Query 001330
Match_columns 1099
No_of_seqs 665 out of 5197
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 22:36:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 1.2E-37 4E-42 342.2 31.6 233 385-667 11-249 (258)
2 4ew8_A Sensor protein DIVL; si 100.0 1.3E-32 4.5E-37 302.9 32.6 224 387-667 33-257 (268)
3 2e0a_A Pyruvate dehydrogenase 100.0 1.3E-32 4.4E-37 321.7 26.4 222 395-667 96-351 (394)
4 3jz3_A Sensor protein QSEC; he 100.0 5.8E-34 2E-38 304.0 12.7 216 394-667 2-218 (222)
5 2btz_A Pyruvate dehydrogenase 100.0 5E-33 1.7E-37 325.2 21.8 222 396-667 97-351 (394)
6 2q8g_A [pyruvate dehydrogenase 100.0 4.3E-32 1.5E-36 318.5 24.4 221 397-667 108-364 (407)
7 1gkz_A [3-methyl-2-oxobutanoat 100.0 8.1E-32 2.8E-36 314.3 25.7 223 390-667 117-374 (388)
8 1y8o_A [pyruvate dehydrogenase 100.0 9E-32 3.1E-36 316.9 23.7 220 398-667 121-375 (419)
9 3a0r_A Sensor protein; four he 100.0 3.7E-31 1.3E-35 302.1 22.2 213 393-666 131-345 (349)
10 3d36_A Sporulation kinase B; G 100.0 4.6E-31 1.6E-35 285.7 21.8 213 393-667 13-226 (244)
11 4fpp_A Phosphotransferase; fou 100.0 1.6E-29 5.4E-34 276.7 22.4 195 397-664 49-246 (247)
12 1b3q_A Protein (chemotaxis pro 99.9 1.8E-25 6E-30 259.7 18.3 202 392-667 8-249 (379)
13 3to5_A CHEY homolog; alpha(5)b 99.9 3.9E-24 1.3E-28 211.3 16.6 121 962-1095 12-133 (134)
14 1ysr_A Sensor-type histidine k 99.9 2.4E-23 8.2E-28 208.8 16.2 146 464-666 4-149 (150)
15 1id0_A PHOQ histidine kinase; 99.9 9E-23 3.1E-27 204.7 18.7 145 466-667 2-146 (152)
16 3ehh_A Sensor kinase (YOCF pro 99.9 2.3E-22 7.9E-27 214.2 22.2 189 393-666 27-216 (218)
17 3a0y_A Sensor protein; ATP-LID 99.9 5E-22 1.7E-26 198.9 19.1 145 464-666 2-148 (152)
18 1bxd_A ENVZ(290-450), protein 99.9 3.5E-22 1.2E-26 202.9 16.7 148 462-667 4-151 (161)
19 3sl2_A Sensor histidine kinase 99.9 3.6E-22 1.2E-26 206.2 16.5 151 467-667 2-153 (177)
20 1r62_A Nitrogen regulation pro 99.9 7E-22 2.4E-26 199.4 15.0 156 462-666 2-159 (160)
21 1i58_A Chemotaxis protein CHEA 99.8 5.4E-21 1.8E-25 199.5 12.4 149 466-665 3-188 (189)
22 3mm4_A Histidine kinase homolo 99.8 3.2E-20 1.1E-24 196.8 16.3 134 962-1097 61-198 (206)
23 3luf_A Two-component system re 99.8 6.8E-19 2.3E-23 193.6 23.0 123 963-1097 125-247 (259)
24 3gl9_A Response regulator; bet 99.8 3.4E-19 1.2E-23 172.0 17.4 119 963-1094 3-121 (122)
25 2lpm_A Two-component response 99.8 1.5E-21 5E-26 189.7 0.3 114 961-1094 7-121 (123)
26 3t6k_A Response regulator rece 99.8 2.3E-18 7.8E-23 169.4 18.0 122 962-1096 4-125 (136)
27 2ayx_A Sensor kinase protein R 99.8 1.6E-17 5.3E-22 182.2 25.8 122 961-1097 128-249 (254)
28 3f6p_A Transcriptional regulat 99.8 2.9E-18 9.9E-23 164.7 15.9 116 963-1094 3-118 (120)
29 2r25_B Osmosensing histidine p 99.8 2.8E-18 9.7E-23 168.1 15.6 125 963-1096 3-128 (133)
30 3m6m_D Sensory/regulatory prot 99.8 4.5E-18 1.5E-22 168.9 17.0 124 961-1095 13-136 (143)
31 3h1g_A Chemotaxis protein CHEY 99.8 6.9E-18 2.3E-22 164.1 17.5 121 962-1094 5-126 (129)
32 3n0r_A Response regulator; sig 99.8 5.3E-19 1.8E-23 197.3 9.1 118 962-1097 160-279 (286)
33 3ehg_A Sensor kinase (YOCF pro 99.8 6.4E-18 2.2E-22 165.1 15.5 125 468-666 2-126 (128)
34 3rqi_A Response regulator prot 99.8 2.7E-18 9.2E-23 178.3 13.3 122 960-1096 5-126 (184)
35 1dbw_A Transcriptional regulat 99.7 3.1E-17 1E-21 158.5 17.0 120 962-1096 3-122 (126)
36 3gt7_A Sensor protein; structu 99.7 4.3E-17 1.5E-21 163.8 18.2 123 962-1097 7-129 (154)
37 3crn_A Response regulator rece 99.7 6.2E-17 2.1E-21 158.0 17.7 119 963-1096 4-122 (132)
38 2pl1_A Transcriptional regulat 99.7 9.6E-17 3.3E-21 153.3 18.0 118 964-1096 2-119 (121)
39 1jbe_A Chemotaxis protein CHEY 99.7 1E-16 3.5E-21 154.9 18.4 121 963-1096 5-126 (128)
40 1srr_A SPO0F, sporulation resp 99.7 5.3E-17 1.8E-21 156.2 15.6 117 963-1094 4-120 (124)
41 3eod_A Protein HNR; response r 99.7 5.6E-17 1.9E-21 157.4 15.6 121 960-1095 5-126 (130)
42 1mb3_A Cell division response 99.7 7.7E-17 2.6E-21 154.7 16.1 119 963-1094 2-120 (124)
43 1tmy_A CHEY protein, TMY; chem 99.7 9.5E-17 3.3E-21 153.3 16.5 116 963-1093 3-119 (120)
44 3r0j_A Possible two component 99.7 9.4E-17 3.2E-21 175.0 18.6 120 961-1095 22-141 (250)
45 1zgz_A Torcad operon transcrip 99.7 1.6E-16 5.5E-21 152.2 17.8 119 963-1097 3-121 (122)
46 1xhf_A DYE resistance, aerobic 99.7 1.5E-16 5.1E-21 152.6 17.5 118 963-1096 4-121 (123)
47 3hv2_A Response regulator/HD d 99.7 1.5E-16 5.2E-21 159.3 18.2 122 961-1097 13-135 (153)
48 1i3c_A Response regulator RCP1 99.7 1.7E-16 5.7E-21 158.4 18.2 129 962-1096 8-138 (149)
49 3zxo_A Redox sensor histidine 99.7 5.2E-17 1.8E-21 158.1 13.9 127 465-666 2-128 (129)
50 2a9o_A Response regulator; ess 99.7 1.8E-16 6.2E-21 151.0 17.3 117 963-1095 2-118 (120)
51 3kht_A Response regulator; PSI 99.7 1.5E-16 5.2E-21 157.3 17.3 123 962-1097 5-130 (144)
52 3kto_A Response regulator rece 99.7 5.5E-17 1.9E-21 159.2 13.8 119 963-1096 7-127 (136)
53 3cfy_A Putative LUXO repressor 99.7 1.7E-16 5.8E-21 156.2 17.2 119 963-1096 5-123 (137)
54 1dcf_A ETR1 protein; beta-alph 99.7 1.8E-16 6.1E-21 155.2 16.9 123 960-1094 5-128 (136)
55 3jte_A Response regulator rece 99.7 3.2E-16 1.1E-20 154.6 18.8 122 963-1097 4-125 (143)
56 3heb_A Response regulator rece 99.7 2E-16 6.9E-21 158.1 17.3 130 963-1096 5-136 (152)
57 1k68_A Phytochrome response re 99.7 3.4E-16 1.2E-20 152.9 18.5 130 962-1097 2-133 (140)
58 3lua_A Response regulator rece 99.7 6.5E-17 2.2E-21 159.2 13.4 122 962-1096 4-128 (140)
59 2qzj_A Two-component response 99.7 1.8E-16 6.1E-21 155.8 16.3 119 963-1097 5-123 (136)
60 1p6q_A CHEY2; chemotaxis, sign 99.7 8.3E-17 2.8E-21 155.8 13.7 120 963-1095 7-127 (129)
61 3grc_A Sensor protein, kinase; 99.7 9.7E-17 3.3E-21 157.8 14.1 122 962-1096 6-128 (140)
62 3i42_A Response regulator rece 99.7 5.7E-17 2E-21 156.6 12.1 120 963-1096 4-123 (127)
63 3b2n_A Uncharacterized protein 99.7 2.7E-16 9.1E-21 153.7 16.8 118 963-1095 4-123 (133)
64 3ilh_A Two component response 99.7 2.5E-16 8.4E-21 155.5 16.7 128 962-1095 9-139 (146)
65 3hdg_A Uncharacterized protein 99.7 2.3E-16 7.9E-21 154.4 16.3 121 962-1097 7-127 (137)
66 3hdv_A Response regulator; PSI 99.7 3.9E-16 1.4E-20 152.6 17.8 121 962-1095 7-127 (136)
67 3h5i_A Response regulator/sens 99.7 9.5E-17 3.3E-21 158.3 13.0 122 961-1097 4-126 (140)
68 3dzd_A Transcriptional regulat 99.7 6.1E-17 2.1E-21 187.0 13.4 120 963-1097 1-120 (368)
69 4dad_A Putative pilus assembly 99.7 1E-16 3.5E-21 159.0 12.6 122 961-1096 19-142 (146)
70 3hzh_A Chemotaxis response reg 99.7 2E-16 7E-21 159.4 14.8 120 962-1094 36-156 (157)
71 3nhm_A Response regulator; pro 99.7 3.2E-16 1.1E-20 152.5 15.5 121 962-1097 4-124 (133)
72 4e7p_A Response regulator; DNA 99.7 4.2E-16 1.4E-20 155.6 16.6 119 962-1095 20-140 (150)
73 1zh2_A KDP operon transcriptio 99.7 5.1E-16 1.7E-20 148.0 16.4 118 963-1096 2-119 (121)
74 1mvo_A PHOP response regulator 99.7 4E-16 1.4E-20 152.4 16.0 118 963-1095 4-121 (136)
75 1k66_A Phytochrome response re 99.7 6.2E-16 2.1E-20 152.9 17.5 130 961-1096 5-139 (149)
76 3snk_A Response regulator CHEY 99.7 3.1E-17 1.1E-21 160.6 7.9 118 962-1094 14-132 (135)
77 1dz3_A Stage 0 sporulation pro 99.7 3.7E-16 1.3E-20 151.7 15.4 119 963-1095 3-123 (130)
78 2zay_A Response regulator rece 99.7 4.5E-16 1.5E-20 154.3 16.1 123 962-1097 8-130 (147)
79 3c3m_A Response regulator rece 99.7 5.4E-16 1.8E-20 152.5 15.8 120 963-1095 4-123 (138)
80 2jba_A Phosphate regulon trans 99.7 1E-16 3.4E-21 154.6 10.3 121 963-1096 3-123 (127)
81 3f6c_A Positive transcription 99.7 2E-16 6.9E-21 154.1 12.4 118 963-1095 2-120 (134)
82 3kcn_A Adenylate cyclase homol 99.7 1E-15 3.6E-20 152.8 17.8 121 962-1097 4-125 (151)
83 3eul_A Possible nitrate/nitrit 99.7 1.1E-15 3.7E-20 152.8 17.6 120 961-1095 14-135 (152)
84 1yio_A Response regulatory pro 99.7 3.1E-16 1E-20 165.5 14.3 119 962-1095 4-122 (208)
85 2rjn_A Response regulator rece 99.7 1.4E-15 4.7E-20 152.3 18.2 121 961-1096 6-127 (154)
86 3q9s_A DNA-binding response re 99.7 4E-16 1.4E-20 170.4 15.5 119 960-1094 35-153 (249)
87 3cnb_A DNA-binding response re 99.7 1.4E-15 4.8E-20 149.4 17.9 122 962-1096 8-131 (143)
88 3lte_A Response regulator; str 99.7 1.1E-15 3.7E-20 148.5 16.7 119 962-1094 6-124 (132)
89 3n53_A Response regulator rece 99.7 4.1E-16 1.4E-20 153.4 13.1 121 962-1096 3-123 (140)
90 3cu5_A Two component transcrip 99.7 4.1E-16 1.4E-20 154.2 13.2 120 963-1097 3-125 (141)
91 2qxy_A Response regulator; reg 99.7 9.8E-16 3.3E-20 150.9 15.7 118 963-1096 5-122 (142)
92 3cg0_A Response regulator rece 99.7 1.9E-15 6.5E-20 148.1 17.6 120 962-1097 9-130 (140)
93 3zxq_A Hypoxia sensor histidin 99.7 9E-16 3.1E-20 148.4 14.7 122 469-666 2-123 (124)
94 1a04_A Nitrate/nitrite respons 99.7 1.5E-15 5.1E-20 161.1 17.5 118 963-1095 6-125 (215)
95 3a10_A Response regulator; pho 99.6 5.5E-16 1.9E-20 147.0 12.2 114 963-1093 2-115 (116)
96 1qkk_A DCTD, C4-dicarboxylate 99.6 1.8E-15 6.1E-20 151.7 16.5 120 962-1096 3-122 (155)
97 3cg4_A Response regulator rece 99.6 4.6E-16 1.6E-20 153.2 11.9 123 962-1097 7-129 (142)
98 1s8n_A Putative antiterminator 99.6 1.3E-15 4.5E-20 160.5 15.5 118 963-1096 14-132 (205)
99 2qr3_A Two-component system re 99.6 2.2E-15 7.6E-20 147.7 15.8 119 962-1095 3-126 (140)
100 2jk1_A HUPR, hydrogenase trans 99.6 2.6E-15 8.8E-20 147.6 16.3 117 963-1095 2-119 (139)
101 1w25_A Stalked-cell differenti 99.6 1.8E-15 6.1E-20 179.8 18.0 120 963-1095 2-121 (459)
102 1kgs_A DRRD, DNA binding respo 99.6 2E-15 6.9E-20 161.1 15.6 119 963-1096 3-121 (225)
103 3eq2_A Probable two-component 99.6 8E-16 2.7E-20 179.3 13.5 118 963-1095 6-124 (394)
104 2gkg_A Response regulator homo 99.6 2E-15 6.9E-20 144.8 13.5 119 963-1095 6-125 (127)
105 1ny5_A Transcriptional regulat 99.6 2.4E-15 8.1E-20 175.0 16.5 118 964-1096 2-119 (387)
106 3cz5_A Two-component response 99.6 3.2E-15 1.1E-19 149.5 14.9 118 962-1094 5-124 (153)
107 2qvg_A Two component response 99.6 5E-15 1.7E-19 145.8 16.1 125 962-1093 7-133 (143)
108 1mu5_A Type II DNA topoisomera 99.6 1E-15 3.5E-20 180.9 13.0 117 507-666 26-148 (471)
109 3eqz_A Response regulator; str 99.6 1.4E-15 4.8E-20 147.9 11.4 117 962-1094 3-124 (135)
110 1ys7_A Transcriptional regulat 99.6 2.4E-15 8E-20 161.4 13.4 120 962-1096 7-126 (233)
111 2zbk_B Type 2 DNA topoisomeras 99.6 1.6E-15 5.5E-20 181.1 13.2 117 507-666 24-147 (530)
112 3bre_A Probable two-component 99.6 5E-15 1.7E-19 169.8 15.4 118 963-1093 19-137 (358)
113 2qv0_A Protein MRKE; structura 99.6 1.2E-14 4.1E-19 143.3 16.0 120 962-1098 9-130 (143)
114 3kyj_B CHEY6 protein, putative 99.6 2.4E-15 8.3E-20 148.9 10.8 113 961-1088 12-128 (145)
115 2pln_A HP1043, response regula 99.6 1.3E-14 4.3E-19 142.1 15.7 117 960-1096 16-134 (137)
116 2oqr_A Sensory transduction pr 99.6 5.8E-15 2E-19 158.1 13.9 117 963-1095 5-121 (230)
117 2rdm_A Response regulator rece 99.6 1.3E-14 4.5E-19 140.6 14.8 120 961-1096 4-124 (132)
118 3c97_A Signal transduction his 99.6 5.9E-15 2E-19 145.3 12.3 119 963-1095 11-130 (140)
119 2gwr_A DNA-binding response re 99.6 8.7E-15 3E-19 158.1 14.5 116 963-1094 6-121 (238)
120 1th8_A Anti-sigma F factor; SP 99.6 6.5E-15 2.2E-19 146.7 12.0 102 509-667 35-140 (145)
121 2qsj_A DNA-binding response re 99.6 5.1E-15 1.7E-19 148.0 10.8 119 963-1095 4-124 (154)
122 1dc7_A NTRC, nitrogen regulati 99.6 2.3E-16 7.7E-21 151.0 0.3 119 963-1096 4-122 (124)
123 1p2f_A Response regulator; DRR 99.6 1.5E-14 5.1E-19 154.0 14.5 115 963-1095 3-117 (220)
124 2j48_A Two-component sensor ki 99.6 1.7E-14 5.7E-19 136.1 12.8 115 963-1093 2-116 (119)
125 3t8y_A CHEB, chemotaxis respon 99.6 2.3E-14 7.8E-19 145.6 14.3 118 962-1095 25-155 (164)
126 3c3w_A Two component transcrip 99.6 3.3E-15 1.1E-19 160.2 8.1 118 963-1095 2-121 (225)
127 3sy8_A ROCR; TIM barrel phosph 99.6 6.5E-15 2.2E-19 172.1 11.2 120 963-1096 4-129 (400)
128 3klo_A Transcriptional regulat 99.6 2.3E-15 7.9E-20 161.2 6.6 118 963-1094 8-128 (225)
129 2b4a_A BH3024; flavodoxin-like 99.5 8.2E-15 2.8E-19 143.7 9.8 116 960-1094 13-130 (138)
130 1qo0_D AMIR; binding protein, 99.5 1.3E-14 4.4E-19 151.7 11.4 115 961-1095 11-125 (196)
131 2hqr_A Putative transcriptiona 99.5 1E-13 3.6E-18 147.8 14.7 113 964-1095 2-115 (223)
132 3luf_A Two-component system re 99.5 4E-14 1.4E-18 155.5 10.9 103 963-1083 5-108 (259)
133 1w25_A Stalked-cell differenti 99.5 3.2E-12 1.1E-16 151.8 25.8 270 709-1096 2-271 (459)
134 1a2o_A CHEB methylesterase; ba 99.5 3.9E-13 1.3E-17 153.9 16.0 117 963-1095 4-133 (349)
135 2vyc_A Biodegradative arginine 99.4 1.5E-13 5E-18 172.6 10.9 119 964-1096 2-134 (755)
136 2q2e_B Type 2 DNA topoisomeras 99.4 3.7E-13 1.3E-17 162.8 9.3 117 506-666 30-154 (621)
137 3cwo_X Beta/alpha-barrel prote 98.8 6.6E-09 2.2E-13 111.0 6.7 93 987-1094 6-100 (237)
138 1h7s_A PMS1 protein homolog 2; 98.5 1.1E-07 3.9E-12 108.8 8.4 88 513-652 34-127 (365)
139 1kij_A DNA gyrase subunit B; t 98.5 1E-07 3.5E-12 110.1 7.5 89 508-645 31-131 (390)
140 1b63_A MUTL; DNA mismatch repa 98.4 9.5E-07 3.3E-11 100.1 11.1 89 513-653 24-118 (333)
141 3na3_A DNA mismatch repair pro 98.2 3.8E-06 1.3E-10 95.0 10.5 97 513-661 28-131 (348)
142 3zcc_A HAMP, osmolarity sensor 98.1 1.4E-05 4.6E-10 74.5 11.2 77 369-453 37-113 (114)
143 3ke6_A Protein RV1364C/MT1410; 98.1 5.9E-06 2E-10 96.1 9.4 90 510-667 294-387 (399)
144 3h4l_A DNA mismatch repair pro 97.9 1.2E-05 4E-10 91.9 7.6 97 513-661 25-127 (367)
145 1ixm_A SPO0B, protein (sporula 97.7 0.0002 6.7E-09 74.5 12.1 140 397-615 24-171 (192)
146 2wer_A ATP-dependent molecular 97.4 7.9E-05 2.7E-09 79.3 4.4 57 591-651 74-140 (220)
147 3zrx_A AF1503 protein, osmolar 97.4 0.00043 1.5E-08 64.0 8.8 79 369-455 37-115 (115)
148 4dah_A Sporulation kinase D; a 97.2 0.004 1.4E-07 65.1 14.2 116 99-251 55-177 (217)
149 3lid_A Putative sensory BOX/gg 97.1 0.0053 1.8E-07 68.1 14.9 125 104-257 68-206 (295)
150 1s16_A Topoisomerase IV subuni 97.0 0.0014 4.7E-08 75.5 9.3 51 591-641 64-126 (390)
151 3lic_A Sensor protein; PDC fol 97.0 0.0031 1.1E-07 68.2 11.6 129 99-250 57-194 (274)
152 3lif_A Putative diguanylate cy 96.9 0.015 5E-07 62.2 16.3 118 100-251 56-181 (254)
153 2ior_A Chaperone protein HTPG; 96.9 0.00026 8.8E-09 76.1 2.2 57 591-651 95-163 (235)
154 1qy5_A Endoplasmin; GRP94, NEC 96.8 0.00023 8E-09 77.6 0.3 23 591-613 76-98 (269)
155 2ayx_A Sensor kinase protein R 96.7 0.0016 5.3E-08 70.5 6.7 98 958-1093 7-104 (254)
156 1yc1_A HSP 86, heat shock prot 96.7 0.0015 5.1E-08 71.1 6.0 59 591-653 116-184 (264)
157 3li9_A Hypothetical sensory tr 96.5 0.0088 3E-07 65.4 10.8 134 99-250 57-202 (291)
158 3lib_A Hypothetical sensory tr 96.3 0.0077 2.6E-07 65.9 9.0 139 99-251 56-202 (290)
159 3c8c_A Methyl-accepting chemot 96.2 0.018 6.2E-07 60.2 10.4 77 172-250 88-173 (240)
160 3n75_A LDC, lysine decarboxyla 96.0 0.0051 1.7E-07 76.2 6.1 104 976-1096 20-124 (715)
161 3cwo_X Beta/alpha-barrel prote 95.6 0.034 1.1E-06 58.4 9.5 72 1017-1091 144-222 (237)
162 1ei1_A DNA gyrase B, GYRB; ATP 95.5 0.032 1.1E-06 64.2 9.5 51 591-641 67-129 (391)
163 3to5_A CHEY homolog; alpha(5)b 95.3 0.08 2.7E-06 51.4 10.1 119 707-891 11-130 (134)
164 3by9_A Sensor protein; histidi 95.2 0.029 1E-06 59.8 7.4 74 171-250 99-177 (260)
165 2gqp_A Endoplasmin; GRP94, HSP 94.9 0.0057 1.9E-07 65.6 0.9 63 591-657 80-157 (236)
166 3t0h_A Heat shock protein HSP 94.5 0.024 8.2E-07 60.2 4.5 65 591-659 80-154 (228)
167 3e4o_A C4-dicarboxylate transp 94.5 0.038 1.3E-06 61.5 6.1 73 172-250 141-218 (305)
168 1y4s_A Chaperone protein HTPG; 94.4 0.058 2E-06 64.6 7.9 48 591-638 75-134 (559)
169 3q7r_A Transcriptional regulat 94.2 0.37 1.3E-05 43.4 10.5 107 963-1096 13-119 (121)
170 2yxb_A Coenzyme B12-dependent 93.0 2.4 8.2E-05 42.2 15.7 120 962-1096 18-146 (161)
171 2cg9_A ATP-dependent molecular 92.9 0.11 3.8E-06 63.3 6.8 22 591-612 74-95 (677)
172 3r0j_A Possible two component 92.6 0.43 1.5E-05 50.7 10.4 117 708-892 23-139 (250)
173 3fv5_A DNA topoisomerase 4 sub 92.6 0.21 7.2E-06 52.0 7.5 49 591-639 50-110 (201)
174 2ioq_A Chaperone protein HTPG; 92.5 0.075 2.6E-06 64.4 4.5 48 591-638 75-134 (624)
175 3peh_A Endoplasmin homolog; st 92.5 0.13 4.3E-06 56.1 5.8 59 591-653 94-163 (281)
176 3o0i_A HSP90AA1 protein; HSP90 92.1 0.074 2.5E-06 57.3 3.3 64 591-658 108-181 (256)
177 2o1u_A Endoplasmin; GRP94, HSP 91.6 0.087 3E-06 64.2 3.5 22 591-612 93-114 (666)
178 3hzh_A Chemotaxis response reg 91.5 0.73 2.5E-05 44.8 9.7 118 708-891 36-154 (157)
179 3cwv_A DNA gyrase, B subunit, 90.4 0.36 1.2E-05 55.0 7.0 19 510-528 27-45 (369)
180 4duh_A DNA gyrase subunit B; s 90.3 0.4 1.4E-05 50.5 6.8 50 592-641 69-130 (220)
181 3gl9_A Response regulator; bet 89.9 1.1 3.7E-05 41.5 8.8 117 709-891 3-119 (122)
182 3i42_A Response regulator rece 89.8 1.2 4.1E-05 41.2 9.2 116 709-891 4-119 (127)
183 3lte_A Response regulator; str 89.6 1.6 5.3E-05 40.6 9.8 118 707-891 5-122 (132)
184 2j48_A Two-component sensor ki 89.1 2.2 7.6E-05 38.2 10.3 40 709-749 2-41 (119)
185 2gkg_A Response regulator homo 88.9 1.9 6.3E-05 39.5 9.7 116 709-891 6-122 (127)
186 3grc_A Sensor protein, kinase; 88.8 2.3 7.8E-05 40.0 10.5 119 708-892 6-125 (140)
187 4emv_A DNA topoisomerase IV, B 88.7 0.49 1.7E-05 50.1 5.9 50 592-641 74-134 (226)
188 3nhm_A Response regulator; pro 88.2 2.7 9.2E-05 39.0 10.5 116 709-892 5-120 (133)
189 1wv2_A Thiazole moeity, thiazo 88.1 2.9 9.8E-05 44.7 11.3 104 970-1092 120-235 (265)
190 3n0r_A Response regulator; sig 88.1 0.84 2.9E-05 49.9 7.7 42 708-750 160-202 (286)
191 3cg4_A Response regulator rece 88.1 2.6 9E-05 39.6 10.4 119 707-891 6-124 (142)
192 1zxm_A TOPO IIA ATPase, DNA to 88.0 0.74 2.5E-05 52.9 7.3 51 591-641 87-149 (400)
193 3t6k_A Response regulator rece 86.8 2 6.8E-05 40.5 8.6 117 709-891 5-121 (136)
194 2lpm_A Two-component response 86.7 0.76 2.6E-05 43.7 5.5 40 708-748 8-48 (123)
195 3lua_A Response regulator rece 86.7 1.7 5.9E-05 40.9 8.1 122 708-892 4-125 (140)
196 3gt7_A Sensor protein; structu 86.5 1.6 5.6E-05 42.1 8.1 120 707-892 6-125 (154)
197 3h5i_A Response regulator/sens 86.4 2.8 9.5E-05 39.5 9.5 114 708-891 5-121 (140)
198 1ccw_A Protein (glutamate muta 85.6 15 0.00052 35.2 14.3 115 963-1092 4-133 (137)
199 3c3m_A Response regulator rece 85.6 3.8 0.00013 38.5 9.9 118 709-892 4-121 (138)
200 1mb3_A Cell division response 85.2 4.9 0.00017 36.6 10.3 117 709-891 2-118 (124)
201 2zay_A Response regulator rece 84.9 2.2 7.6E-05 40.5 8.0 119 707-891 7-125 (147)
202 3nmq_A Heat shock protein HSP 84.8 0.35 1.2E-05 51.5 2.2 58 591-653 87-155 (239)
203 1pvg_A DNA topoisomerase II; G 84.8 1.4 4.8E-05 50.8 7.4 51 591-641 99-161 (418)
204 3hdv_A Response regulator; PSI 84.6 4.7 0.00016 37.5 10.1 119 708-892 7-125 (136)
205 3cnb_A DNA-binding response re 84.5 4 0.00014 38.2 9.5 121 707-892 7-128 (143)
206 3h1g_A Chemotaxis protein CHEY 84.4 3.4 0.00012 38.3 8.9 119 708-891 5-124 (129)
207 3ttz_A DNA gyrase subunit B; p 84.0 1.2 3.9E-05 46.2 5.7 14 591-604 64-77 (198)
208 3cg0_A Response regulator rece 83.8 3.8 0.00013 38.2 9.0 117 707-891 8-125 (140)
209 3f6p_A Transcriptional regulat 83.7 5.1 0.00017 36.6 9.7 114 709-891 3-116 (120)
210 1k68_A Phytochrome response re 83.5 3.3 0.00011 38.5 8.4 125 708-891 2-128 (140)
211 3f6c_A Positive transcription 83.5 4 0.00014 37.8 8.9 115 710-892 3-118 (134)
212 1a2o_A CHEB methylesterase; ba 83.4 24 0.00081 39.5 16.8 41 709-749 4-45 (349)
213 1k66_A Phytochrome response re 83.0 4.2 0.00014 38.3 9.0 127 707-891 5-135 (149)
214 3eod_A Protein HNR; response r 82.8 3.1 0.00011 38.4 7.8 39 707-746 6-44 (130)
215 3heb_A Response regulator rece 82.4 4.8 0.00016 38.4 9.2 127 709-892 5-133 (152)
216 3hdg_A Uncharacterized protein 82.3 3.2 0.00011 38.7 7.8 117 708-892 7-123 (137)
217 3a10_A Response regulator; pho 81.9 9.1 0.00031 34.2 10.6 38 710-748 3-40 (116)
218 3hv2_A Response regulator/HD d 81.7 4.4 0.00015 38.8 8.7 118 707-892 13-131 (153)
219 2qxy_A Response regulator; reg 81.0 4.4 0.00015 38.0 8.3 116 708-892 4-119 (142)
220 3lnu_A Topoisomerase IV subuni 80.6 2 6.9E-05 49.3 6.5 50 592-641 84-145 (408)
221 3ilh_A Two component response 80.4 6.3 0.00022 36.9 9.2 122 709-891 10-136 (146)
222 3kto_A Response regulator rece 80.4 1.9 6.6E-05 40.4 5.4 117 709-892 7-124 (136)
223 1tmy_A CHEY protein, TMY; chem 79.8 8 0.00027 34.9 9.4 40 709-749 3-43 (120)
224 2b4a_A BH3024; flavodoxin-like 79.8 8.7 0.0003 35.7 9.9 37 707-744 14-50 (138)
225 2qr3_A Two-component system re 79.7 5.9 0.0002 36.9 8.7 116 709-892 4-124 (140)
226 3n53_A Response regulator rece 79.5 11 0.00037 35.2 10.5 116 709-891 4-119 (140)
227 3m6m_D Sensory/regulatory prot 79.3 2.9 0.0001 39.7 6.4 40 707-747 13-52 (143)
228 3jte_A Response regulator rece 79.2 7 0.00024 36.6 9.1 117 709-891 4-120 (143)
229 1mvo_A PHOP response regulator 78.5 14 0.00046 34.1 10.8 115 709-891 4-118 (136)
230 2htm_A Thiazole biosynthesis p 78.4 7 0.00024 41.9 9.3 106 970-1093 109-227 (268)
231 2rjn_A Response regulator rece 78.4 5.9 0.0002 37.8 8.4 39 707-746 6-44 (154)
232 1srr_A SPO0F, sporulation resp 78.4 6.8 0.00023 35.7 8.5 40 709-749 4-43 (124)
233 4dad_A Putative pilus assembly 78.2 5.3 0.00018 37.7 7.9 119 707-892 19-139 (146)
234 3kht_A Response regulator; PSI 78.0 6.2 0.00021 37.1 8.3 119 708-892 5-126 (144)
235 1p6q_A CHEY2; chemotaxis, sign 77.6 7.6 0.00026 35.5 8.6 117 709-891 7-124 (129)
236 2pl1_A Transcriptional regulat 77.1 11 0.00039 33.8 9.6 38 710-748 2-39 (121)
237 1dbw_A Transcriptional regulat 76.4 11 0.00037 34.4 9.3 115 709-891 4-118 (126)
238 2qvg_A Two component response 76.1 8.3 0.00029 36.0 8.6 123 708-890 7-131 (143)
239 3ied_A Heat shock protein; HSP 76.0 1.4 4.7E-05 47.2 3.1 56 591-650 131-197 (272)
240 3q58_A N-acetylmannosamine-6-p 76.0 15 0.00051 38.6 11.2 84 976-1077 119-209 (229)
241 3eul_A Possible nitrate/nitrit 75.7 9.2 0.00031 36.3 8.9 118 707-892 14-133 (152)
242 3kcn_A Adenylate cyclase homol 75.7 8.1 0.00028 36.7 8.5 40 708-749 4-43 (151)
243 3crn_A Response regulator rece 75.7 8.6 0.00029 35.6 8.5 39 709-748 4-42 (132)
244 1jbe_A Chemotaxis protein CHEY 75.7 8.7 0.0003 35.1 8.4 117 709-891 5-122 (128)
245 4e7p_A Response regulator; DNA 75.5 6.6 0.00023 37.3 7.8 116 709-892 21-138 (150)
246 3kyj_B CHEY6 protein, putative 75.3 6.1 0.00021 37.3 7.4 43 707-749 12-55 (145)
247 3rqi_A Response regulator prot 74.7 3.3 0.00011 41.4 5.5 40 707-747 6-45 (184)
248 1qkk_A DCTD, C4-dicarboxylate 74.4 5.3 0.00018 38.2 6.8 117 708-892 3-119 (155)
249 3t8y_A CHEB, chemotaxis respon 74.1 13 0.00045 36.0 9.7 42 708-749 25-67 (164)
250 3mm4_A Histidine kinase homolo 73.8 6.8 0.00023 40.0 7.8 89 637-751 15-104 (206)
251 1ys7_A Transcriptional regulat 73.4 15 0.00053 37.6 10.6 115 709-891 8-122 (233)
252 3c97_A Signal transduction his 73.1 20 0.00069 33.3 10.5 38 709-747 11-48 (140)
253 3cfy_A Putative LUXO repressor 73.1 12 0.00042 34.8 8.9 39 710-749 6-44 (137)
254 1zgz_A Torcad operon transcrip 72.8 15 0.00051 33.1 9.2 38 709-747 3-40 (122)
255 1kgs_A DRRD, DNA binding respo 72.8 13 0.00045 37.9 9.7 115 710-892 4-118 (225)
256 2r25_B Osmosensing histidine p 72.3 16 0.00053 33.9 9.4 121 709-891 3-124 (133)
257 3cz5_A Two-component response 72.1 11 0.00039 35.7 8.6 118 708-892 5-123 (153)
258 2qv0_A Protein MRKE; structura 71.9 19 0.00067 33.4 10.1 115 708-891 9-124 (143)
259 2jba_A Phosphate regulon trans 71.7 6.6 0.00022 35.8 6.5 116 710-891 4-119 (127)
260 2qzj_A Two-component response 71.3 13 0.00046 34.5 8.7 38 709-747 5-42 (136)
261 1s8n_A Putative antiterminator 71.0 20 0.00067 36.1 10.5 114 709-891 14-128 (205)
262 3snk_A Response regulator CHEY 71.0 2.2 7.4E-05 40.0 2.9 35 708-743 14-49 (135)
263 2pln_A HP1043, response regula 70.9 13 0.00045 34.4 8.5 42 707-749 17-58 (137)
264 1xhf_A DYE resistance, aerobic 69.9 16 0.00054 33.0 8.7 38 709-747 4-41 (123)
265 1yio_A Response regulatory pro 69.8 11 0.00037 38.1 8.2 116 708-891 4-119 (208)
266 3b2n_A Uncharacterized protein 69.7 16 0.00054 33.7 8.8 115 710-891 5-120 (133)
267 3igs_A N-acetylmannosamine-6-p 69.4 26 0.00087 36.9 11.1 84 976-1077 119-209 (232)
268 2rdm_A Response regulator rece 69.1 20 0.00067 32.7 9.2 39 708-747 5-43 (132)
269 3q9s_A DNA-binding response re 68.3 15 0.00052 38.6 9.3 116 708-892 37-152 (249)
270 3eqz_A Response regulator; str 67.6 7.8 0.00027 35.7 6.1 118 709-893 4-124 (135)
271 2gwr_A DNA-binding response re 67.4 20 0.0007 37.0 9.9 115 709-892 6-120 (238)
272 1dz3_A Stage 0 sporulation pro 67.2 26 0.00088 32.0 9.6 40 710-749 4-44 (130)
273 1a04_A Nitrate/nitrite respons 65.0 19 0.00064 36.5 8.9 117 709-892 6-123 (215)
274 2a9o_A Response regulator; ess 65.0 23 0.00079 31.5 8.7 38 710-748 3-40 (120)
275 1dcf_A ETR1 protein; beta-alph 64.6 26 0.00088 32.2 9.1 37 707-744 6-42 (136)
276 2i2x_B MTAC, methyltransferase 64.0 77 0.0026 33.7 13.8 111 962-1093 123-242 (258)
277 2xij_A Methylmalonyl-COA mutas 63.4 90 0.0031 38.5 15.5 118 963-1095 605-731 (762)
278 1i3c_A Response regulator RCP1 63.1 21 0.00072 33.7 8.3 124 709-891 9-134 (149)
279 2qsj_A DNA-binding response re 63.0 15 0.00051 34.8 7.3 117 710-892 5-122 (154)
280 1y80_A Predicted cobalamin bin 62.9 48 0.0016 34.0 11.5 100 962-1077 88-196 (210)
281 4gfh_A DNA topoisomerase 2; to 59.2 18 0.00061 47.1 8.8 51 591-641 94-156 (1177)
282 1geq_A Tryptophan synthase alp 59.2 26 0.00089 36.8 8.9 53 1032-1089 68-126 (248)
283 1req_A Methylmalonyl-COA mutas 58.8 90 0.0031 38.3 14.4 117 963-1094 597-722 (727)
284 2oqr_A Sensory transduction pr 58.5 25 0.00086 35.9 8.5 115 709-892 5-119 (230)
285 3dzd_A Transcriptional regulat 58.4 10 0.00035 42.9 5.8 40 710-750 2-41 (368)
286 1zh2_A KDP operon transcriptio 56.8 38 0.0013 30.1 8.6 35 710-745 3-37 (121)
287 3cu5_A Two component transcrip 56.5 26 0.00088 32.7 7.6 70 817-891 51-120 (141)
288 3ezx_A MMCP 1, monomethylamine 55.4 39 0.0013 35.0 9.3 100 962-1077 92-202 (215)
289 3bre_A Probable two-component 52.9 28 0.00096 38.4 8.3 117 710-891 20-136 (358)
290 1ny5_A Transcriptional regulat 52.9 27 0.00093 39.6 8.2 114 710-891 2-115 (387)
291 3qja_A IGPS, indole-3-glycerol 51.9 1.4E+02 0.0048 32.0 13.2 85 977-1077 153-241 (272)
292 3o63_A Probable thiamine-phosp 50.0 89 0.0031 33.0 11.1 88 990-1093 140-239 (243)
293 3rht_A (gatase1)-like protein; 48.1 9.6 0.00033 41.0 3.2 50 963-1025 5-58 (259)
294 3ffs_A Inosine-5-monophosphate 47.5 1.7E+02 0.0058 33.3 13.6 100 963-1076 157-273 (400)
295 3f4w_A Putative hexulose 6 pho 47.4 1.5E+02 0.0053 29.8 12.4 110 965-1093 80-207 (211)
296 1xrs_B D-lysine 5,6-aminomutas 47.0 2.3E+02 0.0078 30.2 13.7 116 963-1094 121-257 (262)
297 3l4e_A Uncharacterized peptida 46.5 79 0.0027 32.4 9.8 80 961-1057 26-121 (206)
298 1qo0_D AMIR; binding protein, 45.1 60 0.0021 32.1 8.6 70 816-891 53-122 (196)
299 3eq2_A Probable two-component 44.4 32 0.0011 38.8 7.0 39 709-748 6-44 (394)
300 1xi3_A Thiamine phosphate pyro 44.2 1.4E+02 0.0048 30.0 11.5 68 991-1076 114-188 (215)
301 3sy8_A ROCR; TIM barrel phosph 42.7 43 0.0015 37.9 7.8 75 1015-1092 309-392 (400)
302 1dc7_A NTRC, nitrogen regulati 42.4 15 0.00051 33.0 3.2 34 709-743 4-37 (124)
303 3klo_A Transcriptional regulat 42.3 30 0.001 35.4 5.8 72 816-892 55-127 (225)
304 1ka9_F Imidazole glycerol phos 42.0 2E+02 0.0067 29.8 12.5 53 1033-1090 185-243 (252)
305 3nav_A Tryptophan synthase alp 41.6 27 0.00094 37.6 5.5 55 1031-1089 83-143 (271)
306 2ekc_A AQ_1548, tryptophan syn 41.4 70 0.0024 34.1 8.8 57 1032-1092 81-143 (262)
307 4fo4_A Inosine 5'-monophosphat 41.1 2.7E+02 0.0091 31.2 13.8 100 963-1077 121-239 (366)
308 1yad_A Regulatory protein TENI 40.9 1.1E+02 0.0039 31.2 10.1 82 976-1077 102-191 (221)
309 2jk1_A HUPR, hydrogenase trans 40.9 83 0.0028 28.8 8.3 35 710-746 3-37 (139)
310 3tsm_A IGPS, indole-3-glycerol 38.3 2E+02 0.007 30.8 11.7 97 976-1088 159-264 (272)
311 3vnd_A TSA, tryptophan synthas 38.1 26 0.00091 37.7 4.7 55 1033-1091 83-143 (267)
312 2w6r_A Imidazole glycerol phos 37.8 1.2E+02 0.0042 31.8 10.1 52 1033-1089 189-246 (266)
313 1j8m_F SRP54, signal recogniti 37.6 47 0.0016 36.2 6.7 62 962-1032 126-193 (297)
314 1xm3_A Thiazole biosynthesis p 35.9 79 0.0027 33.7 8.1 41 1032-1077 166-206 (264)
315 1geq_A Tryptophan synthase alp 35.8 2E+02 0.0067 29.8 11.2 86 975-1078 122-220 (248)
316 2xxa_A Signal recognition part 35.5 55 0.0019 37.7 7.2 60 962-1025 129-191 (433)
317 3kp1_A D-ornithine aminomutase 35.3 2.5E+02 0.0084 33.9 12.3 116 963-1094 603-734 (763)
318 3c3w_A Two component transcrip 34.2 22 0.00076 36.4 3.3 116 710-892 3-119 (225)
319 1p2f_A Response regulator; DRR 33.4 70 0.0024 32.2 7.0 71 817-892 45-115 (220)
320 1qop_A Tryptophan synthase alp 33.3 42 0.0014 35.9 5.4 57 1032-1092 81-143 (268)
321 2oo3_A Protein involved in cat 31.6 37 0.0013 36.8 4.5 71 962-1041 113-184 (283)
322 2gjl_A Hypothetical protein PA 31.2 3.1E+02 0.011 29.8 12.3 81 980-1077 112-200 (328)
323 2lci_A Protein OR36; structura 31.1 1.1E+02 0.0037 27.0 6.5 41 965-1005 80-120 (134)
324 2p10_A MLL9387 protein; putati 30.7 1.2E+02 0.0041 32.7 8.2 85 982-1078 159-259 (286)
325 3khj_A Inosine-5-monophosphate 30.4 2.3E+02 0.0079 31.6 11.0 89 973-1076 132-234 (361)
326 3kcp_B Cellulosome anchoring p 30.4 21 0.00073 35.3 2.1 29 150-178 61-90 (187)
327 4adt_A Pyridoxine biosynthetic 29.9 3.1E+02 0.011 29.7 11.6 55 1033-1092 196-257 (297)
328 2hqr_A Putative transcriptiona 29.4 62 0.0021 32.7 5.7 36 710-746 2-37 (223)
329 2tps_A Protein (thiamin phosph 29.2 2.8E+02 0.0094 28.1 10.8 68 992-1076 123-198 (227)
330 2bm3_A Type 2 cohesin, scaffol 28.8 24 0.00081 34.5 2.1 17 150-166 49-65 (166)
331 3r2g_A Inosine 5'-monophosphat 28.7 6.4E+02 0.022 28.0 14.2 95 963-1076 113-226 (361)
332 1h5y_A HISF; histidine biosynt 28.6 3.6E+02 0.012 27.4 11.8 54 1032-1090 186-245 (253)
333 1thf_D HISF protein; thermophI 28.6 2.5E+02 0.0085 29.1 10.5 68 1018-1090 165-242 (253)
334 4e38_A Keto-hydroxyglutarate-a 28.3 2.2E+02 0.0075 29.7 9.7 97 978-1090 27-124 (232)
335 2v82_A 2-dehydro-3-deoxy-6-pho 27.4 1.4E+02 0.0048 30.2 8.1 97 980-1095 95-199 (212)
336 3usb_A Inosine-5'-monophosphat 27.2 6.5E+02 0.022 29.3 14.7 101 963-1077 269-387 (511)
337 4gud_A Imidazole glycerol phos 27.2 84 0.0029 31.9 6.2 35 963-997 3-37 (211)
338 3qz6_A HPCH/HPAI aldolase; str 27.1 3.9E+02 0.013 28.2 11.7 85 994-1092 25-110 (261)
339 3s83_A Ggdef family protein; s 27.1 1.2E+02 0.004 31.8 7.5 101 977-1091 143-254 (259)
340 3bo9_A Putative nitroalkan dio 25.8 3.1E+02 0.011 29.9 11.0 80 980-1076 118-203 (326)
341 4dzz_A Plasmid partitioning pr 25.8 2E+02 0.0067 28.3 8.7 53 961-1025 29-83 (206)
342 3fwz_A Inner membrane protein 25.5 2.8E+02 0.0097 25.7 9.3 94 962-1077 30-124 (140)
343 2v5j_A 2,4-dihydroxyhept-2-ENE 25.4 4.6E+02 0.016 28.1 12.0 73 1016-1091 59-132 (287)
344 1eep_A Inosine 5'-monophosphat 25.2 3.3E+02 0.011 30.7 11.4 91 973-1077 180-284 (404)
345 2px0_A Flagellar biosynthesis 25.2 1.5E+02 0.0051 32.1 8.0 59 962-1032 134-195 (296)
346 1p0z_A Sensor kinase CITA; tra 25.1 45 0.0015 31.2 3.4 46 176-225 78-128 (131)
347 3kts_A Glycerol uptake operon 25.1 1.1E+02 0.0036 31.2 6.3 52 1017-1077 127-178 (192)
348 4avf_A Inosine-5'-monophosphat 24.5 5.9E+02 0.02 29.5 13.6 100 963-1077 242-360 (490)
349 3by8_A Sensor protein DCUS; hi 24.4 1.3E+02 0.0046 28.3 6.7 58 161-230 76-138 (142)
350 1rd5_A Tryptophan synthase alp 23.9 1.6E+02 0.0053 31.1 7.8 89 994-1095 30-142 (262)
351 3bul_A Methionine synthase; tr 23.0 4E+02 0.014 31.7 11.7 101 962-1077 98-210 (579)
352 2vws_A YFAU, 2-keto-3-deoxy su 22.6 5.9E+02 0.02 26.8 12.1 73 1016-1091 38-111 (267)
353 1wa3_A 2-keto-3-deoxy-6-phosph 22.5 3.6E+02 0.012 26.8 10.0 94 981-1089 6-100 (205)
354 1x1o_A Nicotinate-nucleotide p 21.5 3.6E+02 0.012 29.0 10.1 90 965-1075 169-265 (286)
355 2fli_A Ribulose-phosphate 3-ep 21.3 90 0.0031 31.8 5.1 73 1017-1090 131-215 (220)
356 1jcn_A Inosine monophosphate d 20.9 4.5E+02 0.015 30.6 11.7 90 974-1080 283-390 (514)
357 2qhk_A Methyl-accepting chemot 20.5 2.5E+02 0.0087 27.3 8.1 30 221-250 48-78 (174)
358 2gek_A Phosphatidylinositol ma 20.4 3.7E+02 0.013 29.2 10.5 108 963-1096 241-350 (406)
359 1ls1_A Signal recognition part 20.4 2.7E+02 0.0093 29.9 8.9 58 962-1026 126-189 (295)
360 1tqj_A Ribulose-phosphate 3-ep 20.2 1.3E+02 0.0043 31.3 6.0 57 1031-1093 49-109 (230)
361 3bw2_A 2-nitropropane dioxygen 20.1 5.9E+02 0.02 28.1 12.0 76 984-1076 143-235 (369)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=1.2e-37 Score=342.16 Aligned_cols=233 Identities=26% Similarity=0.371 Sum_probs=191.1
Q ss_pred HHHHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 001330 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA--NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKME 462 (1099)
Q Consensus 385 ~~ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~--~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~ 462 (1099)
++.++..+.|..|++++||||||||++|.|+++++.... ...++.+++++.|..++.+|..++++++++++++.+...
T Consensus 11 ~~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~ 90 (258)
T 2c2a_A 11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQ 90 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 344455566788999999999999999999999886532 123456789999999999999999999999999999999
Q ss_pred ceEEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC----eEEEEE
Q 001330 463 LVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG----HISVRA 538 (1099)
Q Consensus 463 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G----~I~v~~ 538 (1099)
+..+++++.+++++++..+...+..+++.+.++.... .+..+.+|+.+|.|||.|||+||+||++.| .|.+.+
T Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~ 167 (258)
T 2c2a_A 91 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVP---CPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVIL 167 (258)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSC---SCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEE
T ss_pred CccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCC---CCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEE
Confidence 9999999999999999999999999999988764322 134678999999999999999999999754 355544
Q ss_pred EEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccc
Q 001330 539 AVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKE 618 (1099)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~ 618 (1099)
.... ..+.|.|.|+|+|||++.+++||+|||+.+.
T Consensus 168 ~~~~---------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 202 (258)
T 2c2a_A 168 DEKD---------------------------------------------GGVLIIVEDNGIGIPDHAKDRIFEQFYRVDS 202 (258)
T ss_dssp EEET---------------------------------------------TEEEEEEEECSSCCCGGGTTGGGSTTCCCC-
T ss_pred ecCC---------------------------------------------CeEEEEEEecCCCCCHHHHHhhccccccCCC
Confidence 3221 1578999999999999999999999999987
Q ss_pred cCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 619 TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 619 s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
++....+|+||||+|||++|+.|||+|++.+.+ +.||+|+|.+|...
T Consensus 203 ~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~--~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 203 SLTYEVPGTGLGLAITKEIVELHGGRIWVESEV--GKGSRFFVWIPKDR 249 (258)
T ss_dssp --------CCCTHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEECCC
T ss_pred CCCCCCCCcchHHHHHHHHHHHcCCEEEEEecC--CCCcEEEEEeeCCC
Confidence 655555799999999999999999999998775 36999999999753
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=1.3e-32 Score=302.93 Aligned_cols=224 Identities=26% Similarity=0.416 Sum_probs=196.4
Q ss_pred HHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEE
Q 001330 387 AERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEE 466 (1099)
Q Consensus 387 ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~ 466 (1099)
.++....+..|++.++|||||||++|.++++++.......++..++++.|..+++++..++++++++++++.+...+..+
T Consensus 33 l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~ 112 (268)
T 4ew8_A 33 LAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIE 112 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 33444556789999999999999999999999987665667788999999999999999999999999999999999999
Q ss_pred EecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC-CeEEEEEEEecccc
Q 001330 467 EFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE-GHISVRAAVKKKSF 545 (1099)
Q Consensus 467 ~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~ 545 (1099)
++++.+++++++..+...+..+++.+.++.+... ..+.+|+..|.||+.|||+||+||++. |.|.|.+.....
T Consensus 113 ~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~----~~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~~~-- 186 (268)
T 4ew8_A 113 DIRVSDLLLNAQERALKDAQLGGVTLAVECEEDV----GLIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRALG-- 186 (268)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTS----CEEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEECSS--
T ss_pred eccHHHHHHHHHHHHHhhhhccCceEEEEcCCCC----ceEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEecCC--
Confidence 9999999999999999999999999999865432 368899999999999999999999987 677776643221
Q ss_pred chhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCC
Q 001330 546 KQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625 (1099)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~ 625 (1099)
.+.|.|.|+|+||+++.++++|++|++.+ .+
T Consensus 187 -------------------------------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~------~~ 217 (268)
T 4ew8_A 187 -------------------------------------------EVRLDVSDTGRGVPFHVQAHIFDRFVGRD------RG 217 (268)
T ss_dssp -------------------------------------------EEEEEEEESSCCCCHHHHTTTTSTTCCCS------SC
T ss_pred -------------------------------------------EEEEEEEcCCCCCCHHHHHHHHHHHhcCC------CC
Confidence 57899999999999999999999999643 25
Q ss_pred CccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 626 GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
|+||||+|||++++.|||+|++.+.. +.|++|+|.+|+..
T Consensus 218 g~GlGL~i~~~~~~~~gG~i~i~s~~--~~Gt~~~i~lP~~~ 257 (268)
T 4ew8_A 218 GPGLGLALVKALVELHGGWVALESEP--GNGSTFTCHLPETQ 257 (268)
T ss_dssp CCTTHHHHHHHHHHHTTCEEEEEECT--TSCEEEEEEEECCC
T ss_pred CCcccHHHHHHHHHHcCCEEEEEecC--CCCEEEEEEecCCC
Confidence 99999999999999999999998765 36999999999854
No 3
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=100.00 E-value=1.3e-32 Score=321.67 Aligned_cols=222 Identities=15% Similarity=0.163 Sum_probs=184.0
Q ss_pred HHHHHHhHHHhHH-----HHHHHHHHHHHHhcC---CCCChHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHhhcCCCcc
Q 001330 395 TFALAKASHDVRA-----SLAAIIGLVELCHED---ANPGTDLAENLG--LIRTCSKDLLGILNSVME-MSKIEAGKMEL 463 (1099)
Q Consensus 395 ~~fla~~SHELRT-----PLt~I~g~~ell~~~---~~~~~~~~~~l~--~I~~~~~~L~~LIndlLd-lskie~g~~~l 463 (1099)
..++++++||||| ||+.|.|+++++... ....++.+++++ .|.+.+.+| +|+++|+ +++. ++...+
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~ 172 (394)
T 2e0a_A 96 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPS 172 (394)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTT
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCC
Confidence 3478899999999 999999999977543 223456788888 699999999 9999999 6776 777777
Q ss_pred eE----EEecHHHHHHHHHHHHHHhHHhc-----CCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCe-
Q 001330 464 VE----EEFNLAQLLEEVVDMYYHVGIKK-----GVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGH- 533 (1099)
Q Consensus 464 ~~----~~~dL~~ll~~v~~~~~~~a~~k-----~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~- 533 (1099)
.. +++++.++++++++.+...+.++ ++.+.++..... .....+.+|+.+|.|||.|||+||+||+++|+
T Consensus 173 ~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~-~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~ 251 (394)
T 2e0a_A 173 HIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFP-DQPIHIVYVPSHLHHMLFELFKNAMRATVEHQE 251 (394)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSST-TSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCC-CCCeEEEEcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77 89999999999999999999999 999988320000 12347899999999999999999999997654
Q ss_pred -------EEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccH
Q 001330 534 -------ISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQ 606 (1099)
Q Consensus 534 -------I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l 606 (1099)
|.|.+.... ..+.|+|.|+|+|||++++
T Consensus 252 ~~~~~~~I~I~~~~~~---------------------------------------------~~v~i~V~D~G~GI~~~~~ 286 (394)
T 2e0a_A 252 NQPSLTPIEVIVVLGK---------------------------------------------EDLTIKISDRGGGVPLRII 286 (394)
T ss_dssp TSSSCCCEEEEEEECS---------------------------------------------SEEEEEEEECSCCCCGGGH
T ss_pred ccCCCCCEEEEEEeCC---------------------------------------------CEEEEEEEeCCCCcCHHHH
Confidence 877764321 1588999999999999999
Q ss_pred hhhcccccccccc------CCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 607 NSIFEEFVQVKET------ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 607 ~~IFe~F~q~d~s------~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
++||++||+.+.+ +.+..+|+||||+|||++|+.|||+|++.+.+ |.|++|+|.+|...
T Consensus 287 ~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~--g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 287 DRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLS--GYGTDAIIYLKALS 351 (394)
T ss_dssp HHHTSTTCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEESSG
T ss_pred HHHhCcCccCCCCCCcCcCCCCCCCCcccCHHHHHHHHHHhCCEEEEEecC--CccEEEEEEeCCCC
Confidence 9999999999875 55556799999999999999999999998876 36999999999754
No 4
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=100.00 E-value=5.8e-34 Score=303.99 Aligned_cols=216 Identities=21% Similarity=0.308 Sum_probs=131.0
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHH
Q 001330 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473 (1099)
Q Consensus 394 k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~l 473 (1099)
+.+|++.+||||||||++|.++++++.......++..++++.|..+++++..++++++++++++.+......+++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 45689999999999999999999998755444455577888899999999999999999999999998899999999999
Q ss_pred HHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCe-EEEEEEEeccccchhhhhc
Q 001330 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGH-ISVRAAVKKKSFKQDIIAS 552 (1099)
Q Consensus 474 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~-I~v~~~~~~~~~~~~~~~~ 552 (1099)
+++++..+...+..+++.+.++.+.. ...+.+|+.+|.||+.|||+||+||++.|. |.+.+. ..
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~--~~--------- 146 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAH----SIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLN--AD--------- 146 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSC----SCEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEEC--SS---------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCc----ceEEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEc--cC---------
Confidence 99999999999999999998876543 246889999999999999999999997764 555431 10
Q ss_pred cccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHH
Q 001330 553 NRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLG 632 (1099)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 632 (1099)
. |.|.|+|+||+++.+++||++|++.+.. ..+|+||||+
T Consensus 147 ------------------------------------~--i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~~g~GlGL~ 185 (222)
T 3jz3_A 147 ------------------------------------N--FIVRDNGPGVTPEALARIGERFYRPPGQ---TATGSGLGLS 185 (222)
T ss_dssp ------------------------------------E--EEEECSCC-----------------------------CTHH
T ss_pred ------------------------------------e--EEEEECCCCCCHHHHHHHHhhhccCCCC---CCCcccccHH
Confidence 1 8899999999999999999999986542 2359999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 633 IVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 633 Ivk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
|||++++.|||+|++.+.+ ++||+|+|.+|.+.
T Consensus 186 i~~~i~~~~gG~i~i~s~~--~~Gt~v~~~~P~~~ 218 (222)
T 3jz3_A 186 IVQRIAKLHGMNVEFGNAE--QGGFEAKVSWLEHH 218 (222)
T ss_dssp HHHHHHHHTTCEEECCBCT--TSSBEEEEECCCC-
T ss_pred HHHHHHHHcCCEEEEEcCC--CCcEEEEEeecCCC
Confidence 9999999999999997765 35999999998753
No 5
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=100.00 E-value=5e-33 Score=325.20 Aligned_cols=222 Identities=18% Similarity=0.206 Sum_probs=172.6
Q ss_pred HHHHHhHHHhHH-----HHHHHHHHHHHHhcCCCC---ChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhc-CCCcce
Q 001330 396 FALAKASHDVRA-----SLAAIIGLVELCHEDANP---GTDLAENLG--LIRTCSKDLLGILNSVMEMSKIEA-GKMELV 464 (1099)
Q Consensus 396 ~fla~~SHELRT-----PLt~I~g~~ell~~~~~~---~~~~~~~l~--~I~~~~~~L~~LIndlLdlskie~-g~~~l~ 464 (1099)
.++++++||||| ||+.|.|+++++...... .++.+++++ .|...+.+| +++++|++++.++ +...+.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 478999999999 999999999998643222 233455777 488889999 9999999999988 677777
Q ss_pred E----EEecHHHHHHHHHHHHHHhHHh-----cCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCe--
Q 001330 465 E----EEFNLAQLLEEVVDMYYHVGIK-----KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGH-- 533 (1099)
Q Consensus 465 ~----~~~dL~~ll~~v~~~~~~~a~~-----k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~-- 533 (1099)
. +++++.++++++++.+...+.+ +++.+.+...... .....+.+|+.+|.|||.|||+||+||+++|+
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~-~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~ 253 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANS-KQPIHMVYVPSHLYHMLFELFKNAMRATVESHES 253 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTST-TSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCC-CCCeEEEecHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 7 9999999999999999999987 9999987321000 12347899999999999999999999998765
Q ss_pred ------EEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHh
Q 001330 534 ------ISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQN 607 (1099)
Q Consensus 534 ------I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~ 607 (1099)
|.|.+...+ ..+.|+|.|+|+|||+++++
T Consensus 254 ~~~~~~I~I~~~~~~---------------------------------------------~~v~i~V~D~G~GI~~~~~~ 288 (394)
T 2btz_A 254 SLILPPIKVMVALGE---------------------------------------------EDLSIKMSDRGGGVPLRKIE 288 (394)
T ss_dssp CSCCCCEEEEEEECS---------------------------------------------SEEEEEEEECSCCCCHHHHH
T ss_pred CCCCCCEEEEEEeCC---------------------------------------------CEEEEEEEeCCCCCCHHHHH
Confidence 777664321 15889999999999999999
Q ss_pred hhcccccccccc-----CCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 608 SIFEEFVQVKET-----ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 608 ~IFe~F~q~d~s-----~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
+||++||+.+.+ +.+..+|+||||+|||.+|+.|||+|++.+.+ |.|++|+|.+|...
T Consensus 289 ~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~--g~Gt~f~i~lP~~~ 351 (394)
T 2btz_A 289 RLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSME--GFGTDAVIYLKALS 351 (394)
T ss_dssp HHTCTTTTCCC--------------CCHHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEESST
T ss_pred HHhcccccCCCCCCcccCCCCCCCccCCHHHHHHHHHHhCCEEEEEecC--CCceEEEEEecCCC
Confidence 999999999876 44555799999999999999999999998876 35999999998743
No 6
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=100.00 E-value=4.3e-32 Score=318.55 Aligned_cols=221 Identities=14% Similarity=0.164 Sum_probs=178.4
Q ss_pred HHHHhHHHhHH-----HHHHHHHHHHHHhcCCC---CChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhc----C---
Q 001330 397 ALAKASHDVRA-----SLAAIIGLVELCHEDAN---PGTDLAENLGL--IRTCSKDLLGILNSVMEMSKIEA----G--- 459 (1099)
Q Consensus 397 fla~~SHELRT-----PLt~I~g~~ell~~~~~---~~~~~~~~l~~--I~~~~~~L~~LIndlLdlskie~----g--- 459 (1099)
++++++||||| ||++|.|+++++..... ..++.+++++. +...+.+| ||+++|++++.|. +
T Consensus 108 ~f~~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~~~ 185 (407)
T 2q8g_A 108 DFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSHRK 185 (407)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC----------C
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCCcc
Confidence 45566699999 99999999998764321 22445777887 77788898 9999999999986 3
Q ss_pred CCcceEEEecHHHHHHHHHHHHHHhHHhc-----CCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC--
Q 001330 460 KMELVEEEFNLAQLLEEVVDMYYHVGIKK-----GVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG-- 532 (1099)
Q Consensus 460 ~~~l~~~~~dL~~ll~~v~~~~~~~a~~k-----~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-- 532 (1099)
.+.+..+++++.++++++++.+...+.++ ++.+.++.+... .....+.+|+.+|.|||.|||+||+||+++|
T Consensus 186 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~-~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~ 264 (407)
T 2q8g_A 186 HIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSP-GQPIQVVYVPSHLYHMVFELFKNAMRATMEHHA 264 (407)
T ss_dssp CBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSST-TSCCEEEECHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCC-CCCeEEEEcHHHHHHHHHHHHHHHHHHHhhccc
Confidence 66788899999999999999999999988 999888541000 1234789999999999999999999999765
Q ss_pred ------eEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccH
Q 001330 533 ------HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQ 606 (1099)
Q Consensus 533 ------~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l 606 (1099)
.|.|.+.... ..+.|+|.|+|+|||++++
T Consensus 265 ~~~~~~~I~I~~~~~~---------------------------------------------~~v~i~V~D~G~GI~~e~~ 299 (407)
T 2q8g_A 265 NRGVYPPIQVHVTLGN---------------------------------------------EDLTVKMSDRGGGVPLRKI 299 (407)
T ss_dssp TTCCCCCEEEEEEECS---------------------------------------------SEEEEEEEECSCCCCHHHH
T ss_pred cCCCCCCEEEEEEeCC---------------------------------------------CEEEEEEEecCCCCCHHHH
Confidence 4777664321 1588999999999999999
Q ss_pred hhhcccccccccc------CCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 607 NSIFEEFVQVKET------ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 607 ~~IFe~F~q~d~s------~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
++||++||+.+.+ +.+..+|+||||+|||.+++.|||+|++.+.+ |.||+|+|.+|...
