Query 001330
Match_columns 1099
No_of_seqs 665 out of 5197
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 22:37:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001330.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001330hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c2aa2 d.122.1.3 (A:321-481) 100.0 2.7E-32 2E-36 276.4 20.3 155 462-666 1-159 (161)
2 d1ysra1 d.122.1.3 (A:299-446) 100.0 2.3E-30 1.7E-34 258.2 16.2 145 465-666 3-147 (148)
3 d1id0a_ d.122.1.3 (A:) Histidi 100.0 4.1E-29 3E-33 248.5 18.2 143 466-665 2-144 (146)
4 d1bxda_ d.122.1.3 (A:) Histidi 100.0 2.6E-29 1.9E-33 254.1 16.0 148 462-667 4-151 (161)
5 d1r62a_ d.122.1.3 (A:) Nitroge 99.9 4.1E-26 3E-30 229.4 14.0 154 466-666 2-155 (156)
6 d1jm6a2 d.122.1.4 (A:1177-1366 99.9 1.8E-25 1.3E-29 231.9 18.1 152 467-666 10-179 (190)
7 d1gkza2 d.122.1.4 (A:186-378) 99.9 9.7E-26 7.1E-30 234.8 16.1 149 465-665 7-187 (193)
8 d1zesa1 c.23.1.1 (A:3-123) Pho 99.9 1.5E-23 1.1E-27 201.4 16.8 120 963-1095 1-120 (121)
9 d1peya_ c.23.1.1 (A:) Sporulat 99.9 2.1E-23 1.5E-27 199.7 16.8 116 963-1093 2-117 (119)
10 d2pl1a1 c.23.1.1 (A:1-119) Pho 99.9 3.9E-23 2.8E-27 197.8 17.9 118 963-1095 1-118 (119)
11 d1dcfa_ c.23.1.2 (A:) Receiver 99.9 1.9E-23 1.4E-27 204.4 15.4 126 959-1096 4-130 (134)
12 d2a9pa1 c.23.1.1 (A:2-118) DNA 99.9 4.8E-23 3.5E-27 196.6 17.6 116 963-1094 1-116 (117)
13 d1dbwa_ c.23.1.1 (A:) Transcri 99.9 5.6E-23 4.1E-27 197.9 17.2 120 961-1095 2-121 (123)
14 d1mb3a_ c.23.1.1 (A:) Cell div 99.9 2.4E-23 1.8E-27 200.5 14.6 120 963-1095 2-121 (123)
15 d1ys7a2 c.23.1.1 (A:7-127) Tra 99.9 1.8E-23 1.3E-27 200.7 13.3 118 964-1096 3-120 (121)
16 d2r25b1 c.23.1.1 (B:1087-1214) 99.9 5E-23 3.6E-27 199.6 16.1 124 963-1095 2-126 (128)
17 d1mvoa_ c.23.1.1 (A:) PhoP rec 99.9 7.8E-23 5.7E-27 196.3 16.2 117 963-1094 3-119 (121)
18 d1u0sy_ c.23.1.1 (Y:) CheY pro 99.9 1.2E-22 8.8E-27 194.1 17.1 116 962-1092 1-117 (118)
19 d1zh2a1 c.23.1.1 (A:2-120) Tra 99.9 1.1E-22 8E-27 194.7 16.4 117 964-1096 2-118 (119)
20 d1krwa_ c.23.1.1 (A:) NTRC rec 99.9 4.2E-23 3E-27 198.8 13.4 120 962-1096 3-122 (123)
21 d1kgsa2 c.23.1.1 (A:2-123) Pho 99.9 9.9E-23 7.2E-27 195.9 15.5 120 963-1097 2-121 (122)
22 d1jbea_ c.23.1.1 (A:) CheY pro 99.9 3E-22 2.2E-26 194.2 18.3 122 962-1096 4-126 (128)
23 d2ayxa1 c.23.1.1 (A:817-949) S 99.9 1.3E-22 9.4E-27 198.0 15.6 123 961-1098 7-129 (133)
24 d1xhfa1 c.23.1.1 (A:2-122) Aer 99.9 2.8E-22 2.1E-26 192.3 17.5 117 963-1095 3-119 (121)
25 d1k68a_ c.23.1.1 (A:) Response 99.9 2.6E-22 1.9E-26 197.6 17.4 128 962-1095 2-131 (140)
26 d1qkka_ c.23.1.1 (A:) Transcri 99.9 2.6E-22 1.9E-26 197.7 16.5 119 964-1097 2-120 (140)
27 d1p6qa_ c.23.1.1 (A:) CheY pro 99.9 1.2E-22 8.5E-27 197.3 13.6 122 962-1096 6-128 (129)
28 d1zgza1 c.23.1.1 (A:2-121) Tor 99.9 5.5E-22 4E-26 190.1 17.9 119 963-1097 2-120 (120)
29 d1w25a1 c.23.1.1 (A:2-140) Res 99.9 7.1E-22 5.2E-26 194.3 17.7 121 963-1096 2-122 (139)
30 d1ny5a1 c.23.1.1 (A:1-137) Tra 99.9 4.8E-22 3.5E-26 195.0 16.3 120 963-1097 1-120 (137)
31 d1k66a_ c.23.1.1 (A:) Response 99.9 9.8E-22 7.1E-26 195.6 16.7 131 963-1096 7-139 (149)
32 d1i3ca_ c.23.1.1 (A:) Response 99.9 1.8E-21 1.3E-25 192.6 18.3 127 963-1095 4-132 (144)
33 d1s8na_ c.23.1.1 (A:) Probable 99.9 7.3E-22 5.3E-26 204.7 15.4 118 963-1096 4-122 (190)
34 d1yioa2 c.23.1.1 (A:3-130) Res 99.9 9.7E-22 7.1E-26 190.5 13.7 120 963-1097 3-122 (128)
35 d1dz3a_ c.23.1.1 (A:) Sporulat 99.9 1.6E-21 1.1E-25 187.6 15.0 118 963-1094 2-121 (123)
36 d1p2fa2 c.23.1.1 (A:1-120) Res 99.9 1.4E-21 1E-25 187.2 14.0 117 963-1097 3-119 (120)
37 d1w25a2 c.23.1.1 (A:141-293) R 99.9 3.7E-21 2.7E-25 192.1 17.0 122 961-1097 12-133 (153)
38 d1a04a2 c.23.1.1 (A:5-142) Nit 99.8 2.7E-20 2E-24 182.6 17.6 117 963-1094 3-121 (138)
39 d2b4aa1 c.23.1.1 (A:2-119) Hyp 99.8 4.3E-20 3.1E-24 176.0 10.6 113 963-1092 3-115 (118)
40 d1a2oa1 c.23.1.1 (A:1-140) Met 99.8 2E-18 1.5E-22 169.5 15.7 105 962-1081 3-110 (140)
41 d1ixma_ d.123.1.1 (A:) Sporula 99.7 1.6E-18 1.1E-22 174.8 10.9 164 394-631 9-179 (179)
42 d1qo0d_ c.23.1.3 (D:) Positive 99.7 2.3E-18 1.7E-22 177.6 11.6 116 960-1095 9-124 (189)
43 d2hkja3 d.122.1.2 (A:10-228) T 99.6 3.3E-15 2.4E-19 157.4 13.5 114 509-665 18-137 (219)
44 d2c2aa1 a.30.2.1 (A:232-320) S 99.5 2.5E-14 1.8E-18 128.6 11.4 77 385-461 11-89 (89)
45 d1i58a_ d.122.1.3 (A:) Histidi 99.3 2.6E-12 1.9E-16 130.2 13.6 71 593-666 119-189 (189)
46 d1th8a_ d.122.1.3 (A:) Anti-si 99.3 6.9E-12 5E-16 122.0 12.2 94 512-662 38-135 (139)
47 d1y8oa2 d.122.1.4 (A:177-301) 99.2 2.7E-11 2E-15 114.8 12.6 98 466-610 13-125 (125)
48 d1joya_ a.30.2.1 (A:) EnvZ his 99.1 3.8E-11 2.8E-15 101.3 5.2 58 392-455 10-67 (67)
49 d1h7sa2 d.122.1.2 (A:29-231) D 96.3 0.0096 7E-07 59.8 11.6 96 514-661 7-109 (203)
50 d1mb3a_ c.23.1.1 (A:) Cell div 96.1 0.014 1E-06 53.4 10.4 118 709-892 2-119 (123)
51 d1u0sy_ c.23.1.1 (Y:) CheY pro 96.0 0.012 9E-07 53.5 9.5 116 708-891 1-117 (118)
52 d1b63a2 d.122.1.2 (A:-2-216) D 95.8 0.0055 4E-07 62.4 6.8 88 514-653 25-118 (218)
53 d1ys7a2 c.23.1.1 (A:7-127) Tra 95.4 0.029 2.1E-06 51.2 9.7 114 710-891 3-116 (121)
54 d1peya_ c.23.1.1 (A:) Sporulat 95.2 0.037 2.7E-06 50.2 9.7 115 709-891 2-116 (119)
55 d1mvoa_ c.23.1.1 (A:) PhoP rec 95.2 0.05 3.6E-06 49.4 10.6 115 709-891 3-117 (121)
56 d1dcfa_ c.23.1.2 (A:) Receiver 94.8 0.02 1.5E-06 53.2 6.7 120 707-892 6-127 (134)
57 d2pl1a1 c.23.1.1 (A:1-119) Pho 94.8 0.051 3.7E-06 49.2 9.4 114 710-891 2-115 (119)
58 d1zesa1 c.23.1.1 (A:3-123) Pho 94.7 0.024 1.8E-06 51.6 7.0 117 709-891 1-117 (121)
59 d1kgsa2 c.23.1.1 (A:2-123) Pho 94.7 0.055 4E-06 49.2 9.5 114 710-891 3-116 (122)
60 d1dbwa_ c.23.1.1 (A:) Transcri 94.7 0.042 3.1E-06 50.1 8.6 115 709-891 4-118 (123)
61 d2r25b1 c.23.1.1 (B:1087-1214) 94.7 0.044 3.2E-06 50.4 8.8 120 710-891 3-123 (128)
62 d1w25a1 c.23.1.1 (A:2-140) Res 94.5 0.06 4.4E-06 50.1 9.3 117 709-891 2-118 (139)
63 d1k66a_ c.23.1.1 (A:) Response 94.4 0.067 4.9E-06 50.4 9.5 130 707-892 5-136 (149)
64 d2a9pa1 c.23.1.1 (A:2-118) DNA 94.1 0.09 6.5E-06 47.3 9.4 113 709-890 1-113 (117)
65 d2ayxa1 c.23.1.1 (A:817-949) S 94.1 0.054 3.9E-06 50.1 7.9 115 707-891 7-123 (133)
66 d1i3ca_ c.23.1.1 (A:) Response 93.9 0.09 6.5E-06 49.2 9.2 125 709-891 4-129 (144)
67 d1k68a_ c.23.1.1 (A:) Response 93.8 0.1 7.4E-06 48.6 9.3 126 708-891 2-128 (140)
68 d1jbea_ c.23.1.1 (A:) CheY pro 93.8 0.07 5.1E-06 48.9 8.0 119 708-892 4-123 (128)
69 d1p6qa_ c.23.1.1 (A:) CheY pro 93.7 0.087 6.3E-06 48.3 8.6 118 708-891 6-124 (129)
70 d1xhfa1 c.23.1.1 (A:2-122) Aer 93.2 0.13 9.1E-06 46.6 8.7 113 710-891 4-116 (121)
71 d1yioa2 c.23.1.1 (A:3-130) Res 93.2 0.099 7.2E-06 47.8 8.0 114 710-891 4-117 (128)
72 d2p7ja2 d.110.6.2 (A:9-180) GG 93.0 0.31 2.2E-05 46.5 11.7 105 99-229 55-172 (172)
73 d1ny5a1 c.23.1.1 (A:1-137) Tra 92.9 0.16 1.1E-05 47.0 8.9 114 710-891 2-115 (137)
74 d1zh2a1 c.23.1.1 (A:2-120) Tra 92.4 0.17 1.2E-05 45.5 8.3 113 710-891 2-114 (119)
75 d1pvga2 d.122.1.2 (A:7-245) DN 92.2 0.18 1.3E-05 51.3 9.1 55 591-645 88-154 (239)
76 d1krwa_ c.23.1.1 (A:) NTRC rec 92.1 0.073 5.3E-06 48.4 5.3 114 710-891 5-118 (123)
77 d1ccwa_ c.23.6.1 (A:) Glutamat 91.7 1.4 0.0001 40.3 14.2 119 962-1094 3-135 (137)
78 d1zgza1 c.23.1.1 (A:2-121) Tor 91.4 0.34 2.5E-05 43.4 9.2 114 709-891 2-115 (120)
79 d1qkka_ c.23.1.1 (A:) Transcri 90.7 0.2 1.4E-05 46.5 6.9 114 710-891 2-115 (140)
80 d1dz3a_ c.23.1.1 (A:) Sporulat 90.5 0.53 3.9E-05 42.3 9.6 116 710-891 3-119 (123)
81 d1s8na_ c.23.1.1 (A:) Probable 89.7 0.75 5.4E-05 44.5 10.7 113 709-890 4-117 (190)
82 d2b4aa1 c.23.1.1 (A:2-119) Hyp 89.1 0.73 5.3E-05 41.1 9.3 112 709-890 3-114 (118)
83 d1a04a2 c.23.1.1 (A:5-142) Nit 88.3 0.78 5.7E-05 42.0 9.1 116 709-891 3-119 (138)
84 d1ei1a2 d.122.1.2 (A:2-220) DN 87.9 0.31 2.3E-05 48.8 6.4 50 592-641 68-129 (219)
85 d7reqa2 c.23.6.1 (A:561-728) M 87.4 5.1 0.00037 37.8 14.6 119 963-1096 38-166 (168)
86 d1w25a2 c.23.1.1 (A:141-293) R 87.3 0.76 5.5E-05 43.0 8.5 116 707-890 12-127 (153)
87 d1kija2 d.122.1.2 (A:9-220) DN 86.7 0.54 3.9E-05 46.7 7.4 51 592-642 60-122 (212)
88 d1p2fa2 c.23.1.1 (A:1-120) Res 85.0 0.85 6.2E-05 40.7 7.2 71 816-891 44-114 (120)
89 d1qo0d_ c.23.1.3 (D:) Positive 77.7 2.8 0.00021 39.8 8.5 112 707-891 10-121 (189)
90 d1s14a_ d.122.1.2 (A:) Topoiso 76.0 1.2 8.9E-05 42.3 5.0 46 592-652 39-84 (168)
91 d1uyla_ d.122.1.1 (A:) HSP90 { 75.7 1.3 9.3E-05 43.7 5.2 59 591-653 72-140 (208)
92 d2iwxa1 d.122.1.1 (A:2-214) HS 72.0 1.7 0.00013 42.9 5.1 59 591-653 73-141 (213)
93 d2gqpa1 d.122.1.1 (A:74-337) H 70.6 1.6 0.00012 43.6 4.5 60 591-654 71-145 (227)
94 d1a2oa1 c.23.1.1 (A:1-140) Met 69.6 5.3 0.00038 36.1 7.8 39 710-749 5-45 (140)
95 d1xrsb1 c.23.6.1 (B:102-261) D 65.7 29 0.0021 31.9 12.3 112 969-1096 30-158 (160)
96 d3bula2 c.23.6.1 (A:741-896) M 58.3 27 0.0019 32.1 10.5 99 964-1077 8-118 (156)
97 d1xi3a_ c.1.3.1 (A:) Thiamin p 57.9 30 0.0022 33.0 11.3 90 988-1095 102-203 (206)
98 d3by8a1 d.110.6.1 (A:46-178) F 56.1 8.6 0.00063 34.5 6.4 50 177-230 78-132 (133)
99 d1kzyc2 c.15.1.4 (C:1867-1972) 51.1 2.3 0.00016 36.9 1.2 72 959-1053 2-76 (106)
100 d7reqb2 c.23.6.1 (B:476-638) M 49.4 14 0.001 34.3 6.8 99 975-1090 53-156 (163)
101 d1xm3a_ c.1.31.1 (A:) Thiazole 48.9 40 0.0029 33.0 10.2 98 978-1093 117-226 (251)
102 d1izca_ c.1.12.5 (A:) Macropho 47.9 77 0.0056 32.0 13.1 77 1016-1092 61-138 (299)
103 d1gtea2 c.1.4.1 (A:533-844) Di 41.7 13 0.00097 38.1 5.9 60 1033-1096 243-309 (312)
104 d2fhpa1 c.66.1.46 (A:1-182) Pu 41.0 33 0.0024 32.0 8.3 70 963-1041 65-137 (182)
105 d1id1a_ c.2.1.9 (A:) Rck domai 40.2 59 0.0043 28.8 9.8 98 962-1077 26-124 (153)
106 d1qpoa1 c.1.17.1 (A:117-285) Q 39.4 20 0.0015 33.4 6.2 69 989-1075 83-151 (169)
107 d1dxea_ c.1.12.5 (A:) 2-dehydr 38.5 1.4E+02 0.0099 29.1 12.9 72 1016-1090 36-108 (253)
108 d1ep3a_ c.1.4.1 (A:) Dihydroor 36.5 30 0.0022 35.0 7.7 58 1033-1095 230-293 (311)
109 d1p0za_ d.110.6.1 (A:) Sensor 36.1 12 0.00087 33.2 3.8 83 105-225 41-128 (131)
110 d1wv2a_ c.1.31.1 (A:) Thiazole 34.2 1.6E+02 0.012 28.5 12.3 101 977-1094 118-229 (243)
111 d1ws6a1 c.66.1.46 (A:15-185) M 33.7 34 0.0025 31.5 6.8 68 962-1040 63-132 (171)
112 d1ls1a2 c.37.1.10 (A:89-295) G 33.2 1.3E+02 0.0091 28.5 11.3 111 962-1077 38-156 (207)
113 d2qy9a2 c.37.1.10 (A:285-495) 32.9 96 0.007 29.5 10.3 110 962-1077 37-161 (211)
114 d2bm3a1 b.2.2.2 (A:5-166) Scaf 30.6 9.9 0.00072 34.7 2.1 29 150-178 45-74 (162)
115 d1o4ua1 c.1.17.1 (A:104-273) Q 29.5 19 0.0014 33.6 4.1 68 989-1074 82-149 (170)
116 d1zaka2 g.41.2.1 (A:128-158) M 29.5 8.5 0.00062 25.5 1.0 19 153-171 3-21 (31)
117 d1susa1 c.66.1.1 (A:21-247) Ca 28.5 68 0.0049 31.0 8.4 60 963-1028 85-147 (227)
118 d1y0ea_ c.1.2.5 (A:) Putative 28.4 33 0.0024 32.5 5.9 41 1032-1077 163-203 (222)
119 d1wx0a1 c.1.10.1 (A:1-211) Dec 28.0 36 0.0026 32.7 6.0 85 979-1076 103-192 (211)
120 d2tpsa_ c.1.3.1 (A:) Thiamin p 27.9 96 0.007 29.7 9.4 92 989-1097 119-223 (226)
121 d2fpoa1 c.66.1.46 (A:10-192) M 27.5 42 0.0031 31.2 6.4 67 963-1041 67-135 (183)
122 d1wa3a1 c.1.10.1 (A:2-203) KDP 27.2 1.2E+02 0.0086 28.6 9.7 96 979-1089 3-99 (202)
123 d1juba_ c.1.4.1 (A:) Dihydroor 26.8 18 0.0013 36.9 3.7 59 1034-1095 230-295 (311)
124 d1xj5a_ c.66.1.17 (A:) Spermid 25.9 54 0.0039 33.0 7.3 69 963-1042 105-184 (290)
125 d1geqa_ c.1.2.4 (A:) Trp synth 24.2 58 0.0042 32.0 6.9 50 1033-1087 69-124 (248)
126 d1thfd_ c.1.2.1 (D:) Cyclase s 23.9 2.7E+02 0.019 26.6 12.2 86 991-1091 149-243 (253)
127 d1j8yf2 c.37.1.10 (F:87-297) G 23.5 1.1E+02 0.0079 29.1 8.7 111 962-1078 40-162 (211)
128 d1mxsa_ c.1.10.1 (A:) KDPG ald 23.3 97 0.007 29.6 8.2 99 975-1089 7-106 (216)
129 d1vpxa_ c.1.10.1 (A:) Decameri 23.3 45 0.0033 32.2 5.7 94 972-1079 90-188 (218)
130 d1wl8a1 c.23.16.1 (A:1-188) GM 23.3 63 0.0046 29.6 6.8 91 964-1074 2-93 (188)
131 d2esra1 c.66.1.46 (A:28-179) P 23.1 66 0.0048 28.6 6.7 65 963-1041 38-107 (152)
132 d1tyja1 b.2.2.2 (A:2-171) Cell 22.3 10 0.00074 34.9 0.5 17 150-166 43-59 (170)
133 d2ifta1 c.66.1.46 (A:11-193) P 22.1 34 0.0025 31.9 4.5 67 963-1041 67-139 (183)
134 d1vmaa2 c.37.1.10 (A:82-294) G 21.6 1.4E+02 0.01 28.2 9.2 112 962-1077 39-163 (213)
135 d1wmaa1 c.2.1.2 (A:2-276) Carb 20.9 27 0.0019 34.8 3.5 26 625-650 11-36 (275)
136 d2b2ca1 c.66.1.17 (A:3-314) Sp 20.6 79 0.0058 32.1 7.3 67 963-1041 131-208 (312)
137 d1r8ja2 c.23.1.5 (A:1-135) N-t 20.1 2.7E+02 0.019 24.3 11.1 81 964-1059 6-86 (135)
No 1
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=99.98 E-value=2.7e-32 Score=276.38 Aligned_cols=155 Identities=25% Similarity=0.405 Sum_probs=126.2
Q ss_pred cceEEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCe----EEEE
Q 001330 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGH----ISVR 537 (1099)
Q Consensus 462 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~----I~v~ 537 (1099)
+|++++|||.++++++++.++..+..+++++.++...+. +..+.+|+.+|+|||.|||+||+|||++|. |.+.
