Q Consensus 1045 ~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KP 1079 (1099)
..||++=.+-...++..++.++|+|.++.--
T Consensus 185 ----~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 185 ----NKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred ----CCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 3566544444478899999999999998754
No 261
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=33.27 E-value=2.8e+02 Score=31.17 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=53.0
Q ss_pred CCEEEEEeCCHH---HHHHHHHHHhhcCCeEEEECCH---HH-HHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH--
Q 001330 962 GKKFLVVEDDAI---VLKVTSAVLGKLGAKFEVCRNG---KE-AFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG-- 1032 (1099)
Q Consensus 962 ~~~ILvVdDd~~---~~~~l~~~L~~~G~~v~~a~~g---~e-Al~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG-- 1032 (1099)
+++|++++-|.. ..+.+....+..|..+.....+ .. +.+.+... ....||+||+|. |+...
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~--------~~~~~D~ViIDT--~G~~~~d 169 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA--------KARNIDVVLIDT--AGRLQNK 169 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH--------HHCCCCEEEEeC--CCCCcch
Confidence 578999997752 2344555566677665544332 12 12222211 123699999997 43332
Q ss_pred HHHHHHHhccccc------cCCCccEEEEeccCCHHHHHHHH----HcCCCEEE
Q 001330 1033 WEATRLIRKEEEQ------YDVHIPIIALTAHAMAGVASKIV----DAGMDFHL 1076 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~------~~~~ipIIalTa~~~~~~~~~~l----~aG~ddyL 1076 (1099)
-..+.++++.... ..++-.++++.+....+....+. ..|.++.+
T Consensus 170 ~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~I 223 (272)
T TIGR00064 170 VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGII 223 (272)
T ss_pred HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEE
Confidence 2333333322111 11334567777765554433332 25677754
No 262
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=33.12 E-value=2.8e+02 Score=31.20 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=51.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHH
Q 001330 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ-KDKLLDVVK 1090 (1099)
Q Consensus 1017 ~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~-~~~L~~~l~ 1090 (1099)
.||.|++|++=-..|--++...+|..... .-.|+| =....+...+.+++++|+++.+.-=++ .++..+.++
T Consensus 39 GfD~v~iD~EHg~~~~~~l~~~i~a~~~~--g~~~lV-Rvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~ 110 (267)
T PRK10128 39 GYDWLLIDGEHAPNTIQDLYHQLQAIAPY--ASQPVI-RPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_pred CCCEEEEccccCCCCHHHHHHHHHHHHhc--CCCeEE-ECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHH
Confidence 59999999999888888888888865421 123444 445567888999999999999885554 444444443
No 263
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=33.00 E-value=1.4e+02 Score=31.37 Aligned_cols=69 Identities=10% Similarity=-0.003 Sum_probs=51.2
Q ss_pred EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHH
Q 001330 990 EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVD 1069 (1099)
Q Consensus 990 ~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~ 1069 (1099)
.-+.+..|+.+... ..+|+|-++- ++.. |.++++.++... +++|+++..+- +.+...++++
T Consensus 102 ~gv~t~~e~~~A~~------------~Gad~i~~~p-~~~~-g~~~~~~l~~~~----~~~p~~a~GGI-~~~n~~~~~~ 162 (190)
T cd00452 102 PGVATPTEIMQALE------------LGADIVKLFP-AEAV-GPAYIKALKGPF----PQVRFMPTGGV-SLDNAAEWLA 162 (190)
T ss_pred CCcCCHHHHHHHHH------------CCCCEEEEcC-Cccc-CHHHHHHHHhhC----CCCeEEEeCCC-CHHHHHHHHH
Confidence 34668888877763 2589998864 4444 999999998532 34788887766 7889999999
Q ss_pred cCCCEEEe
Q 001330 1070 AGMDFHLT 1077 (1099)
Q Consensus 1070 aG~ddyL~ 1077 (1099)
+|++..-.
T Consensus 163 ~G~~~v~v 170 (190)
T cd00452 163 AGVVAVGG 170 (190)
T ss_pred CCCEEEEE
Confidence 99988643
No 264
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=33.00 E-value=95 Score=35.24 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=45.7
Q ss_pred HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCE------EEeCCCCHHHHHHHHHHHHHH
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDF------HLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~dd------yL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
++.++++++. ..+|||+..+-.+.++..+++.+|+|. ++.+|.-..++.+-+.++++.
T Consensus 223 l~~v~~i~~~-----~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~ 286 (300)
T TIGR01037 223 LRMVYDVYKM-----VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKA 286 (300)
T ss_pred HHHHHHHHhc-----CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHH
Confidence 4667777753 248999999999999999999999987 577887777777777766654
No 265
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=32.91 E-value=3.3e+02 Score=26.35 Aligned_cols=103 Identities=13% Similarity=0.209 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhcCCeEEEEC--CHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC-CHHHHHHHHhccccccCCC
Q 001330 973 IVLKVTSAVLGKLGAKFEVCR--NGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM-NGWEATRLIRKEEEQYDVH 1049 (1099)
Q Consensus 973 ~~~~~l~~~L~~~G~~v~~a~--~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m-dG~e~~r~IR~~~~~~~~~ 1049 (1099)
.-...+..+|.+.|+++.... .-++.++.+.+ ...||+|.+.+.-+.. ...++++.+|+.. ++
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~----------~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~----p~ 68 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKE----------LLKPDVVGISLMTSAIYEALELAKIAKEVL----PN 68 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHH----------hcCCCEEEEeeccccHHHHHHHHHHHHHHC----CC
Confidence 345567888888898776543 33444444421 1479999999865544 3456778888642 45
Q ss_pred ccEEEEeccCCHHHHHH-HHHcCCCEEEeCCCCHHHHHHHHHH
Q 001330 1050 IPIIALTAHAMAGVASK-IVDAGMDFHLTKPLQKDKLLDVVKS 1091 (1099)
Q Consensus 1050 ipIIalTa~~~~~~~~~-~l~aG~ddyL~KPi~~~~L~~~l~~ 1091 (1099)
++||+--.+.+. .-.. ....++| |+..=---..+.+.++.
T Consensus 69 ~~iv~GG~~~t~-~p~~~~~~~~~D-~vv~GEgE~~~~~l~~~ 109 (127)
T cd02068 69 VIVVVGGPHATF-FPEEILEEPGVD-FVVIGEGEETFLKLLEE 109 (127)
T ss_pred CEEEECCcchhh-CHHHHhcCCCCC-EEEECCcHHHHHHHHHH
Confidence 666654434332 2222 3345665 55443233344444444
No 266
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.89 E-value=2.2e+02 Score=32.19 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=60.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhh---cC--C-eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHH
Q 001330 964 KFLVVEDDAIVLKVTSAVLGK---LG--A-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATR 1037 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~---~G--~-~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r 1037 (1099)
.|||-|++-... .+...++. .. . -.+.+++-+||.+.+. ..+|+|++|=..|. +=-++.+
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~------------agaDiI~LDn~~~e-~l~~~v~ 221 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAK------------AGADIIMLDNMTPE-EIREVIE 221 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH------------cCcCEEEECCCCHH-HHHHHHH
Confidence 377777775443 34443332 22 1 2346789999998884 25899999965433 3334444
Q ss_pred HHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEE
Q 001330 1038 LIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076 (1099)
Q Consensus 1038 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL 1076 (1099)
.+++... .++ ..+..++.-..+.+.+..+.|+|.+-
T Consensus 222 ~l~~~~~--~~~-~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 222 ALKREGL--RER-VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred HHHhcCc--CCC-EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 4543211 123 35778888899999999999999753
No 267
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=32.82 E-value=3.3e+02 Score=28.68 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=37.9
Q ss_pred ccEEEEecCCCCCCH-------HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1018 YDYIMMDCEMPVMNG-------WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1018 ~DlIlmDi~MP~mdG-------~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
.|.|+++...|+.+| .+.++++|+.-.....++||++.-+ -..+...++.+.|+|.++.
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GG-I~~env~~~~~~gad~iiv 193 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGG-INLETIPLLAEAGADVLVA 193 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHcCCCEEEE
Confidence 688887776666544 4455666654322222468765544 4468888999999998764
No 268
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=32.53 E-value=2.8e+02 Score=29.08 Aligned_cols=70 Identities=26% Similarity=0.245 Sum_probs=48.6
Q ss_pred EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC--------CCHHHHHHHHhccccccCCCccEEEEeccCCH
Q 001330 990 EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV--------MNGWEATRLIRKEEEQYDVHIPIIALTAHAMA 1061 (1099)
Q Consensus 990 ~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~--------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~ 1061 (1099)
..+.+..++.+... ...|+|.++-..|. ..|.+.++++.+.. ..+||+++-+- ..
T Consensus 101 ~s~h~~~e~~~a~~------------~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~----~~~pv~a~GGI-~~ 163 (196)
T TIGR00693 101 VSTHNLEELAEAEA------------EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS----IDIPIVAIGGI-TL 163 (196)
T ss_pred EeCCCHHHHHHHhH------------cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc----CCCCEEEECCc-CH
Confidence 45667777655432 36899988765542 23788888887532 24798888765 57
Q ss_pred HHHHHHHHcCCCEEE
Q 001330 1062 GVASKIVDAGMDFHL 1076 (1099)
Q Consensus 1062 ~~~~~~l~aG~ddyL 1076 (1099)
+...++++.|++++.
T Consensus 164 ~~~~~~~~~G~~gva 178 (196)
T TIGR00693 164 ENAAEVLAAGADGVA 178 (196)
T ss_pred HHHHHHHHcCCCEEE
Confidence 888899999999863
No 269
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=32.43 E-value=4.1e+02 Score=32.13 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=32.5
Q ss_pred CCEEEEEeCCHH---HHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC
Q 001330 962 GKKFLVVEDDAI---VLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026 (1099)
Q Consensus 962 ~~~ILvVdDd~~---~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~ 1026 (1099)
+++|++|+-|.. ..+.++.+....|..+....+..++.+.+.+.++.. ..+|+||+|.-
T Consensus 123 g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~------~~~DvVIIDTA 184 (437)
T PRK00771 123 GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF------KKADVIIVDTA 184 (437)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh------hcCCEEEEECC
Confidence 468898888754 233344555566766665543333333332222111 13599999975
No 270
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=32.17 E-value=1.9e+02 Score=31.28 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=42.7
Q ss_pred Ccc-EEEEecCCCCC-CH--HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcC-CCEEEe
Q 001330 1017 PYD-YIMMDCEMPVM-NG--WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAG-MDFHLT 1077 (1099)
Q Consensus 1017 ~~D-lIlmDi~MP~m-dG--~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~ddyL~ 1077 (1099)
.++ ++++|+..-++ .| +++++++++. ..+|+|+-.+-.+.++..++++.| +++++.
T Consensus 159 g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~-----~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 159 GVKAIIYTDISRDGTLSGPNVEATRELAAA-----VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCCEEEEeeecCcCCcCCCCHHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 345 78888764322 34 6888888863 248999999999999999999998 998864
No 271
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=31.96 E-value=1.1e+02 Score=32.24 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=27.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECC
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRN 994 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~ 994 (1099)
+||||||-....-..+...|++.|+++.+...
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~ 33 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNV 33 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEEC
Confidence 58999999887777799999999998877663
No 272
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=31.89 E-value=1.3e+02 Score=39.55 Aligned_cols=118 Identities=17% Similarity=0.215 Sum_probs=71.8
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
+.+++++++++..+..+..++.. .|..+..+.+.......+..
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~~~~------------------------------------ 732 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVE-LGQQVTTAASGTEALELGRQ------------------------------------ 732 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHH-cCCEEEEECCHHHHHHHHhc------------------------------------
Confidence 34789999999999999999987 79998888777654332211
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccC--CCCcceEEEeccchhcccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDV--PSLSCKVVWIDNSVIRNAHSREY 865 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~ 865 (1099)
..+.++++|...+... ....++.++... ....++++.+..... ...+..
T Consensus 733 --------------------------~~~dlil~D~~mp~~~-G~~~~~~ir~~~~~~~~~~pii~lt~~~~--~~~~~~ 783 (921)
T PRK15347 733 --------------------------HRFDLVLMDIRMPGLD-GLETTQLWRDDPNNLDPDCMIVALTANAA--PEEIHR 783 (921)
T ss_pred --------------------------CCCCEEEEeCCCCCCC-HHHHHHHHHhchhhcCCCCcEEEEeCCCC--HHHHHH
Confidence 1134555565443322 233334443321 113345555543221 122334
Q ss_pred cccCccccccccCCCcchHHHHHhhc
Q 001330 866 RLLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 866 ~~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
....|.+.++.||+....|...+...
T Consensus 784 ~~~~G~~~~l~KP~~~~~L~~~l~~~ 809 (921)
T PRK15347 784 CKKAGMNHYLTKPVTLAQLARALELA 809 (921)
T ss_pred HHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 55678899999999999998887643
No 273
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=31.78 E-value=2.3e+02 Score=29.56 Aligned_cols=81 Identities=23% Similarity=0.282 Sum_probs=54.8
Q ss_pred HHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC-------HHHHHHHHhccccccCCCc
Q 001330 978 TSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN-------GWEATRLIRKEEEQYDVHI 1050 (1099)
Q Consensus 978 l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md-------G~e~~r~IR~~~~~~~~~i 1050 (1099)
.+..+.....--..|.+.+|+.++.. ..+|.|+.---.|..+ |++..+++++. ..+
T Consensus 88 ~r~~~~~~~~ig~S~h~~~e~~~a~~------------~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~-----~~~ 150 (180)
T PF02581_consen 88 ARKLLGPDKIIGASCHSLEEAREAEE------------LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARA-----SPI 150 (180)
T ss_dssp HHHHHTTTSEEEEEESSHHHHHHHHH------------CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHH-----TSS
T ss_pred hhhhcccceEEEeecCcHHHHHHhhh------------cCCCEEEECCccCCCCCccccccCHHHHHHHHHh-----CCC
Confidence 45556544444467889888665542 3579999988766443 89988888864 248
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCEEE
Q 001330 1051 PIIALTAHAMAGVASKIVDAGMDFHL 1076 (1099)
Q Consensus 1051 pIIalTa~~~~~~~~~~l~aG~ddyL 1076 (1099)
||+++-+- +.+...++.++|++++-
T Consensus 151 pv~AlGGI-~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 151 PVYALGGI-TPENIPELREAGADGVA 175 (180)
T ss_dssp CEEEESS---TTTHHHHHHTT-SEEE
T ss_pred CEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 99999886 45667788999999863
No 274
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=31.35 E-value=1.8e+02 Score=37.60 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=30.6
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHH
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLH 746 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~ 746 (1099)
+.+++++++++..+..+...+.. .|..+..+.+.....