T Consensus 300 ~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~--g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 300 DRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLE--GYGTDAVIYIKALS 364 (407)
T ss_dssp GGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEESSG
T ss_pred HHHhCccccCCCCCCccccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcC--CCceEEEEEECCCC
Confidence 9999999999876 23445799999999999999999999998876 35999999998753
No 7
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=8.1e-32 Score=314.28 Aligned_cols=223 Identities=14% Similarity=0.188 Sum_probs=187.3
Q ss_pred HHHhHHHHHHHhHHHhHHHHHHHH-HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEe
Q 001330 390 KSMNKTFALAKASHDVRASLAAII-GLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEF 468 (1099)
Q Consensus 390 ~~~~k~~fla~~SHELRTPLt~I~-g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~ 468 (1099)
.+..+..++++++||+||||++|. |+.+++. ....+++.+++++.|..+..+|..|+++++++++++.+...+..+++
T Consensus 117 ~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~-~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 117 DEAQYCQLVRQLLDDHKDVVTLLAEGLRESRK-HIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSS-SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCC
Confidence 345677899999999999999998 7776654 33335668899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhHHhc-----CCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC---------eE
Q 001330 469 NLAQLLEEVVDMYYHVGIKK-----GVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG---------HI 534 (1099)
Q Consensus 469 dL~~ll~~v~~~~~~~a~~k-----~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G---------~I 534 (1099)
++.++++++++.+...+..+ ++.+..+.+ ..+.+|+.+|.|||.|||+||+||+.+| .|
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~-------~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I 268 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA-------ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDV 268 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTT-------CCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCE
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCC-------CceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCE
Confidence 99999999999999999988 666655432 2477899999999999999999999765 57
Q ss_pred EEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccc
Q 001330 535 SVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFV 614 (1099)
Q Consensus 535 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~ 614 (1099)
.|.+...+ ..+.|.|.|+|+|||++.+++||++||
T Consensus 269 ~I~~~~~~---------------------------------------------~~v~i~V~D~G~GI~~~~~~~iF~~f~ 303 (388)
T 1gkz_A 269 VITIANND---------------------------------------------VDLIIRISDRGGGIAHKDLDRVMDYHF 303 (388)
T ss_dssp EEEEEECS---------------------------------------------SEEEEEEECCSCCCCTTTTTTTTSTTC
T ss_pred EEEEEeCC---------------------------------------------CEEEEEEEEeCCCcCHHHHHHhcCccc
Confidence 77654321 158899999999999999999999999
Q ss_pred cccccC--------------------CCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 615 QVKETA--------------------LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 615 q~d~s~--------------------~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
+.+..+ .+..+|+||||+|||.+|+.|||+|++.|.+ |.||+|+|.+|...
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~--g~Gt~f~i~LP~~~ 374 (388)
T 1gkz_A 304 TTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ--GIGTDVYLRLRHID 374 (388)
T ss_dssp CCC-------------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEECSS
T ss_pred ccCCCcccccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecC--CCcEEEEEEecCCC
Confidence 988743 1223699999999999999999999998876 46999999998753
No 8
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.98 E-value=9e-32 Score=316.95 Aligned_cols=220 Identities=16% Similarity=0.170 Sum_probs=168.5
Q ss_pred HHHhHHHhHHHHH-----HHHHHHHHHhcCCC---CChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh-cCCCc----
Q 001330 398 LAKASHDVRASLA-----AIIGLVELCHEDAN---PGTDLAENLGLIRTC--SKDLLGILNSVMEMSKIE-AGKME---- 462 (1099)
Q Consensus 398 la~~SHELRTPLt-----~I~g~~ell~~~~~---~~~~~~~~l~~I~~~--~~~L~~LIndlLdlskie-~g~~~---- 462 (1099)
+++++|||||||+ .|.|+++++..... ..++.+++++.|..+ +.+| +|+++|.+.+.+ .+...
T Consensus 121 f~~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~~~~~ 198 (419)
T 1y8o_A 121 FLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHPKHIG 198 (419)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSSTTSBT
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCCCccc
Confidence 4677799999999 88999997754211 234567788886666 7788 999998776653 34333
Q ss_pred ceEEEecHHHHHHHHHHHHHHhHHh-----cCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC-----
Q 001330 463 LVEEEFNLAQLLEEVVDMYYHVGIK-----KGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG----- 532 (1099)
Q Consensus 463 l~~~~~dL~~ll~~v~~~~~~~a~~-----k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G----- 532 (1099)
...+++++.++++++++.+...+.+ +++.+.+...... .....+.+|+.+|.|||.|||+||+||+++|
T Consensus 199 ~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~~~~ 277 (419)
T 1y8o_A 199 SIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAP-DKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDRK 277 (419)
T ss_dssp TBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTST-TSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred cccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCC-CCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 3448999999999999999998887 8888887321100 1235789999999999999999999999765
Q ss_pred ----eEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhh
Q 001330 533 ----HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNS 608 (1099)
Q Consensus 533 ----~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~ 608 (1099)
.|.|.+...+ ..+.|+|.|+|+|||++++++
T Consensus 278 ~~~~~I~I~~~~~~---------------------------------------------~~v~I~V~D~G~GI~~e~l~~ 312 (419)
T 1y8o_A 278 EGYPAVKTLVTLGK---------------------------------------------EDLSIKISDLGGGVPLRKIDR 312 (419)
T ss_dssp SCCCCEEEEEEECS---------------------------------------------SEEEEEEEECSCCCCHHHHGG
T ss_pred CCCCCEEEEEEeCC---------------------------------------------CEEEEEEEECCCCCCHHHHHH
Confidence 4777654321 158899999999999999999
Q ss_pred hcccccccccc------CCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 609 IFEEFVQVKET------ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 609 IFe~F~q~d~s------~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
||++||+.+.+ +++..+|+||||+|||++|+.|||+|++.|.+ |.|++|+|.+|...
T Consensus 313 iF~~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~--g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 313 LFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSME--GVGTDAVIYLKALS 375 (419)
T ss_dssp GGCTTTC-------------CC--CTTHHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEESCG
T ss_pred HhCcccccCCCCCccccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecC--CCCEEEEEEecCCC
Confidence 99999999875 44456799999999999999999999998876 36999999998754
No 9
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.97 E-value=3.7e-31 Score=302.11 Aligned_cols=213 Identities=26% Similarity=0.413 Sum_probs=178.2
Q ss_pred hHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHH
Q 001330 393 NKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQ 472 (1099)
Q Consensus 393 ~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ 472 (1099)
.+..|++.++|||||||++|.++++++......+++..++++.|..++.++..++++++++++. ...+..+++++.+
T Consensus 131 ~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~~ 207 (349)
T 3a0r_A 131 ILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLNE 207 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccCCcccCHHH
Confidence 4567899999999999999999999997655445556789999999999999999999999994 3457789999999
Q ss_pred HHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccC-CCeEEEEEEEeccccchhhhh
Q 001330 473 LLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTS-EGHISVRAAVKKKSFKQDIIA 551 (1099)
Q Consensus 473 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~-~G~I~v~~~~~~~~~~~~~~~ 551 (1099)
++++++..+...+..+++.+.++.+.. ...+.+|+.+|.||+.||++||+||++ .|.|.|.+.....
T Consensus 208 ~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~-------- 275 (349)
T 3a0r_A 208 LIREVYVLFEEKIRKMNIDFCFETDNE----DLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYT-------- 275 (349)
T ss_dssp HHHHHHHHHHHHHTTTTCCCEEEESCS----CCEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETT--------
T ss_pred HHHHHHHHHHHHHHHcCcEEEEecCCC----CceEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEecCC--------
Confidence 999999999999999998887765432 246899999999999999999999995 5678776643221
Q ss_pred ccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccH
Q 001330 552 SNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631 (1099)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGL 631 (1099)
.+.|+|.|+|+|||++.+++||+|||+.+ .+|+||||
T Consensus 276 -------------------------------------~~~i~v~D~G~Gi~~~~~~~if~~f~~~~------~~g~GlGL 312 (349)
T 3a0r_A 276 -------------------------------------KVRVSVWNSGPPIPEELKEKIFSPFFTTK------TQGTGLGL 312 (349)
T ss_dssp -------------------------------------EEEEEEEEESCCCCGGGGTTTSSSCCCC------------CCC
T ss_pred -------------------------------------EEEEEEEECCCCCChHHHhhcCCCCccCC------CCCccchH
Confidence 57899999999999999999999999764 25999999
Q ss_pred HHHHHHHH-hcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 632 GIVQSMVH-LMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 632 aIvk~lVe-~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
+|||++|+ .|||.|++.+. + .|++|+|.+|+.
T Consensus 313 ~i~~~~v~~~~gg~i~~~~~-~--~Gt~f~i~lP~~ 345 (349)
T 3a0r_A 313 SICRKIIEDEHGGKIWTENR-E--NGVVFIFEIPKT 345 (349)
T ss_dssp THHHHHHHHTTCSBCCEEEC-S--SEEEEEEEEESC
T ss_pred HHHHHHHHHhCCCEEEEEeC-C--CcEEEEEEecCC
Confidence 99999999 89999999765 2 399999999974
No 10
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.97 E-value=4.6e-31 Score=285.72 Aligned_cols=213 Identities=22% Similarity=0.349 Sum_probs=182.4
Q ss_pred hHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHH
Q 001330 393 NKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQ 472 (1099)
Q Consensus 393 ~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ 472 (1099)
.+..|++.++|||||||++|.++++++.......++..++++.|..+++++..++++++++++.+.+ ..+++++..
T Consensus 13 ~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l~~ 88 (244)
T 3d36_A 13 AVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNVKL 88 (244)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEHHH
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhHHH
Confidence 4567889999999999999999999998776666778899999999999999999999999997765 457899999
Q ss_pred HHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC-CeEEEEEEEeccccchhhhh
Q 001330 473 LLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE-GHISVRAAVKKKSFKQDIIA 551 (1099)
Q Consensus 473 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~ 551 (1099)
++++++..+...+..+++.+.++.++ ..+.+|+..|.||+.||++||+||++. |.|.|.+...+.
T Consensus 89 ~l~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~-------- 154 (244)
T 3d36_A 89 EIERVIDILRPLANMSCVDIQATLAP------FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNG-------- 154 (244)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEEECCC------CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEETT--------
T ss_pred HHHHHHHHHHHHHHhcCeEEeccCCC------ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeCC--------
Confidence 99999999999999999999887532 368899999999999999999999954 567776543221
Q ss_pred ccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccH
Q 001330 552 SNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631 (1099)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGL 631 (1099)
.+.|+|.|+|+||+++.++++|++|++.+. .+|+||||
T Consensus 155 -------------------------------------~~~i~i~D~G~gi~~~~~~~if~~~~~~~~-----~~g~GlGL 192 (244)
T 3d36_A 155 -------------------------------------RVLIRIADTGVGMTKEQLERLGEPYFTTKG-----VKGTGLGM 192 (244)
T ss_dssp -------------------------------------EEEEEEEECSSCCCHHHHHHTTSTTCCSSG-----GGCCSCHH
T ss_pred -------------------------------------EEEEEEEecCCCCCHHHHHHHhcccccCCC-----CCCcchhH
Confidence 578999999999999999999999998653 25899999
Q ss_pred HHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 632 GIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 632 aIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
+|||++++.|||+|++.+.+ +.|++|+|.+|+..
T Consensus 193 ~i~~~i~~~~gG~i~~~~~~--~~G~~~~i~lP~~~ 226 (244)
T 3d36_A 193 MVVYRIIESMNGTIRIESEI--HKGTTVSIYLPLAS 226 (244)
T ss_dssp HHHHHHHHHTTCEEEEEEET--TTEEEEEEEEECCC
T ss_pred HHHHHHHHHcCCEEEEEecC--CCcEEEEEEecCCC
Confidence 99999999999999998765 35999999999864
No 11
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.97 E-value=1.6e-29 Score=276.65 Aligned_cols=195 Identities=15% Similarity=0.174 Sum_probs=147.4
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHHHH
Q 001330 397 ALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEE 476 (1099)
Q Consensus 397 fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll~~ 476 (1099)
+.+++||||||||++|.|++++|.+.. .++..+++++.|.++++++..++ +++++..+. ....+++++.++.+
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~-~~~~~~~~l~~I~~~~~~~~~ll----~~~r~~~~~-~~~~~~~~~~~l~~- 121 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPS-AQDMRDDAMNLIASSARKLADLL----QFTRVAFGA-SASAENFDSRELEK- 121 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTT-CGGGHHHHHHHHHHHHHHHHHHH----HHHHHHTTC-CSSCCCEEHHHHHH-
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHHHHHHHH----HHHHHhhcc-ccccccccHHHHHH-
Confidence 457899999999999999999997654 34566788999999888776554 566665443 23345677776543
Q ss_pred HHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC-eEEEEEEEeccccchhhhhcccc
Q 001330 477 VVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG-HISVRAAVKKKSFKQDIIASNRN 555 (1099)
Q Consensus 477 v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~~~~~~~ 555 (1099)
.+...+..+++++.++.+.. .++..+.|++.||++||+||++.| .|.|++.....
T Consensus 122 ---~~~~~~~~~~i~l~~~~~~~---------~~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~~------------ 177 (247)
T 4fpp_A 122 ---LAQGVFAHVRPTLDWQIEPQ---------AMNKPSSRAVLNIAQIAASALPAGGVATVKGVAADG------------ 177 (247)
T ss_dssp ---HHHHHHTTSSSEEEECCCSC---------EECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEETT------------
T ss_pred ---HHHHHHHhhhhhccccccch---------hhhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEECC------------
Confidence 33445667889988875432 134678999999999999999875 57776643322
Q ss_pred chhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCC--CCcccHhhhccccccccccCCCCCCCccccHHH
Q 001330 556 VISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKG--IPKDKQNSIFEEFVQVKETALGHQEGLGLGLGI 633 (1099)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G--I~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaI 633 (1099)
.+.|.|.|+|+| |+++.++++|++|++.+ .+|+||||+|
T Consensus 178 ---------------------------------~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~------~~G~GLGLai 218 (247)
T 4fpp_A 178 ---------------------------------RFSIIADAKGPRARLRPEVLAGLKGEPLAEG------LGGPWVQAAY 218 (247)
T ss_dssp ---------------------------------EEEEEEEEESTTCCCCHHHHHHHTTCCCCSS------CHHHHHHHHH
T ss_pred ---------------------------------EEEEEEEEcCCCCCCCHHHHHHhcCCCCCCC------CCCccHHHHH
Confidence 467888888877 67777888888887532 3599999999
Q ss_pred HHHHHHhcCCEEEEEecCCCceeEEEEEEEe
Q 001330 634 VQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664 (1099)
Q Consensus 634 vk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~ 664 (1099)
||+||+.|||+|++++.+ | |++|++.||
T Consensus 219 ~~~iv~~hGG~i~v~s~~--~-G~~f~v~LP 246 (247)
T 4fpp_A 219 LNALVRAAGGQIAVEIGE--D-RASIAAWVP 246 (247)
T ss_dssp HHHHHHHTTCEEEEEEET--T-EEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEEcC--C-EEEEEEEec
Confidence 999999999999998753 3 899999987
No 12
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.93 E-value=1.8e-25 Score=259.69 Aligned_cols=202 Identities=18% Similarity=0.249 Sum_probs=155.0
Q ss_pred HhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHH
Q 001330 392 MNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLA 471 (1099)
Q Consensus 392 ~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~ 471 (1099)
..|..|+++++||||||++.|.++++.+.. +.+.+.+++|.++++++++++.- .+.+++.
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~------------~~i~~~~~~l~~l~~~l~~~~~~--------~~~~~~~ 67 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI------------KELDESLSHLSRITLDLQNVVMK--------IRMVPIS 67 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC------------HHHHHHHHHHHHHHHHHHHHHHH--------HHEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHHHHH--------cceecHH
Confidence 457789999999999999999887765431 45788889999999999998741 2456788
Q ss_pred HHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHH---HHHHHHHHHHHhHhhcc-------------CCCeEE
Q 001330 472 QLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRV---KLKQILCNLVSNSMKFT-------------SEGHIS 535 (1099)
Q Consensus 472 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~---rL~QIL~NLL~NAiKfT-------------~~G~I~ 535 (1099)
++++.+...++..+..++.++.++.... .+..|+. ++.|+|.||++||+||+ +.|.|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~------~~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~ 141 (379)
T 1b3q_A 68 FVFNRFPRMVRDLAKKMNKEVNFIMRGE------DTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLI 141 (379)
T ss_dssp HHHTTHHHHHHHHHHHTTCCEEEEEECT------TCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEcCC------CeeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEE
Confidence 9999999999999888776665554322 1345775 55566999999999996 457788
Q ss_pred EEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccH---------
Q 001330 536 VRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQ--------- 606 (1099)
Q Consensus 536 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l--------- 606 (1099)
+++..... .+.|+|.|+|+||+++++
T Consensus 142 i~~~~~~~---------------------------------------------~v~i~V~D~G~Gi~~~~~~~~a~~~gl 176 (379)
T 1b3q_A 142 LSARHEGN---------------------------------------------NVVIEVEDDGRGIDKEKIIRKAIEKGL 176 (379)
T ss_dssp EEEEEETT---------------------------------------------EEEEEEEECSCCCCHHHHHHHHHHSSS
T ss_pred EEEEEeCC---------------------------------------------EEEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 77643321 588999999999999987
Q ss_pred ---------------hhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 607 ---------------NSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 607 ---------------~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
++||+|||+.....+ ..+|+||||+|||++++.|||+|+++|.+ |+||+|++.+|+..
T Consensus 177 ~~~~~~~~~~~~~~~~~iF~p~fst~~~~~-~~~G~GlGL~iv~~~v~~~gG~i~v~s~~--g~Gt~f~i~lPl~~ 249 (379)
T 1b3q_A 177 IDESKAATLSDQEILNFLFVPGFSTKEKVS-EVSGRGVGMDVVKNVVESLNGSMGIESEK--DKGTKVTIRLPLTL 249 (379)
T ss_dssp CCSTTTTTSCTHHHHSGGGSTTCC------------CCCSHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEESSC
T ss_pred CChhhhhcCCHHHHHHHhcCCCCccCCccC-CCCCccccHHHHHHHHHHCCCEEEEEEcC--CCCeEEEeccCCcc
Confidence 899999998765433 34699999999999999999999998875 46999999999864
No 13
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.91 E-value=3.9e-24 Score=211.30 Aligned_cols=121 Identities=26% Similarity=0.414 Sum_probs=110.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCe-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
+.|||||||++.++..++.+|++.||. |..|.||.+|++.+.+ .+||+||+|++||+|||+|++++||
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~-----------~~~DlillD~~MP~mdG~el~~~ir 80 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK-----------GDFDFVVTDWNMPGMQGIDLLKNIR 80 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH-----------HCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHh-----------CCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 468999999999999999999999986 7789999999999864 3799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+.+. .+++|||++|++...++..+|+++|+++||+|||++++|.++|++++++
T Consensus 81 ~~~~--~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 81 ADEE--LKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp HSTT--TTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred hCCC--CCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 7543 3579999999999999999999999999999999999999999998764
No 14
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.90 E-value=2.4e-23 Score=208.77 Aligned_cols=146 Identities=21% Similarity=0.387 Sum_probs=114.8
Q ss_pred eEEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEecc
Q 001330 464 VEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKK 543 (1099)
Q Consensus 464 ~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~ 543 (1099)
+.+++++.+++++++..+...+ +++.+.++.+. ...+.+|+.+|.||+.|||+||+||++.|.|.|.+.....
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~~~~-----~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~~~ 76 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIY--PDLDVSLVPSP-----TCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRA 76 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHS--TTCEEEECSCC-----CCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETT
T ss_pred cccccCHHHHHHHHHHHHHHhc--cCCceEEccCC-----CceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Confidence 4578999999999999987765 45666666432 2468999999999999999999999998977776643321
Q ss_pred ccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCC
Q 001330 544 SFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH 623 (1099)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~ 623 (1099)
.+.|+|.|+|+||+++.++++|+||++.+.++
T Consensus 77 ---------------------------------------------~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~~--- 108 (150)
T 1ysr_A 77 ---------------------------------------------GVEIAIDDNGSGVPEGERQVVFERFSRGSTAS--- 108 (150)
T ss_dssp ---------------------------------------------EEEEEEEESSSCCCGGGHHHHHTSCC---------
T ss_pred ---------------------------------------------EEEEEEEECCCCCCHHHHHHHhcccccCCCCC---
Confidence 47899999999999999999999999875432
Q ss_pred CCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 624 QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 624 ~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
.+|+||||+|||++++.|||+|++.+.+ +.|++|++.+|+.
T Consensus 109 ~~g~GlGL~i~~~~~~~~gG~i~~~~~~--~~G~~~~i~lP~~ 149 (150)
T 1ysr_A 109 HSGSGLGLALVAQQAQLHGGTASLENSP--LGGARLVLRLPGP 149 (150)
T ss_dssp -----CCCHHHHHHHHHTTCEEEEEECT--TSSEEEEEEEECC
T ss_pred CCCCCcCHHHHHHHHHHcCCEEEEeecC--CCCEEEEEEEeCC
Confidence 3699999999999999999999998765 3589999999863
No 15
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.90 E-value=9e-23 Score=204.68 Aligned_cols=145 Identities=23% Similarity=0.381 Sum_probs=124.5
Q ss_pred EEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEecccc
Q 001330 466 EEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSF 545 (1099)
Q Consensus 466 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~ 545 (1099)
+++++.+++++++..+...+..+++.+.++.+.. ..+.+|+..|.||+.|||+||+||++. .|.|.+.....
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~~~-- 73 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPE-----ISFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQTDE-- 73 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTT-----CEEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEECSS--
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCC-----ceEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEecCC--
Confidence 5799999999999999999999999999986432 358899999999999999999999976 66665533211
Q ss_pred chhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCC
Q 001330 546 KQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625 (1099)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~ 625 (1099)
.+.|+|.|+|+||+++.++++|++|++.+..+ +
T Consensus 74 -------------------------------------------~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~----~ 106 (152)
T 1id0_A 74 -------------------------------------------HLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR----P 106 (152)
T ss_dssp -------------------------------------------CEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC----T
T ss_pred -------------------------------------------EEEEEEEeCCCCcCHHHHHHHhccceeccCCC----C
Confidence 47899999999999999999999999976532 5
Q ss_pred CccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 626 GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
|+||||+|||++++.|||+|.+.+.++ .|++|+|.+|+..
T Consensus 107 g~GlGL~i~~~~~~~~gG~i~~~~~~~--~G~~~~i~lP~~~ 146 (152)
T 1id0_A 107 GQGVGLAVAREITEQYEGKIVAGESML--GGARMEVIFGRQH 146 (152)
T ss_dssp TCCSCHHHHHHHHHHTTCEEEEEECTT--SSEEEEEEECCCC
T ss_pred CcccCHHHHHHHHHHcCCEEEEEeCCC--CcEEEEEEEeccc
Confidence 999999999999999999999987653 5899999998754
No 16
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.89 E-value=2.3e-22 Score=214.20 Aligned_cols=189 Identities=12% Similarity=0.095 Sum_probs=139.3
Q ss_pred hHHHHHHHhHHHhHHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHH
Q 001330 393 NKTFALAKASHDVRASLAAIIGLVELCHEDA-NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLA 471 (1099)
Q Consensus 393 ~k~~fla~~SHELRTPLt~I~g~~ell~~~~-~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~ 471 (1099)
.+..+...+.|++++||++|.++++++.... ..++...+.+..+...+.++...+.+++... .+.++.
T Consensus 27 er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l~ 95 (218)
T 3ehh_A 27 ERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRLK 95 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCHH
Confidence 3455677889999999999999999876432 2334466778888888777777777766432 235788
Q ss_pred HHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhh
Q 001330 472 QLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIA 551 (1099)
Q Consensus 472 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~ 551 (1099)
+.++.+...+ ..+++.+.++...... .....++..+.||+.||++||+||++.|.|.|.+.....
T Consensus 96 ~~l~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~-------- 160 (218)
T 3ehh_A 96 DELINIKQIL----EAADIMFIYEEEKWPE---NISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWK-------- 160 (218)
T ss_dssp HHHHHHHHHH----HHTTCEEECCCCCCCS---CCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEETT--------
T ss_pred HHHHHHHHHH----HhcCCEEEEeCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEeCC--------
Confidence 8877776654 4678888877643221 233568889999999999999999988888887654322
Q ss_pred ccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccH
Q 001330 552 SNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGL 631 (1099)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGL 631 (1099)
.+.|+|.|+|+|||++.. +|+||||
T Consensus 161 -------------------------------------~~~i~V~D~G~Gi~~~~~------------------~g~GlGL 185 (218)
T 3ehh_A 161 -------------------------------------EVVITVSDDGTFKGEENS------------------FSKGHGL 185 (218)
T ss_dssp -------------------------------------EEEEEEEESSCCCC--------------------------CHH
T ss_pred -------------------------------------EEEEEEEECCcCCCCCCC------------------CCCCCCH
Confidence 578999999999999876 4899999
Q ss_pred HHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 632 GIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 632 aIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
+|||++|+.|||+|++.+.+ |++|++.+|+.
T Consensus 186 ~~~~~~v~~~gG~i~~~s~~----Gt~~~i~lP~~ 216 (218)
T 3ehh_A 186 LGMRERLEFANGSLHIDTEN----GTKLTMAIPNN 216 (218)
T ss_dssp HHHHHHHHHTTCEEEEECSS----SEEEEEEEEC-
T ss_pred HHHHHHHHHcCCEEEEeCCC----CeEEEEEEecC
Confidence 99999999999999997653 89999999874
No 17
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.88 E-value=5e-22 Score=198.90 Aligned_cols=145 Identities=30% Similarity=0.494 Sum_probs=123.0
Q ss_pred eEEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccC-CCeEEEEEEEec
Q 001330 464 VEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTS-EGHISVRAAVKK 542 (1099)
Q Consensus 464 ~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~-~G~I~v~~~~~~ 542 (1099)
+.+++++.+++++++..+...+..+++++.++.+.. ...+.+|+..|.||+.||++||+||++ .|.|.|.+....
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~~ 77 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNE----DLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMY 77 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCS----SCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECS
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCC----CcEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEecC
Confidence 467899999999999999999999999998876432 246899999999999999999999995 466777654321
Q ss_pred cccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCC
Q 001330 543 KSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALG 622 (1099)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~ 622 (1099)
..+.|.|.|+|+||+++.++++|++|++.+
T Consensus 78 ---------------------------------------------~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~----- 107 (152)
T 3a0y_A 78 ---------------------------------------------TKVRVSVWNSGPPIPEELKEKIFSPFFTTK----- 107 (152)
T ss_dssp ---------------------------------------------SEEEEEEEEESCCCCGGGTTGGGSTTCCCC-----
T ss_pred ---------------------------------------------CEEEEEEEeCCCCcCHHHHHhHhhhhccCC-----
Confidence 157899999999999999999999999753
Q ss_pred CCCCccccHHHHHHHHH-hcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 623 HQEGLGLGLGIVQSMVH-LMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 623 ~~~GtGLGLaIvk~lVe-~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
.+|+||||+|||++++ .|||++.+.+.. .|++|++.+|+.
T Consensus 108 -~~g~GlGL~i~~~~~~~~~gg~~~~~~~~---~g~~~~i~lP~~ 148 (152)
T 3a0y_A 108 -TQGTGLGLSICRKIIEDEHGGKIWTENRE---NGVVFIFEIPKT 148 (152)
T ss_dssp ---CCCCSHHHHHHHHHTTTSCEEEEEEET---TEEEEEEEEESC
T ss_pred -CCCCCcCHHHHHHHHHHhCCcEEEEecCC---CCEEEEEEeCCC
Confidence 2589999999999999 999999997653 389999999874
No 18
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.88 E-value=3.5e-22 Score=202.86 Aligned_cols=148 Identities=26% Similarity=0.454 Sum_probs=120.9
Q ss_pred cceEEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEe
Q 001330 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541 (1099)
Q Consensus 462 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~ 541 (1099)
++..+++++.++++++++.+.. ..+++++.+ ... ...+.+|+.+|.||+.|||+||+||+ .|.|.|.+...
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~--~~~~i~~~~--~~~----~~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~ 74 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAESG--YEREIETAL--YPG----SIEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTE 74 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCS--SSCCEEEEC--CSS----CCCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEE
T ss_pred cccccccCHHHHHHHHHHHhhh--hcceEEEEe--cCC----CceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEc
Confidence 4567899999999999998653 234444443 221 24688999999999999999999999 78888876533
Q ss_pred ccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCC
Q 001330 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621 (1099)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~ 621 (1099)
.. .+.|.|.|+|+||+++.++++|++||+.+.++.
T Consensus 75 ~~---------------------------------------------~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~~ 109 (161)
T 1bxd_A 75 PN---------------------------------------------RAWFQVEDDGPGIAPEQRKHLFQPFVRGDSART 109 (161)
T ss_dssp TT---------------------------------------------EEEEEEEEESSCSCTTGGGCSSCCCCCCSCCCC
T ss_pred CC---------------------------------------------EEEEEEEeCCCCCCHHHHHHhCCCceeCCCCCC
Confidence 21 578999999999999999999999999876542
Q ss_pred CCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 622 ~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
.+|+||||+|||++++.|||+|++.+.++ .|++|++.+|+..
T Consensus 110 --~~g~GlGL~i~~~~~~~~gG~i~~~~~~~--~G~~~~i~lP~~~ 151 (161)
T 1bxd_A 110 --ISGTGLGLAIVQRIVDNHNGMLELGTSER--GGLSIRAWLPVPV 151 (161)
T ss_dssp --CCCCSCCCCTTHHHHHHHTSEEEEEEETT--TEEEEEEEECCCS
T ss_pred --CCCcccCHHHHHHHHHHcCCEEEEEECCC--CeEEEEEEEeCCc
Confidence 36999999999999999999999987653 5999999999854
No 19
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.88 E-value=3.6e-22 Score=206.19 Aligned_cols=151 Identities=26% Similarity=0.449 Sum_probs=122.3
Q ss_pred EecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC-CeEEEEEEEecccc
Q 001330 467 EFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE-GHISVRAAVKKKSF 545 (1099)
Q Consensus 467 ~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~ 545 (1099)
+++|.++++++++.+... ..+++.+.++.++. ...+.+|+..|.|||.|||+||+||++. |.|.|.+.....
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~----~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~-- 74 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDR----DLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEE-- 74 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSS----CCEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEETT--
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCC----CcEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEccC--
Confidence 589999999999999988 88899988876542 3468999999999999999999999965 566666543221
Q ss_pred chhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCC
Q 001330 546 KQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625 (1099)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~ 625 (1099)
...+.|+|.|+|+||+++.++++|++|++.+..+....+
T Consensus 75 -----------------------------------------~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~ 113 (177)
T 3sl2_A 75 -----------------------------------------EELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLG 113 (177)
T ss_dssp -----------------------------------------TTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------CC
T ss_pred -----------------------------------------CCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCC
Confidence 115789999999999999999999999998876656667
Q ss_pred CccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 626 GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
|+||||+|||++++.|||+|.+.+..+ .|++|++.+|+..
T Consensus 114 g~GlGL~iv~~~~~~~~G~i~i~~~~~--~Gt~~~i~lP~~~ 153 (177)
T 3sl2_A 114 GTGLGLAIAKEMVQAHGGDIWADSIEG--KGTTITFTLPYKE 153 (177)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEEEETT--TEEEEEEEEEEEC
T ss_pred CCCcCHHHHHHHHHHcCCEEEEEecCC--CCeEEEEEEeCCC
Confidence 999999999999999999999987753 5899999999865
No 20
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.87 E-value=7e-22 Score=199.37 Aligned_cols=156 Identities=22% Similarity=0.335 Sum_probs=105.9
Q ss_pred cceEEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccC--CCeEEEEEE
Q 001330 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTS--EGHISVRAA 539 (1099)
Q Consensus 462 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~--~G~I~v~~~ 539 (1099)
.++.+++++.+++++++..+... ..+++++.++.+... ..+.+|+.+|.||+.||++||+||+. .|.|.|++.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~----~~i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~ 76 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSL----PELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTR 76 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTC----CCEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCC----CeeeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEe
Confidence 45678999999999999999887 788899988765432 24789999999999999999999997 567777765
Q ss_pred EeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhcccccccccc
Q 001330 540 VKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET 619 (1099)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s 619 (1099)
...... .....+...+.|+|.|+|+||+++.++++|++|++.+.
T Consensus 77 ~~~~~~-----------------------------------~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~- 120 (160)
T 1r62_A 77 TAFQLT-----------------------------------LHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE- 120 (160)
T ss_dssp EEEEEE-----------------------------------ETTEEEEEEEEEEEEEECTTC------------------
T ss_pred cccccc-----------------------------------ccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-
Confidence 432200 00011122588999999999999999999999997542
Q ss_pred CCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 620 ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 620 ~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
+|+||||+|||++++.|||+|++.+.. + |++|++.+|+.
T Consensus 121 -----~g~GlGL~i~~~~~~~~gG~l~i~s~~-~--~~~~~i~lP~~ 159 (160)
T 1r62_A 121 -----GGTGLGLSIARNLIDQHSGKIEFTSWP-G--HTEFSVYLPIR 159 (160)
T ss_dssp --------CHHHHHHHHHHHHTTCEEEEEEET-T--EEEEEEEEEEE
T ss_pred -----CCCccCHHHHHHHHHHCCCeEEEEeCC-C--CEEEEEEEecc
Confidence 589999999999999999999998764 3 39999998863
No 21
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.84 E-value=5.4e-21 Score=199.52 Aligned_cols=149 Identities=21% Similarity=0.300 Sum_probs=117.8
Q ss_pred EEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhcc-------------CCC
Q 001330 466 EEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT-------------SEG 532 (1099)
Q Consensus 466 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT-------------~~G 532 (1099)
+++++.++++++...+...+..+++.+.++...... .....+..++.|+|.|||+||+||+ ..|
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~ 79 (189)
T 1i58_A 3 HMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDT---ELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIG 79 (189)
T ss_dssp SEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTC---EEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSE
T ss_pred eEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcc---cccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC
Confidence 578999999999999999999888877766533221 1223345567777999999999996 345
Q ss_pred eEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccH------
Q 001330 533 HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQ------ 606 (1099)
Q Consensus 533 ~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l------ 606 (1099)
.|.|.+...+. .+.|+|.|+|+||+++.+
T Consensus 80 ~I~I~~~~~~~---------------------------------------------~~~i~V~D~G~Gi~~~~~~~~~~~ 114 (189)
T 1i58_A 80 TLILSARHEGN---------------------------------------------NVVIEVEDDGRGIDKEKIIRKAIE 114 (189)
T ss_dssp EEEEEEEEETT---------------------------------------------EEEEEEEECSSCCCHHHHHHHHHH
T ss_pred eEEEEEEecCC---------------------------------------------EEEEEEEeCCCCcCHHHHhhhhhh
Confidence 67776543221 588999999999999986
Q ss_pred ------------------hhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 607 ------------------NSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 607 ------------------~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
+++|+|||+.+.... ..+|+||||+||+++++.|||+|++.+.+ +.|++|++.+|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~~~-~~~g~GlGL~iv~~~~~~~~G~i~i~s~~--~~Gt~~~i~lPl 188 (189)
T 1i58_A 115 KGLIDESKAATLSDQEILNFLFVPGFSTKEKVS-EVSGRGVGMDVVKNVVESLNGSISIESEK--DKGTKVTIRLPL 188 (189)
T ss_dssp TTSSCHHHHTTCCHHHHHGGGGSTTCSHHHHHH-GGGTCCCHHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEEC
T ss_pred ccchhhhhhcccchhhhHHHhcCCcccccccCC-CCCCCccCHHHHHHHHHHcCCEEEEEeCC--CCceEEEEEEeC
Confidence 999999998765422 23599999999999999999999998775 359999999986
No 22
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.83 E-value=3.2e-20 Score=196.84 Aligned_cols=134 Identities=43% Similarity=0.713 Sum_probs=109.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCC-eEEEECCHHHHHHHHHHHhhhh--hhcCCCCCccEEEEecCCCCCCHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGA-KFEVCRNGKEAFDHVCKILSDL--RKEGKALPYDYIMMDCEMPVMNGWEATRL 1038 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~-~v~~a~~g~eAl~~l~~~~~~~--~~~~~~~~~DlIlmDi~MP~mdG~e~~r~ 1038 (1099)
+.+|||||||+.++..+..+|++.|+ .|..+.++.+|++.+.+..... ........||+||+|+.||+|||++++++
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~ 140 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATRE 140 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHH
Confidence 46899999999999999999999998 8999999999999986421000 00011237999999999999999999999
Q ss_pred HhccccccCCCccEEEEeccC-CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1039 IRKEEEQYDVHIPIIALTAHA-MAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1039 IR~~~~~~~~~ipIIalTa~~-~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
||+.+....+.+|||++|+.. +.+...+++++|+++||.||++ +|..+|+++++...
T Consensus 141 lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 141 IRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRH 198 (206)
T ss_dssp HHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC----
T ss_pred HHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence 998643324579999999998 8888999999999999999999 99999998876543
No 23
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.82 E-value=6.8e-19 Score=193.61 Aligned_cols=123 Identities=21% Similarity=0.327 Sum_probs=112.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+...|+..|+.|..+.||.+|++.+.+ ..+||+||+|++||+|||++++++||+.
T Consensus 125 ~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~----------~~~~dlvllD~~mP~~dG~~l~~~lr~~ 194 (259)
T 3luf_A 125 IEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQ----------HPAIRLVLVDYYMPEIDGISLVRMLRER 194 (259)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH----------CTTEEEEEECSCCSSSCHHHHHHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc----------CCCCCEEEEcCCCCCCCHHHHHHHHHhc
Confidence 589999999999999999999999999999999999998853 1248999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
.+ ...+|||++|+..+.+...+|+++|+++||.||++.++|..+|+++++..+
T Consensus 195 ~~--~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 247 (259)
T 3luf_A 195 YS--KQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALE 247 (259)
T ss_dssp CC--TTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred cC--CCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHh
Confidence 43 246899999999999999999999999999999999999999999988765
No 24
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.81 E-value=3.4e-19 Score=171.96 Aligned_cols=119 Identities=29% Similarity=0.439 Sum_probs=109.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
++||||||++..+..++..|++.||+|..+.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~-----------~~~~dlvllD~~~p~~~g~~~~~~l~~~ 71 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-----------EFTPDLIVLXIMMPVMDGFTVLKKLQEK 71 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT-----------TBCCSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH-----------hcCCCEEEEeccCCCCcHHHHHHHHHhc
Confidence 48999999999999999999999999999999999999883 3579999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
.. .+++|||++|+..+.+...+++++|+++|+.||++.++|..+|+++++
T Consensus 72 ~~--~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 72 EE--WKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp TT--TTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cc--ccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 32 246899999999999999999999999999999999999999998764
No 25
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.81 E-value=1.5e-21 Score=189.71 Aligned_cols=114 Identities=22% Similarity=0.313 Sum_probs=100.7
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
+..|||||||++.++..++.+|++.||+|. +|.||++|++.+.+ .+||+||+|++||+|||++++++|
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~-----------~~~DlvllDi~mP~~~G~el~~~l 75 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK-----------GQFDIAIIDVNLDGEPSYPVADIL 75 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH-----------CCSSEEEECSSSSSCCSHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------CCCCEEEEecCCCCCCHHHHHHHH
Confidence 346899999999999999999999999985 79999999999853 479999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
|+. ++|||++||+.+.+. +.++|+++||.|||++++|.++|+++.+
T Consensus 76 r~~------~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 76 AER------NVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp HHT------CCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred HcC------CCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 962 589999999876543 3468999999999999999999987643
No 26
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.79 E-value=2.3e-18 Score=169.39 Aligned_cols=122 Identities=25% Similarity=0.372 Sum_probs=111.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+.+ ..||+||+|+.||++||++++++||+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------~~~dlvl~D~~lp~~~g~~~~~~lr~ 72 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYK-----------NLPDALICDVLLPGIDGYTLCKRVRQ 72 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------SCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-----------CCCCEEEEeCCCCCCCHHHHHHHHHc
Confidence 3689999999999999999999999999999999999998853 47999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
... .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++..
T Consensus 73 ~~~--~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 73 HPL--TKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp SGG--GTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred CCC--cCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 532 24689999999999999999999999999999999999999999987643
No 27
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.78 E-value=1.6e-17 Score=182.15 Aligned_cols=122 Identities=29% Similarity=0.499 Sum_probs=112.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+.+||||||++.++..+..+|++.||+|..+.||.+|++.+.+ ..||+||+|++||+|||++++++||
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-----------~~~dlvl~D~~mp~~~G~~l~~~ir 196 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK-----------NHIDIVLSDVNMPNMDGYRLTQRIR 196 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHH-----------SCCSEEEEEESSCSSCCHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-----------CCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 45789999999999999999999999999999999999999853 3699999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
+.. +++|||++|++.+.+...+|+++|+++||.||++.++|..+|+++++...
T Consensus 197 ~~~----~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 249 (254)
T 2ayx_A 197 QLG----LTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR 249 (254)
T ss_dssp HHH----CCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred hcC----CCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHhh
Confidence 753 36899999999999999999999999999999999999999999887654
No 28
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.78 E-value=2.9e-18 Score=164.74 Aligned_cols=116 Identities=33% Similarity=0.413 Sum_probs=107.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
++||||||++..+..+...|++.||++..+.++.+|++.+.+ .+||+||+|+.||+++|++++++||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------~~~dlii~D~~~p~~~g~~~~~~lr~~ 71 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE-----------LQPDLILLDIMLPNKDGVEVCREVRKK 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-----------TCCSEEEEETTSTTTHHHHHHHHHHTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhh-----------CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 589999999999999999999999999999999999998842 479999999999999999999999963
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
..+|||++|+..+.....+++++|+++||.||++.++|..+++++++
T Consensus 72 -----~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 72 -----YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp -----CCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred -----CCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 25899999999999999999999999999999999999999998765
No 29
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.77 E-value=2.8e-18 Score=168.07 Aligned_cols=125 Identities=34% Similarity=0.534 Sum_probs=108.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCC-eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGA-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~-~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
.+||||||++..+..++.+|+..|+ .+..+.+|.+|++.+.+... ....||+||+|+.||+|||++++++||+
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~------~~~~~dlvllD~~mp~~~G~~~~~~lr~ 76 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTS------KGENYNMIFMDVQMPKVDGLLSTKMIRR 76 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHH------HTCCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHh------cCCCCCEEEEeCCCCCCChHHHHHHHHh
Confidence 4799999999999999999999897 48899999999998854110 0136999999999999999999999996
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
.. ...+|||++|+..+.+...+++++|+++||.||++.++|..+|++++...
T Consensus 77 ~~---~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 128 (133)
T 2r25_B 77 DL---GYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY 128 (133)
T ss_dssp HS---CCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred hc---CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Confidence 32 23579999999999999999999999999999999999999999886543
No 30
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.77 E-value=4.5e-18 Score=168.91 Aligned_cols=124 Identities=24% Similarity=0.364 Sum_probs=107.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+.+||||||++..+..++.+|++.|+.+..+.++++|++.+.+ ..||+||+|+.||++||++++++||
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------~~~dlvl~D~~mp~~~g~~~~~~lr 81 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE-----------EDYDAVIVDLHMPGMNGLDMLKQLR 81 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH-----------SCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-----------CCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 45799999999999999999999999999999999999998853 4799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+........+|||++|+..+.+...+++++|+++||.||++.++|.++|.++...
T Consensus 82 ~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 82 VMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp HHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred hchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 6533323468999999999999999999999999999999999999999987543
No 31
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.77 E-value=6.9e-18 Score=164.11 Aligned_cols=121 Identities=24% Similarity=0.390 Sum_probs=108.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCe-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
+.+||||||++..+..++.+|++.|+. +..+.++.+|++.+.. ..+||+||+|++||+|||++++++||
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~----------~~~~dlvi~D~~~p~~~g~~~~~~lr 74 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDA----------NADTKVLITDWNMPEMNGLDLVKKVR 74 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH----------CTTCCEEEECSCCSSSCHHHHHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh----------CCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 468999999999999999999999995 8899999999988743 23699999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
+... .+++|||++|++.+.+...+++++|+++||.||++.++|.++|+++++
T Consensus 75 ~~~~--~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 75 SDSR--FKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp TSTT--CTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred hcCC--CCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 7432 246899999999999999999999999999999999999999998865
No 32
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.76 E-value=5.3e-19 Score=197.34 Aligned_cols=118 Identities=19% Similarity=0.272 Sum_probs=107.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC-CCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP-VMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP-~mdG~e~~r~I 1039 (1099)
+.+||+||||+.++..++.+|+..||.|. .|.||.+|++.+.+ .+||+||||++|| +|||++++++|
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~-----------~~~dlvl~D~~MPd~mdG~e~~~~i 228 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR-----------RTPGLVLADIQLADGSSGIDAVKDI 228 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-----------CCCSEEEEESCCTTSCCTTTTTHHH
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh-----------CCCCEEEEcCCCCCCCCHHHHHHHH
Confidence 35899999999999999999999999999 99999999999854 4799999999999 89999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
|+.. ++|||++|++. ++..+|+++|+++||+||++.++|..+|+++++...
T Consensus 229 r~~~-----~~piI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 229 LGRM-----DVPVIFITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp HHHT-----TCCEEEEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSC
T ss_pred HhcC-----CCCEEEEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 9753 69999999985 457789999999999999999999999999987643
No 33
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.76 E-value=6.4e-18 Score=165.09 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=97.4
Q ss_pred ecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccccch
Q 001330 468 FNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQ 547 (1099)
Q Consensus 468 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~ 547 (1099)
+++.+.++.+.. .+..+++++.++.+.... .....++..+.|++.||++||+||++.+.|.|++.....
T Consensus 2 v~l~~~l~~~~~----~~~~~~i~~~~~~~~~~~---~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~---- 70 (128)
T 3ehg_A 2 IRLKDELINIKQ----ILEAADIMFIYEEEKWPE---NISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWK---- 70 (128)
T ss_dssp CCHHHHHHHHHH----HHHHTTCEEECCCCSCCS---CCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEETT----
T ss_pred ccHHHHHHHHHH----HHHHcCCEEEEEcCcccc---ccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEeCC----
Confidence 355555555544 455788988887643221 223568899999999999999999988888887653321
Q ss_pred hhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCc
Q 001330 548 DIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGL 627 (1099)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~Gt 627 (1099)
.+.|+|.|+|+||+++.+ .|+
T Consensus 71 -----------------------------------------~~~i~V~D~G~Gi~~~~~------------------~g~ 91 (128)
T 3ehg_A 71 -----------------------------------------EVVITVSDDGTFKGEENS------------------FSK 91 (128)
T ss_dssp -----------------------------------------EEEEEEEESSCCCSCSSC------------------CCT
T ss_pred -----------------------------------------EEEEEEEECCcCcCcccC------------------CCC
Confidence 578999999999999875 489
Q ss_pred cccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 628 GLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 628 GLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
||||+|||++++.|||+|++.+.+ |++|++.+|+.
T Consensus 92 GlGL~~~~~~~~~~gG~i~~~s~~----Gt~~~i~lP~~ 126 (128)
T 3ehg_A 92 GHGLLGMRERLEFANGSLHIDTEN----GTKLTMAIPNN 126 (128)
T ss_dssp TSHHHHHHHHHHHTTCEEEEECSS----SEEEEEEEEC-
T ss_pred CccHHHHHHHHHHcCCEEEEEeCC----CEEEEEEEecC
Confidence 999999999999999999997653 89999999874
No 34
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.76 E-value=2.7e-18 Score=178.34 Aligned_cols=122 Identities=20% Similarity=0.295 Sum_probs=110.4
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 960 ~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
+...+||||||++..+..+..+|+..||.|..|.+|.+|++.+. ..+||+||+|+.||+|||++++++|
T Consensus 5 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~dlvl~D~~lp~~~g~~~~~~l 73 (184)
T 3rqi_A 5 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAG-----------AEKFEFITVXLHLGNDSGLSLIAPL 73 (184)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHT-----------TSCCSEEEECSEETTEESHHHHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-----------hCCCCEEEEeccCCCccHHHHHHHH
Confidence 34579999999999999999999999999999999999999883 3579999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
|+. .+++|||++|+..+.+...+++++|+++||.||++.++|..+|+++++..
T Consensus 74 ~~~----~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~ 126 (184)
T 3rqi_A 74 CDL----QPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEV 126 (184)
T ss_dssp HHH----CTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHH
T ss_pred Hhc----CCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHh
Confidence 974 24689999999999999999999999999999999999999998766543
No 35
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.74 E-value=3.1e-17 Score=158.49 Aligned_cols=120 Identities=20% Similarity=0.308 Sum_probs=109.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
..+||||||++..+..++..|+..|+.+..+.++.+|++.+. ...||+||+|+.||+++|+++++++|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvi~D~~l~~~~g~~~~~~l~~ 71 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAP-----------DVRNGVLVTDLRMPDMSGVELLRNLGD 71 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGG-----------GCCSEEEEEECCSTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-----------cCCCCEEEEECCCCCCCHHHHHHHHHh
Confidence 358999999999999999999999999999999999998773 246999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
. .+.+|||++|+..+.+...+++++|+++|+.||++.++|..+|+++++..
T Consensus 72 ~----~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (126)
T 1dbw_A 72 L----KINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122 (126)
T ss_dssp T----TCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTC
T ss_pred c----CCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhh
Confidence 4 24689999999999999999999999999999999999999999887543
No 36
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.74 E-value=4.3e-17 Score=163.79 Aligned_cols=123 Identities=27% Similarity=0.370 Sum_probs=112.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+. ..+||+||+|+.||+++|+++++.||+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-----------~~~~dlii~D~~l~~~~g~~~~~~lr~ 75 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS-----------LTRPDLIISDVLMPEMDGYALCRWLKG 75 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHT-----------TCCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-----------hCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 468999999999999999999999999999999999999883 357999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
... .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++...
T Consensus 76 ~~~--~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 76 QPD--LRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp STT--TTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred CCC--cCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 532 246899999999999999999999999999999999999999999987653
No 37
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.73 E-value=6.2e-17 Score=157.97 Aligned_cols=119 Identities=23% Similarity=0.314 Sum_probs=109.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..++.+|+..|+.+..+.++.+|++.+.+ ..||+||+|+.||+++|+++++++|+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------~~~dlvl~D~~l~~~~g~~~~~~l~~~ 72 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN-----------EFFNLALFXIKLPDMEGTELLEKAHKL 72 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------SCCSEEEECSBCSSSBHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc-----------CCCCEEEEecCCCCCchHHHHHHHHhh
Confidence 589999999999999999999999999999999999998853 369999999999999999999999964
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
. +++|||++|+....+...+++++|+++||.||++.++|..+|+++++..
T Consensus 73 ~----~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 122 (132)
T 3crn_A 73 R----PGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp C----TTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred C----CCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcc
Confidence 2 4689999999999999999999999999999999999999999887643
No 38
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.73 E-value=9.6e-17 Score=153.32 Aligned_cols=118 Identities=24% Similarity=0.334 Sum_probs=108.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
+||||||++..+..+...|+..|+.+..+.++.+|++.+.+ ..||+|++|+.||+++|+++++++|+..
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~-----------~~~dlil~D~~l~~~~g~~~~~~l~~~~ 70 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE-----------HIPDIAIVDLGLPDEDGLSLIRRWRSND 70 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------SCCSEEEECSCCSSSCHHHHHHHHHHTT
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhc-----------cCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999998853 3699999999999999999999999642
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
+.+|||++|+..+.+...+++++|+++|+.||++.++|..+++++++..
T Consensus 71 ----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 71 ----VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp ----CCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ----CCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999987754
No 39
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.73 E-value=1e-16 Score=154.85 Aligned_cols=121 Identities=27% Similarity=0.420 Sum_probs=108.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCC-eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGA-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~-~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
.+||||||++..+..++.+|+..|+ .+..+.++.+|++.+. ...||+||+|+.||+++|++++++||+
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~-----------~~~~dlvi~D~~l~~~~g~~l~~~l~~ 73 (128)
T 1jbe_A 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-----------AGGYGFVISDWNMPNMDGLELLKTIRA 73 (128)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHT-----------TCCCCEEEEESCCSSSCHHHHHHHHHC
T ss_pred cEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 5799999999999999999999999 7999999999998873 347999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
... .+++|||++|+....+...+++++|+++|+.||++.++|..+|+++++..
T Consensus 74 ~~~--~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 74 XXA--MSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp --C--CTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred hcc--cCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 432 34689999999999999999999999999999999999999999987654
No 40
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.72 E-value=5.3e-17 Score=156.18 Aligned_cols=117 Identities=27% Similarity=0.372 Sum_probs=107.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..++..|+..|+.+..+.++.+|++.+.+ ..||+||+|+.||+++|+++++++|+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------~~~dlvl~D~~l~~~~g~~~~~~l~~~ 72 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK-----------ERPDLVLLDMKIPGMDGIEILKRMKVI 72 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------HCCSEEEEESCCTTCCHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-----------cCCCEEEEecCCCCCCHHHHHHHHHHh
Confidence 589999999999999999999999999999999999998854 269999999999999999999999974
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
.+++|||++|+..+.+...+++++|+++|+.||++.++|..+++++++
T Consensus 73 ----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 73 ----DENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp ----CTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred ----CCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 246899999999999999999999999999999999999999988754
No 41
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.72 E-value=5.6e-17 Score=157.38 Aligned_cols=121 Identities=25% Similarity=0.402 Sum_probs=103.8
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 960 ~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
+.+++||||||++..+..+..+|++.|+.+..+.++.+|++.+. ..+||+||+|+.||+++|++++++|
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlvi~d~~l~~~~g~~~~~~l 73 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-----------GFTPDLMICDIAMPRMNGLKLLEHI 73 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHT-----------TCCCSEEEECCC-----CHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHh-----------cCCCCEEEEecCCCCCCHHHHHHHH
Confidence 34679999999999999999999999999999999999999883 3579999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL-QKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi-~~~~L~~~l~~i~~~ 1095 (1099)
|+. .+.+|||++|+..+.+...+++++|+++||.||+ +.++|..+++++++.
T Consensus 74 ~~~----~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 74 RNR----GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp HHT----TCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred Hhc----CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 974 3468999999999999999999999999999999 999999999988754
No 42
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.72 E-value=7.7e-17 Score=154.67 Aligned_cols=119 Identities=30% Similarity=0.517 Sum_probs=102.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
++||||||++..+..++.+|+..|+.+..+.++.+|++.+.+ ..||+||+|+.||+++|++++++||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~-----------~~~dlvi~D~~l~~~~g~~~~~~l~~~ 70 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE-----------NKPDLILMDIQLPEISGLEVTKWLKED 70 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-----------HCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc-----------CCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 479999999999999999999999999999999999998854 269999999999999999999999974
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
.. .+++|||++|+....+...+++++|+++||.||++.++|..+++++++
T Consensus 71 ~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 71 DD--LAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp TT--TTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred cc--ccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 21 246899999999988889999999999999999999999999998764
No 43
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.72 E-value=9.5e-17 Score=153.29 Aligned_cols=116 Identities=27% Similarity=0.428 Sum_probs=106.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCe-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
.+||||||++..+..++..|+..|+. +..+.++.+|++.+.+ ..||+||+|+.||+++|+++++++|+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~-----------~~~dlil~D~~l~~~~g~~~~~~l~~ 71 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE-----------LKPDIVTMDITMPEMNGIDAIKEIMK 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-----------HCCSEEEEECSCGGGCHHHHHHHHHH
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHh-----------cCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 58999999999999999999999999 5689999999998854 26999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~ 1093 (1099)
.. +.+|||++|+....+...+++++|+++|+.||++.++|..++++++
T Consensus 72 ~~----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 72 ID----PNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp HC----TTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred hC----CCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 53 4689999999999999999999999999999999999999998764
No 44
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.72 E-value=9.4e-17 Score=175.03 Aligned_cols=120 Identities=25% Similarity=0.356 Sum_probs=111.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
...+||||||++..+..+..+|+..||+|..+.++.+|++.+.+ .+||+||+|+.||++||++++++||
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------~~~dlvllD~~lp~~~g~~~~~~lr 90 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE-----------TRPDAVILDVXMPGMDGFGVLRRLR 90 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------HCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------CCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 34699999999999999999999999999999999999999854 3699999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++.
T Consensus 91 ~~~----~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 91 ADG----IDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 141 (250)
T ss_dssp HTT----CCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHH
T ss_pred hcC----CCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 752 468999999999999999999999999999999999999999998764
No 45
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.72 E-value=1.6e-16 Score=152.17 Aligned_cols=119 Identities=23% Similarity=0.286 Sum_probs=109.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+...|+..|+.+..+.++.+|++.+.+ ..||+||+|+.||+++|+++++.+|+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------~~~dlvi~d~~l~~~~g~~~~~~l~~~ 71 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN-----------QSVDLILLDINLPDENGLMLTRALRER 71 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------SCCSEEEEESCCSSSCHHHHHHHHHTT
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhc-----------CCCCEEEEeCCCCCCChHHHHHHHHhc
Confidence 479999999999999999999999999999999999988753 369999999999999999999999962
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
+.+|||++|+..+.+...+++++|+++|+.||++.++|..+|+++++..+
T Consensus 72 -----~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 121 (122)
T 1zgz_A 72 -----STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 (122)
T ss_dssp -----CCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHT
T ss_pred -----CCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHhc
Confidence 35899999999999999999999999999999999999999999887653
No 46
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.71 E-value=1.5e-16 Score=152.61 Aligned_cols=118 Identities=19% Similarity=0.282 Sum_probs=108.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..++..|+..|+.+..+.++.+|++.+.+ ..||+||+|+.||+++|+++++++|+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------~~~dlvi~D~~l~~~~g~~~~~~l~~~ 72 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-----------YDINLVIMDINLPGKNGLLLARELREQ 72 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------SCCSEEEECSSCSSSCHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc-----------CCCCEEEEcCCCCCCCHHHHHHHHHhC
Confidence 489999999999999999999999999999999999998853 369999999999999999999999974
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
+.+|||++|+........+++++|+++|+.||++.++|..+++++++..
T Consensus 73 -----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 73 -----ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp -----CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred -----CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 2589999999999999999999999999999999999999999987653
No 47
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.71 E-value=1.5e-16 Score=159.32 Aligned_cols=122 Identities=19% Similarity=0.290 Sum_probs=112.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
...+||||||++..+..+..+|+..||.|..+.++.+|++.+.+ .+||+||+|+.||+++|++++++||
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------~~~dlvi~D~~l~~~~g~~~~~~l~ 81 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLAS-----------REVDLVISAAHLPQMDGPTLLARIH 81 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHH-----------SCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHc-----------CCCCEEEEeCCCCcCcHHHHHHHHH
Confidence 34689999999999999999999999999999999999999853 3799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAG-MDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
+. .+.+|||++|+..+.+...+++++| +++||.||++.++|..+|+++++...
T Consensus 82 ~~----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~ 135 (153)
T 3hv2_A 82 QQ----YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH 135 (153)
T ss_dssp HH----CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred hH----CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhH
Confidence 74 2468999999999999999999999 99999999999999999999887654
No 48
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.71 E-value=1.7e-16 Score=158.41 Aligned_cols=129 Identities=20% Similarity=0.260 Sum_probs=109.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCC--eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGA--KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~--~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
..+||||||++..+..++.+|+..|+ .+..+.++.+|++.+.+.. .......||+||+|+.||++||++++++|
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~----~~~~~~~~dlillD~~lp~~~g~~l~~~l 83 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQG----EYENSPRPNLILLDLNLPKKDGREVLAEI 83 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCG----GGTTCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhcc----ccccCCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 35899999999999999999998887 7889999999999874200 00001469999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
|+... .+++|||++|+..+.+...+++++|+++||.||++.++|..+|+++.+..
T Consensus 84 ~~~~~--~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 84 KQNPD--LKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp HHCTT--TTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HhCcC--cCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 97421 24689999999999999999999999999999999999999999987643
No 49
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.71 E-value=5.2e-17 Score=158.12 Aligned_cols=127 Identities=20% Similarity=0.299 Sum_probs=98.5
Q ss_pred EEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccc
Q 001330 465 EEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544 (1099)
Q Consensus 465 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~ 544 (1099)
.+.++|.+++++++..+ ..+++.+.++..... ......|+..|.||+.||++||+||++.|.|.|.+...
T Consensus 2 ~~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~~--- 71 (129)
T 3zxo_A 2 AMVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPL---SVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKVD--- 71 (129)
T ss_dssp ---CCHHHHHHHHHHHH----SCTTSEEEEEEESCG---GGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEES---
T ss_pred CccccHHHHHHHHHHHH----hhcCceEEEEecCCc---ccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEc---
Confidence 35689999999999877 456666666543322 11334568999999999999999999888888776421
Q ss_pred cchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCC
Q 001330 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624 (1099)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~ 624 (1099)
.. +.++|.|+|+||+++.
T Consensus 72 ------------------------------------------~~-~~i~v~D~G~gi~~~~------------------- 89 (129)
T 3zxo_A 72 ------------------------------------------DD-LCIEVTDNGRGMPDEF------------------- 89 (129)
T ss_dssp ------------------------------------------SE-EEEEEEECCCCCTTTT-------------------
T ss_pred ------------------------------------------CC-EEEEEecCCCCCCccc-------------------
Confidence 12 6799999999999865
Q ss_pred CCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 625 ~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
+||||+|||++++.|||++.+.+..+ +.|++|++.+|++
T Consensus 90 --~GlGL~i~~~~~~~~gG~i~~~~~~~-~~G~~~~i~lP~~ 128 (129)
T 3zxo_A 90 --TGSGLTNLRQRAEQAGGEFTLASMPG-ASGTVLRWSAPLS 128 (129)
T ss_dssp --CSHHHHHHHHHHHHTTCEEEEEECTT-TCCEEEEEEEESC
T ss_pred --CCcCHHHHHHHHHHcCCEEEEeeCCC-CCcEEEEEEecCC
Confidence 59999999999999999999987653 1589999999874
No 50
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.71 E-value=1.8e-16 Score=150.98 Aligned_cols=117 Identities=27% Similarity=0.382 Sum_probs=107.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+...|+..|+.+..+.++.+|++.+.+ ..||+||+|+.||+++|+++++++|+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------~~~dlvl~D~~l~~~~g~~~~~~l~~~ 70 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-----------EQPDIIILDLMLPEIDGLEVAKTIRKT 70 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------HCCSEEEECSSCSSSCHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHh-----------CCCCEEEEeccCCCCCHHHHHHHHHhC
Confidence 379999999999999999999999999999999999998854 269999999999999999999999963
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+.+|||++|+........+++++|+++|+.||++.++|..+++++++.