T Consensus 1 el~~e~v~l~~li~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~v~~D~~~l~qvl~NLi~NAik~t~~~~~~~~i~i~ 77 (161)
T d2c2aa2 1 QINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPC---PVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVI 77 (161)
T ss_dssp CCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCS---CCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEE
T ss_pred CCccEEECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCC---CEEEEECHHHHHHHHHHHHHHHHHhhhcCCCcceeeEE
Confidence 467899999999999999999999999999988754322 347899999999999999999999998764 4444
Q ss_pred EEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhcccccccc
Q 001330 538 AAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVK 617 (1099)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d 617 (1099)
+...+ ..+.|+|.|+|+|||++++++||+||||.+
T Consensus 78 ~~~~~---------------------------------------------~~~~i~V~D~G~GI~~~~~~~iF~~F~~~~ 112 (161)
T d2c2aa2 78 LDEKD---------------------------------------------GGVLIIVEDNGIGIPDHAKDRIFEQFYRVD 112 (161)
T ss_dssp EEEET---------------------------------------------TEEEEEEEECSSCCCGGGTTGGGSTTCCCC
T ss_pred EEecC---------------------------------------------CEEEEEEEEcCCCCCHHHHHHhhCCcEEcC
Confidence 32211 157899999999999999999999999999
Q ss_pred ccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 618 ETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 618 ~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
.++++..+|+||||+|||+||++|||+|+++|.+ ++||+|+|.+|..
T Consensus 113 ~~~~~~~~G~GLGL~i~k~iv~~hgG~i~v~s~~--~~Gt~f~i~lP~~ 159 (161)
T d2c2aa2 113 SSLTYEVPGTGLGLAITKEIVELHGGRIWVESEV--GKGSRFFVWIPKD 159 (161)
T ss_dssp ---------CCCTHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEECC
T ss_pred CCCCCCCCcccHHHHHHHHHHHHCCCEEEEEecC--CCeeEEEEEEEcc
Confidence 8877777899999999999999999999998876 3699999999974
No 2
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.97 E-value=2.3e-30 Score=258.23 Aligned_cols=145 Identities=21% Similarity=0.370 Sum_probs=114.8
Q ss_pred EEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEeccc
Q 001330 465 EEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKS 544 (1099)
Q Consensus 465 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~ 544 (1099)
.+++||.+++++++..+...+.+++ +.+.+.+ ...|.+|+.+|+|+|.|||+||+||++.|.|.+++...+.
T Consensus 3 ~~pvdl~~l~~~~~~~~~~~~~~~~--i~~~~~~-----~~~v~~d~~~l~~vl~NLl~NAiky~~~~~I~i~~~~~~~- 74 (148)
T d1ysra1 3 HVPVDITDLLDRAAHDAARIYPDLD--VSLVPSP-----TCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRA- 74 (148)
T ss_dssp CEEEEHHHHHHHHHHHHHHHSTTCE--EEECSCC-----CCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETT-
T ss_pred CCcccHHHHHHHHHHHHHHHcCCCc--EEEecCC-----CcEEEECHHHHHHHHHHHHHHHHHhcCCcEEEEEEEecCC-
Confidence 5789999999999999987765554 4444332 3479999999999999999999999988888877644322
Q ss_pred cchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCC
Q 001330 545 FKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQ 624 (1099)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~ 624 (1099)
.+.|+|.|+|+|||++++++||+||||.+.+ ..
T Consensus 75 --------------------------------------------~~~i~V~D~G~Gi~~~~~~~ife~f~r~~~~---~~ 107 (148)
T d1ysra1 75 --------------------------------------------GVEIAIDDNGSGVPEGERQVVFERFSRGSTA---SH 107 (148)
T ss_dssp --------------------------------------------EEEEEEEESSSCCCGGGHHHHHTSCC----------
T ss_pred --------------------------------------------EEEEEEEEcCCCCCHHHHHHhcCccccCCCC---CC
Confidence 5789999999999999999999999997653 23
Q ss_pred CCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 625 EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 625 ~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
+|+||||+|||+|+++|||+|+++|++ +.|++|+|.+|++
T Consensus 108 ~G~GLGL~i~~~iv~~hgG~i~~~s~~--~~Gt~f~i~lP~~ 147 (148)
T d1ysra1 108 SGSGLGLALVAQQAQLHGGTASLENSP--LGGARLVLRLPGP 147 (148)
T ss_dssp ----CCCHHHHHHHHHTTCEEEEEECT--TSSEEEEEEEECC
T ss_pred CCccHHHHHHHHHHHHcCCEEEEEEcC--CCeEEEEEEEEcC
Confidence 699999999999999999999998776 3599999999975
No 3
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=4.1e-29 Score=248.50 Aligned_cols=143 Identities=23% Similarity=0.388 Sum_probs=123.4
Q ss_pred EEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEecccc
Q 001330 466 EEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSF 545 (1099)
Q Consensus 466 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~ 545 (1099)
+.+++.++++++++.++..+..|++++.++.++. ..+.+|+.+|.|||.|||+||+|||++ .|.|.+...++
T Consensus 2 e~~~l~~ll~~~~~~~~~~~~~k~i~i~~~~~~~-----~~~~~d~~~l~~vl~NLl~NAik~~~~-~i~i~~~~~~~-- 73 (146)
T d1id0a_ 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPE-----ISFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQTDE-- 73 (146)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTT-----CEEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEECSS--
T ss_pred CccCHHHHHHHHHHHHHHHHHHCCCEEEEEcCCC-----cEEEECHHHHHHHHHHHHHHHHHhhcC-CEEEEEEeeCC--
Confidence 4568999999999999999999999999886432 368999999999999999999999975 46665543221
Q ss_pred chhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCC
Q 001330 546 KQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625 (1099)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~ 625 (1099)
.+.|+|.|+|+|||++++++||+||||.+.++ +
T Consensus 74 -------------------------------------------~~~i~V~D~G~Gi~~~~~~~iF~~F~r~~~~~----~ 106 (146)
T d1id0a_ 74 -------------------------------------------HLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR----P 106 (146)
T ss_dssp -------------------------------------------CEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC----T
T ss_pred -------------------------------------------EEEEEEEeeCCCCCHHHHHHHcCCcccCCCCC----C
Confidence 47899999999999999999999999987643 5
Q ss_pred CccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 626 GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
|+||||+|||+||++|||+|+++++++ .|++|++.+|.
T Consensus 107 G~GLGL~I~k~iv~~h~G~i~~~s~~~--~Gt~f~i~lP~ 144 (146)
T d1id0a_ 107 GQGVGLAVAREITEQYEGKIVAGESML--GGARMEVIFGR 144 (146)
T ss_dssp TCCSCHHHHHHHHHHTTCEEEEEECTT--SSEEEEEEECC
T ss_pred CeeHHHHHHHHHHHHcCCEEEEEEcCC--CeeEEEEEEeC
Confidence 999999999999999999999987653 59999999885
No 4
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=2.6e-29 Score=254.11 Aligned_cols=148 Identities=26% Similarity=0.450 Sum_probs=123.6
Q ss_pred cceEEEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEe
Q 001330 462 ELVEEEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVK 541 (1099)
Q Consensus 462 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~ 541 (1099)
++..+.+||.+++++++..+.. ..+.+++.+.+. ...+.+|+.+|+|||.|||+||+||+ .|.|.|.+...
T Consensus 4 el~~e~~dl~~ll~e~i~~~~~--~~~~i~~~~~~~------~~~v~~d~~~l~~vl~NLi~NAik~~-~~~i~i~~~~~ 74 (161)
T d1bxda_ 4 EMPMEMADLNAVLGEVIAAESG--YEREIETALYPG------SIEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTE 74 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCS--SSCCEEEECCSS------CCCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEE
T ss_pred CCCcccCcHHHHHHHHHHHhhc--ccCcEEEEecCC------CeEEEECHHHHHHHHHHHHHHHHHhC-CCeEEEEEEEe
Confidence 6677899999999999987654 345666665432 24689999999999999999999998 56777776543
Q ss_pred ccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCC
Q 001330 542 KKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETAL 621 (1099)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~ 621 (1099)
.. .+.|+|.|+|+|||++++++||+||||.+.++
T Consensus 75 ~~---------------------------------------------~~~i~V~D~G~GI~~e~~~~iF~~F~r~~~~~- 108 (161)
T d1bxda_ 75 PN---------------------------------------------RAWFQVEDDGPGIAPEQRKHLFQPFVRGDSAR- 108 (161)
T ss_dssp TT---------------------------------------------EEEEEEEEESSCSCTTGGGCSSCCCCCCSCCC-
T ss_pred CC---------------------------------------------EEEEEEEEcCCCCCHHHHHHHhCCceECCCCC-
Confidence 22 57899999999999999999999999998764
Q ss_pred CCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEeccc
Q 001330 622 GHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLTA 667 (1099)
Q Consensus 622 ~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 667 (1099)
..+|+||||+|||+||+.|||+|+++++++ .|++|+|.+|++.
T Consensus 109 -~~~g~GLGL~ivk~iv~~hgG~i~v~s~~~--~Gt~f~v~lPl~~ 151 (161)
T d1bxda_ 109 -TISGTGLGLAIVQRIVDNHNGMLELGTSER--GGLSIRAWLPVPV 151 (161)
T ss_dssp -CCCCCSCCCCTTHHHHHHHTSEEEEEEETT--TEEEEEEEECCCS
T ss_pred -cCCCCCchHHHHHHHHHHCCCEEEEEEcCC--CcEEEEEEEEeec
Confidence 346999999999999999999999988763 5999999999875
No 5
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.93 E-value=4.1e-26 Score=229.44 Aligned_cols=154 Identities=19% Similarity=0.271 Sum_probs=101.1
Q ss_pred EEecHHHHHHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCCeEEEEEEEecccc
Q 001330 466 EEFNLAQLLEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEGHISVRAAVKKKSF 545 (1099)
Q Consensus 466 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~ 545 (1099)
...++.+++++++..+.... .+++++..+.++.. ..+.+|+.+|+|||.|||+||+||+..+.....+.......
T Consensus 2 ~~~~i~evie~v~~l~~~~~-~~~i~i~~~~~~~~----~~v~~D~~~l~qvl~NLl~NA~~~~~~~~~~~~~~~~~~~~ 76 (156)
T d1r62a_ 2 VTESIHKVAERVVTLVSMEL-PDNVRLIRDYDPSL----PELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQ 76 (156)
T ss_dssp EEECHHHHHHHHHHHHTTTC-CTTEEEEEECCTTC----CCEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEE
T ss_pred ccccHHHHHHHHHHHHHHHc-cCCCEEEEEcCCCC----CEEEECHHHHHHHHHHHHHHHHHhhhcCCCceeeeccccce
Confidence 45789999999999887665 46888888875432 36899999999999999999999997654333222111100
Q ss_pred chhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCC
Q 001330 546 KQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQE 625 (1099)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~ 625 (1099)
...........+.|.|.|+|+|||++.++++|+|||+.+ ..
T Consensus 77 ---------------------------------~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~pf~s~k------~~ 117 (156)
T d1r62a_ 77 ---------------------------------LTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGR------EG 117 (156)
T ss_dssp ---------------------------------EEETTEEEEEEEEEEEEEECTTC------------------------
T ss_pred ---------------------------------eeeccccCCceEEEEEecCCCCCCHHHHHhhcccceecC------CC
Confidence 000011122368899999999999999999999999754 25
Q ss_pred CccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 626 GLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 626 GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
|+||||+|||+||++|||+|+++|.+ | ||+|+|.+|+.
T Consensus 118 G~GLGL~i~~~iv~~hgG~i~v~s~~--g-Gt~f~i~LPl~ 155 (156)
T d1r62a_ 118 GTGLGLSIARNLIDQHSGKIEFTSWP--G-HTEFSVYLPIR 155 (156)
T ss_dssp --CHHHHHHHHHHHHTTCEEEEEEET--T-EEEEEEEEEEE
T ss_pred CCCchHHHHHHHHHHCCCEEEEEEeC--C-cEEEEEEEEec
Confidence 99999999999999999999998764 4 89999999974
No 6
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=99.93 E-value=1.8e-25 Score=231.94 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=115.1
Q ss_pred EecHHHHHHHHHHHHHHhHHhc-----CCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC--------e
Q 001330 467 EFNLAQLLEEVVDMYYHVGIKK-----GVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG--------H 533 (1099)
Q Consensus 467 ~~dL~~ll~~v~~~~~~~a~~k-----~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G--------~ 533 (1099)
.+|+.++++++++..+..+... .+++....... ...+..+.+|+.+|.|||.|||+||+||++++ .
T Consensus 10 ~~~l~~ii~da~e~~r~l~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~d~~~l~qvl~NLl~NA~~~~~~~~~~~~~~~~ 88 (190)
T d1jm6a2 10 NCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATN-ATQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPP 88 (190)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSS-TTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhccCcccceEEEeccC-CCCCEEEEECHHHHHHHHHHHHHHHHHHhhccCccccccce
Confidence 5689999999988776655432 33443221111 11345789999999999999999999998542 2
Q ss_pred EEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhcccc
Q 001330 534 ISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEF 613 (1099)
Q Consensus 534 I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F 613 (1099)
|.+.+.... ..+.|+|.|+|+|||++++++||+||
T Consensus 89 I~v~~~~~~---------------------------------------------~~~~i~V~D~G~GI~~~~~~~iF~~f 123 (190)
T d1jm6a2 89 IKIMVALGE---------------------------------------------EDLSIKMSDRGGGVPLRKIERLFSYM 123 (190)
T ss_dssp EEEEEEECS---------------------------------------------SEEEEEEEECSCCCCGGGTTGGGCTT
T ss_pred EEEEEEeCC---------------------------------------------eEEEEEEeccCCCCCHHHHHHHhCcc
Confidence 555443211 16889999999999999999999999
Q ss_pred ccccccCCCCC-----CCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 614 VQVKETALGHQ-----EGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 614 ~q~d~s~~~~~-----~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
||+++++.+.. +|+||||+|||+||+.|||+|+++|.+ |.||+|+|.+|..
T Consensus 124 ~~~~~~~~~~~~~~~~~G~GLGL~i~k~ive~hgG~I~v~s~~--g~Gt~f~i~lP~~ 179 (190)
T d1jm6a2 124 YSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSME--GFGTDAVIYLKAL 179 (190)
T ss_dssp CCCSCCC---------CCSSCHHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEESS
T ss_pred eecCCcCcCcccccccCCCCccHHHHHHHHHHCCCEEEEEecC--CCceEEEEEEeCC
Confidence 99987754332 499999999999999999999998876 4699999999863
No 7
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.93 E-value=9.7e-26 Score=234.81 Aligned_cols=149 Identities=17% Similarity=0.255 Sum_probs=115.3
Q ss_pred EEEecHHHHHHHHHHHHHHhHHhc---CCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCCC---------
Q 001330 465 EEEFNLAQLLEEVVDMYYHVGIKK---GVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSEG--------- 532 (1099)
Q Consensus 465 ~~~~dL~~ll~~v~~~~~~~a~~k---~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G--------- 532 (1099)
...+++.++++++++..+..+..+ .+++.++... ...+.+|+.+|+|||.|||+||+|||.++
T Consensus 7 ~t~~~l~~lv~~~~~~~~~~~~~~~~~~~~v~i~~~~-----~~~~~~d~~~l~qvl~NLl~NAi~~t~~~~~~~~~~~~ 81 (193)
T d1gkza2 7 CTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHV-----AARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVP 81 (193)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEST-----TCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcCCCcEEEeccCC-----CceeeecHHHHHHHHHHHHHHHHHhcccCceeeccccc
Confidence 457899999999999888776554 3445544322 23578999999999999999999998543
Q ss_pred eEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhccc
Q 001330 533 HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEE 612 (1099)
Q Consensus 533 ~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~ 612 (1099)
.|.+.+... ...+.|+|.|+|+|||++++++||+|
T Consensus 82 ~I~i~~~~~---------------------------------------------~~~v~i~V~D~G~GI~~e~~~~iF~~ 116 (193)
T d1gkza2 82 DVVITIANN---------------------------------------------DVDLIIRISDRGGGIAHKDLDRVMDY 116 (193)
T ss_dssp CEEEEEEEC---------------------------------------------SSEEEEEEECCSCCCCTTTTTTTTST
T ss_pred eEEEEEEcc---------------------------------------------CCEEEEEEecCCCCCCHHHHHHhcCC
Confidence 244443211 12688999999999999999999999
Q ss_pred cccccccCCCC--------------------CCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEec
Q 001330 613 FVQVKETALGH--------------------QEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLL 665 (1099)
Q Consensus 613 F~q~d~s~~~~--------------------~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l 665 (1099)
||++++++.+. ..|+||||+|||++|+.|||+|+|.|.+ |+||+|++.||.