T Consensus 525 ~~~ILivdD~~~~~~~l~~~L~~-~g~~v~~a~~~~eal 562 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSVLEK-LGNSVDVAMTGKEAL 562 (779)
T ss_pred ccceEEEcCCHHHHHHHHHHHHH-cCCEEEEECCHHHHH
Confidence 45688899999999999999987 888888877766543
No 275
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=31.35 E-value=97 Score=35.51 Aligned_cols=61 Identities=18% Similarity=0.141 Sum_probs=48.6
Q ss_pred HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCE------EEeC-CCCHHHHHHHHHHHHHHh
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDF------HLTK-PLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~dd------yL~K-Pi~~~~L~~~l~~i~~~~ 1096 (1099)
.++++++++. ...++|||.+.+-.+.+|+.+.+.+||+. ++.+ |.-..++.+-|.++++..
T Consensus 228 l~~v~~l~~~---~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~ 295 (310)
T COG0167 228 LRVVAELYKR---LGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEK 295 (310)
T ss_pred HHHHHHHHHh---cCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHHHc
Confidence 4455555543 33479999999999999999999999974 6777 998999999888887754
No 276
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=31.32 E-value=3.8e+02 Score=29.60 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=41.1
Q ss_pred HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcC-CCEEEe------CCCCHHHHHHHHH
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAG-MDFHLT------KPLQKDKLLDVVK 1090 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~ddyL~------KPi~~~~L~~~l~ 1090 (1099)
+++++++++. ..+|+|+..+-.+.++..++++.| +++.+. +-++.+++.+.++
T Consensus 188 ~~~~~~i~~~-----~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 188 LELTKAVSEA-----VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred HHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 6888888864 258999999999999999999988 998543 4566666665554
No 277
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=31.12 E-value=4.3e+02 Score=29.98 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=45.0
Q ss_pred HHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEE------EeCCCCHHHHHHHHHHHHHH
Q 001330 1032 GWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH------LTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1032 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddy------L~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.++.++++|+. ..+|||+..+-.+.++..+++.+|+|.. +..|.-..++.+-+.++++.
T Consensus 222 ~l~~v~~i~~~-----~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~ 286 (301)
T PRK07259 222 ALRMVYQVYQA-----VDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDK 286 (301)
T ss_pred cHHHHHHHHHh-----CCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHH
Confidence 36778888763 2589999999999999999999999863 44676667777666666553
No 278
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=30.79 E-value=2.3e+02 Score=30.09 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=26.4
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHH
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLH 746 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~ 746 (1099)
-|.+++++...|..+...++. .|+++....+.+.+.
T Consensus 6 ~V~vVDDD~~vr~al~~Ll~s-~G~~v~~~~s~~~fL 41 (202)
T COG4566 6 LVHVVDDDESVRDALAFLLES-AGFQVKCFASAEEFL 41 (202)
T ss_pred eEEEEcCcHHHHHHHHHHHHh-CCceeeeecCHHHHH
Confidence 356677777778877777766 999998887776543
No 279
>PRK13566 anthranilate synthase; Provisional
Probab=30.67 E-value=1.8e+02 Score=37.38 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=32.8
Q ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHH
Q 001330 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGK 996 (1099)
Q Consensus 958 ~~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~ 996 (1099)
.+..+++|||||-...+...+...|++.|++|.+.....
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~ 560 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGF 560 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCC
Confidence 345678999999998888899999999999998876654
No 280
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=30.63 E-value=5.4e+02 Score=27.68 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=47.5
Q ss_pred EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHH
Q 001330 989 FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV 1068 (1099)
Q Consensus 989 v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l 1068 (1099)
|....+.+++++..+... ...+.+| .+.|-.-+.+++++++|+.. +++ +|..-.-.+.++..++.
T Consensus 13 Vlr~~~~e~a~~~~~al~--------~~Gi~~i--Eit~~t~~a~~~i~~l~~~~----~~~-~vGAGTVl~~~~a~~a~ 77 (204)
T TIGR01182 13 VIRIDDVDDALPLAKALI--------EGGLRVL--EVTLRTPVALDAIRLLRKEV----PDA-LIGAGTVLNPEQLRQAV 77 (204)
T ss_pred EEecCCHHHHHHHHHHHH--------HcCCCEE--EEeCCCccHHHHHHHHHHHC----CCC-EEEEEeCCCHHHHHHHH
Confidence 444566666666654321 1234433 33344456788888887642 232 23333345678888899
Q ss_pred HcCCCEEEeCCCCHHHHHHHH
Q 001330 1069 DAGMDFHLTKPLQKDKLLDVV 1089 (1099)
Q Consensus 1069 ~aG~ddyL~KPi~~~~L~~~l 1089 (1099)
++|++- +.-|..-.++.+..
T Consensus 78 ~aGA~F-ivsP~~~~~v~~~~ 97 (204)
T TIGR01182 78 DAGAQF-IVSPGLTPELAKHA 97 (204)
T ss_pred HcCCCE-EECCCCCHHHHHHH
Confidence 999874 45565555555443
No 281
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=30.13 E-value=4.2e+02 Score=28.79 Aligned_cols=105 Identities=18% Similarity=0.236 Sum_probs=60.2
Q ss_pred HHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH-------HHHHHHHhccccccCCCc
Q 001330 978 TSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG-------WEATRLIRKEEEQYDVHI 1050 (1099)
Q Consensus 978 l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG-------~e~~r~IR~~~~~~~~~i 1050 (1099)
+-..+++.|..+-.|-|...-++.+...+ ...|.|+.=---|+-.| ++-++++|+.-...+.++
T Consensus 98 ~l~~ik~~g~k~GlalnP~Tp~~~i~~~l---------~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~ 168 (220)
T PRK08883 98 TLQLIKEHGCQAGVVLNPATPLHHLEYIM---------DKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDI 168 (220)
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHH---------HhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCe
Confidence 33556778888777654444444333221 13565554334566554 455677766543334457
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHH
Q 001330 1051 PIIALTAHAMAGVASKIVDAGMDFHL-----TKPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1051 pIIalTa~~~~~~~~~~l~aG~ddyL-----~KPi~~~~L~~~l~~i 1092 (1099)
||.+ -+.-..+...++.++|+|.++ .+.-++.+....+++.
T Consensus 169 ~I~v-dGGI~~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~ 214 (220)
T PRK08883 169 RLEI-DGGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAE 214 (220)
T ss_pred eEEE-ECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHH
Confidence 7766 444558888999999999874 3433444444444443
No 282
>PRK00811 spermidine synthase; Provisional
Probab=29.90 E-value=2.6e+02 Score=31.61 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=45.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcC------CeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH---
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLG------AKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG--- 1032 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G------~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG--- 1032 (1099)
.+|.+||=|+...+..++.+...+ -.+ ....|+.+.+.. ....||+|++|..-|..-+
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~------------~~~~yDvIi~D~~dp~~~~~~l 168 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE------------TENSFDVIIVDSTDPVGPAEGL 168 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh------------CCCcccEEEECCCCCCCchhhh
Confidence 479999999999999999886432 233 345666664432 1347999999987664322
Q ss_pred --HHHHHHHhcc
Q 001330 1033 --WEATRLIRKE 1042 (1099)
Q Consensus 1033 --~e~~r~IR~~ 1042 (1099)
-++.+.+++.
T Consensus 169 ~t~ef~~~~~~~ 180 (283)
T PRK00811 169 FTKEFYENCKRA 180 (283)
T ss_pred hHHHHHHHHHHh
Confidence 3555555543
No 283
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=29.87 E-value=1.8e+02 Score=32.92 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=50.2
Q ss_pred EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHH
Q 001330 989 FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV 1068 (1099)
Q Consensus 989 v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l 1068 (1099)
.+.+.+-+||.+.+. ..+|+|++| +|+..+=-++.+.+++. .++ .++..++.-..+...+..
T Consensus 193 eVEv~tleqa~ea~~------------agaDiI~LD-n~~~e~l~~av~~~~~~----~~~-~~leaSGGI~~~ni~~yA 254 (284)
T PRK06096 193 VVEADTPKEAIAALR------------AQPDVLQLD-KFSPQQATEIAQIAPSL----APH-CTLSLAGGINLNTLKNYA 254 (284)
T ss_pred EEECCCHHHHHHHHH------------cCCCEEEEC-CCCHHHHHHHHHHhhcc----CCC-eEEEEECCCCHHHHHHHH
Confidence 345689999988874 258999999 56555555556655432 122 467889999999999999
Q ss_pred HcCCCEE
Q 001330 1069 DAGMDFH 1075 (1099)
Q Consensus 1069 ~aG~ddy 1075 (1099)
+.|+|-.
T Consensus 255 ~tGvD~I 261 (284)
T PRK06096 255 DCGIRLF 261 (284)
T ss_pred hcCCCEE
Confidence 9999874
No 284
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=29.83 E-value=5.7e+02 Score=27.54 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=41.0
Q ss_pred CccEEEEecCCCC-------CCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1017 PYDYIMMDCEMPV-------MNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1017 ~~DlIlmDi~MP~-------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
..|.|+.+-.-++ ...+++++++|+. ..+||++.-+-...++..++++.|+|+.+.
T Consensus 122 gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~-----~~~Pvi~~GGI~~~~~v~~~l~~GadgV~v 184 (236)
T cd04730 122 GADALVAQGAEAGGHRGTFDIGTFALVPEVRDA-----VDIPVIAAGGIADGRGIAAALALGADGVQM 184 (236)
T ss_pred CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH-----hCCCEEEECCCCCHHHHHHHHHcCCcEEEE
Confidence 4788877643211 2457788888853 247999988877789999999999998754
No 285
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=29.60 E-value=3.2e+02 Score=28.60 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=26.2
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhH
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNL 745 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~ 745 (1099)
+++++.+++..+..+...+.. .|..+..+.+....
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~-~g~~v~~~~~~~~~ 36 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQD-AGHQVDAAEDAKEA 36 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHH-CCCEEEEECCHHHH
Confidence 467788888888888888876 78887776665543
No 286
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=29.43 E-value=1e+02 Score=32.74 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=25.9
Q ss_pred CCccEEEEecc------CCHHHHHHHHHcCCCEEEeCCCCHHHHH
Q 001330 1048 VHIPIIALTAH------AMAGVASKIVDAGMDFHLTKPLQKDKLL 1086 (1099)
Q Consensus 1048 ~~ipIIalTa~------~~~~~~~~~l~aG~ddyL~KPi~~~~L~ 1086 (1099)
..+|||+|+-+ .....++.+.++|+++||.--+.++|-.
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~ 138 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAE 138 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHH
Confidence 45677777643 3455677777888888887766666543
No 287
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=29.41 E-value=7.8e+02 Score=28.47 Aligned_cols=108 Identities=19% Similarity=0.106 Sum_probs=67.7
Q ss_pred EeCCHHHHHHHHHHHhhcCCeE-E-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC-----HHHHHHHHh
Q 001330 968 VEDDAIVLKVTSAVLGKLGAKF-E-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN-----GWEATRLIR 1040 (1099)
Q Consensus 968 VdDd~~~~~~l~~~L~~~G~~v-~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md-----G~e~~r~IR 1040 (1099)
..|.....+..+.+. +.||.| . ++.|..+|-++.. ..+ +.+|=+--|... --+.++.++
T Consensus 180 lpd~~~~v~aa~~L~-~~Gf~v~~yc~~d~~~a~~l~~------------~g~-~avmPl~~pIGsg~gv~~p~~i~~~~ 245 (326)
T PRK11840 180 YPDMVETLKATEILV-KEGFQVMVYCSDDPIAAKRLED------------AGA-VAVMPLGAPIGSGLGIQNPYTIRLIV 245 (326)
T ss_pred ccCHHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHh------------cCC-EEEeeccccccCCCCCCCHHHHHHHH
Confidence 344444555555544 469987 4 4466666644431 122 444433333222 345677777
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL-----TKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL-----~KPi~~~~L~~~l~~i~~ 1094 (1099)
+. ..+|||+=.+-...++...+++.|+|+.| .|-=++-.+.++.+...+
T Consensus 246 e~-----~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 246 EG-----ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred Hc-----CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 54 35899988888999999999999999974 566777777776665433
No 288
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=28.86 E-value=2.3e+02 Score=27.07 Aligned_cols=74 Identities=12% Similarity=0.028 Sum_probs=47.0
Q ss_pred eCCHHHHHHHHHHHhhcCCeEEEEC---CHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC-HHHHHHHHhcccc
Q 001330 969 EDDAIVLKVTSAVLGKLGAKFEVCR---NGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN-GWEATRLIRKEEE 1044 (1099)
Q Consensus 969 dDd~~~~~~l~~~L~~~G~~v~~a~---~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md-G~e~~r~IR~~~~ 1044 (1099)
|.++.....+...|++.|+++.... ...+.++.+. ...||+|.+.+.+.... .++.++.+|+..+
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~-----------~~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p 78 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAK-----------EEDADVVGLSALSTTHMEAMKLVIEALKELG 78 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHH-----------HcCCCEEEEecchHhHHHHHHHHHHHHHhcC
Confidence 5566777888899999999988653 3344444442 24799999998876543 3455556654321
Q ss_pred ccCCCccEEEEe
Q 001330 1045 QYDVHIPIIALT 1056 (1099)
Q Consensus 1045 ~~~~~ipIIalT 1056 (1099)
.+++|++=-
T Consensus 79 ---~~~~ivvGG 87 (125)
T cd02065 79 ---IDIPVVVGG 87 (125)
T ss_pred ---CCCeEEEeC
Confidence 146666543
No 289
>PRK11173 two-component response regulator; Provisional
Probab=28.85 E-value=3.6e+02 Score=28.65 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=27.5
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhH
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNL 745 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~ 745 (1099)
.+++++.++...+..+...++. .|..+..+.+....