T Consensus 71 -----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 71 -----SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp -----CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred -----CCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 358999999999999999999999999999999999999999988653
No 51
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.71 E-value=1.5e-16 Score=157.30 Aligned_cols=123 Identities=27% Similarity=0.393 Sum_probs=112.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCe--EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAK--FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~--v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
..+||||||++..+..+..+|+..|+. +..+.++.+|++.+. ..+||+||+|+.||+++|++++++|
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-----------~~~~dlii~D~~l~~~~g~~~~~~l 73 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQ-----------QAKYDLIILDIGLPIANGFEVMSAV 73 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHT-----------TCCCSEEEECTTCGGGCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhh-----------cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 468999999999999999999999987 889999999999883 3579999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHHhh
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL-QKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi-~~~~L~~~l~~i~~~~~ 1097 (1099)
|+... .+.+|||++|+..+.+...+++++|+++||.||+ +.++|..+|+++++...
T Consensus 74 r~~~~--~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~ 130 (144)
T 3kht_A 74 RKPGA--NQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWL 130 (144)
T ss_dssp HSSST--TTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred Hhccc--ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHH
Confidence 97422 3568999999999999999999999999999999 99999999999988654
No 52
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.71 E-value=5.5e-17 Score=159.19 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=110.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC--CCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV--MNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~--mdG~e~~r~IR 1040 (1099)
.+||||||++..+..++.+|++.||.|..+.++.+|++.+ ...+||+||+|+.||+ ++|++++++||
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~D~~l~~~~~~g~~~~~~l~ 75 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQ-----------ISDDAIGMIIEAHLEDKKDSGIELLETLV 75 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSC-----------CCTTEEEEEEETTGGGBTTHHHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH-----------hccCCCEEEEeCcCCCCCccHHHHHHHHH
Confidence 5899999999999999999999999999999999998876 2357999999999999 99999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
+.. +++|||++|+..+.+...+++++|+++||.||++.++|..+|+++.+..
T Consensus 76 ~~~----~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 76 KRG----FHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp HTT----CCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHH
T ss_pred hCC----CCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhcc
Confidence 753 4689999999999999999999999999999999999999999987754
No 53
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=1.7e-16 Score=156.15 Aligned_cols=119 Identities=21% Similarity=0.322 Sum_probs=109.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.+ ..||+||+|+.||+++|++++++||+.
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------~~~dlvllD~~l~~~~g~~l~~~l~~~ 73 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER-----------SKPQLIILDLKLPDMSGEDVLDWINQN 73 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHH-----------HCCSEEEECSBCSSSBHHHHHHHHHHT
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHh-----------cCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 389999999999999999999999999999999999998854 269999999999999999999999974
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
.+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++..
T Consensus 74 ----~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 123 (137)
T 3cfy_A 74 ----DIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp ----TCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ----CCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999999887654
No 54
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.71 E-value=1.8e-16 Score=155.23 Aligned_cols=123 Identities=23% Similarity=0.346 Sum_probs=106.1
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 960 ~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
+.+.+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ..+ |+||+|+.||+++|++++++|
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-----------~~~-dlvllD~~lp~~~g~~~~~~l 72 (136)
T 1dcf_A 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS-----------HEH-KVVFMDVCMPGVENYQIALRI 72 (136)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC-----------TTC-SEEEEECCSSTTTTTHHHHHH
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-----------ccC-CEEEEeCCCCCCcHHHHHHHH
Confidence 34579999999999999999999999999999999999998762 224 999999999999999999999
Q ss_pred hcccccc-CCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1040 RKEEEQY-DVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1040 R~~~~~~-~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
|+..... ...+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++
T Consensus 73 ~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 73 HEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp HHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred HHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 8532211 122358889999999999999999999999999999999999998764
No 55
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.70 E-value=3.2e-16 Score=154.64 Aligned_cols=122 Identities=22% Similarity=0.305 Sum_probs=111.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+..+|+..|+.+..+.++.+|++.+.+ ....||+||+|+.||+++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~---------~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 74 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTE---------NCNSIDVVITDMKMPKLSGMDILREIKKI 74 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH---------TTTTCCEEEEESCCSSSCHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHh---------CCCCCCEEEEeCCCCCCcHHHHHHHHHHh
Confidence 589999999999999999999999999999999999998852 13479999999999999999999999974
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
.+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++...
T Consensus 75 ----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 125 (143)
T 3jte_A 75 ----TPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKK 125 (143)
T ss_dssp ----CTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred ----CCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHH
Confidence 246899999999999999999999999999999999999999999887554
No 56
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.70 E-value=2e-16 Score=158.09 Aligned_cols=130 Identities=15% Similarity=0.285 Sum_probs=111.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCC--eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGA--KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~--~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+||||||++..+..+..+|++.|+ .|..+.++.+|++.+.+... ........||+||+|+.||+++|++++++||
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~--~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDK--SGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTS--SSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhcccc--ccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 5899999999999999999999998 89999999999998842100 0000134799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
+... .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++.+..
T Consensus 83 ~~~~--~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 83 ENPH--TRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp HSTT--TTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred hccc--ccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 7422 35689999999999999999999999999999999999999999986643
No 57
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.70 E-value=3.4e-16 Score=152.93 Aligned_cols=130 Identities=22% Similarity=0.296 Sum_probs=111.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCC--eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGA--KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~--~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
+++||||||++..+..+...|+..|+ .+..+.++.+|++.+.+. ...+....||+||+|+.||+++|++++++|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~----~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 77 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQE----GEYANASRPDLILLXLNLPKKDGREVLAEI 77 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTC----GGGGSCCCCSEEEECSSCSSSCHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcc----cccccCCCCcEEEEecCCCcccHHHHHHHH
Confidence 46899999999999999999999998 899999999999988420 000001579999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
|+... .+++|||++|+..+.+...+++++|+++|+.||++.++|..+|+++++...
T Consensus 78 ~~~~~--~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 78 KSDPT--LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp HHSTT--GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred HcCcc--cccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 97531 146899999999999999999999999999999999999999999887653
No 58
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.70 E-value=6.5e-17 Score=159.17 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=110.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh-cCCeEEEECCHHHHHHHHHHHhhhhhhcCCC-CCccEEEEecCCC-CCCHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGK-LGAKFEVCRNGKEAFDHVCKILSDLRKEGKA-LPYDYIMMDCEMP-VMNGWEATRL 1038 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~-~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~-~~~DlIlmDi~MP-~mdG~e~~r~ 1038 (1099)
..+||||||++..+..++.+|++ .|++|..+.++.+|++.+. . ..||+||+|+.|| +++|++++++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~-----------~~~~~dlvi~D~~l~~~~~g~~~~~~ 72 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFK-----------DLDSITLIIMDIAFPVEKEGLEVLSA 72 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTT-----------TCCCCSEEEECSCSSSHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHh-----------cCCCCcEEEEeCCCCCCCcHHHHHHH
Confidence 35899999999999999999999 8999999999999998873 3 5799999999999 9999999999
Q ss_pred HhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1039 IRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1039 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
||+... .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++..
T Consensus 73 l~~~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 73 IRNNSR--TANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp HHHSGG--GTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred HHhCcc--cCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 997322 35789999999999999999999999999999999999999999887543
No 59
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.70 E-value=1.8e-16 Score=155.81 Aligned_cols=119 Identities=24% Similarity=0.350 Sum_probs=109.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+..+|+..|+.+..+.++.+|++.+.+ ..||+||+|+.||+++|++++++||+.
T Consensus 5 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------~~~dlvllD~~l~~~~g~~l~~~l~~~ 73 (136)
T 2qzj_A 5 TKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS-----------NKYDLIFLEIILSDGDGWTLCKKIRNV 73 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------CCCSEEEEESEETTEEHHHHHHHHHTT
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------cCCCEEEEeCCCCCCCHHHHHHHHccC
Confidence 589999999999999999999999999999999999998853 369999999999999999999999964
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
. .+|||++|+....+...+++++|+++||.||++.++|..+|+++++...
T Consensus 74 ~-----~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 74 T-----TCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMN 123 (136)
T ss_dssp C-----CCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred C-----CCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhh
Confidence 2 5899999999999999999999999999999999999999999876543
No 60
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.70 E-value=8.3e-17 Score=155.77 Aligned_cols=120 Identities=21% Similarity=0.347 Sum_probs=108.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCC-eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGA-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~-~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
.+||||||++..+..+...|+..|+ .+..+.++.+|++.+. ..+||+||+|+.||+++|++++++||+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~-----------~~~~dlvl~D~~l~~~~g~~~~~~l~~ 75 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMA-----------QNPHHLVISDFNMPKMDGLGLLQAVRA 75 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHH-----------TSCCSEEEECSSSCSSCHHHHHHHHTT
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHH-----------cCCCCEEEEeCCCCCCCHHHHHHHHhc
Confidence 5799999999999999999999999 7889999999999884 246999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
... .+++|||++|+....+...+++++|+++|+.||++.++|..+|+++++.
T Consensus 76 ~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 76 NPA--TKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp CTT--STTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred Ccc--ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 422 2468999999999999999999999999999999999999999988764
No 61
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.70 E-value=9.7e-17 Score=157.76 Aligned_cols=122 Identities=20% Similarity=0.383 Sum_probs=110.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
..+||||||++..+..+..+|++.|+.+..+.++.+|++.+.+ .+||+||+|+.||+++|++++++||+
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~-----------~~~dlvi~d~~l~~~~g~~~~~~l~~ 74 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVAR-----------RPYAAMTVDLNLPDQDGVSLIRALRR 74 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH-----------SCCSEEEECSCCSSSCHHHHHHHHHT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHh-----------CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3689999999999999999999999999999999999999853 47999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHH-HHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVAS-KIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~-~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
... .+.+|||++|+..+.+... +++++|+++||.||++.++|..+|+++++..
T Consensus 75 ~~~--~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 75 DSR--TRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp SGG--GTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred Ccc--cCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhc
Confidence 432 3568999999988777777 8999999999999999999999999988764
No 62
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.70 E-value=5.7e-17 Score=156.62 Aligned_cols=120 Identities=22% Similarity=0.332 Sum_probs=106.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+..+|++.|+.|..+.++.+|++.+.+ ..||+||+|+.||+++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST-----------RGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHH-----------SCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHh-----------cCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 589999999999999999999999999999999999999853 369999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
.. .+.+|||++|+....+. .+++..|+++||.||++.++|.++++......
T Consensus 73 ~~--~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 73 PM--EKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp CC--SSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred hc--cCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 32 35689999999988887 88999999999999999999999999876543
No 63
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.70 E-value=2.7e-16 Score=153.66 Aligned_cols=118 Identities=21% Similarity=0.354 Sum_probs=106.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLG--AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G--~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+|||+||++..+..+..+|+..| +.+..+.++.+|++.+.+ ..||+||+|+.||+++|++++++||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~-----------~~~dlvilD~~lp~~~g~~~~~~l~ 72 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE-----------YNPNVVILDIEMPGMTGLEVLAEIR 72 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH-----------HCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhh-----------cCCCEEEEecCCCCCCHHHHHHHHH
Confidence 479999999999999999999887 567789999999998854 2689999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+. .+++|||++|+....+...+++++|+++||.||++.++|..+|+++++.
T Consensus 73 ~~----~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 73 KK----HLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNG 123 (133)
T ss_dssp HT----TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC-
T ss_pred HH----CCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 74 2468999999999999999999999999999999999999999987653
No 64
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.70 E-value=2.5e-16 Score=155.50 Aligned_cols=128 Identities=18% Similarity=0.308 Sum_probs=111.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCC--eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGA--KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~--~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
..+||||||++..+..+..+|+..|+ .+..+.++.+|++.+.+.. ....+||+||+|+.||+++|++++++|
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~------~~~~~~dlvi~D~~l~~~~g~~~~~~l 82 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELY------AAGRWPSIICIDINMPGINGWELIDLF 82 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHH------TSSCCCSEEEEESSCSSSCHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhh------ccCCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 35899999999999999999999999 8999999999999885411 012479999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAG-MDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
|+........+|||++|+..+.+...+++++| +++||.||++.++|..+|++....
T Consensus 83 ~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 83 KQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp HHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred HHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 97432123578999999999999999999999 999999999999999999987643
No 65
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.70 E-value=2.3e-16 Score=154.44 Aligned_cols=121 Identities=21% Similarity=0.282 Sum_probs=111.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
..+||||||++..+..+..+|+..|+.+..+.++.+|++.+.+ .+||+||+|+.||+++|++++++||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~-----------~~~dlvi~d~~l~~~~g~~~~~~l~~ 75 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL-----------HAPDVIITDIRMPKLGGLEMLDRIKA 75 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHH-----------HCCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhc-----------cCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3589999999999999999999999999999999999999864 37999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++...
T Consensus 76 ~~----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (137)
T 3hdg_A 76 GG----AKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKL 127 (137)
T ss_dssp TT----CCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred cC----CCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHh
Confidence 53 46899999999999999999999999999999999999999999987643
No 66
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.70 E-value=3.9e-16 Score=152.58 Aligned_cols=121 Identities=22% Similarity=0.229 Sum_probs=109.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
..+||||||++..+..++.+|++.|+++..+.++.+|+..+.+ ..+||+||+|+.||+++|++++++||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~----------~~~~dlvi~D~~l~~~~g~~~~~~l~~ 76 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHY----------QKRIGLMITDLRMQPESGLDLIRTIRA 76 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHH----------CTTEEEEEECSCCSSSCHHHHHHHHHT
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHh----------CCCCcEEEEeccCCCCCHHHHHHHHHh
Confidence 3689999999999999999999999999999999999998853 224999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.. .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++...
T Consensus 77 ~~---~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 77 SE---RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp ST---TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred cC---CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 52 2468999999999999999999999999999999999999999988654
No 67
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.69 E-value=9.5e-17 Score=158.30 Aligned_cols=122 Identities=28% Similarity=0.373 Sum_probs=109.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-CCHHHHHHHH
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-MNGWEATRLI 1039 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-mdG~e~~r~I 1039 (1099)
.+.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.+ ...||+||+|+.||+ ++|++++++|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------~~~~dlvi~D~~l~~~~~g~~~~~~l 73 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSG----------GWYPDLILMDIELGEGMDGVQTALAI 73 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT----------TCCCSEEEEESSCSSSCCHHHHHHHH
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhc----------CCCCCEEEEeccCCCCCCHHHHHHHH
Confidence 34689999999999999999999999999999999999998842 247999999999995 9999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
|+. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++..+
T Consensus 74 ~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 126 (140)
T 3h5i_A 74 QQI-----SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYE 126 (140)
T ss_dssp HHH-----CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred HhC-----CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 964 36899999999988888899999999999999999999999999988665
No 68
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.69 E-value=6.1e-17 Score=186.98 Aligned_cols=120 Identities=25% Similarity=0.345 Sum_probs=111.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
++||||||++..+..+..+|+..||.|..|.||.+|++.+.+ ..||+||+|+.||+|||++++++||+.
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-----------~~~DlvllDi~mP~~dG~ell~~lr~~ 69 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE-----------LFFPVIVLDVWMPDGDGVNFIDFIKEN 69 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------BCCSEEEEESEETTEETTTHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-----------CCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 379999999999999999999999999999999999999853 379999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
. +.+|||++|++.+.+...+++++|+++||.||++.++|..+|+++++...
T Consensus 70 ~----~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 70 S----PDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp C----TTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred C----CCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 3 46899999999999999999999999999999999999999999887543
No 69
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.69 E-value=1e-16 Score=158.99 Aligned_cols=122 Identities=17% Similarity=0.166 Sum_probs=110.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCHHHHHHHHHHHhhhhhhcCCC-CCccEEEEecCCCCCCHHHHHHH
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLG-AKFEVCRNGKEAFDHVCKILSDLRKEGKA-LPYDYIMMDCEMPVMNGWEATRL 1038 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G-~~v~~a~~g~eAl~~l~~~~~~~~~~~~~-~~~DlIlmDi~MP~mdG~e~~r~ 1038 (1099)
.+.+||||||++..+..+..+|+..| |.+..+.++.+|+..+.+ . ..||+||+|+.||+++|++++++
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~----------~~~~~dlvi~D~~l~~~~g~~~~~~ 88 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTD----------GLDAFDILMIDGAALDTAELAAIEK 88 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHH----------HHTTCSEEEEECTTCCHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHh----------cCCCCCEEEEeCCCCCccHHHHHHH
Confidence 45799999999999999999999999 999999999998876632 1 37999999999999999999999
Q ss_pred HhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1039 IRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1039 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++..
T Consensus 89 l~~~~----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 89 LSRLH----PGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp HHHHC----TTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred HHHhC----CCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 99753 4689999999999999999999999999999999999999999987753
No 70
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.69 E-value=2e-16 Score=159.39 Aligned_cols=120 Identities=20% Similarity=0.261 Sum_probs=109.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
..+||||||++..+..+..+|++.|+.+. .+.++.+|++.+.+. ...||+||+|+.||+++|++++++||
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~---------~~~~dliilD~~l~~~~g~~~~~~lr 106 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNH---------YPNIDIVTLXITMPKMDGITCLSNIM 106 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---------GGGCCEEEECSSCSSSCHHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc---------CCCCCEEEEeccCCCccHHHHHHHHH
Confidence 46899999999999999999999999998 999999999998642 11589999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++
T Consensus 107 ~~~----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 107 EFD----KNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp HHC----TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred hhC----CCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 753 46899999999999999999999999999999999999999988653
No 71
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.68 E-value=3.2e-16 Score=152.46 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=104.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
..+||||||++..+..++.+|+ .|+.+..+.++.+|++.+.+ .+||+||+|+.||+++|++++++||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~-----------~~~dlvi~d~~l~~~~g~~~~~~l~~ 71 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALA-----------HPPDVLISDVNMDGMDGYALCGHFRS 71 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHH-----------SCCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhc-----------CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3589999999999999999999 89999999999999998853 37999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
... .+.+|||++|+....+. .+++++|+++||.||++.++|..+|+++++...
T Consensus 72 ~~~--~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 72 EPT--LKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp STT--TTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CCc--cCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 532 24689999999988777 899999999999999999999999999987643
No 72
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.68 E-value=4.2e-16 Score=155.56 Aligned_cols=119 Identities=26% Similarity=0.362 Sum_probs=109.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLG--AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G--~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
..+||||||++..+..+..+|+..| +.+..+.++.+|++.+. ...||+||+|+.||+++|++++++|
T Consensus 20 m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-----------~~~~dlii~D~~l~~~~g~~~~~~l 88 (150)
T 4e7p_A 20 HMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLE-----------KESVDIAILDVEMPVKTGLEVLEWI 88 (150)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHT-----------TSCCSEEEECSSCSSSCHHHHHHHH
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhh-----------ccCCCEEEEeCCCCCCcHHHHHHHH
Confidence 3689999999999999999999887 78999999999999883 3579999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
|+. .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++.
T Consensus 89 ~~~----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 89 RSE----KLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp HHT----TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred HHh----CCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 974 3468999999999999999999999999999999999999999998764
No 73
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.68 E-value=5.1e-16 Score=148.05 Aligned_cols=118 Identities=22% Similarity=0.274 Sum_probs=107.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+...|+..|+.+..+.++.+|+..+.+ ..||+||+|+.||+++|+++++++|+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------~~~dlvi~D~~l~~~~g~~~~~~l~~~ 70 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-----------RKPDLIILDLGLPDGDGIEFIRDLRQW 70 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------HCCSEEEEESEETTEEHHHHHHHHHTT
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhc-----------CCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 379999999999999999999999999999999999988753 269999999999999999999999942
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
+.+|||++|+....+...+++++|+++|+.||++.++|..+++++++..
T Consensus 71 -----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 71 -----SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp -----CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred -----CCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 3589999999999999999999999999999999999999999987653
No 74
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.68 E-value=4e-16 Score=152.36 Aligned_cols=118 Identities=26% Similarity=0.371 Sum_probs=108.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
++||||||++..+..+...|+..|+.+..+.++.+|++.+.+ ..||+||+|+.||+++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------~~~dlvl~D~~l~~~~g~~~~~~l~~~ 72 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET-----------EKPDLIVLDVMLPKLDGIEVCKQLRQQ 72 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------HCCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhh-----------cCCCEEEEecCCCCCCHHHHHHHHHcC
Confidence 589999999999999999999999999999999999998854 269999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
. +.+|||++|+........+++++|+++||.||++.++|..+++++++.
T Consensus 73 ~----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 73 K----LMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp T----CCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred C----CCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 2 358999999998888889999999999999999999999999988764
No 75
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.68 E-value=6.2e-16 Score=152.93 Aligned_cols=130 Identities=21% Similarity=0.296 Sum_probs=112.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCC--eEEEECCHHHHHHHHHHHhhhhhhcC-CC--CCccEEEEecCCCCCCHHHH
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGA--KFEVCRNGKEAFDHVCKILSDLRKEG-KA--LPYDYIMMDCEMPVMNGWEA 1035 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~--~v~~a~~g~eAl~~l~~~~~~~~~~~-~~--~~~DlIlmDi~MP~mdG~e~ 1035 (1099)
.+.+||||||++..+..+..+|+..|+ .+..+.++.+|++.+.+. ...+ .. ..||+||+|+.||+++|+++
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~----~~~~~~~~~~~~dlvi~D~~l~~~~g~~~ 80 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQT----GSYCNPDIAPRPAVILLDLNLPGTDGREV 80 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTC----CSSSCGGGCCCCSEEEECSCCSSSCHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhc----ccccCcccCCCCcEEEEECCCCCCCHHHH
Confidence 346899999999999999999999998 899999999999988520 0000 01 47999999999999999999
Q ss_pred HHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1036 TRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1036 ~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
+++||+... .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++..
T Consensus 81 ~~~l~~~~~--~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 81 LQEIKQDEV--LKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp HHHHTTSTT--GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcc--cCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 999997531 14689999999999999999999999999999999999999999988765
No 76
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.68 E-value=3.1e-17 Score=160.63 Aligned_cols=118 Identities=17% Similarity=0.141 Sum_probs=108.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLG-AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G-~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
..+||||||++..+..++.+|++.| |+|..+.++.+|++.+. ..+||+||+|+.||+++|++++++||
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~-----------~~~~dlvi~D~~l~~~~g~~~~~~l~ 82 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPA-----------DTRPGIVILDLGGGDLLGKPGIVEAR 82 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCT-----------TCCCSEEEEEEETTGGGGSTTHHHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHh-----------ccCCCEEEEeCCCCCchHHHHHHHHH
Confidence 3589999999999999999999999 99999999999987762 35799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++
T Consensus 83 ~~~----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 83 ALW----ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp GGG----TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred hhC----CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 754 36899999999999999999999999999999999999999988754
No 77
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.68 E-value=3.7e-16 Score=151.67 Aligned_cols=119 Identities=18% Similarity=0.328 Sum_probs=106.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhc-CCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKL-GAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~-G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+||||||++..+..++..|+.. |+.+. .+.++.+|++.+.+ ..||+||+|+.||+++|++++++||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~dlvllD~~l~~~~g~~~~~~l~ 71 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE-----------KRPDILLLDIIMPHLDGLAVLERIR 71 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH-----------HCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhc-----------CCCCEEEEecCCCCCCHHHHHHHHH
Confidence 47999999999999999999987 78865 79999999998854 2689999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+.. .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++.
T Consensus 72 ~~~---~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 72 AGF---EHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp HHC---SSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred hcC---CCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 731 2357999999999999999999999999999999999999999998754
No 78
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.68 E-value=4.5e-16 Score=154.34 Aligned_cols=123 Identities=22% Similarity=0.331 Sum_probs=111.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
..+||||||++..+..+...|+..|+.|..+.++.+|++.+.+ ..||+||+|+.||+++|+++++.||+
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------~~~dlii~d~~l~~~~g~~~~~~l~~ 76 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVK-----------THPHLIITEANMPKISGMDLFNSLKK 76 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHH-----------HCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHc-----------CCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 4689999999999999999999999999999999999998864 26999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
.. ..+.+|||++|+....+...+++++|+++||.||++.++|..+|+++++...
T Consensus 77 ~~--~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 77 NP--QTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp ST--TTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred Cc--ccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 32 1356899999999999999999999999999999999999999999887654
No 79
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.67 E-value=5.4e-16 Score=152.50 Aligned_cols=120 Identities=22% Similarity=0.400 Sum_probs=105.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+..+|+..|+.+..+.++.+|++.+.+ ..||+||+|+.||+++|++++++||+.
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------~~~dlvi~D~~l~~~~g~~~~~~l~~~ 72 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNA-----------TPPDLVLLDIMMEPMDGWETLERIKTD 72 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------SCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhc-----------cCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 489999999999999999999999999999999999998853 369999999999999999999999974
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.. ...+|||++|+.........+..+|+++||.||++.++|..+|+++++.
T Consensus 73 ~~--~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 73 PA--TRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp TT--TTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred cc--cCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 32 2468999999987766666777788999999999999999999987653
No 80
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.67 E-value=1e-16 Score=154.55 Aligned_cols=121 Identities=23% Similarity=0.337 Sum_probs=108.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+...|+..|+.+..+.++.+|++.+ ....||+||+|+.||+++|+++++++|+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~-----------~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 71 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-----------NEPWPDLILLAWMLPGGSGIQFIKHLRRE 71 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTC-----------SSSCCSEEEEESEETTEEHHHHHHHHHTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHH-----------hccCCCEEEEecCCCCCCHHHHHHHHHhC
Confidence 4899999999999999999999999999999999998776 23479999999999999999999999974
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
.. .+++|||++|+..+.+...+++++|+++|+.||++.++|..+|+++++..
T Consensus 72 ~~--~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 72 SM--TRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp TT--TTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred cc--cCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 31 24689999999998888999999999999999999999999999987643
No 81
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.67 E-value=2e-16 Score=154.08 Aligned_cols=118 Identities=18% Similarity=0.264 Sum_probs=105.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
.+||||||++..+..++.+|++.|+.+. .+.++.+|++.+.+ .+||+||+|+.||+++|++++++||+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~-----------~~~dlii~d~~l~~~~g~~~~~~l~~ 70 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET-----------LKPDIVIIDVDIPGVNGIQVLETLRK 70 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHH-----------HCCSEEEEETTCSSSCHHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHh-----------cCCCEEEEecCCCCCChHHHHHHHHh
Confidence 4899999999999999999999999987 89999999998864 37999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
. .+.+|||++|+..+.+...+++++|+++|+.||++.++|..+|+++++.
T Consensus 71 ~----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 71 R----QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp T----TCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred c----CCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 4 3468999999999998999999999999999999999999999998754
No 82
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.67 E-value=1e-15 Score=152.83 Aligned_cols=121 Identities=25% Similarity=0.333 Sum_probs=109.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
..+||||||++..+..+...|+. |+.|..+.++.+|++.+.+ ..+||+||+|+.||+++|++++++||+
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~----------~~~~dlvi~D~~l~~~~g~~~~~~l~~ 72 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKK----------SDPFSVIMVDMRMPGMEGTEVIQKARL 72 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHH----------SCCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHc----------CCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 36899999999999999999986 9999999999999998853 235799999999999999999999996
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAG-MDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
.. +.+|||++|+..+.+...+++++| +++||.||++.++|..+|+++++...
T Consensus 73 ~~----~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 73 IS----PNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp HC----SSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred cC----CCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 42 468999999999999999999999 99999999999999999998876543
No 83
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.67 E-value=1.1e-15 Score=152.76 Aligned_cols=120 Identities=16% Similarity=0.252 Sum_probs=108.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCe--EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHH
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAK--FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRL 1038 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~--v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~ 1038 (1099)
.+.+||||||++..+..+..+|++.|+. +..+.++.+|++.+.+ .+||+||+|+.||+++|++++++
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~-----------~~~dlii~d~~l~~~~g~~~~~~ 82 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKA-----------HLPDVALLDYRMPGMDGAQVAAA 82 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHH-----------HCCSEEEEETTCSSSCHHHHHHH
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHh-----------cCCCEEEEeCCCCCCCHHHHHHH
Confidence 4578999999999999999999999954 5589999999999864 36999999999999999999999
Q ss_pred HhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1039 IRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1039 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
||+. .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++.
T Consensus 83 l~~~----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 83 VRSY----ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp HHHT----TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred HHhc----CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 9975 2468999999999999999999999999999999999999999998764
No 84
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.67 E-value=3.1e-16 Score=165.46 Aligned_cols=119 Identities=24% Similarity=0.311 Sum_probs=108.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
..+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||++++++||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~dlvl~D~~lp~~~g~~~~~~l~~ 72 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRR-----------PEQHGCLVLDMRMPGMSGIELQEQLTA 72 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCC-----------TTSCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhh-----------ccCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 358999999999999999999999999999999999998772 347999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.. +.+|||++|+..+.+...+++++|+++|+.||++.++|..+|+++++.
T Consensus 73 ~~----~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 73 IS----DGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp TT----CCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred cC----CCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 42 468999999999988899999999999999999999999999887654
No 85
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.67 E-value=1.4e-15 Score=152.33 Aligned_cols=121 Identities=18% Similarity=0.276 Sum_probs=110.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+.+||||||++..+..+...|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlvi~d~~l~~~~g~~~~~~l~ 74 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK-----------GTSVQLVISDMRMPEMGGEVFLEQVA 74 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHT-----------TSCCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-----------cCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 4578999999999999999999999999999999999999883 34799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAG-MDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
+.. +.+|||++|+..+.+...+++++| +++||.||++.++|..+|+++++..
T Consensus 75 ~~~----~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~ 127 (154)
T 2rjn_A 75 KSY----PDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLA 127 (154)
T ss_dssp HHC----TTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HhC----CCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHH
Confidence 742 468999999999999999999998 9999999999999999999887654
No 86
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.67 E-value=4e-16 Score=170.36 Aligned_cols=119 Identities=27% Similarity=0.371 Sum_probs=109.0
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 960 ~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
+...+||||||++..+..+..+|+..|+.|..+.++.+|++.+.+ ..||+||+|+.||++||++++++|
T Consensus 35 m~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------~~~DlvllD~~lp~~~G~~l~~~l 103 (249)
T 3q9s_A 35 MNEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARE-----------DHPDLILLDLGLPDFDGGDVVQRL 103 (249)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------SCCSEEEEECCSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-----------CCCCEEEEcCCCCCCCHHHHHHHH
Confidence 345789999999999999999999999999999999999998853 379999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
|+. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|+.+++
T Consensus 104 r~~-----~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 104 RKN-----SALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLR 153 (249)
T ss_dssp HTT-----CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred HcC-----CCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 962 35899999999999999999999999999999999999999998865
No 87
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.67 E-value=1.4e-15 Score=149.45 Aligned_cols=122 Identities=24% Similarity=0.296 Sum_probs=110.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh-cCCe-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGK-LGAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~-~G~~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
..+||||||++..+..+..+|+. .|+. +..+.++.+|++.+.+ ..||+||+|+.||+++|++++++|
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~-----------~~~dlii~d~~l~~~~g~~~~~~l 76 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT-----------VKPDVVMLDLMMVGMDGFSICHRI 76 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH-----------TCCSEEEEETTCTTSCHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHh-----------cCCCEEEEecccCCCcHHHHHHHH
Confidence 46899999999999999999999 8999 9999999999998853 369999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
|+.. ..+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++..
T Consensus 77 ~~~~--~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 77 KSTP--ATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp HTST--TTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred HhCc--cccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 9732 135689999999999999999999999999999999999999999987653
No 88
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.66 E-value=1.1e-15 Score=148.45 Aligned_cols=119 Identities=25% Similarity=0.373 Sum_probs=103.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
+.+||||||++..+..+..+|++.|+.|..+.++.+|++.+.+ .+||+||+|+.||+++|++++++||+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------~~~dlii~d~~l~~~~g~~~~~~l~~ 74 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST-----------FEPAIMTLDLSMPKLDGLDVIRSLRQ 74 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------TCCSEEEEESCBTTBCHHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh-----------cCCCEEEEecCCCCCCHHHHHHHHHh
Confidence 4689999999999999999999999999999999999998853 37999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
... ...+|||++++.... ...+++++|+++||.||++.++|..+|++...
T Consensus 75 ~~~--~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (132)
T 3lte_A 75 NKV--ANQPKILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVN 124 (132)
T ss_dssp TTC--SSCCEEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC
T ss_pred cCc--cCCCeEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcC
Confidence 532 124566666666555 78899999999999999999999999998764
No 89
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.66 E-value=4.1e-16 Score=153.45 Aligned_cols=121 Identities=19% Similarity=0.219 Sum_probs=100.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
..+||||||++..+..+..+|+.. +.+..+.++.+|++.+.+ .+||+||+|+.||+++|++++++||+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~-----------~~~dlvi~D~~l~~~~g~~~~~~l~~ 70 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDH-----------HHPDLVILDMDIIGENSPNLCLKLKR 70 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHH-----------HCCSEEEEETTC------CHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhc-----------CCCCEEEEeCCCCCCcHHHHHHHHHc
Confidence 368999999999999999999987 999999999999999864 36999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
... .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++..
T Consensus 71 ~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 71 SKG--LKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
T ss_dssp STT--CTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred Ccc--cCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhH
Confidence 532 14689999999999999999999999999999999999999999987754
No 90
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.66 E-value=4.1e-16 Score=154.18 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=101.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhh--cCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGK--LGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~--~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
.+||||||++..+..+...|+. .|+.+. .+.++.+|++.+. ...||+||+|+.||+++|++++++|
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~-----------~~~~dlvllD~~lp~~~g~~l~~~l 71 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIAL-----------KHPPNVLLTDVRMPRMDGIELVDNI 71 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHT-----------TSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4899999999999999999973 688877 8999999998873 3479999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
|+. .+.+|||++|+..+.+...+++++|+++||.||++.++|.++|+++++...
T Consensus 72 ~~~----~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 72 LKL----YPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp HHH----CTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred Hhh----CCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 974 246899999999888888899999999999999999999999998876543
No 91
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.66 E-value=9.8e-16 Score=150.93 Aligned_cols=118 Identities=25% Similarity=0.272 Sum_probs=108.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+...|+..|++|..+.++.+|++.+. ...||+||+|+ ||+++|++++++||+.
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlvi~d~-~~~~~g~~~~~~l~~~ 72 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR-----------REKIDLVFVDV-FEGEESLNLIRRIREE 72 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHT-----------TSCCSEEEEEC-TTTHHHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-----------ccCCCEEEEeC-CCCCcHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999883 34799999999 9999999999999964
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
. +.+|||++|+..+.+...+++++|+++|+.||++.++|..+|+++++..
T Consensus 73 ~----~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 73 F----PDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp C----TTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred C----CCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 2 4689999999999999999999999999999999999999999987643
No 92
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.66 E-value=1.9e-15 Score=148.14 Aligned_cols=120 Identities=22% Similarity=0.226 Sum_probs=110.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC-CCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP-VMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP-~mdG~e~~r~I 1039 (1099)
..+||||||++..+..+...|+..|+.+. .+.++.+|++.+.+ ..||+||+|+.|| +++|++++++|
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~-----------~~~dlii~d~~~~~~~~g~~~~~~l 77 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPD-----------LRPDIALVDIMLCGALDGVETAARL 77 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH-----------HCCSEEEEESSCCSSSCHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHh-----------CCCCEEEEecCCCCCCCHHHHHHHH
Confidence 46899999999999999999999999999 59999999998864 2699999999999 79999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
|+. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++...
T Consensus 78 ~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 130 (140)
T 3cg0_A 78 AAG-----CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKK 130 (140)
T ss_dssp HHH-----SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred HhC-----CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccc
Confidence 975 35899999999999999999999999999999999999999999887643
No 93
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.66 E-value=9e-16 Score=148.37 Aligned_cols=122 Identities=20% Similarity=0.236 Sum_probs=93.9
Q ss_pred cHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchh
Q 001330 469 NLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQD 548 (1099)
Q Consensus 469 dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~ 548 (1099)
++.+.+++++..+ ..+++.+.++..... ......++..+.|++.||++||+||++.|.|.|.+...
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~------- 67 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPL---SVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVE------- 67 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCG---GGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEE-------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCcc---ccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeC-------
Confidence 5777888887766 456666655543221 11234468899999999999999999988887766432
Q ss_pred hhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCcc
Q 001330 549 IIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLG 628 (1099)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtG 628 (1099)
.. +.++|.|+|+||+++. .|
T Consensus 68 --------------------------------------~~-~~i~v~D~G~gi~~~~---------------------~G 87 (124)
T 3zxq_A 68 --------------------------------------DD-VRVEVVDDGVGISGDI---------------------TE 87 (124)
T ss_dssp --------------------------------------EE-EEEEEEECCCSSCGGG---------------------SH
T ss_pred --------------------------------------CC-EEEEEEECCCCCCccc---------------------cc
Confidence 12 6799999999999876 39
Q ss_pred ccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 629 LGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 629 LGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
|||+|||++++.|||++.+.+.++ .|++|++.+|++
T Consensus 88 lGL~~~~~~~~~~gG~i~~~~~~~--~G~~~~i~lP~~ 123 (124)
T 3zxq_A 88 SGLRNLRQRADDAGGEFTVENMPT--GGTLLRWSAPLR 123 (124)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTT--SSEEEEEEEECC
T ss_pred cCHHHHHHHHHHhCCEEEEEEcCC--CcEEEEEEEecC
Confidence 999999999999999999987653 489999998874
No 94
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.65 E-value=1.5e-15 Score=161.15 Aligned_cols=118 Identities=19% Similarity=0.299 Sum_probs=107.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcC-CeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLG-AKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G-~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+||||||++..+..+..+|+..| +.+ ..+.++.+|++.+.+ .+||+||+|+.||++||++++++||
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~-----------~~~dlvllD~~lp~~~g~~~~~~lr 74 (215)
T 1a04_A 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-----------LDPDLILLDLNMPGMNGLETLDKLR 74 (215)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH-----------HCCSEEEEETTSTTSCHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHh-----------cCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 489999999999999999999875 887 689999999998854 2699999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+. .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++.
T Consensus 75 ~~----~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 75 EK----SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp HS----CCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred Hh----CCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 74 2468999999999999999999999999999999999999999988753
No 95
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.65 E-value=5.5e-16 Score=147.00 Aligned_cols=114 Identities=30% Similarity=0.408 Sum_probs=102.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+...|+..|+.+..+.++.+|++.+.+ ..||+||+|+.||+++|+++++++|+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------~~~dlvl~D~~l~~~~g~~~~~~l~~~ 70 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS-----------GNYDLVILDIEMPGISGLEVAGEIRKK 70 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------SCCSEEEECSCCSSSCHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-----------CCCCEEEEECCCCCCCHHHHHHHHHcc
Confidence 379999999999999999999999999999999999998853 369999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~ 1093 (1099)
. +++|||++|+..... .+++++|+++|+.||++.++|..++++++
T Consensus 71 ~----~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 71 K----KDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp C----TTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred C----CCCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 3 468999999876544 67889999999999999999999998763
No 96
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.65 E-value=1.8e-15 Score=151.71 Aligned_cols=120 Identities=23% Similarity=0.317 Sum_probs=109.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
+.+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dliild~~l~~~~g~~~~~~l~~ 71 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLS-----------ADFAGIVISDIRMPGMDGLALFRKILA 71 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCC-----------TTCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHH-----------hCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 358999999999999999999999999999999999998773 347999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
. .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++..
T Consensus 72 ~----~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 122 (155)
T 1qkk_A 72 L----DPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKR 122 (155)
T ss_dssp H----CTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred h----CCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHH
Confidence 5 24689999999999999999999999999999999999999999887654
No 97
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.65 E-value=4.6e-16 Score=153.16 Aligned_cols=123 Identities=22% Similarity=0.314 Sum_probs=111.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
..+||||||++..+..+...|+..|++|..+.++.+|++.+.+ ..||+||+|+.||+++|++++++||+
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------~~~dlii~d~~l~~~~g~~~~~~l~~ 75 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKK-----------GFSGVVLLDIMMPGMDGWDTIRAILD 75 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-----------CCCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHh-----------cCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4689999999999999999999999999999999999998852 46999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
.. ..+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++...
T Consensus 76 ~~--~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 129 (142)
T 3cg4_A 76 NS--LEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVR 129 (142)
T ss_dssp TT--CCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred hc--ccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 32 1346899999999888888899999999999999999999999999887654
No 98
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.64 E-value=1.3e-15 Score=160.45 Aligned_cols=118 Identities=25% Similarity=0.370 Sum_probs=107.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
.+||||||++..+..+...|+..||.+. .+.++.+|++.+.+ ..||+||+|+.||+++|++++++||+
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~-----------~~~dlvi~D~~~p~~~g~~~~~~l~~ 82 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL-----------HKPDLVIMDVKMPRRDGIDAASEIAS 82 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-----------HCCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh-----------cCCCEEEEeCCCCCCChHHHHHHHHh
Confidence 5899999999999999999999999988 89999999998854 26999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
.. ..|||++|+..+.+...+++++|+++||.||++.++|..+|+++++..
T Consensus 83 ~~-----~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 83 KR-----IAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp TT-----CSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred cC-----CCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 42 249999999999999999999999999999999999999999877643
No 99
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.64 E-value=2.2e-15 Score=147.66 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=108.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC-----CCCHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP-----VMNGWEAT 1036 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP-----~mdG~e~~ 1036 (1099)
..+||||||++..+..+...|+..|+.|..+.++.+|++.+.+ ..||+||+|+.|| +++|++++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------~~~dlvi~d~~~~~~~~~~~~g~~~~ 71 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLRE-----------ENPEVVLLDMNFTSGINNGNEGLFWL 71 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHH-----------SCEEEEEEETTTTC-----CCHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHc-----------CCCCEEEEeCCcCCCCCCCccHHHHH
Confidence 3589999999999999999999999999999999999998853 3699999999999 99999999
Q ss_pred HHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1037 RLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1037 r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
++||+. .+.+|||++|+....+...+++++|+++|+.||++.++|..+|+++++.
T Consensus 72 ~~l~~~----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 72 HEIKRQ----YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp HHHHHH----CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred HHHHhh----CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 999974 3468999999999999999999999999999999999999999988754
No 100
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.64 E-value=2.6e-15 Score=147.65 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=104.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+...|+.. +.+..+.++.+|++.+.+ ..||+||+|+.||+++|++++++||+.
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~-----------~~~dlvl~D~~lp~~~g~~~~~~l~~~ 69 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEE-----------EWVQVIICDQRMPGRTGVDFLTEVRER 69 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHH-----------SCEEEEEEESCCSSSCHHHHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhc-----------CCCCEEEEeCCCCCCcHHHHHHHHHHh
Confidence 37999999999999999999875 999999999999998853 369999999999999999999999974
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHc-CCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDA-GMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~a-G~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.+++|+|++|+..+.+...+++.. |+++||.||++.++|..+|+++.+.
T Consensus 70 ----~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 119 (139)
T 2jk1_A 70 ----WPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARM 119 (139)
T ss_dssp ----CTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred ----CCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHH
Confidence 246899999999888888888876 5999999999999999999887654
No 101
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.64 E-value=1.8e-15 Score=179.82 Aligned_cols=120 Identities=25% Similarity=0.359 Sum_probs=109.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+..+|+..|+.|..+.+|.+|++.+.+ ..||+||+|+.||+|||++++++||+.
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~-----------~~~dlvllD~~mp~~~G~~~~~~l~~~ 70 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR-----------DLPDIILLDVMMPGMDGFTVCRKLKDD 70 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------HCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-----------CCCCEEEEcCCCCCCCHHHHHHHHhcC
Confidence 479999999999999999999999999999999999998854 269999999999999999999999974
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.. .+++|||++|+..+.+...+++++|+++||.||++.++|..+|+++++.
T Consensus 71 ~~--~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~ 121 (459)
T 1w25_A 71 PT--TRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRF 121 (459)
T ss_dssp TT--TTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred cc--cCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 32 2468999999999999999999999999999999999999999987653
No 102
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.63 E-value=2e-15 Score=161.06 Aligned_cols=119 Identities=28% Similarity=0.467 Sum_probs=109.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.+ ..||+||+|+.||+++|++++++||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------~~~dlvllD~~l~~~~g~~~~~~lr~~ 71 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN-----------EPFDVVILDIMLPVHDGWEILKSMRES 71 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------SCCSEEEEESCCSSSCHHHHHHHHHHT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 589999999999999999999999999999999999998853 379999999999999999999999974
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
. +++|||++|+..+.+...+++++|+++|+.||++.++|..+|+.+++..
T Consensus 72 ~----~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 121 (225)
T 1kgs_A 72 G----VNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 121 (225)
T ss_dssp T----CCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred C----CCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhc
Confidence 2 4689999999999999999999999999999999999999999987653
No 103
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.63 E-value=8e-16 Score=179.33 Aligned_cols=118 Identities=25% Similarity=0.329 Sum_probs=105.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++.++..++.+|++.||+|..+.+|.+|++.+.+ ..||+||+|++||+|||++++++||+.
T Consensus 6 ~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-----------~~~dlvllD~~mp~~~G~~~~~~lr~~ 74 (394)
T 3eq2_A 6 ATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES-----------EQPDLVICDLRMPQIDGLELIRRIRQT 74 (394)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHH-----------SCCSEEEECCCSSSSCTHHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhh-----------CCCCEEEEcCCCCCCCHHHHHHHHHhh
Confidence 589999999999999999999999999999999999999853 379999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL-QKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi-~~~~L~~~l~~i~~~ 1095 (1099)
.+++|||++|+..+.+...+++++|+++||.||+ +.++|..+|+++++.
T Consensus 75 ----~~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~ 124 (394)
T 3eq2_A 75 ----ASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDR 124 (394)
T ss_dssp ----TCCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHH
T ss_pred ----CCCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhh
Confidence 2469999999999999999999999999999999 688898888877654
No 104
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.63 E-value=2e-15 Score=144.79 Aligned_cols=119 Identities=18% Similarity=0.323 Sum_probs=107.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC-CCCHHHHHHHHhc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP-VMNGWEATRLIRK 1041 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP-~mdG~e~~r~IR~ 1041 (1099)
.+||||||++..+..+...|+..|+.+..+.++.+|++.+.+ ..||+||+|+.|| +++|+++++++|+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------~~~dlvi~d~~~~~~~~g~~~~~~l~~ 74 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRR-----------DRPDLVVLAVDLSAGQNGYLICGKLKK 74 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHH-----------HCCSEEEEESBCGGGCBHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHh-----------cCCCEEEEeCCCCCCCCHHHHHHHHhc
Confidence 589999999999999999999999999999999999998854 2699999999999 9999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
... .+++|||++ +....+...+++++|+++|+.||++.++|..+|+++++.
T Consensus 75 ~~~--~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 75 DDD--LKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp STT--TTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred Ccc--ccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 531 246899999 888888889999999999999999999999999988653
No 105
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.62 E-value=2.4e-15 Score=174.95 Aligned_cols=118 Identities=25% Similarity=0.377 Sum_probs=109.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
+||||||++..+..+..+|+..||.|..|.++.+|++.+.+ ..||+||+|+.||+|||++++++||+.
T Consensus 2 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-----------~~~DlvllD~~mp~~dG~ell~~lr~~- 69 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE-----------KHFNVVLLDLLLPDVNGLEILKWIKER- 69 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH-----------SCCSEEEEESBCSSSBHHHHHHHHHHH-
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------CCCCEEEEeCCCCCCCHHHHHHHHHhh-
Confidence 79999999999999999999999999999999999998853 379999999999999999999999974
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
.+++|||++|++.+.+...+++++|+++||.||++.++|..+|+++++..
T Consensus 70 ---~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 70 ---SPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp ---CTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred ---CCCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999887643
No 106
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.62 E-value=3.2e-15 Score=149.52 Aligned_cols=118 Identities=25% Similarity=0.304 Sum_probs=107.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh-cCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGK-LGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~-~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
..+||||||++..+..+...|+. .|+.+. .+.++.+|++.+.+ ..||+||+|+.||+++|++++++|
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~-----------~~~dlii~D~~l~~~~g~~~~~~l 73 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRE-----------TTPDIVVMDLTLPGPGGIEATRHI 73 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHT-----------TCCSEEEECSCCSSSCHHHHHHHH
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhc-----------CCCCEEEEecCCCCCCHHHHHHHH
Confidence 46899999999999999999998 799988 89999999998853 469999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
|+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++
T Consensus 74 ~~~~----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 74 RQWD----GAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp HHHC----TTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred HHhC----CCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 9752 46899999999999999999999999999999999999999988764
No 107
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.62 E-value=5e-15 Score=145.83 Aligned_cols=125 Identities=23% Similarity=0.352 Sum_probs=107.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCC--eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGA--KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~--~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
..+||||||++..+..+...|+..|+ .+..+.++.+|++.+.+.. . .....||+||+|+.||+++|++++++|
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~----~-~~~~~~dlii~D~~l~~~~g~~~~~~l 81 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRN----K-ENKIHPKLILLDINIPKMNGIEFLKEL 81 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCT----T-CCCCCCSEEEEETTCTTSCHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcc----c-ccCCCCCEEEEecCCCCCCHHHHHHHH
Confidence 35899999999999999999999998 9999999999999884200 0 001479999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~ 1093 (1099)
|+... .+++|||++|+....+...+++++|+++||.||++.++|.+++....
T Consensus 82 ~~~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~ 133 (143)
T 2qvg_A 82 RDDSS--FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQ 133 (143)
T ss_dssp TTSGG--GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred HcCcc--ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 97531 14689999999999999999999999999999999999999977654
No 108
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.62 E-value=1e-15 Score=180.89 Aligned_cols=117 Identities=17% Similarity=0.254 Sum_probs=91.1
Q ss_pred EEccHHHHHHHHHHHHHhHhhccCCC----eEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccc
Q 001330 507 VRGDRVKLKQILCNLVSNSMKFTSEG----HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVE 582 (1099)
Q Consensus 507 v~gD~~rL~QIL~NLL~NAiKfT~~G----~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (1099)
+.+|+.+|.|||.|||+||++|+..| .|.|.+.....
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~--------------------------------------- 66 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD--------------------------------------- 66 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEET---------------------------------------
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCC---------------------------------------
Confidence 45688999999999999999999775 46666543210
Q ss_pred cCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCC-CCCCCccccHHHHHHHHHhcCCE-EEEEecCCCceeEEEE
Q 001330 583 RNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL-GHQEGLGLGLGIVQSMVHLMKGE-IAIADKEPGERGVCFR 660 (1099)
Q Consensus 583 ~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~-~~~~GtGLGLaIvk~lVe~~gG~-I~v~s~~~gg~Gt~f~ 660 (1099)
+...+.|+|.|+|+||++++++++|++||+.++.+. +..+|+||||+||+.++++|||+ |+|.+..++|. ++|+
T Consensus 67 ---~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~-~~~~ 142 (471)
T 1mu5_A 67 ---ARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSK-RIYT 142 (471)
T ss_dssp ---TTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCS-EEEE
T ss_pred ---cCcEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCc-eEEE
Confidence 011578999999999999999999999998876532 34579999999999999999999 99988775532 2555
Q ss_pred EEEecc
Q 001330 661 FNVLLT 666 (1099)
Q Consensus 661 ~~l~l~ 666 (1099)
|.+|++
T Consensus 143 ~~Lpl~ 148 (471)
T 1mu5_A 143 FKLKID 148 (471)
T ss_dssp EEEEEC
T ss_pred EEEecc
Confidence 555554
No 109
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.62 E-value=1.4e-15 Score=147.91 Aligned_cols=117 Identities=16% Similarity=0.259 Sum_probs=104.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
..+||||||++..+..++.+|+..|+.+..+.++.+|++.+ ... ||+||+|+.||+++|++++++||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~-~dlvi~D~~l~~~~g~~~~~~l~~ 70 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLS-----------LNK-QDIIILDLMMPDMDGIEVIRHLAE 70 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSC-----------CCT-TEEEEEECCTTTTHHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhh-----------ccC-CCEEEEeCCCCCCCHHHHHHHHHh
Confidence 36899999999999999999999988999999999997765 234 999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCH-----HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMA-----GVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~-----~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
.. +.+|||++|+..+. +...+++++|+++||.||++.++|..+|+++.+
T Consensus 71 ~~----~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~ 124 (135)
T 3eqz_A 71 HK----SPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSN 124 (135)
T ss_dssp TT----CCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSC
T ss_pred CC----CCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHh
Confidence 43 46899999998875 667778999999999999999999999998754
No 110
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.61 E-value=2.4e-15 Score=161.43 Aligned_cols=120 Identities=27% Similarity=0.352 Sum_probs=110.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
..+||||||++..+..+...|+..|+.|..+.++.+|++.+.+ ..||+||+|+.||+++|+++++.||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------~~~dlvllD~~l~~~~g~~~~~~l~~ 75 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE-----------NRPDAIVLDINMPVLDGVSVVTALRA 75 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------SCCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh-----------CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3589999999999999999999999999999999999998853 37999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++..
T Consensus 76 ~~----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (233)
T 1ys7_A 76 MD----NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126 (233)
T ss_dssp TT----CCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cC----CCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 42 4689999999999888899999999999999999999999999987654
No 111
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.61 E-value=1.6e-15 Score=181.08 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=90.7
Q ss_pred EEcc-HHHHHHHHHHHHHhHhhccCCC----eEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCcccccccc
Q 001330 507 VRGD-RVKLKQILCNLVSNSMKFTSEG----HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSV 581 (1099)
Q Consensus 507 v~gD-~~rL~QIL~NLL~NAiKfT~~G----~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (1099)
+.+| +.+|.|||.||++||++|+..| .|.|.+.....
T Consensus 24 i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~-------------------------------------- 65 (530)
T 2zbk_B 24 GFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD-------------------------------------- 65 (530)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEET--------------------------------------
T ss_pred EEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCC--------------------------------------
Confidence 3444 5999999999999999999875 46666543210
Q ss_pred ccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCC-CCCCCccccHHHHHHHHHhcCCE-EEEEecCCCceeEEE
Q 001330 582 ERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL-GHQEGLGLGLGIVQSMVHLMKGE-IAIADKEPGERGVCF 659 (1099)
Q Consensus 582 ~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~-~~~~GtGLGLaIvk~lVe~~gG~-I~v~s~~~gg~Gt~f 659 (1099)
+...+.|+|.|+|+||++++++++|++|++.++.+. ...+|+||||+||+.++++|||+ |++.+..++|. ++|
T Consensus 66 ----~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~-~~~ 140 (530)
T 2zbk_B 66 ----ARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSK-RIY 140 (530)
T ss_dssp ----TTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCS-EEE
T ss_pred ----cCceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCe-EEE
Confidence 011578999999999999999999999988876533 34579999999999999999999 99988765432 355
Q ss_pred EEEEecc
Q 001330 660 RFNVLLT 666 (1099)
Q Consensus 660 ~~~l~l~ 666 (1099)
+|.+|++
T Consensus 141 ~~~Lpl~ 147 (530)
T 2zbk_B 141 TFKLKID 147 (530)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 5555554
No 112
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.60 E-value=5e-15 Score=169.84 Aligned_cols=118 Identities=23% Similarity=0.310 Sum_probs=106.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHh-hcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLG-KLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~-~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
.+||||||++..+..+..+|. ..|+.|..+.||.+|++.+.+ ..||+||+|+.||+|||++++++||+
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~-----------~~~dlvl~D~~mp~~~G~~~~~~l~~ 87 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQ-----------IKPTVILQDLVMPGVDGLTLLAAYRG 87 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHH-----------HCCSEEEEESBCSSSBHHHHHHHHTT
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHh-----------CCCCEEEEeCCCCCCCHHHHHHHHhc
Confidence 479999999999999999996 468999999999999999854 26999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~ 1093 (1099)
... .+.+|||++|+..+.+...+++++|+++||.||++.++|..+++.+.
T Consensus 88 ~~~--~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~ 137 (358)
T 3bre_A 88 NPA--TRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHS 137 (358)
T ss_dssp STT--TTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHH
T ss_pred Ccc--cCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHH
Confidence 532 24689999999999999999999999999999999999999998764
No 113
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.60 E-value=1.2e-14 Score=143.29 Aligned_cols=120 Identities=17% Similarity=0.238 Sum_probs=104.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhc-CCe-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKL-GAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~-G~~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
..+||||||++..+..+...|+.. |+. +..+.++.+|++.+.+ ..||+||+|+.||+++|++++++|
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-----------~~~dlvi~d~~l~~~~g~~~~~~l 77 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH-----------NKVDAIFLDINIPSLDGVLLAQNI 77 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHH-----------CCCSEEEECSSCSSSCHHHHHHHH
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-----------CCCCEEEEecCCCCCCHHHHHHHH
Confidence 368999999999999999999986 788 4589999999998853 369999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhhh
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETMEK 1098 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~~ 1098 (1099)
|+.. ..+|||++|+.. +...+++++|+++||.||++.++|..+|+++++..++
T Consensus 78 ~~~~----~~~~ii~~s~~~--~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (143)
T 2qv0_A 78 SQFA----HKPFIVFITAWK--EHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQ 130 (143)
T ss_dssp TTST----TCCEEEEEESCC--TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HccC----CCceEEEEeCCH--HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 9742 356799999874 3677899999999999999999999999998877653
No 114
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.59 E-value=2.4e-15 Score=148.93 Aligned_cols=113 Identities=25% Similarity=0.299 Sum_probs=92.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc-CCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHH
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKL-GAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRL 1038 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~-G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~ 1038 (1099)
.+.+||||||++..+..++.+|++. |+.+. .+.++.+|++.+.+ ...||+||+|+.||+++|++++++
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~----------~~~~dlvilD~~l~~~~g~~~~~~ 81 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAA----------QPNVDLILLDIEMPVMDGMEFLRH 81 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH----------CTTCCEEEECTTSCCCTTCHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhc----------CCCCCEEEEeCCCCCCCHHHHHHH
Confidence 3468999999999999999999988 88864 89999999998853 126999999999999999999999
Q ss_pred HhccccccCCCccEEEEec--cCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 001330 1039 IRKEEEQYDVHIPIIALTA--HAMAGVASKIVDAGMDFHLTKPLQKDKLLDV 1088 (1099)
Q Consensus 1039 IR~~~~~~~~~ipIIalTa--~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~ 1088 (1099)
||+.. ..|+|++|+ ....+...+++++|+++||.||++.++|..+
T Consensus 82 lr~~~-----~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 128 (145)
T 3kyj_B 82 AKLKT-----RAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLE 128 (145)
T ss_dssp HHHHC-----CCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC-----
T ss_pred HHhcC-----CCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 99742 278888887 5566678899999999999999995544433
No 115
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.59 E-value=1.3e-14 Score=142.13 Aligned_cols=117 Identities=14% Similarity=0.144 Sum_probs=105.8
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 960 ~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
..+.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.+ ..||+|| ||+++|++++++|
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------~~~dlvi----~~~~~g~~~~~~l 80 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI-----------RNYDLVM----VSDKNALSFVSRI 80 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-----------SCCSEEE----ECSTTHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHc-----------CCCCEEE----EcCccHHHHHHHH
Confidence 356799999999999999999999999999999999999998853 3699999 9999999999999
Q ss_pred hccccccCC-CccEEEEeccCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHHh
Q 001330 1040 RKEEEQYDV-HIPIIALTAHAMAGVASKIVDAGMDFHLTKPL-QKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1040 R~~~~~~~~-~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi-~~~~L~~~l~~i~~~~ 1096 (1099)
|+. + .+|||++|+..+.+...+++++|+++||.||+ +.++|..+|+++++..
T Consensus 81 ~~~-----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 81 KEK-----HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp HHH-----STTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred Hhc-----CCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 974 3 58999999999999999999999999999999 9999999999886543
No 116
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.59 E-value=5.8e-15 Score=158.14 Aligned_cols=117 Identities=22% Similarity=0.332 Sum_probs=108.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.+ ..||+||+|+.||+++|++++++||+.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------~~~dlvllD~~l~~~~g~~~~~~l~~~ 73 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDR-----------AGADIVLLDLMLPGMSGTDVCKQLRAR 73 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH-----------HCCSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------cCCCEEEEECCCCCCCHHHHHHHHHcC
Confidence 489999999999999999999999999999999999998854 269999999999999999999999973
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+.+|||++|+..+.+...+++++|+++|+.||++.++|..+|+++++.
T Consensus 74 -----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 74 -----SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp -----CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred -----CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 358999999998888899999999999999999999999999998764
No 117
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.58 E-value=1.3e-14 Score=140.59 Aligned_cols=120 Identities=23% Similarity=0.365 Sum_probs=105.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-CCHHHHHHHH
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-MNGWEATRLI 1039 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-mdG~e~~r~I 1039 (1099)
...+||||||++..+..+...|+..|+.+..+.++.+|++.+.+ ...||+||+|+.||+ ++|++++++|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------~~~~dlvi~d~~l~~~~~g~~~~~~l 73 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKS----------GAAIDGVVTDIRFCQPPDGWQVARVA 73 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT----------TCCCCEEEEESCCSSSSCHHHHHHHH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHc----------CCCCCEEEEeeeCCCCCCHHHHHHHH
Confidence 34689999999999999999999999999999999999998842 126999999999997 9999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
|+.. +++|||++|+....+...+++++| +|+.||++.++|..+|+++.+..
T Consensus 74 ~~~~----~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 74 REID----PNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp HHHC----TTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred HhcC----CCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 9752 468999999998888877777776 89999999999999999987643
No 118
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.58 E-value=5.9e-15 Score=145.26 Aligned_cols=119 Identities=33% Similarity=0.439 Sum_probs=101.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+..+|+..|+.+..+.++.+|++.+.+ ..||+||+|+.||+++|++++++||+.
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~-----------~~~dlvllD~~lp~~~g~~~~~~l~~~ 79 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN-----------RQFDVIIMDIQMPVMDGLEAVSEIRNY 79 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHH-----------SCCSEEEECTTCCSSCHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhc-----------CCCCEEEEeCCCCCCcHHHHHHHHHhh
Confidence 589999999999999999999999999999999999998853 369999999999999999999999974
Q ss_pred ccc-cCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQ-YDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~-~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
... ..+.+|||++|+........ ++|+++||.||++.++|..+|+++++.
T Consensus 80 ~~~~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 80 ERTHNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp HHHHTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred hhhcCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 211 12468999999876554432 789999999999999999999987653
No 119
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.58 E-value=8.7e-15 Score=158.12 Aligned_cols=116 Identities=28% Similarity=0.427 Sum_probs=107.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+...|+..|+.|..+.++.+|++.+.+ ..||+||+|+.||+++|++++++||+.
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------~~~dlvilD~~l~~~~g~~~~~~lr~~ 74 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE-----------LRPDLVLLDLMLPGMNGIDVCRVLRAD 74 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHH-----------HCCSEEEEESSCSSSCHHHHHHHHHTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------CCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 589999999999999999999999999999999999998854 269999999999999999999999964
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
..+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++
T Consensus 75 -----~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 75 -----SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp -----CCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCC
T ss_pred -----CCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 25899999999998899999999999999999999999999998754
No 120
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.58 E-value=6.5e-15 Score=146.70 Aligned_cols=102 Identities=18% Similarity=0.353 Sum_probs=80.4
Q ss_pred ccHHHHHHHHHHHHHhHhhccCC----CeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccC
Q 001330 509 GDRVKLKQILCNLVSNSMKFTSE----GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERN 584 (1099)
Q Consensus 509 gD~~rL~QIL~NLL~NAiKfT~~----G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (1099)
.|...+.+++.||++||+||+.. |.|.|.+.....