T Consensus 117 f~tt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GlGL~i~k~ive~~gG~i~v~S~~--g~Gt~f~l~L~~ 187 (193)
T d1gkza2 117 HFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ--GIGTDVYLRLRH 187 (193)
T ss_dssp TCCCC-------------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEEC
T ss_pred ceecccccccccccccccccccccccccccccccCCcCHHHHHHHHHHCCCEEEEEecC--CCceEEEEEECC
Confidence 99988754321 2389999999999999999999998876 479999999975
No 8
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}
Probab=99.90 E-value=1.5e-23 Score=201.36 Aligned_cols=120 Identities=23% Similarity=0.332 Sum_probs=112.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
+||||||||+.+++.+..+|+..||+|..|.||++|++.+. ..+||+||+|++||+|||++++++||+.
T Consensus 1 KkILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~-----------~~~~dlil~D~~mp~~~G~~l~~~lr~~ 69 (121)
T d1zesa1 1 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-----------EPWPDLILLDWMLPGGSGIQFIKHLKRE 69 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHSS-----------SSCCSEEEECSSCTTSCHHHHHHHHHHS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECChHHHHHHHH-----------ccCCCEEEeecCCCCCCHHHHHHHHHhC
Confidence 58999999999999999999999999999999999999883 4589999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.. ..++|||++|++.+.++..+|+++|+++|+.||++.++|..+|++++++
T Consensus 70 ~~--~~~~pvi~lt~~~~~~~~~~~~~~G~~d~l~KP~~~~~L~~~v~~~lrR 120 (121)
T d1zesa1 70 SM--TRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 120 (121)
T ss_dssp TT--TTTSCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred cc--CCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcC
Confidence 43 3579999999999999999999999999999999999999999998875
No 9
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=99.90 E-value=2.1e-23 Score=199.74 Aligned_cols=116 Identities=27% Similarity=0.371 Sum_probs=109.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
+|||||||++.++..++.+|+..||+|..|.||.+|++.+.+ .+||+||+|+.||+|||+|++++||+.
T Consensus 2 krILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~-----------~~~dlillD~~mP~~~G~el~~~lr~~ 70 (119)
T d1peya_ 2 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK-----------ERPDLVLLDMKIPGMDGIEILKRMKVI 70 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------HCCSEEEEESCCTTCCHHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHh-----------CCCCEEEEeccCCCCCHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999864 379999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~ 1093 (1099)
. +++|||++|++.+.+...+|+++|+++||.||++.++|.++|++++
T Consensus 71 ~----~~~pvi~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~L 117 (119)
T d1peya_ 71 D----ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 117 (119)
T ss_dssp C----TTCEEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHS
T ss_pred C----CCCcEEEEecCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
Confidence 3 4689999999999999999999999999999999999999999875
No 10
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}
Probab=99.90 E-value=3.9e-23 Score=197.82 Aligned_cols=118 Identities=24% Similarity=0.337 Sum_probs=110.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.||||||||+.++..++..|+..||+|.+|.||++|++.+.+ ..||+||+|+.||+|||+|++++||+.
T Consensus 1 mrILvVDDd~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~-----------~~~dliilD~~mP~~~G~e~~~~i~~~ 69 (119)
T d2pl1a1 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE-----------HIPDIAIVDLGLPDEDGLSLIRRWRSN 69 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------SCCSEEEECSCCSSSCHHHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------cccceeehhccCCCchhHHHHHHHHhc
Confidence 389999999999999999999999999999999999999854 479999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
. +.+|||++|+..+.++..+|+++|+++||.||++.++|..+|++++++
T Consensus 70 ~----~~~pvi~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~lrR 118 (119)
T d2pl1a1 70 D----VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (119)
T ss_dssp T----CCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred C----cccceEeeeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 3 468999999999999999999999999999999999999999998864
No 11
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.89 E-value=1.9e-23 Score=204.37 Aligned_cols=126 Identities=22% Similarity=0.331 Sum_probs=113.3
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHH
Q 001330 959 PLNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRL 1038 (1099)
Q Consensus 959 ~~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~ 1038 (1099)
.+.|+|||||||++.++..++.+|+..|++|..|.||++|++.+. .+||+||+|++||+|||++++++
T Consensus 4 d~~g~rILvVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~------------~~~dlillD~~mP~~dG~el~~~ 71 (134)
T d1dcfa_ 4 NFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS------------HEHKVVFMDVCMPGVENYQIALR 71 (134)
T ss_dssp CCTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC------------TTCSEEEEECCSSTTTTTHHHHH
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHhh------------cCCCeEEEEeccCCCchHHHHHH
Confidence 457899999999999999999999999999999999999998762 36999999999999999999999
Q ss_pred Hhccccc-cCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1039 IRKEEEQ-YDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1039 IR~~~~~-~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
||+.... ....+|||++|++.+.++..+|+++|+++||.||++.++|.++++++++.+
T Consensus 72 ir~~~~~~~~~~~~ii~lT~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~l~~r 130 (134)
T d1dcfa_ 72 IHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (134)
T ss_dssp HHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred HHHhcccccCCCCeEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhhh
Confidence 9975332 234689999999999999999999999999999999999999999987643
No 12
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=99.89 E-value=4.8e-23 Score=196.58 Aligned_cols=116 Identities=28% Similarity=0.386 Sum_probs=109.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
+||||||||+.++..+..+|++.||+|..|.||++|++.+.+ .+||+||+|+.||+|||++++++||+.
T Consensus 1 KrILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~-----------~~~dlillD~~mp~~~G~~~~~~i~~~ 69 (117)
T d2a9pa1 1 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-----------EQPDIIILDLMLPEIDGLEVAKTIRKT 69 (117)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------HCCSEEEECSSCSSSCHHHHHHHHHTT
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------cCCCEEEeccccCCCCccHHHHHHHhC
Confidence 589999999999999999999999999999999999999964 379999999999999999999999963
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
+++|||++|+..+.+...+++++|++|||.||+++++|.++|+++++
T Consensus 70 -----~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~lr 116 (117)
T d2a9pa1 70 -----SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 116 (117)
T ss_dssp -----CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -----CCCCEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999999999999999999999999875
No 13
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}
Probab=99.89 E-value=5.6e-23 Score=197.91 Aligned_cols=120 Identities=20% Similarity=0.302 Sum_probs=111.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
+..+||||||++.+++.++.+|+..||.|.+|.+|++|++.+. ..+||+||+|++||+|||++++++||
T Consensus 2 ~~~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~-----------~~~~dlvi~D~~mp~~~G~e~~~~lr 70 (123)
T d1dbwa_ 2 QDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAP-----------DVRNGVLVTDLRMPDMSGVELLRNLG 70 (123)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGG-----------GCCSEEEEEECCSTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------hcCCcEEEEeccCccccchHHHHHHH
Confidence 3469999999999999999999999999999999999999874 35799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+. .+++|||++|++.+.+...+|+++|+++||.||++.++|.++|++.+++
T Consensus 71 ~~----~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~a~e~ 121 (123)
T d1dbwa_ 71 DL----KINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (123)
T ss_dssp HT----TCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred hc----CCCCeEEEEEeeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 74 3568999999999999999999999999999999999999999998765
No 14
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=99.89 E-value=2.4e-23 Score=200.47 Aligned_cols=120 Identities=30% Similarity=0.512 Sum_probs=106.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
+|||||||++.+++.++.+|+..||+|..|.||.+|++.+.+ .+||+||+|++||+|||++++++||+.
T Consensus 2 krILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-----------~~~dlil~D~~mp~~dG~el~~~ir~~ 70 (123)
T d1mb3a_ 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE-----------NKPDLILMDIQLPEISGLEVTKWLKED 70 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-----------HCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------CCCCEEEEEeccCCCcHHHHHHHHHhC
Confidence 689999999999999999999999999999999999999864 379999999999999999999999976
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.. ..++|||++|+....++..+++++|+++||.||++.++|.++|++++++
T Consensus 71 ~~--~~~iPii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~r 121 (123)
T d1mb3a_ 71 DD--LAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (123)
T ss_dssp TT--TTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred CC--cCCCCeEEEEEecCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhC
Confidence 43 3579999999999999999999999999999999999999999998764
No 15
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.89 E-value=1.8e-23 Score=200.68 Aligned_cols=118 Identities=27% Similarity=0.358 Sum_probs=111.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
||||||||+.+++.+..+|+..||+|.+|.||++|++.+.+ ..||+||+|++||+|||++++++||+..
T Consensus 3 kILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~-----------~~~dlvl~D~~mP~~~G~el~~~ir~~~ 71 (121)
T d1ys7a2 3 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE-----------NRPDAIVLDINMPVLDGVSVVTALRAMD 71 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------SCCSEEEEESSCSSSCHHHHHHHHHHTT
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------CCCCEEEEEeeccCcccHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999864 4799999999999999999999999753
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
+++|||++|++.+.+...+|+++|+++||+||++.++|.++|+++++++
T Consensus 72 ----~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~rr 120 (121)
T d1ys7a2 72 ----NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 120 (121)
T ss_dssp ----CCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ----CCCEEEEEEeeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 4699999999999999999999999999999999999999999998754
No 16
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.89 E-value=5e-23 Score=199.58 Aligned_cols=124 Identities=34% Similarity=0.537 Sum_probs=110.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCe-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
-|||||||++.+++.++.+|++.|+. |..|.||++|++.+++... ...+||+||||++||+|||++++++||+
T Consensus 2 irVLvVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~eAl~~l~~~~~------~~~~~dlillD~~mP~~dG~el~~~ir~ 75 (128)
T d2r25b1 2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTS------KGENYNMIFMDVQMPKVDGLLSTKMIRR 75 (128)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHH------HTCCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHHcCCeEEEEEcChHHHHHHHHhhhh------ccCCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 37999999999999999999999995 8899999999999865311 1357999999999999999999999996
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
... ..+|||++|++.+.++..+|+++|+++||.||++.++|.++|++++..
T Consensus 76 ~~~---~~~piI~lT~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 126 (128)
T d2r25b1 76 DLG---YTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 126 (128)
T ss_dssp HSC---CCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred ccC---CCCeEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 432 358999999999999999999999999999999999999999998754
No 17
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=99.89 E-value=7.8e-23 Score=196.32 Aligned_cols=117 Identities=26% Similarity=0.375 Sum_probs=109.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
+||||||||+.+++.++.+|++.||+|.+|.||++|++.+.+ .+||+||+|+.||+|||+++++++|..
T Consensus 3 krILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~-----------~~~dlillD~~mp~~~G~~~~~~~r~~ 71 (121)
T d1mvoa_ 3 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET-----------EKPDLIVLDVMLPKLDGIEVCKQLRQQ 71 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------HCCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------ccccEEEecccccCCCCchhhhhhhcc
Confidence 589999999999999999999999999999999999999964 379999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
. +.+|||++|+....+...+|+++|+++||.||+++++|..+|+++++
T Consensus 72 ~----~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~lr 119 (121)
T d1mvoa_ 72 K----LMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 119 (121)
T ss_dssp T----CCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred C----CCCEEEEEEeeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 3 45899999999999999999999999999999999999999999876
No 18
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=99.89 E-value=1.2e-22 Score=194.06 Aligned_cols=116 Identities=28% Similarity=0.455 Sum_probs=108.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
|+|||||||++.+++.++.+|++.||+|. .|.||++|++.+.+ .+||+||+|++||+|||+|++++||
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~~~-----------~~~dliilD~~mp~~~G~e~~~~ir 69 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE-----------LKPDIVTMDITMPEMNGIDAIKEIM 69 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-----------HCCSEEEEECSCGGGCHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHh-----------ccCCEEEEecCCCCCCHHHHHHHHH
Confidence 57999999999999999999999999976 68999999999964 3799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i 1092 (1099)
+.. +++|||++|++...+...+++++|+++||.||+++++|.++|+++
T Consensus 70 ~~~----~~~pvi~ls~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~l~~v 117 (118)
T d1u0sy_ 70 KID----PNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 117 (118)
T ss_dssp HHC----TTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred HhC----CCCcEEEEEccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 753 468999999999999999999999999999999999999999875
No 19
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.88 E-value=1.1e-22 Score=194.69 Aligned_cols=117 Identities=22% Similarity=0.276 Sum_probs=109.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
+|||||||+.+++.++..|++.||+|..|.||++|++.+.+ .+||+||+|++||+|||++++++||+.
T Consensus 2 nILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-----------~~~dliilD~~mP~~~G~e~~~~ir~~- 69 (119)
T d1zh2a1 2 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-----------RKPDLIILDLGLPDGDGIEFIRDLRQW- 69 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------HCCSEEEEESEETTEEHHHHHHHHHTT-
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-----------cCCCEEEeccccCCCCCchHHHHHHhc-
Confidence 69999999999999999999999999999999999999964 379999999999999999999999964
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
..+|||++|+..+.+...+|+++|+++||.||++.++|..+|++++++.
T Consensus 70 ----~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrr~ 118 (119)
T d1zh2a1 70 ----SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 118 (119)
T ss_dssp ----CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ----cCCcEEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Confidence 3479999999999999999999999999999999999999999998754
No 20
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=99.88 E-value=4.2e-23 Score=198.81 Aligned_cols=120 Identities=24% Similarity=0.324 Sum_probs=112.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
+.+|||||||+.++..++.+|++.||+|.+|.||.+|++.+. ..+||+||+|++||+|||++++++||+
T Consensus 3 k~~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~l~-----------~~~~dlii~D~~mp~~~G~el~~~l~~ 71 (123)
T d1krwa_ 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA-----------SKTPDVLLSDIRMPGMDGLALLKQIKQ 71 (123)
T ss_dssp CCEEEEESSSHHHHHHHHHHHHHTTCEEEEESSSHHHHHHHT-----------TCCCSEEEECCSSSSSTTHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-----------hCCCCEEEehhhcCCchHHHHHHHHHH
Confidence 357999999999999999999999999999999999999984 358999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
. .+.+|||++|+..+.+...+|+++|+++||.||++.++|..+|++++++.
T Consensus 72 ~----~~~~piI~~t~~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~l~~~ 122 (123)
T d1krwa_ 72 R----HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (123)
T ss_dssp H----SSSCCEEESCCCSCHHHHHHHHHHTEEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred h----CCCCeEEEEecCCCHHHHHHHHHcCCCeEEeCcCCHHHHHHHHHHHHHcc
Confidence 5 34699999999999999999999999999999999999999999998764
No 21
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.88 E-value=9.9e-23 Score=195.90 Aligned_cols=120 Identities=28% Similarity=0.463 Sum_probs=112.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.||||||||+.+++.++..|++.||+|.+|.||++|++.+.+ .+||+||+|+.||+|||+++++++|+.
T Consensus 2 irILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~-----------~~~dlillD~~mp~~~g~~~~~~lr~~ 70 (122)
T d1kgsa2 2 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN-----------EPFDVVILDIMLPVHDGWEILKSMRES 70 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------SCCSEEEEESCCSSSCHHHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcchHHHHHHHHh-----------hCccccccccccccchhHHHHHHHHhc
Confidence 589999999999999999999999999999999999999854 479999999999999999999999974
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
. +.+|||++|++.+.+...+|+++|+++||.||+++++|..+|++++++..
T Consensus 71 ~----~~~piI~lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~r~~ 121 (122)
T d1kgsa2 71 G----VNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 121 (122)
T ss_dssp T----CCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred C----CCCcEEEEcCCCCHHHHHHHHHcCCceeecCCCCHHHHHHHHHHHHHHhc
Confidence 3 46899999999999999999999999999999999999999999988653
No 22
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Probab=99.88 E-value=3e-22 Score=194.18 Aligned_cols=122 Identities=27% Similarity=0.417 Sum_probs=111.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCC-eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGA-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~-~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
+.|||||||++.+++.++.+|+..|+ .|..|.+|.+|++.+. ..+||+||+|++||+|||+|++++||
T Consensus 4 ~lriLvVDD~~~~r~~i~~~L~~~g~~~v~~a~~g~~a~~~~~-----------~~~~dlii~D~~mP~~dG~el~~~ir 72 (128)
T d1jbea_ 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-----------AGGYGFVISDWNMPNMDGLELLKTIR 72 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHT-----------TCCCCEEEEESCCSSSCHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHh-----------cCCCCEEEEecccccCCHHHHHHHHH
Confidence 35899999999999999999999997 5899999999998873 45899999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
+.+. ..++|||++|++...++..+|+++|+++||+||++.++|.++|+++++++
T Consensus 73 ~~~~--~~~~piI~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~l~~~l~r~ 126 (128)
T d1jbea_ 73 ADGA--MSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp C--C--CTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred hCcc--CCCCcEEEEECcCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHc
Confidence 8643 35799999999999999999999999999999999999999999998865
No 23
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.88 E-value=1.3e-22 Score=198.05 Aligned_cols=123 Identities=29% Similarity=0.503 Sum_probs=114.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+.+|||||||+.+++.+..+|+..||.|.+|.||.+|++.+.+ .+||+||+|++||+|||++++++||
T Consensus 7 ~~~~ILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~ea~~~~~~-----------~~~dlillD~~mP~~dG~el~~~ir 75 (133)
T d2ayxa1 7 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK-----------NHIDIVLSDVNMPNMDGYRLTQRIR 75 (133)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHH-----------SCCSEEEEEESSCSSCCHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEECcHHHHHHHHhc-----------cCceEEEEeccCCCCCHHHHHHHHH
Confidence 34699999999999999999999999999999999999999853 4799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhhh
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETMEK 1098 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~~ 1098 (1099)
+.. +++|||++|++...++..+|+++|+++||+||++.++|.++|+.+++..++
T Consensus 76 ~~~----~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~r~r~ 129 (133)
T d2ayxa1 76 QLG----LTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVRK 129 (133)
T ss_dssp HHH----CCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HhC----CCCCEEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 753 368999999999999999999999999999999999999999998887653
No 24
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.88 E-value=2.8e-22 Score=192.33 Aligned_cols=117 Identities=19% Similarity=0.286 Sum_probs=110.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.||||||||+.+++.+...|++.||+|..|.||++|++.+.+ .+||+||+|++||+++|+++++++|+.