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~-~g~~v~~~~~~~~~ 39 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEA-EGYDVFEATDGAEM 39 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHH-cCCEEEEECCHHHH
Confidence 3678888888888889888877 78887777666543
No 290
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=28.19 E-value=2.8e+02 Score=31.25 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=56.8
Q ss_pred EEEEeCCHHHHHHHHHHH----hhcCCeE---EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHH
Q 001330 965 FLVVEDDAIVLKVTSAVL----GKLGAKF---EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATR 1037 (1099)
Q Consensus 965 ILvVdDd~~~~~~l~~~L----~~~G~~v---~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r 1037 (1099)
|||=|.+-...--++..+ +..++.. +.+++-+|+.+++. ..+|+|++|- |+.-.=-++.+
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~------------agaDiImLDN-m~~e~~~~av~ 227 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALE------------AGADIIMLDN-MSPEELKEAVK 227 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH------------cCCCEEEecC-CCHHHHHHHHH
Confidence 444444443333233333 3345532 45799999988884 2689999995 33322333444
Q ss_pred HHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEE
Q 001330 1038 LIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075 (1099)
Q Consensus 1038 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddy 1075 (1099)
.+.. ..-.++-.|+.-..+....+.+.|+|-+
T Consensus 228 ~l~~------~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 228 LLGL------AGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred Hhcc------CCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 4311 1124677899999999999999999865
No 291
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=28.15 E-value=3.6e+02 Score=28.30 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=25.4
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhh
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKN 744 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~ 744 (1099)
+++++.++...+..+...+.. .|..+..+.+...
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~-~g~~v~~~~~~~~ 35 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTE-AGFVVDLADNGLN 35 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHH-CCCEEEEECCHHH
Confidence 467788888888888888876 6877776665543
No 292
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.93 E-value=2.1e+02 Score=32.58 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=45.7
Q ss_pred EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHH
Q 001330 990 EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVD 1069 (1099)
Q Consensus 990 ~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~ 1069 (1099)
..+.|.+||.+.+. ..+|+|.+| .|...+=-++++.+|+. .+++|+. .++.-..+...+..+
T Consensus 201 VEv~tleea~eA~~------------~GaD~I~LD-n~~~e~l~~av~~~~~~----~~~i~le-AsGGIt~~ni~~ya~ 262 (288)
T PRK07428 201 VETETLEQVQEALE------------YGADIIMLD-NMPVDLMQQAVQLIRQQ----NPRVKIE-ASGNITLETIRAVAE 262 (288)
T ss_pred EECCCHHHHHHHHH------------cCCCEEEEC-CCCHHHHHHHHHHHHhc----CCCeEEE-EECCCCHHHHHHHHH
Confidence 45789999998874 368999999 34333333344444432 2346544 556667888999999
Q ss_pred cCCCEE
Q 001330 1070 AGMDFH 1075 (1099)
Q Consensus 1070 aG~ddy 1075 (1099)
.|+|..
T Consensus 263 tGvD~I 268 (288)
T PRK07428 263 TGVDYI 268 (288)
T ss_pred cCCCEE
Confidence 999975
No 293
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.91 E-value=1.5e+02 Score=32.43 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=43.8
Q ss_pred cEEEEecCCCCC-CH--HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1019 DYIMMDCEMPVM-NG--WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1019 DlIlmDi~MP~m-dG--~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
.+|++|+..-++ .| +++++++++. ..+|+|+-.+-.+.++..++++.|++..+.
T Consensus 164 ~ii~tdi~~dGt~~G~~~~li~~l~~~-----~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 164 GIIYTDIAKDGKMSGPNFELTGQLVKA-----TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred EEEEecccCcCCCCccCHHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 699999987654 33 5677888753 358999999999999999999999999875
No 294
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=27.48 E-value=3.3e+02 Score=28.51 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=25.6
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhh
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKN 744 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~ 744 (1099)
+++++.+++..+..+..++.. .|..+..+.+...
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~~~~~ 36 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEM-EGFNVIVAHDGEQ 36 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHH-CCCEEEEeCCHHH
Confidence 577888888888889888877 6877776555443
No 295
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=27.39 E-value=4.5e+02 Score=32.72 Aligned_cols=93 Identities=14% Similarity=0.132 Sum_probs=52.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCH-HHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNG-KEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g-~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
+..+.++|.|+...+.+ ++.|+.+...+-. .++++.. .-...|.++.-..-+..+ ..++..+|
T Consensus 440 g~~vvvId~d~~~~~~~----~~~g~~~i~GD~~~~~~L~~a-----------~i~~a~~viv~~~~~~~~-~~iv~~~~ 503 (558)
T PRK10669 440 GIPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLA-----------HLDCARWLLLTIPNGYEA-GEIVASAR 503 (558)
T ss_pred CCCEEEEECCHHHHHHH----HHCCCeEEEcCCCCHHHHHhc-----------CccccCEEEEEcCChHHH-HHHHHHHH
Confidence 34578888877654443 3456666554322 2333322 233678777654322222 23555566
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEE
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL 1076 (1099)
+.. ++.+||+-+. +.+......++|+|..+
T Consensus 504 ~~~----~~~~iiar~~--~~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 504 EKR----PDIEIIARAH--YDDEVAYITERGANQVV 533 (558)
T ss_pred HHC----CCCeEEEEEC--CHHHHHHHHHcCCCEEE
Confidence 542 3568887764 45666677889999777
No 296
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.35 E-value=4.4e+02 Score=29.76 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=45.4
Q ss_pred EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHH
Q 001330 990 EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVD 1069 (1099)
Q Consensus 990 ~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~ 1069 (1099)
..+.+-+||.+.+. ..+|+|.+|= |+--++.+.++.. ....+++ +|..++.-+.+...++.+
T Consensus 187 VEv~tleea~~A~~------------~GaDiI~LDn----~~~e~l~~~v~~~-~~~~~~~-~ieAsGgIt~~ni~~ya~ 248 (273)
T PRK05848 187 IECESLEEAKNAMN------------AGADIVMCDN----MSVEEIKEVVAYR-NANYPHV-LLEASGNITLENINAYAK 248 (273)
T ss_pred EEeCCHHHHHHHHH------------cCCCEEEECC----CCHHHHHHHHHHh-hccCCCe-EEEEECCCCHHHHHHHHH
Confidence 45789999998884 2589999874 3322332333221 1112233 566788889999999999
Q ss_pred cCCCEEE
Q 001330 1070 AGMDFHL 1076 (1099)
Q Consensus 1070 aG~ddyL 1076 (1099)
.|+|.+.
T Consensus 249 ~GvD~Is 255 (273)
T PRK05848 249 SGVDAIS 255 (273)
T ss_pred cCCCEEE
Confidence 9999763
No 297
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=27.05 E-value=80 Score=33.30 Aligned_cols=90 Identities=20% Similarity=0.215 Sum_probs=53.6
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC--CCCCCHHHHHHHHhcc
Q 001330 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE--MPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 965 ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~--MP~mdG~e~~r~IR~~ 1042 (1099)
||+||.....-..+...|.+.|+++.++.+.+..++.+. ...||.|++--- -|..++. ..+.+|..
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~-----------~~~~d~iils~GPg~p~~~~~-~~~~~~~~ 69 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADID-----------ALKPQKIVISPGPCTPDEAGI-SLDVIRHY 69 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-----------hcCCCEEEEcCCCCChHHCCc-cHHHHHHh
Confidence 899999998888899999999999988876542233332 125776666311 1222232 22333332
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCE
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDF 1074 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~dd 1074 (1099)
...+||+.+. -..+.-|...|+.-
T Consensus 70 ----~~~~PiLGIC----lG~Q~la~a~Gg~v 93 (187)
T PRK08007 70 ----AGRLPILGVC----LGHQAMAQAFGGKV 93 (187)
T ss_pred ----cCCCCEEEEC----HHHHHHHHHcCCEE
Confidence 1358999876 23444455556543
No 298
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=26.80 E-value=4.1e+02 Score=27.45 Aligned_cols=34 Identities=3% Similarity=-0.003 Sum_probs=24.6
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhh
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKN 744 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~ 744 (1099)
+++++.++...+..+..++.. .|..+..+.+...
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~~~~ 35 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQT-EGYACDCASTARE 35 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHH-CCCEEEEeCCHHH
Confidence 467788888888888888877 6777666555443
No 299
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=26.45 E-value=1.4e+02 Score=34.24 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=13.6
Q ss_pred eeccceeeEEEecCCc
Q 001330 120 LGLDGLSFSYFNDGDQ 135 (1099)
Q Consensus 120 ~~~~~~~~~~~~~~~~ 135 (1099)
.|.||.||.|+.+|+|
T Consensus 91 yG~DGYFF~YD~~G~N 106 (459)
T COG4564 91 YGSDGYFFVYDYQGTN 106 (459)
T ss_pred cCCCceEEEEecCCcc
Confidence 3899999999999753
No 300
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=26.35 E-value=5.4e+02 Score=24.06 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=30.1
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchh
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEK 743 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~ 743 (1099)
.+.++++++++...+..+...+.. .|..+..+.++.
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~-~g~~v~~a~~g~ 39 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLED-LGYEVVEAADGE 39 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHH-cCCeEEEeCChH
Confidence 456788888989999999999998 788888887774
No 301
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=26.34 E-value=1.3e+02 Score=31.74 Aligned_cols=76 Identities=21% Similarity=0.233 Sum_probs=46.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEE-ecC-CCCCCHHHHHHHHhcc
Q 001330 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM-DCE-MPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 965 ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlm-Di~-MP~mdG~e~~r~IR~~ 1042 (1099)
||+||.....-..+...|++.|+++.+..+-...++.+. ...||.|++ -=- -|..++.+ .+.+|..
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~-----------~~~~d~iilsgGpg~p~~~~~~-~~~i~~~ 69 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIE-----------ALLPLLIVISPGPCTPNEAGIS-LEAIRHF 69 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHH-----------hcCCCEEEEcCCCCChhhcchh-HHHHHHh
Confidence 899999999989899999999999887764432233332 125785555 221 11122322 3444443
Q ss_pred ccccCCCccEEEEe
Q 001330 1043 EEQYDVHIPIIALT 1056 (1099)
Q Consensus 1043 ~~~~~~~ipIIalT 1056 (1099)
. ..+||+.+.
T Consensus 70 -~---~~~PvLGIC 79 (188)
T TIGR00566 70 -A---GKLPILGVC 79 (188)
T ss_pred -c---cCCCEEEEC
Confidence 1 247999876
No 302
>PRK12704 phosphodiesterase; Provisional
Probab=26.10 E-value=71 Score=39.41 Aligned_cols=44 Identities=7% Similarity=0.110 Sum_probs=38.3
Q ss_pred cEEEEeccCCHH--HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1051 PIIALTAHAMAG--VASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1051 pIIalTa~~~~~--~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
.+|++|+.+... ....+++.|+.|+..||+..+++...++.-++
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVD 296 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 478899988765 88899999999999999999999999987554
No 303
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=26.09 E-value=1.9e+02 Score=30.77 Aligned_cols=110 Identities=19% Similarity=0.206 Sum_probs=55.8
Q ss_pred CEEEEEeCCH---HHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH--HHHHH
Q 001330 963 KKFLVVEDDA---IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG--WEATR 1037 (1099)
Q Consensus 963 ~~ILvVdDd~---~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG--~e~~r 1037 (1099)
++|.+|--|. --.+.++.+-+..|..+..+.+..+..+.+.+.++.. ....+|+||+|- |+++- .+.++
T Consensus 30 ~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~----~~~~~D~vlIDT--~Gr~~~d~~~~~ 103 (196)
T PF00448_consen 30 KKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF----RKKGYDLVLIDT--AGRSPRDEELLE 103 (196)
T ss_dssp --EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH----HHTTSSEEEEEE---SSSSTHHHHHH
T ss_pred ccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH----hhcCCCEEEEec--CCcchhhHHHHH
Confidence 4555554332 3445666777777888877764332212111111111 123699999997 55443 34555
Q ss_pred HHhccccccCCCccEEEEeccCCHHHHHH---HHH-cCCCEEE-eC
Q 001330 1038 LIRKEEEQYDVHIPIIALTAHAMAGVASK---IVD-AGMDFHL-TK 1078 (1099)
Q Consensus 1038 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~---~l~-aG~ddyL-~K 1078 (1099)
++++......+.-.++++++....++... ..+ .+.++.+ +|
T Consensus 104 el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTK 149 (196)
T PF00448_consen 104 ELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTK 149 (196)
T ss_dssp HHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEES
T ss_pred HHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEe
Confidence 56553332233345667777765555333 333 4677764 44
No 304
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=25.80 E-value=3.9e+02 Score=28.44 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=26.1
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhh
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKN 744 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~ 744 (1099)
+++++.++...+..+..++.. .|..+..+.+...