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~----------------------------------------- 73 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDG----------------------------------------- 73 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETT-----------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCC-----------------------------------------
Confidence 58889999999999999999965 677776643321
Q ss_pred CCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEe
Q 001330 585 PNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVL 664 (1099)
Q Consensus 585 ~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~ 664 (1099)
.+.|+|.|+|+||+ .++++|++|++.+. ...|+||||+||+++++ ++.+.+.. +.|++|++.+|
T Consensus 74 ----~~~i~V~D~G~g~~--~~~~~~~~~~~~~~----~~~~~GlGL~iv~~~~~----~i~~~~~~--~~Gt~v~~~lp 137 (145)
T 1th8_A 74 ----VVHLTVRDEGVGIP--DIEEARQPLFTTKP----ELERSGMGFTIMENFMD----EVIVESEV--NKGTTVYLKKH 137 (145)
T ss_dssp ----EEEEEEEECSSCCS--CHHHHTCCC-----------CCCSCHHHHHHHHSS----EEEEEEET--TTEEEEEEEEC
T ss_pred ----EEEEEEEECCCCcC--hHHHhhcccccCCC----CCCCCcchHHHHHHHHh----eEEEEeCC--CCCEEEEEEEe
Confidence 57899999999999 89999999998764 23589999999999998 89997765 35999999998
Q ss_pred ccc
Q 001330 665 LTA 667 (1099)
Q Consensus 665 l~~ 667 (1099)
+..
T Consensus 138 ~~~ 140 (145)
T 1th8_A 138 GIH 140 (145)
T ss_dssp CC-
T ss_pred ccc
Confidence 753
No 121
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.57 E-value=5.1e-15 Score=148.04 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=97.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhc-CC-eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKL-GA-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~-G~-~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+||||||++..+..+..+|+.. |+ .+..+.++.+|++.+.+ ...||+||+|+.||+++|++++++||
T Consensus 4 ~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~----------~~~~dlvi~d~~l~~~~g~~~~~~l~ 73 (154)
T 2qsj_A 4 TVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEA----------DNTVDLILLDVNLPDAEAIDGLVRLK 73 (154)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHT----------TCCCSEEEECC------CHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhc----------cCCCCEEEEeCCCCCCchHHHHHHHH
Confidence 58999999999999999999988 88 68899999999998842 14799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+. .+.+|||++|+..+.+...+++++|+++|+.||++.++|..+|+++++.
T Consensus 74 ~~----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 74 RF----DPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp HH----CTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred Hh----CCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 75 2468999999998888999999999999999999999999999988754
No 122
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.57 E-value=2.3e-16 Score=151.02 Aligned_cols=119 Identities=24% Similarity=0.329 Sum_probs=107.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+|||+||++..+..+...|+..|+.+..+.++.+|++.+. ...||+||+|+.||+++|+++++++|+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 72 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA-----------SKTPDVLLSDIRMPGMDGLALLKQIKQR 72 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSS-----------SCCCSCEEECSCSSHHHHCSTHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-----------cCCCCEEEEeeecCCCCHHHHHHHHHhh
Confidence 47999999999999999999999999999999999998772 3479999999999999999999999964
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
.+.+|||++|+..+.+...+++++|+++|+.||++.++|..+++++++..
T Consensus 73 ----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 73 ----HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp ----CTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred ----CCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 24689999999988888889999999999999999999999999987654
No 123
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.57 E-value=1.5e-14 Score=153.97 Aligned_cols=115 Identities=29% Similarity=0.393 Sum_probs=105.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+||||||++..+..+...|+..| .|..+.++.+|++.+ ..||+||+|+.||+++|++++++||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~-------------~~~dlvllD~~lp~~~g~~~~~~lr~~ 68 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE-------------EAFHVVVLDVMLPDYSGYEICRMIKET 68 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC-------------SCCSEEEEESBCSSSBHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc-------------CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 379999999999999999999999 899999999998654 369999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++.
T Consensus 69 ~----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 69 R----PETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp C----TTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred C----CCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 3 468999999999999999999999999999999999999999998764
No 124
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.56 E-value=1.7e-14 Score=136.09 Aligned_cols=115 Identities=21% Similarity=0.272 Sum_probs=102.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
++||||||++..+..+...|+..|+.+..+.++.+|++.+.+ ..||+||+|+.||+++|+++++.+|+.
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~-----------~~~dlii~d~~~~~~~~~~~~~~l~~~ 70 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDL-----------LQPIVILMAWPPPDQSCLLLLQHLREH 70 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-----------HCCSEEEEECSTTCCTHHHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHh-----------cCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 589999999999999999999999999999999999998854 269999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~ 1093 (1099)
.. .+.+|||++|+....+ +++++|+++|+.||++.++|..++++++
T Consensus 71 ~~--~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 71 QA--DPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp CC--CSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred cc--cCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 31 2468999999987665 8999999999999999999999987654
No 125
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.56 E-value=2.3e-14 Score=145.61 Aligned_cols=118 Identities=28% Similarity=0.396 Sum_probs=100.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcC-Ce-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLG-AK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G-~~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
..+||||||++..+..+..+|++.| +. +..+.++.+|++.+.+ ..||+||+|+.||+++|++++++|
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-----------~~~dlvilD~~l~~~~g~~l~~~l 93 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIE-----------LKPDVITMDIEMPNLNGIEALKLI 93 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH-----------HCCSEEEECSSCSSSCHHHHHHHH
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhcc-----------CCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3589999999999999999999875 33 4579999999998864 269999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHH--HHHHHHHcCCCEEEeCCCC---------HHHHHHHHHHHHHH
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAG--VASKIVDAGMDFHLTKPLQ---------KDKLLDVVKSIDET 1095 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~--~~~~~l~aG~ddyL~KPi~---------~~~L~~~l~~i~~~ 1095 (1099)
|+.. + +|||++|+....+ ...+++++|+++||.||++ .++|.+++++++..
T Consensus 94 r~~~----~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 94 MKKA----P-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp HHHS----C-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred HhcC----C-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 9742 3 7999999977643 6778999999999999999 67788887776553
No 126
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.55 E-value=3.3e-15 Score=160.16 Aligned_cols=118 Identities=20% Similarity=0.187 Sum_probs=107.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcC-CeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLG-AKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G-~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+||||||++..+..+..+|+..| +.+ ..+.++.+|++.+.+ ..||+||+|+.||++||++++++||
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~-----------~~~dlvllD~~lp~~~g~~~~~~lr 70 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPA-----------ARPDVAVLDVRLPDGNGIELCRDLL 70 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHH-----------HCCSEEEECSEETTEEHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh-----------cCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 379999999999999999999887 884 479999999998854 2699999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+. .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++.
T Consensus 71 ~~----~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 121 (225)
T 3c3w_A 71 SR----MPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAG 121 (225)
T ss_dssp HH----CTTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh----CCCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcC
Confidence 74 3468999999999999999999999999999999999999999988764
No 127
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.55 E-value=6.5e-15 Score=172.10 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=105.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhh-cCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGK-LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~-~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
.+||||||++..+..+..+|++ .|+.|..|.||.+|++.+.+. ..||+||+|+.||+|||++++++||+
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~----------~~~DlvllDi~mP~~dG~ell~~l~~ 73 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC----------GHVDIAICDLQMSGMDGLAFLRHASL 73 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH----------SCEEEEEECSSCSSSCHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC----------CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 5899999999999999999998 578999999999999998531 36999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCH-----HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1042 EEEQYDVHIPIIALTAHAMA-----GVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~-----~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
.. +.+|||++|+.... ....+++++|+++||.||++.++|..+|+++++..
T Consensus 74 ~~----~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 74 SG----KVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp HT----CEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred cC----CCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 53 34678888877765 66778999999999999999999999999987654
No 128
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.55 E-value=2.3e-15 Score=161.21 Aligned_cols=118 Identities=7% Similarity=-0.070 Sum_probs=101.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhh-cCCeEEE-ECCHHHHHHH-HHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGK-LGAKFEV-CRNGKEAFDH-VCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~-~G~~v~~-a~~g~eAl~~-l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
.+||||||++..+..++.+|+. .|+.+.. +.++.+++.. +. ...||+||+|+.||+|||++++++|
T Consensus 8 ~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~dlvllD~~mp~~~G~~~~~~l 76 (225)
T 3klo_A 8 LNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPE-----------SRSIQMLVIDYSRISDDVLTDYSSF 76 (225)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSG-----------GGGCCEEEEEGGGCCHHHHHHHHHH
T ss_pred eEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhh-----------ccCCCEEEEeCCCCCCCHHHHHHHH
Confidence 5899999999999999999994 5888754 4667776543 31 2469999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
|+. ..+++|||++|+..+.+....++++|+++||.||++.++|..+|+++++
T Consensus 77 r~~---~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 128 (225)
T 3klo_A 77 KHI---SCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQ 128 (225)
T ss_dssp HHH---HCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHT
T ss_pred HHh---hCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHC
Confidence 972 1346899999999998899999999999999999999999999998865
No 129
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.55 E-value=8.2e-15 Score=143.68 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=100.0
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCC-CCccEEEEecCCCCCCHHHHHHH
Q 001330 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKA-LPYDYIMMDCEMPVMNGWEATRL 1038 (1099)
Q Consensus 960 ~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~-~~~DlIlmDi~MP~mdG~e~~r~ 1038 (1099)
..+.+||||||++..+..+...|+..|+.+..+.++.+|++.+. . ..||+||+|+.||+++|++++++
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-----------~~~~~dlvilD~~l~~~~g~~~~~~ 81 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRS-----------QLSTCDLLIVSDQLVDLSIFSLLDI 81 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGG-----------GGGSCSEEEEETTCTTSCHHHHHHH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHH-----------hCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 35679999999999999999999999999999999999998773 2 36999999999999999999999
Q ss_pred HhccccccCCCccEEEEe-ccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1039 IRKEEEQYDVHIPIIALT-AHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1039 IR~~~~~~~~~ipIIalT-a~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
||+. .+.+|||++| +..+.+. .+++ +++|+.||++.++|..+|+++++
T Consensus 82 l~~~----~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 82 VKEQ----TKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp HTTS----SSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCC
T ss_pred HHhh----CCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHH
Confidence 9973 3468999999 8776665 5565 99999999999999999988654
No 130
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.55 E-value=1.3e-14 Score=151.75 Aligned_cols=115 Identities=20% Similarity=0.250 Sum_probs=102.7
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+.+||||||++..+..+...|+..||.+..+.++.+|+ ...||+||+|+.||+|||. +++.+|
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al---------------~~~~dlvl~D~~mp~~~g~-l~~~~~ 74 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF---------------DVPVDVVFTSIFQNRHHDE-IAALLA 74 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC---------------SSCCSEEEEECCSSTHHHH-HHHHHH
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC---------------CCCCCEEEEeCCCCccchH-HHHHHh
Confidence 346899999999999999999999999999998888764 1369999999999999999 889888
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
... +++|||++|+..+.+...+++++|+++||.||++.++|..+|+.+++.
T Consensus 75 ~~~----~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 125 (196)
T 1qo0_D 75 AGT----PRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRI 125 (196)
T ss_dssp HSC----TTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHH
T ss_pred ccC----CCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHH
Confidence 642 468999999999999999999999999999999999999999877654
No 131
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.51 E-value=1e-13 Score=147.76 Aligned_cols=113 Identities=14% Similarity=0.169 Sum_probs=103.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+|| ||+++|+++++.||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-----------~~~~dlvi----lp~~~g~~~~~~lr~~- 65 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD-----------IRNYDLVM----VSDKNALSFVSRIKEK- 65 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHT-----------TSCCSEEE----ECCTTHHHHHHHHHHH-
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHh-----------cCCCCEEE----eCCCCHHHHHHHHHhC-
Confidence 6999999999999999999999999999999999999883 34799999 9999999999999975
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPL-QKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi-~~~~L~~~l~~i~~~ 1095 (1099)
. .++|||++|+..+.+...+++++|+++||.||+ +.++|..+|+++++.
T Consensus 66 ~---~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 66 H---SSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp C---TTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred C---CCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 2 258999999999999999999999999999999 999999999987643
No 132
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.50 E-value=4e-14 Score=155.51 Aligned_cols=103 Identities=19% Similarity=0.299 Sum_probs=86.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhc-CCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKL-GAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~-G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
.+||||||++..++.+...|+.. |+.+. +.++.+++..+ ....||+||+|++||+|||++++++||+
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~-~~~~~~~~~~~-----------~~~~~dlvllD~~mP~~~G~~~~~~lr~ 72 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEID-AFDTLEGARHC-----------QGDEYVVALVDLTLPDAPSGEAVKVLLE 72 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEE-EESSTGGGTTC-----------CTTTEEEEEEESCBTTBTTSHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEE-EeChHHHHHHh-----------hcCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 58999999999999999999764 77775 55566665443 2347999999999999999999999996
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKD 1083 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~ 1083 (1099)
. .+|||++|++.+.+...+++++|+++||.||+...
T Consensus 73 ~------~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~ 108 (259)
T 3luf_A 73 R------GLPVVILTADISEDKREAWLEAGVLDYVMKDSRHS 108 (259)
T ss_dssp T------TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHHH
T ss_pred C------CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchhH
Confidence 2 48999999999999999999999999999997543
No 133
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.47 E-value=3.2e-12 Score=151.75 Aligned_cols=270 Identities=17% Similarity=0.185 Sum_probs=177.5
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.+|+++++++..+..+..++.. .|..+..+.+.......+...
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~-~~~~v~~a~~~~~al~~~~~~------------------------------------ 44 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTA-EYYEVSTAMDGPTALAMAARD------------------------------------ 44 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHH------------------------------------
T ss_pred CeEEEEeCCHHHHHHHHHHHHH-cCCEEEEECCHHHHHHHHhcC------------------------------------
Confidence 3578888888899999999987 788888888877655444322
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+... ..+.++.++........+++.+..... .........
T Consensus 45 --------------------------~~dlvllD~~mp~~~-G~~~~~~l~~~~~~~~~pii~lt~~~~--~~~~~~a~~ 95 (459)
T 1w25_A 45 --------------------------LPDIILLDVMMPGMD-GFTVCRKLKDDPTTRHIPVVLITALDG--RGDRIQGLE 95 (459)
T ss_dssp --------------------------CCSEEEEESCCSSSC-HHHHHHHHHHSTTTTTSCEEEEECSSC--HHHHHHHHH
T ss_pred --------------------------CCCEEEEcCCCCCCC-HHHHHHHHhcCcccCCCCEEEEECCCC--HHHHHHHHH
Confidence 123455665543322 233444444432223445555543321 122234455
Q ss_pred CccccccccCCCcchHHHHHhhcccccCCcccCCcccccccchhhhcccCCCCCcccccccccccccccccccchhhhhh
Q 001330 869 PICDHVISRPFHGSRLIEVLKLLPECKGASQRNFPKLKMEASSQELQHCTDPNPLNKLKSFGAEAGASISSHCSSLQQVA 948 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1099)
.|.+.++.||+....|...++.+....... .+..... ..... . ...
T Consensus 96 ~Ga~~~l~KP~~~~~l~~~i~~~~~~~~~~--------~~~~~~~-~~~~~---------~----------------~~~ 141 (459)
T 1w25_A 96 SGASDFLTKPIDDVMLFARVRSLTRFKLVI--------DELRQRE-ASGRR---------M----------------GVI 141 (459)
T ss_dssp HTCCEEEESSCCHHHHHHHHHHHHHHHHHH--------HHHHHHH-TTTTS---------S----------------TTT
T ss_pred cCCCEEEeCCCCHHHHHHHHHHHHHHHhhh--------hHhhhhc-ccccc---------h----------------hhh
Confidence 788999999999999988876542211000 0000000 00000 0 000
Q ss_pred hccCCCCCCCCCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC
Q 001330 949 AQSDGKCSEKPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP 1028 (1099)
Q Consensus 949 ~~~~~~~~~~~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP 1028 (1099)
.. ........+.+|++|||+..++..+...|.. .+.+....++.+++.. . ...||+|+||++||
T Consensus 142 ~~---~~~~~~~~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~-~-----------~~~~dlil~D~~mp 205 (459)
T 1w25_A 142 AG---AAARLDGLGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKIS-A-----------GGPVDLVIVNAAAK 205 (459)
T ss_dssp TC---CCCCCSSCSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHHH-H-----------HSSCSEEEEETTCS
T ss_pred hh---hhhhhcCCCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhhh-c-----------cCCCCEEEEecCCC
Confidence 00 0000112346899999999999888888875 4667788888888522 1 13689999999999
Q ss_pred CCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1029 VMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1029 ~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
+|||+++++.||..... ..+||+++|+....+...+|+++|+++|+.||++.+++...+..+.+..
T Consensus 206 ~~dG~~~~~~ir~~~~~--~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 206 NFDGLRFTAALRSEERT--RQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp SSCHHHHHHHHHTSGGG--TTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhCccc--cCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999976532 4689999999999999999999999999999999999999888776643
No 134
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.46 E-value=3.9e-13 Score=153.92 Aligned_cols=117 Identities=18% Similarity=0.306 Sum_probs=101.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhc-CCe-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKL-GAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~-G~~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+||||||++..+..+..+|+.. |++ +..+.|+.+|++.+.+ ..||+|++|+.||+|||++++++||
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~-----------~~pDlVllDi~mp~~dGlell~~l~ 72 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK-----------FNPDVLTLDVEMPRMDGLDFLEKLM 72 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH-----------HCCSEEEEECCCSSSCHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhc-----------cCCCEEEEECCCCCCCHHHHHHHHH
Confidence 58999999999999999999986 888 5699999999998864 2699999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCH--HHHHHHHHcCCCEEEeCCCCH---------HHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMA--GVASKIVDAGMDFHLTKPLQK---------DKLLDVVKSIDET 1095 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~--~~~~~~l~aG~ddyL~KPi~~---------~~L~~~l~~i~~~ 1095 (1099)
+.. + +|||++|+.... +...+++++|+++||.||++. ++|.+.|+.+.+.
T Consensus 73 ~~~----p-~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 73 RLR----P-MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp HSS----C-CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred hcC----C-CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 642 3 899999998765 458889999999999999984 7788888776543
No 135
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.44 E-value=1.5e-13 Score=172.61 Aligned_cols=119 Identities=11% Similarity=0.084 Sum_probs=107.6
Q ss_pred EEEEEeCCH-HH-------HHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC----CC
Q 001330 964 KFLVVEDDA-IV-------LKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV----MN 1031 (1099)
Q Consensus 964 ~ILvVdDd~-~~-------~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~----md 1031 (1099)
+||||||++ .. ++.+...|++.||+|..|.||++|++.+.+ ...||+||+|++||+ ||
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~----------~~~~d~vilDi~lp~~~~~~~ 71 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS----------NEAIDCLMFSYQMEHPDEHQN 71 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT----------TCCCSEEEEECCCCSHHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc----------CCCCcEEEEeCCCCccccccc
Confidence 799999999 88 999999999999999999999999998842 224999999999999 99
Q ss_pred HHHHHHHHhccccccCCCccEEEEeccCC-HHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHHHHh
Q 001330 1032 GWEATRLIRKEEEQYDVHIPIIALTAHAM-AGVASKIVDAGMDFHLTKPLQKDK-LLDVVKSIDETM 1096 (1099)
Q Consensus 1032 G~e~~r~IR~~~~~~~~~ipIIalTa~~~-~~~~~~~l~aG~ddyL~KPi~~~~-L~~~l~~i~~~~ 1096 (1099)
|++++++||+.. ..+|||++|+... .+++...+..|+|||++||++..+ |..+|++++++.
T Consensus 72 G~~ll~~iR~~~----~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 72 VRQLIGKLHERQ----QNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHHHHHHHHHHS----TTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----CCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 999999999752 3699999999888 888999999999999999999999 889998887764
No 136
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.39 E-value=3.7e-13 Score=162.79 Aligned_cols=117 Identities=15% Similarity=0.214 Sum_probs=88.2
Q ss_pred eEEccHHHHHHHHHHHHHhHhhccCC-C---eEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCcccccccc
Q 001330 506 HVRGDRVKLKQILCNLVSNSMKFTSE-G---HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSV 581 (1099)
Q Consensus 506 ~v~gD~~rL~QIL~NLL~NAiKfT~~-G---~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (1099)
.+.+|+.+|.|++.||++||++|+.. | .|.|.+.....
T Consensus 30 ~~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~-------------------------------------- 71 (621)
T 2q2e_B 30 GFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGP-------------------------------------- 71 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETT--------------------------------------
T ss_pred EEecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCC--------------------------------------
Confidence 36789999999999999999999974 4 56654432110
Q ss_pred ccCCCceeEEEEEEeCCCCCCcccHhhhcccccccccc--CCCCCCCccccHHHHHHHHHhcCCE-EEEEecCCCc-eeE
Q 001330 582 ERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET--ALGHQEGLGLGLGIVQSMVHLMKGE-IAIADKEPGE-RGV 657 (1099)
Q Consensus 582 ~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s--~~~~~~GtGLGLaIvk~lVe~~gG~-I~v~s~~~gg-~Gt 657 (1099)
..+.|+|.|+|+|||+++++++|++|+.+.+- .....+|+||||++|+.+++.|||+ |.+.+...++ .|+
T Consensus 72 ------~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~ 145 (621)
T 2q2e_B 72 ------DYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAH 145 (621)
T ss_dssp ------TEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEE
T ss_pred ------cEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccce
Confidence 14789999999999999999999877544321 1122379999999999999999999 8888776543 577
Q ss_pred EEEEEEecc
Q 001330 658 CFRFNVLLT 666 (1099)
Q Consensus 658 ~f~~~l~l~ 666 (1099)
+|+|++|..
T Consensus 146 ~~~~~lp~~ 154 (621)
T 2q2e_B 146 YYELMINTS 154 (621)
T ss_dssp EEECCCCSS
T ss_pred EEEEecchh
Confidence 777766553
No 137
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.75 E-value=6.6e-09 Score=111.02 Aligned_cols=93 Identities=24% Similarity=0.325 Sum_probs=76.1
Q ss_pred CeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHH
Q 001330 987 AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASK 1066 (1099)
Q Consensus 987 ~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~ 1066 (1099)
+.|..+.|+.+|++.+.+ ..||+||+|++||+++|++++++||+..+ ..++++++.....+...+
T Consensus 6 ~~v~~~~~~~~a~~~~~~-----------~~~dlvl~D~~~p~~~g~~~~~~l~~~~~----~~~i~vi~~~~~~~~~~~ 70 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKE-----------LKPDIVTMDITMPEMNGIDAIKEIMKIDP----NAKIIVCSAMGQQAMVIE 70 (237)
T ss_dssp EEEECCCSSSTTHHHHHH-----------HCCSCEEEECCSTTSSHHHHHHHHHHHSS----SCCEEEECCSSTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHh-----------cCCCEEEEeCCCCCCCHHHHHHHHHHhCC----CCCEEEEECCCCHHHHHH
Confidence 455568999999998864 26999999999999999999999997532 345666666666889999
Q ss_pred HHHcCCCEEEeCC--CCHHHHHHHHHHHHH
Q 001330 1067 IVDAGMDFHLTKP--LQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1067 ~l~aG~ddyL~KP--i~~~~L~~~l~~i~~ 1094 (1099)
++++|+++|+.|| ++..++...+.+...
T Consensus 71 ~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 71 AIKAGAKDFIVNTAAVENPSLITQIAQTFG 100 (237)
T ss_dssp HHHTTCCEEEESHHHHHCTHHHHHHHHHHT
T ss_pred HHHCCHHheEeCCcccChHHHHHHHHHHhC
Confidence 9999999999999 788888888877654
No 138
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.52 E-value=1.1e-07 Score=108.76 Aligned_cols=88 Identities=18% Similarity=0.210 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEE
Q 001330 513 KLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEF 592 (1099)
Q Consensus 513 rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 592 (1099)
++.|++.||++||+++. .+.|.|.+.. . ....|
T Consensus 34 ~~~~vl~eLv~NAiDA~-a~~I~I~i~~--~--------------------------------------------~~~~I 66 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAG-ATNIDLKLKD--Y--------------------------------------------GVDLI 66 (365)
T ss_dssp CHHHHHHHHHHHHHHTT-CSEEEEEEEG--G--------------------------------------------GTSEE
T ss_pred hHHHHHHHHHHHHHHCC-CCEEEEEEEe--C--------------------------------------------CcEEE
Confidence 47899999999999986 4566665421 1 02358
Q ss_pred EEEeCCCCCCcccHhhhccccccccccCC-----CCCCCc-cccHHHHHHHHHhcCCEEEEEecCC
Q 001330 593 EVDDTGKGIPKDKQNSIFEEFVQVKETAL-----GHQEGL-GLGLGIVQSMVHLMKGEIAIADKEP 652 (1099)
Q Consensus 593 ~V~DtG~GI~~e~l~~IFe~F~q~d~s~~-----~~~~Gt-GLGLaIvk~lVe~~gG~I~v~s~~~ 652 (1099)
+|.|+|+||++++++++|++|++.+.... ....|. |+||+-+..+. ++.|.++..
T Consensus 67 ~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~rG~gl~si~~vs-----~v~v~t~~~ 127 (365)
T 1h7s_A 67 EVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALS-----DVTISTCHA 127 (365)
T ss_dssp EEEECSCCCCGGGSGGGGC----------CCTTCSEEESSSSSHHHHHHHHS-----EEEEEEECT
T ss_pred EEEECCCCcCHHHHHHHhhhccccccccccchhcccccCCCCchhhhhhhhc-----cEEEEEccC
Confidence 99999999999999999999998754321 012355 99998776552 566665543
No 139
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.51 E-value=1e-07 Score=110.11 Aligned_cols=89 Identities=25% Similarity=0.290 Sum_probs=67.9
Q ss_pred EccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCc
Q 001330 508 RGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNL 587 (1099)
Q Consensus 508 ~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (1099)
.++...+.+++.|+++||+++ ..+.|.|.+.. .
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~~--~-------------------------------------------- 63 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLNE--D-------------------------------------------- 63 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEECT--T--------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEEc--C--------------------------------------------
Confidence 678999999999999999996 34567665421 0
Q ss_pred eeEEEEEEeCCCCCCcccHhh--------hccccccccc---cC-CCCCCCccccHHHHHHHHHhcCCEE
Q 001330 588 LQFEFEVDDTGKGIPKDKQNS--------IFEEFVQVKE---TA-LGHQEGLGLGLGIVQSMVHLMKGEI 645 (1099)
Q Consensus 588 ~~l~i~V~DtG~GI~~e~l~~--------IFe~F~q~d~---s~-~~~~~GtGLGLaIvk~lVe~~gG~I 645 (1099)
-.|+|.|+|+|||++++++ ||.+|+...+ .. ....|+.|+||++|+.+++.+.-++
T Consensus 64 --~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~~v~t 131 (390)
T 1kij_A 64 --GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTVVEV 131 (390)
T ss_dssp --SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEEEEE
T ss_pred --CEEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccCccccccCCCCCcceeeecccccceEEEE
Confidence 0489999999999999988 9999887643 11 1133579999999999998765443
No 140
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.38 E-value=9.5e-07 Score=100.10 Aligned_cols=89 Identities=17% Similarity=0.217 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEE
Q 001330 513 KLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEF 592 (1099)
Q Consensus 513 rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 592 (1099)
++.+++.||++||+++. ...|.|.+.. .. ...|
T Consensus 24 ~~~~~v~ELi~NaidA~-a~~I~I~i~~--~~--------------------------------------------~~~i 56 (333)
T 1b63_A 24 RPASVVKELVENSLDAG-ATRIDIDIER--GG--------------------------------------------AKLI 56 (333)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEG--GG--------------------------------------------TSEE
T ss_pred CHHHHHHHHHHHHHHCC-CCeEEEEEEe--CC--------------------------------------------ceEE
Confidence 57899999999999997 4566665421 10 1358
Q ss_pred EEEeCCCCCCcccHhhhccccccccccC------CCCCCCccccHHHHHHHHHhcCCEEEEEecCCC
Q 001330 593 EVDDTGKGIPKDKQNSIFEEFVQVKETA------LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653 (1099)
Q Consensus 593 ~V~DtG~GI~~e~l~~IFe~F~q~d~s~------~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~g 653 (1099)
+|.|+|+||++++++.+|++|++.+... ....|+.|+||+.+..+ +++.|.++..+
T Consensus 57 ~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~v-----s~l~v~s~~~~ 118 (333)
T 1b63_A 57 RIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSV-----SRLTLTSRTAE 118 (333)
T ss_dssp EEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTT-----SEEEEEEECTT
T ss_pred EEEEcCCCcCHHHHHHhhhcccccCccccchhhhccccCccccchhhhhcC-----CcEEEEEecCC
Confidence 9999999999999999999999874311 12346799999987554 36788777644
No 141
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.19 E-value=3.8e-06 Score=95.04 Aligned_cols=97 Identities=15% Similarity=0.238 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEE
Q 001330 513 KLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEF 592 (1099)
Q Consensus 513 rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 592 (1099)
++.+++.||++||+++. .+.|.|.+. ... ...|
T Consensus 28 ~~~~vv~eLv~NAidA~-a~~I~I~i~--~~~--------------------------------------------~~~I 60 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK-STSIQVIVK--EGG--------------------------------------------LKLI 60 (348)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--GGG--------------------------------------------TSEE
T ss_pred CHHHHHHHHHHHHHHcC-CCEEEEEEE--eCC--------------------------------------------EEEE
Confidence 57899999999999994 456666542 110 2358
Q ss_pred EEEeCCCCCCcccHhhhccccccccccCC------CCCCCccccHHHHHHHHHhcCCEEEEEecCCCc-eeEEEEE
Q 001330 593 EVDDTGKGIPKDKQNSIFEEFVQVKETAL------GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE-RGVCFRF 661 (1099)
Q Consensus 593 ~V~DtG~GI~~e~l~~IFe~F~q~d~s~~------~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg-~Gt~f~~ 661 (1099)
+|.|+|+|||+++++.+|+||++.+.... ...|=-|.||+=+-.+. ++.|.++..+. .|....+
T Consensus 61 ~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-----~l~v~sr~~~~~~~~~~~~ 131 (348)
T 3na3_A 61 QIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVA-----HVTITTKTADGKCAYRASY 131 (348)
T ss_dssp EEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CCTTCHHHHHHHSS-----EEEEEEECTTCSSEEEEEE
T ss_pred EEEECCcCcChHHhhhhhccccccccCcchhhhccccCCcCChHHHHhhccc-----EEEEEEEECCCCceEEEEE
Confidence 99999999999999999999998864321 11233477886544432 68887766542 3544444
No 142
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.12 E-value=1.4e-05 Score=74.51 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 001330 369 REMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILN 448 (1099)
Q Consensus 369 ~e~~l~~~l~~~~~a~~~ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIn 448 (1099)
.|+..+...++++... .++....+..|++++||||||||++|.++++.+.+ +..+.++.|..++.+|..+++
T Consensus 37 dEi~~l~~~~n~m~~~--l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~------~~~~~~~~i~~~~~~l~~~i~ 108 (114)
T 3zcc_A 37 DEIGILAKSIERLRRS--LKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSE------QDGYLAESINKDIEECNAIIE 108 (114)
T ss_dssp SHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCG------GGHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHH
Confidence 4555555555555332 23334456778999999999999999999998743 124456899999999999999
Q ss_pred HHHHH
Q 001330 449 SVMEM 453 (1099)
Q Consensus 449 dlLdl 453 (1099)
++++|
T Consensus 109 ~ll~~ 113 (114)
T 3zcc_A 109 QFIDY 113 (114)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99987
No 143
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.08 E-value=5.9e-06 Score=96.12 Aligned_cols=90 Identities=20% Similarity=0.253 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHHHhHhhcc----CCCeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCC
Q 001330 510 DRVKLKQILCNLVSNSMKFT----SEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNP 585 (1099)
Q Consensus 510 D~~rL~QIL~NLL~NAiKfT----~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (1099)
+...+..++.+|+.||++|+ ..|.|.|++.....
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~------------------------------------------ 331 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGD------------------------------------------ 331 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTT------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCC------------------------------------------
Confidence 34678999999999999998 35778887654311
Q ss_pred CceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 586 NLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 586 ~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
..++++|.|+|+|+|+. +. ..+.|+||.|++++++.++ +... + .|+++++.+++
T Consensus 332 --~~l~i~V~D~G~g~~~~------------~~-----~~~~G~GL~lv~~l~~~~~----~~~~-~--~G~~v~~~~~~ 385 (399)
T 3ke6_A 332 --GNVRASVIDRGQWKDHR------------DG-----ARGRGRGLAMAEALVSEAR----IMHG-A--GGTTATLTHRL 385 (399)
T ss_dssp --SEEEEEEEESCBC-----------------------------CHHHHHTTSSEEE----EEEE-T--TEEEEEEEEEC
T ss_pred --CEEEEEEEECCCCCCCC------------CC-----CCCCCcHHHHHHHHHHhee----eEEC-C--CcEEEEEEEEc
Confidence 15889999999999976 11 1467999999999998654 4333 2 47788887776
Q ss_pred cc
Q 001330 666 TA 667 (1099)
Q Consensus 666 ~~ 667 (1099)
+.
T Consensus 386 ~~ 387 (399)
T 3ke6_A 386 SR 387 (399)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 144
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.92 E-value=1.2e-05 Score=91.85 Aligned_cols=97 Identities=15% Similarity=0.222 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEE
Q 001330 513 KLKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEF 592 (1099)
Q Consensus 513 rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 592 (1099)
++.+++.||++||+.+. ...|.|.+. ... ...|
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i~--~~~--------------------------------------------~~~i 57 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIFK--DYG--------------------------------------------LESI 57 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--TTT--------------------------------------------TSEE
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEEE--eCC--------------------------------------------EEEE
Confidence 57799999999999985 456666542 110 2369
Q ss_pred EEEeCCCCCCcccHhhhccccccccccCC-----CCCCCc-cccHHHHHHHHHhcCCEEEEEecCCCceeEEEEE
Q 001330 593 EVDDTGKGIPKDKQNSIFEEFVQVKETAL-----GHQEGL-GLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRF 661 (1099)
Q Consensus 593 ~V~DtG~GI~~e~l~~IFe~F~q~d~s~~-----~~~~Gt-GLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~ 661 (1099)
+|.|+|+||++++++.+|++|+..+.... ..+.|. |.||+-+-.+ +++.|.++..+..|....+
T Consensus 58 ~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~av-----S~l~V~sr~~~~~~~~~~~ 127 (367)
T 3h4l_A 58 ECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGI-----AKLSVITTTSPPKADKLEY 127 (367)
T ss_dssp EEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEETTHHHHHHHHS-----SEEEEEEESSTTCEEEEEE
T ss_pred EEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCccchHHHHhhcc-----CEEEEEEEECCCCEEEEEE
Confidence 99999999999999999999998764321 011232 6777654443 2688877764435655544
No 145
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.71 E-value=0.0002 Score=74.46 Aligned_cols=140 Identities=17% Similarity=0.121 Sum_probs=73.5
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHHHHH
Q 001330 397 ALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQLLEE 476 (1099)
Q Consensus 397 fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~ll~~ 476 (1099)
.+....||..+=|..|.|++++=. .++..+|+..+....+.. . .++++.. ..+..
T Consensus 24 ~LR~qrHdf~NkLqvI~GLlql~~-----ydea~~yI~~~~~~~q~~---~----~~~~i~~-------------P~la~ 78 (192)
T 1ixm_A 24 LLGHSRHDWMNKLQLIKGNLSLQK-----YDRVFEMIEEMVIDAKHE---S----KLSNLKT-------------PHLAF 78 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHH---H----HHHTTTC-------------HHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHH---H----HHHhCCC-------------HHHHH
Confidence 466677999999999999998632 244556655554444332 2 2344321 12334
Q ss_pred HHHHHHHhHHhcCCEE-EEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhcc-------CCCeEEEEEEEeccccchh
Q 001330 477 VVDMYYHVGIKKGVDV-VLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFT-------SEGHISVRAAVKKKSFKQD 548 (1099)
Q Consensus 477 v~~~~~~~a~~k~i~l-~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT-------~~G~I~v~~~~~~~~~~~~ 548 (1099)
++-.....+++.++++ .+++... +...+..+ .||++||+... ..+.|.|.+.....
T Consensus 79 lLl~K~~~a~e~~i~lev~~~~s~-------l~~~~~~l----gnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~----- 142 (192)
T 1ixm_A 79 DFLTFNWKTHYMTLEYEVLGEIKD-------LSAYDQKL----AKLMRKLFHLFDQAVSRESENHLTVSLQTDHP----- 142 (192)
T ss_dssp HHHHGGGSCCSSEEEEEEESSCCC-------CTTTHHHH----HHHHHHHHHHHHHHBCTTSCCEEEEEEECCCS-----
T ss_pred HHHHHHHHhccCCeEEEEecCccc-------cCCCcHHH----HHHHHHHHHHHHhhhccCCCCeEEEEEEEecC-----
Confidence 4444444455555555 3343221 11233333 55554444332 34567766532100
Q ss_pred hhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhcccccc
Q 001330 549 IIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQ 615 (1099)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q 615 (1099)
+ ..+.|+|.|+|+||+++.+++||+..|.
T Consensus 143 ------------------------------------~--~~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 143 ------------------------------------D--RQLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp ------------------------------------S--SSCEEEEEEESCBSCGGGCC--------
T ss_pred ------------------------------------C--CEEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 0 1478999999999999999999986553
No 146
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.41 E-value=7.9e-05 Score=79.31 Aligned_cols=57 Identities=14% Similarity=0.261 Sum_probs=35.9
Q ss_pred EEEEEeCCCCCCcccHhhhccccccccc----------cCCCCCCCccccHHHHHHHHHhcCCEEEEEecC
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKE----------TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~----------s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~ 651 (1099)
.|.|.|||+||+++++...|.++.+... ......|..|+|+.-+.. .+-++.|.++.
T Consensus 74 ~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~----~~~~v~v~S~~ 140 (220)
T 2wer_A 74 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL----VADRVQVISKS 140 (220)
T ss_dssp EEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhh----cCCeeEEEEec
Confidence 5899999999999999888876544210 111123457899865533 33445555443
No 147
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.40 E-value=0.00043 Score=64.01 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 001330 369 REMFLCAALIKQMNATEQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILN 448 (1099)
Q Consensus 369 ~e~~l~~~l~~~~~a~~~ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIn 448 (1099)
.|+..+...++.+... .+.....+..+++.+|||||||++.|.++++.+... ..+..+.+...+.++..+++
T Consensus 37 dEi~~l~~~~n~m~~~--l~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~ 108 (115)
T 3zrx_A 37 DEIGILAKSIERLRRS--LKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ------DGYLAESINKDIEECNAIIE 108 (115)
T ss_dssp SHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG------GHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHH
Confidence 3454444445544332 222233466789999999999999999999976432 25677889999999999999
Q ss_pred HHHHHHH
Q 001330 449 SVMEMSK 455 (1099)
Q Consensus 449 dlLdlsk 455 (1099)
+++++++
T Consensus 109 ~l~~~~~ 115 (115)
T 3zrx_A 109 QFIDYLR 115 (115)
T ss_dssp HHHTTCC
T ss_pred HHHHHhC
Confidence 9998763
No 148
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=97.17 E-value=0.004 Score=65.13 Aligned_cols=116 Identities=14% Similarity=0.215 Sum_probs=80.0
Q ss_pred chhhHHHHHhcccccccceeEeeccceeeEEEecCCceEEEEecCCCCcceeeccccCccccccccccccCCccccCchh
Q 001330 99 KVAPTLFLALSTIPHLSLVSYLGLDGLSFSYFNDGDQTLAVYSNSSFAANWYTQPVNRDTGMLYGNAIASIPIVSANASW 178 (1099)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 178 (1099)
++.+.|-......|.+..|.+...+|-+++... + . + ...++.+++|
T Consensus 55 ~~~~~L~~~~~~~~~~~~i~i~d~~G~~~~~~~------------------------~-~----~-----~~~~~~~r~~ 100 (217)
T 4dah_A 55 KMQSILEKTFDSEPRFSGLYFLNAKGDVTASTT------------------------E-L----K-----TKVNLADRSF 100 (217)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEEETTCBEEEESS------------------------C-C----S-----SCCBCTTSHH
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCcEEEecC------------------------C-C----C-----CCCCcchhHH
Confidence 455555555666788888888887776543210 0 0 1 2236788999
Q ss_pred hHhhhcCCCCcccccccc-cc-cccceeeeeeee---CCC--ceEEeccchHHHHHHhhhhhccccEEEEEcCCCcEEEe
Q 001330 179 FQEVINSTNGYSSLVTGL-NK-EEGSIFLHTFAM---DGT--GFISLGFPAKVVIDLFAALDFHGGDLHLAAADGQVIIQ 251 (1099)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~---~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 251 (1099)
|+++++++. ..|+.+. +. .+...+..++|| +|+ |++.+.++.+.+.++++.+.. ||+++|.|.+|++|+.
T Consensus 101 f~~a~~~~~--~~is~~~~~~~~g~~~i~ia~pi~~~~g~~~Gvl~~~i~l~~l~~~~~~~~~-gg~~~l~d~~G~ii~~ 177 (217)
T 4dah_A 101 FIKAKETKK--TVISDSYSSRITGQPIFTICVPVLDSKRNVTDYLVAAIQIDYLKNLINLLSP-DVYIEVVNQDGKMIFA 177 (217)
T ss_dssp HHHHHHHCS--CEECCCEECTTTCSEEEEEEEEEECTTSCEEEEEEEEEEHHHHHHHHHHHCT-TSCEEEEETTSCEEEE
T ss_pred HHHHHhcCC--cEEeceEEcCCCCCEEEEEEEEEECCCCCEEEEEEEEEcHHHHHHHHHhcCC-CcEEEEEcCCCCEEEe
Confidence 999997543 3444443 22 344556667786 354 999999999999999987655 4899999999999994
No 149
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=97.09 E-value=0.0053 Score=68.09 Aligned_cols=125 Identities=13% Similarity=0.133 Sum_probs=83.4
Q ss_pred HHHHhc-ccccccceeEeeccceeeEE-EecCCceEEEEecCCCCcceeeccccCccccccccccccCCccccCchhhHh
Q 001330 104 LFLALS-TIPHLSLVSYLGLDGLSFSY-FNDGDQTLAVYSNSSFAANWYTQPVNRDTGMLYGNAIASIPIVSANASWFQE 181 (1099)
Q Consensus 104 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~ 181 (1099)
+|..|. ..|...+|.++..+|...+- .++++..+.+ |- ....++.+++||++
T Consensus 68 ~~~~~~~~~~~~~~i~lid~~G~~i~~~~~~~~~~~~~-------------p~-------------~~l~n~~~R~yf~~ 121 (295)
T 3lid_A 68 MWSSVARNQKLYKQIRFLDTSGTEKVRIKYDFKTSIAG-------------PS-------------LILRDKSAREYFKY 121 (295)
T ss_dssp HHHHHHHHHCCEEEEEEEETTSBEEEEEEEETTTTEEE-------------EC-------------SCCCBCTTSHHHHH
T ss_pred HHHHHHhcCccccEEEEECCCCCEEEEEEccCCceeEc-------------Cc-------------cccccchhhHHHHH
Confidence 577766 68999999999999976543 2221111111 00 01126788899999
Q ss_pred hhcCCCCcccc-cccccc-------cccceeeeeeee--CCC--ceEEeccchHHHHHHhhhhhccccEEEEEcCCCcEE
Q 001330 182 VINSTNGYSSL-VTGLNK-------EEGSIFLHTFAM--DGT--GFISLGFPAKVVIDLFAALDFHGGDLHLAAADGQVI 249 (1099)
Q Consensus 182 ~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~--~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 249 (1099)
+++...|.... +...+. ++.+.+..+.|| +|+ |+|++.+....+.+.++..-..+++++|+|.+|.++
T Consensus 122 a~~~~~~~~~~s~~~~~~~~g~~~~~~~p~i~~a~pV~~~g~~~GVlv~~i~l~~l~~~~~~~~~~~~~~~l~d~~G~~l 201 (295)
T 3lid_A 122 AQSLDNEQISAWGIELERDKGELVYPLSPSLRILMPISVNDVRQGYLVLNVDIEYLSSLLNYSPVRDFHIELVKHKGFYI 201 (295)
T ss_dssp HHHSCTTCCEECCCEECEETTEECSSCCEEEEEEEEEEETTEEEEEEEEEEEHHHHHHHHSEETTTTEECEEEETTSBEE
T ss_pred HhcCCCCcEEEeCceecccCCcccCCCCCEEEEEEEEccCCeEEEEEEEEecHHHHHHHHhhcccCCCcEEEEcCCCCEE
Confidence 98765443322 333322 335567777887 565 999999999999998863123578999999999999
Q ss_pred Eecccccc
Q 001330 250 IQTKLQNT 257 (1099)
Q Consensus 250 ~~~~~~~~ 257 (1099)
+ +|+.
T Consensus 202 ~---~~~~ 206 (295)
T 3lid_A 202 A---SPDE 206 (295)
T ss_dssp E---CSCG
T ss_pred e---cCCc
Confidence 9 4554
No 150
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.00 E-value=0.0014 Score=75.49 Aligned_cols=51 Identities=24% Similarity=0.429 Sum_probs=38.0
Q ss_pred EEEEEeCCCCCCccc--------Hhhhccccccccc---cCCCCCCC-ccccHHHHHHHHHhc
Q 001330 591 EFEVDDTGKGIPKDK--------QNSIFEEFVQVKE---TALGHQEG-LGLGLGIVQSMVHLM 641 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~--------l~~IFe~F~q~d~---s~~~~~~G-tGLGLaIvk~lVe~~ 641 (1099)
.|+|.|+|+|||.++ ++.+|.+++.+.+ .....++| .|.||+.+..+.+.+
T Consensus 64 ~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~~l 126 (390)
T 1s16_A 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRV 126 (390)
T ss_dssp CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEE
T ss_pred EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHHHHhhccc
Confidence 389999999999998 6789999776532 11122345 899999999887644
No 151
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=96.99 E-value=0.0031 Score=68.24 Aligned_cols=129 Identities=10% Similarity=0.075 Sum_probs=79.7
Q ss_pred chhhHHHHHhcccccccceeEeeccceeeEEEecCCceEEEEecCCCCcceeeccccCccccccccccccCCcccc--Cc
Q 001330 99 KVAPTLFLALSTIPHLSLVSYLGLDGLSFSYFNDGDQTLAVYSNSSFAANWYTQPVNRDTGMLYGNAIASIPIVSA--NA 176 (1099)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~--~~ 176 (1099)
++...|-..+...|.+..+.+.+.+|.+-.. ..| ...||+. .|.+.-........++. ++
T Consensus 57 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--------~~~~~~~-----~~~~~~~~~~~~~~d~~~~~~ 118 (274)
T 3lic_A 57 KLKTVLTNRIQRNPDFFGSAIAFKPNTFPNK-----KLF--------SPYVYRS-----GSGFNYLDIGADGYDYTDGNW 118 (274)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEEECTTSSTTC-----SCB--------CEEEEEC-----SSSEEEEEHHHHTCCTTSSSC
T ss_pred HHHHHHHHHHhcCcceeEEEEEecCccCCCc-----ccc--------ceeEEEC-----CCceEEEeccccCCCCCCCCC
Confidence 4566666777888998888888877764221 111 1112221 00000000000012455 89
Q ss_pred hhhHhhhcCCCCccccccccc-cc-c-cceeeeeeee--CCC--ceEEeccchHHHHHHhhhhhccccEEEEEcCCCcEE
Q 001330 177 SWFQEVINSTNGYSSLVTGLN-KE-E-GSIFLHTFAM--DGT--GFISLGFPAKVVIDLFAALDFHGGDLHLAAADGQVI 249 (1099)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~-~~-~-~~~~~~~~~~--~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 249 (1099)
+||.++++++. ..|..+.- .. + ...+..++|+ +|+ |++.+.++.+.+.+.+. + .+|+++|.|.+|.+|
T Consensus 119 ~w~~~a~~~~~--~~~s~~~~~~~~~~~~~i~~~~pi~~~g~~~Gv~~~~i~l~~l~~~~~-~--~~g~~~l~d~~G~ii 193 (274)
T 3lic_A 119 DWWSKAINQVG--GYWSKAYFDEGAGNVLMITYAVPFGVQPDYFGVTTVDLALDRLPEQLG-I--APSRLVVLDDQGRLI 193 (274)
T ss_dssp HHHHTTTTTSS--CEECCCEECTTTTCSEEEEEEEEESCTTCCCEEEEEEEEGGGHHHHHT-S--CGGGEEEECTTSCEE
T ss_pred cHHHHHHhcCC--CEEEeeEEcCCCCceEEEEEEEEEccCCEEEEEEEEEEEHHHHHHHhc-c--CCceEEEECCCCCEE
Confidence 99999998443 33433322 22 2 2455566776 565 99999999999999998 6 778999999999999
Q ss_pred E
Q 001330 250 I 250 (1099)
Q Consensus 250 ~ 250 (1099)
+
T Consensus 194 ~ 194 (274)
T 3lic_A 194 F 194 (274)
T ss_dssp E
T ss_pred E
Confidence 9
No 152
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=96.93 E-value=0.015 Score=62.25 Aligned_cols=118 Identities=19% Similarity=0.353 Sum_probs=82.6
Q ss_pred hhhHHHHHhcccccccceeEeeccceeeEEEecCCceEEEEecCCCCcceeeccccCccccccccccccCCccccCchhh
Q 001330 100 VAPTLFLALSTIPHLSLVSYLGLDGLSFSYFNDGDQTLAVYSNSSFAANWYTQPVNRDTGMLYGNAIASIPIVSANASWF 179 (1099)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 179 (1099)
+...|.......|.+..|.+...+|- ... ++. + + .++.++.+++||
T Consensus 56 ~~~~L~~~~~~~~~~~~i~i~d~~G~-~~~-----------s~~-----~------~-----------~~~~~~~~r~~f 101 (254)
T 3lif_A 56 FNERLRALADNLPQLSDVAILDADGQ-LTY-----------ASV-----K------P-----------VPALDNSDRSYF 101 (254)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECTTSB-EEE-----------ESS-----S------S-----------EECCBCTTSHHH
T ss_pred HHHHHHHHHhcCCccceEEEECCCCC-Eec-----------CCC-----C------C-----------CCCCCcccHHHH
Confidence 44455555667888888888877776 321 110 0 0 022367889999
Q ss_pred HhhhcCCCCccccccccc-c-cccceeeeeeee---CCC--ceEEeccchHHHHHHhhhhhc-cccEEEEEcCCCcEEEe
Q 001330 180 QEVINSTNGYSSLVTGLN-K-EEGSIFLHTFAM---DGT--GFISLGFPAKVVIDLFAALDF-HGGDLHLAAADGQVIIQ 251 (1099)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~---~~~--~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~v~~ 251 (1099)
++++++..+...++.+.- . .+.+.+..+.|| +|+ |++.+.++.+.+.++++.+.. .+|+++|.|.+|++|+.
T Consensus 102 ~~a~~~~~~~~~is~p~~~~~~g~~~i~~~~pi~~~~g~~~Gvl~~~i~l~~l~~~~~~~~~~~~g~~~l~d~~G~ii~~ 181 (254)
T 3lif_A 102 RYHRANDDHTLLITGPIQSRTSGVWVFVVSRRLETTDGKFFGVVVATIESEYFSTFYKTFDLGPGGSISLLHSDGRLLIQ 181 (254)
T ss_dssp HHHHHCCCCCCEEEEEEECTTTCCEEEEEEEEEECTTCCEEEEEEEEECHHHHHHHHTTSCCCTTCEEEEEETTSBEEEE
T ss_pred HHHHhCCCCCeEECCceecCCCCcEEEEEEeeeeCCCCCEeEEEEEEECHHHHHHHHHhcCcCCCcEEEEEeCCCcEEEE
Confidence 999985545555655542 2 344556667776 354 999999999999999987664 67899999999999994
No 153
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=96.93 E-value=0.00026 Score=76.07 Aligned_cols=57 Identities=11% Similarity=0.237 Sum_probs=36.2
Q ss_pred EEEEEeCCCCCCcccHhhhcccccccccc------------CCCCCCCccccHHHHHHHHHhcCCEEEEEecC
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKET------------ALGHQEGLGLGLGIVQSMVHLMKGEIAIADKE 651 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~s------------~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~ 651 (1099)
.|.|.|+|+||+++++...|.++.+.... .....|..|+|+.-+-.+ +-++.|.++.
T Consensus 95 ~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~----~~~v~V~Sr~ 163 (235)
T 2ior_A 95 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIV----ADKVTVRTRA 163 (235)
T ss_dssp EEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGT----EEEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhC----cCeEEEEEec
Confidence 48999999999999999888766543210 011224689999754333 3345554443
No 154
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=96.77 E-value=0.00023 Score=77.63 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCCcccHhhhcccc
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEEF 613 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~F 613 (1099)
.|.|.|||+||+++++...|..+
T Consensus 76 ~l~I~DnGiGMt~edl~~~l~ti 98 (269)
T 1qy5_A 76 LLHVTDTGVGMTREELVKNLGTI 98 (269)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHhhhh
Confidence 58999999999999987766543
No 155
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=96.75 E-value=0.0016 Score=70.54 Aligned_cols=98 Identities=11% Similarity=0.122 Sum_probs=73.0
Q ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHH
Q 001330 958 KPLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATR 1037 (1099)
Q Consensus 958 ~~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r 1037 (1099)
..+.+++|||||||+..+..+..+|+..|+++..+.+ . ...+||++++|..||...+.
T Consensus 7 ~~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~-~-----------------~~~~~~~ii~d~~~~~~~~~---- 64 (254)
T 2ayx_A 7 EGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG-Q-----------------EPTPEDVLITDEVVSKKWQG---- 64 (254)
T ss_dssp CTTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS-C-----------------CCCTTCEEEEESSCSCCCCS----
T ss_pred cccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC-C-----------------CCCcCcEEEEcCCCcccccc----
Confidence 3467899999999999999999999999999988864 1 12469999999999986431
Q ss_pred HHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 001330 1038 LIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1038 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~ 1093 (1099)
..++.++...... ....+...++.||+...++...+.++.
T Consensus 65 ------------~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~ 104 (254)
T 2ayx_A 65 ------------RAVVTFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIY 104 (254)
T ss_dssp ------------SEEEEECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHH
T ss_pred ------------ceEEEEecccCCC----cccccCCceeccccchHHHHHHHHHHh
Confidence 1245555532210 012355689999999999988887765
No 156
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=96.70 E-value=0.0015 Score=71.14 Aligned_cols=59 Identities=14% Similarity=0.230 Sum_probs=38.1
Q ss_pred EEEEEeCCCCCCcccHhhhccccccccc----------cCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCC
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKE----------TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~----------s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~g 653 (1099)
.|.|.|||+||+++++...|.++.+... ......|..|+|+.-+..++ -++.|.++..+
T Consensus 116 ~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va----~~v~V~Sr~~~ 184 (264)
T 1yc1_A 116 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA----EKVTVITKHND 184 (264)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHE----EEEEEEEECTT
T ss_pred EEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCC----CEEEEEEecCC
Confidence 4899999999999999877766543321 11112345789998665543 45666555433
No 157
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*
Probab=96.51 E-value=0.0088 Score=65.43 Aligned_cols=134 Identities=15% Similarity=0.133 Sum_probs=84.6
Q ss_pred chhhHHHHHhcccccccceeEeeccceeeEEEecCCceEEEEecC-------CCCcceeeccccCccccccccccccCCc
Q 001330 99 KVAPTLFLALSTIPHLSLVSYLGLDGLSFSYFNDGDQTLAVYSNS-------SFAANWYTQPVNRDTGMLYGNAIASIPI 171 (1099)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 171 (1099)
++...|-..+...|.+..+.+.+.+|.+.... .. |.+. .+...|++. .|++ ...+..
T Consensus 57 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~G~~~~~~~~~-----~g~~----~~~~~~ 120 (291)
T 3li9_A 57 EAMSIIKRILNENPQLIGVYLGYEPDAFDGRD----KN---YINAPGHDSTGRFVPYCNKI-----NGPV----IIEPLV 120 (291)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEEECTTTTTSCG----GG---CTTCTTCCTTCCCCEEEECT-----TSSC----EEEECC
T ss_pred HHHHHHHHHHHhCCCeEEEEEEEcCCCCCCCc----hh---hcCCCCCCCCccEEEEEEec-----CCeE----EEEecC
Confidence 46666777778889888887776655431110 00 1110 011123331 2322 112334
Q ss_pred cccCchhhHhhhcCCCCcccccccccccccceeeeeeee--CCC--ceEEeccchHHHHHHhhhhh-ccccEEEEEcCCC
Q 001330 172 VSANASWFQEVINSTNGYSSLVTGLNKEEGSIFLHTFAM--DGT--GFISLGFPAKVVIDLFAALD-FHGGDLHLAAADG 246 (1099)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G 246 (1099)
++.+++||+++++++. ..|..+....+...+..++|| +|+ |++.+.++.+.+.+.++.+. ..+|+++|.|.+|
T Consensus 121 d~~~~~w~~~a~~~~~--~~~s~p~~~~~~~~i~~~~pi~~~g~~~Gvl~~~i~l~~l~~~~~~~~~~~~g~~~l~d~~G 198 (291)
T 3li9_A 121 HYDSSDYYQLPKTTGK--DTLTEPYFYEGIFMVSYDSPIFKNGEFAGIAGVDVPLEYVDDVASSIRTFDTGYAFMVSNTG 198 (291)
T ss_dssp CTTTSHHHHHHHHHCS--CEECCCEEETTEEEEEEEEEEEETTEEEEEEEEEEECHHHHHHHTTCCBTTTBEEEEECTTC
T ss_pred CCccchHHHHHHHhCC--CEEEccEEeCCEEEEEEEEEEEECCEEEEEEEEEeeHHHHHHHHHhCCcCCCeEEEEEeCCC
Confidence 6889999999998543 334333322345556666776 565 99999999999999998665 3678999999999
Q ss_pred cEEE
Q 001330 247 QVII 250 (1099)
Q Consensus 247 ~~v~ 250 (1099)
.+|+
T Consensus 199 ~ii~ 202 (291)
T 3li9_A 199 IFLS 202 (291)
T ss_dssp BBSC
T ss_pred eEEE
Confidence 9999
No 158
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}
Probab=96.35 E-value=0.0077 Score=65.89 Aligned_cols=139 Identities=12% Similarity=0.071 Sum_probs=84.5
Q ss_pred chhhHHHHHhcccccccceeEeeccceeeEEEecC-CceEEEEecC--CCCcceeeccccCccccccccccccCCccccC
Q 001330 99 KVAPTLFLALSTIPHLSLVSYLGLDGLSFSYFNDG-DQTLAVYSNS--SFAANWYTQPVNRDTGMLYGNAIASIPIVSAN 175 (1099)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 175 (1099)
++...|-..+...|.+..+.+.+.+|.+......- +.. ..|. .+...|++ +.|+.- ..+..++.+
T Consensus 56 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~G~~~~~~~~-----~~g~~~----~~~~~d~~~ 123 (290)
T 3lib_A 56 EALLILENLLRDNPHLLGTYVAFEPDAFDGKDAEYTNSP---AHDGTGRFVPYWNK-----MNGTAS----VAPLLHYDS 123 (290)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEEESTTTTTSCHHHHTTST---TCCTTCCCCEEEEC-----TTSSCE----EEECSCTTT
T ss_pred HHHHHHHHHHHhCCCeEEEEEEEcCCCCCCCchhhcCCC---CCCCCceEEEEEEe-----cCCeEE----EeecCCCCc
Confidence 46666777778888888887776655431110000 000 0000 01112333 123221 122346889
Q ss_pred chhhHhhhcCCCCcccccccccccccceeeeeeee--CCC--ceEEeccchHHHHHHhhhhhc-cccEEEEEcCCCcEEE
Q 001330 176 ASWFQEVINSTNGYSSLVTGLNKEEGSIFLHTFAM--DGT--GFISLGFPAKVVIDLFAALDF-HGGDLHLAAADGQVII 250 (1099)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~v~ 250 (1099)
++||+++++++. ..|..+....+...+..++|| +|+ |+|.+.++.+.+.+.++.+.. .+|+++|.|.+|.+|+
T Consensus 124 r~w~~~a~~~~~--~~~s~p~~~~~~~~i~~~~pi~~~g~~~Gvl~~~i~l~~l~~~~~~~~~~~~g~~~l~d~~G~ii~ 201 (290)
T 3lib_A 124 SDYYQLPKATEK--DVLTEPYFYEGVFMVSYVSPIMKEGEFAGIGGVDVSLEYVDEVVSKVRTFDTGYAFMVSNSGVILS 201 (290)
T ss_dssp SHHHHHHHHHCS--CEECCCEEETTEEEEEEEEEEEETTEEEEEEEEEEEHHHHHHHHHHCCBTTTBCEEEECTTCBBCC
T ss_pred chHHHHHHHcCC--CEEEcCEEeCCeEEEEEEEEEEECCEEEEEEEEEEeHHHHHHHHHhCCcCCceEEEEEeCCCeEEE
Confidence 999999998543 234333222345556667776 565 999999999999999986653 5789999999999999
Q ss_pred e
Q 001330 251 Q 251 (1099)
Q Consensus 251 ~ 251 (1099)
.
T Consensus 202 ~ 202 (290)
T 3lib_A 202 H 202 (290)
T ss_dssp C
T ss_pred c
Confidence 3
No 159
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=96.16 E-value=0.018 Score=60.24 Aligned_cols=77 Identities=14% Similarity=0.274 Sum_probs=55.6
Q ss_pred cccCchhhHhhhcCCCCccccccccc-c-cccceeeeeeee--C--CC--ceEEeccchHHHHHHhhhhh-ccccEEEEE
Q 001330 172 VSANASWFQEVINSTNGYSSLVTGLN-K-EEGSIFLHTFAM--D--GT--GFISLGFPAKVVIDLFAALD-FHGGDLHLA 242 (1099)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~--~--~~--~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~ 242 (1099)
++.+++||.++++++ ...|..+.. . .+...+..+.|+ + |+ |++.+.++.+.+.+.++.+. ..+|+++|.