T Consensus 3 p~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~-----------~~~dlii~D~~mp~~~G~~~~~~~r~~ 71 (121)
T d1xhfa1 3 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-----------YDINLVIMDINLPGKNGLLLARELREQ 71 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------SCCSEEEECSSCSSSCHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECChHHHHHHHHh-----------cCCCEEEeecccCCccCcHHHHHHHhc
Confidence 389999999999999999999999999999999999999854 479999999999999999999999974
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+++|||++|++.+.+...+++++|++|||.|||++++|..+|++++++
T Consensus 72 -----~~~pii~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~v~~~l~R 119 (121)
T d1xhfa1 72 -----ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 119 (121)
T ss_dssp -----CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred -----CCCcEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 358999999999999999999999999999999999999999998763
No 25
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}
Probab=99.88 E-value=2.6e-22 Score=197.61 Aligned_cols=128 Identities=23% Similarity=0.308 Sum_probs=112.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLG--AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G--~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
.+||||||||+.+++.++..|++.| ++|..|.||.+|++.+.+..+ .....+||+||+|++||+|||+|++++|
T Consensus 2 ~krILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~----~~~~~~pdlillD~~mP~~dG~el~~~i 77 (140)
T d1k68a_ 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGE----YANASRPDLILLDLNLPKKDGREVLAEI 77 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGG----GGSCCCCSEEEECSSCSSSCHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHhHH----hhccCCCCEEEEeeccccccChHHHHHH
Confidence 4799999999999999999999877 689999999999999853211 1123479999999999999999999999
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
|+.+. ..++|||++|+..+.++..+|+++|+++||+||++.++|.++|+++++.
T Consensus 78 r~~~~--~~~iPvI~ls~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~i~~~ 131 (140)
T d1k68a_ 78 KSDPT--LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEF 131 (140)
T ss_dssp HHSTT--GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred HhCcc--cCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 98643 2469999999999999999999999999999999999999999998764
No 26
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=99.88 E-value=2.6e-22 Score=197.66 Aligned_cols=119 Identities=23% Similarity=0.321 Sum_probs=110.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
+|||||||+.++..+..+|+..||.|..+.||.+|++.+. ...||+||+|+.||+|||++++++||+.
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-----------~~~~dlil~D~~mP~~~G~el~~~lr~~- 69 (140)
T d1qkka_ 2 SVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLS-----------ADFAGIVISDIRMPGMDGLALFRKILAL- 69 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCC-----------TTCCSEEEEESCCSSSCHHHHHHHHHHH-
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEeCChHHHHHHHh-----------ccCcchHHHhhccCCCCHHHHHHHHHHh-
Confidence 7999999999999999999999999999999999999883 4589999999999999999999999974
Q ss_pred cccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1044 EQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
.+++|||++|++.+.+...+|+++||+|||.||++.++|..++++.++...
T Consensus 70 ---~~~~pvI~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~~ 120 (140)
T d1qkka_ 70 ---DPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 120 (140)
T ss_dssp ---CTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred ---CCCCcEEEEECCCCHHHHHHHHHcCCCEeecCCCCHHHHHHHHHHHHHHHH
Confidence 356999999999999999999999999999999999999999999876553
No 27
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}
Probab=99.88 E-value=1.2e-22 Score=197.33 Aligned_cols=122 Identities=21% Similarity=0.356 Sum_probs=112.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCe-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
+.|||||||++.++..++.+|++.||. |..|.||++|++.+.+ .+||+||+|++||+|||++++++||
T Consensus 6 ~~kILiVDD~~~~~~~l~~~L~~~g~~~v~~a~~~~~al~~l~~-----------~~~dlii~D~~mP~~~G~el~~~lr 74 (129)
T d1p6qa_ 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ-----------NPHHLVISDFNMPKMDGLGLLQAVR 74 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHT-----------SCCSEEEECSSSCSSCHHHHHHHHT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHh-----------CCCCeEEeeeecCCCChHHHHHHHH
Confidence 358999999999999999999999995 7889999999999853 4799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
+.+. ..++|||++|++.+.+...+|+++|+++|+.||++.++|.++|++++..+
T Consensus 75 ~~~~--~~~~pii~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~i~~vl~~~ 128 (129)
T d1p6qa_ 75 ANPA--TKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGAL 128 (129)
T ss_dssp TCTT--STTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHCC
T ss_pred hCcc--cCCCeEEEEEecCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 7643 35799999999999999999999999999999999999999999998754
No 28
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.87 E-value=5.5e-22 Score=190.05 Aligned_cols=119 Identities=23% Similarity=0.286 Sum_probs=111.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.||||||||+.+++.+..+|++.||+|..|.+|++|++.+.+ ..||+|++|+.||+|||+++++.+|..
T Consensus 2 ~rILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~-----------~~~dliilD~~mp~~~g~~~~~~~~~~ 70 (120)
T d1zgza1 2 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN-----------QSVDLILLDINLPDENGLMLTRALRER 70 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------SCCSEEEEESCCSSSCHHHHHHHHHTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------cCCCEEeeehhhccchhHHHHHHHhcc
Confidence 489999999999999999999999999999999999999854 479999999999999999999999863
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
..+|||++|++.+.+...+|+++|++|||.||++.++|..+|++++++++
T Consensus 71 -----~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrR~e 120 (120)
T d1zgza1 71 -----STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 120 (120)
T ss_dssp -----CCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHT
T ss_pred -----CCCeEEEEEccCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcccC
Confidence 35899999999999999999999999999999999999999999998764
No 29
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=99.87 E-value=7.1e-22 Score=194.28 Aligned_cols=121 Identities=25% Similarity=0.353 Sum_probs=112.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.|||||||++.+++.++.+|++.||+|..|.||++|++.+.+ ..||+|++|+.||+++|+++++.+|..
T Consensus 2 arILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~-----------~~~dlil~D~~~p~~~G~~~~~~ir~~ 70 (139)
T d1w25a1 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR-----------DLPDIILLDVMMPGMDGFTVCRKLKDD 70 (139)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------HCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEccchhhhhhhhc-----------ccceeeeeeccccCCCchHHHHHhhhc
Confidence 489999999999999999999999999999999999999864 379999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
.. ..++|||++|++.+.+...+|+++|++|||.||++.++|..+|+++++..
T Consensus 71 ~~--~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lr~~ 122 (139)
T d1w25a1 71 PT--TRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (139)
T ss_dssp TT--TTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cc--ccCCCEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 43 35799999999999999999999999999999999999999998887653
No 30
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=99.87 E-value=4.8e-22 Score=194.97 Aligned_cols=120 Identities=24% Similarity=0.370 Sum_probs=111.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.||||||||+.++..++.+|+..||+|..|.||++|++.+.+ .+||+||+|+.||+|+|++++++||+.
T Consensus 1 mkILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eAl~~l~~-----------~~~dlvilD~~mp~~~G~e~~~~lr~~ 69 (137)
T d1ny5a1 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE-----------KHFNVVLLDLLLPDVNGLEILKWIKER 69 (137)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH-----------SCCSEEEEESBCSSSBHHHHHHHHHHH
T ss_pred CEEEEEecCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHhhc-----------cccccchHHHhhhhhhHHHHHHHHHHh
Confidence 379999999999999999999999999999999999999854 479999999999999999999999974
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
.+++|||++|++.+.+...+|+++|++|||.||++.++|..+++++++...
T Consensus 70 ----~~~~piI~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~ 120 (137)
T d1ny5a1 70 ----SPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK 120 (137)
T ss_dssp ----CTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999998876543
No 31
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}
Probab=99.86 E-value=9.8e-22 Score=195.58 Aligned_cols=131 Identities=22% Similarity=0.297 Sum_probs=112.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCC--eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGA--KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~--~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+||||||++.++..++.+|++.|+ +|..|.||++|++.+.+.-.. ........||+||+|++||+|||+|++++||
T Consensus 7 ~~ILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~-~~~~~~~~pdlillD~~mP~~~G~el~~~ir 85 (149)
T d1k66a_ 7 QPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSY-CNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp SCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSS-SCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCCceEEEEECChHHHHHHHHhhccc-cccccccCCCeEEccccccCCCcHHHHHHHH
Confidence 4799999999999999999999997 789999999999998631000 0001134699999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
+.+. ..++|||++|+..+.++..+|+++|+++||.||++.++|.++|+++++..
T Consensus 86 ~~~~--~~~ipiI~lT~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 139 (149)
T d1k66a_ 86 QDEV--LKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp TSTT--GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred hccc--cCCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 7653 24799999999999999999999999999999999999999999988753
No 32
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}
Probab=99.86 E-value=1.8e-21 Score=192.57 Aligned_cols=127 Identities=20% Similarity=0.271 Sum_probs=111.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCC--eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGA--KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~--~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
++||||||++.+++.++.+|++.|+ +|.+|.||.+|++.+++.. .......||+||+|++||+|||+|++++||
T Consensus 4 k~ILiVdD~~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~----~~~~~~~pdlIllD~~mP~~~G~el~~~ir 79 (144)
T d1i3ca_ 4 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQG----EYENSPRPNLILLDLNLPKKDGREVLAEIK 79 (144)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCG----GGTTCCCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHhch----hhhccCCCCEEEEECccccccchHHHHHHH
Confidence 5899999999999999999998774 7889999999999985311 011234699999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+.+. ..++|||++|+..+.++..+|+++|+++||.||++.++|.++|+++.+.
T Consensus 80 ~~~~--~~~iPvi~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~l~~~ 132 (144)
T d1i3ca_ 80 QNPD--LKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESF 132 (144)
T ss_dssp HCTT--TTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hCcc--cCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 8643 3579999999999999999999999999999999999999999988764
No 33
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.86 E-value=7.3e-22 Score=204.66 Aligned_cols=118 Identities=25% Similarity=0.363 Sum_probs=109.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEE-EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFE-VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRK 1041 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~ 1041 (1099)
.|||||||++.++..++.+|++.||+++ .|.||.+|++.+.+ ..||+||||++||+|||+|++++||+
T Consensus 4 ~kILiVDD~~~~r~~l~~~L~~~g~~vv~~a~~g~eal~~~~~-----------~~pDlvllDi~mP~~dG~e~~~~ir~ 72 (190)
T d1s8na_ 4 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL-----------HKPDLVIMDVKMPRRDGIDAASEIAS 72 (190)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-----------HCCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhc-----------CCCCEEEEeccccCcchHHHHHHHHh
Confidence 5899999999999999999999999875 79999999999864 37999999999999999999999997
Q ss_pred cccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1042 EEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
. ..+|||++|++++.+...+|+++||+|||.||+++++|..+|+..+...
T Consensus 73 ~-----~~~pIi~lTa~~~~~~~~~al~~Ga~~yl~KP~~~~~L~~~i~~~~~~~ 122 (190)
T d1s8na_ 73 K-----RIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 122 (190)
T ss_dssp T-----TCSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred c-----CCCCEEEEeCCCCHHHHHHHHHcCCCEeccCCCCHHHHHHHHHHHHHhh
Confidence 4 2489999999999999999999999999999999999999998877554
No 34
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=99.86 E-value=9.7e-22 Score=190.50 Aligned_cols=120 Identities=24% Similarity=0.306 Sum_probs=110.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.+|||||||+.+++.+..+|+..||.|.++.+|++|++.+. ...||+||+|+.||+|||+++++++|+.
T Consensus 3 P~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~-----------~~~~dliilD~~mp~~~G~~~~~~i~~~ 71 (128)
T d1yioa2 3 PTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRR-----------PEQHGCLVLDMRMPGMSGIELQEQLTAI 71 (128)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCC-----------TTSCEEEEEESCCSSSCHHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccccccHHHHHHHHH-----------hcCCCEeehhhhcccchhHHHHHHHHhh
Confidence 38999999999999999999999999999999999999873 4579999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
. +.+|||++|+.++.+...+|+++|+++||.||++.++|..+|+++++...
T Consensus 72 ~----~~~~ii~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~ 122 (128)
T d1yioa2 72 S----DGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNA 122 (128)
T ss_dssp T----CCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred C----CCCeEEEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 3 46899999999999999999999999999999999999999999887543
No 35
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.86 E-value=1.6e-21 Score=187.65 Aligned_cols=118 Identities=19% Similarity=0.336 Sum_probs=105.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcC-Ce-EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLG-AK-FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G-~~-v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.||||||||+.+++.++.+|+..| +. |..|.||++|++.+.+ ..||+||+|++||+|||+|++++||
T Consensus 2 irILivDD~~~~~~~l~~~L~~~~~~~~v~~a~~g~~al~~~~~-----------~~~dlillD~~mP~~dG~e~~~~ir 70 (123)
T d1dz3a_ 2 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE-----------KRPDILLLDIIMPHLDGLAVLERIR 70 (123)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH-----------HCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh-----------cCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 489999999999999999999876 34 5579999999999864 3799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
+..+ ..+|||++|++...+...+|+++|+++||.||++.++|.++|+++++
T Consensus 71 ~~~~---~~~~ii~~t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~v~~ 121 (123)
T d1dz3a_ 71 AGFE---HQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYG 121 (123)
T ss_dssp HHCS---SCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHH
T ss_pred hcCC---CCCeEEEEECcCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 7432 23579999999999999999999999999999999999999998875
No 36
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}
Probab=99.85 E-value=1.4e-21 Score=187.17 Aligned_cols=117 Identities=28% Similarity=0.380 Sum_probs=106.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.|||||||++.+++.+...|++.|+ +.++.+|.+|++. ..+||+||+|+.||+|||+++++++|+.
T Consensus 3 ~kILiVDDd~~~~~~l~~~L~~~g~-v~~~~~~~~al~~-------------~~~~dlillD~~mP~~~G~~~~~~lr~~ 68 (120)
T d1p2fa2 3 WKIAVVDDDKNILKKVSEKLQQLGR-VKTFLTGEDFLND-------------EEAFHVVVLDVMLPDYSGYEICRMIKET 68 (120)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTEE-EEEESSHHHHHHC-------------CSCCSEEEEESBCSSSBHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHhCCE-EEEECCHHHHHhc-------------CCCCCEEEEeCcccccchhHHHHHHhhc
Confidence 4899999999999999999999985 8899999998642 2469999999999999999999999975
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
. +.+|||++|+..+.+...+|+++|++|||.||+++++|..+|+++++..+
T Consensus 69 ~----~~~~ii~it~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~r~r 119 (120)
T d1p2fa2 69 R----PETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREK 119 (120)
T ss_dssp C----TTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCC
T ss_pred C----CCCcEEEEecCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHcc
Confidence 3 46899999999999999999999999999999999999999999987654
No 37
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=99.85 E-value=3.7e-21 Score=192.10 Aligned_cols=122 Identities=20% Similarity=0.300 Sum_probs=107.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 961 NGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 961 ~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+.|||||||++.+++.+...|+..||.|. .++.++++.+.. .+||+||+|++||+|||++++++||
T Consensus 12 ~~~rILiVDD~~~~~~~l~~~L~~~g~~v~--~~~~~~~~~~~~-----------~~~DlillD~~mP~~dG~el~~~ir 78 (153)
T d1w25a2 12 LGGRVLIVDDNERQAQRVAAELGVEHRPVI--ESDPEKAKISAG-----------GPVDLVIVNAAAKNFDGLRFTAALR 78 (153)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTTTSEEEE--ECCHHHHHHHHH-----------SSCSEEEEETTCSSSCHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEE--EccHHHHHHHhc-----------CCCCEEEEECccccccchHHHHHHH
Confidence 467999999999999999999999998874 456677666532 4799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
+.+. ..++|||++|++.+.+...+|+++|++|||.|||++++|..+|++.++...
T Consensus 79 ~~~~--~~~iPiI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~~ 133 (153)
T d1w25a2 79 SEER--TRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKR 133 (153)
T ss_dssp TSGG--GTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred hccc--cccceeEEeecCCCHHHHHHHHhcCcceEEECCCCHHHHHHHHHHHHHHHH
Confidence 7653 357999999999999999999999999999999999999999998877653
No 38
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}
Probab=99.83 E-value=2.7e-20 Score=182.61 Aligned_cols=117 Identities=19% Similarity=0.304 Sum_probs=107.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLG--AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G--~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.|||||||++.+++.++.+|+..| +.|..|.||++|++.+.+ .+||+||+|++||+|||++++++||
T Consensus 3 i~VLiVDD~~~~r~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~-----------~~~DlvllD~~mP~~~G~el~~~ir 71 (138)
T d1a04a2 3 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-----------LDPDLILLDLNMPGMNGLETLDKLR 71 (138)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH-----------HCCSEEEEETTSTTSCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh-----------cCCCEEEEecCCCCCCHHHHHHHHH
Confidence 489999999999999999999877 456789999999999864 3799999999999999999999999
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
+. .+.+|||++|+..+.+...+|+++|+++||.||++.++|.++|++++.
T Consensus 72 ~~----~~~~~vivlt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~v~~ 121 (138)
T d1a04a2 72 EK----SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAA 121 (138)
T ss_dssp HS----CCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred hh----CCCCCEEEEEEECCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHC
Confidence 64 346899999999999999999999999999999999999999999875
No 39
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}
Probab=99.80 E-value=4.3e-20 Score=176.04 Aligned_cols=113 Identities=16% Similarity=0.246 Sum_probs=97.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhcc
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~ 1042 (1099)
.||||||||+..++.+..+|++.||+|.++.||.+|++.+.+ ..+||+||+|+.||+|||++++++||+.
T Consensus 3 ~rILvVdDd~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~----------~~~~dliilD~~lp~~~G~el~~~ir~~ 72 (118)
T d2b4aa1 3 FRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQ----------LSTCDLLIVSDQLVDLSIFSLLDIVKEQ 72 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGG----------GGSCSEEEEETTCTTSCHHHHHHHHTTS
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCCeEEECCHHHHHHHHHh----------cCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 589999999999999999999999999999999999987632 2369999999999999999999999964
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSI 1092 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i 1092 (1099)
.+++|||++|+.... ..++...|+ |||+|||++++|..+|+..
T Consensus 73 ----~~~~pii~lt~~~~~--~~~~~~~~~-dyl~KP~~~~eL~~~i~~~ 115 (118)
T d2b4aa1 73 ----TKQPSVLILTTGRHE--LIESSEHNL-SYLQKPFAISELRAAIDYH 115 (118)
T ss_dssp ----SSCCEEEEEESCC----CCCCSSSCE-EEEESSCCHHHHHHHHHHT
T ss_pred ----CCCCcEEEEECCccH--HHHHhhcCC-CEEECCCCHHHHHHHHHHH
Confidence 346899999997654 335666676 8999999999999998763
No 40
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=99.76 E-value=2e-18 Score=169.49 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=87.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLG--AKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G--~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
+.|||||||++.+++.++.+|+..| +.|.+|.||.+|++.+.+ ..||+||+|++||+|||++++++|
T Consensus 3 kirVLiVDD~~~~r~~l~~~L~~~g~~~~v~~a~~g~~al~~~~~-----------~~pDlvllDi~MP~~dG~e~~~~i 71 (140)
T d1a2oa1 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK-----------FNPDVLTLDVEMPRMDGLDFLEKL 71 (140)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH-----------HCCSEEEEECCCSSSCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHh-----------cCCCEEEEcCCCCCCCHHHHHHHH
Confidence 4589999999999999999999998 456789999999999864 379999999999999999999999
Q ss_pred hccccccCCCccEEEEeccC-CHHHHHHHHHcCCCEEEeCCCC
Q 001330 1040 RKEEEQYDVHIPIIALTAHA-MAGVASKIVDAGMDFHLTKPLQ 1081 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~-~~~~~~~~l~aG~ddyL~KPi~ 1081 (1099)
|+..+ ..+|+++|... ..+...+|+++|+++||.||+.