T Consensus 3 ~iLivedd~~~~~~l~~~L~~-~g~~v~~~~~~~~ 36 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAK-HDIDVTVEPRGDR 36 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHH-cCCEEEEeCCHHH
Confidence 577888888888889888877 7887777665543
No 305
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.69 E-value=6.8e+02 Score=27.08 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=58.3
Q ss_pred HHHhhcCC-eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEecc
Q 001330 980 AVLGKLGA-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAH 1058 (1099)
Q Consensus 980 ~~L~~~G~-~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~ 1058 (1099)
..|.+.+. -|....+.++|+...+... + --+=++.+.|-.-+++++++.+|+.... .++ -+|..-.-
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~----~------~Gi~~iEit~~~~~a~~~i~~l~~~~~~-~p~-~~vGaGTV 75 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVI----K------GGIKAIEVTYTNPFASEVIKELVELYKD-DPE-VLIGAGTV 75 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHH----H------CCCCEEEEECCCccHHHHHHHHHHHcCC-CCC-eEEeeeeC
Confidence 44555553 4556677777777664321 1 1233566666677788999999864211 011 13444444
Q ss_pred CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 001330 1059 AMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089 (1099)
Q Consensus 1059 ~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l 1089 (1099)
.+.++..++.++|++ |+.-|.--.++.+..
T Consensus 76 ~~~~~~~~a~~aGA~-FivsP~~~~~v~~~~ 105 (213)
T PRK06552 76 LDAVTARLAILAGAQ-FIVSPSFNRETAKIC 105 (213)
T ss_pred CCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 577888999999998 555576666665544
No 306
>PRK05637 anthranilate synthase component II; Provisional
Probab=25.63 E-value=1.9e+02 Score=31.18 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=47.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEE--ecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM--DCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlm--Di~MP~mdG~e~~r~IR 1040 (1099)
.+||++|-..-+...+...|++.|+.+.++.+... ++.+. ...||.|++ .-.-|...+ +..+.++
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~-----------~~~~~~iIlsgGPg~~~d~~-~~~~li~ 68 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEIL-----------AANPDLICLSPGPGHPRDAG-NMMALID 68 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHH-----------hcCCCEEEEeCCCCCHHHhh-HHHHHHH
Confidence 47999999888888899999999999888766432 22221 125787777 222222222 2233443
Q ss_pred ccccccCCCccEEEEe
Q 001330 1041 KEEEQYDVHIPIIALT 1056 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalT 1056 (1099)
... ..+||+.+.
T Consensus 69 ~~~----~~~PiLGIC 80 (208)
T PRK05637 69 RTL----GQIPLLGIC 80 (208)
T ss_pred HHh----CCCCEEEEc
Confidence 211 247998876
No 307
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.55 E-value=1.9e+02 Score=32.30 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=9.2
Q ss_pred HHHHHHcCCCEEEeCCCC
Q 001330 1064 ASKIVDAGMDFHLTKPLQ 1081 (1099)
Q Consensus 1064 ~~~~l~aG~ddyL~KPi~ 1081 (1099)
..+|.++|+|+.|.--+.
T Consensus 115 ~~~~~~~GvdGlivpDLP 132 (265)
T COG0159 115 LRRAKEAGVDGLLVPDLP 132 (265)
T ss_pred HHHHHHcCCCEEEeCCCC
Confidence 445555555555554333
No 308
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.52 E-value=5.4e+02 Score=27.65 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=34.3
Q ss_pred EecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 001330 1023 MDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089 (1099)
Q Consensus 1023 mDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l 1089 (1099)
+.+.|-.-+.++.++++|+.. ++ -+|..-.-.+.++..++.++|++ |+.-|.--.++.+..
T Consensus 33 iEit~~tp~a~~~I~~l~~~~----~~-~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~vi~~a 93 (201)
T PRK06015 33 IEITLRTPAALDAIRAVAAEV----EE-AIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQELLAAA 93 (201)
T ss_pred EEEeCCCccHHHHHHHHHHHC----CC-CEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 344444555667777776532 12 23333334567777888888887 444565555555443
No 309
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=25.48 E-value=2.5e+02 Score=30.43 Aligned_cols=88 Identities=14% Similarity=0.057 Sum_probs=57.4
Q ss_pred HHHHhhcCCe--EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEE--Ee-cCCCCCCHHHHHHHHhccccccCCCccEE
Q 001330 979 SAVLGKLGAK--FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM--MD-CEMPVMNGWEATRLIRKEEEQYDVHIPII 1053 (1099)
Q Consensus 979 ~~~L~~~G~~--v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIl--mD-i~MP~mdG~e~~r~IR~~~~~~~~~ipII 1053 (1099)
.+.|++.|.. ++.+.+..+|+..... ..|+|= +. +.--+.||+++++.+++....++.+++|+
T Consensus 94 ~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~a------------Ga~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIl 161 (213)
T TIGR00875 94 VKILKKEGIKTNVTLVFSAAQALLAAKA------------GATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVI 161 (213)
T ss_pred HHHHHHCCCceeEEEecCHHHHHHHHHc------------CCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 3456777864 5678999999887742 123221 10 00124689999999988766666667755
Q ss_pred EEeccCCHHHHHHHHHcCCCEEEeCC
Q 001330 1054 ALTAHAMAGVASKIVDAGMDFHLTKP 1079 (1099)
Q Consensus 1054 alTa~~~~~~~~~~l~aG~ddyL~KP 1079 (1099)
+-| --...+..++..+|+|.+-.-|
T Consensus 162 aAS-~r~~~~v~~~~~~G~d~vTip~ 186 (213)
T TIGR00875 162 AAS-VRHPRHVLEAALIGADIATMPL 186 (213)
T ss_pred Eec-cCCHHHHHHHHHcCCCEEEcCH
Confidence 444 4567788888999999764433
No 310
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=25.25 E-value=1.7e+02 Score=30.95 Aligned_cols=53 Identities=23% Similarity=0.387 Sum_probs=38.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCC--eEEE-ECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEec
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGA--KFEV-CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~--~v~~-a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi 1025 (1099)
.++++||-|.....++++-++.+|+ .+.. ..|...++..+. ...+||+|++|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~----------~~~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG----------TREPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC----------CCCcccEEEeCC
Confidence 5799999999999999999998883 3433 344444544442 223699999996
No 311
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=25.21 E-value=4e+02 Score=28.46 Aligned_cols=37 Identities=5% Similarity=0.099 Sum_probs=25.7
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCce-EEEecchhhH
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIK-VTIVKQEKNL 745 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~-v~~~~~~~~~ 745 (1099)
.+++++++++..+..+..+++...++. +..+.+....
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~a 42 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQA 42 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHH
Confidence 467888888888888988888645664 4455555433
No 312
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=25.12 E-value=2.1e+02 Score=30.55 Aligned_cols=94 Identities=17% Similarity=0.277 Sum_probs=61.5
Q ss_pred HHHHHHHhhcCCeEEEE--CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-----CCHHHHHHHHhccccccCC
Q 001330 976 KVTSAVLGKLGAKFEVC--RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-----MNGWEATRLIRKEEEQYDV 1048 (1099)
Q Consensus 976 ~~l~~~L~~~G~~v~~a--~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-----mdG~e~~r~IR~~~~~~~~ 1048 (1099)
.-....|++.|+.+... ..+...++.+.. .+||.|=+|..+.. .....+++.+...... .
T Consensus 135 ~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~-----------~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~--~ 201 (240)
T cd01948 135 LATLRRLRALGVRIALDDFGTGYSSLSYLKR-----------LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHS--L 201 (240)
T ss_pred HHHHHHHHHCCCeEEEeCCCCcHhhHHHHHh-----------CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHH--C
Confidence 33455577889987764 455666666632 36999999976431 2335556666544322 2
Q ss_pred CccEEEEeccCCHHHHHHHHHcCCCE----EEeCCCCHH
Q 001330 1049 HIPIIALTAHAMAGVASKIVDAGMDF----HLTKPLQKD 1083 (1099)
Q Consensus 1049 ~ipIIalTa~~~~~~~~~~l~aG~dd----yL~KPi~~~ 1083 (1099)
.+++ +.++-.+.+....+.+.|++. |+.||...+
T Consensus 202 ~~~v-ia~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~~ 239 (240)
T cd01948 202 GLKV-VAEGVETEEQLELLRELGCDYVQGYLFSRPLPAE 239 (240)
T ss_pred CCeE-EEEecCCHHHHHHHHHcCCCeeeeceeccCCCCC
Confidence 3444 467788889999999999964 678887653
No 313
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=25.08 E-value=4.1e+02 Score=34.33 Aligned_cols=103 Identities=12% Similarity=0.177 Sum_probs=72.3
Q ss_pred HHHHHHHhhcCCeEEE--ECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC-----CCCHHHHHHHHhccccccCC
Q 001330 976 KVTSAVLGKLGAKFEV--CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP-----VMNGWEATRLIRKEEEQYDV 1048 (1099)
Q Consensus 976 ~~l~~~L~~~G~~v~~--a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP-----~mdG~e~~r~IR~~~~~~~~ 1048 (1099)
......|++.|+.+.. +.+|...+..+. ..++|.|=+|..+= ......+++.|...... .
T Consensus 681 ~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~-----------~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 747 (799)
T PRK11359 681 FKRIQILRDMGVGLSVDDFGTGFSGLSRLV-----------SLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQS--L 747 (799)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHh-----------hCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHH--C
Confidence 3344568889998866 567777777774 34799999997542 12234456666543322 2
Q ss_pred CccEEEEeccCCHHHHHHHHHcCCCE----EEeCCCCHHHHHHHHHHH
Q 001330 1049 HIPIIALTAHAMAGVASKIVDAGMDF----HLTKPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1049 ~ipIIalTa~~~~~~~~~~l~aG~dd----yL~KPi~~~~L~~~l~~i 1092 (1099)
++.+| .++-.+.+....+.+.|++. |+.||...++|...+++.
T Consensus 748 ~i~vi-a~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~ 794 (799)
T PRK11359 748 NLTVV-AEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSV 794 (799)
T ss_pred CCeEE-EEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhc
Confidence 35544 56778888899999999985 699999999999887765
No 314
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=24.78 E-value=4.2e+02 Score=28.32 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=52.2
Q ss_pred HHHhhcCC-eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEecc
Q 001330 980 AVLGKLGA-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAH 1058 (1099)
Q Consensus 980 ~~L~~~G~-~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~ 1058 (1099)
+.|++.+. -|....+.++|++..+...+ .. +=++.+.|-.-+.+++++.+|+..+ + -+|..-.-
T Consensus 3 ~~l~~~~iiaVir~~~~~~a~~~~~al~~--------gG--i~~iEiT~~t~~a~~~I~~l~~~~p----~-~~vGAGTV 67 (196)
T PF01081_consen 3 ERLKENKIIAVIRGDDPEDAVPIAEALIE--------GG--IRAIEITLRTPNALEAIEALRKEFP----D-LLVGAGTV 67 (196)
T ss_dssp HHHHHHSEEEEETTSSGGGHHHHHHHHHH--------TT----EEEEETTSTTHHHHHHHHHHHHT----T-SEEEEES-
T ss_pred HHHhhCCEEEEEEcCCHHHHHHHHHHHHH--------CC--CCEEEEecCCccHHHHHHHHHHHCC----C-CeeEEEec
Confidence 34555553 23444566666665543211 12 3345666667788999999987532 2 24444445
Q ss_pred CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 001330 1059 AMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089 (1099)
Q Consensus 1059 ~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l 1089 (1099)
.+.++..++.++|++-.++ |.--+++.+..
T Consensus 68 ~~~e~a~~a~~aGA~FivS-P~~~~~v~~~~ 97 (196)
T PF01081_consen 68 LTAEQAEAAIAAGAQFIVS-PGFDPEVIEYA 97 (196)
T ss_dssp -SHHHHHHHHHHT-SEEEE-SS--HHHHHHH
T ss_pred cCHHHHHHHHHcCCCEEEC-CCCCHHHHHHH
Confidence 6788999999999985555 55444554443
No 315
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=24.73 E-value=1.5e+02 Score=33.53 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=43.9
Q ss_pred HHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEE------EeCCCCHHHHHHHHHHHHHH
Q 001330 1032 GWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH------LTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1032 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddy------L~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.++.++++|+. .++|||+..+-.+.++..+++++|+|.. +.-|.-..++.+-+.+.++.
T Consensus 219 ~~~~i~~i~~~-----~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~ 283 (296)
T cd04740 219 ALRMVYQVYKA-----VEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDE 283 (296)
T ss_pred HHHHHHHHHHh-----cCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHH
Confidence 45778888753 2589999999999999999999999874 44566666666666655543
No 316
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=24.59 E-value=1.6e+02 Score=34.11 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=40.0
Q ss_pred ccEEEEecCCCCCCH-HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEE
Q 001330 1018 YDYIMMDCEMPVMNG-WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076 (1099)
Q Consensus 1018 ~DlIlmDi~MP~mdG-~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL 1076 (1099)
+|+|.+|+.-+..+. .+++++||+.. +.+|||+=. -.+.++...+.++|+|...
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~----p~~~vi~g~-V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHL----PETFVIAGN-VGTPEAVRELENAGADATK 166 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhC----CCCeEEEEe-cCCHHHHHHHHHcCcCEEE
Confidence 599999999976544 47788998642 346666521 2378889999999999965
No 317
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=24.55 E-value=2.8e+02 Score=29.55 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=60.2
Q ss_pred HHHHHHhhcCCeEEEE--CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-----CCHHHHHHHHhccccccCCC
Q 001330 977 VTSAVLGKLGAKFEVC--RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-----MNGWEATRLIRKEEEQYDVH 1049 (1099)
Q Consensus 977 ~l~~~L~~~G~~v~~a--~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-----mdG~e~~r~IR~~~~~~~~~ 1049 (1099)
.....|++.|+.+..- ..+...++.+. ..+||.|=+|..+-. .....+++.+...... ..