T Consensus 88 ~~~~~~w~~~~~~~~--~~~~s~~~~~~~~~~~~i~~~~pi~~~~~g~~~Gvl~~~i~~~~l~~~~~~~~~~~~g~~~l~ 165 (240)
T 3c8c_A 88 DPRVRPWYKDAKNAG--KLVITAPYADSASGEILVSVATPVKDSATGQFLGSIFYDVSLAELAELVNEVKLFDAGYVFIV 165 (240)
T ss_dssp CGGGSHHHHHHHHHT--SCEECCCEECTTTCCEEEEEEEEEECTTTCCEEEEEEEEECHHHHHHHHTCSCCTTSEEEEEE
T ss_pred CcccChHHHHHHhcC--CcEEeeceEcCCCCeEEEEEEEEEEECCCCeEEEEEEEEEEHHHHHHHHHhcccCCceEEEEE
Confidence 567899999999643 233433322 2 233445556776 3 65 99999999999999988655 356899999
Q ss_pred cCCCcEEE
Q 001330 243 AADGQVII 250 (1099)
Q Consensus 243 ~~~G~~v~ 250 (1099)
|.+|.+|+
T Consensus 166 d~~G~ii~ 173 (240)
T 3c8c_A 166 SEDGTTIA 173 (240)
T ss_dssp ETTSBEEE
T ss_pred cCCCcEEE
Confidence 99999999
No 160
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.04 E-value=0.0051 Score=76.20 Aligned_cols=104 Identities=11% Similarity=0.048 Sum_probs=77.4
Q ss_pred HHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEE
Q 001330 976 KVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIAL 1055 (1099)
Q Consensus 976 ~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIal 1055 (1099)
+.|...|++.||+|..+.++++|+..+++ ...+++|++|++|+ +.+++++||+. +..+||+++
T Consensus 20 ~~L~~~Le~~g~~V~~a~s~~Da~~~i~~----------~~~i~avIld~d~~---~~~ll~~Ir~~----~~~iPVFl~ 82 (715)
T 3n75_A 20 RELHRALERLNFQIVYPNDRDDLLKLIEN----------NARLCGVIFDWDKY---NLELCEEISKM----NENLPLYAF 82 (715)
T ss_dssp HHHHHHHHHTTCEEECCSSHHHHHHHHHH----------CTTEEEEEEEHHHH---HHHHHHHHHHH----CTTCEEEEE
T ss_pred HHHHHHHHHCCcEEEEeCCHHHHHHHHHh----------CCCceEEEEecccc---HHHHHHHHHHh----CCCCCEEEE
Confidence 44558889999999999999999999964 24689999999996 78999999975 357999999
Q ss_pred eccCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHHh
Q 001330 1056 TAHAMAGVASKIVDAGMDFHLTKPLQ-KDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1056 Ta~~~~~~~~~~l~aG~ddyL~KPi~-~~~L~~~l~~i~~~~ 1096 (1099)
+.....++.....-.++++|+.+..+ .+.+...|.+..+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 124 (715)
T 3n75_A 83 ANTYSTLDVSLNDLRLQISFFEYALGAAEDIANKIKQTTDEY 124 (715)
T ss_dssp CCTTCCCCGGGTTSCCEEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred ecCCcccccchhhhhccCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 98865444322223578999999875 444445554444443
No 161
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.59 E-value=0.034 Score=58.43 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=56.8
Q ss_pred CccEEEEec-CCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEE------eCCCCHHHHHHHH
Q 001330 1017 PYDYIMMDC-EMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL------TKPLQKDKLLDVV 1089 (1099)
Q Consensus 1017 ~~DlIlmDi-~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL------~KPi~~~~L~~~l 1089 (1099)
..+++++++ .++.++|++ ++.|++.... .++|||++++....++..+++++|||+++ .+|+++.++.+.+
T Consensus 144 ~~~vli~~~~~~g~~~g~~-~~~i~~~~~~--~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~l 220 (237)
T 3cwo_X 144 AGEILLTSIDRDGTKSGYD-TEMIRFVRPL--TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYL 220 (237)
T ss_dssp CSEEEEEETTTTTCCSCCC-HHHHHHHGGG--CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHHH
T ss_pred CCeEEEEecCCCCcccccc-HHHHHHHHHh--cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHHH
Confidence 456899997 788888865 4444433222 36899999999999999999999999985 8999999998876
Q ss_pred HH
Q 001330 1090 KS 1091 (1099)
Q Consensus 1090 ~~ 1091 (1099)
++
T Consensus 221 ~~ 222 (237)
T 3cwo_X 221 KK 222 (237)
T ss_dssp HT
T ss_pred HH
Confidence 53
No 162
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=95.51 E-value=0.032 Score=64.16 Aligned_cols=51 Identities=22% Similarity=0.447 Sum_probs=35.2
Q ss_pred EEEEEeCCCCCCcccH--------hhhccccccccc---cCCCCCCC-ccccHHHHHHHHHhc
Q 001330 591 EFEVDDTGKGIPKDKQ--------NSIFEEFVQVKE---TALGHQEG-LGLGLGIVQSMVHLM 641 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l--------~~IFe~F~q~d~---s~~~~~~G-tGLGLaIvk~lVe~~ 641 (1099)
.|+|.|+|+|||.+.. +-+|..+....+ .....++| .|.||+.+..+.+.+
T Consensus 67 ~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~~l 129 (391)
T 1ei1_A 67 SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL 129 (391)
T ss_dssp CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEE
T ss_pred EEEEEECCCCcccCcccccCcchHHHhheeccccCCcCCCcccccCCccccchHHHHHhcCeE
Confidence 3899999999999984 458886554321 11122334 799999998887644
No 163
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=95.27 E-value=0.08 Score=51.41 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=78.6
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCce-EEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIK-VTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDT 785 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~-v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 785 (1099)
..-+|+++++++..|..++.+++. .|+. +..+.++.+....+++.
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~-~G~~~v~~a~~g~~al~~~~~~--------------------------------- 56 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRD-LGFNNTQEADDGLTALPMLKKG--------------------------------- 56 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHH-TTCCCEEEESSHHHHHHHHHHH---------------------------------
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHH-cCCcEEEEECCHHHHHHHHHhC---------------------------------
Confidence 345799999999999999999998 7875 66677776554433321
Q ss_pred CCcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccc
Q 001330 786 GHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREY 865 (1099)
Q Consensus 786 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 865 (1099)
.+.++++|...+.. +..+.++..+........+++.+..... .+....
T Consensus 57 -----------------------------~~DlillD~~MP~m-dG~el~~~ir~~~~~~~ipvI~lTa~~~--~~~~~~ 104 (134)
T 3to5_A 57 -----------------------------DFDFVVTDWNMPGM-QGIDLLKNIRADEELKHLPVLMITAEAK--REQIIE 104 (134)
T ss_dssp -----------------------------CCSEEEEESCCSSS-CHHHHHHHHHHSTTTTTCCEEEEESSCC--HHHHHH
T ss_pred -----------------------------CCCEEEEcCCCCCC-CHHHHHHHHHhCCCCCCCeEEEEECCCC--HHHHHH
Confidence 24566777765443 3445555555544334455665544322 122334
Q ss_pred cccCccccccccCCCcchHHHHHhhc
Q 001330 866 RLLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 866 ~~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
....|.+.++.||+....|...++.+
T Consensus 105 ~~~~Ga~~yl~KP~~~~~L~~~i~~~ 130 (134)
T 3to5_A 105 AAQAGVNGYIVKPFTAATLKEKLDKI 130 (134)
T ss_dssp HHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred HHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 56688999999999999999888754
No 164
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=95.18 E-value=0.029 Score=59.83 Aligned_cols=74 Identities=9% Similarity=0.069 Sum_probs=55.0
Q ss_pred ccccCchhhHhhhcCCCCcccccccccc-cccceeeeeeee--CCC--ceEEeccchHHHHHHhhhhhccccEEEEEcCC
Q 001330 171 IVSANASWFQEVINSTNGYSSLVTGLNK-EEGSIFLHTFAM--DGT--GFISLGFPAKVVIDLFAALDFHGGDLHLAAAD 245 (1099)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1099)
.++.+++||++++++..+..+ ..+. .+...+..++|| +|+ |+|.+.+..+.+.+.+. ..+|+++|+|.+
T Consensus 99 ~~~~~r~~~~~a~~~~~~~~~---~~~~~~g~~~i~~~~pi~~~g~~~Gvv~~~i~l~~l~~~~~---~~~g~~~l~d~~ 172 (260)
T 3by9_A 99 RNFAWRPYFYLSIAGQKSQYF---ALGSTSGQRGYYYAYPVIYAAEILGVIVVKMDLSAIEQGWQ---NKSSYFVATDDH 172 (260)
T ss_dssp CBCTTSHHHHHHTTTSCEEEE---EECTTTCCEEEEEEEEEEETTEEEEEEEEEECSHHHHHTCC---CSSCEEEEECTT
T ss_pred CccccCHHHHHHHhCCCceEE---EEecCCCCEEEEEEEEEccCCeEEEEEEEEEeHHHHHHHHh---cCCCcEEEECCC
Confidence 357789999999986544332 2222 233456667776 565 99999999998888776 468899999999
Q ss_pred CcEEE
Q 001330 246 GQVII 250 (1099)
Q Consensus 246 G~~v~ 250 (1099)
|.+|+
T Consensus 173 G~ii~ 177 (260)
T 3by9_A 173 QVVFM 177 (260)
T ss_dssp CBEEE
T ss_pred CeEEE
Confidence 99999
No 165
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=94.94 E-value=0.0057 Score=65.58 Aligned_cols=63 Identities=13% Similarity=0.209 Sum_probs=38.7
Q ss_pred EEEEEeCCCCCCcccHhhhccccccccccC---------------CCCCCCccccHHHHHHHHHhcCCEEEEEecCCCce
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKETA---------------LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGER 655 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~---------------~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~ 655 (1099)
.|.|.|||+||+++++...|..+.+..... ...-|..|+|+.-+-.+ ..++.|.++..+..
T Consensus 80 ~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~v----a~~v~V~Sr~~~~~ 155 (236)
T 2gqp_A 80 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLV----ADKVIVTSKHNNDT 155 (236)
T ss_dssp EEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGT----EEEEEEEEECTTSC
T ss_pred EEEEEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhc----CCEEEEEEeCCCCc
Confidence 489999999999999988887664431110 00112368888644433 37888887765544
Q ss_pred eE
Q 001330 656 GV 657 (1099)
Q Consensus 656 Gt 657 (1099)
|.
T Consensus 156 ~~ 157 (236)
T 2gqp_A 156 QH 157 (236)
T ss_dssp CE
T ss_pred eE
Confidence 43
No 166
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=94.53 E-value=0.024 Score=60.22 Aligned_cols=65 Identities=12% Similarity=0.233 Sum_probs=41.6
Q ss_pred EEEEEeCCCCCCcccHhhhccccccccc----------cCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEE
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKE----------TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCF 659 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~----------s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f 659 (1099)
.|.|.|+|+||+++++..-|.+..+... .....-|-.|+||+-+-. ..-++.|.++..+..|..+
T Consensus 80 ~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~----vad~v~V~Sr~~~~~~~~w 154 (228)
T 3t0h_A 80 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL----VAEKVTVITKHNDDEQYAW 154 (228)
T ss_dssp EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECTTSCEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc----cCCEEEEEEecCCCCcEEE
Confidence 4899999999999999777765433211 111223567999985532 2347888887655445443
No 167
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=94.46 E-value=0.038 Score=61.46 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=56.0
Q ss_pred cccCchhhHhhhcCCCCcccccccccc-cccceeeeeeee--CCC--ceEEeccchHHHHHHhhhhhccccEEEEEcCCC
Q 001330 172 VSANASWFQEVINSTNGYSSLVTGLNK-EEGSIFLHTFAM--DGT--GFISLGFPAKVVIDLFAALDFHGGDLHLAAADG 246 (1099)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 246 (1099)
++.+++||++++++..+. +. ..+. .+...+..++|| +|+ |+|.+.+..+.+.+.+.. .+++++|+|.+|
T Consensus 141 d~~~R~yf~~Al~g~~~~-~~--~~~~~tg~~~i~~a~PV~~~G~viGVv~v~i~l~~l~~~~~~---~~g~~~l~D~~G 214 (305)
T 3e4o_A 141 DYAFRDYFRLAVRDGMAE-HF--AMGTVSKRPGLYISRRVDGPGGPLGVIVAKLEFDGVEADWQA---SGKPAYVTDRRG 214 (305)
T ss_dssp BCTTSHHHHHHHHHSEEE-EE--EECTTTCCEEEEEEEEEEETTEEEEEEEEEECCHHHHHHHHH---HTSCEEEECTTC
T ss_pred CccccHHHHHHHhcCCcE-EE--EEecCCCCEEEEEEEEEccCCeEEEEEEEEEcHHHHHHHHhc---CCceEEEEcCCC
Confidence 578999999999965432 22 2232 344557777887 565 999999999999988763 578999999999
Q ss_pred cEEE
Q 001330 247 QVII 250 (1099)
Q Consensus 247 ~~v~ 250 (1099)
.+++
T Consensus 215 ~ii~ 218 (305)
T 3e4o_A 215 IVLI 218 (305)
T ss_dssp BEEE
T ss_pred eEEE
Confidence 9999
No 168
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=94.41 E-value=0.058 Score=64.56 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=30.4
Q ss_pred EEEEEeCCCCCCcccHhhhccccccccc------------cCCCCCCCccccHHHHHHHH
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKE------------TALGHQEGLGLGLGIVQSMV 638 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~------------s~~~~~~GtGLGLaIvk~lV 638 (1099)
.|+|.|||+||+++++..-|....+... .....-|..|+|+.=+-.++
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~Va 134 (559)
T 1y4s_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (559)
T ss_dssp EEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHE
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhcc
Confidence 4899999999999998776655432210 11122356799986555543
No 169
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=94.23 E-value=0.37 Score=43.42 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=80.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
+.||+|-.|...--.+++++....|.+++...-.+ +...|+|++...+-. +.|+..
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~~-----------------e~~AdlIfCEYlLLP-------e~ifS~ 68 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQ-----------------ELSADLVVCEYSLLP-------REIRSP 68 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCCC-----------------CTTEEEEEEEGGGSC-------TTCCCC
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccccCC-----------------cccceeEEEeeecCh-------HHhcCC
Confidence 57999999999888899999888888887653222 346799999976422 124321
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
+.....-+|++-.-=+.+...+.++.|+. ||..|+++.-|.++|+..++..
T Consensus 69 --k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 69 --KSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp --TTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred --CCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 11122346666666678889999999999 9999999999999999998753
No 170
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=92.97 E-value=2.4 Score=42.21 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=83.5
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-C-CH
Q 001330 962 GKKFLVV----EDDAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-M-NG 1032 (1099)
Q Consensus 962 ~~~ILvV----dDd~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-m-dG 1032 (1099)
..+|++. |-+..-..++..+|+..||+|... ...++.++.+.+ ..+|+|.+-..|.. + .-
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~-----------~~~diV~lS~~~~~~~~~~ 86 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQ-----------EDVDVIGVSILNGAHLHLM 86 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHH-----------TTCSEEEEEESSSCHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh-----------cCCCEEEEEeechhhHHHH
Confidence 4578888 778888899999999999999853 456677776643 47999999988763 1 12
Q ss_pred HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
-++++.+|+... .+++|+ +.+....++...+.+.|+|.+...--+..+..+.++++++..
T Consensus 87 ~~~i~~L~~~g~---~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 87 KRLMAKLRELGA---DDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HHHHHHHHHTTC---TTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC---CCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 345566665321 246655 556666666667889999987765556667777777766543
No 171
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=92.94 E-value=0.11 Score=63.29 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=18.3
Q ss_pred EEEEEeCCCCCCcccHhhhccc
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEE 612 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~ 612 (1099)
.|+|.|||+||+++++..-|..
T Consensus 74 ~I~I~DnGiGMt~edl~~~l~t 95 (677)
T 2cg9_A 74 VLEIRDSGIGMTKAELINNLGT 95 (677)
T ss_dssp EEEEEECSCCCCHHHHHGGGSS
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999998765543
No 172
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=92.65 E-value=0.43 Score=50.66 Aligned_cols=117 Identities=10% Similarity=0.141 Sum_probs=74.0
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
..+|+++++++..+..+..+++. .|+.+..+.+.......+...
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~~~~~----------------------------------- 66 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKF-QGFEVYTATNGAQALDRARET----------------------------------- 66 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHH-----------------------------------
T ss_pred CceEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHhC-----------------------------------
Confidence 35788999999999999999987 799988887776655444322
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
.+.++++|...+.. +..+.++.++...+ .++++.+..... ........
T Consensus 67 ---------------------------~~dlvllD~~lp~~-~g~~~~~~lr~~~~--~~~ii~lt~~~~--~~~~~~~~ 114 (250)
T 3r0j_A 67 ---------------------------RPDAVILDVXMPGM-DGFGVLRRLRADGI--DAPALFLTARDS--LQDKIAGL 114 (250)
T ss_dssp ---------------------------CCSEEEEESCCSSS-CHHHHHHHHHHTTC--CCCEEEEECSTT--HHHHHHHH
T ss_pred ---------------------------CCCEEEEeCCCCCC-CHHHHHHHHHhcCC--CCCEEEEECCCC--HHHHHHHH
Confidence 12455666554332 22334444444333 234444433221 12223456
Q ss_pred cCccccccccCCCcchHHHHHhhcc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
..+.+.++.||+....|...++.+.
T Consensus 115 ~~Ga~~yl~Kp~~~~~L~~~i~~~~ 139 (250)
T 3r0j_A 115 TLGGDDYVTKPFSLEEVVARLRVIL 139 (250)
T ss_dssp TSTTCEEEESSCCHHHHHHHHHHHH
T ss_pred HcCCcEEEeCCCCHHHHHHHHHHHH
Confidence 6888999999999999988887553
No 173
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=92.56 E-value=0.21 Score=51.96 Aligned_cols=49 Identities=27% Similarity=0.449 Sum_probs=23.7
Q ss_pred EEEEEeCCCCCCcccH--------hhh-cccccccccc--CCCCCCC-ccccHHHHHHHHH
Q 001330 591 EFEVDDTGKGIPKDKQ--------NSI-FEEFVQVKET--ALGHQEG-LGLGLGIVQSMVH 639 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l--------~~I-Fe~F~q~d~s--~~~~~~G-tGLGLaIvk~lVe 639 (1099)
.|+|.|+|.|||.++. +.+ +.+....+-. .....+| -|.||+-+-.+.+
T Consensus 50 ~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssinalS~ 110 (201)
T 3fv5_A 50 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 110 (201)
T ss_dssp CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC---------------------CHHHHHTEE
T ss_pred EEEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccccCcccceecchhhcccc
Confidence 3899999999999984 343 4444332211 0011223 5889998877764
No 174
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=92.49 E-value=0.075 Score=64.44 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=29.2
Q ss_pred EEEEEeCCCCCCcccHhhhccccccccc------------cCCCCCCCccccHHHHHHHH
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKE------------TALGHQEGLGLGLGIVQSMV 638 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~------------s~~~~~~GtGLGLaIvk~lV 638 (1099)
.|+|.|||+||+++++..-|....+... .....-|..|+|+.=+-.++
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~Va 134 (624)
T 2ioq_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (624)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHE
T ss_pred EEEEEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcC
Confidence 4899999999999997766554322210 01111234589987665554
No 175
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=92.47 E-value=0.13 Score=56.06 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=33.7
Q ss_pred EEEEEeCCCCCCcccHhhhcc----c----cc---cccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCC
Q 001330 591 EFEVDDTGKGIPKDKQNSIFE----E----FV---QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe----~----F~---q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~g 653 (1099)
.|.|.|||+||+++++..-+. . |. +.+......-|-.|+|+.=|-. .+-++.|.++..+
T Consensus 94 tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~----vadkV~V~Sk~~~ 163 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL----VADKVIVYTKNND 163 (281)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG----TEEEEEEEEECTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc----ccCEEEEEEecCC
Confidence 489999999999999764332 1 11 1101112234678899865433 2344666555443
No 176
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=92.06 E-value=0.074 Score=57.27 Aligned_cols=64 Identities=13% Similarity=0.217 Sum_probs=39.1
Q ss_pred EEEEEeCCCCCCcccHhhhccccccccc----------cCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEE
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKE----------TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVC 658 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~----------s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~ 658 (1099)
.|.|.|||+||+++++..-|.+..+... .....-|-.|+||+-+-. ..-++.|.++..+..|..
T Consensus 108 ~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~----Vadkv~V~Sr~~~~~g~~ 181 (256)
T 3o0i_A 108 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL----VAEKVTVITKHNDDEQYA 181 (256)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECTTSCEEE
T ss_pred EEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhc----cCCeEEEEEcCCCCceEE
Confidence 5899999999999998765543222100 111223567899986532 233788877765444443
No 177
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=91.55 E-value=0.087 Score=64.17 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=18.4
Q ss_pred EEEEEeCCCCCCcccHhhhccc
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEE 612 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~ 612 (1099)
.|+|.|||+||+++++..-|..
T Consensus 93 ~I~I~DnGiGMt~edl~~~l~t 114 (666)
T 2o1u_A 93 LLHVTDTGVGMTREELVKNLGT 114 (666)
T ss_dssp EEEEEECSCCCCHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhh
Confidence 4889999999999998766644
No 178
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=91.45 E-value=0.73 Score=44.85 Aligned_cols=118 Identities=8% Similarity=0.109 Sum_probs=71.5
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEE-EecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVT-IVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
..+|++++++...+..+..++.. .|+.+. .+.+.......+.+..
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~~al~~l~~~~--------------------------------- 81 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTS-EGFNIIDTAADGEEAVIKYKNHY--------------------------------- 81 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHG---------------------------------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHhcC---------------------------------
Confidence 35788888999999999999988 688877 7777766555444320
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
+.+.++++|...... +..++++.++...+. ++++.+..... .......
T Consensus 82 ---------------------------~~~dliilD~~l~~~-~g~~~~~~lr~~~~~--~~ii~ls~~~~--~~~~~~~ 129 (157)
T 3hzh_A 82 ---------------------------PNIDIVTLXITMPKM-DGITCLSNIMEFDKN--ARVIMISALGK--EQLVKDC 129 (157)
T ss_dssp ---------------------------GGCCEEEECSSCSSS-CHHHHHHHHHHHCTT--CCEEEEESCCC--HHHHHHH
T ss_pred ---------------------------CCCCEEEEeccCCCc-cHHHHHHHHHhhCCC--CcEEEEeccCc--HHHHHHH
Confidence 013456666554322 122333333333333 33444433211 1122234
Q ss_pred ccCccccccccCCCcchHHHHHhhc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
...+.+.++.||+....|...+..+
T Consensus 130 ~~~g~~~~l~KP~~~~~l~~~i~~~ 154 (157)
T 3hzh_A 130 LIKGAKTFIVKPLDRAKVLQRVMSV 154 (157)
T ss_dssp HHTTCSEEEESSCCHHHHHHHHHHT
T ss_pred HHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 5577889999999999999888754
No 179
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=90.40 E-value=0.36 Score=54.97 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=15.6
Q ss_pred cHHHHHHHHHHHHHhHhhc
Q 001330 510 DRVKLKQILCNLVSNSMKF 528 (1099)
Q Consensus 510 D~~rL~QIL~NLL~NAiKf 528 (1099)
|+..+..++.-|++||+..
T Consensus 27 ~~~gl~~~v~ElvdNsiDe 45 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEE 45 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhhhHhH
Confidence 6667888888888888885
No 180
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=90.34 E-value=0.4 Score=50.50 Aligned_cols=50 Identities=20% Similarity=0.362 Sum_probs=28.4
Q ss_pred EEEEeCCCCCCcccH--------hhhccccccc---cc-cCCCCCCCccccHHHHHHHHHhc
Q 001330 592 FEVDDTGKGIPKDKQ--------NSIFEEFVQV---KE-TALGHQEGLGLGLGIVQSMVHLM 641 (1099)
Q Consensus 592 i~V~DtG~GI~~e~l--------~~IFe~F~q~---d~-s~~~~~~GtGLGLaIvk~lVe~~ 641 (1099)
|+|.|+|.|||.+.. +-+|-...-. +. .-....|=.|.||+.|..+-+.+
T Consensus 69 i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~~l 130 (220)
T 4duh_A 69 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL 130 (220)
T ss_dssp EEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHHHTEEEE
T ss_pred EEEEECCcCcccccccccCcchhhheeeecccCCCcCCCccccccCccceecchhcccccce
Confidence 899999999999975 3455321111 11 11111223689999888876544
No 181
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=89.87 E-value=1.1 Score=41.51 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=71.6
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.+++++++++..+..+..+++. .|+.+..+.+.......++.
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~-~g~~v~~~~~~~~al~~l~~------------------------------------- 44 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKK-EGYEVIEAENGQIALEKLSE------------------------------------- 44 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHTT-------------------------------------
T ss_pred ceEEEEeCCHHHHHHHHHHHHH-CCcEEEEeCCHHHHHHHHHh-------------------------------------
Confidence 3688888888899999999987 78888887776644332210
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
..+.++++|...+.. +..+.++.++........+++.+..... .........
T Consensus 45 -------------------------~~~dlvllD~~~p~~-~g~~~~~~l~~~~~~~~~pii~~s~~~~--~~~~~~~~~ 96 (122)
T 3gl9_A 45 -------------------------FTPDLIVLXIMMPVM-DGFTVLKKLQEKEEWKRIPVIVLTAKGG--EEDESLALS 96 (122)
T ss_dssp -------------------------BCCSEEEECSCCSSS-CHHHHHHHHHTSTTTTTSCEEEEESCCS--HHHHHHHHH
T ss_pred -------------------------cCCCEEEEeccCCCC-cHHHHHHHHHhcccccCCCEEEEecCCc--hHHHHHHHh
Confidence 012456666554332 2334444444433223445555443221 122234556
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.|.+.++.||+....|...++.+
T Consensus 97 ~Ga~~~l~KP~~~~~L~~~i~~~ 119 (122)
T 3gl9_A 97 LGARKVMRKPFSPSQFIEEVKHL 119 (122)
T ss_dssp TTCSEEEESSCCHHHHHHHHHHH
T ss_pred cChhhhccCCCCHHHHHHHHHHH
Confidence 78899999999999998887643
No 182
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=89.83 E-value=1.2 Score=41.19 Aligned_cols=116 Identities=12% Similarity=0.163 Sum_probs=72.3
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.++++++++...+..+..++.. .|..+..+.+.......+.+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l~~~------------------------------------ 46 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEM-LGFQADYVMSGTDALHAMSTR------------------------------------ 46 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHH-TTEEEEEESSHHHHHHHHHHS------------------------------------
T ss_pred ceEEEEcCCHHHHHHHHHHHHH-cCCCEEEECCHHHHHHHHHhc------------------------------------
Confidence 3688888888999999999988 788888888776554444321
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...... +..++++.++.......++++.+........ .....
T Consensus 47 --------------------------~~dlii~D~~l~~~-~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~---~~~~~ 96 (127)
T 3i42_A 47 --------------------------GYDAVFIDLNLPDT-SGLALVKQLRALPMEKTSKFVAVSGFAKNDL---GKEAC 96 (127)
T ss_dssp --------------------------CCSEEEEESBCSSS-BHHHHHHHHHHSCCSSCCEEEEEECC-CTTC---CHHHH
T ss_pred --------------------------CCCEEEEeCCCCCC-CHHHHHHHHHhhhccCCCCEEEEECCcchhH---HHHHH
Confidence 12455666544322 2234444444443334455665544322211 23445
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.+.+.++.||+....|.+.+...
T Consensus 97 ~g~~~~l~KP~~~~~L~~~i~~~ 119 (127)
T 3i42_A 97 ELFDFYLEKPIDIASLEPILQSI 119 (127)
T ss_dssp HHCSEEEESSCCHHHHHHHHHHH
T ss_pred HhhHHheeCCCCHHHHHHHHHHh
Confidence 66788999999999999888754
No 183
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=89.60 E-value=1.6 Score=40.62 Aligned_cols=118 Identities=9% Similarity=0.196 Sum_probs=72.3
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
.+.+|+++++++..+..+..++.. .|..+..+.+.......+...
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l~~~---------------------------------- 49 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKR-DHWQVEIAHNGFDAGIKLSTF---------------------------------- 49 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHT----------------------------------
T ss_pred CCccEEEEECCHHHHHHHHHHHHH-CCcEEEEeCCHHHHHHHHHhc----------------------------------
Confidence 345788899999999999999988 888888888776554444321
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
.+.++++|...... +..++++.++...+.....++.+...... .....
T Consensus 50 ----------------------------~~dlii~d~~l~~~-~g~~~~~~l~~~~~~~~~~ii~~~~~~~~---~~~~~ 97 (132)
T 3lte_A 50 ----------------------------EPAIMTLDLSMPKL-DGLDVIRSLRQNKVANQPKILVVSGLDKA---KLQQA 97 (132)
T ss_dssp ----------------------------CCSEEEEESCBTTB-CHHHHHHHHHTTTCSSCCEEEEECCSCSH---HHHHH
T ss_pred ----------------------------CCCEEEEecCCCCC-CHHHHHHHHHhcCccCCCeEEEEeCCChH---HHHHH
Confidence 12345555554332 22334444444333223344444332211 12234
Q ss_pred ccCccccccccCCCcchHHHHHhhc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
...+.+.++.||+....|...++..
T Consensus 98 ~~~g~~~~l~kP~~~~~l~~~i~~~ 122 (132)
T 3lte_A 98 VTEGADDYLEKPFDNDALLDRIHDL 122 (132)
T ss_dssp HHHTCCEEECSSCCHHHHHHHHHHH
T ss_pred HHhChHHHhhCCCCHHHHHHHHHHH
Confidence 4567889999999999999888754
No 184
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=89.13 E-value=2.2 Score=38.15 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=31.4
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHH
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQEL 749 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l 749 (1099)
.+++++.++...+..+...+.. .|..+..+.+.......+
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~l 41 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTA-AGFKVIWLVDGSTALDQL 41 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHH-TTCEEEEESCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHh-CCcEEEEecCHHHHHHHH
Confidence 4688888888899999999987 788888877766554444
No 185
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=88.93 E-value=1.9 Score=39.46 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=71.0
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.+++++.++...+..+...+.. .|+.+..+.+.......+...
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~~~~~------------------------------------ 48 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEG-RGFTVDETTDGKGSVEQIRRD------------------------------------ 48 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-HTCEEEEECCHHHHHHHHHHH------------------------------------
T ss_pred CeEEEEeCCHHHHHHHHHHHHh-cCceEEEecCHHHHHHHHHhc------------------------------------
Confidence 4688888888899999999988 788888887776555444322
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCC-ChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAG-SVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~-~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
.+.++++|.... .. +..+.++.++.......++++.+ .... ........
T Consensus 49 --------------------------~~dlvi~d~~~~~~~-~g~~~~~~l~~~~~~~~~~ii~~-~~~~--~~~~~~~~ 98 (127)
T 2gkg_A 49 --------------------------RPDLVVLAVDLSAGQ-NGYLICGKLKKDDDLKNVPIVII-GNPD--GFAQHRKL 98 (127)
T ss_dssp --------------------------CCSEEEEESBCGGGC-BHHHHHHHHHHSTTTTTSCEEEE-ECGG--GHHHHHHS
T ss_pred --------------------------CCCEEEEeCCCCCCC-CHHHHHHHHhcCccccCCCEEEE-ecCC--chhHHHHH
Confidence 123455555433 11 12233444444322233455555 3221 11222445
Q ss_pred cCccccccccCCCcchHHHHHhhc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
..+.+.++.||+....|...++.+
T Consensus 99 ~~g~~~~l~kp~~~~~l~~~i~~~ 122 (127)
T 2gkg_A 99 KAHADEYVAKPVDADQLVERAGAL 122 (127)
T ss_dssp TTCCSEEEESSCCHHHHHHHHHHH
T ss_pred HhCcchheeCCCCHHHHHHHHHHH
Confidence 678889999999999998888654
No 186
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=88.82 E-value=2.3 Score=39.96 Aligned_cols=119 Identities=12% Similarity=0.180 Sum_probs=74.5
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
..++++++++...+..+..++.. .|+.+..+.+.......+...
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~-~g~~v~~~~~~~~a~~~l~~~----------------------------------- 49 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEK-GGFDSDMVHSAAQALEQVARR----------------------------------- 49 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHH-TTCEEEEECSHHHHHHHHHHS-----------------------------------
T ss_pred CCCEEEEcCCHHHHHHHHHHHHH-CCCeEEEECCHHHHHHHHHhC-----------------------------------
Confidence 35788899999999999999988 888888888776555444321
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccc-cc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSRE-YR 866 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~ 866 (1099)
.+.++++|...... +..++++.++.......++++.+...... .... ..
T Consensus 50 ---------------------------~~dlvi~d~~l~~~-~g~~~~~~l~~~~~~~~~~ii~~s~~~~~--~~~~~~~ 99 (140)
T 3grc_A 50 ---------------------------PYAAMTVDLNLPDQ-DGVSLIRALRRDSRTRDLAIVVVSANARE--GELEFNS 99 (140)
T ss_dssp ---------------------------CCSEEEECSCCSSS-CHHHHHHHHHTSGGGTTCEEEEECTTHHH--HHHHHCC
T ss_pred ---------------------------CCCEEEEeCCCCCC-CHHHHHHHHHhCcccCCCCEEEEecCCCh--HHHHHHh
Confidence 12455566544322 22334444444222234556655443221 1111 34
Q ss_pred ccCccccccccCCCcchHHHHHhhcc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
...+.+.++.||+....|...+..+.
T Consensus 100 ~~~g~~~~l~kP~~~~~l~~~i~~~l 125 (140)
T 3grc_A 100 QPLAVSTWLEKPIDENLLILSLHRAI 125 (140)
T ss_dssp TTTCCCEEECSSCCHHHHHHHHHHHH
T ss_pred hhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 56788999999999999998887553
No 187
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=88.70 E-value=0.49 Score=50.06 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=30.1
Q ss_pred EEEEeCCCCCCccc-------Hhhhccccccc-c--c-cCCCCCCCccccHHHHHHHHHhc
Q 001330 592 FEVDDTGKGIPKDK-------QNSIFEEFVQV-K--E-TALGHQEGLGLGLGIVQSMVHLM 641 (1099)
Q Consensus 592 i~V~DtG~GI~~e~-------l~~IFe~F~q~-d--~-s~~~~~~GtGLGLaIvk~lVe~~ 641 (1099)
|+|.|+|.|||.+. .+-+|-..... + . +-....|=.|.|++.|-.+-+.+
T Consensus 74 i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~~l 134 (226)
T 4emv_A 74 LTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSWL 134 (226)
T ss_dssp EEEEECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHHHHTEEEE
T ss_pred EEEEEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccchhhhhcccce
Confidence 89999999999998 66677422211 1 1 11111233689999888776544
No 188
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=88.25 E-value=2.7 Score=38.99 Aligned_cols=116 Identities=12% Similarity=0.141 Sum_probs=70.9
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.++++++++...+..+...+. .|..+..+.+.......+.+.
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~--~~~~v~~~~~~~~a~~~l~~~------------------------------------ 46 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS--GEFDCTTAADGASGLQQALAH------------------------------------ 46 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT--TTSEEEEESSHHHHHHHHHHS------------------------------------
T ss_pred CEEEEEcCCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHhcC------------------------------------
Confidence 468888888888999988887 678888887776554443321
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...... +..++++.++.......++++.+..... ... .....
T Consensus 47 --------------------------~~dlvi~d~~l~~~-~g~~~~~~l~~~~~~~~~pii~~s~~~~--~~~-~~~~~ 96 (133)
T 3nhm_A 47 --------------------------PPDVLISDVNMDGM-DGYALCGHFRSEPTLKHIPVIFVSGYAP--RTE-GPADQ 96 (133)
T ss_dssp --------------------------CCSEEEECSSCSSS-CHHHHHHHHHHSTTTTTCCEEEEESCCC--------TTS
T ss_pred --------------------------CCCEEEEeCCCCCC-CHHHHHHHHHhCCccCCCCEEEEeCCCc--HhH-HHHhh
Confidence 12455666554321 2233444444443323445555544321 112 34556
Q ss_pred CccccccccCCCcchHHHHHhhcc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
.+.+.++.||+....|...++.+.
T Consensus 97 ~g~~~~l~KP~~~~~l~~~i~~~l 120 (133)
T 3nhm_A 97 PVPDAYLVKPVKPPVLIAQLHALL 120 (133)
T ss_dssp CCCSEEEESSCCHHHHHHHHHHHH
T ss_pred cCCceEEeccCCHHHHHHHHHHHH
Confidence 788899999999999999887654
No 189
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=88.14 E-value=2.9 Score=44.72 Aligned_cols=104 Identities=15% Similarity=0.082 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHhhcCCeEE--EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC-----HHHHHHHHhcc
Q 001330 970 DDAIVLKVTSAVLGKLGAKFE--VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN-----GWEATRLIRKE 1042 (1099)
Q Consensus 970 Dd~~~~~~l~~~L~~~G~~v~--~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md-----G~e~~r~IR~~ 1042 (1099)
|.....+. .+.|.+.||.|. ++.|...|-++.. ..+++| |.+-.|... -+++++.|++.
T Consensus 120 D~~~tv~a-a~~L~~~Gf~Vlpy~~dd~~~akrl~~------------~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~ 185 (265)
T 1wv2_A 120 NVVETLKA-AEQLVKDGFDVMVYTSDDPIIARQLAE------------IGCIAV-MPLAGLIGSGLGICNPYNLRIILEE 185 (265)
T ss_dssp CHHHHHHH-HHHHHTTTCEEEEEECSCHHHHHHHHH------------SCCSEE-EECSSSTTCCCCCSCHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHHCCCEEEEEeCCCHHHHHHHHH------------hCCCEE-EeCCccCCCCCCcCCHHHHHHHHhc
Confidence 33334443 455667799977 5566666644431 256776 776666332 37889999863
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL-----TKPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL-----~KPi~~~~L~~~l~~i 1092 (1099)
.++|||+=.+-..+++...+++.|+|+.+ +|--++..+...+...
T Consensus 186 -----~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~A 235 (265)
T 1wv2_A 186 -----AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHA 235 (265)
T ss_dssp -----CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred -----CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHH
Confidence 35899987788899999999999999985 4544566555555443
No 190
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=88.13 E-value=0.84 Score=49.94 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=34.7
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEE-EecchhhHHHHHH
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVT-IVKQEKNLHQELR 750 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~-~~~~~~~~~~~l~ 750 (1099)
+.+++++++++..+..+...++. .|+.+. .+.++.+....+.
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~-~g~~v~~~a~~g~eAl~~~~ 202 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRE-LGHDVTDIAATRGEALEAVT 202 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHH
T ss_pred CCcEEEEcCCHHHHHHHHHHhhc-cCceEEEEeCCHHHHHHHHH
Confidence 45788999999999999999998 899998 8888876655444
No 191
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=88.06 E-value=2.6 Score=39.55 Aligned_cols=119 Identities=12% Similarity=0.154 Sum_probs=73.7
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
...++++++++...+..+...+.. .|+.+..+.+.......++..
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l~~~---------------------------------- 50 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSD-AGFHIISADSGGQCIDLLKKG---------------------------------- 50 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHTC----------------------------------
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHH-CCeEEEEeCCHHHHHHHHHhc----------------------------------
Confidence 345788898999999999999988 688888877766544333210
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
.+.++++|...... +..+.++.++.......++++.+..... .......
T Consensus 51 ----------------------------~~dlii~d~~l~~~-~g~~~~~~l~~~~~~~~~pii~~s~~~~--~~~~~~~ 99 (142)
T 3cg4_A 51 ----------------------------FSGVVLLDIMMPGM-DGWDTIRAILDNSLEQGIAIVMLTAKNA--PDAKMIG 99 (142)
T ss_dssp ----------------------------CCEEEEEESCCSSS-CHHHHHHHHHHTTCCTTEEEEEEECTTC--CCCSSTT
T ss_pred ----------------------------CCCEEEEeCCCCCC-CHHHHHHHHHhhcccCCCCEEEEECCCC--HHHHHHH
Confidence 13566666654332 1223344444422223455665544322 1222344
Q ss_pred ccCccccccccCCCcchHHHHHhhc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
...+.+.++.||+....|...++.+
T Consensus 100 ~~~g~~~~l~kp~~~~~l~~~i~~~ 124 (142)
T 3cg4_A 100 LQEYVVDYITKPFDNEDLIEKTTFF 124 (142)
T ss_dssp GGGGEEEEEESSCCHHHHHHHHHHH
T ss_pred HhcCccEEEeCCCCHHHHHHHHHHH
Confidence 5568889999999999998888754
No 192
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=87.96 E-value=0.74 Score=52.89 Aligned_cols=51 Identities=18% Similarity=0.250 Sum_probs=31.6
Q ss_pred EEEEEeCCCCCCccc--------Hhhhccc-ccccc---ccCCCCCCCccccHHHHHHHHHhc
Q 001330 591 EFEVDDTGKGIPKDK--------QNSIFEE-FVQVK---ETALGHQEGLGLGLGIVQSMVHLM 641 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~--------l~~IFe~-F~q~d---~s~~~~~~GtGLGLaIvk~lVe~~ 641 (1099)
.|+|.|+|.|||.+. .+-+|.. ....+ ..-.-..|=.|.||+.|-.+-+.+
T Consensus 87 ~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS~~l 149 (400)
T 1zxm_A 87 LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKF 149 (400)
T ss_dssp EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTEEEE
T ss_pred EEEEEECCCcccCccccccCccchhheeeeecccCCCCCCcccccCCccccceeeeEEeccce
Confidence 489999999999987 4456662 21111 111112234799999888775443
No 193
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=86.75 E-value=2 Score=40.51 Aligned_cols=117 Identities=8% Similarity=0.102 Sum_probs=70.5
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.++++++++...+..+..+++. .|+.+..+.+.......+...
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~~~~~------------------------------------ 47 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRG-AGYEVRRAASGEEALQQIYKN------------------------------------ 47 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHS------------------------------------
T ss_pred CEEEEEeCCHHHHHHHHHHHHH-CCCEEEEeCCHHHHHHHHHhC------------------------------------
Confidence 4688888888899999999987 789888887776554433221
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+.. +..+.++.++........+++.+...... ........
T Consensus 48 --------------------------~~dlvl~D~~lp~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~--~~~~~~~~ 98 (136)
T 3t6k_A 48 --------------------------LPDALICDVLLPGI-DGYTLCKRVRQHPLTKTLPILMLTAQGDI--SAKIAGFE 98 (136)
T ss_dssp --------------------------CCSEEEEESCCSSS-CHHHHHHHHHHSGGGTTCCEEEEECTTCH--HHHHHHHH
T ss_pred --------------------------CCCEEEEeCCCCCC-CHHHHHHHHHcCCCcCCccEEEEecCCCH--HHHHHHHh
Confidence 12345555554322 12233333333222223345544432211 11223445
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.|.+.++.||+....|...++.+
T Consensus 99 ~ga~~~l~KP~~~~~L~~~i~~~ 121 (136)
T 3t6k_A 99 AGANDYLAKPFEPQELVYRVKNI 121 (136)
T ss_dssp HTCSEEEETTCCHHHHHHHHHHH
T ss_pred cCcceEEeCCCCHHHHHHHHHHH
Confidence 67888999999999999888754
No 194
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=86.74 E-value=0.76 Score=43.74 Aligned_cols=40 Identities=5% Similarity=0.025 Sum_probs=30.6
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEE-EecchhhHHHH
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVT-IVKQEKNLHQE 748 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~-~~~~~~~~~~~ 748 (1099)
.-+|+++++++..+..++.+++. .|+.+. .+.+.++..+.
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~-~G~~v~~~a~~g~eAl~~ 48 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCE-LGHEVAATASRMQEALDI 48 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHH-HCCCCCBCSCCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHH
Confidence 45789999999999999999988 788764 56666654443
No 195
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=86.66 E-value=1.7 Score=40.90 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=76.1
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
..+++++++++..+..+..++....|+.+..+.+.......+.+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~------------------------------------ 47 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKD------------------------------------ 47 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTT------------------------------------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhc------------------------------------
Confidence 35788888889999999999887568888877766543211100
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
...+.++++|.......+..++++.++.......++++.+..... ........
T Consensus 48 -------------------------~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~--~~~~~~~~ 100 (140)
T 3lua_A 48 -------------------------LDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDN--PGYRHAAL 100 (140)
T ss_dssp -------------------------CCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCC--HHHHHHHH
T ss_pred -------------------------CCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCC--HHHHHHHH
Confidence 012467778876652344555666666522223344555443221 11222345
Q ss_pred cCccccccccCCCcchHHHHHhhcc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
..+.+.++.||+....|...++.+.
T Consensus 101 ~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (140)
T 3lua_A 101 KFKVSDYILKPYPTKRLENSVRSVL 125 (140)
T ss_dssp HSCCSEEEESSCCTTHHHHHHHHHH
T ss_pred HcCCCEEEECCCCHHHHHHHHHHHH
Confidence 5788899999999999999987653
No 196
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=86.54 E-value=1.6 Score=42.07 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=72.3
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
...+|++++++...+..+..++.. .|+.+..+.+.......+..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~l~~----------------------------------- 49 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEE-TGYQTEHVRNGREAVRFLSL----------------------------------- 49 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHT-TTCEEEEESSHHHHHHHHTT-----------------------------------
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHH-CCCEEEEeCCHHHHHHHHHh-----------------------------------
Confidence 346789999999999999999998 78888887776544332211
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
..+.++++|...... +..++++.++.......++++.+..... .......
T Consensus 50 ---------------------------~~~dlii~D~~l~~~-~g~~~~~~lr~~~~~~~~pii~~s~~~~--~~~~~~~ 99 (154)
T 3gt7_A 50 ---------------------------TRPDLIISDVLMPEM-DGYALCRWLKGQPDLRTIPVILLTILSD--PRDVVRS 99 (154)
T ss_dssp ---------------------------CCCSEEEEESCCSSS-CHHHHHHHHHHSTTTTTSCEEEEECCCS--HHHHHHH
T ss_pred ---------------------------CCCCEEEEeCCCCCC-CHHHHHHHHHhCCCcCCCCEEEEECCCC--hHHHHHH
Confidence 113456666654332 2233344444332223344554433221 1122234
Q ss_pred ccCccccccccCCCcchHHHHHhhcc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
...+.+.++.||+....|...++.+.
T Consensus 100 ~~~g~~~~l~KP~~~~~l~~~i~~~l 125 (154)
T 3gt7_A 100 LECGADDFITKPCKDVVLASHVKRLL 125 (154)
T ss_dssp HHHCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 45678899999999999988887553
No 197
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=86.37 E-value=2.8 Score=39.55 Aligned_cols=114 Identities=9% Similarity=0.085 Sum_probs=70.7
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
+.+|+++++++..+..+..++.. .|+.+..+.+.......+.+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l~~------------------------------------ 47 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNK-YGYTVEIALTGEAAVEKVSG------------------------------------ 47 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHT------------------------------------
T ss_pred CcEEEEEeCCHHHHHHHHHHHHH-cCCEEEEecChHHHHHHHhc------------------------------------
Confidence 45788999999999999999998 78888887776654433321
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCC---ChHHHHHHHHhccccCCCCcceEEEeccchhccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAG---SVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSRE 864 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~---~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 864 (1099)
...+.++++|.... +.-++.+.++. . + .++++.+..... .....
T Consensus 48 -------------------------~~~~dlvi~D~~l~~~~~g~~~~~~l~~---~-~--~~~ii~ls~~~~--~~~~~ 94 (140)
T 3h5i_A 48 -------------------------GWYPDLILMDIELGEGMDGVQTALAIQQ---I-S--ELPVVFLTAHTE--PAVVE 94 (140)
T ss_dssp -------------------------TCCCSEEEEESSCSSSCCHHHHHHHHHH---H-C--CCCEEEEESSSS--CCCCG
T ss_pred -------------------------CCCCCEEEEeccCCCCCCHHHHHHHHHh---C-C--CCCEEEEECCCC--HHHHH
Confidence 01134566665542 22334444433 2 2 234554443322 12233
Q ss_pred ccccCccccccccCCCcchHHHHHhhc
Q 001330 865 YRLLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 865 ~~~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.....+.+.++.||+....|...+..+
T Consensus 95 ~~~~~g~~~~l~KP~~~~~l~~~i~~~ 121 (140)
T 3h5i_A 95 KIRSVTAYGYVMKSATEQVLITIVEMA 121 (140)
T ss_dssp GGGGSCEEEEEETTCCHHHHHHHHHHH
T ss_pred HHHhCCCcEEEeCCCCHHHHHHHHHHH
Confidence 445578899999999999999888754
No 198
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=85.61 E-value=15 Score=35.21 Aligned_cols=115 Identities=11% Similarity=0.020 Sum_probs=74.6
Q ss_pred CEEEEE----eCCHHHHHHHHHHHhhcCCeEE---EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC--HH
Q 001330 963 KKFLVV----EDDAIVLKVTSAVLGKLGAKFE---VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN--GW 1033 (1099)
Q Consensus 963 ~~ILvV----dDd~~~~~~l~~~L~~~G~~v~---~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md--G~ 1033 (1099)
.+|++. |-+..-..++..+|+..||+|. .....++.++.+.+ ..+|+|.+-..|..-. --
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~-----------~~~d~v~lS~~~~~~~~~~~ 72 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIE-----------TKADAILVSSLYGQGEIDCK 72 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHH-----------HTCSEEEEEECSSTHHHHHT
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh-----------cCCCEEEEEecCcCcHHHHH
Confidence 356554 4455667788899999999988 34677787777754 2689999998885321 22
Q ss_pred HHHHHHhccccccCCCccEEEEeccC-----C-HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 001330 1034 EATRLIRKEEEQYDVHIPIIALTAHA-----M-AGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1034 e~~r~IR~~~~~~~~~ipIIalTa~~-----~-~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i 1092 (1099)
++++.+|+... .+++|+ +.+.. + .+....+.++|+|.|..---+..+..+.+...
T Consensus 73 ~~i~~l~~~g~---~~i~v~-vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 73 GLRQKCDEAGL---EGILLY-VGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp THHHHHHHTTC---TTCEEE-EEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCC---CCCEEE-EECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 45666665321 246654 44432 1 22355688999999987666666666655543
No 199
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=85.58 E-value=3.8 Score=38.47 Aligned_cols=118 Identities=12% Similarity=0.108 Sum_probs=69.3
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.+++++++++..+..+...++. .|+.+..+.+.......+...
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~l~~~------------------------------------ 46 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLER-GGYRPITAFSGEECLEALNAT------------------------------------ 46 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHS------------------------------------
T ss_pred ceEEEEeCCHHHHHHHHHHHHH-cCceEEEeCCHHHHHHHHhcc------------------------------------
Confidence 3688888888899999999987 788888777665444333211
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|....... ..++++.++...+....+++.+..... .........
T Consensus 47 --------------------------~~dlvi~D~~l~~~~-g~~~~~~l~~~~~~~~~~ii~ls~~~~--~~~~~~~~~ 97 (138)
T 3c3m_A 47 --------------------------PPDLVLLDIMMEPMD-GWETLERIKTDPATRDIPVLMLTAKPL--TPEEANEYG 97 (138)
T ss_dssp --------------------------CCSEEEEESCCSSSC-HHHHHHHHHHSTTTTTSCEEEEESSCC--CHHHHHHTT
T ss_pred --------------------------CCCEEEEeCCCCCCC-HHHHHHHHHcCcccCCCCEEEEECCCC--hHHHHHHhh
Confidence 124555665543221 223344444332223445555543321 111122333
Q ss_pred CccccccccCCCcchHHHHHhhcc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
.+.+.++.||+....|...++.+.
T Consensus 98 ~~~~~~l~KP~~~~~L~~~i~~~~ 121 (138)
T 3c3m_A 98 SYIEDYILKPTTHHQLYEAIEHVL 121 (138)
T ss_dssp TTCSEEEECCCHHHHHHHHHHHHH
T ss_pred cCHhheEeCCCCHHHHHHHHHHHH
Confidence 456789999999999988887543
No 200
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=85.23 E-value=4.9 Score=36.55 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=67.3
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.+++++++++..+..+...+.. .|+.+..+.+.......+...
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~~~~a~~~~~~~------------------------------------ 44 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEA-QGYETLQTREGLSALSIAREN------------------------------------ 44 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESCHHHHHHHHHHH------------------------------------
T ss_pred cEEEEEcCCHHHHHHHHHHHHH-cCcEEEEeCCHHHHHHHHhcC------------------------------------
Confidence 3578888888899999999987 788887776665444333221
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+... ..+.++.++.......++++.+...... ........
T Consensus 45 --------------------------~~dlvi~D~~l~~~~-g~~~~~~l~~~~~~~~~~ii~~s~~~~~--~~~~~~~~ 95 (124)
T 1mb3_A 45 --------------------------KPDLILMDIQLPEIS-GLEVTKWLKEDDDLAHIPVVAVTAFAMK--GDEERIRE 95 (124)
T ss_dssp --------------------------CCSEEEEESBCSSSB-HHHHHHHHHHSTTTTTSCEEEEC--------CHHHHHH
T ss_pred --------------------------CCCEEEEeCCCCCCC-HHHHHHHHHcCccccCCcEEEEECCCCH--HHHHHHHh
Confidence 123455555443221 1233334433222233455555433211 11223345
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.+.+.++.||+....|...++.+
T Consensus 96 ~g~~~~l~KP~~~~~l~~~i~~~ 118 (124)
T 1mb3_A 96 GGCEAYISKPISVVHFLETIKRL 118 (124)
T ss_dssp HTCSEEECSSCCHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCHHHHHHHHHHH
Confidence 67888999999999998888654
No 201
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=84.94 E-value=2.2 Score=40.45 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=72.7
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
...++++++++...+..+...+.. .|+.+..+.+.......+...
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l~~~---------------------------------- 51 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQ-EGFDIIQCGNAIEAVPVAVKT---------------------------------- 51 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHH-HTEEEEEESSHHHHHHHHHHH----------------------------------
T ss_pred CCceEEEEeCCHHHHHHHHHHHHH-cCCeEEEeCCHHHHHHHHHcC----------------------------------
Confidence 445788888888899999999988 788888887776655444322
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
.+.++++|...... +..++++.++.......++++.+..... .......
T Consensus 52 ----------------------------~~dlii~d~~l~~~-~g~~~~~~l~~~~~~~~~pii~ls~~~~--~~~~~~~ 100 (147)
T 2zay_A 52 ----------------------------HPHLIITEANMPKI-SGMDLFNSLKKNPQTASIPVIALSGRAT--AKEEAQL 100 (147)
T ss_dssp ----------------------------CCSEEEEESCCSSS-CHHHHHHHHHTSTTTTTSCEEEEESSCC--HHHHHHH
T ss_pred ----------------------------CCCEEEEcCCCCCC-CHHHHHHHHHcCcccCCCCEEEEeCCCC--HHHHHHH
Confidence 12455566544322 1233444444422223445555543221 1112233
Q ss_pred ccCccccccccCCCcchHHHHHhhc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
...+.+.++.||+....|...+..+
T Consensus 101 ~~~g~~~~l~kp~~~~~L~~~i~~~ 125 (147)
T 2zay_A 101 LDMGFIDFIAKPVNAIRLSARIKRV 125 (147)
T ss_dssp HHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred HhCCCCEEEeCCCCHHHHHHHHHHH
Confidence 4567888999999999998888754
No 202
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=84.80 E-value=0.35 Score=51.47 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=34.5
Q ss_pred EEEEEeCCCCCCcccHhhhcc--------cccc---ccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCC
Q 001330 591 EFEVDDTGKGIPKDKQNSIFE--------EFVQ---VKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe--------~F~q---~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~g 653 (1099)
.|.|.|||+||+++++..-+. .|.. ... ....-|-.|+|+.-|-.+ .-++.|.++..+
T Consensus 87 ~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~-d~~~IGqFGvGfySaf~v----adkv~V~Sk~~~ 155 (239)
T 3nmq_A 87 TLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGA-DISMIGQFGVGFYSAYLV----AEKVVVITKHND 155 (239)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTC-CGGGGGGGTCGGGGGGGT----EEEEEEEEECTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccC-CcccccccCccccccccc----CCEEEEEEeeCC
Confidence 589999999999999743221 1211 111 112335789999865332 345777666543
No 203
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=84.79 E-value=1.4 Score=50.84 Aligned_cols=51 Identities=24% Similarity=0.381 Sum_probs=32.2
Q ss_pred EEEEEeCCCCCCcccHhh--------hcccccccc---c-cCCCCCCCccccHHHHHHHHHhc
Q 001330 591 EFEVDDTGKGIPKDKQNS--------IFEEFVQVK---E-TALGHQEGLGLGLGIVQSMVHLM 641 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~--------IFe~F~q~d---~-s~~~~~~GtGLGLaIvk~lVe~~ 641 (1099)
.|+|.|+|.|||.+..+. ||-...-.. . +-.-.+|=.|.|.+.|..|-+.+
T Consensus 99 sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~~l 161 (418)
T 1pvg_A 99 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEF 161 (418)
T ss_dssp EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEEE
T ss_pred EEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCceeccCCccceeeeeeeeccceE
Confidence 389999999999987543 564332211 1 11112234799999888877655
No 204
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=84.64 E-value=4.7 Score=37.47 Aligned_cols=119 Identities=8% Similarity=0.090 Sum_probs=73.5
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
..+++++++++..+..+..++.. .|+.+..+.+.......+...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~~~~~----------------------------------- 50 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKS-RGIDAVGADGAEEARLYLHYQ----------------------------------- 50 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHH-TTCCEEEESSHHHHHHHHHHC-----------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHH-cCceEEEeCCHHHHHHHHHhC-----------------------------------
Confidence 45788888889999999999988 788888877766544333221
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
..+.++++|...... +..++++.+++.. ...++++.+..... ........
T Consensus 51 --------------------------~~~dlvi~D~~l~~~-~g~~~~~~l~~~~-~~~~~ii~~s~~~~--~~~~~~~~ 100 (136)
T 3hdv_A 51 --------------------------KRIGLMITDLRMQPE-SGLDLIRTIRASE-RAALSIIVVSGDTD--VEEAVDVM 100 (136)
T ss_dssp --------------------------TTEEEEEECSCCSSS-CHHHHHHHHHTST-TTTCEEEEEESSCC--HHHHHHHH
T ss_pred --------------------------CCCcEEEEeccCCCC-CHHHHHHHHHhcC-CCCCCEEEEeCCCC--hHHHHHHH
Confidence 113566666654332 2233444444432 12344554433221 11222345
Q ss_pred cCccccccccCCCcchHHHHHhhcc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
..+.+.++.||+....|...++...
T Consensus 101 ~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (136)
T 3hdv_A 101 HLGVVDFLLKPVDLGKLLELVNKEL 125 (136)
T ss_dssp HTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred hCCcceEEeCCCCHHHHHHHHHHHh
Confidence 5788999999999999999987653
No 205
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=84.53 E-value=4 Score=38.20 Aligned_cols=121 Identities=13% Similarity=0.165 Sum_probs=73.0
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCce-EEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIK-VTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDT 785 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~-v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 785 (1099)
...++++++++...+..+..++....|+. +..+.+.......++..
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--------------------------------- 53 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTV--------------------------------- 53 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHT---------------------------------
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhc---------------------------------
Confidence 34678889999999999999988757887 77777776554443321
Q ss_pred CCcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccc
Q 001330 786 GHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREY 865 (1099)
Q Consensus 786 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 865 (1099)
.+.++++|...... +..+.++.++.......++++.+...... .....
T Consensus 54 -----------------------------~~dlii~d~~l~~~-~g~~~~~~l~~~~~~~~~~ii~~s~~~~~--~~~~~ 101 (143)
T 3cnb_A 54 -----------------------------KPDVVMLDLMMVGM-DGFSICHRIKSTPATANIIVIAMTGALTD--DNVSR 101 (143)
T ss_dssp -----------------------------CCSEEEEETTCTTS-CHHHHHHHHHTSTTTTTSEEEEEESSCCH--HHHHH
T ss_pred -----------------------------CCCEEEEecccCCC-cHHHHHHHHHhCccccCCcEEEEeCCCCH--HHHHH
Confidence 12455666544322 12234444444222234555555433211 11223
Q ss_pred cccCccccccccCCCcchHHHHHhhcc
Q 001330 866 RLLPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 866 ~~~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
....+.+.++.||+....|...++.+.
T Consensus 102 ~~~~g~~~~l~kP~~~~~l~~~i~~~~ 128 (143)
T 3cnb_A 102 IVALGAETCFGKPLNFTLLEKTIKQLV 128 (143)
T ss_dssp HHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHhcCCcEEEeCCCCHHHHHHHHHHHH
Confidence 445788899999999999998887653
No 206
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=84.38 E-value=3.4 Score=38.27 Aligned_cols=119 Identities=13% Similarity=0.184 Sum_probs=69.1
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCce-EEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIK-VTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~-v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
+.+++++++++..+..++.+++. .|.. +..+.+.......+...
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~-~g~~~v~~~~~~~~a~~~~~~~---------------------------------- 49 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSR-LGYEDVLEAEHGVEAWEKLDAN---------------------------------- 49 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHH-TTCCCEEEESSHHHHHHHHHHC----------------------------------
T ss_pred CcEEEEEeCCHHHHHHHHHHHHH-cCCcEEEEeCCHHHHHHHHHhC----------------------------------
Confidence 34688888889999999999987 6774 66665554433222110
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
..+.++++|...+.. +..++++.++.......++++.+...... ......
T Consensus 50 ---------------------------~~~dlvi~D~~~p~~-~g~~~~~~lr~~~~~~~~pii~~s~~~~~--~~~~~~ 99 (129)
T 3h1g_A 50 ---------------------------ADTKVLITDWNMPEM-NGLDLVKKVRSDSRFKEIPIIMITAEGGK--AEVITA 99 (129)
T ss_dssp ---------------------------TTCCEEEECSCCSSS-CHHHHHHHHHTSTTCTTCCEEEEESCCSH--HHHHHH
T ss_pred ---------------------------CCCCEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCeEEEEeCCCCh--HHHHHH
Confidence 012455556554332 22334444444332233455554432211 112234
Q ss_pred ccCccccccccCCCcchHHHHHhhc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
...+.+.++.||+....|...++.+
T Consensus 100 ~~~g~~~~l~KP~~~~~L~~~l~~~ 124 (129)
T 3h1g_A 100 LKAGVNNYIVKPFTPQVLKEKLEVV 124 (129)
T ss_dssp HHHTCCEEEESCCCHHHHHHHHHHH
T ss_pred HHcCccEEEeCCCCHHHHHHHHHHH
Confidence 4567889999999999999888754
No 207
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=83.99 E-value=1.2 Score=46.20 Aligned_cols=14 Identities=50% Similarity=0.881 Sum_probs=12.8
Q ss_pred EEEEEeCCCCCCcc
Q 001330 591 EFEVDDTGKGIPKD 604 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e 604 (1099)
.++|.|+|.|||.+
T Consensus 64 ~i~V~DnG~Gip~~ 77 (198)
T 3ttz_A 64 WIKVTDNGRGIPVD 77 (198)
T ss_dssp EEEEEECSSCCCCS
T ss_pred eEEEEECCCCcccc
Confidence 48999999999997
No 208
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=83.75 E-value=3.8 Score=38.24 Aligned_cols=117 Identities=10% Similarity=0.106 Sum_probs=70.6
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEE-EecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVT-IVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDT 785 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 785 (1099)
...+++++.++...+..+...+.. .|+.+. .+.+.......+...
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~~a~~~~~~~--------------------------------- 53 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLES-LGYDVLGVFDNGEEAVRCAPDL--------------------------------- 53 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHHH---------------------------------
T ss_pred CCceEEEEECCHHHHHHHHHHHHH-CCCeeEEEECCHHHHHHHHHhC---------------------------------
Confidence 346788899999999999999998 788887 477766554444322
Q ss_pred CCcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccc
Q 001330 786 GHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREY 865 (1099)
Q Consensus 786 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 865 (1099)
.+.++++|.......+..++++.++.. + .++++.+..... ......
T Consensus 54 -----------------------------~~dlii~d~~~~~~~~g~~~~~~l~~~-~--~~~ii~ls~~~~--~~~~~~ 99 (140)
T 3cg0_A 54 -----------------------------RPDIALVDIMLCGALDGVETAARLAAG-C--NLPIIFITSSQD--VETFQR 99 (140)
T ss_dssp -----------------------------CCSEEEEESSCCSSSCHHHHHHHHHHH-S--CCCEEEEECCCC--HHHHHH
T ss_pred -----------------------------CCCEEEEecCCCCCCCHHHHHHHHHhC-C--CCCEEEEecCCC--HHHHHH
Confidence 124555555432101122333333333 2 344554433221 122224
Q ss_pred cccCccccccccCCCcchHHHHHhhc
Q 001330 866 RLLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 866 ~~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
....+.+.++.||+....|...+..+
T Consensus 100 ~~~~g~~~~l~kp~~~~~l~~~i~~~ 125 (140)
T 3cg0_A 100 AKRVNPFGYLAKPVAADTLHRSIEMA 125 (140)
T ss_dssp HHTTCCSEEEEESCCHHHHHHHHHHH
T ss_pred HHhcCCCEEEeCCCCHHHHHHHHHHH
Confidence 45678889999999999999888754
No 209
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=83.70 E-value=5.1 Score=36.58 Aligned_cols=114 Identities=10% Similarity=0.165 Sum_probs=70.7
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.+++++++++..+..+...+.. .|..+..+.+.......++..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~~~~~------------------------------------ 45 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRK-EGYEVHCAHDGNEAVEMVEEL------------------------------------ 45 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHTT------------------------------------
T ss_pred CeEEEEECCHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHHHhhC------------------------------------
Confidence 4688888888899999999987 788888877666543332210
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+.. +..+.++..+... ..+++.+...... ........