T Consensus 72 r~~~~----~~~i~i~~~~~~~~~~~~~al~~Ga~~yl~KP~~ 110 (140)
T d1a2oa1 72 MRLRP----MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQL 110 (140)
T ss_dssp HHSSC----CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred HHhCC----CCcEEEEEecCCChHHHHHHHHcCCCEEEECCCC
Confidence 97532 33455555443 2356778999999999999974
No 41
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}
Probab=99.74 E-value=1.6e-18 Score=174.84 Aligned_cols=164 Identities=16% Similarity=0.087 Sum_probs=94.1
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEecHHHH
Q 001330 394 KTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKMELVEEEFNLAQL 473 (1099)
Q Consensus 394 k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~~l~~~~~dL~~l 473 (1099)
+.++++++|||+||||++|.|++++.. .++..++++.+.....+. ++.-.-.. ..+
T Consensus 9 ~~~~l~~~~Hdl~npL~~I~g~l~L~~-----~~~~~~~i~~i~~~~~~~----------~~~~~~~~---------~~~ 64 (179)
T d1ixma_ 9 LIHLLGHSRHDWMNKLQLIKGNLSLQK-----YDRVFEMIEEMVIDAKHE----------SKLSNLKT---------PHL 64 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHH----------HHHHTTTC---------HHH
T ss_pred HHHHHHHhhHhhcCHHHHHHHHHHccc-----cccchhHHHHHHHhhhcc----------cccccccc---------ccc
Confidence 446899999999999999999998632 123344444444333332 22211110 000
Q ss_pred HHHHHHHHHHhHHhcCCEEEEccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC-C--eEEEEEEEeccccchhhh
Q 001330 474 LEEVVDMYYHVGIKKGVDVVLDPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE-G--HISVRAAVKKKSFKQDII 550 (1099)
Q Consensus 474 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G--~I~v~~~~~~~~~~~~~~ 550 (1099)
........+....+.+....+.. ...+.+|+..+.||+.|||+||++|+.. | ...|++.....
T Consensus 65 ---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~qvl~Nll~NAi~~~~~~~~~~~~I~i~~~~~------- 130 (179)
T d1ixma_ 65 ---AFDFLTFNWKTHYMTLEYEVLGE----IKDLSAYDQKLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHP------- 130 (179)
T ss_dssp ---HHHHHHGGGSCCSSEEEEEEESS----CCCCTTTHHHHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCS-------
T ss_pred ---cccccchhhhccccccccccccc----cchhhhhhhhhHHHHHHHHHHHHHHhhhccccchhhhhhhccc-------
Confidence 11122233445566666554332 2346789999999999999999999854 2 23444332211
Q ss_pred hccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhcccccccccc----CCCCCCC
Q 001330 551 ASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKET----ALGHQEG 626 (1099)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s----~~~~~~G 626 (1099)
...+.|+|.|+|+||||+.+++||++|||.... -+.+..|
T Consensus 131 ------------------------------------~~~~~i~v~D~G~gi~~e~l~~if~~~y~~~~~~~~~~~~~~~~ 174 (179)
T d1ixma_ 131 ------------------------------------DRQLILYLDFHGAFADPSAFDDIRQNGYEDVDIMRFEITSHECL 174 (179)
T ss_dssp ------------------------------------SSSCEEEEEEESCBSCGGGCC-----------EEEEEECSSEEE
T ss_pred ------------------------------------ccEEEEEEEeCCCCcCHHHHHHHHHhccccccceEEEeecCcee
Confidence 125789999999999999999999999997542 1233457
Q ss_pred ccccH
Q 001330 627 LGLGL 631 (1099)
Q Consensus 627 tGLGL 631 (1099)
+||||
T Consensus 175 ~~~~~ 179 (179)
T d1ixma_ 175 IEIGL 179 (179)
T ss_dssp EEEEC
T ss_pred EeeCC
Confidence 77776
No 42
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.74 E-value=2.3e-18 Score=177.64 Aligned_cols=116 Identities=22% Similarity=0.261 Sum_probs=104.0
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 960 LNGKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 960 ~~~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
+++.+||||||++.+++.+...|+..||+|..|.++.+|++ .+||+||+|++||+|+|..+.+..
T Consensus 9 l~~~~iLvvdd~~~~~~~l~~~L~~~G~~v~~~~~~~~al~---------------~~~Dlvl~D~~mp~~~~~~~~~~~ 73 (189)
T d1qo0d_ 9 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAFD---------------VPVDVVFTSIFQNRHHDEIAALLA 73 (189)
T ss_dssp GGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSCS---------------SCCSEEEEECCSSTHHHHHHHHHH
T ss_pred ccCCEEEEEeCCHHHHHHHHHHHHHcCCcceecCCHHHhcc---------------CCCCEEEEcCCCCCcHHHHHHHHH
Confidence 45679999999999999999999999999999999999852 379999999999999888777655
Q ss_pred hccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 001330 1040 RKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1040 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~ 1095 (1099)
+. .+++|||++|++.+.+...+|+++|+++||.||++.++|..+|+.++..
T Consensus 74 ~~-----~p~~pvI~lta~~~~~~~~~al~~Ga~~yL~KP~~~~~L~~~i~~~~~~ 124 (189)
T d1qo0d_ 74 AG-----TPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRI 124 (189)
T ss_dssp HS-----CTTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHH
T ss_pred Hc-----CCCCCEEEEeccchHHHHHHHHHcCCcEEEEecchhhHHHHHHhhcccc
Confidence 53 3568999999999999999999999999999999999999999876554
No 43
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=99.58 E-value=3.3e-15 Score=157.45 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=86.4
Q ss_pred ccHHHHHHHHHHHHHhHhhccCCC----eEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccC
Q 001330 509 GDRVKLKQILCNLVSNSMKFTSEG----HISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERN 584 (1099)
Q Consensus 509 gD~~rL~QIL~NLL~NAiKfT~~G----~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (1099)
+....|.|+|.|||+||++|+..+ .+.+.+.....
T Consensus 18 ~~~~~L~~~l~eLi~Naida~~~~~~~~~i~i~i~~~~~----------------------------------------- 56 (219)
T d2hkja3 18 NPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD----------------------------------------- 56 (219)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEET-----------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCcceEEEEEEEecC-----------------------------------------
Confidence 355569999999999999998764 33343322211
Q ss_pred CCceeEEEEEEeCCCCCCcccHhhhccccccccccCCCC-CCCccccHHHHHHHHHhcCCE-EEEEecCCCceeEEEEEE
Q 001330 585 PNLLQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGH-QEGLGLGLGIVQSMVHLMKGE-IAIADKEPGERGVCFRFN 662 (1099)
Q Consensus 585 ~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~-~~GtGLGLaIvk~lVe~~gG~-I~v~s~~~gg~Gt~f~~~ 662 (1099)
+...+.|.|.|+|+||++++++++|++|++.+....+. .||.||||++|+.++++|+|+ |.|.++..++ ++.+.+.
T Consensus 57 -~~~~~~i~V~DnG~Gi~~~~~~~~f~~~~~s~~~~~~~~~G~~GlGl~~~~~~s~~~~g~~i~V~S~~~~~-~~~~~~~ 134 (219)
T d2hkja3 57 -ARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNS-KRIYTFK 134 (219)
T ss_dssp -TTTEEEEEEEECSCCCCGGGHHHHHHCCCSSCCCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTC-SEEEEEE
T ss_pred -CCCEEEEEEEcCCCCCCHHHHHhhccceEeccccccccccCccCHHHHHHHHHHHHcCCcEEEEEEEecCC-CcEEEEe
Confidence 11257899999999999999999999999998765443 467899999999999999997 9998886543 4444554
Q ss_pred Eec
Q 001330 663 VLL 665 (1099)
Q Consensus 663 l~l 665 (1099)
++.
T Consensus 135 ~~~ 137 (219)
T d2hkja3 135 LKI 137 (219)
T ss_dssp EEE
T ss_pred ecc
Confidence 443
No 44
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=99.51 E-value=2.5e-14 Score=128.60 Aligned_cols=77 Identities=29% Similarity=0.326 Sum_probs=66.8
Q ss_pred HHHHHHHHhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 001330 385 EQAERKSMNKTFALAKASHDVRASLAAIIGLVELCHEDA--NPGTDLAENLGLIRTCSKDLLGILNSVMEMSKIEAGKM 461 (1099)
Q Consensus 385 ~~ae~~~~~k~~fla~~SHELRTPLt~I~g~~ell~~~~--~~~~~~~~~l~~I~~~~~~L~~LIndlLdlskie~g~~ 461 (1099)
+++++.++.|..|++++||||||||++|.|+++++.+.. ...++.+++++.|..++.+|..+|+++|+++|+|+|++
T Consensus 11 e~l~~~~~~k~~f~~~vsHeLRtPL~~I~~~~~~L~~~~~~~~~~~~~~~l~~i~~~~~rl~~li~~lLd~srle~g~l 89 (89)
T d2c2aa1 11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSL 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 445666778899999999999999999999999987542 23455789999999999999999999999999999975
No 45
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=99.34 E-value=2.6e-12 Score=130.24 Aligned_cols=71 Identities=21% Similarity=0.376 Sum_probs=60.7
Q ss_pred EEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEEEecc
Q 001330 593 EVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFNVLLT 666 (1099)
Q Consensus 593 ~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 666 (1099)
.+.|.|.|++++..+++|++||+.+... +.++|+||||+|||+||++|||+|+|+|.+ |+||||+|.+|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~G~GLGLai~k~ive~hgG~I~v~S~~--g~GT~f~i~lPlt 189 (189)
T d1i58a_ 119 DESKAATLSDQEILNFLFVPGFSTKEKV-SEVSGRGVGMDVVKNVVESLNGSISIESEK--DKGTKVTIRLPLT 189 (189)
T ss_dssp CHHHHTTCCHHHHHGGGGSTTCSHHHHH-HGGGTCCCHHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEECC
T ss_pred eecccccchhhhhhhhhhcccccccccc-ccCCcCccCHHHHHHHHHHCCCEEEEEecC--CCCEEEEEEEeCC
Confidence 4677788888999999999999876543 345699999999999999999999998775 4799999999973
No 46
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.28 E-value=6.9e-12 Score=122.02 Aligned_cols=94 Identities=19% Similarity=0.420 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhHhhcc----CCCeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCc
Q 001330 512 VKLKQILCNLVSNSMKFT----SEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNL 587 (1099)
Q Consensus 512 ~rL~QIL~NLL~NAiKfT----~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (1099)
..+++++.+++.||++|+ +.|.|.+.+.....
T Consensus 38 ~di~~av~E~v~Nai~ha~~~~~~~~I~i~~~~~~~-------------------------------------------- 73 (139)
T d1th8a_ 38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDG-------------------------------------------- 73 (139)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETT--------------------------------------------
T ss_pred HHHHHHHHHhhhhhhheecCCCCCcEEEEEEEEecC--------------------------------------------
Confidence 458899999999999996 34567777654322
Q ss_pred eeEEEEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCCceeEEEEEE
Q 001330 588 LQFEFEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGERGVCFRFN 662 (1099)
Q Consensus 588 ~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg~Gt~f~~~ 662 (1099)
.+.|+|.|+|+|||+ .+++|+||++.+.. ..|+||||+|+++++ |+|++.+.+ +.|++|+++
T Consensus 74 -~l~i~i~D~G~gi~~--~~~~~~~~~~~~~~----~~~~GlGL~iv~~l~----d~i~i~s~~--~~Gt~v~i~ 135 (139)
T d1th8a_ 74 -VVHLTVRDEGVGIPD--IEEARQPLFTTKPE----LERSGMGFTIMENFM----DEVIVESEV--NKGTTVYLK 135 (139)
T ss_dssp -EEEEEEEECSSCCSC--HHHHTCCC-----------CCCSCHHHHHHHHS----SEEEEEEET--TTEEEEEEE
T ss_pred -EEEEEEccccccccc--ccccccccceeccc----CCCchHHHHHHHHhC----CEEEEEEcC--CCcEEEEEE
Confidence 688999999999974 67899999976542 247799999988755 799998765 368998875
No 47
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.22 E-value=2.7e-11 Score=114.75 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=69.9
Q ss_pred EEecHHHHHHHHHHHHHHhHHhcC-----CEEEE-ccCCCCCcccceEEccHHHHHHHHHHHHHhHhhccCC--------
Q 001330 466 EEFNLAQLLEEVVDMYYHVGIKKG-----VDVVL-DPCDGSVLGSCHVRGDRVKLKQILCNLVSNSMKFTSE-------- 531 (1099)
Q Consensus 466 ~~~dL~~ll~~v~~~~~~~a~~k~-----i~l~~-~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-------- 531 (1099)
..+++.++++++++..+..+..+. +.... ....+ ..+..+.+|+.+|.||+.|||+||+||+.+
T Consensus 13 ~~~~l~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~d~~~l~qvl~NLl~NAi~~~~~~~~~~~~~ 90 (125)
T d1y8oa2 13 PTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAP--DKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDRKEG 90 (125)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTST--TSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhhheeeeCC--CCCeEEeeCHHHHHHHHHHHHHHHHHhhhccccccCCC
Confidence 567899999999888876665432 11111 11111 124579999999999999999999999742
Q ss_pred -CeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEEEEeCCCCCCcccHhhhc
Q 001330 532 -GHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFEVDDTGKGIPKDKQNSIF 610 (1099)
Q Consensus 532 -G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IF 610 (1099)
+.|.+..... ...+.|+|+|+|+|||++++++||
T Consensus 91 ~~~I~i~~~~~---------------------------------------------~~~v~i~V~D~G~GI~~e~~~~IF 125 (125)
T d1y8oa2 91 YPAVKTLVTLG---------------------------------------------KEDLSIKISDLGGGVPLRKIDRLF 125 (125)
T ss_dssp CCCEEEEEEEC---------------------------------------------SSEEEEEEEECSCCCCHHHHGGGG
T ss_pred ceeEEEEeecC---------------------------------------------CCEEEEEEEEeCCCcCHHHHcccC
Confidence 2344443221 126899999999999999999999
No 48
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]}
Probab=99.08 E-value=3.8e-11 Score=101.28 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=51.2
Q ss_pred HhHHHHHHHhHHHhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001330 392 MNKTFALAKASHDVRASLAAIIGLVELCHEDANPGTDLAENLGLIRTCSKDLLGILNSVMEMSK 455 (1099)
Q Consensus 392 ~~k~~fla~~SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~I~~~~~~L~~LIndlLdlsk 455 (1099)
..+..|++++||||||||++|.|+++++.+ +..++++.|.+++++|..||+++|+++|
T Consensus 10 ~~~~~f~~~vsHeLRTPLt~i~~~~e~l~~------~~~~~~~~i~~~~~rm~~li~dlL~~aR 67 (67)
T d1joya_ 10 DDRTLLMAGVSHDLRTPLTRIRLATEMMSE------QDGYLAESINKDIEECNAIIEQFIDYLR 67 (67)
T ss_dssp SSHHHHHTTTHHHHHHHHHHHHHHHHHHHH------HHTHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhh------ccHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 457789999999999999999999999853 2356788999999999999999999975
No 49
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.31 E-value=0.0096 Score=59.77 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEE
Q 001330 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFE 593 (1099)
Q Consensus 514 L~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 593 (1099)
+.+++.-||+||+... ...|.|.+. ... .-.|.
T Consensus 7 ~~~~v~ELi~NsiDA~-At~I~i~i~--~~g--------------------------------------------~~~i~ 39 (203)
T d1h7sa2 7 LSTAVKELVENSLDAG-ATNIDLKLK--DYG--------------------------------------------VDLIE 39 (203)
T ss_dssp HHHHHHHHHHHHHHTT-CSEEEEEEE--GGG--------------------------------------------TSEEE
T ss_pred HHHHHHHHHHHHHcCC-CCEEEEEEE--cCC--------------------------------------------EEEEE
Confidence 5689999999999963 456666542 110 12488
Q ss_pred EEeCCCCCCcccHhhhccccccccccCCC------CCCCccccHHHHHHHHHhcCCEEEEEecCCCc-eeEEEEE
Q 001330 594 VDDTGKGIPKDKQNSIFEEFVQVKETALG------HQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE-RGVCFRF 661 (1099)
Q Consensus 594 V~DtG~GI~~e~l~~IFe~F~q~d~s~~~------~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg-~Gt~f~~ 661 (1099)
|.|+|.||++++++.+|.++...+..... ..|.-|.+|+= |.. -+++.+.++..++ .|....+
T Consensus 40 V~DnG~Gi~~~dl~~~~~~~~tsk~~~~~~~~~~~t~GfrGeaL~s---i~~--~s~~~i~s~~~~~~~~~~i~~ 109 (203)
T d1h7sa2 40 VSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSS---LCA--LSDVTISTCHASAKVGTRLMF 109 (203)
T ss_dssp EEECSCCCCGGGSGGGGC----------CCTTCSEEESSSSSHHHH---HHH--HSEEEEEEECTTCSSCEEEEE
T ss_pred EeeCCcccCHHHhhhhhhheeecccccccccccccccCccchhhhh---hhh--ccceEEEeecCCCchhEEEEE
Confidence 99999999999999999998776532111 11233556653 222 2567777765432 3444433
No 50
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=96.05 E-value=0.014 Score=53.38 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=78.0
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
++|+++++++..+..++.+++. .|+.+..+.+..+..+.+++.
T Consensus 2 krILiVDD~~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~~~~~------------------------------------ 44 (123)
T d1mb3a_ 2 KKVLIVEDNELNMKLFHDLLEA-QGYETLQTREGLSALSIAREN------------------------------------ 44 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESCHHHHHHHHHHH------------------------------------
T ss_pred ceEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHhC------------------------------------
Confidence 5788999999999999999998 899999998887665554432
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+.. +..+.++.++........+++.+...... ..+.....
T Consensus 45 --------------------------~~dlil~D~~mp~~-dG~el~~~ir~~~~~~~iPii~lt~~~~~--~~~~~~~~ 95 (123)
T d1mb3a_ 45 --------------------------KPDLILMDIQLPEI-SGLEVTKWLKEDDDLAHIPVVAVTAFAMK--GDEERIRE 95 (123)
T ss_dssp --------------------------CCSEEEEESBCSSS-BHHHHHHHHHHSTTTTTSCEEEEC--------CHHHHHH
T ss_pred --------------------------CCCEEEEEeccCCC-cHHHHHHHHHhCCCcCCCCeEEEEEecCH--HHHHHHHH
Confidence 12455666654432 24445555555544445555655433222 22334556
Q ss_pred CccccccccCCCcchHHHHHhhcc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
.|++.++.||+....|.+.++.+.