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~-----------~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~--~~ 203 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLK-----------RLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQK--LG 203 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHH-----------hCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHH--CC
Confidence 4456678889887653 45555566663 247999999976431 1134556666544322 23
Q ss_pred ccEEEEeccCCHHHHHHHHHcCCCE----EEeCCCCHH
Q 001330 1050 IPIIALTAHAMAGVASKIVDAGMDF----HLTKPLQKD 1083 (1099)
Q Consensus 1050 ipIIalTa~~~~~~~~~~l~aG~dd----yL~KPi~~~ 1083 (1099)
+.+ +.++-.+.++...+.+.|++. |+.||...+
T Consensus 204 ~~v-ia~gVe~~~~~~~l~~~Gi~~~QG~~~~~p~~~~ 240 (241)
T smart00052 204 LQV-VAEGVETPEQLDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred CeE-EEecCCCHHHHHHHHHcCCCEEeeceeccCCCCC
Confidence 444 467778888999999999974 688887653
No 318
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=24.39 E-value=4.5e+02 Score=33.12 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=57.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHH-HHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGK-EAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~-eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
+..+.++|.|+...+.+ ++.|+.+...+-.+ +.++.. .-...|+++.-..-+ .+-..++..+|
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~a-----------gi~~A~~vv~~~~d~-~~n~~i~~~~r 486 (601)
T PRK03659 423 KMRITVLERDISAVNLM----RKYGYKVYYGDATQLELLRAA-----------GAEKAEAIVITCNEP-EDTMKIVELCQ 486 (601)
T ss_pred CCCEEEEECCHHHHHHH----HhCCCeEEEeeCCCHHHHHhc-----------CCccCCEEEEEeCCH-HHHHHHHHHHH
Confidence 34678888888765543 34577665543222 222222 233577777765433 23455667777
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeC
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~K 1078 (1099)
+. .++.+||+-+. +.+...+..++|+|..+.-
T Consensus 487 ~~----~p~~~IiaRa~--~~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 487 QH----FPHLHILARAR--GRVEAHELLQAGVTQFSRE 518 (601)
T ss_pred HH----CCCCeEEEEeC--CHHHHHHHHhCCCCEEEcc
Confidence 64 34678887653 4567778889999987643
No 319
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=24.36 E-value=2e+02 Score=31.67 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=21.6
Q ss_pred ceEEccHHHHHHHHHHHHHhHhhccCC
Q 001330 505 CHVRGDRVKLKQILCNLVSNSMKFTSE 531 (1099)
Q Consensus 505 ~~v~gD~~rL~QIL~NLL~NAiKfT~~ 531 (1099)
..+.|||.|..+|-. |++|+-+-+..
T Consensus 20 vilpGdP~R~~~iA~-lld~~~~va~~ 45 (248)
T COG2820 20 VILPGDPERVEKIAK-LLDNPVLVASN 45 (248)
T ss_pred EEecCCHHHHHHHHH-Hhccchhhhhc
Confidence 467899999999988 99999876643
No 320
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=24.35 E-value=5e+02 Score=23.02 Aligned_cols=72 Identities=19% Similarity=0.209 Sum_probs=44.3
Q ss_pred hHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHHHHHHHH
Q 001330 401 ASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDM 480 (1099)
Q Consensus 401 ~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll~~v~~~ 480 (1099)
+.|-+|+=|..|.+++.+-..... +++.++.+..+......+..+ .+.|--+ + ....+++.+++++++..
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~-~~e~~~~L~~~~~RI~aia~v-h~~L~~~----~----~~~~v~l~~yl~~L~~~ 71 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSE-DPEAREALEDAQNRIQAIALV-HEQLYQS----E----DLSEVDLREYLEELCED 71 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHH-HHHHhcC----C----CCCeecHHHHHHHHHHH
Confidence 469999999999999987655433 344455554444443333222 2222111 1 23578999999999876
Q ss_pred HH
Q 001330 481 YY 482 (1099)
Q Consensus 481 ~~ 482 (1099)
+.
T Consensus 72 l~ 73 (76)
T PF07568_consen 72 LR 73 (76)
T ss_pred HH
Confidence 64
No 321
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=24.35 E-value=2.4e+02 Score=26.08 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHHHHHHHHHHHhHHh
Q 001330 431 ENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIK 487 (1099)
Q Consensus 431 ~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~ 487 (1099)
++-+.+.+.+++|+.++|+++.......+..... ...++.+-.+.+++..-..+++
T Consensus 25 ~f~~~ld~~s~rll~l~n~ll~~~~~~~~~~~~~-~~~d~d~~~~~vvd~~D~LlEk 80 (91)
T PF08066_consen 25 EFAESLDEQSQRLLSLINSLLKSAGSKSNISSPD-DVDDVDERWDSVVDVNDSLLEK 80 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCCC-ccccHHHHHHHHHHHHHHHHHH
Confidence 3446788899999999999999887665443322 3445666666666555554444
No 322
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=24.34 E-value=4.3e+02 Score=30.41 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=66.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCe--EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAK--FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~--v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+++++.+.+. ...+...+++.|.. +.......+..+.+. ..|+.++= ...+.=|.-+++.+.
T Consensus 230 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~-------------~adi~v~p-S~~Eg~~~~~lEAma 294 (374)
T TIGR03088 230 LRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQ-------------ALDLFVLP-SLAEGISNTILEAMA 294 (374)
T ss_pred eEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHH-------------hcCEEEec-cccccCchHHHHHHH
Confidence 57888877654 35567777777653 333333334334442 35776642 222334566777765
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
. .+|||+ |.... ..+.++.|-++++..|-+.+++.+.|..+++.
T Consensus 295 ~-------G~Pvv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 338 (374)
T TIGR03088 295 S-------GLPVIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVSD 338 (374)
T ss_pred c-------CCCEEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 2 479886 43322 23455678889999999999999999887654
No 323
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=24.29 E-value=4.3e+02 Score=27.27 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=23.6
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchh
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEK 743 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~ 743 (1099)
+++++.++...+..+..++.. .|..+..+.+..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~~~ 34 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSK-MGFSVDWFTQGR 34 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHH-CCCEEEEeCCHH
Confidence 366777777888888888876 677776655444
No 324
>PRK07695 transcriptional regulator TenI; Provisional
Probab=24.14 E-value=6e+02 Score=26.84 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=37.7
Q ss_pred CccEEEEecCCCC-------CCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEE
Q 001330 1017 PYDYIMMDCEMPV-------MNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075 (1099)
Q Consensus 1017 ~~DlIlmDi~MP~-------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddy 1075 (1099)
..|.|+..-..|. ..|++.++++++. ..+||+++-+- ..+...++++.|++.+
T Consensus 115 Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~-----~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 115 GADYVVYGHVFPTDCKKGVPARGLEELSDIARA-----LSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh-----CCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 4677765532221 2367888888753 25899988777 7888999999999987
No 325
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=24.09 E-value=4.3e+02 Score=27.57 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=24.9
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchh
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEK 743 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~ 743 (1099)
+++++.+++..+..+...+.. .|..+..+.+..
T Consensus 3 ~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~ 35 (225)
T PRK10529 3 NVLIVEDEQAIRRFLRTALEG-DGMRVFEAETLQ 35 (225)
T ss_pred EEEEEeCCHHHHHHHHHHHHH-CCCEEEEeCCHH
Confidence 577888888888888888876 677776665544
No 326
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=24.06 E-value=6e+02 Score=23.77 Aligned_cols=61 Identities=7% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 001330 340 LSLMLLVLMFIAGVISLGLFIILIAKAAKREMFLCAALIKQMNATEQAERKSMNKTFALAKA 401 (1099)
Q Consensus 340 ~~~~l~~~~~i~~~i~~~~~~~~~~~~~~~e~~l~~~l~~~~~a~~~ae~~~~~k~~fla~~ 401 (1099)
....++.+++.++++.++..+|--.+..+-++.. .+--.+.+..++..+....|..|+.+|
T Consensus 17 ~~FA~L~i~~FiILLIi~~~IW~~~r~~r~~MKE-ER~K~E~~~q~r~rES~~Er~K~~~s~ 77 (121)
T PF10669_consen 17 MFFAFLFIVVFIILLIITKSIWHDSRQVRIRMKE-ERSKKEEKRQKRNRESKRERQKFIWSM 77 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHhHHhhh
No 327
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.02 E-value=5.5e+02 Score=29.09 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=47.9
Q ss_pred EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHH
Q 001330 990 EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVD 1069 (1099)
Q Consensus 990 ~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~ 1069 (1099)
+.+++-+|+.+.+. ..+|+|++|= |+..+=-++++.++. ..++..++.-..+...+..+
T Consensus 198 VEv~slee~~ea~~------------~gaDiImLDn-~s~e~l~~av~~~~~--------~~~leaSGgI~~~ni~~yA~ 256 (281)
T PRK06543 198 VEVDRLDQIEPVLA------------AGVDTIMLDN-FSLDDLREGVELVDG--------RAIVEASGNVNLNTVGAIAS 256 (281)
T ss_pred EEeCCHHHHHHHHh------------cCCCEEEECC-CCHHHHHHHHHHhCC--------CeEEEEECCCCHHHHHHHHh
Confidence 56899999998874 3589999994 444444445554442 12678899999999999999
Q ss_pred cCCCEE
Q 001330 1070 AGMDFH 1075 (1099)
Q Consensus 1070 aG~ddy 1075 (1099)
.|+|-.
T Consensus 257 tGVD~I 262 (281)
T PRK06543 257 TGVDVI 262 (281)
T ss_pred cCCCEE
Confidence 999864
No 328
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=23.87 E-value=6.2e+02 Score=30.45 Aligned_cols=107 Identities=15% Similarity=0.188 Sum_probs=65.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEE--ECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEV--CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~--a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
+.++++|.|.+.. ..++.+.+.. .|.. .-..++..+.+. ..|+.++=- ..+.=|.-+++.+
T Consensus 290 ~~~l~ivG~G~~~-~~l~~~~~~~--~V~f~G~v~~~ev~~~~~-------------~aDv~V~pS-~~E~~g~~vlEAm 352 (465)
T PLN02871 290 GARLAFVGDGPYR-EELEKMFAGT--PTVFTGMLQGDELSQAYA-------------SGDVFVMPS-ESETLGFVVLEAM 352 (465)
T ss_pred CcEEEEEeCChHH-HHHHHHhccC--CeEEeccCCHHHHHHHHH-------------HCCEEEECC-cccccCcHHHHHH
Confidence 3578888887643 4455555433 3433 334466666653 368777532 2233355566666
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHc---CCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDA---GMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~a---G~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
. ..+|||+-..... .+.++. |-++++..|-+.++|.+.|..+++..
T Consensus 353 A-------~G~PVI~s~~gg~----~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~ 401 (465)
T PLN02871 353 A-------SGVPVVAARAGGI----PDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADP 401 (465)
T ss_pred H-------cCCCEEEcCCCCc----HhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCH
Confidence 4 2479986443322 233444 88999999999999999999887543
No 329
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=23.83 E-value=2.5e+02 Score=31.98 Aligned_cols=62 Identities=26% Similarity=0.353 Sum_probs=46.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhc--CC---eEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHH
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKL--GA---KFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEAT 1036 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~--G~---~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~ 1036 (1099)
.|+++|-|..+.++-++.+..+ || +|. ...||.+-++.+ ...+||+|+.|..-|.+.+..+-
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~-----------~~~~~dVii~dssdpvgpa~~lf 214 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL-----------KENPFDVIITDSSDPVGPACALF 214 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh-----------ccCCceEEEEecCCccchHHHHH
Confidence 5899999999888888887653 34 332 345787776665 34689999999999999986643
No 330
>PRK04457 spermidine synthase; Provisional
Probab=23.66 E-value=7.7e+02 Score=27.44 Aligned_cols=68 Identities=18% Similarity=0.084 Sum_probs=45.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcC--CeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC-C----CCHHH
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLG--AKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP-V----MNGWE 1034 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G--~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP-~----mdG~e 1034 (1099)
.+|..||=|+...+..++.+...+ ..+. ...|+.+.++.. ...||+|++|..-+ . +.-.+
T Consensus 91 ~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------------~~~yD~I~~D~~~~~~~~~~l~t~e 158 (262)
T PRK04457 91 TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH------------RHSTDVILVDGFDGEGIIDALCTQP 158 (262)
T ss_pred CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC------------CCCCCEEEEeCCCCCCCccccCcHH
Confidence 479999999999999998876432 3343 457777665432 24799999996322 1 12246
Q ss_pred HHHHHhcc
Q 001330 1035 ATRLIRKE 1042 (1099)
Q Consensus 1035 ~~r~IR~~ 1042 (1099)
+.+.+++.
T Consensus 159 fl~~~~~~ 166 (262)
T PRK04457 159 FFDDCRNA 166 (262)
T ss_pred HHHHHHHh
Confidence 77777654
No 331
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=23.48 E-value=5.5e+02 Score=28.95 Aligned_cols=91 Identities=21% Similarity=0.344 Sum_probs=58.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCe--E--EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC--HHHHH
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAK--F--EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN--GWEAT 1036 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~--v--~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md--G~e~~ 1036 (1099)
..++++||....+.++ ..+|.. + ....|.++....+...+. ...-=.++.|.-||..+ |++++
T Consensus 31 ~D~iaaEDTR~t~~LL----~~~~I~~~~is~h~hne~~~~~~li~~l~-------~g~~valVSDAG~P~ISDPG~~LV 99 (275)
T COG0313 31 VDVIAAEDTRVTRKLL----SHLGIKTPLISYHEHNEKEKLPKLIPLLK-------KGKSVALVSDAGTPLISDPGYELV 99 (275)
T ss_pred CCEEEEeccHHHHHHH----HHhCCCCceecccCCcHHHHHHHHHHHHh-------cCCeEEEEecCCCCcccCccHHHH
Confidence 3589999998777655 444542 2 233677777766654322 12224678999999764 99999
Q ss_pred HHHhccccccCCCccEEEEeccCCHHHHHHHHHcCC
Q 001330 1037 RLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGM 1072 (1099)
Q Consensus 1037 r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ 1072 (1099)
++.|+. .++|+.+-+-... ......+|.