T Consensus 46 --------------------------~~dlii~D~~~p~~-~g~~~~~~lr~~~---~~~ii~~t~~~~~--~~~~~~~~ 93 (120)
T 3f6p_A 46 --------------------------QPDLILLDIMLPNK-DGVEVCREVRKKY---DMPIIMLTAKDSE--IDKVIGLE 93 (120)
T ss_dssp --------------------------CCSEEEEETTSTTT-HHHHHHHHHHTTC---CSCEEEEEESSCH--HHHHHHHH
T ss_pred --------------------------CCCEEEEeCCCCCC-CHHHHHHHHHhcC---CCCEEEEECCCCh--HHHHHHHh
Confidence 13456666665433 3344455554432 2345544332211 11223456
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.|.+.++.||+....|...++..
T Consensus 94 ~ga~~~l~KP~~~~~l~~~i~~~ 116 (120)
T 3f6p_A 94 IGADDYVTKPFSTRELLARVKAN 116 (120)
T ss_dssp TTCCEEEEESCCHHHHHHHHHHH
T ss_pred CCcceeEcCCCCHHHHHHHHHHH
Confidence 78899999999999988877643
No 210
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=83.51 E-value=3.3 Score=38.49 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=72.7
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCc--eEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNI--KVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDT 785 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~--~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 785 (1099)
+.++++++++...+..+...+.. .|. .+..+.+.......+.....
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~-~~~~~~v~~~~~~~~a~~~l~~~~~------------------------------- 49 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALAN-STVPHEVVTVRDGMEAMAYLRQEGE------------------------------- 49 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHT-CSSCCEEEEECSHHHHHHHHTTCGG-------------------------------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHh-cCCCceEEEECCHHHHHHHHHcccc-------------------------------
Confidence 35688899999999999999988 676 77777776654433221000
Q ss_pred CCcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccc
Q 001330 786 GHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREY 865 (1099)
Q Consensus 786 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 865 (1099)
......+.++++|...... ...+.++.++.......++++.+...... .....
T Consensus 50 ------------------------~~~~~~~dlvi~d~~~~~~-~g~~~~~~l~~~~~~~~~pii~ls~~~~~--~~~~~ 102 (140)
T 1k68_A 50 ------------------------YANASRPDLILLXLNLPKK-DGREVLAEIKSDPTLKRIPVVVLSTSINE--DDIFH 102 (140)
T ss_dssp ------------------------GGSCCCCSEEEECSSCSSS-CHHHHHHHHHHSTTGGGSCEEEEESCCCH--HHHHH
T ss_pred ------------------------cccCCCCcEEEEecCCCcc-cHHHHHHHHHcCcccccccEEEEecCCcH--HHHHH
Confidence 0000124566677655432 12334444444332233455554433211 12223
Q ss_pred cccCccccccccCCCcchHHHHHhhc
Q 001330 866 RLLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 866 ~~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
....+.+.++.||+....|...++.+
T Consensus 103 ~~~~g~~~~l~kP~~~~~l~~~i~~~ 128 (140)
T 1k68_A 103 SYDLHVNCYITKSANLSQLFQIVKGI 128 (140)
T ss_dssp HHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred HHHhchhheecCCCCHHHHHHHHHHH
Confidence 44578889999999999998888754
No 211
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=83.47 E-value=4 Score=37.84 Aligned_cols=115 Identities=10% Similarity=0.099 Sum_probs=69.2
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEE-EecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVT-IVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
+++++++++..+..+..++.. .|..+. .+.+.+.....+.+.
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~~a~~~~~~~------------------------------------ 45 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETL------------------------------------ 45 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHH-TTEEEEEEESSSTTHHHHHHHH------------------------------------
T ss_pred EEEEEcCCHHHHHHHHHHHhh-CCcEEEEEcCCHHHHHHHHHhc------------------------------------
Confidence 578888888899999999988 677776 566665544433322
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...... +..++++..+...+. .+++.+...... ........
T Consensus 46 --------------------------~~dlii~d~~l~~~-~g~~~~~~l~~~~~~--~~ii~~s~~~~~--~~~~~~~~ 94 (134)
T 3f6c_A 46 --------------------------KPDIVIIDVDIPGV-NGIQVLETLRKRQYS--GIIIIVSAKNDH--FYGKHCAD 94 (134)
T ss_dssp --------------------------CCSEEEEETTCSSS-CHHHHHHHHHHTTCC--SEEEEEECC-----CTHHHHHH
T ss_pred --------------------------CCCEEEEecCCCCC-ChHHHHHHHHhcCCC--CeEEEEeCCCCh--HHHHHHHH
Confidence 13456666554332 223334444444333 344544332221 12223455
Q ss_pred CccccccccCCCcchHHHHHhhcc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
.+.+.++.||+....|.+.++.+.
T Consensus 95 ~g~~~~l~kp~~~~~l~~~i~~~~ 118 (134)
T 3f6c_A 95 AGANGFVSKKEGMNNIIAAIEAAK 118 (134)
T ss_dssp TTCSEEEEGGGCTHHHHHHHHHHH
T ss_pred hCCCEEEeCCCCHHHHHHHHHHHH
Confidence 788899999999999999987653
No 212
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=83.44 E-value=24 Score=39.50 Aligned_cols=41 Identities=7% Similarity=0.120 Sum_probs=29.7
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCce-EEEecchhhHHHHH
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIK-VTIVKQEKNLHQEL 749 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~-v~~~~~~~~~~~~l 749 (1099)
.+|++++++...+..+..++....|+. +..+.+.......+
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l 45 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLI 45 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Confidence 368888888899999999998855777 45666665544433
No 213
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=83.00 E-value=4.2 Score=38.25 Aligned_cols=127 Identities=13% Similarity=0.116 Sum_probs=74.8
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCc--eEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNI--KVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSD 784 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~--~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 784 (1099)
.+.++++++++...+..+...+.. .|. .+..+.+.......+......
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~-~g~~~~v~~~~~~~~al~~l~~~~~~----------------------------- 54 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQR-EGVVNPIYRCITGDQALDFLYQTGSY----------------------------- 54 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHH-TTBCSCEEEECSHHHHHHHHHTCCSS-----------------------------
T ss_pred CCccEEEEECCHHHHHHHHHHHHH-cCCCceEEEECCHHHHHHHHHhcccc-----------------------------
Confidence 456788999999999999999988 676 777777776554433321000
Q ss_pred CCCcccccccccCcCCCCccccccccccc--CcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccc
Q 001330 785 TGHHDVALDIKDDYDNVSPHSKKASSKCL--SSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHS 862 (1099)
Q Consensus 785 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~ 862 (1099)
.... ..+.++++|...... ...++++.++.......++++.+..... ...
T Consensus 55 -------------------------~~~~~~~~~dlvi~D~~l~~~-~g~~~~~~l~~~~~~~~~~ii~~t~~~~--~~~ 106 (149)
T 1k66_A 55 -------------------------CNPDIAPRPAVILLDLNLPGT-DGREVLQEIKQDEVLKKIPVVIMTTSSN--PKD 106 (149)
T ss_dssp -------------------------SCGGGCCCCSEEEECSCCSSS-CHHHHHHHHTTSTTGGGSCEEEEESCCC--HHH
T ss_pred -------------------------cCcccCCCCcEEEEECCCCCC-CHHHHHHHHHhCcccCCCeEEEEeCCCC--HHH
Confidence 0000 124566777655432 2234444554433223345555443221 112
Q ss_pred ccccccCccccccccCCCcchHHHHHhhc
Q 001330 863 REYRLLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 863 ~~~~~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.......+.+.++.||+....|...+..+
T Consensus 107 ~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 135 (149)
T 1k66_A 107 IEICYSYSISSYIVKPLEIDRLTETVQTF 135 (149)
T ss_dssp HHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 22344578889999999999998888754
No 214
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=82.77 E-value=3.1 Score=38.43 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=31.3
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHH
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLH 746 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~ 746 (1099)
.+.+++++++++..+..+..++.. .|..+..+.+.....
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~ 44 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSS-LGATTVLAADGVDAL 44 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHH-TTCEEEEESCHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHh-CCceEEEeCCHHHHH
Confidence 456789999999999999999988 788888777665443
No 215
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=82.39 E-value=4.8 Score=38.41 Aligned_cols=127 Identities=12% Similarity=0.126 Sum_probs=75.9
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCc--eEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNI--KVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~--~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
.+++++++++..+..+...+.. .|. .+..+.+.......++... . .
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~-~g~~~~v~~~~~~~~al~~l~~~~---~-~--------------------------- 52 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRR-AGVNNEIIAFTDGTSALNYLFGDD---K-S--------------------------- 52 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHH-TTCCCCEEEESSHHHHHHHHHCTT---S-S---------------------------
T ss_pred ceEEEEeCCHHHHHHHHHHHHh-CCCcceEEEeCCHHHHHHHHhccc---c-c---------------------------
Confidence 4688888999999999999988 676 7777777765544433110 0 0
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
.......+.++++|...... +..++++.++.......++++.+...... ......
T Consensus 53 ----------------------~~~~~~~~dliilD~~l~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~--~~~~~~ 107 (152)
T 3heb_A 53 ----------------------GRVSAGRAQLVLLDLNLPDM-TGIDILKLVKENPHTRRSPVVILTTTDDQ--REIQRC 107 (152)
T ss_dssp ----------------------SGGGTTCBEEEEECSBCSSS-BHHHHHHHHHHSTTTTTSCEEEEESCCCH--HHHHHH
T ss_pred ----------------------cccccCCCCEEEEeCCCCCC-cHHHHHHHHHhcccccCCCEEEEecCCCH--HHHHHH
Confidence 00001235677777765432 23344445544322234455554432211 122234
Q ss_pred ccCccccccccCCCcchHHHHHhhcc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
...+.+.++.||+....|...++.+.
T Consensus 108 ~~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 108 YDLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp HHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred HHCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 55788899999999999999987653
No 216
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=82.34 E-value=3.2 Score=38.72 Aligned_cols=117 Identities=13% Similarity=0.079 Sum_probs=73.0
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
..++++++++...+..++.++.. .|..+..+.+.......++..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~~~~a~~~l~~~----------------------------------- 50 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISN-HFPEVWSAGDGEEGERLFGLH----------------------------------- 50 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHT-TCSCEEEESSHHHHHHHHHHH-----------------------------------
T ss_pred ccEEEEEeCCHHHHHHHHHHHHh-cCcEEEEECCHHHHHHHHhcc-----------------------------------
Confidence 35788899999999999999998 788888888877655544332
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
.+.++++|...... +..++++.++...+ .++++.+..... ........
T Consensus 51 ---------------------------~~dlvi~d~~l~~~-~g~~~~~~l~~~~~--~~~ii~~s~~~~--~~~~~~~~ 98 (137)
T 3hdg_A 51 ---------------------------APDVIITDIRMPKL-GGLEMLDRIKAGGA--KPYVIVISAFSE--MKYFIKAI 98 (137)
T ss_dssp ---------------------------CCSEEEECSSCSSS-CHHHHHHHHHHTTC--CCEEEECCCCCC--HHHHHHHH
T ss_pred ---------------------------CCCEEEEeCCCCCC-CHHHHHHHHHhcCC--CCcEEEEecCcC--hHHHHHHH
Confidence 12355555544321 12233333333332 334554433221 11222345
Q ss_pred cCccccccccCCCcchHHHHHhhcc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
..+.+.++.||+....|...+..+.
T Consensus 99 ~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (137)
T 3hdg_A 99 ELGVHLFLPKPIEPGRLMETLEDFR 123 (137)
T ss_dssp HHCCSEECCSSCCHHHHHHHHHHHH
T ss_pred hCCcceeEcCCCCHHHHHHHHHHHH
Confidence 5778899999999999999987654
No 217
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=81.93 E-value=9.1 Score=34.22 Aligned_cols=38 Identities=8% Similarity=0.199 Sum_probs=29.8
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHH
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQE 748 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~ 748 (1099)
+++++++++..+..+...+.. .|+.+..+.+.......
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~~~~~a~~~ 40 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQE-EGYEIDTAENGEEALKK 40 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHH-CCCEEEEeCCHHHHHHH
Confidence 578888888899999999988 78888877776654443
No 218
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=81.72 E-value=4.4 Score=38.81 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=71.9
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
...+|++++++...+..+..++.. .|+.+..+.+.......+...
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l~~~---------------------------------- 57 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSP-LPYTLHFARDATQALQLLASR---------------------------------- 57 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTT-SSCEEEEESSHHHHHHHHHHS----------------------------------
T ss_pred CCceEEEECCCHHHHHHHHHHhcc-cCcEEEEECCHHHHHHHHHcC----------------------------------
Confidence 345788898999999999999998 688888888776655444321
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
.+.++++|...... ...++++.++...+ .++++.+..... .......
T Consensus 58 ----------------------------~~dlvi~D~~l~~~-~g~~~~~~l~~~~~--~~~ii~~s~~~~--~~~~~~~ 104 (153)
T 3hv2_A 58 ----------------------------EVDLVISAAHLPQM-DGPTLLARIHQQYP--STTRILLTGDPD--LKLIAKA 104 (153)
T ss_dssp ----------------------------CCSEEEEESCCSSS-CHHHHHHHHHHHCT--TSEEEEECCCCC--HHHHHHH
T ss_pred ----------------------------CCCEEEEeCCCCcC-cHHHHHHHHHhHCC--CCeEEEEECCCC--HHHHHHH
Confidence 12455566544321 12233333333222 334554433221 1122234
Q ss_pred ccCc-cccccccCCCcchHHHHHhhcc
Q 001330 867 LLPI-CDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 867 ~~~~-~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
...+ .+.++.||+....|...+..+.
T Consensus 105 ~~~g~~~~~l~KP~~~~~l~~~i~~~l 131 (153)
T 3hv2_A 105 INEGEIYRYLSKPWDDQELLLALRQAL 131 (153)
T ss_dssp HHTTCCSEEECSSCCHHHHHHHHHHHH
T ss_pred HhCCCcceEEeCCCCHHHHHHHHHHHH
Confidence 4566 7889999999999998887543
No 219
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=81.00 E-value=4.4 Score=38.05 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=72.6
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
..++++++++...+..+..++.. .|+.+..+.+.......+..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l~~------------------------------------ 46 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEK-DGFNVIWAKNEQEAFTFLRR------------------------------------ 46 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGG-GTCEEEEESSHHHHHHHHTT------------------------------------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHhc------------------------------------
Confidence 34688888889999999999988 78888877766544332210
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
..+.++++|. ... .+..+.++.++...+ .++++.+..... ........
T Consensus 47 --------------------------~~~dlvi~d~-~~~-~~g~~~~~~l~~~~~--~~pii~ls~~~~--~~~~~~~~ 94 (142)
T 2qxy_A 47 --------------------------EKIDLVFVDV-FEG-EESLNLIRRIREEFP--DTKVAVLSAYVD--KDLIINSV 94 (142)
T ss_dssp --------------------------SCCSEEEEEC-TTT-HHHHHHHHHHHHHCT--TCEEEEEESCCC--HHHHHHHH
T ss_pred --------------------------cCCCEEEEeC-CCC-CcHHHHHHHHHHHCC--CCCEEEEECCCC--HHHHHHHH
Confidence 1135667776 433 233445555554433 345555433221 11122344
Q ss_pred cCccccccccCCCcchHHHHHhhcc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
..+.+.++.||+....|...+..+.
T Consensus 95 ~~g~~~~l~kP~~~~~l~~~i~~~~ 119 (142)
T 2qxy_A 95 KAGAVDYILKPFRLDYLLERVKKII 119 (142)
T ss_dssp HHTCSCEEESSCCHHHHHHHHHHHH
T ss_pred HCCcceeEeCCCCHHHHHHHHHHHH
Confidence 5677889999999999998887653
No 220
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=80.59 E-value=2 Score=49.26 Aligned_cols=50 Identities=24% Similarity=0.466 Sum_probs=25.9
Q ss_pred EEEEeCCCCCCcccH--------hhhcccccccc---ccCCCCCCC-ccccHHHHHHHHHhc
Q 001330 592 FEVDDTGKGIPKDKQ--------NSIFEEFVQVK---ETALGHQEG-LGLGLGIVQSMVHLM 641 (1099)
Q Consensus 592 i~V~DtG~GI~~e~l--------~~IFe~F~q~d---~s~~~~~~G-tGLGLaIvk~lVe~~ 641 (1099)
|+|.|+|.|||.+.. +-||-...... .......+| .|.|++.|-.+-+.+
T Consensus 84 I~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~~l 145 (408)
T 3lnu_A 84 CEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTKV 145 (408)
T ss_dssp EEEEECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHHHHHHTEEEE
T ss_pred EEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccceehhccCeE
Confidence 899999999999884 34553221110 000111223 699999888776554
No 221
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=80.45 E-value=6.3 Score=36.89 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=71.8
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCc--eEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNI--KVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~--~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
.++++++++...+..+..++.. .|. .+..+.+.......+.....
T Consensus 10 ~~iLivdd~~~~~~~l~~~l~~-~~~~~~v~~~~~~~~a~~~l~~~~~-------------------------------- 56 (146)
T 3ilh_A 10 DSVLLIDDDDIVNFLNTTIIRM-THRVEEIQSVTSGNAAINKLNELYA-------------------------------- 56 (146)
T ss_dssp EEEEEECSCHHHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHT--------------------------------
T ss_pred ceEEEEeCCHHHHHHHHHHHHh-cCCCeeeeecCCHHHHHHHHHHhhc--------------------------------
Confidence 4688888888889999999988 777 77788777766555543210
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccC--CCCcceEEEeccchhccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDV--PSLSCKVVWIDNSVIRNAHSRE 864 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~ 864 (1099)
....+.++++|...... +..++++.++... .....+++.+...... ....
T Consensus 57 -------------------------~~~~~dlvi~D~~l~~~-~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~--~~~~ 108 (146)
T 3ilh_A 57 -------------------------AGRWPSIICIDINMPGI-NGWELIDLFKQHFQPMKNKSIVCLLSSSLDP--RDQA 108 (146)
T ss_dssp -------------------------SSCCCSEEEEESSCSSS-CHHHHHHHHHHHCGGGTTTCEEEEECSSCCH--HHHH
T ss_pred -------------------------cCCCCCEEEEcCCCCCC-CHHHHHHHHHHhhhhccCCCeEEEEeCCCCh--HHHH
Confidence 00123566666654332 1223333333311 1123344444332211 1122
Q ss_pred ccccCc-cccccccCCCcchHHHHHhhc
Q 001330 865 YRLLPI-CDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 865 ~~~~~~-~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.....+ .+.++.||+....|...++..
T Consensus 109 ~~~~~g~~~~~l~KP~~~~~L~~~i~~~ 136 (146)
T 3ilh_A 109 KAEASDWVDYYVSKPLTANALNNLYNKV 136 (146)
T ss_dssp HHHHCSSCCEEECSSCCHHHHHHHHHHH
T ss_pred HHHhcCCcceeeeCCCCHHHHHHHHHHH
Confidence 334456 888999999999999998764
No 222
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=80.35 E-value=1.9 Score=40.44 Aligned_cols=117 Identities=10% Similarity=0.148 Sum_probs=73.0
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.++++++++...+..+..++.. .|+.+..+.+...... .+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~---~l------------------------------------ 46 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSP-LDVTIQCFASAESFMR---QQ------------------------------------ 46 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT-SSSEEEEESSHHHHTT---SC------------------------------------
T ss_pred CeEEEEcCCHHHHHHHHHHHHH-CCcEEEEeCCHHHHHH---HH------------------------------------
Confidence 4688888889999999999988 6888877665543210 00
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCCh-HHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSV-SELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
....+.++++|...... .+..+.++.++...+. ++++.+..... ........
T Consensus 47 -----------------------~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~--~~ii~~s~~~~--~~~~~~~~ 99 (136)
T 3kto_A 47 -----------------------ISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFH--LPTIVMASSSD--IPTAVRAM 99 (136)
T ss_dssp -----------------------CCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCC--CCEEEEESSCC--HHHHHHHH
T ss_pred -----------------------hccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCC--CCEEEEEcCCC--HHHHHHHH
Confidence 01125677888765441 2344555555554433 34444433221 11223445
Q ss_pred cCccccccccCCCcchHHHHHhhcc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
..+.+.++.||+....|...++.+.
T Consensus 100 ~~ga~~~l~KP~~~~~l~~~i~~~~ 124 (136)
T 3kto_A 100 RASAADFIEKPFIEHVLVHDVQQII 124 (136)
T ss_dssp HTTCSEEEESSBCHHHHHHHHHHHH
T ss_pred HcChHHheeCCCCHHHHHHHHHHHH
Confidence 6788999999999999999887653
No 223
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=79.79 E-value=8 Score=34.86 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=29.1
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCce-EEEecchhhHHHHH
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIK-VTIVKQEKNLHQEL 749 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~-v~~~~~~~~~~~~l 749 (1099)
.+++++++++..+..+...+.. .|+. +..+.+.......+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~-~g~~vv~~~~~~~~a~~~~ 43 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITK-AGYEVAGEATNGREAVEKY 43 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHH
T ss_pred ceEEEEcCcHHHHHHHHHHHhh-cCcEEEEEECCHHHHHHHH
Confidence 4688888888889999999986 7887 44566665544433
No 224
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=79.76 E-value=8.7 Score=35.74 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=30.1
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhh
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKN 744 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~ 744 (1099)
.+.++++++++...+..+...+.. .|+.+..+.+...
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~ 50 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQ-LGAEVTVHPSGSA 50 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHH-cCCEEEEeCCHHH
Confidence 566788999999999999999988 6888877766654
No 225
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=79.72 E-value=5.9 Score=36.86 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=70.7
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.++++++++...+..+...+.. .|+.+..+.+.......+...
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l~~~------------------------------------ 46 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKN-HFSKVITLSSPVSLSTVLREE------------------------------------ 46 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT-TSSEEEEECCHHHHHHHHHHS------------------------------------
T ss_pred ceEEEEeCCHHHHHHHHHHHHh-CCcEEEEeCCHHHHHHHHHcC------------------------------------
Confidence 4688888888999999999988 688888877766554433321
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCC-----ChHHHHHHHHhccccCCCCcceEEEeccchhcccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAG-----SVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSR 863 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~-----~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 863 (1099)
.+.++++|.... .. +..+.++.++...+ .++++.+..... ....
T Consensus 47 --------------------------~~dlvi~d~~~~~~~~~~~-~g~~~~~~l~~~~~--~~~ii~ls~~~~--~~~~ 95 (140)
T 2qr3_A 47 --------------------------NPEVVLLDMNFTSGINNGN-EGLFWLHEIKRQYR--DLPVVLFTAYAD--IDLA 95 (140)
T ss_dssp --------------------------CEEEEEEETTTTC-----C-CHHHHHHHHHHHCT--TCCEEEEEEGGG--HHHH
T ss_pred --------------------------CCCEEEEeCCcCCCCCCCc-cHHHHHHHHHhhCc--CCCEEEEECCCC--HHHH
Confidence 134566665543 11 12233333333333 334444433221 1122
Q ss_pred cccccCccccccccCCCcchHHHHHhhcc
Q 001330 864 EYRLLPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 864 ~~~~~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
......+.+.++.||+....|...+..+.
T Consensus 96 ~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 124 (140)
T 2qr3_A 96 VRGIKEGASDFVVKPWDNQKLLETLLNAA 124 (140)
T ss_dssp HHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHcCchheeeCCCCHHHHHHHHHHHH
Confidence 23445788899999999999998887553
No 226
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=79.46 E-value=11 Score=35.15 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=67.3
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.++++++++...+..+..++... ..+..+.+.......+...
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~--~~v~~~~~~~~a~~~~~~~------------------------------------ 45 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE--YLVIESKNEKEALEQIDHH------------------------------------ 45 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT--SEEEEESSHHHHHHHHHHH------------------------------------
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc--ceEEEeCCHHHHHHHHhcC------------------------------------
Confidence 46888888888999999999884 7777777766555444332
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...... +...++..++.......++++.+..... .........
T Consensus 46 --------------------------~~dlvi~D~~l~~~-~g~~~~~~l~~~~~~~~~~ii~~s~~~~--~~~~~~~~~ 96 (140)
T 3n53_A 46 --------------------------HPDLVILDMDIIGE-NSPNLCLKLKRSKGLKNVPLILLFSSEH--KEAIVNGLH 96 (140)
T ss_dssp --------------------------CCSEEEEETTC-------CHHHHHHTSTTCTTCCEEEEECC------CTTTTTT
T ss_pred --------------------------CCCEEEEeCCCCCC-cHHHHHHHHHcCcccCCCCEEEEecCCC--HHHHHHHHh
Confidence 12345555543221 2223333444333112344554433221 122234456
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.+.+.++.||+....|...++.+
T Consensus 97 ~g~~~~l~KP~~~~~l~~~i~~~ 119 (140)
T 3n53_A 97 SGADDYLTKPFNRNDLLSRIEIH 119 (140)
T ss_dssp CCCSEEEESSCCHHHHHHHHHHH
T ss_pred cCCCeeeeCCCCHHHHHHHHHHH
Confidence 78899999999999999888754
No 227
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=79.30 E-value=2.9 Score=39.73 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=28.8
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHH
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQ 747 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~ 747 (1099)
.+.+++++++++..+..+..+++. .|..+..+.+.+....
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~ 52 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEK-AGHKVLCVNGAEQVLD 52 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC---CEEEEESSHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHH-cCCeEEEeCCHHHHHH
Confidence 445788888889999999999987 7888887776654433
No 228
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=79.15 E-value=7 Score=36.62 Aligned_cols=117 Identities=11% Similarity=0.081 Sum_probs=70.3
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.++++++++...+..+..++.. .|..+..+.+.......+...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~-~g~~v~~~~~~~~a~~~~~~~------------------------------------ 46 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEI-DGNEVLTASSSTEGLRIFTEN------------------------------------ 46 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHT------------------------------------
T ss_pred CEEEEEcCCHHHHHHHHHHHHh-CCceEEEeCCHHHHHHHHHhC------------------------------------
Confidence 4688888888999999999987 788888887776554433321
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
...+.++++|...... ...++++.++...+ .++++.+..... .........
T Consensus 47 ------------------------~~~~dlvi~d~~l~~~-~g~~~~~~l~~~~~--~~~ii~ls~~~~--~~~~~~~~~ 97 (143)
T 3jte_A 47 ------------------------CNSIDVVITDMKMPKL-SGMDILREIKKITP--HMAVIILTGHGD--LDNAILAMK 97 (143)
T ss_dssp ------------------------TTTCCEEEEESCCSSS-CHHHHHHHHHHHCT--TCEEEEEECTTC--HHHHHHHHH
T ss_pred ------------------------CCCCCEEEEeCCCCCC-cHHHHHHHHHHhCC--CCeEEEEECCCC--HHHHHHHHH
Confidence 0113455666544321 12223333333322 334454433221 112223455
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.+.+.++.||+....|...+..+
T Consensus 98 ~g~~~~l~kp~~~~~l~~~l~~~ 120 (143)
T 3jte_A 98 EGAFEYLRKPVTAQDLSIAINNA 120 (143)
T ss_dssp TTCSEEEESSCCHHHHHHHHHHH
T ss_pred hCcceeEeCCCCHHHHHHHHHHH
Confidence 78889999999999998888754
No 229
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=78.52 E-value=14 Score=34.12 Aligned_cols=115 Identities=10% Similarity=0.155 Sum_probs=68.8
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.+++++.++...+..+...+.. .|..+..+.+.......+...
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~~~~~------------------------------------ 46 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLER-SGYDVITASDGEEALKKAETE------------------------------------ 46 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHH------------------------------------
T ss_pred CEEEEEECCHHHHHHHHHHHHH-CCcEEEEecCHHHHHHHHhhc------------------------------------
Confidence 5688888888889999999887 788888777666544433221
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+... ..+.++.++...+ .++++.+...... ........
T Consensus 47 --------------------------~~dlvl~D~~l~~~~-g~~~~~~l~~~~~--~~~ii~~s~~~~~--~~~~~~~~ 95 (136)
T 1mvo_A 47 --------------------------KPDLIVLDVMLPKLD-GIEVCKQLRQQKL--MFPILMLTAKDEE--FDKVLGLE 95 (136)
T ss_dssp --------------------------CCSEEEEESSCSSSC-HHHHHHHHHHTTC--CCCEEEEECTTCC--CCHHHHHH
T ss_pred --------------------------CCCEEEEecCCCCCC-HHHHHHHHHcCCC--CCCEEEEECCCCH--HHHHHHHh
Confidence 123455555443221 2233334443323 2344544332211 11223445
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.+.+.++.||+....|...++.+
T Consensus 96 ~g~~~~l~KP~~~~~l~~~i~~~ 118 (136)
T 1mvo_A 96 LGADDYMTKPFSPREVNARVKAI 118 (136)
T ss_dssp TTCCEEEESSCCHHHHHHHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHH
Confidence 78889999999999998888754
No 230
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=78.37 E-value=7 Score=41.85 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHhhcCCeEE--EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH-----HHHHHHHhcc
Q 001330 970 DDAIVLKVTSAVLGKLGAKFE--VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG-----WEATRLIRKE 1042 (1099)
Q Consensus 970 Dd~~~~~~l~~~L~~~G~~v~--~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG-----~e~~r~IR~~ 1042 (1099)
|.....+.. +.|.+.||.|. +..|...| +.+.+ ..+++| |.+-.|...| .++++.+++.
T Consensus 109 D~~~tv~aa-~~L~k~Gf~Vlpy~~~D~~~a-k~l~~-----------~G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~ 174 (268)
T 2htm_A 109 DPLETLKAA-ERLIEEDFLVLPYMGPDLVLA-KRLAA-----------LGTATV-MPLAAPIGSGWGVRTRALLELFARE 174 (268)
T ss_dssp CHHHHHHHH-HHHHHTTCEECCEECSCHHHH-HHHHH-----------HTCSCB-EEBSSSTTTCCCSTTHHHHHHHHHT
T ss_pred CHHHHHHHH-HHHHHCCCEEeeccCCCHHHH-HHHHh-----------cCCCEE-EecCccCcCCcccCCHHHHHHHHHh
Confidence 333344444 44556799976 44566544 33322 146766 8877775555 4568888762
Q ss_pred ccccCCC-ccEEEEeccCCHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHHH
Q 001330 1043 EEQYDVH-IPIIALTAHAMAGVASKIVDAGMDFHL-----TKPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1043 ~~~~~~~-ipIIalTa~~~~~~~~~~l~aG~ddyL-----~KPi~~~~L~~~l~~i~ 1093 (1099)
..+ +|||+=.+-..+++...+++.|+|+.+ +|--++..+.+.+....
T Consensus 175 ----~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 227 (268)
T 2htm_A 175 ----KASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAV 227 (268)
T ss_dssp ----TTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred ----cCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 134 899987778899999999999999985 46555666655555443
No 231
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=78.35 E-value=5.9 Score=37.83 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=31.4
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHH
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLH 746 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~ 746 (1099)
.+.+|+++.++...+..+...+.. .|+.+..+.+.....
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~ 44 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKR-LGCNIITFTSPLDAL 44 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHT-TTCEEEEESCHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHH-cCCeEEEeCCHHHHH
Confidence 456789999999999999999988 788888777765443
No 232
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=78.35 E-value=6.8 Score=35.66 Aligned_cols=40 Identities=5% Similarity=0.020 Sum_probs=30.7
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHH
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQEL 749 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l 749 (1099)
.+++++++++..+..+...+.. .|..+..+.+.......+
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~~~~~a~~~~ 43 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNK-EGYQTFQAANGLQALDIV 43 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT-TTCEEEEESSHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHH-CCcEEEEeCCHHHHHHHH
Confidence 3688888888899999999987 788888777766544433
No 233
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=78.24 E-value=5.3 Score=37.68 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=73.5
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccC-ceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLN-IKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDT 785 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g-~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 785 (1099)
.+.+|++++++...+..+..++.. .| +.+..+.+.......+.+
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~~v~~~~~~~~~~~~~~~---------------------------------- 63 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGD-AGRYRVTRTVGRAAQIVQRTD---------------------------------- 63 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHH-HCSCEEEEECCCHHHHTTCHH----------------------------------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhh-CCCeEEEEeCCHHHHHHHHHh----------------------------------
Confidence 556889999999999999999988 56 877776655422111000
Q ss_pred CCcccccccccCcCCCCccccccccccc-CcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccc
Q 001330 786 GHHDVALDIKDDYDNVSPHSKKASSKCL-SSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSRE 864 (1099)
Q Consensus 786 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 864 (1099)
. ..+.++++|...... +..++++.++...+. ++++.+..... .....
T Consensus 64 ---------------------------~~~~~dlvi~D~~l~~~-~g~~~~~~l~~~~~~--~~ii~lt~~~~--~~~~~ 111 (146)
T 4dad_A 64 ---------------------------GLDAFDILMIDGAALDT-AELAAIEKLSRLHPG--LTCLLVTTDAS--SQTLL 111 (146)
T ss_dssp ---------------------------HHTTCSEEEEECTTCCH-HHHHHHHHHHHHCTT--CEEEEEESCCC--HHHHH
T ss_pred ---------------------------cCCCCCEEEEeCCCCCc-cHHHHHHHHHHhCCC--CcEEEEeCCCC--HHHHH
Confidence 0 124577777765443 334455555544333 34444433221 12222
Q ss_pred ccccCccccccccCCCcchHHHHHhhcc
Q 001330 865 YRLLPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 865 ~~~~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
.....+.+.++.||+....|...+..+.
T Consensus 112 ~~~~~ga~~~l~Kp~~~~~L~~~i~~~~ 139 (146)
T 4dad_A 112 DAMRAGVRDVLRWPLEPRALDDALKRAA 139 (146)
T ss_dssp HHHTTTEEEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHhCCceeEcCCCCHHHHHHHHHHHH
Confidence 4456788899999999999998887553
No 234
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=78.01 E-value=6.2 Score=37.09 Aligned_cols=119 Identities=7% Similarity=0.189 Sum_probs=71.3
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCce--EEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIK--VTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDT 785 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~--v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 785 (1099)
..++++++++...+..+..++.. .|.. +..+.+.......+..
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~-~~~~~~v~~~~~~~~a~~~l~~---------------------------------- 49 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDR-KDIHCQLEFVDNGAKALYQVQQ---------------------------------- 49 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHH-TTCCEEEEEESSHHHHHHHHTT----------------------------------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHh-cCCCeeEEEECCHHHHHHHhhc----------------------------------
Confidence 35688888888999999999988 6766 6666666543332210
Q ss_pred CCcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccc
Q 001330 786 GHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREY 865 (1099)
Q Consensus 786 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 865 (1099)
..+.++++|...... +..+.++.++.......++++.+...... .....
T Consensus 50 ----------------------------~~~dlii~D~~l~~~-~g~~~~~~lr~~~~~~~~pii~~s~~~~~--~~~~~ 98 (144)
T 3kht_A 50 ----------------------------AKYDLIILDIGLPIA-NGFEVMSAVRKPGANQHTPIVILTDNVSD--DRAKQ 98 (144)
T ss_dssp ----------------------------CCCSEEEECTTCGGG-CHHHHHHHHHSSSTTTTCCEEEEETTCCH--HHHHH
T ss_pred ----------------------------CCCCEEEEeCCCCCC-CHHHHHHHHHhcccccCCCEEEEeCCCCH--HHHHH
Confidence 113456666654322 23344455554322334455555432211 22223
Q ss_pred cccCccccccccCC-CcchHHHHHhhcc
Q 001330 866 RLLPICDHVISRPF-HGSRLIEVLKLLP 892 (1099)
Q Consensus 866 ~~~~~~~~~~~kP~-~~~~L~~~l~~l~ 892 (1099)
....|.+.++.||+ ....|.+.++.+.
T Consensus 99 ~~~~ga~~~l~Kp~~~~~~l~~~i~~~l 126 (144)
T 3kht_A 99 CMAAGASSVVDKSSNNVTDFYGRIYAIF 126 (144)
T ss_dssp HHHTTCSEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 45678899999999 9999988887543
No 235
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=77.57 E-value=7.6 Score=35.53 Aligned_cols=117 Identities=10% Similarity=0.159 Sum_probs=67.9
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCc-eEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNI-KVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~-~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
.+++++++++..+..+...+.. .|. .+..+.+.+.....+..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~-~g~~~v~~~~~~~~a~~~~~~------------------------------------ 49 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQ-LGFKQITAAGDGEQGMKIMAQ------------------------------------ 49 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHT-TTCSCEECCSSHHHHHHHHHT------------------------------------
T ss_pred CeEEEEcCCHHHHHHHHHHHHH-CCCcEEEecCCHHHHHHHHHc------------------------------------
Confidence 4688888888899999999987 677 56666655543332211
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
..+.++++|...+... ..+.++.++........+++.+...... .......
T Consensus 50 --------------------------~~~dlvl~D~~l~~~~-g~~~~~~l~~~~~~~~~~ii~~s~~~~~--~~~~~~~ 100 (129)
T 1p6q_A 50 --------------------------NPHHLVISDFNMPKMD-GLGLLQAVRANPATKKAAFIILTAQGDR--ALVQKAA 100 (129)
T ss_dssp --------------------------SCCSEEEECSSSCSSC-HHHHHHHHTTCTTSTTCEEEECCSCCCH--HHHHHHH
T ss_pred --------------------------CCCCEEEEeCCCCCCC-HHHHHHHHhcCccccCCCEEEEeCCCCH--HHHHHHH
Confidence 0124555565543221 2334444444322234556655433211 1112334
Q ss_pred cCccccccccCCCcchHHHHHhhc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
..+.+.++.||+....|...+..+
T Consensus 101 ~~g~~~~l~KP~~~~~l~~~i~~~ 124 (129)
T 1p6q_A 101 ALGANNVLAKPFTIEKMKAAIEAV 124 (129)
T ss_dssp HHTCSCEECCCSSHHHHHHHHHHH
T ss_pred HcCCCEEEECCCCHHHHHHHHHHH
Confidence 467788999999999998887643
No 236
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=77.10 E-value=11 Score=33.76 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=29.1
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHH
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQE 748 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~ 748 (1099)
+++++++++..+..+...+.. .|..+..+.+.......
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~-~g~~v~~~~~~~~a~~~ 39 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQD-AGHQVDDAEDAKEADYY 39 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHH
T ss_pred eEEEEeCcHHHHHHHHHHHhh-cCCEEEEeCCHHHHHHH
Confidence 477888888889999999887 78888877776654443
No 237
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=76.36 E-value=11 Score=34.42 Aligned_cols=115 Identities=14% Similarity=0.072 Sum_probs=67.9
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.+++++++++..+..+..++.. .|..+..+.+...... .+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~~~~~~~~---~~~----------------------------------- 44 (126)
T 1dbw_A 4 YTVHIVDDEEPVRKSLAFMLTM-NGFAVKMHQSAEAFLA---FAP----------------------------------- 44 (126)
T ss_dssp CEEEEEESSHHHHHHHHHHHHH-TTCEEEEESCHHHHHH---HGG-----------------------------------
T ss_pred CEEEEEcCCHHHHHHHHHHHHh-CCcEEEEeCCHHHHHH---HHh-----------------------------------
Confidence 4688889999999999999887 6888776665543322 110
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
...+.++++|...+... ..+.++.++...+ ..+++.+..... .........
T Consensus 45 ------------------------~~~~dlvi~D~~l~~~~-g~~~~~~l~~~~~--~~~ii~~s~~~~--~~~~~~~~~ 95 (126)
T 1dbw_A 45 ------------------------DVRNGVLVTDLRMPDMS-GVELLRNLGDLKI--NIPSIVITGHGD--VPMAVEAMK 95 (126)
T ss_dssp ------------------------GCCSEEEEEECCSTTSC-HHHHHHHHHHTTC--CCCEEEEECTTC--HHHHHHHHH
T ss_pred ------------------------cCCCCEEEEECCCCCCC-HHHHHHHHHhcCC--CCCEEEEECCCC--HHHHHHHHH
Confidence 01134566666543221 2233333433322 334555433221 112223455
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.|.+.++.||+....|...++.+
T Consensus 96 ~ga~~~l~Kp~~~~~l~~~i~~~ 118 (126)
T 1dbw_A 96 AGAVDFIEKPFEDTVIIEAIERA 118 (126)
T ss_dssp TTCSEEEESSCCHHHHHHHHHHH
T ss_pred hCHHHheeCCCCHHHHHHHHHHH
Confidence 78889999999999998888754
No 238
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=76.08 E-value=8.3 Score=36.00 Aligned_cols=123 Identities=11% Similarity=0.129 Sum_probs=72.2
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCc--eEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNI--KVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDT 785 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~--~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 785 (1099)
..++++++++...+..+...+.. .|. .+..+.+.......++....
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~-~g~~~~v~~~~~~~~a~~~l~~~~~------------------------------- 54 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHK-ISSLIKIEIAKSGNQALDMLYGRNK------------------------------- 54 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHH-HCTTCCEEEESSHHHHHHHHHTCTT-------------------------------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHH-hCCCceEEEECCHHHHHHHHHhccc-------------------------------
Confidence 35688899999999999999987 666 77777777655443331100
Q ss_pred CCcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccc
Q 001330 786 GHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREY 865 (1099)
Q Consensus 786 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 865 (1099)
.....+.++++|...... +..++++.++.......++++.+..... ......
T Consensus 55 -------------------------~~~~~~dlii~D~~l~~~-~g~~~~~~l~~~~~~~~~~ii~ls~~~~--~~~~~~ 106 (143)
T 2qvg_A 55 -------------------------ENKIHPKLILLDINIPKM-NGIEFLKELRDDSSFTDIEVFVLTAAYT--SKDKLA 106 (143)
T ss_dssp -------------------------CCCCCCSEEEEETTCTTS-CHHHHHHHHTTSGGGTTCEEEEEESCCC--HHHHHH
T ss_pred -------------------------ccCCCCCEEEEecCCCCC-CHHHHHHHHHcCccccCCcEEEEeCCCC--HHHHHH
Confidence 000123566666654332 2234444444433112345555443221 122234
Q ss_pred cccCccccccccCCCcchHHHHHhh
Q 001330 866 RLLPICDHVISRPFHGSRLIEVLKL 890 (1099)
Q Consensus 866 ~~~~~~~~~~~kP~~~~~L~~~l~~ 890 (1099)
....+.+.++.||+....|.+.+..
T Consensus 107 ~~~~g~~~~l~kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 107 FESLNIRGHLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp HTTTTCCEEEESSCCHHHHHHHHHH
T ss_pred HHhcCCCeEEECCCCHHHHHHHHHH
Confidence 5567889999999999999888653
No 239
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=76.02 E-value=1.4 Score=47.23 Aligned_cols=56 Identities=14% Similarity=0.249 Sum_probs=33.8
Q ss_pred EEEEEeCCCCCCcccHhhhccc--------cc---cccccCCCCCCCccccHHHHHHHHHhcCCEEEEEec
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEE--------FV---QVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADK 650 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~--------F~---q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~ 650 (1099)
.|+|.|+|+||+++++..-+-. |. +........-|-.|+|+.=|-. ..-++.|.++
T Consensus 131 tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFm----VAdkV~V~Sk 197 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFL----VSNRVEVYTK 197 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGG----TEEEEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeec----cCCEEEEEEc
Confidence 5899999999999998865532 21 1110111223567999876533 2345555555
No 240
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=76.02 E-value=15 Score=38.63 Aligned_cols=84 Identities=12% Similarity=0.050 Sum_probs=60.1
Q ss_pred HHHHHHHhhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC------CCCCCHHHHHHHHhccccccCC
Q 001330 976 KVTSAVLGKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE------MPVMNGWEATRLIRKEEEQYDV 1048 (1099)
Q Consensus 976 ~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~------MP~mdG~e~~r~IR~~~~~~~~ 1048 (1099)
.-+.+.+.+.|..+. .+.+.++|..... ..+|+|..-.. .+...++++++++++.
T Consensus 119 ~~~i~~~~~~g~~v~~~v~t~eea~~a~~------------~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~------ 180 (229)
T 3q58_A 119 DSLLTRIRLHGLLAMADCSTVNEGISCHQ------------KGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA------ 180 (229)
T ss_dssp HHHHHHHHHTTCEEEEECSSHHHHHHHHH------------TTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT------
T ss_pred HHHHHHHHHCCCEEEEecCCHHHHHHHHh------------CCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc------
Confidence 334444566687654 5678888866653 25788853221 2334578999999852
Q ss_pred CccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1049 HIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1049 ~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
++|+|+-.+-.+.++..+++++|+++++.
T Consensus 181 ~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 181 GCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp TCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 58999999999999999999999999865
No 241
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=75.75 E-value=9.2 Score=36.33 Aligned_cols=118 Identities=8% Similarity=-0.034 Sum_probs=69.7
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCce--EEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIK--VTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSD 784 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~--v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 784 (1099)
.+.+|++++++...+..+..++.. .|.. +..+.+.......+...
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~-~~~~~~v~~~~~~~~a~~~l~~~-------------------------------- 60 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSL-SGSVNVVGEADDGAAALELIKAH-------------------------------- 60 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHH-HSSEEEEEEESSHHHHHHHHHHH--------------------------------
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhh-CCCeEEEEEeCCHHHHHHHHHhc--------------------------------
Confidence 556788898999999999999988 5532 44566665544443322
Q ss_pred CCCcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccc
Q 001330 785 TGHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSRE 864 (1099)
Q Consensus 785 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 864 (1099)
.+.++++|...... +..+.++.++...+. .+++.+..... .....
T Consensus 61 ------------------------------~~dlii~d~~l~~~-~g~~~~~~l~~~~~~--~~ii~~s~~~~--~~~~~ 105 (152)
T 3eul_A 61 ------------------------------LPDVALLDYRMPGM-DGAQVAAAVRSYELP--TRVLLISAHDE--PAIVY 105 (152)
T ss_dssp ------------------------------CCSEEEEETTCSSS-CHHHHHHHHHHTTCS--CEEEEEESCCC--HHHHH
T ss_pred ------------------------------CCCEEEEeCCCCCC-CHHHHHHHHHhcCCC--CeEEEEEccCC--HHHHH
Confidence 12455666544322 122333344443332 34454433221 11222
Q ss_pred ccccCccccccccCCCcchHHHHHhhcc
Q 001330 865 YRLLPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 865 ~~~~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
.....+.+.++.||+....|...+..+.
T Consensus 106 ~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 133 (152)
T 3eul_A 106 QALQQGAAGFLLKDSTRTEIVKAVLDCA 133 (152)
T ss_dssp HHHHTTCSEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEecCCCHHHHHHHHHHHH
Confidence 3455788899999999999998887653
No 242
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=75.68 E-value=8.1 Score=36.73 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=30.4
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHH
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQEL 749 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l 749 (1099)
..+++++++++..+..+..++.. |..+..+.+.......+
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~--~~~v~~~~~~~~a~~~l 43 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF--DFEVTTCESGPEALACI 43 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT--TSEEEEESSHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc--CceEEEeCCHHHHHHHH
Confidence 35788888889999999999864 78888887776554443
No 243
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=75.66 E-value=8.6 Score=35.60 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=30.4
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHH
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQE 748 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~ 748 (1099)
.+++++++++..+..+...++. .|+.+..+.+.......
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~ 42 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEF-EGYEVEIAATAGEGLAK 42 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHH-CCceEEEeCCHHHHHHH
Confidence 4688888888999999999987 78888877776654443
No 244
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=75.66 E-value=8.7 Score=35.08 Aligned_cols=117 Identities=12% Similarity=0.203 Sum_probs=66.8
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCc-eEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNI-KVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~-~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
.+++++++++..+..+...+.. .|. .+..+.+.......+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~~-~~~~~v~~~~~~~~a~~~~~~------------------------------------ 47 (128)
T 1jbe_A 5 LKFLVVDDFSTMRRIVRNLLKE-LGFNNVEEAEDGVDALNKLQA------------------------------------ 47 (128)
T ss_dssp CCEEEECSCHHHHHHHHHHHHH-TTCCCEEEESSHHHHHHHHTT------------------------------------
T ss_pred cEEEEECCCHHHHHHHHHHHHH-cCCcEEEeeCCHHHHHHHHHh------------------------------------
Confidence 4688888888889999998887 677 56666665433222110
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
..+.++++|...+... ..+.++.++........+++.+...... .......
T Consensus 48 --------------------------~~~dlvi~D~~l~~~~-g~~l~~~l~~~~~~~~~~ii~~s~~~~~--~~~~~~~ 98 (128)
T 1jbe_A 48 --------------------------GGYGFVISDWNMPNMD-GLELLKTIRAXXAMSALPVLMVTAEAKK--ENIIAAA 98 (128)
T ss_dssp --------------------------CCCCEEEEESCCSSSC-HHHHHHHHHC--CCTTCCEEEEESSCCH--HHHHHHH
T ss_pred --------------------------cCCCEEEEeCCCCCCC-HHHHHHHHHhhcccCCCcEEEEecCccH--HHHHHHH
Confidence 0134556665543321 2334444444222223445554332211 1122344
Q ss_pred cCccccccccCCCcchHHHHHhhc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
..|.+.++.||+....|.+.++.+
T Consensus 99 ~~ga~~~l~KP~~~~~l~~~i~~~ 122 (128)
T 1jbe_A 99 QAGASGYVVKPFTAATLEEKLNKI 122 (128)
T ss_dssp HTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HhCcCceeecCCCHHHHHHHHHHH
Confidence 578889999999999998887653
No 245
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=75.54 E-value=6.6 Score=37.34 Aligned_cols=116 Identities=15% Similarity=0.083 Sum_probs=68.6
Q ss_pred CeEEEEecChHHHHHHHHHhhhccC--ceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLN--IKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g--~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
.++++++++...+..+..++.. .| ..+..+.+.......+..
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~-~~~~~~v~~~~~~~~al~~l~~----------------------------------- 64 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTL-QPDVESVLQAKNGQEAIQLLEK----------------------------------- 64 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHT-STTEEEEEEESSHHHHHHHHTT-----------------------------------
T ss_pred cEEEEEcCCHHHHHHHHHHHHh-CCCcEEEEEECCHHHHHHHhhc-----------------------------------
Confidence 4678888888899999999987 44 556666666544332211
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
..+.++++|...... +..+.++.++...+ .++++.+..... .......
T Consensus 65 ---------------------------~~~dlii~D~~l~~~-~g~~~~~~l~~~~~--~~~ii~ls~~~~--~~~~~~~ 112 (150)
T 4e7p_A 65 ---------------------------ESVDIAILDVEMPVK-TGLEVLEWIRSEKL--ETKVVVVTTFKR--AGYFERA 112 (150)
T ss_dssp ---------------------------SCCSEEEECSSCSSS-CHHHHHHHHHHTTC--SCEEEEEESCCC--HHHHHHH
T ss_pred ---------------------------cCCCEEEEeCCCCCC-cHHHHHHHHHHhCC--CCeEEEEeCCCC--HHHHHHH
Confidence 113456666654332 22333344444333 344554433221 1122234
Q ss_pred ccCccccccccCCCcchHHHHHhhcc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
...+.+.++.||+....|...+..+.
T Consensus 113 ~~~g~~~~l~Kp~~~~~l~~~i~~~~ 138 (150)
T 4e7p_A 113 VKAGVDAYVLKERSIADLMQTLHTVL 138 (150)
T ss_dssp HHTTCSEEEETTSCHHHHHHHHHHHH
T ss_pred HHCCCcEEEecCCCHHHHHHHHHHHH
Confidence 56788999999999999998887653
No 246
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=75.27 E-value=6.1 Score=37.30 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=31.0
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceE-EEecchhhHHHHH
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKV-TIVKQEKNLHQEL 749 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v-~~~~~~~~~~~~l 749 (1099)
.+.+|++++++...+..+..++....|..+ ..+.+.......+
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l 55 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKL 55 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHH
Confidence 456788888889999999999998447775 3666666544433
No 247
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=74.71 E-value=3.3 Score=41.40 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=31.9
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHH
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQ 747 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~ 747 (1099)
...+|+++++++..+..+..++.. .|+.+..+.+......
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~ 45 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLER-RGYAVRQAHNKDEALK 45 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHH-TTCEEEEECSHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHH-CCCEEEEeCCHHHHHH
Confidence 345788999999999999999998 7898888877765443
No 248
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=74.39 E-value=5.3 Score=38.20 Aligned_cols=117 Identities=11% Similarity=0.137 Sum_probs=69.0
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
+.++++++++...+..+...+.. .|+.+..+.+.......+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l~------------------------------------- 44 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLEL-AGFTVSSFASATEALAGLS------------------------------------- 44 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESCHHHHHHTCC-------------------------------------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH-cCcEEEEECCHHHHHHHHH-------------------------------------
Confidence 45688888889999999999987 7888887766553321110
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
...+.++++|....... ..+++..++...+ .++++.+..... ........
T Consensus 45 -------------------------~~~~dliild~~l~~~~-g~~~~~~l~~~~~--~~pii~ls~~~~--~~~~~~~~ 94 (155)
T 1qkk_A 45 -------------------------ADFAGIVISDIRMPGMD-GLALFRKILALDP--DLPMILVTGHGD--IPMAVQAI 94 (155)
T ss_dssp -------------------------TTCCSEEEEESCCSSSC-HHHHHHHHHHHCT--TSCEEEEECGGG--HHHHHHHH
T ss_pred -------------------------hCCCCEEEEeCCCCCCC-HHHHHHHHHhhCC--CCCEEEEECCCC--hHHHHHHH
Confidence 01134566666543221 2233333333322 344555443221 11222344
Q ss_pred cCccccccccCCCcchHHHHHhhcc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
..+.+.++.||+....|...+..+.
T Consensus 95 ~~g~~~~l~kP~~~~~L~~~i~~~~ 119 (155)
T 1qkk_A 95 QDGAYDFIAKPFAADRLVQSARRAE 119 (155)
T ss_dssp HTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred hcCCCeEEeCCCCHHHHHHHHHHHH
Confidence 5788899999999999998887543
No 249
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=74.07 E-value=13 Score=36.00 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=28.0
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceE-EEecchhhHHHHH
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKV-TIVKQEKNLHQEL 749 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v-~~~~~~~~~~~~l 749 (1099)
..+|+++++++..+..+..++....+..+ ..+.+.......+
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l 67 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKA 67 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHH
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHh
Confidence 34688888888899999999987334333 3555555444433
No 250
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=73.80 E-value=6.8 Score=39.97 Aligned_cols=89 Identities=7% Similarity=0.020 Sum_probs=36.9
Q ss_pred HHHhcCCEEEEEecCCCceeEEEEEEEecccccccCCCCCCCCCCCCCCCCCCcccccchhhhcccccccCCCeEEEEec
Q 001330 637 MVHLMKGEIAIADKEPGERGVCFRFNVLLTAVCERERPDTDEEDPRTHNDWPQTGLHQHFASFWGSAAKSEGSQMILFIA 716 (1099)
Q Consensus 637 lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~v~l~~~ 716 (1099)
-+.+|||+|+|+|.. |+||+|+|.+|+........ . ..+. ......+.+|+++++
T Consensus 15 ~~~~hgG~i~v~S~~--g~Gs~f~~~lP~~~~~~~~~---~-~~~~-------------------~~~~~~~~~ILiVdD 69 (206)
T 3mm4_A 15 PRGSHMASTDSESET--RVKSVRTGRKPIGNPEDEQE---T-SKPS-------------------DDEFLRGKRVLVVDD 69 (206)
T ss_dssp C----------------------------------------------------------------CTTTTTTCEEEEECS
T ss_pred cccccCCceeeeccC--CCcceeeeccCCCCCccccc---c-cCCC-------------------cccccCCCEEEEEeC
Confidence 357899999998765 58999999999854211110 0 0000 001125568999999
Q ss_pred ChHHHHHHHHHhhhccCc-eEEEecchhhHHHHHHH
Q 001330 717 GEERRRVLKRYIENSLNI-KVTIVKQEKNLHQELRK 751 (1099)
Q Consensus 717 ~~~~~~~l~~~l~~~~g~-~v~~~~~~~~~~~~l~~ 751 (1099)
++..+..+..++.. .|+ .+..+.+.......+..
T Consensus 70 d~~~~~~l~~~L~~-~g~~~v~~a~~~~eal~~l~~ 104 (206)
T 3mm4_A 70 NFISRKVATGKLKK-MGVSEVEQCDSGKEALRLVTE 104 (206)
T ss_dssp CHHHHHHHHHHHHH-TTCSEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-cCCCeeeeeCCHHHHHHHHHh
Confidence 99999999999998 687 88888888766655543
No 251
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=73.43 E-value=15 Score=37.56 Aligned_cols=115 Identities=13% Similarity=0.140 Sum_probs=71.0
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.+++++++++..+..+...+.. .|+.+..+.+.......+...
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~~~~~------------------------------------ 50 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRL-SGFEVATAVDGAEALRSATEN------------------------------------ 50 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHS------------------------------------
T ss_pred CeEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhC------------------------------------
Confidence 4688888899999999999988 788888777766544333211
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+.. +..+.++.++...+ .++++.+..... .........
T Consensus 51 --------------------------~~dlvllD~~l~~~-~g~~~~~~l~~~~~--~~~ii~lt~~~~--~~~~~~~~~ 99 (233)
T 1ys7_A 51 --------------------------RPDAIVLDINMPVL-DGVSVVTALRAMDN--DVPVCVLSARSS--VDDRVAGLE 99 (233)
T ss_dssp --------------------------CCSEEEEESSCSSS-CHHHHHHHHHHTTC--CCCEEEEECCCT--TTCCCTTTT
T ss_pred --------------------------CCCEEEEeCCCCCC-CHHHHHHHHHhcCC--CCCEEEEEcCCC--HHHHHHHHH
Confidence 12455666554322 12233334433333 344554443221 122234556
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.+.+.++.||+....|...++.+
T Consensus 100 ~ga~~~l~Kp~~~~~L~~~i~~~ 122 (233)
T 1ys7_A 100 AGADDYLVKPFVLAELVARVKAL 122 (233)
T ss_dssp TTCSEEEESSCCHHHHHHHHHHH
T ss_pred cCCCEEEeCCCCHHHHHHHHHHH
Confidence 78899999999999998888754
No 252
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=73.11 E-value=20 Score=33.26 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=29.5
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHH
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQ 747 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~ 747 (1099)
.+++++++++..+..+...++. .|..+..+.+......
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~-~~~~v~~~~~~~~al~ 48 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEK-CTNDITVVTNGLQALQ 48 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTT-TCSEEEEESSHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHH-cCCceEEECCHHHHHH
Confidence 4688888888889999999887 6888887776655443
No 253
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=73.09 E-value=12 Score=34.83 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=30.3
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHH
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQEL 749 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l 749 (1099)
++++++++...+..+..++.. .|+.+..+.+.......+
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l 44 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKD-EPYDIFHVETGRDAIQFI 44 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTT-SSSEEEEESSHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHh-cCceEEEeCCHHHHHHHH
Confidence 688888888889999999987 788888777766554443
No 254
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=72.82 E-value=15 Score=33.06 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=29.0
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHH
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQ 747 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~ 747 (1099)
.+++++++++..+..+..++.. .|..+..+.+......
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~~~~~~~ 40 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQ-EGYTVSVTASGAGLRE 40 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-TTCEEEEESSHHHHHH
T ss_pred cEEEEEECCHHHHHHHHHHHHH-CCCeEEEecCHHHHHH
Confidence 3578888888889999999887 7888877776654433
No 255
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=72.76 E-value=13 Score=37.89 Aligned_cols=115 Identities=13% Similarity=0.129 Sum_probs=70.8
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
+++++++++..+..+...+.. .|..+..+.+.......+...
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~~~~~------------------------------------- 45 (225)
T 1kgs_A 4 RVLVVEDERDLADLITEALKK-EMFTVDVCYDGEEGMYMALNE------------------------------------- 45 (225)
T ss_dssp EEEEECSSHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHS-------------------------------------
T ss_pred eEEEEeCCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHhcC-------------------------------------
Confidence 678888888999999999988 788888777665544333211
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
.+.++++|...+... ..+.++.++...+ .++++.+..... ..........
T Consensus 46 -------------------------~~dlvllD~~l~~~~-g~~~~~~lr~~~~--~~~ii~ls~~~~--~~~~~~~~~~ 95 (225)
T 1kgs_A 46 -------------------------PFDVVILDIMLPVHD-GWEILKSMRESGV--NTPVLMLTALSD--VEYRVKGLNM 95 (225)
T ss_dssp -------------------------CCSEEEEESCCSSSC-HHHHHHHHHHTTC--CCCEEEEESSCH--HHHHHHTCCC
T ss_pred -------------------------CCCEEEEeCCCCCCC-HHHHHHHHHhcCC--CCCEEEEeCCCC--HHHHHHHHhC
Confidence 124556665543221 2233344443333 344555443221 1222345568
Q ss_pred ccccccccCCCcchHHHHHhhcc
Q 001330 870 ICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
|.+.++.||+....|...+..+.
T Consensus 96 ga~~~l~Kp~~~~~l~~~i~~~~ 118 (225)
T 1kgs_A 96 GADDYLPKPFDLRELIARVRALI 118 (225)
T ss_dssp CCSEEEESSCCHHHHHHHHHHHH
T ss_pred CccEEEeCCCCHHHHHHHHHHHH
Confidence 88999999999999988887543
No 256
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=72.31 E-value=16 Score=33.92 Aligned_cols=121 Identities=12% Similarity=0.218 Sum_probs=71.3
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCc-eEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNI-KVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~-~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
.+++++++++..+..+..+++. .|. .+..+.+.......++.....
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~-~g~~~v~~~~~~~~al~~~~~~~~~-------------------------------- 49 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNL-EGIENIELACDGQEAFDKVKELTSK-------------------------------- 49 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHH-TTCCCEEEESSHHHHHHHHHHHHHH--------------------------------
T ss_pred ceEEEEcCCHHHHHHHHHHHHH-cCCceEEEECCHHHHHHHHHHHHhc--------------------------------
Confidence 3588888889999999999987 676 467777766555544432100
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
...+.++++|...+... ..+.++.++...+ ...+++.+...... .......
T Consensus 50 -------------------------~~~~dlvllD~~mp~~~-G~~~~~~lr~~~~-~~~~ii~lt~~~~~--~~~~~~~ 100 (133)
T 2r25_B 50 -------------------------GENYNMIFMDVQMPKVD-GLLSTKMIRRDLG-YTSPIVALTAFADD--SNIKECL 100 (133)
T ss_dssp -------------------------TCCCSEEEECSCCSSSC-HHHHHHHHHHHSC-CCSCEEEEESCCSH--HHHHHHH
T ss_pred -------------------------CCCCCEEEEeCCCCCCC-hHHHHHHHHhhcC-CCCCEEEEECCCCH--HHHHHHH
Confidence 01134566666554322 2233344433211 12345554432211 1222345
Q ss_pred cCccccccccCCCcchHHHHHhhc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
..|.+.++.||+....|.+.++.+
T Consensus 101 ~~ga~~~l~KP~~~~~L~~~l~~~ 124 (133)
T 2r25_B 101 ESGMNGFLSKPIKRPKLKTILTEF 124 (133)
T ss_dssp HTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HcCCCEEEeCCCCHHHHHHHHHHH
Confidence 578899999999999999988754
No 257
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=72.14 E-value=11 Score=35.68 Aligned_cols=118 Identities=10% Similarity=0.071 Sum_probs=69.5
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEE-EecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVT-IVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
..++++++++...+..+..++....|+.+. .+.+.......+...
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~---------------------------------- 50 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRET---------------------------------- 50 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTT----------------------------------
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcC----------------------------------
Confidence 346888888889999999999875687776 566655443332211
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
.+.++++|....... ..+.++.++...+. ++++.+..... .......