T Consensus 96 ~G~~~~l~KP~~~~~L~~~i~~~l 119 (123)
T d1mb3a_ 96 GGCEAYISKPISVVHFLETIKRLL 119 (123)
T ss_dssp HTCSEEECSSCCHHHHHHHHHHHH
T ss_pred cCCCEEEECCCCHHHHHHHHHHHH
Confidence 788999999999999999887654
No 51
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=95.97 E-value=0.012 Score=53.47 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=76.6
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCceEE-EecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIKVT-IVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
|.+|+++++++..+..+..+++. .|+.+. .+.+..+..+.+++.
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~-~g~~v~~~a~~~~~al~~~~~~---------------------------------- 45 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITK-AGYEVAGEATNGREAVEKYKEL---------------------------------- 45 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHH----------------------------------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH-cCCceEEEECCHHHHHHHHHhc----------------------------------
Confidence 67899999999999999999998 899875 567776555444332
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
.+.++++|...+.. +..+.++++++..+. ++++.+.... ........
T Consensus 46 ----------------------------~~dliilD~~mp~~-~G~e~~~~ir~~~~~--~pvi~ls~~~--~~~~~~~a 92 (118)
T d1u0sy_ 46 ----------------------------KPDIVTMDITMPEM-NGIDAIKEIMKIDPN--AKIIVCSAMG--QQAMVIEA 92 (118)
T ss_dssp ----------------------------CCSEEEEECSCGGG-CHHHHHHHHHHHCTT--CCEEEEECTT--CHHHHHHH
T ss_pred ----------------------------cCCEEEEecCCCCC-CHHHHHHHHHHhCCC--CcEEEEEccC--CHHHHHHH
Confidence 13456666655433 334455555444443 4455544322 22333456
Q ss_pred ccCccccccccCCCcchHHHHHhhc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
...|.+.++.||+..++|.+.++++
T Consensus 93 ~~~Ga~~yl~KP~~~~~L~~~l~~v 117 (118)
T d1u0sy_ 93 IKAGAKDFIVKPFQPSRVVEALNKV 117 (118)
T ss_dssp HHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 6788999999999999999888653
No 52
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
Probab=95.79 E-value=0.0055 Score=62.35 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhHhhccCCCeEEEEEEEeccccchhhhhccccchhhccchhhhccCCCCCccccccccccCCCceeEEEE
Q 001330 514 LKQILCNLVSNSMKFTSEGHISVRAAVKKKSFKQDIIASNRNVISKCLSKLFFRNKEGFDDLDALHSVERNPNLLQFEFE 593 (1099)
Q Consensus 514 L~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 593 (1099)
+.+++.-||.|||... .-.|.|.+.. .. .-.|+
T Consensus 25 ~~~~vkELveNsiDA~-At~I~V~i~~--~g--------------------------------------------~~~i~ 57 (218)
T d1b63a2 25 PASVVKELVENSLDAG-ATRIDIDIER--GG--------------------------------------------AKLIR 57 (218)
T ss_dssp HHHHHHHHHHHHHHTT-CSEEEEEEEG--GG--------------------------------------------TSEEE
T ss_pred HHHHHHHHHhhhhcCC-CCEEEEEEEc--CC--------------------------------------------ccEEE
Confidence 5689999999999974 3356655421 10 12489
Q ss_pred EEeCCCCCCcccHhhhccccccccccC------CCCCCCccccHHHHHHHHHhcCCEEEEEecCCC
Q 001330 594 VDDTGKGIPKDKQNSIFEEFVQVKETA------LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653 (1099)
Q Consensus 594 V~DtG~GI~~e~l~~IFe~F~q~d~s~------~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~g 653 (1099)
|.|+|.||++++++.++++++..+-.. ....|--|-+|+=...+ +++.+.++..+
T Consensus 58 V~DnG~Gi~~~d~~~~~~r~~TSKi~~~~dl~~~~t~GFRGEAL~Si~~v-----s~l~I~s~~~~ 118 (218)
T d1b63a2 58 IRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSV-----SRLTLTSRTAE 118 (218)
T ss_dssp EEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTT-----SEEEEEEECTT
T ss_pred EeeCCCCcCHHHHHhhHhccccccccchhhcchhhhhccchhHHHHhhhc-----CceEEeeecCC
Confidence 999999999999999999999875321 12223346677633222 67888776543
No 53
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=95.41 E-value=0.029 Score=51.16 Aligned_cols=114 Identities=13% Similarity=0.148 Sum_probs=76.8
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
+|+++++++..+..+..+++. .|+.+..+.+.++..+.+++.
T Consensus 3 kILiVDD~~~~~~~l~~~L~~-~g~~v~~a~~~~eal~~~~~~------------------------------------- 44 (121)
T d1ys7a2 3 RVLVVDDDSDVLASLERGLRL-SGFEVATAVDGAEALRSATEN------------------------------------- 44 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHS-------------------------------------
T ss_pred EEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHhC-------------------------------------
Confidence 688888999999999999998 899999999887665544321
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
.+.++++|...+.. +..+.++..+...+. ++++.+.... +..........
T Consensus 45 -------------------------~~dlvl~D~~mP~~-~G~el~~~ir~~~~~--~piI~lt~~~--~~~~~~~a~~~ 94 (121)
T d1ys7a2 45 -------------------------RPDAIVLDINMPVL-DGVSVVTALRAMDND--VPVCVLSARS--SVDDRVAGLEA 94 (121)
T ss_dssp -------------------------CCSEEEEESSCSSS-CHHHHHHHHHHTTCC--CCEEEEECCC--TTTCCCTTTTT
T ss_pred -------------------------CCCEEEEEeeccCc-ccHHHHHHHHhcCCC--CEEEEEEeeC--CHHHHHHHHHC
Confidence 13456666655332 223344444444333 4455544332 22334466778
Q ss_pred ccccccccCCCcchHHHHHhhc
Q 001330 870 ICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
|.+.++.||+....|...++.+
T Consensus 95 Ga~dyl~KP~~~~~L~~~i~~~ 116 (121)
T d1ys7a2 95 GADDYLVKPFVLAELVARVKAL 116 (121)
T ss_dssp TCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCEEEECCCCHHHHHHHHHHH
Confidence 9999999999999998888654
No 54
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=95.21 E-value=0.037 Score=50.23 Aligned_cols=115 Identities=11% Similarity=0.075 Sum_probs=76.5
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
++|+++++++..+..++..++. .|+.+..+.+.++..+.+++.
T Consensus 2 krILvVDD~~~~~~~l~~~L~~-~g~~v~~a~~g~eal~~~~~~------------------------------------ 44 (119)
T d1peya_ 2 EKILIVDDQSGIRILLNEVFNK-EGYQTFQAANGLQALDIVTKE------------------------------------ 44 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHH------------------------------------
T ss_pred CEEEEEeCCHHHHHHHHHHHHH-cCCEEEEeCCHHHHHHHHHhC------------------------------------
Confidence 5789999999999999999998 899999999887665544432
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+.. +..+.+++.+...+. .+++.+.... ..........
T Consensus 45 --------------------------~~dlillD~~mP~~-~G~el~~~lr~~~~~--~pvi~lt~~~--~~~~~~~a~~ 93 (119)
T d1peya_ 45 --------------------------RPDLVLLDMKIPGM-DGIEILKRMKVIDEN--IRVIIMTAYG--ELDMIQESKE 93 (119)
T ss_dssp --------------------------CCSEEEEESCCTTC-CHHHHHHHHHHHCTT--CEEEEEESSC--CHHHHHHHHH
T ss_pred --------------------------CCCEEEEeccCCCC-CHHHHHHHHHHhCCC--CcEEEEecCC--CHHHHHHHHH
Confidence 13455666655433 233444444444433 3455444322 1222334566
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.|.+.++.||+....|.+.++.+
T Consensus 94 ~Ga~~yl~KP~~~~~L~~~v~~~ 116 (119)
T d1peya_ 94 LGALTHFAKPFDIDEIRDAVKKY 116 (119)
T ss_dssp TTCCEEEESSCCHHHHHHHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHH
Confidence 88999999999999999888753
No 55
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=95.18 E-value=0.05 Score=49.36 Aligned_cols=115 Identities=10% Similarity=0.172 Sum_probs=76.3
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.+|+++++++..+..++.+++. .|+.+..+.+.++..+.+++.
T Consensus 3 krILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~~~------------------------------------ 45 (121)
T d1mvoa_ 3 KKILVVDDEESIVTLLQYNLER-SGYDVITASDGEEALKKAETE------------------------------------ 45 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHH------------------------------------
T ss_pred CCEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHhcc------------------------------------
Confidence 4789999999999999999998 899999999988766555432
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+... ....+...+...+.. +++.+.... ..........
T Consensus 46 --------------------------~~dlillD~~mp~~~-G~~~~~~~r~~~~~~--~ii~lt~~~--~~~~~~~~~~ 94 (121)
T d1mvoa_ 46 --------------------------KPDLIVLDVMLPKLD-GIEVCKQLRQQKLMF--PILMLTAKD--EEFDKVLGLE 94 (121)
T ss_dssp --------------------------CCSEEEEESSCSSSC-HHHHHHHHHHTTCCC--CEEEEECTT--CCCCHHHHHH
T ss_pred --------------------------cccEEEecccccCCC-CchhhhhhhccCCCC--EEEEEEeeC--CHHHHHHHHH
Confidence 134566666654432 223344444443333 333333222 1223345567
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.|++.++.||+....|...++.+
T Consensus 95 ~Ga~~yl~KP~~~~~L~~~i~~~ 117 (121)
T d1mvoa_ 95 LGADDYMTKPFSPREVNARVKAI 117 (121)
T ss_dssp TTCCEEEESSCCHHHHHHHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHH
Confidence 89999999999999998887643
No 56
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=94.80 E-value=0.02 Score=53.23 Aligned_cols=120 Identities=17% Similarity=0.159 Sum_probs=74.6
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
.|.+|+++++++..+..++.+++. +|..+..+.++++..+ .+.
T Consensus 6 ~g~rILvVDD~~~~~~~l~~~L~~-~G~~v~~a~~g~eal~---~l~--------------------------------- 48 (134)
T d1dcfa_ 6 TGLKVLVMDENGVSRMVTKGLLVH-LGCEVTTVSSNEECLR---VVS--------------------------------- 48 (134)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHH---HCC---------------------------------
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHH-CCCEEEEECCHHHHHH---Hhh---------------------------------
Confidence 678999999999999999999998 8999999988765432 110
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCCh--HHHHHHHHhccccCCCCcceEEEeccchhccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSV--SELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSRE 864 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~--~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 864 (1099)
..+.++++|...+.. -++.+.+++...........++.+.... ....+.
T Consensus 49 ---------------------------~~~dlillD~~mP~~dG~el~~~ir~~~~~~~~~~~~ii~lT~~~--~~~~~~ 99 (134)
T d1dcfa_ 49 ---------------------------HEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNT--DKSTKE 99 (134)
T ss_dssp ---------------------------TTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCC--SHHHHH
T ss_pred ---------------------------cCCCeEEEEeccCCCchHHHHHHHHHhcccccCCCCeEEEEeCCC--CHHHHH
Confidence 013456666654322 2233333221111112223444443221 112333
Q ss_pred ccccCccccccccCCCcchHHHHHhhcc
Q 001330 865 YRLLPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 865 ~~~~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
.....|.+.++.||+..+.|.+.+..+.
T Consensus 100 ~~~~~G~~~~l~KP~~~~~L~~~l~~~l 127 (134)
T d1dcfa_ 100 KCMSFGLDGVLLKPVSLDNIRDVLSDLL 127 (134)
T ss_dssp HHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEECCCCHHHHHHHHHHHh
Confidence 4556889999999999999999987653
No 57
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}
Probab=94.79 E-value=0.051 Score=49.22 Aligned_cols=114 Identities=13% Similarity=0.169 Sum_probs=76.6
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
+|+++++++..+..++.+++. .|+.+..+.+.++....+++.
T Consensus 2 rILvVDDd~~~~~~l~~~L~~-~G~~v~~a~~g~eal~~l~~~------------------------------------- 43 (119)
T d2pl1a1 2 RVLVVEDNALLRHHLKVQIQD-AGHQVDDAEDAKEADYYLNEH------------------------------------- 43 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHS-------------------------------------
T ss_pred EEEEEeCCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHhc-------------------------------------
Confidence 578899999999999999998 899999999888665544321
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
.+.++++|...+... ..+.++..+...+. .+++.+..... ..........
T Consensus 44 -------------------------~~dliilD~~mP~~~-G~e~~~~i~~~~~~--~pvi~lt~~~~--~~~~~~a~~~ 93 (119)
T d2pl1a1 44 -------------------------IPDIAIVDLGLPDED-GLSLIRRWRSNDVS--LPILVLTARES--WQDKVEVLSA 93 (119)
T ss_dssp -------------------------CCSEEEECSCCSSSC-HHHHHHHHHHTTCC--SCEEEEESCCC--HHHHHHHHHT
T ss_pred -------------------------ccceeehhccCCCch-hHHHHHHHHhcCcc--cceEeeeccCC--HHHHHHHHHc
Confidence 134566666654332 23455555554443 34444433222 2233456678
Q ss_pred ccccccccCCCcchHHHHHhhc
Q 001330 870 ICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
|++.++.||+....|...++.+
T Consensus 94 Ga~~yl~KP~~~~~L~~~v~~~ 115 (119)
T d2pl1a1 94 GADDYVTKPFHIEEVMARMQAL 115 (119)
T ss_dssp TCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCEEEECCCCHHHHHHHHHHH
Confidence 9999999999999988887643
No 58
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}
Probab=94.75 E-value=0.024 Score=51.59 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=78.2
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
++|+++++++..+..+..+++. .|+.+..+.+.++..+.+.
T Consensus 1 KkILiVDD~~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~-------------------------------------- 41 (121)
T d1zesa1 1 RRILVVEDEAPIREMVCFVLEQ-NGFQPVEAEDYDSAVNQLN-------------------------------------- 41 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEECSHHHHHHHSS--------------------------------------
T ss_pred CEEEEEeCCHHHHHHHHHHHHH-CCCEEEEECChHHHHHHHH--------------------------------------
Confidence 3688999999999999999998 8999999888765433211
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
...+.++++|...+.. +..+..+.++........+++.+..... .........
T Consensus 42 ------------------------~~~~dlil~D~~mp~~-~G~~l~~~lr~~~~~~~~pvi~lt~~~~--~~~~~~~~~ 94 (121)
T d1zesa1 42 ------------------------EPWPDLILLDWMLPGG-SGIQFIKHLKRESMTRDIPVVMLTARGE--EEDRVRGLE 94 (121)
T ss_dssp ------------------------SSCCSEEEECSSCTTS-CHHHHHHHHHHSTTTTTSCEEEEESCCS--HHHHHHHHH
T ss_pred ------------------------ccCCCEEEeecCCCCC-CHHHHHHHHHhCccCCCCeEEEEECCCC--HHHHHHHHH
Confidence 0124567777665443 3444555555544444556666544322 223335556
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.|++.++.||+....|...++.+
T Consensus 95 ~G~~d~l~KP~~~~~L~~~v~~~ 117 (121)
T d1zesa1 95 TGADDYITKPFSPKELVARIKAV 117 (121)
T ss_dssp HTCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHH
Confidence 78899999999999998877643
No 59
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=94.71 E-value=0.055 Score=49.16 Aligned_cols=114 Identities=13% Similarity=0.137 Sum_probs=75.2
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
+|+++++++..+..++.+++. .|+.+..+.+.+...+.++..
T Consensus 3 rILiVdDd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~~~------------------------------------- 44 (122)
T d1kgsa2 3 RVLVVEDERDLADLITEALKK-EMFTVDVCYDGEEGMYMALNE------------------------------------- 44 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHS-------------------------------------
T ss_pred EEEEEeCCHHHHHHHHHHHHH-CCCEEEEEcchHHHHHHHHhh-------------------------------------
Confidence 688999999999999999998 899999999888655544321
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
.+.++++|...+... ...++..++...+. .+++.+..... ...+......
T Consensus 45 -------------------------~~dlillD~~mp~~~-g~~~~~~lr~~~~~--~piI~lt~~~~--~~~~~~~~~~ 94 (122)
T d1kgsa2 45 -------------------------PFDVVILDIMLPVHD-GWEILKSMRESGVN--TPVLMLTALSD--VEYRVKGLNM 94 (122)
T ss_dssp -------------------------CCSEEEEESCCSSSC-HHHHHHHHHHTTCC--CCEEEEESSCH--HHHHHHTCCC
T ss_pred -------------------------Cccccccccccccch-hHHHHHHHHhcCCC--CcEEEEcCCCC--HHHHHHHHHc
Confidence 234566666554332 22333444444333 33444433222 1233456678
Q ss_pred ccccccccCCCcchHHHHHhhc
Q 001330 870 ICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
|++.++.||+....|...++.+
T Consensus 95 Ga~~yl~KP~~~~~L~~~i~~~ 116 (122)
T d1kgsa2 95 GADDYLPKPFDLRELIARVRAL 116 (122)
T ss_dssp CCSEEEESSCCHHHHHHHHHHH
T ss_pred CCceeecCCCCHHHHHHHHHHH
Confidence 9999999999999998887654
No 60
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}
Probab=94.70 E-value=0.042 Score=50.12 Aligned_cols=115 Identities=13% Similarity=0.101 Sum_probs=76.6
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.+|+++++++..++.++.+++. .|+.+..+.+.+...+.+++
T Consensus 4 ~~ILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~~~~------------------------------------- 45 (123)
T d1dbwa_ 4 YTVHIVDDEEPVRKSLAFMLTM-NGFAVKMHQSAEAFLAFAPD------------------------------------- 45 (123)
T ss_dssp CEEEEEESSHHHHHHHHHHHHH-TTCEEEEESCHHHHHHHGGG-------------------------------------
T ss_pred CEEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHhh-------------------------------------
Confidence 4788999999999999999998 89999988877654332110
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
..+.++++|...+.. +..++++..+...+.. +++.+.... .......+..
T Consensus 46 -------------------------~~~dlvi~D~~mp~~-~G~e~~~~lr~~~~~~--~iI~lt~~~--~~~~~~~a~~ 95 (123)
T d1dbwa_ 46 -------------------------VRNGVLVTDLRMPDM-SGVELLRNLGDLKINI--PSIVITGHG--DVPMAVEAMK 95 (123)
T ss_dssp -------------------------CCSEEEEEECCSTTS-CHHHHHHHHHHTTCCC--CEEEEECTT--CHHHHHHHHH
T ss_pred -------------------------cCCcEEEEeccCccc-cchHHHHHHHhcCCCC--eEEEEEeeC--CHHHHHHHHH
Confidence 124567777765443 3344555555444433 444443332 2233445667
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.|.+.++.||+....|.+.++..