T Consensus 100 ~~a~~~------gi~V~~lPG~sA~--~tAL~~SGl 127 (275)
T COG0313 100 RAAREA------GIRVVPLPGPSAL--ITALSASGL 127 (275)
T ss_pred HHHHHc------CCcEEecCCccHH--HHHHHHcCC
Confidence 999964 3788888765432 233345564
No 332
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=23.20 E-value=3.3e+02 Score=29.13 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=37.0
Q ss_pred CHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEE--eCCCCHHHHHHHHHH
Q 001330 1031 NGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL--TKPLQKDKLLDVVKS 1091 (1099)
Q Consensus 1031 dG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL--~KPi~~~~L~~~l~~ 1091 (1099)
..++.++.+|+. ..+||++...-.+......+.++|+|..+ ..-+..+.+.+.++.
T Consensus 59 g~~~~~~~i~~~-----v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~ 116 (217)
T cd00331 59 GSLEDLRAVREA-----VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYEL 116 (217)
T ss_pred CCHHHHHHHHHh-----cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHH
Confidence 445677788763 25899876555566678889999999986 333444555555443
No 333
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.12 E-value=3.5e+02 Score=33.32 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=26.6
Q ss_pred CCCccEEEEeccCCHHHHHHHHHcCCCEEE
Q 001330 1047 DVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076 (1099)
Q Consensus 1047 ~~~ipIIalTa~~~~~~~~~~l~aG~ddyL 1076 (1099)
+.++|||+-.+-....++.+|+.+|||..+
T Consensus 350 g~~~~viadgGir~~gdi~KAla~GA~~vm 379 (502)
T PRK07107 350 GVYIPICSDGGIVYDYHMTLALAMGADFIM 379 (502)
T ss_pred CCcceEEEcCCCCchhHHHHHHHcCCCeee
Confidence 345899999999999999999999999864
No 334
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=23.02 E-value=3.6e+02 Score=28.41 Aligned_cols=27 Identities=15% Similarity=-0.007 Sum_probs=22.1
Q ss_pred ccccCccccccccCCCcchHHHHHhhc
Q 001330 865 YRLLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 865 ~~~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.....|.+.++.||.....|...++.+
T Consensus 97 ~a~~~Ga~~yl~K~~~~~~l~~ai~~v 123 (216)
T PRK10840 97 AVLDLDIEGIVLKQGAPTDLPKALAAL 123 (216)
T ss_pred HHHHCCCeEEEECCCCHHHHHHHHHHH
Confidence 445678899999999999998888765
No 335
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=22.89 E-value=7.3e+02 Score=29.51 Aligned_cols=105 Identities=8% Similarity=0.034 Sum_probs=59.3
Q ss_pred CCEEEEEeCCHH---HHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC-CCCHHHHHH
Q 001330 962 GKKFLVVEDDAI---VLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP-VMNGWEATR 1037 (1099)
Q Consensus 962 ~~~ILvVdDd~~---~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP-~mdG~e~~r 1037 (1099)
+++|.+|.-|.. -...++...+..|..+..+.+..+..+.+.+ ...+|+||+|---- ..|-.. +.
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~----------~~~~DlVLIDTaGr~~~~~~~-l~ 274 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ----------SKDFDLVLVDTIGKSPKDFMK-LA 274 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH----------hCCCCEEEEcCCCCCccCHHH-HH
Confidence 568998888763 2233455555578888777776655444432 23699999997411 123332 33
Q ss_pred HHhccccccCCC-ccEEEEeccCCHHHHHHHHH----cCCCEEEe
Q 001330 1038 LIRKEEEQYDVH-IPIIALTAHAMAGVASKIVD----AGMDFHLT 1077 (1099)
Q Consensus 1038 ~IR~~~~~~~~~-ipIIalTa~~~~~~~~~~l~----aG~ddyL~ 1077 (1099)
++++.-....+. -.+++++|.....+..+.++ .|.+.+|.
T Consensus 275 el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~ 319 (388)
T PRK12723 275 EMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIF 319 (388)
T ss_pred HHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 333322111112 35678888877766665543 45677643
No 336
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=22.85 E-value=2.5e+02 Score=29.66 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=27.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCeEEEECCHH
Q 001330 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGK 996 (1099)
Q Consensus 965 ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~ 996 (1099)
|+|||=.--+...+.+.|++.|+++.+..+..
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~ 32 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPE 32 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChH
Confidence 57888888888999999999999999988754
No 337
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=22.78 E-value=4.9e+02 Score=28.48 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC----------CHHHHHHHHhccccccCCCccEEEEeccCCHH
Q 001330 993 RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM----------NGWEATRLIRKEEEQYDVHIPIIALTAHAMAG 1062 (1099)
Q Consensus 993 ~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m----------dG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~ 1062 (1099)
.-..+|++.+. +.++|.++++.-||-- +--|+++.++.... .-+. |+++=.++...+
T Consensus 166 ~~e~kaIdiL~-----------~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~-~f~~-pv~iGCmrP~Ge 232 (275)
T COG1856 166 HGEFKAIDILV-----------NYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARK-KFPN-PVSIGCMRPRGE 232 (275)
T ss_pred cchHHHHHHHh-----------cCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHH-hCCC-CeeEeecCcCch
Confidence 45678888884 3579999999999842 34455555553322 2334 777766665444
Q ss_pred H----HHHHHHcCCCEEEeCCCC
Q 001330 1063 V----ASKIVDAGMDFHLTKPLQ 1081 (1099)
Q Consensus 1063 ~----~~~~l~aG~ddyL~KPi~ 1081 (1099)
. ...+..+|+|. |++|..
T Consensus 233 ~rvk~d~~av~~gVd~-It~P~~ 254 (275)
T COG1856 233 WRVKLDKEAVLAGVDR-ITFPPR 254 (275)
T ss_pred hHHHHHHHHHHcCCce-eecCCc
Confidence 3 44567788874 778854
No 338
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=22.72 E-value=5.6e+02 Score=26.56 Aligned_cols=33 Identities=9% Similarity=0.081 Sum_probs=24.4
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchh
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEK 743 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~ 743 (1099)
+++++.++...+..+...+.. .|..+..+.+..
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~~~~ 37 (228)
T PRK11083 5 TILLVEDEQAIADTLVYALQS-EGFTVEWFERGL 37 (228)
T ss_pred EEEEEeCCHHHHHHHHHHHHH-CCCEEEEEcCHH
Confidence 577888888888888888876 677776555444
No 339
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=22.68 E-value=8e+02 Score=26.98 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=41.2
Q ss_pred HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHc-CCCEEEe------CCCCHHHHHHHHH
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDA-GMDFHLT------KPLQKDKLLDVVK 1090 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~a-G~ddyL~------KPi~~~~L~~~l~ 1090 (1099)
+++++++++. ..+|+|+-.+-.+.++..++++. |+++.+. .-++.+++.+.++
T Consensus 186 ~~~i~~~~~~-----~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 186 LELTRAVSDA-----VNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLA 245 (253)
T ss_pred HHHHHHHHhh-----CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHH
Confidence 6778888753 25899999999999999999975 9998765 4577777766654
No 340
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=22.51 E-value=52 Score=36.31 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=16.8
Q ss_pred HcCCCEEEeCCCCHHHHHHHHHH
Q 001330 1069 DAGMDFHLTKPLQKDKLLDVVKS 1091 (1099)
Q Consensus 1069 ~aG~ddyL~KPi~~~~L~~~l~~ 1091 (1099)
+.||...++-|+++........-
T Consensus 296 rfG~~yi~tq~idpt~~~~~~~y 318 (341)
T KOG1478|consen 296 RFGMPYIKTQEIDPTGMSDVFAY 318 (341)
T ss_pred cCCchhhccccCCchHHHHHHHH
Confidence 45888888888887777665543
No 341
>PLN02335 anthranilate synthase
Probab=22.42 E-value=1.6e+02 Score=31.95 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=45.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEE-ecCC-CCCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMM-DCEM-PVMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlm-Di~M-P~mdG~e~~r~I 1039 (1099)
..+|||||-..-.-..+...|++.|+.+.++.+....++.+. ...||.|++ -=-| |...| ...+.+
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~-----------~~~~d~iVisgGPg~p~d~~-~~~~~~ 85 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELK-----------RKNPRGVLISPGPGTPQDSG-ISLQTV 85 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHH-----------hcCCCEEEEcCCCCChhhcc-chHHHH
Confidence 358999986555666788889999998888765321123221 124665554 2222 22122 234455
Q ss_pred hccccccCCCccEEEEe
Q 001330 1040 RKEEEQYDVHIPIIALT 1056 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalT 1056 (1099)
++. ...+||+.+.
T Consensus 86 ~~~----~~~~PiLGIC 98 (222)
T PLN02335 86 LEL----GPLVPLFGVC 98 (222)
T ss_pred HHh----CCCCCEEEec
Confidence 532 2358998876
No 342
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.42 E-value=2.7e+02 Score=29.52 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=29.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHH
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKE 997 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~e 997 (1099)
+|+|||-..-|...+...|++.|+++..+.+.++
T Consensus 2 ~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~ 35 (196)
T PRK13170 2 NVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV 35 (196)
T ss_pred eEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH
Confidence 6899998888888888899999999999988754
No 343
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=22.38 E-value=1.1e+02 Score=42.08 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=32.4
Q ss_pred EEEEEeCCCCCCcccHh--------hhccccccccc---cCCC-CCCCccccHHHHHHHHHhcCCEE
Q 001330 591 EFEVDDTGKGIPKDKQN--------SIFEEFVQVKE---TALG-HQEGLGLGLGIVQSMVHLMKGEI 645 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~--------~IFe~F~q~d~---s~~~-~~~GtGLGLaIvk~lVe~~gG~I 645 (1099)
.|+|.|+|.|||-+..+ -||-......+ ...+ .+|-.|.|.+.|.-+-+.+-.++
T Consensus 95 ~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f~Vev 161 (1388)
T PTZ00108 95 EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKFTVEC 161 (1388)
T ss_pred eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceEEEEE
Confidence 38999999999976432 24443322211 1111 12336999998877776664444
No 344
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=22.30 E-value=2.7e+02 Score=31.28 Aligned_cols=69 Identities=16% Similarity=0.054 Sum_probs=45.3
Q ss_pred EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHH
Q 001330 989 FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV 1068 (1099)
Q Consensus 989 v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l 1068 (1099)
...+.+-+|+.+.+. ..+|+|.+|-.-| +-++++.+.-+.. +++||. .++.-..+...+..
T Consensus 185 ~vev~t~eea~~A~~------------~gaD~I~ld~~~~-----e~l~~~v~~i~~~-~~i~i~-asGGIt~~ni~~~a 245 (269)
T cd01568 185 EVEVETLEEAEEALE------------AGADIIMLDNMSP-----EELKEAVKLLKGL-PRVLLE-ASGGITLENIRAYA 245 (269)
T ss_pred EEecCCHHHHHHHHH------------cCCCEEEECCCCH-----HHHHHHHHHhccC-CCeEEE-EECCCCHHHHHHHH
Confidence 356789999888873 2589999997555 3333332211111 356655 55667788899999
Q ss_pred HcCCCEEE
Q 001330 1069 DAGMDFHL 1076 (1099)
Q Consensus 1069 ~aG~ddyL 1076 (1099)
++|+|.+-
T Consensus 246 ~~Gad~Is 253 (269)
T cd01568 246 ETGVDVIS 253 (269)
T ss_pred HcCCCEEE
Confidence 99999863
No 345
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=22.14 E-value=6.9e+02 Score=26.42 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=56.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhh----cCC-----------eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC-
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGK----LGA-----------KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE- 1026 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~----~G~-----------~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~- 1026 (1099)
++..||..-+..++++.+++.. .|. .|..+.+-++|++.+.+. ....|-+|-.|..
T Consensus 43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~--------~G~~P~~v~TsAr~ 114 (185)
T PF09936_consen 43 KGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEE--------EGKRPLLVATSARK 114 (185)
T ss_dssp SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHH--------HSS--EEEE--SS-
T ss_pred cCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHH--------hCCCCEEEEecCcC
Confidence 4789998888888888888852 221 478899999999988653 2357899999998
Q ss_pred CCCCCHHHHHHHHhccccccCCCccEEEE--eccCCHHHHHHHHHcCCCEEEeCCCC
Q 001330 1027 MPVMNGWEATRLIRKEEEQYDVHIPIIAL--TAHAMAGVASKIVDAGMDFHLTKPLQ 1081 (1099)
Q Consensus 1027 MP~mdG~e~~r~IR~~~~~~~~~ipIIal--Ta~~~~~~~~~~l~aG~ddyL~KPi~ 1081 (1099)
-|..=+++.++++-... +-|++++ |+....++..+ ..||+..|+.