T Consensus 51 ----------------------------~~dlii~D~~l~~~~-g~~~~~~l~~~~~~--~~ii~ls~~~~--~~~~~~~ 97 (153)
T 3cz5_A 51 ----------------------------TPDIVVMDLTLPGPG-GIEATRHIRQWDGA--ARILIFTMHQG--SAFALKA 97 (153)
T ss_dssp ----------------------------CCSEEEECSCCSSSC-HHHHHHHHHHHCTT--CCEEEEESCCS--HHHHHHH
T ss_pred ----------------------------CCCEEEEecCCCCCC-HHHHHHHHHHhCCC--CeEEEEECCCC--HHHHHHH
Confidence 134556665543221 22333333333332 33444433211 1122234
Q ss_pred ccCccccccccCCCcchHHHHHhhcc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
...+.+.++.||+....|...++.+.
T Consensus 98 ~~~g~~~~l~kp~~~~~L~~~i~~~~ 123 (153)
T 3cz5_A 98 FEAGASGYVTKSSDPAELVQAIEAIL 123 (153)
T ss_dssp HHTTCSEEEETTSCTTHHHHHHHHHT
T ss_pred HHCCCcEEEecCCCHHHHHHHHHHHH
Confidence 55788899999999999999987653
No 258
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=71.93 E-value=19 Score=33.41 Aligned_cols=115 Identities=16% Similarity=0.149 Sum_probs=66.2
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCce-EEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIK-VTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~-v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
..+++++++++..+..+...+....|+. +..+.+.......+...
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~---------------------------------- 54 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHN---------------------------------- 54 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHC----------------------------------
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----------------------------------
Confidence 3568888888999999999998744666 33555555433332211
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
.+.++++|...... +..++++.++...+ ...++.+.... ......
T Consensus 55 ----------------------------~~dlvi~d~~l~~~-~g~~~~~~l~~~~~--~~~ii~~s~~~----~~~~~~ 99 (143)
T 2qv0_A 55 ----------------------------KVDAIFLDINIPSL-DGVLLAQNISQFAH--KPFIVFITAWK----EHAVEA 99 (143)
T ss_dssp ----------------------------CCSEEEECSSCSSS-CHHHHHHHHTTSTT--CCEEEEEESCC----TTHHHH
T ss_pred ----------------------------CCCEEEEecCCCCC-CHHHHHHHHHccCC--CceEEEEeCCH----HHHHHH
Confidence 12455666544322 12233344443222 23344443321 112234
Q ss_pred ccCccccccccCCCcchHHHHHhhc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
...+.+.++.||+....|...+..+
T Consensus 100 ~~~g~~~~l~KP~~~~~l~~~i~~~ 124 (143)
T 2qv0_A 100 FELEAFDYILKPYQESRIINMLQKL 124 (143)
T ss_dssp HHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HhCCcceEEeCCCCHHHHHHHHHHH
Confidence 4577889999999999998888754
No 259
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=71.71 E-value=6.6 Score=35.81 Aligned_cols=116 Identities=13% Similarity=0.147 Sum_probs=67.7
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
++++++++...+..+...+.. .|+.+..+.+...... .+
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~-~g~~v~~~~~~~~a~~---~~------------------------------------- 42 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQ-NGFQPVEAEDYDSAVN---QL------------------------------------- 42 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHH-TTCEEEEECSHHHHHT---TC-------------------------------------
T ss_pred EEEEEcCCHHHHHHHHHHHHH-CCceEEEeCCHHHHHH---HH-------------------------------------
Confidence 578888888889999998887 6887776655443211 00
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
....+.++++|...+... ..+.++..+........+++.+...... .........
T Consensus 43 ----------------------~~~~~dlvi~D~~l~~~~-g~~~~~~l~~~~~~~~~~ii~~s~~~~~--~~~~~~~~~ 97 (127)
T 2jba_A 43 ----------------------NEPWPDLILLAWMLPGGS-GIQFIKHLRRESMTRDIPVVMLTARGEE--EDRVRGLET 97 (127)
T ss_dssp ----------------------SSSCCSEEEEESEETTEE-HHHHHHHHHTSTTTTTSCEEEEEETTHH--HHHHTTCCC
T ss_pred ----------------------hccCCCEEEEecCCCCCC-HHHHHHHHHhCcccCCCCEEEEeCCCCH--HHHHHHHhc
Confidence 001134566665543322 2344444444332223455554432211 122345567
Q ss_pred ccccccccCCCcchHHHHHhhc
Q 001330 870 ICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
|.+.++.||+....|...++.+
T Consensus 98 ga~~~l~Kp~~~~~l~~~i~~~ 119 (127)
T 2jba_A 98 GADDCITKPFSPKELVARIKAV 119 (127)
T ss_dssp SCSEEEEESCCHHHHHHHHHHH
T ss_pred CCCeEEeCCCCHHHHHHHHHHH
Confidence 8889999999999998888654
No 260
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=71.26 E-value=13 Score=34.53 Aligned_cols=38 Identities=11% Similarity=0.274 Sum_probs=29.8
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHH
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQ 747 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~ 747 (1099)
.+++++++++..+..+..++.. .|+.+..+.+......
T Consensus 5 ~~Ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~ 42 (136)
T 2qzj_A 5 TKILIIDGDKDNCQKLKGFLEE-KGISIDLAYNCEEAIG 42 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT-TTCEEEEESSHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHH-CCCEEEEECCHHHHHH
Confidence 4688888888899999999987 7888877776655443
No 261
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=71.03 E-value=20 Score=36.05 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=69.3
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEE-EecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVT-IVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
.+++++++++..+..+..++.. .|+.+. .+.+.......+...
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~~al~~~~~~----------------------------------- 57 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLRE-EGYEIVGEAGDGQEAVELAELH----------------------------------- 57 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHH-----------------------------------
T ss_pred ccEEEEECCHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHhhc-----------------------------------
Confidence 4788899999999999999987 788876 677666554433321
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
.+.++++|...+... ....++..+...+ .+++.+..... ........
T Consensus 58 ---------------------------~~dlvi~D~~~p~~~-g~~~~~~l~~~~~---~pii~lt~~~~--~~~~~~~~ 104 (205)
T 1s8n_A 58 ---------------------------KPDLVIMDVKMPRRD-GIDAASEIASKRI---APIVVLTAFSQ--RDLVERAR 104 (205)
T ss_dssp ---------------------------CCSEEEEESSCSSSC-HHHHHHHHHHTTC---SCEEEEEEGGG--HHHHHTTG
T ss_pred ---------------------------CCCEEEEeCCCCCCC-hHHHHHHHHhcCC---CCEEEEecCCC--HHHHHHHH
Confidence 123555565443221 2233333333322 24454433221 12223455
Q ss_pred cCccccccccCCCcchHHHHHhhc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
..|.+.++.||+....|...+..+
T Consensus 105 ~~ga~~~l~KP~~~~~L~~~i~~~ 128 (205)
T 1s8n_A 105 DAGAMAYLVKPFSISDLIPAIELA 128 (205)
T ss_dssp GGSCEEEEEESCCHHHHHHHHHHH
T ss_pred hcCCcEEEeCCCCHHHHHHHHHHH
Confidence 678889999999999998888654
No 262
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=71.02 E-value=2.2 Score=39.96 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=27.5
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccC-ceEEEecchh
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLN-IKVTIVKQEK 743 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g-~~v~~~~~~~ 743 (1099)
..+++++++++..+..+..++.. .| +.+..+.+..
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~-~g~~~v~~~~~~~ 49 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDA-LAIYDVRVSETDD 49 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHH-TSSEEEEEECGGG
T ss_pred CcEEEEEcCCHHHHHHHHHHHhh-cCCeEEEEeccHH
Confidence 34688888888999999999988 67 7777665554
No 263
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=70.89 E-value=13 Score=34.43 Aligned_cols=42 Identities=2% Similarity=0.004 Sum_probs=34.2
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHH
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQEL 749 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l 749 (1099)
.+.++++++++...+..+...+.. .|+.+..+.+.......+
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~l 58 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNV-KGFMADVTESLEDGEYLM 58 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHH-TTCEEEEESCHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHH-cCcEEEEeCCHHHHHHHH
Confidence 567889999999999999999998 899988888776655444
No 264
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=69.89 E-value=16 Score=32.96 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=29.3
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHH
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQ 747 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~ 747 (1099)
.+++++++++..+..+...++. .|+.+..+.+......
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~~~~~a~~ 41 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEA-EGYDVFEATDGAEMHQ 41 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT-TTCEEEEESSHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHhh-CCcEEEEeCCHHHHHH
Confidence 3678888888889999999987 7888877776655443
No 265
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=69.83 E-value=11 Score=38.08 Aligned_cols=116 Identities=9% Similarity=0.108 Sum_probs=70.4
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
..+++++++++..+..+..++.. .|+.+..+.+..... ..+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al---~~~~---------------------------------- 45 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRS-AGFEVETFDCASTFL---EHRR---------------------------------- 45 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHT-TTCEEEEESSHHHHH---HHCC----------------------------------
T ss_pred CCEEEEEcCCHHHHHHHHHHHHh-CCceEEEcCCHHHHH---Hhhh----------------------------------
Confidence 34688888999999999999987 788887776654332 2110
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
...+.++++|...+.. +..+.++.++...+ .++++.+..... ........
T Consensus 46 -------------------------~~~~dlvl~D~~lp~~-~g~~~~~~l~~~~~--~~~ii~ls~~~~--~~~~~~a~ 95 (208)
T 1yio_A 46 -------------------------PEQHGCLVLDMRMPGM-SGIELQEQLTAISD--GIPIVFITAHGD--IPMTVRAM 95 (208)
T ss_dssp -------------------------TTSCEEEEEESCCSSS-CHHHHHHHHHHTTC--CCCEEEEESCTT--SCCCHHHH
T ss_pred -------------------------ccCCCEEEEeCCCCCC-CHHHHHHHHHhcCC--CCCEEEEeCCCC--HHHHHHHH
Confidence 0113566677655432 12233444443333 344555443322 12223445
Q ss_pred cCccccccccCCCcchHHHHHhhc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
..|.+.++.||+....|...+..+
T Consensus 96 ~~Ga~~~l~Kp~~~~~L~~~i~~~ 119 (208)
T 1yio_A 96 KAGAIEFLPKPFEEQALLDAIEQG 119 (208)
T ss_dssp HTTEEEEEESSCCHHHHHHHHHHH
T ss_pred HCCCcEEEeCCCCHHHHHHHHHHH
Confidence 678899999999999998888654
No 266
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=69.70 E-value=16 Score=33.74 Aligned_cols=115 Identities=11% Similarity=0.111 Sum_probs=65.3
Q ss_pred eEEEEecChHHHHHHHHHhhhccC-ceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLN-IKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g-~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
+++++++++..+..+...++...+ ..+..+.+.......+...
T Consensus 5 ~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~------------------------------------ 48 (133)
T 3b2n_A 5 SLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEY------------------------------------ 48 (133)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHH------------------------------------
T ss_pred EEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhc------------------------------------
Confidence 578888888889999998887333 3445555555443333221
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+... ..+.++..+...+ ..+++.+...... ........
T Consensus 49 --------------------------~~dlvilD~~lp~~~-g~~~~~~l~~~~~--~~~ii~ls~~~~~--~~~~~~~~ 97 (133)
T 3b2n_A 49 --------------------------NPNVVILDIEMPGMT-GLEVLAEIRKKHL--NIKVIIVTTFKRP--GYFEKAVV 97 (133)
T ss_dssp --------------------------CCSEEEECSSCSSSC-HHHHHHHHHHTTC--SCEEEEEESCCCH--HHHHHHHH
T ss_pred --------------------------CCCEEEEecCCCCCC-HHHHHHHHHHHCC--CCcEEEEecCCCH--HHHHHHHH
Confidence 123555565443221 2233333333322 3455554432211 12223445
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.+.+.++.||+....|...++.+
T Consensus 98 ~ga~~~l~Kp~~~~~L~~~i~~~ 120 (133)
T 3b2n_A 98 NDVDAYVLKERSIEELVETINKV 120 (133)
T ss_dssp TTCSEEEETTSCHHHHHHHHHHH
T ss_pred cCCcEEEECCCCHHHHHHHHHHH
Confidence 78889999999999999888754
No 267
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=69.37 E-value=26 Score=36.90 Aligned_cols=84 Identities=12% Similarity=0.020 Sum_probs=59.4
Q ss_pred HHHHHHHhhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC------CCCCCHHHHHHHHhccccccCC
Q 001330 976 KVTSAVLGKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE------MPVMNGWEATRLIRKEEEQYDV 1048 (1099)
Q Consensus 976 ~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~------MP~mdG~e~~r~IR~~~~~~~~ 1048 (1099)
.-+.+.+.+.|..+. .+.+.++|..... ..+|+|..-.. .+...++++++++++.
T Consensus 119 ~~~i~~~~~~g~~v~~~v~t~eea~~a~~------------~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~------ 180 (232)
T 3igs_A 119 EALLARIHHHHLLTMADCSSVDDGLACQR------------LGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA------ 180 (232)
T ss_dssp HHHHHHHHHTTCEEEEECCSHHHHHHHHH------------TTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT------
T ss_pred HHHHHHHHHCCCEEEEeCCCHHHHHHHHh------------CCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc------
Confidence 334444566687654 5678888766553 25788853221 1234468999999852
Q ss_pred CccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1049 HIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1049 ~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
++|+|+-.+-.+.++..+++++|+++++.
T Consensus 181 ~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 181 GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 58999999988999999999999999864
No 268
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=69.08 E-value=20 Score=32.72 Aligned_cols=39 Identities=10% Similarity=0.004 Sum_probs=30.6
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHH
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQ 747 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~ 747 (1099)
..++++++++...+..+...+.. .|+.+..+.+......
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~ 43 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTD-AGFLVTAVSSGAKAIE 43 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHH-TTCEEEEESSHHHHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHH-cCCEEEEECCHHHHHH
Confidence 45788888889999999999986 7888887776654443
No 269
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=68.35 E-value=15 Score=38.55 Aligned_cols=116 Identities=12% Similarity=0.150 Sum_probs=74.9
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
..+|+++++++..+..+..+++. .|..+..+.+.......+...
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~~~~~----------------------------------- 80 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTD-AGYVVDHADSAMNGLIKARED----------------------------------- 80 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHT-TTCEEEEESSHHHHHHHHHHS-----------------------------------
T ss_pred CCEEEEEECCHHHHHHHHHHHHH-CCCEEEEeCCHHHHHHHHhcC-----------------------------------
Confidence 35788899999999999999987 688888777766544333211
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
.+.++++|...+. .+..+.++.++. .+ .++++.+..... ........
T Consensus 81 ---------------------------~~DlvllD~~lp~-~~G~~l~~~lr~-~~--~~~iI~lt~~~~--~~~~~~a~ 127 (249)
T 3q9s_A 81 ---------------------------HPDLILLDLGLPD-FDGGDVVQRLRK-NS--ALPIIVLTARDT--VEEKVRLL 127 (249)
T ss_dssp ---------------------------CCSEEEEECCSCH-HHHHHHHHHHHT-TC--CCCEEEEESCCS--HHHHHHHH
T ss_pred ---------------------------CCCEEEEcCCCCC-CCHHHHHHHHHc-CC--CCCEEEEECCCC--HHHHHHHH
Confidence 1356677766543 344555555554 23 344555443221 12223445
Q ss_pred cCccccccccCCCcchHHHHHhhcc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
..+.+.++.||+....|...++.+.
T Consensus 128 ~~Ga~~yl~Kp~~~~~L~~~i~~~l 152 (249)
T 3q9s_A 128 GLGADDYLIKPFHPDELLARVKVQL 152 (249)
T ss_dssp HHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HCCCcEEEECCCCHHHHHHHHHHHH
Confidence 5788999999999999998887553
No 270
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=67.63 E-value=7.8 Score=35.66 Aligned_cols=118 Identities=9% Similarity=0.110 Sum_probs=70.7
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.++++++++...+..+..++... +..+..+.+.+.....
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~---------------------------------------- 42 (135)
T 3eqz_A 4 NRVFIVDDDTLTCNLLKTIVEPI-FGNVEAFQHPRAFLTL---------------------------------------- 42 (135)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-CSCEEEESCHHHHTTS----------------------------------------
T ss_pred ceEEEEeCCHHHHHHHHHHHHhh-cceeeeecCHHHHHHh----------------------------------------
Confidence 46888888888999999998884 6666666554421100
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhc---ccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIR---NAHSREY 865 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~ 865 (1099)
.... +.++++|...... +..+.++.++...+. .+++.+...... .......
T Consensus 43 ----------------------~~~~-~dlvi~D~~l~~~-~g~~~~~~l~~~~~~--~~ii~~s~~~~~~~~~~~~~~~ 96 (135)
T 3eqz_A 43 ----------------------SLNK-QDIIILDLMMPDM-DGIEVIRHLAEHKSP--ASLILISGYDSGVLHSAETLAL 96 (135)
T ss_dssp ----------------------CCCT-TEEEEEECCTTTT-HHHHHHHHHHHTTCC--CEEEEEESSCHHHHHHHHHHHH
T ss_pred ----------------------hccC-CCEEEEeCCCCCC-CHHHHHHHHHhCCCC--CCEEEEEeccchhHHHHHHHHH
Confidence 0011 4677888766543 334455555554433 344444332211 0111223
Q ss_pred cccCccccccccCCCcchHHHHHhhccc
Q 001330 866 RLLPICDHVISRPFHGSRLIEVLKLLPE 893 (1099)
Q Consensus 866 ~~~~~~~~~~~kP~~~~~L~~~l~~l~~ 893 (1099)
....+.+.++.||+....|.+.++.+..
T Consensus 97 ~~~~g~~~~l~KP~~~~~l~~~l~~~~~ 124 (135)
T 3eqz_A 97 SCGLNVINTFTKPINTEVLTCFLTSLSN 124 (135)
T ss_dssp HTTCEEEEEEESSCCHHHHHHHHHHHSC
T ss_pred HcCCCcceeeCCCCCHHHHHHHHHHHHh
Confidence 4456778899999999999999987643
No 271
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=67.36 E-value=20 Score=37.01 Aligned_cols=115 Identities=11% Similarity=0.182 Sum_probs=71.8
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.+++++++++..+..+..++.. .|+.+..+.+.......+...
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~l~~~------------------------------------ 48 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRG-EGFDTAVIGDGTQALTAVREL------------------------------------ 48 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEECCGGGHHHHHHHH------------------------------------
T ss_pred CeEEEEeCCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHhC------------------------------------
Confidence 4688888899999999999987 788888877776555444322
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+... ..+.++.++.. + .++++.+..... .........
T Consensus 49 --------------------------~~dlvilD~~l~~~~-g~~~~~~lr~~-~--~~~ii~lt~~~~--~~~~~~~~~ 96 (238)
T 2gwr_A 49 --------------------------RPDLVLLDLMLPGMN-GIDVCRVLRAD-S--GVPIVMLTAKTD--TVDVVLGLE 96 (238)
T ss_dssp --------------------------CCSEEEEESSCSSSC-HHHHHHHHHTT-C--CCCEEEEEETTC--CSCHHHHHH
T ss_pred --------------------------CCCEEEEeCCCCCCC-HHHHHHHHHhC-C--CCcEEEEeCCCC--HHHHHHHHH
Confidence 124555665543221 22333344332 2 345555443221 122234456
Q ss_pred CccccccccCCCcchHHHHHhhcc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
.+.+.++.||+....|...++.+.
T Consensus 97 ~Ga~~~l~Kp~~~~~L~~~i~~~~ 120 (238)
T 2gwr_A 97 SGADDYIMKPFKPKELVARVRARL 120 (238)
T ss_dssp TTCCEEEEESCCHHHHHHHHHHHC
T ss_pred CCCCEEEeCCCCHHHHHHHHHHHH
Confidence 788999999999999999887653
No 272
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=67.23 E-value=26 Score=31.97 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=28.1
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEE-EecchhhHHHHH
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVT-IVKQEKNLHQEL 749 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~-~~~~~~~~~~~l 749 (1099)
+++++++++..+..+..++....|+.+. .+.+.......+
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~ 44 (130)
T 1dz3_A 4 KVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQML 44 (130)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence 5788888888899999999884477654 555555444433
No 273
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=65.05 E-value=19 Score=36.47 Aligned_cols=117 Identities=14% Similarity=0.115 Sum_probs=68.9
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceE-EEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKV-TIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
.+++++++++..+..+..+++...++.+ ..+.+.......+...
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~----------------------------------- 50 (215)
T 1a04_A 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL----------------------------------- 50 (215)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHH-----------------------------------
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhc-----------------------------------
Confidence 4688888888899999999987445666 5666665544333221
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
.+.++++|...+.. +..+.++.++...+. ++++.+..... ........
T Consensus 51 ---------------------------~~dlvllD~~lp~~-~g~~~~~~lr~~~~~--~~ii~ls~~~~--~~~~~~~~ 98 (215)
T 1a04_A 51 ---------------------------DPDLILLDLNMPGM-NGLETLDKLREKSLS--GRIVVFSVSNH--EEDVVTAL 98 (215)
T ss_dssp ---------------------------CCSEEEEETTSTTS-CHHHHHHHHHHSCCC--SEEEEEECCCC--HHHHHHHH
T ss_pred ---------------------------CCCEEEEeCCCCCC-cHHHHHHHHHHhCCC--CcEEEEECCCC--HHHHHHHH
Confidence 12455566554322 123334444443332 34444433211 11222345
Q ss_pred cCccccccccCCCcchHHHHHhhcc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
..|.+.++.||+....|...+..+.
T Consensus 99 ~~Ga~~~l~Kp~~~~~L~~~i~~~~ 123 (215)
T 1a04_A 99 KRGADGYLLKDMEPEDLLKALHQAA 123 (215)
T ss_dssp HTTCSEEEETTCCHHHHHHHHHHHH
T ss_pred HcCCcEEEeCCCCHHHHHHHHHHHH
Confidence 5788999999999999998887553
No 274
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=65.01 E-value=23 Score=31.51 Aligned_cols=38 Identities=5% Similarity=0.106 Sum_probs=28.9
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHH
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQE 748 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~ 748 (1099)
++++++++...+..+...+.. .|..+..+.+.......
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~~~~~a~~~ 40 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTK-EGYEVVTAFNGREALEQ 40 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHh-cCcEEEEecCHHHHHHH
Confidence 578888888889999998887 68888777766554433
No 275
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=64.60 E-value=26 Score=32.25 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=29.7
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhh
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKN 744 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~ 744 (1099)
.+.+++++++++..+..+...+.. .|..+..+.+...
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~ 42 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVH-LGCEVTTVSSNEE 42 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHH-cCCeEEEeCCHHH
Confidence 456789999999999999999987 7888877766553
No 276
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=63.95 E-value=77 Score=33.66 Aligned_cols=111 Identities=12% Similarity=0.066 Sum_probs=72.3
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-CCH-
Q 001330 962 GKKFLVV----EDDAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-MNG- 1032 (1099)
Q Consensus 962 ~~~ILvV----dDd~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-mdG- 1032 (1099)
+.+||++ |-+..-..++..+|+..||+|... ...++.++.+.+ ..||+|.+-..|+. +..
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~-----------~~~d~V~lS~l~~~~~~~~ 191 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQK-----------EKPIMLTGTALMTTTMYAF 191 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHH-----------HCCSEEEEECCCTTTTTHH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------cCCCEEEEEeeccCCHHHH
Confidence 4578887 667788889999999999998643 345555566543 37999999988764 333
Q ss_pred HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~ 1093 (1099)
-++++.+|+. +.++||++--+....+. +.+.|+|.|-.-. .+..+.+++++
T Consensus 192 ~~~i~~l~~~----~~~~~v~vGG~~~~~~~---~~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 192 KEVNDMLLEN----GIKIPFACGGGAVNQDF---VSQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp HHHHHHHHTT----TCCCCEEEESTTCCHHH---HHTSTTEEECSST---THHHHHHHHHH
T ss_pred HHHHHHHHhc----CCCCcEEEECccCCHHH---HHHcCCeEEECCH---HHHHHHHHHHH
Confidence 3566777764 23477766554444332 3478988776533 44445555443
No 277
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=63.36 E-value=90 Score=38.51 Aligned_cols=118 Identities=11% Similarity=0.012 Sum_probs=80.1
Q ss_pred CEEEEE----eCCHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-CC-HH
Q 001330 963 KKFLVV----EDDAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-MN-GW 1033 (1099)
Q Consensus 963 ~~ILvV----dDd~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-md-G~ 1033 (1099)
.+|++. |.+..-..++..+|+..||+|..- ...++.++.+.+ ..+|+|.+-..|.. +. .-
T Consensus 605 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e-----------~~adiVglSsl~~~~~~~~~ 673 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVD-----------ADVHAVGVSTLAAGHKTLVP 673 (762)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH-----------TTCSEEEEEECSSCHHHHHH
T ss_pred CEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHH-----------cCCCEEEEeeecHHHHHHHH
Confidence 467776 455666778888999999999764 356777777753 36899999887742 22 34
Q ss_pred HHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1034 EATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1034 e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
++++.||+... .+++| ++-+.....+...+.+.|+|+|...--+..+....+...++.
T Consensus 674 ~vi~~Lr~~G~---~dv~V-ivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~ 731 (762)
T 2xij_A 674 ELIKELNSLGR---PDILV-MCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEK 731 (762)
T ss_dssp HHHHHHHHTTC---TTSEE-EEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC---CCCEE-EEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHH
Confidence 56677776422 23444 344434444566788999999998666887877777776644
No 278
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=63.09 E-value=21 Score=33.68 Aligned_cols=124 Identities=11% Similarity=0.108 Sum_probs=69.0
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCc--eEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNI--KVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~--~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
.+++++++++..+..++..++. .|. .+..+.+.......++.....
T Consensus 9 ~~ILivdd~~~~~~~l~~~L~~-~~~~~~v~~~~~~~~al~~l~~~~~~------------------------------- 56 (149)
T 1i3c_A 9 KVILLVEDSKADSRLVQEVLKT-STIDHELIILRDGLAAMAFLQQQGEY------------------------------- 56 (149)
T ss_dssp EEEEEECCCHHHHHHHHHHHHS-CCSCEEEEEECSHHHHHHHHTTCGGG-------------------------------
T ss_pred CeEEEEECCHHHHHHHHHHHHh-cCCCccEEEeCCHHHHHHHHHhcccc-------------------------------
Confidence 4678888888899999999987 554 666666655433322110000
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
.....+.++++|....... ..+.++.++.......++++.+...... ......
T Consensus 57 ------------------------~~~~~~dlillD~~lp~~~-g~~l~~~l~~~~~~~~~piiils~~~~~--~~~~~~ 109 (149)
T 1i3c_A 57 ------------------------ENSPRPNLILLDLNLPKKD-GREVLAEIKQNPDLKRIPVVVLTTSHNE--DDVIAS 109 (149)
T ss_dssp ------------------------TTCCCCSEEEECSCCSSSC-HHHHHHHHHHCTTTTTSCEEEEESCCCH--HHHHHH
T ss_pred ------------------------ccCCCCCEEEEeCCCCCCc-HHHHHHHHHhCcCcCCCeEEEEECCCCh--HHHHHH
Confidence 0001235677776654322 2334444443321123455554432211 112234
Q ss_pred ccCccccccccCCCcchHHHHHhhc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
...+.+.++.||+....|...++.+
T Consensus 110 ~~~ga~~~l~KP~~~~~L~~~i~~~ 134 (149)
T 1i3c_A 110 YELHVNCYLTKSRNLKDLFKMVQGI 134 (149)
T ss_dssp HHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred HHcCCcEEEECCCCHHHHHHHHHHH
Confidence 4578889999999999998888754
No 279
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=63.04 E-value=15 Score=34.79 Aligned_cols=117 Identities=18% Similarity=0.145 Sum_probs=65.2
Q ss_pred eEEEEecChHHHHHHHHHhhhccCc-eEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNI-KVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~-~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
++++++++...+..+...+....|. .+..+.+.......+..-
T Consensus 5 ~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~------------------------------------ 48 (154)
T 2qsj_A 5 VVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEAD------------------------------------ 48 (154)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTT------------------------------------
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhcc------------------------------------
Confidence 5788888889999999999885476 566776665544333210
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
..+.++++|...... +..+.++.++...+ .++++.+..... .........
T Consensus 49 -------------------------~~~dlvi~d~~l~~~-~g~~~~~~l~~~~~--~~~ii~ls~~~~--~~~~~~~~~ 98 (154)
T 2qsj_A 49 -------------------------NTVDLILLDVNLPDA-EAIDGLVRLKRFDP--SNAVALISGETD--HELIRAALE 98 (154)
T ss_dssp -------------------------CCCSEEEECC-------CHHHHHHHHHHCT--TSEEEEC-------CHHHHHHHH
T ss_pred -------------------------CCCCEEEEeCCCCCC-chHHHHHHHHHhCC--CCeEEEEeCCCC--HHHHHHHHH
Confidence 112455555543221 12233333333322 345555443221 122223445
Q ss_pred CccccccccCCCcchHHHHHhhcc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
.+.+.++.||+....|...+..+.
T Consensus 99 ~g~~~~l~kp~~~~~L~~~l~~~~ 122 (154)
T 2qsj_A 99 AGADGFIPKSADPQVLIHAVSLIL 122 (154)
T ss_dssp TTCCBBCCTTSCHHHHHHHHHHHH
T ss_pred ccCCEEEeCCCCHHHHHHHHHHHH
Confidence 788899999999999998887653
No 280
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=62.94 E-value=48 Score=33.95 Aligned_cols=100 Identities=13% Similarity=0.007 Sum_probs=65.8
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhcCCeEEEEC---CHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-CCH-
Q 001330 962 GKKFLVV----EDDAIVLKVTSAVLGKLGAKFEVCR---NGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-MNG- 1032 (1099)
Q Consensus 962 ~~~ILvV----dDd~~~~~~l~~~L~~~G~~v~~a~---~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-mdG- 1032 (1099)
+.+||++ |-+..-..++..+|+..||+|.... ..++.++.+.+ ..||+|.+-..|+. +..
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~-----------~~~d~v~lS~~~~~~~~~~ 156 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKK-----------YQPDIVGMSALLTTTMMNM 156 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHH-----------HCCSEEEEECCSGGGTHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------cCCCEEEEeccccccHHHH
Confidence 3478887 6777888899999999999998643 34555555533 37999999988764 222
Q ss_pred HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
-++++.+|+... .+++||++--+....+. +.+.|+|.|-.
T Consensus 157 ~~~i~~l~~~~~--~~~~~v~vGG~~~~~~~---~~~~gad~~~~ 196 (210)
T 1y80_A 157 KSTIDALIAAGL--RDRVKVIVGGAPLSQDF---ADEIGADGYAP 196 (210)
T ss_dssp HHHHHHHHHTTC--GGGCEEEEESTTCCHHH---HHHHTCSEECS
T ss_pred HHHHHHHHhcCC--CCCCeEEEECCCCCHHH---HHHcCCeEEEC
Confidence 356667775321 13477776554444333 35679998754
No 281
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=59.18 E-value=18 Score=47.09 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=30.5
Q ss_pred EEEEEeCCCCCCcccH--------hhhccccccccc----cCCCCCCCccccHHHHHHHHHhc
Q 001330 591 EFEVDDTGKGIPKDKQ--------NSIFEEFVQVKE----TALGHQEGLGLGLGIVQSMVHLM 641 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l--------~~IFe~F~q~d~----s~~~~~~GtGLGLaIvk~lVe~~ 641 (1099)
.|+|.|+|.|||=+.. +-||.....+.+ +-.-.+|=.|.|.+.|--|-+.+
T Consensus 94 sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~~~ 156 (1177)
T 4gfh_A 94 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEF 156 (1177)
T ss_dssp EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEEEE
T ss_pred EEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCCce
Confidence 3899999999996543 345554332211 11112234699999887765543
No 282
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=59.17 E-value=26 Score=36.81 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=37.0
Q ss_pred HHHHHHHHhccccccCCCccEEEEeccCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 001330 1032 GWEATRLIRKEEEQYDVHIPIIALTAHAM------AGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089 (1099)
Q Consensus 1032 G~e~~r~IR~~~~~~~~~ipIIalTa~~~------~~~~~~~l~aG~ddyL~KPi~~~~L~~~l 1089 (1099)
++++++++|+. .++||++++.... .+....+.++|+|..+.-....++....+
T Consensus 68 ~~~~i~~i~~~-----~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~ 126 (248)
T 1geq_A 68 AFWIVKEFRRH-----SSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFT 126 (248)
T ss_dssp HHHHHHHHHTT-----CCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHH
T ss_pred HHHHHHHHHhh-----CCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHH
Confidence 37788888863 2478988874222 57788899999999988655555544333
No 283
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=58.79 E-value=90 Score=38.32 Aligned_cols=117 Identities=10% Similarity=-0.013 Sum_probs=78.7
Q ss_pred CEEEEE----eCCHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-CC-HH
Q 001330 963 KKFLVV----EDDAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-MN-GW 1033 (1099)
Q Consensus 963 ~~ILvV----dDd~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-md-G~ 1033 (1099)
.+|++. |.+..-..++..+|+..||+|..- ...++.++.+.+ ..+|+|.+-..|.. +. .-
T Consensus 597 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e-----------~~adiVglSsl~~~~~~~~~ 665 (727)
T 1req_A 597 PRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVE-----------ADVHVVGVSSLAGGHLTLVP 665 (727)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHH-----------TTCSEEEEEECSSCHHHHHH
T ss_pred CEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH-----------cCCCEEEEeeecHhHHHHHH
Confidence 477776 556666778888999999999764 356777777753 36899999887752 22 34
Q ss_pred HHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1034 EATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1034 e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
++++.||+... .+++| ++-+.....+...+.+.|+|+|..-=-+..++...+.+.++
T Consensus 666 ~vi~~L~~~G~---~~i~V-ivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 666 ALRKELDKLGR---PDILI-TVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp HHHHHHHHTTC---TTSEE-EEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC---CCCEE-EEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHH
Confidence 56677776432 14444 44544444566778899999999865666666666655543
No 284
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=58.46 E-value=25 Score=35.88 Aligned_cols=115 Identities=13% Similarity=0.200 Sum_probs=69.7
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.+++++++++..+..+...+.. .|+.+..+.+.......+...
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~~~~~------------------------------------ 47 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRK-EGFEATVVTDGPAALAEFDRA------------------------------------ 47 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEECSHHHHHHHHHHH------------------------------------
T ss_pred CeEEEEeCCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHhcc------------------------------------
Confidence 4688888889999999999987 788888777766554433321
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+... ..+.++.++.. + .++++.+...... ........
T Consensus 48 --------------------------~~dlvllD~~l~~~~-g~~~~~~l~~~-~--~~~ii~lt~~~~~--~~~~~~~~ 95 (230)
T 2oqr_A 48 --------------------------GADIVLLDLMLPGMS-GTDVCKQLRAR-S--SVPVIMVTARDSE--IDKVVGLE 95 (230)
T ss_dssp --------------------------CCSEEEEESSCSSSC-HHHHHHHHHHH-C--SCSEEEEECCHHH--HHHHHHHH
T ss_pred --------------------------CCCEEEEECCCCCCC-HHHHHHHHHcC-C--CCCEEEEeCCCcH--HHHHHHHH
Confidence 123455565443211 12233333332 2 3445554433221 11223445
Q ss_pred CccccccccCCCcchHHHHHhhcc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
.+.+.++.||+....|...++.+.
T Consensus 96 ~ga~~~l~Kp~~~~~l~~~i~~~~ 119 (230)
T 2oqr_A 96 LGADDYVTKPYSARELIARIRAVL 119 (230)
T ss_dssp HCCSCCCCSSCCHHHHHHHHHHHH
T ss_pred cCCCEEEeCCCCHHHHHHHHHHHH
Confidence 778899999999999998887653
No 285
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=58.37 E-value=10 Score=42.87 Aligned_cols=40 Identities=10% Similarity=0.165 Sum_probs=32.0
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHH
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELR 750 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~ 750 (1099)
+|+++++++..+..+..+++. .|..+..+.+.......+.
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~~~eal~~l~ 41 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEE-EGYHPDTAKTLREAEKKIK 41 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHH-cCCEEEEECCHHHHHHHHH
Confidence 578888888999999999988 7999888888776554443
No 286
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=56.81 E-value=38 Score=30.06 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=27.1
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhH
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNL 745 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~ 745 (1099)
+++++++++..+..+...+.. .|..+..+.+....
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~~~~~~ 37 (121)
T 1zh2_A 3 NVLIVEDEQAIRRFLRTALEG-DGMRVFEAETLQRG 37 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHT-TTCEEEEESSHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHhc-CCCEEEEeCCHHHH
Confidence 477888888889999999887 78887776665543
No 287
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=56.54 E-value=26 Score=32.73 Aligned_cols=70 Identities=13% Similarity=0.269 Sum_probs=35.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccCccccccccCCCcchHHHHHhhc
Q 001330 817 TLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 817 ~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.++++|...+... ..+.++.++...+ ..+++.+...... .........+.+.++.||+....|...++.+
T Consensus 51 dlvllD~~lp~~~-g~~l~~~l~~~~~--~~~ii~ls~~~~~--~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 120 (141)
T 3cu5_A 51 NVLLTDVRMPRMD-GIELVDNILKLYP--DCSVIFMSGYSDK--EYLKAAIKFRAIRYVEKPIDPSEIMDALKQS 120 (141)
T ss_dssp SEEEEESCCSSSC-HHHHHHHHHHHCT--TCEEEEECCSTTT--CCC------CCCEEECSSCCHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCC-HHHHHHHHHhhCC--CCcEEEEeCCCcH--HHHHHHHhCCccEEEeCCCCHHHHHHHHHHH
Confidence 4566666543321 2233333333222 3455555433221 2223445678889999999999998888654
No 288
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=55.43 E-value=39 Score=35.00 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=65.8
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEE--ecCCC-CCC
Q 001330 962 GKKFLVV----EDDAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMM--DCEMP-VMN 1031 (1099)
Q Consensus 962 ~~~ILvV----dDd~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlm--Di~MP-~md 1031 (1099)
+.+|++. |-+..=..++..+|+..||+|... -..++.++.+.+ ..||+|.+ -..|. .+.
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~-----------~~~d~v~l~~S~l~~~~~~ 160 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAK-----------HKGEKVLLVGSALMTTSML 160 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHH-----------TTTSCEEEEEECSSHHHHT
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHH-----------cCCCEEEEEchhcccCcHH
Confidence 3578877 667788889999999999998764 345666666643 47899999 87774 233
Q ss_pred -HHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1032 -GWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1032 -G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
--++++.+|+.... .++||++--+....+ -+.+.|+|.|-.
T Consensus 161 ~~~~~i~~l~~~~~~--~~v~v~vGG~~~~~~---~a~~iGad~~~~ 202 (215)
T 3ezx_A 161 GQKDLMDRLNEEKLR--DSVKCMFGGAPVSDK---WIEEIGADATAE 202 (215)
T ss_dssp HHHHHHHHHHHTTCG--GGSEEEEESSSCCHH---HHHHHTCCBCCS
T ss_pred HHHHHHHHHHHcCCC--CCCEEEEECCCCCHH---HHHHhCCeEEEC
Confidence 23566677754211 257766544444443 345679998854
No 289
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=52.90 E-value=28 Score=38.36 Aligned_cols=117 Identities=8% Similarity=0.123 Sum_probs=69.3
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
.|+++++++..+..+...+....|+.+..+.+.......+...
T Consensus 20 ~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~------------------------------------- 62 (358)
T 3bre_A 20 MVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQI------------------------------------- 62 (358)
T ss_dssp EEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHH-------------------------------------
T ss_pred eEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhC-------------------------------------
Confidence 4777777788888998888754688888777776554443322
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
.+.++++|...+... ..+.++.++.......++++.+..... ..........
T Consensus 63 -------------------------~~dlvl~D~~mp~~~-G~~~~~~l~~~~~~~~~~ii~~s~~~~--~~~~~~a~~~ 114 (358)
T 3bre_A 63 -------------------------KPTVILQDLVMPGVD-GLTLLAAYRGNPATRDIPIIVLSTKEE--PTVKSAAFAA 114 (358)
T ss_dssp -------------------------CCSEEEEESBCSSSB-HHHHHHHHTTSTTTTTSCEEEEESSCC--HHHHHHHHHT
T ss_pred -------------------------CCCEEEEeCCCCCCC-HHHHHHHHhcCcccCCCcEEEEeCCCC--HHHHHHHHhc
Confidence 123455555443322 234444444432223445555543221 1122234567
Q ss_pred ccccccccCCCcchHHHHHhhc
Q 001330 870 ICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
|.+.++.||+....|...++..
T Consensus 115 Ga~~~l~Kp~~~~~l~~~v~~~ 136 (358)
T 3bre_A 115 GANDYLVKLPDAIELVARIRYH 136 (358)
T ss_dssp TCSEEEESCCCHHHHHHHHHHH
T ss_pred ChheEeeccCCHHHHHHHHHHH
Confidence 8889999999998888777643
No 290
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=52.88 E-value=27 Score=39.55 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=69.3
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
+++++++++..+..+..++.. .|+.+..+.+.......+...
T Consensus 2 ~ILIVDDd~~~~~~l~~~L~~-~g~~v~~a~~~~eal~~l~~~------------------------------------- 43 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSM-KGIKVESAERGKEAYKLLSEK------------------------------------- 43 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHH-HTCEEEEESSHHHHHHHHHHS-------------------------------------
T ss_pred EEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHhC-------------------------------------
Confidence 477888888899999999987 688888887776554443321
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
.+.++++|...+.. +..+.++..+...+ ..+++.+..... ..........
T Consensus 44 -------------------------~~DlvllD~~mp~~-dG~ell~~lr~~~~--~~pvIvlT~~~~--~~~~~~a~~~ 93 (387)
T 1ny5_A 44 -------------------------HFNVVLLDLLLPDV-NGLEILKWIKERSP--ETEVIVITGHGT--IKTAVEAMKM 93 (387)
T ss_dssp -------------------------CCSEEEEESBCSSS-BHHHHHHHHHHHCT--TSEEEEEEETTC--HHHHHHHHTT
T ss_pred -------------------------CCCEEEEeCCCCCC-CHHHHHHHHHhhCC--CCcEEEEeCCCC--HHHHHHHHhc
Confidence 12345555544322 12233333333333 234555443221 1222345567
Q ss_pred ccccccccCCCcchHHHHHhhc
Q 001330 870 ICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
|.+.++.||+....|...+...
T Consensus 94 Ga~dyl~KP~~~~~L~~~i~~~ 115 (387)
T 1ny5_A 94 GAYDFLTKPCMLEEIELTINKA 115 (387)
T ss_dssp TCCEEEEESCCHHHHHHHHHHH
T ss_pred CceEEecCCCCHHHHHHHHHHH
Confidence 8899999999999988877643
No 291
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=51.86 E-value=1.4e+02 Score=32.00 Aligned_cols=85 Identities=14% Similarity=-0.039 Sum_probs=57.6
Q ss_pred HHHHHHhhcCCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEec---CCCCCCHHHHHHHHhccccccCCCccE
Q 001330 977 VTSAVLGKLGAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC---EMPVMNGWEATRLIRKEEEQYDVHIPI 1052 (1099)
Q Consensus 977 ~l~~~L~~~G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi---~MP~mdG~e~~r~IR~~~~~~~~~ipI 1052 (1099)
.+.....+.|..+ ..+.+.+|+...... ..|+|-+.- ..... +++.++++++.-+ ..+|+
T Consensus 153 ~l~~~a~~lGl~~lvev~t~ee~~~A~~~------------Gad~IGv~~r~l~~~~~-dl~~~~~l~~~v~---~~~pv 216 (272)
T 3qja_A 153 SMLDRTESLGMTALVEVHTEQEADRALKA------------GAKVIGVNARDLMTLDV-DRDCFARIAPGLP---SSVIR 216 (272)
T ss_dssp HHHHHHHHTTCEEEEEESSHHHHHHHHHH------------TCSEEEEESBCTTTCCB-CTTHHHHHGGGSC---TTSEE
T ss_pred HHHHHHHHCCCcEEEEcCCHHHHHHHHHC------------CCCEEEECCCccccccc-CHHHHHHHHHhCc---ccCEE
Confidence 3444556678875 456788886554421 467776652 12122 3566778875321 25899
Q ss_pred EEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1053 IALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1053 IalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
|+-++-.+.++..++.++|+++++.
T Consensus 217 VaegGI~t~edv~~l~~~GadgvlV 241 (272)
T 3qja_A 217 IAESGVRGTADLLAYAGAGADAVLV 241 (272)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999976
No 292
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=49.97 E-value=89 Score=32.96 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=60.0
Q ss_pred EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-------CCHHHHHHHHhccccccCCCccEEEEeccCCHH
Q 001330 990 EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-------MNGWEATRLIRKEEEQYDVHIPIIALTAHAMAG 1062 (1099)
Q Consensus 990 ~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~ 1062 (1099)
..|.+.+|+.+... ..+|+|.+.--.|. .-|++.++++++.. ...+|+|++.+- ..+
T Consensus 140 ~S~ht~~Ea~~A~~------------~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~---~~~iPvvAiGGI-~~~ 203 (243)
T 3o63_A 140 RSTHDPDQVAAAAA------------GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELG---GDDKPWFAIGGI-NAQ 203 (243)
T ss_dssp EEECSHHHHHHHHH------------SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC------CCCEEEESSC-CTT
T ss_pred EeCCCHHHHHHHhh------------CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhc---cCCCCEEEecCC-CHH
Confidence 35788888766553 25899998654443 23788888888531 125899999887 677
Q ss_pred HHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHH
Q 001330 1063 VASKIVDAGMDFHLT-----KPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1063 ~~~~~l~aG~ddyL~-----KPi~~~~L~~~l~~i~ 1093 (1099)
...+++++|++++.. +.-++.+-...+.+.+
T Consensus 204 ni~~~~~aGa~gvav~sai~~a~dp~~a~~~l~~~~ 239 (243)
T 3o63_A 204 RLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSAL 239 (243)
T ss_dssp THHHHHHTTCCCEEESHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 888999999999854 5556655555554443
No 293
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=48.06 E-value=9.6 Score=40.95 Aligned_cols=50 Identities=8% Similarity=0.093 Sum_probs=35.9
Q ss_pred CEEEEEeCC--HHHHHHHHHHHhhcCCeEEEECCHHH--HHHHHHHHhhhhhhcCCCCCccEEEEec
Q 001330 963 KKFLVVEDD--AIVLKVTSAVLGKLGAKFEVCRNGKE--AFDHVCKILSDLRKEGKALPYDYIMMDC 1025 (1099)
Q Consensus 963 ~~ILvVdDd--~~~~~~l~~~L~~~G~~v~~a~~g~e--Al~~l~~~~~~~~~~~~~~~~DlIlmDi 1025 (1099)
++||||+++ +.-...+...|++.|++|+......- -.+.+ ..||+||++-
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L-------------~~yDvIIl~d 58 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELL-------------AKQDLVILSD 58 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHH-------------HTCSEEEEES
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHH-------------hcCCEEEEcC
Confidence 489999998 66778889999999999988654321 11222 2699998873
No 294
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=47.46 E-value=1.7e+02 Score=33.28 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=64.4
Q ss_pred CEEEEEe----CCHHHHHHHHHHHhhcCCeEE--EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC------C---
Q 001330 963 KKFLVVE----DDAIVLKVTSAVLGKLGAKFE--VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE------M--- 1027 (1099)
Q Consensus 963 ~~ILvVd----Dd~~~~~~l~~~L~~~G~~v~--~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~------M--- 1027 (1099)
..++++| +.....+.++.+-+..+..+. .+.+.++|..+.+ ...|.|.+-.. .
T Consensus 157 vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~------------aGAD~I~vG~g~Gs~~~tr~~ 224 (400)
T 3ffs_A 157 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE------------NGADGIKVGIGPGSICTTRIV 224 (400)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHH------------TTCSEEEECC---------CC
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHH------------cCCCEEEEeCCCCcCcccccc
Confidence 3466664 223344555555444476655 4788888876653 25788887321 0
Q ss_pred --CCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEE
Q 001330 1028 --PVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076 (1099)
Q Consensus 1028 --P~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL 1076 (1099)
.+...++++..+++.-. ...+|||+-.+-.+.+++.+++.+|++...
T Consensus 225 ~g~g~p~~~al~~v~~~~~--~~~IPVIA~GGI~~~~di~kalalGAd~V~ 273 (400)
T 3ffs_A 225 AGVGVPQITAIEKCSSVAS--KFGIPIIADGGIRYSGDIGKALAVGASSVM 273 (400)
T ss_dssp SCBCCCHHHHHHHHHHHHT--TTTCCEEEESCCCSHHHHHHHHTTTCSEEE
T ss_pred cccchhHHHHHHHHHHHHH--hcCCCEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 11234677777764321 235899999888899999999999999865
No 295
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=47.40 E-value=1.5e+02 Score=29.76 Aligned_cols=110 Identities=7% Similarity=-0.004 Sum_probs=65.0
Q ss_pred EEEEeCCH--HHHHHHHHHHhhcCCeEEEE----CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC-------C
Q 001330 965 FLVVEDDA--IVLKVTSAVLGKLGAKFEVC----RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM-------N 1031 (1099)
Q Consensus 965 ILvVdDd~--~~~~~l~~~L~~~G~~v~~a----~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m-------d 1031 (1099)
.+++-+.+ .....+.+.+++.|..+... .+..+.++.+.+ ...|+|-++ |+. .
T Consensus 80 ~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~-----------~g~d~i~v~---~g~~g~~~~~~ 145 (211)
T 3f4w_A 80 YVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEE-----------AGADMLAVH---TGTDQQAAGRK 145 (211)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH-----------HTCCEEEEE---CCHHHHHTTCC
T ss_pred EEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH-----------cCCCEEEEc---CCCcccccCCC
Confidence 34444433 33345566667778776542 333333333322 146777765 332 3
Q ss_pred HHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHH
Q 001330 1032 GWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT-----KPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1032 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~-----KPi~~~~L~~~l~~i~ 1093 (1099)
+.+.++++|+.- +++||++-.+- ..+...+++++|+|.++. +.-++.+..+.+++.+
T Consensus 146 ~~~~i~~l~~~~----~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~ 207 (211)
T 3f4w_A 146 PIDDLITMLKVR----RKARIAVAGGI-SSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVL 207 (211)
T ss_dssp SHHHHHHHHHHC----SSCEEEEESSC-CTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc----CCCcEEEECCC-CHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHH
Confidence 567888888642 24788776655 478888999999999754 5556665555554443
No 296
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=47.00 E-value=2.3e+02 Score=30.23 Aligned_cols=116 Identities=7% Similarity=0.046 Sum_probs=73.1
Q ss_pred CEEEEE----eCCHHHHHHHHHH--------Hhhc-CCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC
Q 001330 963 KKFLVV----EDDAIVLKVTSAV--------LGKL-GAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026 (1099)
Q Consensus 963 ~~ILvV----dDd~~~~~~l~~~--------L~~~-G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~ 1026 (1099)
.+|++. |-+..-..++..+ |+.. ||+|.-. -..++.++.+.+ ..+|+|.+-..
T Consensus 121 ~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e-----------~~~d~VglS~l 189 (262)
T 1xrs_B 121 IVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVE-----------LEADVLLVSQT 189 (262)
T ss_dssp EEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHH-----------TTCSEEEEECC
T ss_pred CEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHH-----------cCCCEEEEEee
Confidence 467665 5566666677767 9999 9999753 355666666643 47999999999
Q ss_pred CCC----CCHH-HHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1027 MPV----MNGW-EATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1027 MP~----mdG~-e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
|.. +... ++++.+|+... ..++||++ -+... +...+.+.|+|.|..--....++...+...+.
T Consensus 190 ~t~~~~~~~~~~~~i~~L~~~g~--~~~i~viv-GG~~~--~~~~a~~iGad~~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 190 VTQKNVHIQNMTHLIELLEAEGL--RDRFVLLC-GGPRI--NNEIAKELGYDAGFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp CCTTSHHHHHHHHHHHHHHHTTC--GGGSEEEE-ECTTC--CHHHHHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred cCCccchHHHHHHHHHHHHhcCC--CCCCEEEE-ECCcC--CHHHHHHcCCeEEECCchHHHHHHHHHHHHHH
Confidence 885 2222 35566665321 12366554 44333 23347788999988766766666666655443
No 297
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=46.49 E-value=79 Score=32.41 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=56.5
Q ss_pred CCCEEEEEe------CCHHHHHHHHHHHhhcCCeEEEE----CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC
Q 001330 961 NGKKFLVVE------DDAIVLKVTSAVLGKLGAKFEVC----RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM 1030 (1099)
Q Consensus 961 ~~~~ILvVd------Dd~~~~~~l~~~L~~~G~~v~~a----~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1030 (1099)
.+++|++|+ |...+...+.+.|++.|+++... .+.++..+.+. ..|.|++ |+.
T Consensus 26 ~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~-------------~ad~I~l----~GG 88 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR-------------KNDFIYV----TGG 88 (206)
T ss_dssp TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH-------------HSSEEEE----CCS
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH-------------hCCEEEE----CCC
Confidence 467999996 44457788899999999999888 47777766664 3688886 888
Q ss_pred CHHHHHHHHhccccc------cCCCccEEEEec
Q 001330 1031 NGWEATRLIRKEEEQ------YDVHIPIIALTA 1057 (1099)
Q Consensus 1031 dG~e~~r~IR~~~~~------~~~~ipIIalTa 1057 (1099)
+-..+++.+|+..-. .....|++..+|
T Consensus 89 ~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sA 121 (206)
T 3l4e_A 89 NTFFLLQELKRTGADKLILEEIAAGKLYIGESA 121 (206)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETH
T ss_pred CHHHHHHHHHHCChHHHHHHHHHcCCeEEEECH
Confidence 877777766643210 012468888765
No 298
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=45.14 E-value=60 Score=32.05 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=40.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccCccccccccCCCcchHHHHHhhc
Q 001330 816 FTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 816 ~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
+.++++|...+..... .....+... ..++++.+...... .........|.+.++.||+....|...+...
T Consensus 53 ~dlvl~D~~mp~~~g~--l~~~~~~~~--~~~~ii~lt~~~~~--~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~ 122 (196)
T 1qo0_D 53 VDVVFTSIFQNRHHDE--IAALLAAGT--PRTTLVALVEYESP--AVLSQIIELECHGVITQPLDAHRVLPVLVSA 122 (196)
T ss_dssp CSEEEEECCSSTHHHH--HHHHHHHSC--TTCEEEEEECCCSH--HHHHHHHHHTCSEEEESSCCGGGHHHHHHHH
T ss_pred CCEEEEeCCCCccchH--HHHHHhccC--CCCCEEEEEcCCCh--HHHHHHHHcCCCeeEecCcCHHHHHHHHHHH
Confidence 4677888776554432 333333322 33455655433211 1122344567888999999999998888654
No 299
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=44.43 E-value=32 Score=38.77 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=30.8
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHH
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQE 748 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~ 748 (1099)
.+|+++++++..+..+..+++. .|+.+..+.+.......
T Consensus 6 ~~iLivdD~~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~ 44 (394)
T 3eq2_A 6 ATLLIIDDDEVVRESLAAYLED-SNFKVLQALNGLQGLQI 44 (394)
T ss_dssp EEEEEECSCHHHHHHHHHHHHH-TTEEEEECSSHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHH
Confidence 4688888888999999999987 78888877776654443
No 300
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=44.24 E-value=1.4e+02 Score=30.02 Aligned_cols=68 Identities=24% Similarity=0.303 Sum_probs=48.5
Q ss_pred EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-------CCHHHHHHHHhccccccCCCccEEEEeccCCHHH
Q 001330 991 VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-------MNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGV 1063 (1099)
Q Consensus 991 ~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~ 1063 (1099)
.+.+..++..... ..+|.|+++-..|. ..+++.++++++. .++||++..+-. .+.
T Consensus 114 ~~~t~~e~~~~~~------------~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~pvia~GGI~-~~n 175 (215)
T 1xi3_A 114 SVYSLEEALEAEK------------KGADYLGAGSVFPTKTKEDARVIGLEGLRKIVES-----VKIPVVAIGGIN-KDN 175 (215)
T ss_dssp EESSHHHHHHHHH------------HTCSEEEEECSSCC----CCCCCHHHHHHHHHHH-----CSSCEEEESSCC-TTT
T ss_pred ecCCHHHHHHHHh------------cCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHh-----CCCCEEEECCcC-HHH
Confidence 3577777654432 15899998764553 3578888888753 257988877665 778
Q ss_pred HHHHHHcCCCEEE
Q 001330 1064 ASKIVDAGMDFHL 1076 (1099)
Q Consensus 1064 ~~~~l~aG~ddyL 1076 (1099)
..+++++|++.+.
T Consensus 176 v~~~~~~Ga~gv~ 188 (215)
T 1xi3_A 176 AREVLKTGVDGIA 188 (215)
T ss_dssp HHHHHTTTCSEEE
T ss_pred HHHHHHcCCCEEE
Confidence 8889999999974
No 301
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=42.73 E-value=43 Score=37.86 Aligned_cols=75 Identities=11% Similarity=0.272 Sum_probs=50.2
Q ss_pred CCCccEEEEecCC-----CCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCE----EEeCCCCHHHH
Q 001330 1015 ALPYDYIMMDCEM-----PVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDF----HLTKPLQKDKL 1085 (1099)
Q Consensus 1015 ~~~~DlIlmDi~M-----P~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~dd----yL~KPi~~~~L 1085 (1099)
..++|.|=+|-.+ .......+++.|-...... .+.+| ..+-.+.+....+.+.|++. |+.||...+++
T Consensus 309 ~l~~d~iKiD~~~v~~~~~~~~~~~~v~~i~~~a~~l--~~~vv-aEGVEt~~~~~~l~~~g~~~~QGy~~~~P~~~~~~ 385 (400)
T 3sy8_A 309 EFPFSQIKLDRTFVQKMKTQPRSCAVISSVVALAQAL--GISLV-VEGVESDEQRVRLIELGCSIAQGYLFARPMPEQHF 385 (400)
T ss_dssp SCCCSEEEECTHHHHHHHHCTTHHHHHHHHHHHHHHH--TCEEE-ECCCCCHHHHHHHHHHTCCEECBTTTBCCBCHHHH
T ss_pred hCCCCEEEECHHHHhhhhcChhHHHHHHHHHHHHHHc--CCeEE-EecCCcHHHHHHHHHcCCCEEEcCeecCcCCHHHH
Confidence 4579999998532 1233444555554332222 24444 56667788888889999986 59999999999
Q ss_pred HHHHHHH
Q 001330 1086 LDVVKSI 1092 (1099)
Q Consensus 1086 ~~~l~~i 1092 (1099)
.+.+..-
T Consensus 386 ~~~~~~~ 392 (400)
T 3sy8_A 386 LDYCSGS 392 (400)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 8877654
No 302
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=42.41 E-value=15 Score=33.02 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=24.5
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchh
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEK 743 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~ 743 (1099)
.+++++++++..+..+...+.. .|..+..+.+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~~~~ 37 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAG-AGLTCTTFENGN 37 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTT-TTCCCEECCCTT
T ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCcEEEEeCCHH
Confidence 3577888888888888888876 676666555544
No 303
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=42.33 E-value=30 Score=35.39 Aligned_cols=72 Identities=18% Similarity=0.112 Sum_probs=43.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHhccc-cCCCCcceEEEeccchhcccccccccccCccccccccCCCcchHHHHHhhcc
Q 001330 816 FTLVVIDATAGSVSELVKILANFKR-DVPSLSCKVVWIDNSVIRNAHSREYRLLPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 816 ~~l~~id~~~~~~~~~~~~l~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
+.++++|...+.. +..+.++.++. ..+. ++++.+..... ..........|.+.++.||+....|...++.+.
T Consensus 55 ~dlvllD~~mp~~-~G~~~~~~lr~~~~~~--~~ii~lt~~~~--~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~ 127 (225)
T 3klo_A 55 IQMLVIDYSRISD-DVLTDYSSFKHISCPD--AKEVIINCPQD--IEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKIL 127 (225)
T ss_dssp CCEEEEEGGGCCH-HHHHHHHHHHHHHCTT--CEEEEEEECTT--CCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCC-CHHHHHHHHHHhhCCC--CcEEEEECCcc--hhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHH
Confidence 4677788766553 34455555554 3333 34554433221 112234456788999999999999998887653
No 304
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=42.04 E-value=2e+02 Score=29.83 Aligned_cols=53 Identities=21% Similarity=0.247 Sum_probs=43.4
Q ss_pred HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe------CCCCHHHHHHHHH
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT------KPLQKDKLLDVVK 1090 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~------KPi~~~~L~~~l~ 1090 (1099)
+++++++++. ..+|+|+-.+-...++..+++++|+++.+. .|+++.++.+.+.
T Consensus 185 ~~~i~~l~~~-----~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l~ 243 (252)
T 1ka9_F 185 LRLTRMVAEA-----VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYLA 243 (252)
T ss_dssp HHHHHHHHHH-----CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHH-----cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 8899999864 258999999988889999999999999754 5778888776654
No 305
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=41.62 E-value=27 Score=37.63 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=34.6
Q ss_pred CHHHHHHHHhccccccCCCccEEEEecc------CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 001330 1031 NGWEATRLIRKEEEQYDVHIPIIALTAH------AMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089 (1099)
Q Consensus 1031 dG~e~~r~IR~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l 1089 (1099)
+.+++++++|+. ..++|||+|+-. .......+|.++|+|+.|.--+.+++..+.+
T Consensus 83 ~~~~~v~~~r~~----~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~ 143 (271)
T 3nav_A 83 ICFELIAQIRAR----NPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFV 143 (271)
T ss_dssp HHHHHHHHHHHH----CTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHH
T ss_pred HHHHHHHHHHhc----CCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 346677777753 135788887632 3355677788888888877656666644433
No 306
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=41.44 E-value=70 Score=34.10 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=40.2
Q ss_pred HHHHHHHHhccccccCCCccEEEEeccC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 001330 1032 GWEATRLIRKEEEQYDVHIPIIALTAHA------MAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1032 G~e~~r~IR~~~~~~~~~ipIIalTa~~------~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i 1092 (1099)
.+++++++|+.. +++|+++++-.. .......|.++|+|+++.-.+..+++...+...
T Consensus 81 ~~~~v~~ir~~~----~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 81 VLELSETLRKEF----PDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp HHHHHHHHHHHC----TTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc----CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 456677887531 258999985432 145667899999999999888887776665554
No 307
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=41.08 E-value=2.7e+02 Score=31.21 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=63.7
Q ss_pred CEEEEEe----CCHHHHHHHHHHHhhc-CCeEE--EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC------
Q 001330 963 KKFLVVE----DDAIVLKVTSAVLGKL-GAKFE--VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV------ 1029 (1099)
Q Consensus 963 ~~ILvVd----Dd~~~~~~l~~~L~~~-G~~v~--~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~------ 1029 (1099)
..++++| +.+...+.++.+-+.. +..+. .+.+.++|.++.+. ..|.|..-+. |+
T Consensus 121 vd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a------------GAD~I~vG~g-pGs~~~tr 187 (366)
T 4fo4_A 121 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA------------GVSAVKVGIG-PGSICTTR 187 (366)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH------------TCSEEEECSS-CSTTBCHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc------------CCCEEEEecC-CCCCCCcc
Confidence 3466665 2344444455544443 44543 47888888776642 4788887321 22
Q ss_pred ------CCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1030 ------MNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1030 ------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
...++++..+++... ...+|||+--+-.+..++.+++.+|++....
T Consensus 188 ~~~g~g~p~~~~l~~v~~~~~--~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 188 IVTGVGVPQITAIADAAGVAN--EYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp HHHCCCCCHHHHHHHHHHHHG--GGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cccCcccchHHHHHHHHHHHh--hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 234666666664221 1358999988888999999999999998753
No 308
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=40.89 E-value=1.1e+02 Score=31.16 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=53.7
Q ss_pred HHHHHHHhhcCCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-------CCHHHHHHHHhccccccC
Q 001330 976 KVTSAVLGKLGAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-------MNGWEATRLIRKEEEQYD 1047 (1099)
Q Consensus 976 ~~l~~~L~~~G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-------mdG~e~~r~IR~~~~~~~ 1047 (1099)
+.++.... |..+ ..+.+..++.+... ...|.|+++-..+. .-|++.++++++.