T Consensus 96 ~Ga~~yl~KP~~~~~L~~~i~~a 118 (123)
T d1dbwa_ 96 AGAVDFIEKPFEDTVIIEAIERA 118 (123)
T ss_dssp TTCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHH
Confidence 88999999999999999888754
No 61
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=94.70 E-value=0.044 Score=50.42 Aligned_cols=120 Identities=13% Similarity=0.224 Sum_probs=79.2
Q ss_pred eEEEEecChHHHHHHHHHhhhccCce-EEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIK-VTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~-v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
+|+++++++..+..+..+++. +|+. +..+.++++..+.+++....
T Consensus 3 rVLvVDD~~~~~~~l~~~L~~-~g~~~v~~a~~g~eAl~~l~~~~~~--------------------------------- 48 (128)
T d2r25b1 3 KILVVEDNHVNQEVIKRMLNL-EGIENIELACDGQEAFDKVKELTSK--------------------------------- 48 (128)
T ss_dssp CEEEECSCHHHHHHHHHHHHH-TTCCCEEEESSHHHHHHHHHHHHHH---------------------------------
T ss_pred EEEEEeCCHHHHHHHHHHHHH-cCCeEEEEEcChHHHHHHHHhhhhc---------------------------------
Confidence 688999999999999999998 7875 78888888766655543110
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
...+.++++|...+... ..+.++..++... ...+++.+..... .........
T Consensus 49 ------------------------~~~~dlillD~~mP~~d-G~el~~~ir~~~~-~~~piI~lT~~~~--~~~~~~~~~ 100 (128)
T d2r25b1 49 ------------------------GENYNMIFMDVQMPKVD-GLLSTKMIRRDLG-YTSPIVALTAFAD--DSNIKECLE 100 (128)
T ss_dssp ------------------------TCCCSEEEECSCCSSSC-HHHHHHHHHHHSC-CCSCEEEEESCCS--HHHHHHHHH
T ss_pred ------------------------cCCCCEEEEEeCCCCCC-HHHHHHHHHHccC-CCCeEEEEECCCC--HHHHHHHHH
Confidence 12356677777665432 3344444444332 2344554443322 233445667
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.|.+.++.||+...+|.+.++.+
T Consensus 101 ~G~~~~l~KP~~~~~L~~~l~~~ 123 (128)
T d2r25b1 101 SGMNGFLSKPIKRPKLKTILTEF 123 (128)
T ss_dssp TTCSEEEESSCCHHHHHHHHHHH
T ss_pred cCCCEEEECCCCHHHHHHHHHHH
Confidence 89999999999999999998754
No 62
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=94.46 E-value=0.06 Score=50.14 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=75.9
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.+|+++++++..+..++.+++. .|+.+..+.+.++..+.+.+.
T Consensus 2 arILiVDD~~~~~~~l~~~L~~-~g~~v~~a~~~~eal~~~~~~------------------------------------ 44 (139)
T d1w25a1 2 ARILVVDDIEANVRLLEAKLTA-EYYEVSTAMDGPTALAMAARD------------------------------------ 44 (139)
T ss_dssp CEEEEECSSTTHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHH------------------------------------
T ss_pred CEEEEEECCHHHHHHHHHHHHH-CCCEEEEEccchhhhhhhhcc------------------------------------
Confidence 4789999999999999999998 899999999988766655432
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+.. +........+........+++.+...... ........
T Consensus 45 --------------------------~~dlil~D~~~p~~-~G~~~~~~ir~~~~~~~~piI~lt~~~~~--~~~~~a~~ 95 (139)
T d1w25a1 45 --------------------------LPDIILLDVMMPGM-DGFTVCRKLKDDPTTRHIPVVLITALDGR--GDRIQGLE 95 (139)
T ss_dssp --------------------------CCSEEEEESCCSSS-CHHHHHHHHHHSTTTTTSCEEEEECSSCH--HHHHHHHH
T ss_pred --------------------------cceeeeeeccccCC-CchHHHHHhhhcccccCCCEEEEEcCCCH--HHHHHHHH
Confidence 12345555543322 12223333333333334456655433222 22335566
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.|++.++.||+....|...++.+
T Consensus 96 ~Ga~dyl~KP~~~~~L~~~i~~~ 118 (139)
T d1w25a1 96 SGASDFLTKPIDDVMLFARVRSL 118 (139)
T ss_dssp HTCCEEEESSCCHHHHHHHHHHH
T ss_pred cCCCEEEECCCCHHHHHHHHHHH
Confidence 89999999999999998777643
No 63
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}
Probab=94.36 E-value=0.067 Score=50.44 Aligned_cols=130 Identities=12% Similarity=0.126 Sum_probs=84.5
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCc--eEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNI--KVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSD 784 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~--~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 784 (1099)
...+|+++++++..+..++.+++. .|+ .+..+.++.+..+.+++......
T Consensus 5 ~~~~ILiVDD~~~~~~~l~~~L~~-~g~~~~v~~a~~g~eAl~~l~~~~~~~~--------------------------- 56 (149)
T d1k66a_ 5 ATQPLLVVEDSDEDFSTFQRLLQR-EGVVNPIYRCITGDQALDFLYQTGSYCN--------------------------- 56 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHH-TTBCSCEEEECSHHHHHHHHHTCCSSSC---------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHH-cCCceEEEEECChHHHHHHHHhhccccc---------------------------
Confidence 345688899999999999999998 676 67788888766555543210000
Q ss_pred CCCcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccc
Q 001330 785 TGHHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSRE 864 (1099)
Q Consensus 785 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 864 (1099)
......+.++++|...+. .+..++++.++........+++.+..... .....
T Consensus 57 -------------------------~~~~~~pdlillD~~mP~-~~G~el~~~ir~~~~~~~ipiI~lT~~~~--~~~~~ 108 (149)
T d1k66a_ 57 -------------------------PDIAPRPAVILLDLNLPG-TDGREVLQEIKQDEVLKKIPVVIMTTSSN--PKDIE 108 (149)
T ss_dssp -------------------------GGGCCCCSEEEECSCCSS-SCHHHHHHHHTTSTTGGGSCEEEEESCCC--HHHHH
T ss_pred -------------------------cccccCCCeEEccccccC-CCcHHHHHHHHhccccCCCeEEEEeCCCC--HHHHH
Confidence 001223567778877644 34556666666554444556666644322 22334
Q ss_pred ccccCccccccccCCCcchHHHHHhhcc
Q 001330 865 YRLLPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 865 ~~~~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
.....|.+.++.||+....|...++.+.
T Consensus 109 ~~~~~Ga~~~l~KP~~~~~L~~~i~~~l 136 (149)
T d1k66a_ 109 ICYSYSISSYIVKPLEIDRLTETVQTFI 136 (149)
T ss_dssp HHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 5566799999999999999988887543
No 64
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=94.13 E-value=0.09 Score=47.33 Aligned_cols=113 Identities=9% Similarity=0.179 Sum_probs=74.4
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
++|+++++++..+..++.+++. .|+.+..+.+.++..+.+++.
T Consensus 1 KrILiVdDd~~~~~~l~~~L~~-~g~~v~~a~~~~eal~~~~~~------------------------------------ 43 (117)
T d2a9pa1 1 KKILIVDDEKPISDIIKFNMTK-EGYEVVTAFNGREALEQFEAE------------------------------------ 43 (117)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHH------------------------------------
T ss_pred CEEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHhc------------------------------------
Confidence 3688889999999999999998 899999999988766555432
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+... ..+.++..++. + .++++.+..... ...+.....
T Consensus 44 --------------------------~~dlillD~~mp~~~-G~~~~~~i~~~-~--~~pvI~lt~~~~--~~~~~~a~~ 91 (117)
T d2a9pa1 44 --------------------------QPDIIILDLMLPEID-GLEVAKTIRKT-S--SVPILMLSAKDS--EFDKVIGLE 91 (117)
T ss_dssp --------------------------CCSEEEECSSCSSSC-HHHHHHHHHTT-C--CCCEEEEESCCS--HHHHHHHHH
T ss_pred --------------------------CCCEEEeccccCCCC-ccHHHHHHHhC-C--CCCEEEEecCCC--HHHHHHHHH
Confidence 134566666544332 23344444432 2 244554443222 222334566
Q ss_pred CccccccccCCCcchHHHHHhh
Q 001330 869 PICDHVISRPFHGSRLIEVLKL 890 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~ 890 (1099)
.|.+.++.||+....|...++.
T Consensus 92 ~Ga~d~l~KP~~~~~L~~~i~~ 113 (117)
T d2a9pa1 92 LGADDYVTKPFSNRELQARVKA 113 (117)
T ss_dssp HTCSEEEESSCCHHHHHHHHHH
T ss_pred cCCCEEEECCCCHHHHHHHHHH
Confidence 7889999999999999887764
No 65
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=94.07 E-value=0.054 Score=50.10 Aligned_cols=115 Identities=15% Similarity=0.165 Sum_probs=75.1
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
..-+|+++++++..+..++.++.. +|+.+..+.++....+.+..-
T Consensus 7 ~~~~ILiVDD~~~~~~~l~~~L~~-~g~~v~~a~~g~ea~~~~~~~---------------------------------- 51 (133)
T d2ayxa1 7 DDMMILVVDDHPINRRLLADQLGS-LGYQCKTANDGVDALNVLSKN---------------------------------- 51 (133)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHH-HTSEEEEECCSHHHHHHHHHS----------------------------------
T ss_pred CCCEEEEEECCHHHHHHHHHHHHH-cCCEEEEECcHHHHHHHHhcc----------------------------------
Confidence 456799999999999999999998 899999999888665443321
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCC--hHHHHHHHHhccccCCCCcceEEEeccchhccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGS--VSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSRE 864 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~--~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 864 (1099)
.+.++++|...+. --++++.+++ ..+. .+++.+..... .....
T Consensus 52 ----------------------------~~dlillD~~mP~~dG~el~~~ir~---~~~~--~pii~lt~~~~--~~~~~ 96 (133)
T d2ayxa1 52 ----------------------------HIDIVLSDVNMPNMDGYRLTQRIRQ---LGLT--LPVIGVTANAL--AEEKQ 96 (133)
T ss_dssp ----------------------------CCSEEEEEESSCSSCCHHHHHHHHH---HHCC--SCEEEEESSTT--SHHHH
T ss_pred ----------------------------CceEEEEeccCCCCCHHHHHHHHHH---hCCC--CCEEEEeccCC--HHHHH
Confidence 1345555554432 2233344433 2222 33444433222 22334
Q ss_pred ccccCccccccccCCCcchHHHHHhhc
Q 001330 865 YRLLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 865 ~~~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.....|.+.++.||+....|...+..+
T Consensus 97 ~~~~~G~~~~l~KP~~~~~L~~~l~~~ 123 (133)
T d2ayxa1 97 RCLESGMDSCLSKPVTLDVIKQTLTLY 123 (133)
T ss_dssp HHHHCCCEEEEESSCCHHHHHHHHHHH
T ss_pred HHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 556688999999999999999888654
No 66
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}
Probab=93.89 E-value=0.09 Score=49.22 Aligned_cols=125 Identities=11% Similarity=0.118 Sum_probs=80.6
Q ss_pred CeEEEEecChHHHHHHHHHhhhc-cCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 709 SQMILFIAGEERRRVLKRYIENS-LNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~-~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
.+|+++++++..+..++.+++.. .+..+..+.++.+..+.+++....
T Consensus 4 k~ILiVdD~~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~~-------------------------------- 51 (144)
T d1i3ca_ 4 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEY-------------------------------- 51 (144)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGG--------------------------------
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHhchhh--------------------------------
Confidence 47888888899999999999872 345777888877655444321000
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
.....+.++++|...... +..++++.++.......++++.+..... ........
T Consensus 52 -----------------------~~~~~pdlIllD~~mP~~-~G~el~~~ir~~~~~~~iPvi~lT~~~~--~~~~~~a~ 105 (144)
T d1i3ca_ 52 -----------------------ENSPRPNLILLDLNLPKK-DGREVLAEIKQNPDLKRIPVVVLTTSHN--EDDVIASY 105 (144)
T ss_dssp -----------------------TTCCCCSEEEECSCCSSS-CHHHHHHHHHHCTTTTTSCEEEEESCCC--HHHHHHHH
T ss_pred -----------------------hccCCCCEEEEECccccc-cchHHHHHHHhCcccCCCeEEEEECCCC--HHHHHHHH
Confidence 001235677888876543 3445556666544434556666554322 23344566
Q ss_pred cCccccccccCCCcchHHHHHhhc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
..|.+.++.||+..+.|...++.+
T Consensus 106 ~~Ga~~yl~KP~~~~~L~~~i~~l 129 (144)
T d1i3ca_ 106 ELHVNCYLTKSRNLKDLFKMVQGI 129 (144)
T ss_dssp HTTCSEEEECCSSHHHHHHHHHHH
T ss_pred HCCCCEEEECCCCHHHHHHHHHHH
Confidence 789999999999999998888755
No 67
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}
Probab=93.78 E-value=0.1 Score=48.57 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=80.3
Q ss_pred CCeEEEEecChHHHHHHHHHhhhc-cCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENS-LNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~-~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
.++|+++++++..+..++.++++. .+..+..+.++.+..+.+.+....
T Consensus 2 ~krILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~------------------------------- 50 (140)
T d1k68a_ 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEY------------------------------- 50 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGG-------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHhHHh-------------------------------
Confidence 367899999999999999999873 345788888877554443211000
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
.....+.++++|...+.. +..++++..+........+++.+...... ......
T Consensus 51 ------------------------~~~~~pdlillD~~mP~~-dG~el~~~ir~~~~~~~iPvI~ls~~~~~--~~~~~a 103 (140)
T d1k68a_ 51 ------------------------ANASRPDLILLDLNLPKK-DGREVLAEIKSDPTLKRIPVVVLSTSINE--DDIFHS 103 (140)
T ss_dssp ------------------------GSCCCCSEEEECSSCSSS-CHHHHHHHHHHSTTGGGSCEEEEESCCCH--HHHHHH
T ss_pred ------------------------hccCCCCEEEEeeccccc-cChHHHHHHHhCcccCCCcEEEEeCCCCH--HHHHHH
Confidence 001224677777776543 34555666655544344556665543221 223345
Q ss_pred ccCccccccccCCCcchHHHHHhhc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
...|++.++.||+..+.|...++.+
T Consensus 104 ~~~Ga~~yl~KP~~~~~L~~~i~~i 128 (140)
T d1k68a_ 104 YDLHVNCYITKSANLSQLFQIVKGI 128 (140)
T ss_dssp HHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred HHCCCCEEEECCCCHHHHHHHHHHH
Confidence 5678999999999999999888764
No 68
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Probab=93.77 E-value=0.07 Score=48.87 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=78.4
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCc-eEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNI-KVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~-~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
..+++++++++..++.++..++. +|+ .+..+.+..+..+ .+.
T Consensus 4 ~lriLvVDD~~~~r~~i~~~L~~-~g~~~v~~a~~g~~a~~---~~~--------------------------------- 46 (128)
T d1jbea_ 4 ELKFLVVDDFSTMRRIVRNLLKE-LGFNNVEEAEDGVDALN---KLQ--------------------------------- 46 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHH-TTCCCEEEESSHHHHHH---HHT---------------------------------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH-CCCcEEEEecCchHHHH---HHh---------------------------------
Confidence 35789999999999999999987 786 5677766654332 220
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
...+.++++|...+.. +..++++.++.......++++.+..... .......
T Consensus 47 --------------------------~~~~dlii~D~~mP~~-dG~el~~~ir~~~~~~~~piI~lt~~~~--~~~~~~a 97 (128)
T d1jbea_ 47 --------------------------AGGYGFVISDWNMPNM-DGLELLKTIRADGAMSALPVLMVTAEAK--KENIIAA 97 (128)
T ss_dssp --------------------------TCCCCEEEEESCCSSS-CHHHHHHHHHC--CCTTCCEEEEESSCC--HHHHHHH
T ss_pred --------------------------cCCCCEEEEecccccC-CHHHHHHHHHhCccCCCCcEEEEECcCC--HHHHHHH
Confidence 0124567777766443 4556666666655555566666554332 2223345
Q ss_pred ccCccccccccCCCcchHHHHHhhcc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLLP 892 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l~ 892 (1099)
...|.+.++.||+....|.+.+..+.
T Consensus 98 ~~~G~~~~l~KP~~~~~L~~~l~~~l 123 (128)
T d1jbea_ 98 AQAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 56789999999999999999887553
No 69
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}
Probab=93.74 E-value=0.087 Score=48.30 Aligned_cols=118 Identities=10% Similarity=0.168 Sum_probs=78.3
Q ss_pred CCeEEEEecChHHHHHHHHHhhhccCce-EEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 708 GSQMILFIAGEERRRVLKRYIENSLNIK-VTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 708 g~~v~l~~~~~~~~~~l~~~l~~~~g~~-v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
.-+|+++++++..+..+..+++. .|+. +..+.+.++..+.+.+
T Consensus 6 ~~kILiVDD~~~~~~~l~~~L~~-~g~~~v~~a~~~~~al~~l~~----------------------------------- 49 (129)
T d1p6qa_ 6 KIKVLIVDDQVTSRLLLGDALQQ-LGFKQITAAGDGEQGMKIMAQ----------------------------------- 49 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHT-TTCSCEECCSSHHHHHHHHHT-----------------------------------
T ss_pred CCEEEEEECCHHHHHHHHHHHHH-CCCeEEEEECCHHHHHHHHHh-----------------------------------
Confidence 45789999999999999999998 8885 6777776654433321
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
..+.++++|...+.. +..++.+..+........+++.+.... ........
T Consensus 50 ---------------------------~~~dlii~D~~mP~~-~G~el~~~lr~~~~~~~~pii~lt~~~--~~~~~~~a 99 (129)
T d1p6qa_ 50 ---------------------------NPHHLVISDFNMPKM-DGLGLLQAVRANPATKKAAFIILTAQG--DRALVQKA 99 (129)
T ss_dssp ---------------------------SCCSEEEECSSSCSS-CHHHHHHHHTTCTTSTTCEEEECCSCC--CHHHHHHH
T ss_pred ---------------------------CCCCeEEeeeecCCC-ChHHHHHHHHhCcccCCCeEEEEEecC--CHHHHHHH
Confidence 123566677666443 345556666655444555666554322 22333345
Q ss_pred ccCccccccccCCCcchHHHHHhhc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
...|.+.++.||+....|...++.+
T Consensus 100 ~~~G~~~~l~KP~~~~~L~~~i~~v 124 (129)
T d1p6qa_ 100 AALGANNVLAKPFTIEKMKAAIEAV 124 (129)
T ss_dssp HHHTCSCEECCCSSHHHHHHHHHHH
T ss_pred HHCCCCEEEECCCCHHHHHHHHHHH
Confidence 5678899999999999998888754
No 70
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=93.21 E-value=0.13 Score=46.64 Aligned_cols=113 Identities=17% Similarity=0.239 Sum_probs=74.5
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
+|+++++++..+..+..+++. .|+.+..+.+.+...+.+...