T Consensus 115 ~~~~is~~~lr~~l~~~-----~~P~LllFGTGwGL~~ev~~-----~~D~iLePI~ 161 (185)
T PF09936_consen 115 YPNTISYAELRRMLEEE-----DRPVLLLFGTGWGLAPEVME-----QCDYILEPIR 161 (185)
T ss_dssp -SS-B-HHHHHHHHHH-------S-EEEEE--TT---HHHHT-----T-SEEB--TT
T ss_pred CCCCcCHHHHHHHHhcc-----CCeEEEEecCCCCCCHHHHH-----hcCeeEcccc
Confidence 56666777666654221 1355544 77766665433 3468888975
No 346
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=22.12 E-value=4.9e+02 Score=26.47 Aligned_cols=121 Identities=14% Similarity=0.117 Sum_probs=53.3
Q ss_pred CCEEEEEeCCHHH---HHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH--HHHH
Q 001330 962 GKKFLVVEDDAIV---LKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG--WEAT 1036 (1099)
Q Consensus 962 ~~~ILvVdDd~~~---~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG--~e~~ 1036 (1099)
+.+|++++-|..- .+.+....++.|..+.......+..+.+.+.+... ....+|+||+|. |+... -+.+
T Consensus 28 g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~viiDt--~g~~~~~~~~l 101 (173)
T cd03115 28 GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA----REENFDVVIVDT--AGRLQIDENLM 101 (173)
T ss_pred CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH----HhCCCCEEEEEC--cccchhhHHHH
Confidence 4689999877532 22333444556666555432222222221111111 123689999887 44321 1233
Q ss_pred HHHhccccccCCCccEEEEeccCCHHHHHH---HH-HcCCCEE-EeCCCCHHHHHHH
Q 001330 1037 RLIRKEEEQYDVHIPIIALTAHAMAGVASK---IV-DAGMDFH-LTKPLQKDKLLDV 1088 (1099)
Q Consensus 1037 r~IR~~~~~~~~~ipIIalTa~~~~~~~~~---~l-~aG~ddy-L~KPi~~~~L~~~ 1088 (1099)
+.++.......+.-.++++.+....+.... .. ..|.++. ++|.=........
T Consensus 102 ~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~~~viltk~D~~~~~g~~ 158 (173)
T cd03115 102 EELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARGGAA 158 (173)
T ss_pred HHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCcCCCCcchh
Confidence 444332211112334555555443332222 21 3466654 5564433333333
No 347
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=22.07 E-value=1.2e+02 Score=27.86 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=21.3
Q ss_pred ceEEeccchHHHHHHhhhhhcc-ccEEEEEcCCCcEEEe
Q 001330 214 GFISLGFPAKVVIDLFAALDFH-GGDLHLAAADGQVIIQ 251 (1099)
Q Consensus 214 ~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~v~~ 251 (1099)
|.++-.=+-..+.+.|+.+.+. +||+|+.|.+|.+++.
T Consensus 33 g~ls~eea~~~a~~~l~~~r~~~~gY~fi~d~~g~~l~h 71 (95)
T PF08269_consen 33 GKLSEEEAQQQAREALRALRYGGDGYFFIYDMDGVVLAH 71 (95)
T ss_dssp T-----TTHHHHHHHHHH--SBTTB--EEE-TTSBEEEE
T ss_pred CCccHHHHHHHHHHHHhccccCCCCeEEEEeCCCeEEEc
Confidence 5555444556667778877764 5899999999999994
No 348
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=22.04 E-value=5.4e+02 Score=30.48 Aligned_cols=110 Identities=13% Similarity=0.052 Sum_probs=62.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeE---------------EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCC
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKF---------------EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM 1027 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v---------------~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~M 1027 (1099)
.+++||-|.+.....+.+.+++.|... ..+..-.+.-+.+. ..|++++--..
T Consensus 263 ~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~-------------~aDi~~v~~S~ 329 (425)
T PRK05749 263 LLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYA-------------IADIAFVGGSL 329 (425)
T ss_pred cEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHH-------------hCCEEEECCCc
Confidence 478888888765466777788777643 22222233333332 35887763333
Q ss_pred CCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1028 PVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV-DAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1028 P~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l-~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
...-|..+++.+. ...|||+--......+..+.+ +.| ++..|-+.++|.+.+..+++.
T Consensus 330 ~e~~g~~~lEAma-------~G~PVI~g~~~~~~~e~~~~~~~~g---~~~~~~d~~~La~~l~~ll~~ 388 (425)
T PRK05749 330 VKRGGHNPLEPAA-------FGVPVISGPHTFNFKEIFERLLQAG---AAIQVEDAEDLAKAVTYLLTD 388 (425)
T ss_pred CCCCCCCHHHHHH-------hCCCEEECCCccCHHHHHHHHHHCC---CeEEECCHHHHHHHHHHHhcC
Confidence 2223444555554 247888532212233333332 344 566688999999999887653
No 349
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=22.01 E-value=6.8e+02 Score=27.56 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=58.2
Q ss_pred HHHHHHhhcCCeEEEE--CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHH-----HHHHHHhccccccCCC
Q 001330 977 VTSAVLGKLGAKFEVC--RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGW-----EATRLIRKEEEQYDVH 1049 (1099)
Q Consensus 977 ~l~~~L~~~G~~v~~a--~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~-----e~~r~IR~~~~~~~~~ 1049 (1099)
...++|-+.||.|... .|.--| +.+.+. =-..+|=+--|..+|. ..++.|++. .+
T Consensus 121 ~Aae~Lv~eGF~VlPY~~dD~v~a-rrLee~------------GcaavMPl~aPIGSg~G~~n~~~l~iiie~-----a~ 182 (262)
T COG2022 121 KAAEQLVKEGFVVLPYTTDDPVLA-RRLEEA------------GCAAVMPLGAPIGSGLGLQNPYNLEIIIEE-----AD 182 (262)
T ss_pred HHHHHHHhCCCEEeeccCCCHHHH-HHHHhc------------CceEeccccccccCCcCcCCHHHHHHHHHh-----CC
Confidence 3456677789998643 344333 233210 1256788888877764 466777753 36
Q ss_pred ccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1050 IPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1050 ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
+|||+=.+-..+.+...+++.|+|+.|.
T Consensus 183 VPviVDAGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 183 VPVIVDAGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred CCEEEeCCCCChhHHHHHHhcccceeeh
Confidence 9999999999999999999999999874
No 350
>PRK10742 putative methyltransferase; Provisional
Probab=21.92 E-value=5e+02 Score=28.87 Aligned_cols=97 Identities=11% Similarity=0.129 Sum_probs=59.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhc------CC----eEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKL------GA----KFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM 1030 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~------G~----~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1030 (1099)
|.+|..||-++....+++.-|+.. +. .+. ...|..+.+... ...||+|++|-+-|.-
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~------------~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------------TPRPQVVYLDPMFPHK 177 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC------------CCCCcEEEECCCCCCC
Confidence 456999999999999999999874 21 222 234544444322 2369999999999975
Q ss_pred CHH-HHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeC
Q 001330 1031 NGW-EATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078 (1099)
Q Consensus 1031 dG~-e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~K 1078 (1099)
.-- ...+.+|.... ++-......+..+.|++..-.-.+.|
T Consensus 178 ~ksa~vkk~mr~~~~--------l~g~d~d~~~lL~~Al~~A~kRVVVK 218 (250)
T PRK10742 178 QKSALVKKEMRVFQS--------LVGPDLDADGLLEPARLLATKRVVVK 218 (250)
T ss_pred ccccchhhhHHHHHH--------hcCCCCChHHHHHHHHHhcCceEEEe
Confidence 422 23344443211 12223345566677777666666655
No 351
>PRK01362 putative translaldolase; Provisional
Probab=21.85 E-value=4e+02 Score=28.90 Aligned_cols=87 Identities=22% Similarity=0.200 Sum_probs=56.4
Q ss_pred HHHHhhcCCe--EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEE--EE-ecCCCCCCHHHHHHHHhccccccCCCccEE
Q 001330 979 SAVLGKLGAK--FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI--MM-DCEMPVMNGWEATRLIRKEEEQYDVHIPII 1053 (1099)
Q Consensus 979 ~~~L~~~G~~--v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlI--lm-Di~MP~mdG~e~~r~IR~~~~~~~~~ipII 1053 (1099)
.+.|++.|.. ++.+.+..+|+..... ..++| ++ -+.-.+.||+++++++++....++.++.|+
T Consensus 94 ~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~a------------Ga~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkil 161 (214)
T PRK01362 94 VKALSKEGIKTNVTLIFSANQALLAAKA------------GATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEII 161 (214)
T ss_pred HHHHHHCCCceEEeeecCHHHHHHHHhc------------CCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 4456777865 5678999999877742 22322 11 111236789999999988765555455454
Q ss_pred EEeccCCHHHHHHHHHcCCCEEEeCC
Q 001330 1054 ALTAHAMAGVASKIVDAGMDFHLTKP 1079 (1099)
Q Consensus 1054 alTa~~~~~~~~~~l~aG~ddyL~KP 1079 (1099)
+ .+--...+..++..+|+|. ++=|
T Consensus 162 a-AS~r~~~~v~~~~~~G~d~-iTi~ 185 (214)
T PRK01362 162 A-ASVRHPMHVLEAALAGADI-ATIP 185 (214)
T ss_pred E-eecCCHHHHHHHHHcCCCE-EecC
Confidence 4 4455678888999999994 4444
No 352
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.70 E-value=9.6e+02 Score=25.27 Aligned_cols=169 Identities=12% Similarity=0.160 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHHHHHHHHHHHhHHhcC
Q 001330 410 AAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEEVVDMYYHVGIKKG 489 (1099)
Q Consensus 410 t~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~ 489 (1099)
-+|...+|+|.+...+. ..+.++.|++++.....- |.|-|+--|..-- .+.++..++-+-+-..+ ....
T Consensus 2 GAI~NGLELL~~~~~~~--~~~~~~LI~~Sa~~A~aR----l~F~RlAFGaag~-~~~i~~~e~~~~~~~~~----~~~r 70 (182)
T PF10090_consen 2 GAINNGLELLDDEGDPE--MRPAMELIRESARNASAR----LRFFRLAFGAAGS-GQQIDLGEARSVLRGYF----AGGR 70 (182)
T ss_pred cchhhhHHHHcCCCCcc--chHHHHHHHHHHHHHHHH----HHHHHHHcCCCCC-CCCCCHHHHHHHHHHHH----hCCc
Confidence 36788899887654422 234889999998876554 4566665554433 46677777654443333 2335
Q ss_pred CEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC-eEEEEEEEeccccchhhhhccccchhhccchhhhcc
Q 001330 490 VDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG-HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRN 568 (1099)
Q Consensus 490 i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (1099)
+++....+.... ++. ..|++.||+-=|...-+.| .|.|.+.....
T Consensus 71 ~~l~W~~~~~~~--------~k~-~vklllnl~l~a~~alprGG~i~V~~~~~~~------------------------- 116 (182)
T PF10090_consen 71 ITLDWQVERDLL--------PKP-EVKLLLNLLLCAEDALPRGGEITVSIEGSEG------------------------- 116 (182)
T ss_pred eEEEccCccccC--------CHH-HHHHHHHHHHHHHhhcCCCCEEEEEEeccCC-------------------------
Confidence 667666543211 233 3488999998888887776 46665321111
Q ss_pred CCCCCccccccccccCCCceeEEEEEEeCCCC--CCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEE
Q 001330 569 KEGFDDLDALHSVERNPNLLQFEFEVDDTGKG--IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIA 646 (1099)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G--I~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~ 646 (1099)
...|.|.=+|.. ++++-+.-+=..-.. ..-.....=-+....+++..|++|.
T Consensus 117 --------------------~~~~~v~a~G~~~~~~~~~~~~L~g~~~~------~~l~~~~VQ~~~~~~la~~~G~~l~ 170 (182)
T PF10090_consen 117 --------------------DGGWRVRAEGPRARLDPDLWAALAGEDPE------EDLDPRNVQFYLLPLLAREAGRRLS 170 (182)
T ss_pred --------------------CceEEEEEeccccCCCHHHHHHhcCCCCC------CCCCHHhHHHHHHHHHHHHcCCeEE
Confidence 123566666664 555444433211100 1112334456788899999999999
Q ss_pred EEe
Q 001330 647 IAD 649 (1099)
Q Consensus 647 v~s 649 (1099)
++.
T Consensus 171 ~~~ 173 (182)
T PF10090_consen 171 VEA 173 (182)
T ss_pred EEe
Confidence 954
No 353
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=21.65 E-value=2.9e+02 Score=28.80 Aligned_cols=69 Identities=20% Similarity=0.121 Sum_probs=46.8
Q ss_pred EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHH
Q 001330 990 EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVD 1069 (1099)
Q Consensus 990 ~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~ 1069 (1099)
..+++.+|+.+.+. ..+|.|.+|=.-| -+=-++++.+|.. .++ ..|..++.-..+...+..+
T Consensus 85 VEv~~~ee~~ea~~------------~g~d~I~lD~~~~-~~~~~~v~~l~~~----~~~-v~ie~SGGI~~~ni~~ya~ 146 (169)
T PF01729_consen 85 VEVENLEEAEEALE------------AGADIIMLDNMSP-EDLKEAVEELREL----NPR-VKIEASGGITLENIAEYAK 146 (169)
T ss_dssp EEESSHHHHHHHHH------------TT-SEEEEES-CH-HHHHHHHHHHHHH----TTT-SEEEEESSSSTTTHHHHHH
T ss_pred EEcCCHHHHHHHHH------------hCCCEEEecCcCH-HHHHHHHHHHhhc----CCc-EEEEEECCCCHHHHHHHHh
Confidence 45788889888874 2589999996544 2233444444433 233 6788899899999999999
Q ss_pred cCCCEEE
Q 001330 1070 AGMDFHL 1076 (1099)
Q Consensus 1070 aG~ddyL 1076 (1099)
.|+|.+-
T Consensus 147 ~gvD~is 153 (169)
T PF01729_consen 147 TGVDVIS 153 (169)
T ss_dssp TT-SEEE
T ss_pred cCCCEEE
Confidence 9998764
No 354
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=21.41 E-value=90 Score=35.82 Aligned_cols=48 Identities=19% Similarity=0.147 Sum_probs=36.5
Q ss_pred CCccEEEEeccCCHHHHHHHHHcCCCEE------EeC-CCCHHHHHHHHHHHHHH
Q 001330 1048 VHIPIIALTAHAMAGVASKIVDAGMDFH------LTK-PLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1048 ~~ipIIalTa~~~~~~~~~~l~aG~ddy------L~K-Pi~~~~L~~~l~~i~~~ 1095 (1099)
.++|||++.+-.+.++..+.+.+||+.. +.+ |--..++.+-|.++++.