T Consensus 102 ~~~~~~~~--~~~ig~sv~t~~~~~~a~~------------~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~----- 162 (221)
T 1yad_A 102 KQIRARFP--HLHIGRSVHSLEEAVQAEK------------EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR----- 162 (221)
T ss_dssp HHHHHHCT--TCEEEEEECSHHHHHHHHH------------TTCSEEEEECCC----------CHHHHHHHHHHH-----
T ss_pred HHHHHHCC--CCEEEEEcCCHHHHHHHHh------------CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHh-----
Confidence 33444432 5433 35677777765542 24799988764332 2367888888753
Q ss_pred CCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1048 VHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1048 ~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
..+||++..+- +.+...+++++|++.+..
T Consensus 163 ~~~pvia~GGI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 163 ISIPVIAIGGM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp CCSCEEEESSC-CGGGHHHHHHTTCSEEEE
T ss_pred CCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 25899988777 788999999999998743
No 309
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=40.86 E-value=83 Score=28.81 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=25.0
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHH
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLH 746 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~ 746 (1099)
+++++++++..+..+...+... ..+..+.+.....
T Consensus 3 ~Ilivdd~~~~~~~l~~~l~~~--~~v~~~~~~~~a~ 37 (139)
T 2jk1_A 3 AILLVDDEPHSLAAMKLALEDD--FDVLTAQGAEAAI 37 (139)
T ss_dssp EEEEECSSHHHHHHHHHHHTTT--SCEEEESSHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHhhcC--ceEEEcCCHHHHH
Confidence 5788888888888888888762 6666666555433
No 310
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=38.25 E-value=2e+02 Score=30.77 Aligned_cols=97 Identities=9% Similarity=0.009 Sum_probs=63.3
Q ss_pred HHHHHHHhhcCCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCC---CCCCHHHHHHHHhccccccCCCcc
Q 001330 976 KVTSAVLGKLGAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM---PVMNGWEATRLIRKEEEQYDVHIP 1051 (1099)
Q Consensus 976 ~~l~~~L~~~G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~M---P~mdG~e~~r~IR~~~~~~~~~ip 1051 (1099)
..+......+|..+ ..+.|.+|+...+ ...+|+|=..-.- -..| ++.+.++.+.-+ ..+|
T Consensus 159 ~~l~~~a~~lGl~~lvevh~~eEl~~A~------------~~ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip---~~~~ 222 (272)
T 3tsm_A 159 KELEDTAFALGMDALIEVHDEAEMERAL------------KLSSRLLGVNNRNLRSFEVN-LAVSERLAKMAP---SDRL 222 (272)
T ss_dssp HHHHHHHHHTTCEEEEEECSHHHHHHHT------------TSCCSEEEEECBCTTTCCBC-THHHHHHHHHSC---TTSE
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHHHH------------hcCCCEEEECCCCCccCCCC-hHHHHHHHHhCC---CCCc
Confidence 33444455679875 4578888875544 2357877554221 1122 566666664322 2579
Q ss_pred EEEEeccCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHH
Q 001330 1052 IIALTAHAMAGVASKIVDAGMDFHLT-----KPLQKDKLLDV 1088 (1099)
Q Consensus 1052 IIalTa~~~~~~~~~~l~aG~ddyL~-----KPi~~~~L~~~ 1088 (1099)
+|+-++-.+.++..++.++|+++++. ||-++.+-...
T Consensus 223 vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~~~~~ 264 (272)
T 3tsm_A 223 LVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAATRA 264 (272)
T ss_dssp EEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHHHHHH
Confidence 99999999999999999999999965 66666554443
No 311
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=38.09 E-value=26 Score=37.66 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=35.6
Q ss_pred HHHHHHHhccccccCCCccEEEEeccC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTAHA------MAGVASKIVDAGMDFHLTKPLQKDKLLDVVKS 1091 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa~~------~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~ 1091 (1099)
+++++++|+. ..++||++|+-.+ ......+|.++|+|+.+.-.+.+++..+.++.
T Consensus 83 ~~~v~~ir~~----~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~ 143 (267)
T 3vnd_A 83 FDIITKVRAQ----HPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKA 143 (267)
T ss_dssp HHHHHHHHHH----CTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred HHHHHHHHhc----CCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHH
Confidence 5667777753 1357888876422 24567778888888888766776665554443
No 312
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=37.79 E-value=1.2e+02 Score=31.79 Aligned_cols=52 Identities=23% Similarity=0.257 Sum_probs=34.2
Q ss_pred HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe------CCCCHHHHHHHH
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT------KPLQKDKLLDVV 1089 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~------KPi~~~~L~~~l 1089 (1099)
+++++++++. ..+|+|+-.+-.+.++..+++++|+++++. .|+...++.+.+
T Consensus 189 ~~~i~~l~~~-----~~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l 246 (266)
T 2w6r_A 189 TEMIRFVRPL-----TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDMRELKEYL 246 (266)
T ss_dssp HHHHHHHGGG-----CCSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC-------------
T ss_pred HHHHHHHHHH-----cCCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCCHHHHHHHH
Confidence 7889999864 358999999999999999999999999754 456666665544
No 313
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=37.57 E-value=47 Score=36.21 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=34.1
Q ss_pred CCEEEEEeCCH---HHHHHHHHHHhhcCCeEEEEC---CHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH
Q 001330 962 GKKFLVVEDDA---IVLKVTSAVLGKLGAKFEVCR---NGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG 1032 (1099)
Q Consensus 962 ~~~ILvVdDd~---~~~~~l~~~L~~~G~~v~~a~---~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG 1032 (1099)
+.+|+++|-|. ...+.+....+..|..+.... +..+.+. +.+...+ ...||+||+|. |+..+
T Consensus 126 g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~---~~l~~~~----~~~~D~ViIDT--pg~~~ 193 (297)
T 1j8m_F 126 GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAK---RGVEKFL----SEKMEIIIVDT--AGRHG 193 (297)
T ss_dssp TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHH---HHHHHHH----HTTCSEEEEEC--CCSCC
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHH---HHHHHHH----hCCCCEEEEeC--CCCcc
Confidence 56899999883 333444444556677766543 3333221 1111111 13699999998 54443
No 314
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=35.91 E-value=79 Score=33.70 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=34.9
Q ss_pred HHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1032 GWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1032 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
+.+.++++|+. ..+|||+..+-.+.++..+++++|+|+++.
T Consensus 166 ~~~~l~~i~~~-----~~iPviv~gGI~t~eda~~~~~~GAdgViV 206 (264)
T 1xm3_A 166 NPLNLSFIIEQ-----AKVPVIVDAGIGSPKDAAYAMELGADGVLL 206 (264)
T ss_dssp CHHHHHHHHHH-----CSSCBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHhc-----CCCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 47888999863 258999999988999999999999999864
No 315
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=35.78 E-value=2e+02 Score=29.85 Aligned_cols=86 Identities=7% Similarity=0.063 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcCCeEEEEC---CHHHHHHHHHHHhhhhhhcCCCCCcc-EEEEecCCCCCC---------HHHHHHHHhc
Q 001330 975 LKVTSAVLGKLGAKFEVCR---NGKEAFDHVCKILSDLRKEGKALPYD-YIMMDCEMPVMN---------GWEATRLIRK 1041 (1099)
Q Consensus 975 ~~~l~~~L~~~G~~v~~a~---~g~eAl~~l~~~~~~~~~~~~~~~~D-lIlmDi~MP~md---------G~e~~r~IR~ 1041 (1099)
...+.+.+++.|..+...- +..++++.+... .| +|.+ +..|+.. +++.++++|+
T Consensus 122 ~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~------------~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~ 188 (248)
T 1geq_A 122 AKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDM------------TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKR 188 (248)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH------------CSSEEEE-ECCC-------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc------------CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHh
Confidence 3445566677787765443 345666555321 23 5533 2235433 3457777775
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeC
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTK 1078 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~K 1078 (1099)
. .++||++-.+-...++..+++++|+|.++.=
T Consensus 189 ~-----~~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 189 I-----CRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp H-----CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred h-----cCCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 3 2589988888777799999999999998753
No 316
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=35.53 E-value=55 Score=37.71 Aligned_cols=60 Identities=27% Similarity=0.390 Sum_probs=30.5
Q ss_pred CCEEEEEeCCH---HHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEec
Q 001330 962 GKKFLVVEDDA---IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025 (1099)
Q Consensus 962 ~~~ILvVdDd~---~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi 1025 (1099)
|++|++||-|+ ...+.+...-...|..+..+..+....+.+.+.+.... ...||+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~----~~~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK----LKFYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHH----HTTCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHH----hCCCCEEEEEC
Confidence 67899999986 22233333334456666555332111111111111111 13689999998
No 317
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=35.26 E-value=2.5e+02 Score=33.91 Aligned_cols=116 Identities=12% Similarity=0.099 Sum_probs=73.7
Q ss_pred CEEEEE----eCCHHHHHHH----HHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC--
Q 001330 963 KKFLVV----EDDAIVLKVT----SAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-- 1029 (1099)
Q Consensus 963 ~~ILvV----dDd~~~~~~l----~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-- 1029 (1099)
.+|++. |-+..-..++ ..+|+..||+|.-. ...++.++.+.+ ..+|+|.+-..|..
T Consensus 603 GKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~E-----------edADVVGLSsLLTt~d 671 (763)
T 3kp1_A 603 LKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIE-----------LKADAILASTIISHDD 671 (763)
T ss_dssp CEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHH-----------TTCSEEEEECCCCGGG
T ss_pred CEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-----------cCCCEEEEeccccCch
Confidence 478877 3344443333 47899999999754 467777777753 47999999998886
Q ss_pred --CCHH-HHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1030 --MNGW-EATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1030 --mdG~-e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
+..+ ++++.+|+... ...+||++ -+.....+ -+.+.|+|.|..-.....++...+...+.
T Consensus 672 ihL~~MkevIelLrE~Gl--rDkIkVIV-GGa~~tqd--~AkeIGADa~f~DATeAVeVA~~Ll~~l~ 734 (763)
T 3kp1_A 672 IHYKNMKRIHELAVEKGI--RDKIMIGC-GGTQVTPE--VAVKQGVDAGFGRGSKGIHVATFLVKKRR 734 (763)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTTSEEEE-ECTTCCHH--HHHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCC--CCCCEEEE-ECCCCCHH--HHHHcCCcEEECCcchHHHHHHHHHHHHH
Confidence 4444 45566765422 11355554 44333333 34589999998877777666666655443
No 318
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=34.22 E-value=22 Score=36.44 Aligned_cols=116 Identities=11% Similarity=0.111 Sum_probs=66.8
Q ss_pred eEEEEecChHHHHHHHHHhhhccCce-EEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIK-VTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~-v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
+++++++++..+..+..++....++. +..+.+.......+...
T Consensus 3 ~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~------------------------------------ 46 (225)
T 3c3w_A 3 KVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAA------------------------------------ 46 (225)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHH------------------------------------
T ss_pred EEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc------------------------------------
Confidence 57888888889999999998733376 34566665544433321
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+.. +..+.++.++...+ .++++.+..... .........
T Consensus 47 --------------------------~~dlvllD~~lp~~-~g~~~~~~lr~~~~--~~~ii~lt~~~~--~~~~~~~~~ 95 (225)
T 3c3w_A 47 --------------------------RPDVAVLDVRLPDG-NGIELCRDLLSRMP--DLRCLILTSYTS--DEAMLDAIL 95 (225)
T ss_dssp --------------------------CCSEEEECSEETTE-EHHHHHHHHHHHCT--TCEEEEGGGSSS--HHHHHHHHH
T ss_pred --------------------------CCCEEEEeCCCCCC-CHHHHHHHHHHhCC--CCcEEEEECCCC--HHHHHHHHH
Confidence 12345555543321 12233333333222 345555543221 122223445
Q ss_pred CccccccccCCCcchHHHHHhhcc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
.|.+.++.||+....|...++.+.
T Consensus 96 ~Ga~~~l~Kp~~~~~L~~~i~~~~ 119 (225)
T 3c3w_A 96 AGASGYVVKDIKGMELARAVKDVG 119 (225)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHHH
Confidence 778899999999999988887543
No 319
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=33.40 E-value=70 Score=32.18 Aligned_cols=71 Identities=20% Similarity=0.167 Sum_probs=38.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccCccccccccCCCcchHHHHHhhcc
Q 001330 817 TLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 817 ~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
.++++|...+... ..+.++.++...+ .++++.+..... ..........+.+.++.||+....|...+..+.
T Consensus 45 dlvllD~~lp~~~-g~~~~~~lr~~~~--~~~ii~lt~~~~--~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~ 115 (220)
T 1p2f_A 45 HVVVLDVMLPDYS-GYEICRMIKETRP--ETWVILLTLLSD--DESVLKGFEAGADDYVTKPFNPEILLARVKRFL 115 (220)
T ss_dssp SEEEEESBCSSSB-HHHHHHHHHHHCT--TSEEEEEESCCS--HHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCC-HHHHHHHHHhcCC--CCcEEEEEcCCC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 4566666543321 2233333333323 344554433221 112223445778899999999999998887653
No 320
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=33.29 E-value=42 Score=35.93 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=38.8
Q ss_pred HHHHHHHHhccccccCCCccEEEEecc------CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 001330 1032 GWEATRLIRKEEEQYDVHIPIIALTAH------AMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1032 G~e~~r~IR~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i 1092 (1099)
+++.+++||+. ..++||++|+-. ........|.++|+|+++.-.+..+++...++.+
T Consensus 81 ~~~~v~~ir~~----~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 81 CFEMLAIIREK----HPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp HHHHHHHHHHH----CSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 45667777753 135788887622 2256778899999999988777777666555544
No 321
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=31.59 E-value=37 Score=36.77 Aligned_cols=71 Identities=8% Similarity=0.001 Sum_probs=48.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-CCHHHHHHHHh
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-MNGWEATRLIR 1040 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-mdG~e~~r~IR 1040 (1099)
+.++.+||-++...+.+++.++..+-.-+...|+.+++..+.. ....+|+||+|----. .+.-.+++.|.
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~---------~~~~fdLVfiDPPYe~k~~~~~vl~~L~ 183 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLP---------PPEKRGLIFIDPSYERKEEYKEIPYAIK 183 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCS---------CTTSCEEEEECCCCCSTTHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcC---------CCCCccEEEECCCCCCCcHHHHHHHHHH
Confidence 3589999999999999999987643334456888888876621 1235999999963332 23444555555
Q ss_pred c
Q 001330 1041 K 1041 (1099)
Q Consensus 1041 ~ 1041 (1099)
+
T Consensus 184 ~ 184 (283)
T 2oo3_A 184 N 184 (283)
T ss_dssp H
T ss_pred H
Confidence 4
No 322
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=31.23 E-value=3.1e+02 Score=29.81 Aligned_cols=81 Identities=20% Similarity=0.140 Sum_probs=56.4
Q ss_pred HHHhhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC----C---CCHHHHHHHHhccccccCCCcc
Q 001330 980 AVLGKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP----V---MNGWEATRLIRKEEEQYDVHIP 1051 (1099)
Q Consensus 980 ~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP----~---mdG~e~~r~IR~~~~~~~~~ip 1051 (1099)
..+++.|..+. .+.+.++|..... ...|.|+++-.-+ + ...+++++++++. .++|
T Consensus 112 ~~l~~~gi~vi~~v~t~~~a~~~~~------------~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~-----~~iP 174 (328)
T 2gjl_A 112 AEFRRHGVKVIHKCTAVRHALKAER------------LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR-----LRVP 174 (328)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHH------------TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT-----CCSC
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHH------------cCCCEEEEECCCCCcCCCCccccHHHHHHHHHHh-----cCCC
Confidence 34455576554 3678887766542 2478888753222 1 2567888888853 2589
Q ss_pred EEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1052 IIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1052 IIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
||+-.+-.+.++..+++..|++.+..
T Consensus 175 viaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 175 IIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp EEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 99988888899999999999998753
No 323
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=31.13 E-value=1.1e+02 Score=26.97 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=32.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHH
Q 001330 965 FLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKI 1005 (1099)
Q Consensus 965 ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~ 1005 (1099)
+|+-|.++.-.+..++-++..||+|.-+.+.++|+..+.+.
T Consensus 80 lllqdqdeneleefkrkiesqgyevrkvtddeealkivref 120 (134)
T 2lci_A 80 LLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVREF 120 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHHH
T ss_pred EEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHHH
Confidence 34556677777888888888899999999999998888653
No 324
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=30.68 E-value=1.2e+02 Score=32.73 Aligned_cols=85 Identities=14% Similarity=0.009 Sum_probs=51.5
Q ss_pred HhhcCC-eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC--CCCH----------HHHHHHHhccccccCC
Q 001330 982 LGKLGA-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP--VMNG----------WEATRLIRKEEEQYDV 1048 (1099)
Q Consensus 982 L~~~G~-~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP--~mdG----------~e~~r~IR~~~~~~~~ 1048 (1099)
..+.|. .+..+.|.+||-.+..- .+|+|...+-+- +.-| -+.++++.+.-...++
T Consensus 159 A~~~gL~Ti~~v~~~eeA~amA~a------------gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnp 226 (286)
T 2p10_A 159 AHKLDLLTTPYVFSPEDAVAMAKA------------GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRD 226 (286)
T ss_dssp HHHTTCEECCEECSHHHHHHHHHH------------TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHCCCeEEEecCCHHHHHHHHHc------------CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCC
Confidence 455675 56788999999877642 689998864321 3333 3344444332222234
Q ss_pred CccEEEEe-ccCCHHHHHHHHHc--CCCEEEeC
Q 001330 1049 HIPIIALT-AHAMAGVASKIVDA--GMDFHLTK 1078 (1099)
Q Consensus 1049 ~ipIIalT-a~~~~~~~~~~l~a--G~ddyL~K 1078 (1099)
++.++.=. +-...+|...+++. |+++|+.-
T Consensus 227 dvivLc~gGpIstpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 227 DIIILSHGGPIANPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp CCEEEEESTTCCSHHHHHHHHHHCTTCCEEEES
T ss_pred CcEEEecCCCCCCHHHHHHHHhcCCCccEEEee
Confidence 44333222 34689999999999 99999864
No 325
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=30.41 E-value=2.3e+02 Score=31.62 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhcCCeEE--EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC------------CCCHHHHHHH
Q 001330 973 IVLKVTSAVLGKLGAKFE--VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP------------VMNGWEATRL 1038 (1099)
Q Consensus 973 ~~~~~l~~~L~~~G~~v~--~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP------------~mdG~e~~r~ 1038 (1099)
...+.++.+-+..+..+. .+.+.++|..+.. ...|.|.+-.. | +...++++.+
T Consensus 132 ~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~------------aGaD~I~VG~~-~Gs~~~tr~~~g~g~p~~~~i~~ 198 (361)
T 3khj_A 132 NIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE------------NGADGIKVGIG-PGSICTTRIVAGVGVPQITAIEK 198 (361)
T ss_dssp HHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHH------------TTCSEEEECSS-CCTTCCHHHHTCBCCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHH------------cCcCEEEEecC-CCcCCCcccccCCCCCcHHHHHH
Confidence 344555554444466654 4678888766553 25788887311 1 1234566666
Q ss_pred HhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEE
Q 001330 1039 IRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076 (1099)
Q Consensus 1039 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL 1076 (1099)
+++.... ..+|||+--+-.+.+++.+++.+|++...
T Consensus 199 v~~~~~~--~~iPVIA~GGI~~~~di~kala~GAd~V~ 234 (361)
T 3khj_A 199 CSSVASK--FGIPIIADGGIRYSGDIGKALAVGASSVM 234 (361)
T ss_dssp HHHHHHH--HTCCEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHhh--cCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 6543211 25899998888899999999999999874
No 326
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=30.40 E-value=21 Score=35.28 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=19.5
Q ss_pred eeccccCcccccccccccc-CCccccCchh
Q 001330 150 YTQPVNRDTGMLYGNAIAS-IPIVSANASW 178 (1099)
Q Consensus 150 ~~~~~~~~~g~~~g~~~~~-~~~~~~~~~~ 178 (1099)
.-|||||+||+.|.+..-. ....+.|.+|
T Consensus 61 VLqaV~p~TG~~y~~~T~P~~G~lL~N~~Y 90 (187)
T 3kcp_B 61 VLMAVDPETGKEFTSSTFPPGRTVLKNNAY 90 (187)
T ss_dssp TEEEECTTTCCBCCTTCCCCCCCSSCCGGG
T ss_pred HeeecccCcCCccccccCCCCceecccCcc
Confidence 3599999999999987622 2233444444
No 327
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=29.90 E-value=3.1e+02 Score=29.68 Aligned_cols=55 Identities=20% Similarity=0.214 Sum_probs=39.1
Q ss_pred HHHHHHHhccccccCCCccEE--EEeccCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHH
Q 001330 1033 WEATRLIRKEEEQYDVHIPII--ALTAHAMAGVASKIVDAGMDFHLT-----KPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~ddyL~-----KPi~~~~L~~~l~~i 1092 (1099)
+++++++++. ..+|+| +-.+-...++..+++++|+|.++. |--++.+....+.+.
T Consensus 196 ~~ll~~i~~~-----~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~a 257 (297)
T 4adt_A 196 IDLILLTRKL-----KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMA 257 (297)
T ss_dssp HHHHHHHHHH-----TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-----cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHH
Confidence 6888888764 246776 566666899999999999999864 545665555444443
No 328
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=29.42 E-value=62 Score=32.67 Aligned_cols=36 Identities=3% Similarity=0.037 Sum_probs=28.8
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHH
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLH 746 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~ 746 (1099)
+++++++++..+..+..++.. .|+.+..+.+.....
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al 37 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNV-KGFMADVTESLEDGE 37 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGG-GTCCEEEESSHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHH-CCcEEEEECCHHHHH
Confidence 477888888899999999988 788888777766543
No 329
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=29.22 E-value=2.8e+02 Score=28.11 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=45.0
Q ss_pred ECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC--------CCCHHHHHHHHhccccccCCCccEEEEeccCCHHH
Q 001330 992 CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP--------VMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGV 1063 (1099)
Q Consensus 992 a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP--------~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~ 1063 (1099)
+.+..++.+... ..+|.|++..-.| ...|++.++++++.. .++||++..+-. .+.
T Consensus 123 ~~t~~e~~~a~~------------~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~----~~~pvia~GGI~-~~n 185 (227)
T 2tps_A 123 AHTMSEVKQAEE------------DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG----ISIPIVGIGGIT-IDN 185 (227)
T ss_dssp ECSHHHHHHHHH------------HTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT----CCCCEEEESSCC-TTT
T ss_pred cCCHHHHHHHHh------------CCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC----CCCCEEEEcCCC-HHH
Confidence 467777544432 1479888632222 123688888888632 137998877766 777
Q ss_pred HHHHHHcCCCEEE
Q 001330 1064 ASKIVDAGMDFHL 1076 (1099)
Q Consensus 1064 ~~~~l~aG~ddyL 1076 (1099)
..+++++|++.+.
T Consensus 186 v~~~~~~Ga~gv~ 198 (227)
T 2tps_A 186 AAPVIQAGADGVS 198 (227)
T ss_dssp SHHHHHTTCSEEE
T ss_pred HHHHHHcCCCEEE
Confidence 7888999999874
No 330
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=28.85 E-value=24 Score=34.52 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=14.8
Q ss_pred eeccccCcccccccccc
Q 001330 150 YTQPVNRDTGMLYGNAI 166 (1099)
Q Consensus 150 ~~~~~~~~~g~~~g~~~ 166 (1099)
.-|||||+||+.|.+..
T Consensus 49 VLqaVn~~tG~~~~~~t 65 (166)
T 2bm3_A 49 VLMAVDPETGKEFTSST 65 (166)
T ss_dssp TEEEECTTTCCBCCTTC
T ss_pred ceEeecCCcCCcccccc
Confidence 46999999999998766
No 331
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=28.67 E-value=6.4e+02 Score=28.04 Aligned_cols=95 Identities=16% Similarity=0.026 Sum_probs=58.6
Q ss_pred CEEEEEeCC----HHHHHHHHHHHhhc-CCeEEE--ECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC-----
Q 001330 963 KKFLVVEDD----AIVLKVTSAVLGKL-GAKFEV--CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM----- 1030 (1099)
Q Consensus 963 ~~ILvVdDd----~~~~~~l~~~L~~~-G~~v~~--a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m----- 1030 (1099)
..++.+|-. ....+.++.+=+.. +..|.. +.+.++|..+.+ ...|.|.+... |+.
T Consensus 113 vdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~------------aGaD~I~Vg~g-~G~~~~tr 179 (361)
T 3r2g_A 113 ADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLAS------------CGADIIKAGIG-GGSVCSTR 179 (361)
T ss_dssp CCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHH------------TTCSEEEECCS-SSSCHHHH
T ss_pred CCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHH------------cCCCEEEEcCC-CCcCcccc
Confidence 347777622 22333433332222 555544 778888877663 25798888533 322
Q ss_pred -------CHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEE
Q 001330 1031 -------NGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076 (1099)
Q Consensus 1031 -------dG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL 1076 (1099)
..++++.++++. .. |||+-.+-.+..++.+++.+|||...
T Consensus 180 ~~~g~g~p~l~aI~~~~~~-----~~-PVIAdGGI~~~~di~kALa~GAd~V~ 226 (361)
T 3r2g_A 180 IKTGFGVPMLTCIQDCSRA-----DR-SIVADGGIKTSGDIVKALAFGADFVM 226 (361)
T ss_dssp HHHCCCCCHHHHHHHHTTS-----SS-EEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred ccCCccHHHHHHHHHHHHh-----CC-CEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 234455555431 12 99998888899999999999999864
No 332
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=28.61 E-value=3.6e+02 Score=27.39 Aligned_cols=54 Identities=24% Similarity=0.246 Sum_probs=41.3
Q ss_pred HHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe------CCCCHHHHHHHHH
Q 001330 1032 GWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT------KPLQKDKLLDVVK 1090 (1099)
Q Consensus 1032 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~------KPi~~~~L~~~l~ 1090 (1099)
.++.++++++. ..+||++-.+-...++..+++++|++.++. .+.+.+++.+.++
T Consensus 186 ~~~~i~~l~~~-----~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~~~~l~ 245 (253)
T 1h5y_A 186 DVELIRRVADS-----VRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKRYLK 245 (253)
T ss_dssp CHHHHHHHHHH-----CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHH
T ss_pred CHHHHHHHHHh-----cCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHHH
Confidence 46788888863 258999988888889999999999999753 5667776666554
No 333
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=28.60 E-value=2.5e+02 Score=29.06 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=48.1
Q ss_pred cc-EEEEecCCCC-CC--HHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe------CCCCHHHHHH
Q 001330 1018 YD-YIMMDCEMPV-MN--GWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT------KPLQKDKLLD 1087 (1099)
Q Consensus 1018 ~D-lIlmDi~MP~-md--G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~------KPi~~~~L~~ 1087 (1099)
++ +++++..-.+ .. .++.++++++. ..+|||+-.+-...++..+++++|+++++. .|+++++..+
T Consensus 165 ~~~i~~~~~~~~g~~~g~~~~~~~~l~~~-----~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~~~~~~ 239 (253)
T 1thf_D 165 AGEILLTSIDRDGTKSGYDTEMIRFVRPL-----TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKE 239 (253)
T ss_dssp CSEEEEEETTTTTSCSCCCHHHHHHHGGG-----CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHHHH
T ss_pred CCEEEEEeccCCCCCCCCCHHHHHHHHHh-----cCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCHHHHHH
Confidence 55 4456554211 12 27889999853 258999999888889999999999999754 4667777766
Q ss_pred HHH
Q 001330 1088 VVK 1090 (1099)
Q Consensus 1088 ~l~ 1090 (1099)
.++
T Consensus 240 ~l~ 242 (253)
T 1thf_D 240 YLK 242 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 334
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=28.26 E-value=2.2e+02 Score=29.75 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=60.7
Q ss_pred HHHHHhhcCC-eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEe
Q 001330 978 TSAVLGKLGA-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALT 1056 (1099)
Q Consensus 978 l~~~L~~~G~-~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalT 1056 (1099)
+...|.+.+. -|....+.+++++..+...+ ...++|=+.+ -..++.+.++++|+..+ . .+|...
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~--------gGi~~iEvt~--~t~~a~e~I~~l~~~~~----~-~~iGaG 91 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAE--------NGLPAAEITF--RSDAAVEAIRLLRQAQP----E-MLIGAG 91 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHH--------TTCCEEEEET--TSTTHHHHHHHHHHHCT----T-CEEEEE
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHH--------CCCCEEEEeC--CCCCHHHHHHHHHHhCC----C-CEEeEC
Confidence 3445555564 45667888888887754321 2455555544 45578999999987431 2 344443
Q ss_pred ccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 001330 1057 AHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090 (1099)
Q Consensus 1057 a~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~ 1090 (1099)
.--+.++...+.++|++-.++ |-...++.+..+
T Consensus 92 TVlt~~~a~~Ai~AGA~fIvs-P~~~~~vi~~~~ 124 (232)
T 4e38_A 92 TILNGEQALAAKEAGATFVVS-PGFNPNTVRACQ 124 (232)
T ss_dssp CCCSHHHHHHHHHHTCSEEEC-SSCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHcCCCEEEe-CCCCHHHHHHHH
Confidence 355688999999999985554 655455554443
No 335
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=27.43 E-value=1.4e+02 Score=30.18 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=61.0
Q ss_pred HHHhhcCCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC-CCCHHHHHHHHhccccccCCCccEEEEec
Q 001330 980 AVLGKLGAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP-VMNGWEATRLIRKEEEQYDVHIPIIALTA 1057 (1099)
Q Consensus 980 ~~L~~~G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP-~mdG~e~~r~IR~~~~~~~~~ipIIalTa 1057 (1099)
...++.|..+ ..+.+..++.+... ...|+|.+ .| ...|.+.++++++..+ .++||++..+
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~------------~G~d~v~v---~~t~~~g~~~~~~l~~~~~---~~ipvia~GG 156 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALE------------AGAQALKI---FPSSAFGPQYIKALKAVLP---SDIAVFAVGG 156 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHH------------TTCSEEEE---TTHHHHCHHHHHHHHTTSC---TTCEEEEESS
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHH------------CCCCEEEE---ecCCCCCHHHHHHHHHhcc---CCCeEEEeCC
Confidence 3344556553 23678888765542 25788886 22 1236788888876421 1489998888
Q ss_pred cCCHHHHHHHHHcCCCEEEeC-CCC-H----HHHHHHHHHHHHH
Q 001330 1058 HAMAGVASKIVDAGMDFHLTK-PLQ-K----DKLLDVVKSIDET 1095 (1099)
Q Consensus 1058 ~~~~~~~~~~l~aG~ddyL~K-Pi~-~----~~L~~~l~~i~~~ 1095 (1099)
-. .++..+++++|++.+..= -+- . ++..+.++++.+.
T Consensus 157 I~-~~~i~~~~~~Ga~gv~vGsai~~~~~~~~d~~~~~~~l~~~ 199 (212)
T 2v82_A 157 VT-PENLAQWIDAGCAGAGLGSDLYRAGQSVERTAQQAAAFVKA 199 (212)
T ss_dssp CC-TTTHHHHHHHTCSEEEECTTTCCTTCCHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHcCCCEEEEChHHhCCCCCHHHHHHHHHHHHHH
Confidence 76 788889999999998633 222 1 4565666555443
No 336
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=27.22 E-value=6.5e+02 Score=29.30 Aligned_cols=101 Identities=14% Similarity=0.066 Sum_probs=61.9
Q ss_pred CEEEEEeCC----HHHHHHHHHHHhhcC-CeEE--EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC-------
Q 001330 963 KKFLVVEDD----AIVLKVTSAVLGKLG-AKFE--VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP------- 1028 (1099)
Q Consensus 963 ~~ILvVdDd----~~~~~~l~~~L~~~G-~~v~--~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP------- 1028 (1099)
..+++++.. ....+.++.+-+..+ ..+. .+.+.++|..+... ..|.|.....--
T Consensus 269 vd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a------------Gad~i~vg~g~gsi~~~~~ 336 (511)
T 3usb_A 269 VDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA------------GANVVKVGIGPGSICTTRV 336 (511)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH------------TCSEEEECSSCSTTCCHHH
T ss_pred cceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh------------CCCEEEECCCCcccccccc
Confidence 457777642 233445555444443 3333 45677777666532 478887643211
Q ss_pred ----CCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1029 ----VMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1029 ----~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
+...++++..+++.... ..+|||+--+-....++.+++.+||+..+.
T Consensus 337 ~~g~g~p~~~~l~~v~~~~~~--~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 337 VAGVGVPQLTAVYDCATEARK--HGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp HHCCCCCHHHHHHHHHHHHHT--TTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ccCCCCCcHHHHHHHHHHHHh--CCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 12345566555433221 258999999999999999999999999754
No 337
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=27.18 E-value=84 Score=31.86 Aligned_cols=35 Identities=9% Similarity=0.300 Sum_probs=28.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHH
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKE 997 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~e 997 (1099)
++|+|||=-.-|...+.+.|++.|+++.+..+.++
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~ 37 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTISRDPQV 37 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHH
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEECCHHH
Confidence 47999987666777788889999999999888654
No 338
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=27.12 E-value=3.9e+02 Score=28.19 Aligned_cols=85 Identities=12% Similarity=0.240 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCC
Q 001330 994 NGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMD 1073 (1099)
Q Consensus 994 ~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d 1073 (1099)
+..+.++++.. ..+|.|++|+.--..+.-.+...++..... ..++++=....+..++..+++.|++
T Consensus 25 ~~p~~~e~a~~-----------~g~D~vilDlEhav~~~~k~~~~l~a~~~~---~~~~~VRVn~~~~~di~~~ld~G~~ 90 (261)
T 3qz6_A 25 YNPDIVRIYAE-----------AGLDYFIVDCEHAAYTFREINHLVSVAKNA---GVSVLVRIPQVDRAHVQRLLDIGAE 90 (261)
T ss_dssp CCTTHHHHHHH-----------TTCSEEEEESSSSCCCHHHHHHHHHHHHHH---TCEEEEECSSCCHHHHHHHHHHTCC
T ss_pred CCHHHHHHHhc-----------CCcCEEEEeccCCCCCHHHHHHHHHHHhhc---CCeEEEEeCCCCHHHHHHHHhcCCC
Confidence 44566666642 369999999998888887777777654321 2334443344566899999999999
Q ss_pred EEE-eCCCCHHHHHHHHHHH
Q 001330 1074 FHL-TKPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1074 dyL-~KPi~~~~L~~~l~~i 1092 (1099)
..+ .|--+.+++...++.+
T Consensus 91 gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 91 GFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp EEEETTCCSHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHh
Confidence 864 4445778877776654
No 339
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=27.12 E-value=1.2e+02 Score=31.83 Aligned_cols=101 Identities=16% Similarity=0.239 Sum_probs=65.9
Q ss_pred HHHHHHhhcCCeEEE--ECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCC----C-CCCHHHHHHHHhccccccCCC
Q 001330 977 VTSAVLGKLGAKFEV--CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM----P-VMNGWEATRLIRKEEEQYDVH 1049 (1099)
Q Consensus 977 ~l~~~L~~~G~~v~~--a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~M----P-~mdG~e~~r~IR~~~~~~~~~ 1049 (1099)
.....|++.|+.+.. +..|...+..+.. .+||.|=+|-.+ . ......+++.|...... ..
T Consensus 143 ~~l~~l~~~G~~ialDdfG~g~ssl~~L~~-----------l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~--~g 209 (259)
T 3s83_A 143 VILKTLRDAGAGLALDDFGTGFSSLSYLTR-----------LPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQD--LD 209 (259)
T ss_dssp HHHHHHHHHTCEEEEECC---CHHHHHHHH-----------SCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHCCCEEEEECCCCCchhHHHHHh-----------CCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHH--CC
Confidence 344567888998765 4566667777643 479999999632 1 22233455555543332 23
Q ss_pred ccEEEEeccCCHHHHHHHHHcCCCE----EEeCCCCHHHHHHHHHH
Q 001330 1050 IPIIALTAHAMAGVASKIVDAGMDF----HLTKPLQKDKLLDVVKS 1091 (1099)
Q Consensus 1050 ipIIalTa~~~~~~~~~~l~aG~dd----yL~KPi~~~~L~~~l~~ 1091 (1099)
+.+| ..+-.+.++...+.+.|++. |+.||...+++...+..
T Consensus 210 ~~vi-aeGVEt~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 210 LEVV-AEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp CEEE-ECCCCSHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred CeEE-EEeCCCHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 4444 56777888888999999986 48899999999877654
No 340
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=25.85 E-value=3.1e+02 Score=29.90 Aligned_cols=80 Identities=16% Similarity=0.079 Sum_probs=55.9
Q ss_pred HHHhhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC-----CCCHHHHHHHHhccccccCCCccEE
Q 001330 980 AVLGKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP-----VMNGWEATRLIRKEEEQYDVHIPII 1053 (1099)
Q Consensus 980 ~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP-----~mdG~e~~r~IR~~~~~~~~~ipII 1053 (1099)
..+++.|..+. .+.+.++|..... ...|.|+++-.-+ ....+++++++++. ..+|||
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~------------~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~-----~~iPvi 180 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVER------------AGADAVIAEGMESGGHIGEVTTFVLVNKVSRS-----VNIPVI 180 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHH------------TTCSCEEEECTTSSEECCSSCHHHHHHHHHHH-----CSSCEE
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHH------------cCCCEEEEECCCCCccCCCccHHHHHHHHHHH-----cCCCEE
Confidence 34455676654 4677777765542 2478888864221 13467888888753 258999
Q ss_pred EEeccCCHHHHHHHHHcCCCEEE
Q 001330 1054 ALTAHAMAGVASKIVDAGMDFHL 1076 (1099)
Q Consensus 1054 alTa~~~~~~~~~~l~aG~ddyL 1076 (1099)
+-.+-.+.++..+++.+|++.+.
T Consensus 181 aaGGI~~~~dv~~al~~GA~gV~ 203 (326)
T 3bo9_A 181 AAGGIADGRGMAAAFALGAEAVQ 203 (326)
T ss_dssp EESSCCSHHHHHHHHHHTCSEEE
T ss_pred EECCCCCHHHHHHHHHhCCCEEE
Confidence 98888889999999999999874
No 341
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=25.79 E-value=2e+02 Score=28.34 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=29.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhh--cCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEec
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGK--LGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC 1025 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~--~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi 1025 (1099)
.|++||+||-|+... +...+.. .++.+..+.. +.+..+ ++.+ ...||+||+|+
T Consensus 29 ~g~~vlliD~D~~~~--~~~~~~~~~~~~~~~~~~~--~~l~~~---l~~l-----~~~yD~viiD~ 83 (206)
T 4dzz_A 29 SGYNIAVVDTDPQMS--LTNWSKAGKAAFDVFTAAS--EKDVYG---IRKD-----LADYDFAIVDG 83 (206)
T ss_dssp TTCCEEEEECCTTCH--HHHHHTTSCCSSEEEECCS--HHHHHT---HHHH-----TTTSSEEEEEC
T ss_pred CCCeEEEEECCCCCC--HHHHHhcCCCCCcEEecCc--HHHHHH---HHHh-----cCCCCEEEEEC
Confidence 357899999886432 3334432 3355555543 222222 1111 23599999997
No 342
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=25.51 E-value=2.8e+02 Score=25.69 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=52.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCH-HHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNG-KEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g-~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
+..|.++|.|+...+.+. +.|+.+....-. .+.++.. .....|+|+.-..-+. .-..++..+|
T Consensus 30 g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a-----------~i~~ad~vi~~~~~~~-~n~~~~~~a~ 93 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLA-----------HLECAKWLILTIPNGY-EAGEIVASAR 93 (140)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHT-----------TGGGCSEEEECCSCHH-HHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhc-----------CcccCCEEEEECCChH-HHHHHHHHHH
Confidence 346788888776554433 356665443211 1222221 1235788887543221 2234556666
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
+.. +.++||+... +.+......++|+|..+.
T Consensus 94 ~~~----~~~~iiar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 94 AKN----PDIEIIARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp HHC----SSSEEEEEES--SHHHHHHHHHTTCSEEEE
T ss_pred HHC----CCCeEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 542 3467777663 456667778899998774
No 343
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=25.45 E-value=4.6e+02 Score=28.13 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=50.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEE-eCCCCHHHHHHHHHH
Q 001330 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL-TKPLQKDKLLDVVKS 1091 (1099)
Q Consensus 1016 ~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL-~KPi~~~~L~~~l~~ 1091 (1099)
..+|.|++|+.=...+--++...++.... ...++++=+...+..+...++++|++..+ .|--+.+++.+.++.
T Consensus 59 ~GaD~v~lDlEh~~~~~~~~~~~l~a~~~---~~~~~~VRv~~~d~~di~~~ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 59 AGFDWLLIDGEHAPNNVQTVLTQLQAIAP---YPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp SCCSEEEEESSSSSCCHHHHHHHHHHHTT---SSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCccchHHHHHHHHHHHHh---cCCCEEEEECCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 46999999997665665555555554321 13566766777778899999999999864 444567887766654
No 344
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=25.19 E-value=3.3e+02 Score=30.66 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhc-CCeEE--EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCC-----------CCCCHHHHHHH
Q 001330 973 IVLKVTSAVLGKL-GAKFE--VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM-----------PVMNGWEATRL 1038 (1099)
Q Consensus 973 ~~~~~l~~~L~~~-G~~v~--~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~M-----------P~mdG~e~~r~ 1038 (1099)
...+.++.+-+.. +..+. .+.+.++|..+.+ ...|.|.+-..- .+...+++++.
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~------------~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~ 247 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS------------VGADCLKVGIGPGSICTTRIVAGVGVPQITAICD 247 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT------------TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh------------cCCCEEEECCCCCcCcCccccCCCCcchHHHHHH
Confidence 3444444333333 55554 3567666654441 257888772100 02224566666
Q ss_pred HhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1039 IRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1039 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
+++... ...+|||+-.+-.+.++..+++.+|||....
T Consensus 248 v~~~~~--~~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 248 VYEACN--NTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp HHHHHT--TSSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHh--hcCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 664321 1368999999988999999999999998754
No 345
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=25.16 E-value=1.5e+02 Score=32.10 Aligned_cols=59 Identities=22% Similarity=0.195 Sum_probs=33.8
Q ss_pred CCEEEEEeCCHH---HHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH
Q 001330 962 GKKFLVVEDDAI---VLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG 1032 (1099)
Q Consensus 962 ~~~ILvVdDd~~---~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG 1032 (1099)
|++|++++-|.. ..+.+....+..|..+..+.++.+.-..+.. ...||+||+| .|+.+.
T Consensus 134 G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~----------~~~~dlvIiD--T~G~~~ 195 (296)
T 2px0_A 134 HKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL----------FSEYDHVFVD--TAGRNF 195 (296)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH----------GGGSSEEEEE--CCCCCT
T ss_pred CCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH----------hcCCCEEEEe--CCCCCh
Confidence 568999988763 2233444444556555445555443223221 1358999999 566554
No 346
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=25.13 E-value=45 Score=31.20 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=30.0
Q ss_pred chhhHhhhcCCCCcccccccccccccceeeeeeee---CCC--ceEEeccchHHH
Q 001330 176 ASWFQEVINSTNGYSSLVTGLNKEEGSIFLHTFAM---DGT--GFISLGFPAKVV 225 (1099)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~i~~~~~~~~~ 225 (1099)
.+||.+++.+. .+.+.+++. .+..+...+|| +|+ |+|++|+.+..|
T Consensus 78 ~~~~~~al~G~-~~~~~~~g~---~g~~~~~~~PV~~~~g~viGvv~vg~~l~~v 128 (131)
T 1p0z_A 78 GDSDEALINAK-SYVSVRKGS---LGSSLRGKSPIQDATGKVIGIVSVGYTIEQL 128 (131)
T ss_dssp SCCHHHHHHCC-CEEEEEEET---TEEEEEEEEEEECTTCCEEEEEEEEEEGGGC
T ss_pred CCcHHHHhCCC-eEEEEEEcc---ceeeEEEEEeEECCCCCEEEEEEEEEEhHHh
Confidence 56899999743 344444332 33446666787 355 999999988765
No 347
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=25.05 E-value=1.1e+02 Score=31.23 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=40.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1017 PYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1017 ~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
.||+| =-||+.-- ++++++++. ..+|||+=-.-.+.++..+|+++||+..-+
T Consensus 127 ~PD~i---EiLPGi~p-~iI~~i~~~-----~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 127 QPDCI---ELLPGIIP-EQVQKMTQK-----LHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp CCSEE---EEECTTCH-HHHHHHHHH-----HCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred CCCEE---EECCchhH-HHHHHHHHh-----cCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 67877 22687653 788888864 258999888788999999999999998754
No 348
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=24.46 E-value=5.9e+02 Score=29.48 Aligned_cols=100 Identities=16% Similarity=0.082 Sum_probs=62.9
Q ss_pred CEEEEEe----CCHHHHHHHHHHHhhc-CCeEEE--ECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC------
Q 001330 963 KKFLVVE----DDAIVLKVTSAVLGKL-GAKFEV--CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV------ 1029 (1099)
Q Consensus 963 ~~ILvVd----Dd~~~~~~l~~~L~~~-G~~v~~--a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~------ 1029 (1099)
..+++++ ..+...+.++.+-+.. +..+.. +.+.++|..+.. ...|.|.+-. -|+
T Consensus 242 ~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~------------aGaD~I~vg~-g~Gs~~~t~ 308 (490)
T 4avf_A 242 VDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAE------------AGADAVKVGI-GPGSICTTR 308 (490)
T ss_dssp CSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH------------TTCSEEEECS-SCSTTCHHH
T ss_pred cceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHH------------cCCCEEEECC-CCCcCCCcc
Confidence 3466665 3344445555555554 334433 577777766553 2578888732 111
Q ss_pred ------CCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1030 ------MNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1030 ------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
...++++.++++.-. ...+|||+-.+-.+.+++.+++.+||+..+.
T Consensus 309 ~~~g~g~p~~~~l~~v~~~~~--~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 309 IVAGVGVPQISAIANVAAALE--GTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp HHTCBCCCHHHHHHHHHHHHT--TTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ccCCCCccHHHHHHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 234566666664321 1358999999999999999999999998754
No 349
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=24.37 E-value=1.3e+02 Score=28.34 Aligned_cols=58 Identities=10% Similarity=0.121 Sum_probs=37.9
Q ss_pred ccccccccCCccccCchhhHhhhcCCCCcccccccccccccceeeeeeee-C--CC--ceEEeccchHHHHHHhh
Q 001330 161 LYGNAIASIPIVSANASWFQEVINSTNGYSSLVTGLNKEEGSIFLHTFAM-D--GT--GFISLGFPAKVVIDLFA 230 (1099)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~--~~i~~~~~~~~~~~~~~ 230 (1099)
.+|+.+ . . .+|.+++.+. .+.+.+. ...+..+...+|| + |+ |+|++|+++..+...+.
T Consensus 76 ~iG~~~------~-~-~~~~~al~G~-~~~~~~~---~~~g~~~~~~~PV~~~~g~viGvv~vg~~~~~~~~~~~ 138 (142)
T 3by8_A 76 RIGQPF------K-G-DDILKALNGE-ENVAINR---GFLAQALRVFTPIYDENHKQIGVVAIGLELSRVTQQIN 138 (142)
T ss_dssp GTTSBC------C-C-GGGTGGGGTC-CEEEEEC---SSSSCEEEEEEEEECTTSCEEEEEEEEEEHHHHHHHHH
T ss_pred HCCCcC------C-C-CCHHHHhCCC-eEEEEec---CccEEEEEEEEeEEcCCCCEEEEEEEeEEHHHHHHHHH
Confidence 567765 1 2 5788888743 3333332 2233456677787 3 45 99999999999988765
No 350
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=23.95 E-value=1.6e+02 Score=31.10 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhhhhhhcCCCCCccEEEEec--CCCCCC--------------------HHHHHHHHhccccccCCCcc
Q 001330 994 NGKEAFDHVCKILSDLRKEGKALPYDYIMMDC--EMPVMN--------------------GWEATRLIRKEEEQYDVHIP 1051 (1099)
Q Consensus 994 ~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi--~MP~md--------------------G~e~~r~IR~~~~~~~~~ip 1051 (1099)
+..+.++.++.. .....|.|-++. .-|.|| +++.++++|+. .++|
T Consensus 30 ~~~~~~~~~~~l--------~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~-----~~~P 96 (262)
T 1rd5_A 30 DLATTAEALRLL--------DGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPE-----LSCP 96 (262)
T ss_dssp CHHHHHHHHHHH--------HHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGG-----CSSC
T ss_pred CHHHHHHHHHHH--------HHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-----CCCC
Q ss_pred EEEEeccCCHH--HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1052 IIALTAHAMAG--VASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1052 IIalTa~~~~~--~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+++++-..... ....|.++|+|+++.-....+++.+.+..+.+.
T Consensus 97 v~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~~~ 142 (262)
T 1rd5_A 97 VVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNN 142 (262)
T ss_dssp EEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHT
T ss_pred EEEEecCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHHc
No 351
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=22.99 E-value=4e+02 Score=31.72 Aligned_cols=101 Identities=10% Similarity=0.088 Sum_probs=64.1
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC-C-H
Q 001330 962 GKKFLVV----EDDAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM-N-G 1032 (1099)
Q Consensus 962 ~~~ILvV----dDd~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m-d-G 1032 (1099)
+.+||++ |-+..-..++..+|+..||+|... -..++.++.+.+ ..+|+|.+-..|..- + -
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~-----------~~~diVgLS~l~t~~~~~m 166 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKE-----------VNADLIGLSGLITPSLDEM 166 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHH-----------HTCSEEEEECCSTHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------cCCCEEEEEecCCCCHHHH
Confidence 4578887 667777888999999999999754 345566666643 379999999887531 1 1
Q ss_pred HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHH---HcCCCEEEe
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV---DAGMDFHLT 1077 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l---~aG~ddyL~ 1077 (1099)
-++++++|+. +.++||++--+....+.....+ -.|+|.|-.
T Consensus 167 ~~~i~~Lr~~----g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~ 210 (579)
T 3bul_A 167 VNVAKEMERQ----GFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQ 210 (579)
T ss_dssp HHHHHHHHHT----TCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECC
T ss_pred HHHHHHHHHc----CCCCeEEEEccccchhhhhhhhhhcccCCeEEEC
Confidence 2355666653 3468876655444444322111 128888754
No 352
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=22.56 E-value=5.9e+02 Score=26.78 Aligned_cols=73 Identities=11% Similarity=0.121 Sum_probs=50.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEE-EeCCCCHHHHHHHHHH
Q 001330 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH-LTKPLQKDKLLDVVKS 1091 (1099)
Q Consensus 1016 ~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddy-L~KPi~~~~L~~~l~~ 1091 (1099)
..+|.|++|+.=...+--++...++.... ...++++=+...+..+...++++|++.. +.|=-+.+++...++.
T Consensus 38 ~GaD~v~lDlE~~~~~~~~~~~~~~a~~~---~~~~~~VRv~~~~~~~i~~~l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 38 SGYDWLLIDGEHAPNTIQDLYHQLQAVAP---YASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp TCCSEEEEETTTSCCCHHHHHHHHHHHTT---SSSEEEEECSSCCHHHHHHHHHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 46999999997766666666666664322 1345666566667889999999999975 4444567887766554
No 353
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=22.53 E-value=3.6e+02 Score=26.78 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=54.3
Q ss_pred HHhhcCCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccC
Q 001330 981 VLGKLGAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHA 1059 (1099)
Q Consensus 981 ~L~~~G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~ 1059 (1099)
.|.+.+.-. ....+..++.+.+... . ....|+|-+....| ++.+.++.+|+..+ .+. +|.+..-.
T Consensus 6 ~~~~~~~i~~~~~~~~~~~~~~~~~~----~----~~G~~~iev~~~~~--~~~~~i~~ir~~~~---~~~-~ig~~~v~ 71 (205)
T 1wa3_A 6 LFKKHKIVAVLRANSVEEAKEKALAV----F----EGGVHLIEITFTVP--DADTVIKELSFLKE---KGA-IIGAGTVT 71 (205)
T ss_dssp HHHHHCEEEEECCSSHHHHHHHHHHH----H----HTTCCEEEEETTST--THHHHHHHTHHHHH---TTC-EEEEESCC
T ss_pred HHhhCCEEEEEecCCHHHHHHHHHHH----H----HCCCCEEEEeCCCh--hHHHHHHHHHHHCC---CCc-EEEecccC
Confidence 344445433 2345666666555432 1 12467776665554 67788888887522 122 34443334
Q ss_pred CHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 001330 1060 MAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089 (1099)
Q Consensus 1060 ~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l 1089 (1099)
+.++...+.++|+|.. .-|....++.+..
T Consensus 72 ~~~~~~~a~~~Gad~i-v~~~~~~~~~~~~ 100 (205)
T 1wa3_A 72 SVEQCRKAVESGAEFI-VSPHLDEEISQFC 100 (205)
T ss_dssp SHHHHHHHHHHTCSEE-ECSSCCHHHHHHH
T ss_pred CHHHHHHHHHcCCCEE-EcCCCCHHHHHHH
Confidence 6778889999999977 5576555444433
No 354
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=21.54 E-value=3.6e+02 Score=29.04 Aligned_cols=90 Identities=18% Similarity=0.137 Sum_probs=0.0
Q ss_pred EEEEeCCHHH----HHHHHHHHhhcCCe---EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHH
Q 001330 965 FLVVEDDAIV----LKVTSAVLGKLGAK---FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATR 1037 (1099)
Q Consensus 965 ILvVdDd~~~----~~~l~~~L~~~G~~---v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r 1037 (1099)
+||.||+... ...++..-+..|.. -..+.+.+|+.+.+.. ..|+|.+|-.-| +.++
T Consensus 169 ~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a------------GaD~I~ld~~~~-----~~~k 231 (286)
T 1x1o_A 169 ILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA------------GADLILLDNFPL-----EALR 231 (286)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH------------TCSEEEEESCCH-----HHHH
T ss_pred eEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc------------CCCEEEECCCCH-----HHHH
Q ss_pred HHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEE
Q 001330 1038 LIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH 1075 (1099)
Q Consensus 1038 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddy 1075 (1099)
++.+.-.. ++|+++ ++.-..+......++|+|.+
T Consensus 232 ~av~~v~~---~ipi~A-sGGIt~eni~~~a~tGvD~I 265 (286)
T 1x1o_A 232 EAVRRVGG---RVPLEA-SGNMTLERAKAAAEAGVDYV 265 (286)
T ss_dssp HHHHHHTT---SSCEEE-ESSCCHHHHHHHHHHTCSEE
T ss_pred HHHHHhCC---CCeEEE-EcCCCHHHHHHHHHcCCCEE
No 355
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=21.28 E-value=90 Score=31.78 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=44.1
Q ss_pred CccEEEEecCCCCCCHH-------HHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEE-----eCCCCHHH
Q 001330 1017 PYDYIMMDCEMPVMNGW-------EATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHL-----TKPLQKDK 1084 (1099)
Q Consensus 1017 ~~DlIlmDi~MP~mdG~-------e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL-----~KPi~~~~ 1084 (1099)
..|.|+.+...|+.+|. +-++++|+........+||++--+ -..+...++.++|+|.++ .+.-++.+
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GG-I~~~~~~~~~~~Gad~vvvGsai~~~~d~~~ 209 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGG-VDNKTIRACYEAGANVFVAGSYLFKASDLVS 209 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESS-CCTTTHHHHHHHTCCEEEESHHHHTSSCHHH
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECc-CCHHHHHHHHHcCCCEEEEChHHhCCCCHHH
Confidence 37899888877776653 345566653221112467665444 446777788999999874 35555554
Q ss_pred HHHHHH
Q 001330 1085 LLDVVK 1090 (1099)
Q Consensus 1085 L~~~l~ 1090 (1099)
-.+.++
T Consensus 210 a~~~~~ 215 (220)
T 2fli_A 210 QVQTLR 215 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 356
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=20.93 E-value=4.5e+02 Score=30.58 Aligned_cols=90 Identities=13% Similarity=0.057 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhc-CCeEE--EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEec--------------CCCCCCHHHHH
Q 001330 974 VLKVTSAVLGKL-GAKFE--VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDC--------------EMPVMNGWEAT 1036 (1099)
Q Consensus 974 ~~~~l~~~L~~~-G~~v~--~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi--------------~MP~mdG~e~~ 1036 (1099)
..+.++.+-+.. +..+. .+.+.++|..+... ..|.|.+-. .+|....+..+
T Consensus 283 ~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a------------Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~ 350 (514)
T 1jcn_A 283 QIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA------------GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKV 350 (514)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH------------TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEecccchHHHHHHHHHc------------CCCEEEECCCCCcccccccccCCCccchhHHHHH
Confidence 345555554444 55554 36777777655532 467776632 12223345666
Q ss_pred HHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEE-EeCCC
Q 001330 1037 RLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH-LTKPL 1080 (1099)
Q Consensus 1037 r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddy-L~KPi 1080 (1099)
+++++. ..+|||+-.+-.+..++.+++.+||+.. +..|+
T Consensus 351 ~~~~~~-----~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~ 390 (514)
T 1jcn_A 351 AEYARR-----FGVPIIADGGIQTVGHVVKALALGASTVMMGSLL 390 (514)
T ss_dssp HHHHGG-----GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHhh-----CCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHH
Confidence 666642 2589999999889999999999999986 44444
No 357
>2qhk_A Methyl-accepting chemotaxis protein; structural genomics, PSI-2, MCSG, protein structur initiative; 1.91A {Vibrio parahaemolyticus}
Probab=20.48 E-value=2.5e+02 Score=27.26 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=24.0
Q ss_pred chHHHHHHhhhhhc-cccEEEEEcCCCcEEE
Q 001330 221 PAKVVIDLFAALDF-HGGDLHLAAADGQVII 250 (1099)
Q Consensus 221 ~~~~~~~~~~~~~~-~~~~~~~~~~~G~~v~ 250 (1099)
..+.+.+.++.+++ .+||++|.|.+|.+|+
T Consensus 48 ~~~~l~~~l~~~~~g~~GY~fi~d~~G~~i~ 78 (174)
T 2qhk_A 48 NKQAAKEILKAMRFESDGYFFAYDSQGINTL 78 (174)
T ss_dssp THHHHHHHHHHCCSBTTBCCEEECTTSBEEE
T ss_pred HHHHHHHHHHhcEECCCCEEEEEeCCCCEEE
Confidence 35667777777765 5589999999999999
No 358
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=20.43 E-value=3.7e+02 Score=29.16 Aligned_cols=108 Identities=11% Similarity=0.024 Sum_probs=68.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEE--CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVC--RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a--~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+++++.+.+. ..+..++++..-.|... -+..+..+.+. ..|++++=-.-.+.-|.-+++.+.
T Consensus 241 ~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~-------------~adv~v~ps~~~e~~~~~~~Ea~a 305 (406)
T 2gek_A 241 VEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMR-------------SADVYCAPHLGGESFGIVLVEAMA 305 (406)
T ss_dssp CEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHH-------------HSSEEEECCCSCCSSCHHHHHHHH
T ss_pred eEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHH-------------HCCEEEecCCCCCCCchHHHHHHH
Confidence 47888887766 55666665543334443 34444455553 358877642212233556666665
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
. .+|+|+-. . ....+.+..|-++++..|-+.++|.+.|.++++..
T Consensus 306 ~-------G~PvI~~~-~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~ 350 (406)
T 2gek_A 306 A-------GTAVVASD-L---DAFRRVLADGDAGRLVPVDDADGMAAALIGILEDD 350 (406)
T ss_dssp H-------TCEEEECC-C---HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCH
T ss_pred c-------CCCEEEec-C---CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcCH
Confidence 2 36877532 1 34556777788999999999999999999987643
No 359
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=20.35 E-value=2.7e+02 Score=29.89 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=30.5
Q ss_pred CCEEEEEeCCHHH---HHHHHHHHhhcCCeEEEEC---CHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC
Q 001330 962 GKKFLVVEDDAIV---LKVTSAVLGKLGAKFEVCR---NGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE 1026 (1099)
Q Consensus 962 ~~~ILvVdDd~~~---~~~l~~~L~~~G~~v~~a~---~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~ 1026 (1099)
+.+|+++|-|... ...+....+..|..+..+. +..+.+... +.... ...||+||+|.-
T Consensus 126 ~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~---l~~~~----~~~~D~viiDtp 189 (295)
T 1ls1_A 126 GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV---EEKAR----LEARDLILVDTA 189 (295)
T ss_dssp TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH---HHHHH----HHTCCEEEEECC
T ss_pred CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHH---HHHHH----hCCCCEEEEeCC
Confidence 4679999887432 2223344455677776543 333321111 11111 126999999973
No 360
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=20.23 E-value=1.3e+02 Score=31.33 Aligned_cols=57 Identities=14% Similarity=0.038 Sum_probs=37.3
Q ss_pred CHHHHHHHHhccccccCCCccEE--EEeccCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHH
Q 001330 1031 NGWEATRLIRKEEEQYDVHIPII--ALTAHAMAGVASKIVDAGMDFHLTKPL--QKDKLLDVVKSID 1093 (1099)
Q Consensus 1031 dG~e~~r~IR~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~ddyL~KPi--~~~~L~~~l~~i~ 1093 (1099)
.|.+.++.||+.. +.|+. +++.+ .......|.++|+|....-.. ..+...+.++.+.
T Consensus 49 ~g~~~v~~lr~~~-----~~~~~vhlmv~d-p~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~ 109 (230)
T 1tqj_A 49 IGPLIVDAIRPLT-----KKTLDVHLMIVE-PEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIR 109 (230)
T ss_dssp BCHHHHHHHGGGC-----CSEEEEEEESSS-GGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHH
T ss_pred hhHHHHHHHHhhc-----CCcEEEEEEccC-HHHHHHHHHHcCCCEEEECcccccchhHHHHHHHHH
Confidence 3679999999642 34555 66743 344678899999999866554 3345555555543
No 361
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=20.06 E-value=5.9e+02 Score=28.05 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=52.9
Q ss_pred hcCCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecC---------CC-----C--CCHHHHHHHHhcccccc
Q 001330 984 KLGAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCE---------MP-----V--MNGWEATRLIRKEEEQY 1046 (1099)
Q Consensus 984 ~~G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~---------MP-----~--mdG~e~~r~IR~~~~~~ 1046 (1099)
+.|..+ ..+.+.++|..... ...|.|+++-. .+ . .+.+++++++++.
T Consensus 143 ~~g~~v~~~v~t~~~a~~a~~------------~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~---- 206 (369)
T 3bw2_A 143 RAGTLTLVTATTPEEARAVEA------------AGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREA---- 206 (369)
T ss_dssp HTTCEEEEEESSHHHHHHHHH------------TTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHH----
T ss_pred HCCCeEEEECCCHHHHHHHHH------------cCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHh----
Confidence 346554 34677777655442 24788888541 11 0 3448889998863
Q ss_pred CCCccEEEEeccCCHHHHHHHHHcCCCEEE
Q 001330 1047 DVHIPIIALTAHAMAGVASKIVDAGMDFHL 1076 (1099)
Q Consensus 1047 ~~~ipIIalTa~~~~~~~~~~l~aG~ddyL 1076 (1099)
..+|||+..+-.+.++..++++.|+|.+.
T Consensus 207 -~~iPViaaGGI~~~~~~~~~l~~GAd~V~ 235 (369)
T 3bw2_A 207 -VDIPVVAAGGIMRGGQIAAVLAAGADAAQ 235 (369)
T ss_dssp -CSSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred -cCceEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 25899988888789999999999999864
Done!