T Consensus 240 ~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~ 294 (310)
T PRK02506 240 PSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKELKAIMAE 294 (310)
T ss_pred CCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999873 333 55566666666655543
No 355
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=21.29 E-value=6.2e+02 Score=30.55 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=31.1
Q ss_pred CCEEEEEeCCHH---HHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC
Q 001330 962 GKKFLVVEDDAI---VLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026 (1099)
Q Consensus 962 ~~~ILvVdDd~~---~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~ 1026 (1099)
+.+|++|+-|.. ..+.+...-+..|..+..+.++....+...+.++.. ....||+||+|.-
T Consensus 128 g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~----~~~~~DvVIIDTa 191 (428)
T TIGR00959 128 GKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYA----KENGFDVVIVDTA 191 (428)
T ss_pred CCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHH----HhcCCCEEEEeCC
Confidence 568999988842 233344444556666665543222212111111111 1236899999973
No 356
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=21.21 E-value=5.7e+02 Score=26.56 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=26.3
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhH
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNL 745 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~ 745 (1099)
+++++.++......+...+.. .|..+..+.+....
T Consensus 4 ~iLlv~d~~~~~~~l~~~l~~-~~~~v~~~~~~~~~ 38 (221)
T PRK10766 4 HILVVEDEPVTRARLQGYFEQ-EGYTVSEAASGAGM 38 (221)
T ss_pred EEEEEeCCHHHHHHHHHHHHH-cCCEEEEECCHHHH
Confidence 577888888888888888877 78877776665543
No 357
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.18 E-value=7.4e+02 Score=32.21 Aligned_cols=103 Identities=10% Similarity=0.044 Sum_probs=59.6
Q ss_pred CEEEEEeCCHH---HHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH--HHHHH
Q 001330 963 KKFLVVEDDAI---VLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG--WEATR 1037 (1099)
Q Consensus 963 ~~ILvVdDd~~---~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG--~e~~r 1037 (1099)
++|.++.-|.. ..+.++..-+..|..+..+.+..+..+.+.+ ...+|+||+|- |+++- -++.+
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~----------~~~~D~VLIDT--AGRs~~d~~l~e 283 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA----------LGDKHLVLIDT--VGMSQRDRNVSE 283 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH----------hcCCCEEEEeC--CCCCccCHHHHH
Confidence 47888776653 2345555556678778778888876665543 23679999995 55321 12444
Q ss_pred HHhccccccCCCccEEEEeccCCHHHHH---HHHHc----CCCEEEe
Q 001330 1038 LIRKEEEQYDVHIPIIALTAHAMAGVAS---KIVDA----GMDFHLT 1077 (1099)
Q Consensus 1038 ~IR~~~~~~~~~ipIIalTa~~~~~~~~---~~l~a----G~ddyL~ 1077 (1099)
+++.......+.-.++++.+....++.. +.+.. +.+++|.
T Consensus 284 el~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIl 330 (767)
T PRK14723 284 QIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCII 330 (767)
T ss_pred HHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEE
Confidence 4444222222334577777766555443 33432 5677643
No 358
>PRK10060 RNase II stability modulator; Provisional
Probab=20.96 E-value=5.4e+02 Score=32.77 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=71.3
Q ss_pred HHHHHHhhcCCeEEE--ECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCC----C-CCCHHHHHHHHhccccccCCC
Q 001330 977 VTSAVLGKLGAKFEV--CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM----P-VMNGWEATRLIRKEEEQYDVH 1049 (1099)
Q Consensus 977 ~l~~~L~~~G~~v~~--a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~M----P-~mdG~e~~r~IR~~~~~~~~~ 1049 (1099)
.....|++.|+.+.. +..|-..+..+. ..++|.|=+|-.. . ......+++.|-..... ..
T Consensus 545 ~~l~~L~~~G~~ialDdfGtg~ssl~~L~-----------~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~--lg 611 (663)
T PRK10060 545 SVIQQFSQLGAQVHLDDFGTGYSSLSQLA-----------RFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQA--LN 611 (663)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHH-----------hCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHH--CC
Confidence 344667889998766 567777777774 3489999999533 2 23455666666443322 23
Q ss_pred ccEEEEeccCCHHHHHHHHHcCCCE----EEeCCCCHHHHHHHHHHHH
Q 001330 1050 IPIIALTAHAMAGVASKIVDAGMDF----HLTKPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1050 ipIIalTa~~~~~~~~~~l~aG~dd----yL~KPi~~~~L~~~l~~i~ 1093 (1099)
+.+| ..+-.+.+....+.+.|+|. |+.||...+++...+++..
T Consensus 612 ~~vi-AeGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~~~ 658 (663)
T PRK10060 612 LQVI-AEGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRYL 658 (663)
T ss_pred CcEE-EecCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHhhh
Confidence 5555 45666778888888999985 6999999999988877653
No 359
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=20.91 E-value=3.6e+02 Score=30.82 Aligned_cols=66 Identities=17% Similarity=0.131 Sum_probs=46.1
Q ss_pred EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHH
Q 001330 989 FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV 1068 (1099)
Q Consensus 989 v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l 1068 (1099)
.+.+++.+||.+.+. ..+|+|++|-.-| -+=-++++.++ .+ ..|..++.-..+...+..
T Consensus 212 eVEv~sleea~ea~~------------~gaDiI~LDn~s~-e~~~~av~~~~-------~~-~~ieaSGGI~~~ni~~yA 270 (296)
T PRK09016 212 EVEVENLDELDQALK------------AGADIIMLDNFTT-EQMREAVKRTN-------GR-ALLEVSGNVTLETLREFA 270 (296)
T ss_pred EEEeCCHHHHHHHHH------------cCCCEEEeCCCCh-HHHHHHHHhhc-------CC-eEEEEECCCCHHHHHHHH
Confidence 456789999998884 2589999996444 22233333332 12 357778888999999999
Q ss_pred HcCCCEE
Q 001330 1069 DAGMDFH 1075 (1099)
Q Consensus 1069 ~aG~ddy 1075 (1099)
+.|+|..
T Consensus 271 ~tGVD~I 277 (296)
T PRK09016 271 ETGVDFI 277 (296)
T ss_pred hcCCCEE
Confidence 9999865
No 360
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=20.78 E-value=7e+02 Score=30.70 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=25.3
Q ss_pred CccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1049 HIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1049 ~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
.+|||+=.+-....++.+|+.+||+..+.
T Consensus 344 ~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 48999888888999999999999998653
No 361
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=20.76 E-value=5.3e+02 Score=28.12 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=21.3
Q ss_pred ccccCccccccccCCCcchHHHHHhhc
Q 001330 865 YRLLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 865 ~~~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.....+.+.++.||+....|...+..+
T Consensus 95 ~~~~~G~~~~l~KP~~~~~L~~~i~~~ 121 (262)
T TIGR02875 95 RAVALGADYYVLKPFDLEILAARIRQL 121 (262)
T ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 344577888999999999998887654
No 362
>PRK04302 triosephosphate isomerase; Provisional
Probab=20.64 E-value=1.1e+03 Score=25.45 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=31.7
Q ss_pred HHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeC
Q 001330 1034 EATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078 (1099)
Q Consensus 1034 e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~K 1078 (1099)
++++.+|+. ..++||++-.+-...++...+++.|+|+++.-
T Consensus 162 ~~~~~ir~~----~~~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 162 DAVEAVKKV----NPDVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred HHHHHHHhc----cCCCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 455667753 12589998888888999999999999998653
No 363
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=20.58 E-value=6.8e+02 Score=29.53 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=37.4
Q ss_pred CccEEEEecCC-------CCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1017 PYDYIMMDCEM-------PVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1017 ~~DlIlmDi~M-------P~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
..|+|.++... +..+..++.+.+++. .+|||+ ..-.+.++..+++++|+|..+.
T Consensus 154 Gvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~------~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 154 GVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL------DVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CCCEEEEeccchhhhccCCcCCHHHHHHHHHHC------CCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 68999997532 222555666666642 489887 4456778889999999999754
No 364
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=20.52 E-value=1.9e+02 Score=32.06 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=46.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcC-----CeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH----
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLG-----AKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG---- 1032 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G-----~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG---- 1032 (1099)
.+|-+||=|+...++.++.+.... -++ ....||..-++.. ....||+|++|+.-|...+
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-----------~~~~yDvIi~D~~dp~~~~~~l~ 169 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-----------QEEKYDVIIVDLTDPDGPAPNLF 169 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-----------SST-EEEEEEESSSTTSCGGGGS
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-----------cCCcccEEEEeCCCCCCCccccc
Confidence 479999999999999999886432 233 3567777765443 1127999999999886554
Q ss_pred -HHHHHHHhcc
Q 001330 1033 -WEATRLIRKE 1042 (1099)
Q Consensus 1033 -~e~~r~IR~~ 1042 (1099)
.|+.+.+++.
T Consensus 170 t~ef~~~~~~~ 180 (246)
T PF01564_consen 170 TREFYQLCKRR 180 (246)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHhh
Confidence 3566666543
No 365
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=20.41 E-value=5.4e+02 Score=32.61 Aligned_cols=93 Identities=17% Similarity=0.227 Sum_probs=56.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHH-HHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGK-EAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~-eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
+..+.++|.|+...+.++ +.|+.+...+-.+ +.++.. .-...|+++.-..-+.. -..++..+|
T Consensus 423 g~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~a-----------gi~~A~~vvv~~~d~~~-n~~i~~~ar 486 (621)
T PRK03562 423 GVKMTVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESA-----------GAAKAEVLINAIDDPQT-SLQLVELVK 486 (621)
T ss_pred CCCEEEEECCHHHHHHHH----hcCCeEEEEeCCCHHHHHhc-----------CCCcCCEEEEEeCCHHH-HHHHHHHHH
Confidence 346788888887665543 3577765543222 222222 23467888877643333 356667777
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEE
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL 1076 (1099)
+. .++++|++-+. +.+...+..++|+|..+
T Consensus 487 ~~----~p~~~iiaRa~--d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 487 EH----FPHLQIIARAR--DVDHYIRLRQAGVEKPE 516 (621)
T ss_pred Hh----CCCCeEEEEEC--CHHHHHHHHHCCCCEEe
Confidence 64 34678877663 45667788899999764
No 366
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=20.26 E-value=6.2e+02 Score=28.19 Aligned_cols=68 Identities=22% Similarity=0.318 Sum_probs=43.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcC-----CeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC-----
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLG-----AKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN----- 1031 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G-----~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md----- 1031 (1099)
.++.+||-++...+..++.+...+ -.+. ...|+.+.++.. ...||+|++|..-|...
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------------~~~yDvIi~D~~~~~~~~~~l~ 164 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------------ENTFDVIIVDSTDPVGPAETLF 164 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------------CCCccEEEEeCCCCCCcccchh
Confidence 479999999999998888875432 1232 335666554332 34799999998655432
Q ss_pred HHHHHHHHhcc
Q 001330 1032 GWEATRLIRKE 1042 (1099)
Q Consensus 1032 G~e~~r~IR~~ 1042 (1099)
.-++.+.+++.
T Consensus 165 ~~ef~~~~~~~ 175 (270)
T TIGR00417 165 TKEFYELLKKA 175 (270)
T ss_pred HHHHHHHHHHH
Confidence 23555666543
No 367
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=20.26 E-value=1.3e+03 Score=26.80 Aligned_cols=109 Identities=15% Similarity=0.180 Sum_probs=64.1
Q ss_pred CEEEEEeCCH--------HHHHHHHHHHhhcCCeEEEEC--CHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH
Q 001330 963 KKFLVVEDDA--------IVLKVTSAVLGKLGAKFEVCR--NGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG 1032 (1099)
Q Consensus 963 ~~ILvVdDd~--------~~~~~l~~~L~~~G~~v~~a~--~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG 1032 (1099)
.++++|.|.+ ...+.+..+..+.+-.+.... +.++..+.+. ..|+.++=-...+.=|
T Consensus 225 ~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~-------------~aDv~v~pS~~~E~f~ 291 (380)
T PRK15484 225 LKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYP-------------LADLVVVPSQVEEAFC 291 (380)
T ss_pred eEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHH-------------hCCEEEeCCCCccccc
Confidence 4677776532 223344555555565665543 3455555553 3688876332223334
Q ss_pred HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEE-EeCCCCHHHHHHHHHHHHHH
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH-LTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddy-L~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.-+++.+. ..+|||+-..... .+.+..|.++| +..|.+.++|.+.|.++++.
T Consensus 292 ~~~lEAma-------~G~PVI~s~~gg~----~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 292 MVAVEAMA-------AGKPVLASTKGGI----TEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred cHHHHHHH-------cCCCEEEeCCCCc----HhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 55555554 2479887433222 23455688888 66899999999999887653
No 368
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=20.16 E-value=2.8e+02 Score=30.08 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=43.4
Q ss_pred cEEEEecCCCCC-CH--HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1019 DYIMMDCEMPVM-NG--WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1019 DlIlmDi~MP~m-dG--~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
.+|++|+.--++ .| +++++++++. ..+|+|+=-+-.+.++..+..+.|+++.+.
T Consensus 156 ~ii~tdI~~dGt~~G~d~eli~~i~~~-----~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 156 GLIVLDIHSVGTMKGPNLELLTKTLEL-----SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred EEEEEECCccccCCCCCHHHHHHHHhh-----CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 689999986543 33 6888888864 358999988889999999999999998865
Done!