T Consensus 4 ~ILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~~~------------------------------------- 45 (121)
T d1xhfa1 4 HILIVEDELVTRNTLKSIFEA-EGYDVFEATDGAEMHQILSEY------------------------------------- 45 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHT-TTCEEEEESSHHHHHHHHHHS-------------------------------------
T ss_pred EEEEEECCHHHHHHHHHHHHH-CCCEEEEECChHHHHHHHHhc-------------------------------------
Confidence 688999999999999999998 899999998887665544321
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
.+.++++|...+.... ...++..+.. + .++++.+.... ....+......
T Consensus 46 -------------------------~~dlii~D~~mp~~~G-~~~~~~~r~~-~--~~pii~lt~~~--~~~~~~~a~~~ 94 (121)
T d1xhfa1 46 -------------------------DINLVIMDINLPGKNG-LLLARELREQ-A--NVALMFLTGRD--NEVDKILGLEI 94 (121)
T ss_dssp -------------------------CCSEEEECSSCSSSCH-HHHHHHHHHH-C--CCEEEEEESCC--SHHHHHHHHHH
T ss_pred -------------------------CCCEEEeecccCCccC-cHHHHHHHhc-C--CCcEEEEECCC--CHHHHHHHHHc
Confidence 1345566655433222 2333333332 2 34555544322 22334456678
Q ss_pred ccccccccCCCcchHHHHHhhc
Q 001330 870 ICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
|++.++.||+....|...++.+
T Consensus 95 Ga~dyl~KP~~~~~L~~~v~~~ 116 (121)
T d1xhfa1 95 GADDYITKPFNPRELTIRARNL 116 (121)
T ss_dssp TCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCEEEeCCCCHHHHHHHHHHH
Confidence 8999999999999998877644
No 71
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=93.17 E-value=0.099 Score=47.77 Aligned_cols=114 Identities=9% Similarity=0.145 Sum_probs=75.3
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
+|++++++...++.+..+++. .|+.+..+.+.+.... .+.
T Consensus 4 ~ILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~---~~~------------------------------------ 43 (128)
T d1yioa2 4 TVFVVDDDMSVREGLRNLLRS-AGFEVETFDCASTFLE---HRR------------------------------------ 43 (128)
T ss_dssp EEEEECSCHHHHHHHHHHHHT-TTCEEEEESSHHHHHH---HCC------------------------------------
T ss_pred EEEEEECCHHHHHHHHHHHHH-cCCCccccccHHHHHH---HHH------------------------------------
Confidence 688888889999999999998 8999998887764432 210
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
...+.++++|...+.. +....+...+...+.. +++.+.... ...........
T Consensus 44 -----------------------~~~~dliilD~~mp~~-~G~~~~~~i~~~~~~~--~ii~lt~~~--~~~~~~~a~~~ 95 (128)
T d1yioa2 44 -----------------------PEQHGCLVLDMRMPGM-SGIELQEQLTAISDGI--PIVFITAHG--DIPMTVRAMKA 95 (128)
T ss_dssp -----------------------TTSCEEEEEESCCSSS-CHHHHHHHHHHTTCCC--CEEEEESCT--TSCCCHHHHHT
T ss_pred -----------------------hcCCCEeehhhhcccc-hhHHHHHHHHhhCCCC--eEEEEEEEC--CHHHHHHHHHC
Confidence 1124667777765433 2334445555544433 344443322 23334456678
Q ss_pred ccccccccCCCcchHHHHHhhc
Q 001330 870 ICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
|.+.++.||+....|...++..
T Consensus 96 Ga~dyl~KP~~~~~L~~~i~~~ 117 (128)
T d1yioa2 96 GAIEFLPKPFEEQALLDAIEQG 117 (128)
T ss_dssp TEEEEEESSCCHHHHHHHHHHH
T ss_pred CCCEEEECCCCHHHHHHHHHHH
Confidence 8999999999999998887643
No 72
>d2p7ja2 d.110.6.2 (A:9-180) GGDEF family protein VP0354 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=92.97 E-value=0.31 Score=46.52 Aligned_cols=105 Identities=11% Similarity=0.043 Sum_probs=66.9
Q ss_pred chhhHHHHHhcccccccceeEeeccceeeE-EEecCCceEEEEecCCCCcceeeccccCccccccccccccCCccccCch
Q 001330 99 KVAPTLFLALSTIPHLSLVSYLGLDGLSFS-YFNDGDQTLAVYSNSSFAANWYTQPVNRDTGMLYGNAIASIPIVSANAS 177 (1099)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 177 (1099)
+++..+.......|...+|.++..+|-... .-++.+.. .+ + ......+..+++
T Consensus 55 ~l~~~~~~~~~~~~~~~~i~lid~~G~~~~~~~~~~~~~-----------~~-------------~--~~~~~~~~~~r~ 108 (172)
T d2p7ja2 55 ILENMWSSVARNQKLYKQIRFLDTSGTEKVRIKYDFKTS-----------IA-------------G--PSLILRDKSARE 108 (172)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECTTSBEEEEEEEETTTT-----------EE-------------E--ECCCCCBCTTSH
T ss_pred HHHHHHHHHhhhhcceeeEEEECCCCCEEEEEecCCCCc-----------cc-------------c--CccccccchhhH
Confidence 455445555788999999999999996543 32331111 00 0 012234789999
Q ss_pred hhHhhhcCCCCccccc-cc-------ccccccceeeeeeee--CCC--ceEEeccchHHHHHHh
Q 001330 178 WFQEVINSTNGYSSLV-TG-------LNKEEGSIFLHTFAM--DGT--GFISLGFPAKVVIDLF 229 (1099)
Q Consensus 178 ~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~--~~~--~~i~~~~~~~~~~~~~ 229 (1099)
||++++....+...+. .. |...+-+.+-.+.|| +|+ |++++.+....+.++|
T Consensus 109 yf~~a~~~~~~~~~~s~~~~~~~~g~~~~~~~p~i~~a~Pv~~~g~~~Gvlvi~i~l~~l~~~L 172 (172)
T d2p7ja2 109 YFKYAQSLDNEQISAWGIELERDKGELVYPLSPSLRILMPISVNDVRQGYLVLNVDIEYLSSLL 172 (172)
T ss_dssp HHHHHHTSCTTCCEEEEEEECEETTEECSSCCEEEEEEEEEEETTEEEEEEEEEEEHHHHHHHH
T ss_pred HHHHHHhCCCCeEEEeccccccccccceecCCeEEEEEEEEcCCCEEEEEEEEEEcHHHHHhhC
Confidence 9999998766644332 22 222334456667786 665 9999999999988765
No 73
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=92.86 E-value=0.16 Score=47.04 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=74.8
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
+|+++++++..+..++.+++. .|+.+..+.+.+.....+...
T Consensus 2 kILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~~~eAl~~l~~~------------------------------------- 43 (137)
T d1ny5a1 2 NVLVIEDDKVFRGLLEEYLSM-KGIKVESAERGKEAYKLLSEK------------------------------------- 43 (137)
T ss_dssp EEEEECCCHHHHHHHHHHHHH-HTCEEEEESSHHHHHHHHHHS-------------------------------------
T ss_pred EEEEEecCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHhhcc-------------------------------------
Confidence 578888999999999999988 899999998887665544321
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
.+.++++|...+... ....++.++...+.. +++.+.... ...........
T Consensus 44 -------------------------~~dlvilD~~mp~~~-G~e~~~~lr~~~~~~--piI~lT~~~--~~~~~~~a~~~ 93 (137)
T d1ny5a1 44 -------------------------HFNVVLLDLLLPDVN-GLEILKWIKERSPET--EVIVITGHG--TIKTAVEAMKM 93 (137)
T ss_dssp -------------------------CCSEEEEESBCSSSB-HHHHHHHHHHHCTTS--EEEEEEETT--CHHHHHHHHTT
T ss_pred -------------------------ccccchHHHhhhhhh-HHHHHHHHHHhCCCC--CEEEEECCC--CHHHHHHHHHc
Confidence 134566665543322 234444444433433 444443322 22334456678
Q ss_pred ccccccccCCCcchHHHHHhhc
Q 001330 870 ICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
|.+.++.||+....|...+...
T Consensus 94 Ga~dyl~KP~~~~~L~~~i~~~ 115 (137)
T d1ny5a1 94 GAYDFLTKPCMLEEIELTINKA 115 (137)
T ss_dssp TCCEEEEESCCHHHHHHHHHHH
T ss_pred CCCEEEeCCCCHHHHHHHHHHH
Confidence 9999999999999998887654
No 74
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=92.42 E-value=0.17 Score=45.53 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=72.9
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
+|+++++++..+..++.+++. .|+.+..+.+.++....+++.
T Consensus 2 nILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~~~eal~~l~~~------------------------------------- 43 (119)
T d1zh2a1 2 NVLIVEDEQAIRRFLRTALEG-DGMRVFEAETLQRGLLEAATR------------------------------------- 43 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHT-TTCEEEEESSHHHHHHHHHHH-------------------------------------
T ss_pred EEEEEECCHHHHHHHHHHHHH-CCCEEEEeCCHHHHHHHHHhc-------------------------------------
Confidence 588899999999999999998 899999999988765555432
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
.+.++++|...+... ..+..+..+... ..+++.+..... ..........
T Consensus 44 -------------------------~~dliilD~~mP~~~-G~e~~~~ir~~~---~~piI~lt~~~~--~~~~~~a~~~ 92 (119)
T d1zh2a1 44 -------------------------KPDLIILDLGLPDGD-GIEFIRDLRQWS---AVPVIVLSARSE--ESDKIAALDA 92 (119)
T ss_dssp -------------------------CCSEEEEESEETTEE-HHHHHHHHHTTC---CCCEEEEESCCS--HHHHHHHHHH
T ss_pred -------------------------CCCEEEeccccCCCC-CchHHHHHHhcc---CCcEEEEeccCC--HHHHHHHHHc
Confidence 124555555443322 223333443322 233444433221 1223345567
Q ss_pred ccccccccCCCcchHHHHHhhc
Q 001330 870 ICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
|.+.++.||+....|...++.+
T Consensus 93 Ga~dyl~KP~~~~~L~~~i~~~ 114 (119)
T d1zh2a1 93 GADDYLSKPFGIGELQARLRVA 114 (119)
T ss_dssp TCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCEEEECCCCHHHHHHHHHHH
Confidence 8899999999999998887654
No 75
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=92.19 E-value=0.18 Score=51.28 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=37.7
Q ss_pred EEEEEeCCCCCCcccHhh--------hcccccccccc----CCCCCCCccccHHHHHHHHHhcCCEE
Q 001330 591 EFEVDDTGKGIPKDKQNS--------IFEEFVQVKET----ALGHQEGLGLGLGIVQSMVHLMKGEI 645 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~--------IFe~F~q~d~s----~~~~~~GtGLGLaIvk~lVe~~gG~I 645 (1099)
.|+|.|+|.|||-+..+. ||-.+....+- ..-.+|..|+|.+.|--+-+.+--++
T Consensus 88 si~V~d~GrGIPv~~h~~~~~~~~e~ift~l~ag~nfd~~~~k~sgGlnGvG~~vvNalS~~f~vev 154 (239)
T d1pvga2 88 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILET 154 (239)
T ss_dssp EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEEEEEEE
T ss_pred EEEEEecCcceeeeeccccccchhheeeEeeccccccccccceeeCCeeccceeehhhhhHhhheee
Confidence 389999999999876544 77665543321 11234678999999988887774443
No 76
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=92.09 E-value=0.073 Score=48.42 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=73.2
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
+|+++++++..+..++..++. .|+.+..+.+.....+.+++
T Consensus 5 ~ILIVDDd~~~~~~l~~~L~~-~g~~v~~a~~~~~a~~~l~~-------------------------------------- 45 (123)
T d1krwa_ 5 IVWVVDDDSSIRWVLERALAG-AGLTCTTFENGNEVLAALAS-------------------------------------- 45 (123)
T ss_dssp EEEEESSSHHHHHHHHHHHHH-TTCEEEEESSSHHHHHHHTT--------------------------------------
T ss_pred EEEEEECCHHHHHHHHHHHHH-CCCEEEEeCCHHHHHHHHHh--------------------------------------
Confidence 578888888999999999998 89999999988765443321
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
..+.++++|...+.. +..++++..++..+. .+++.+..... .+........
T Consensus 46 ------------------------~~~dlii~D~~mp~~-~G~el~~~l~~~~~~--~piI~~t~~~~--~~~~~~a~~~ 96 (123)
T d1krwa_ 46 ------------------------KTPDVLLSDIRMPGM-DGLALLKQIKQRHPM--LPVIIMTAHSD--LDAAVSAYQQ 96 (123)
T ss_dssp ------------------------CCCSEEEECCSSSSS-TTHHHHHHHHHHSSS--CCEEESCCCSC--HHHHHHHHHH
T ss_pred ------------------------CCCCEEEehhhcCCc-hHHHHHHHHHHhCCC--CeEEEEecCCC--HHHHHHHHHc
Confidence 113456666654322 222334444433333 34555443322 2233355667
Q ss_pred ccccccccCCCcchHHHHHhhc
Q 001330 870 ICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
|.+.++.||+...+|...++..
T Consensus 97 Ga~dyl~KP~~~~eL~~~i~~~ 118 (123)
T d1krwa_ 97 GAFDYLPKPFDIDEAVALVERA 118 (123)
T ss_dssp TEEEECSSCCHHHHHHHHHHHH
T ss_pred CCCeEEeCcCCHHHHHHHHHHH
Confidence 8899999999999998887643
No 77
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=91.74 E-value=1.4 Score=40.34 Aligned_cols=119 Identities=10% Similarity=-0.019 Sum_probs=81.7
Q ss_pred CCEEEE--E--eCCHHHHHHHHHHHhhcCCeEEE---ECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH--
Q 001330 962 GKKFLV--V--EDDAIVLKVTSAVLGKLGAKFEV---CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG-- 1032 (1099)
Q Consensus 962 ~~~ILv--V--dDd~~~~~~l~~~L~~~G~~v~~---a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG-- 1032 (1099)
+++|++ + |-+..-..++..+|+..||+|.. ....++.++.+.+ ..+|+|.+-..|+...-
T Consensus 3 k~kVvi~~~~gD~H~lG~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~-----------~~~d~v~lS~~~~~~~~~~ 71 (137)
T d1ccwa_ 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIE-----------TKADAILVSSLYGQGEIDC 71 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHH-----------HTCSEEEEEECSSTHHHHH
T ss_pred CCEEEEEecCCChhHHHHHHHHHHHHHCCCeEEecccccCHHHHHHHHHh-----------cCCCEEEEeeccccchHHH
Confidence 457776 4 44566778889999999999884 3567777777754 36999999999886421
Q ss_pred HHHHHHHhccccccCCCccEEEEec----cC-CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTA----HA-MAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa----~~-~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~ 1094 (1099)
-++.+.+|+.. ..++||++=-+ .. ..+...+..+.|++......-+++++.+.+++-++
T Consensus 72 ~~~~~~l~~~~---~~~i~iivGG~~~~~~~~~~~~~~~l~~~Gv~~if~~~t~~~~~~~~l~~~l~ 135 (137)
T d1ccwa_ 72 KGLRQKCDEAG---LEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKDLN 135 (137)
T ss_dssp TTHHHHHHHTT---CTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc---cCCCEEEEeCCcCCCccccHHHHHHHHHcCCCEEECCCCCHHHHHHHHHHHhC
Confidence 13344555431 23577664322 12 24456666788999999888899999888887553
No 78
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=91.37 E-value=0.34 Score=43.35 Aligned_cols=114 Identities=12% Similarity=0.228 Sum_probs=72.5
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
.+|+++++++..+..+..++.. .|+.+..+.+.+.....+.+.
T Consensus 2 ~rILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~~~~a~~~~~~~------------------------------------ 44 (120)
T d1zgza1 2 HHIVIVEDEPVTQARLQSYFTQ-EGYTVSVTASGAGLREIMQNQ------------------------------------ 44 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHS------------------------------------
T ss_pred CEEEEEeCCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHhc------------------------------------
Confidence 3688999999999999999998 899999999887665544321
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+.... ...++..+.. + ..+++.+.... ....+..+..
T Consensus 45 --------------------------~~dliilD~~mp~~~g-~~~~~~~~~~-~--~~piI~lt~~~--~~~~~~~a~~ 92 (120)
T d1zgza1 45 --------------------------SVDLILLDINLPDENG-LMLTRALRER-S--TVGIILVTGRS--DRIDRIVGLE 92 (120)
T ss_dssp --------------------------CCSEEEEESCCSSSCH-HHHHHHHHTT-C--CCEEEEEESSC--CHHHHHHHHH
T ss_pred --------------------------CCCEEeeehhhccchh-HHHHHHHhcc-C--CCeEEEEEccC--CHHHHHHHHH
Confidence 1345555555433222 2333333322 1 23344443322 1223345666
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.|++.++.||+....|...++.+
T Consensus 93 ~Ga~dyl~KP~~~~~L~~~i~~~ 115 (120)
T d1zgza1 93 MGADDYVTKPLELRELVVRVKNL 115 (120)
T ss_dssp HTCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHH
Confidence 89999999999999888777543
No 79
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=90.69 E-value=0.2 Score=46.52 Aligned_cols=114 Identities=11% Similarity=0.163 Sum_probs=73.7
Q ss_pred eEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCcc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHHD 789 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 789 (1099)
+|+++++++..+..+..+++. .|+.+..+.+.......++
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~l~--------------------------------------- 41 (140)
T d1qkka_ 2 SVFLIDDDRDLRKAMQQTLEL-AGFTVSSFASATEALAGLS--------------------------------------- 41 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHH-TTCEEEEESCHHHHHHTCC---------------------------------------
T ss_pred EEEEEECCHHHHHHHHHHHHH-CCCEEEEeCChHHHHHHHh---------------------------------------
Confidence 578888889999999999998 8999998877764332110
Q ss_pred cccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccC
Q 001330 790 VALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLP 869 (1099)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 869 (1099)
...+.++++|...+.. +...+++..+...+. .+++.+.... ..+....+...
T Consensus 42 -----------------------~~~~dlil~D~~mP~~-~G~el~~~lr~~~~~--~pvI~lT~~~--~~~~~~~a~~~ 93 (140)
T d1qkka_ 42 -----------------------ADFAGIVISDIRMPGM-DGLALFRKILALDPD--LPMILVTGHG--DIPMAVQAIQD 93 (140)
T ss_dssp -----------------------TTCCSEEEEESCCSSS-CHHHHHHHHHHHCTT--SCEEEEECGG--GHHHHHHHHHT
T ss_pred -----------------------ccCcchHHHhhccCCC-CHHHHHHHHHHhCCC--CcEEEEECCC--CHHHHHHHHHc
Confidence 0123566777665443 333444444444443 3455444322 12333456678
Q ss_pred ccccccccCCCcchHHHHHhhc
Q 001330 870 ICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 870 ~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
|++.++.||+....|...++..
T Consensus 94 Ga~dyl~KP~~~~~L~~~i~~~ 115 (140)
T d1qkka_ 94 GAYDFIAKPFAADRLVQSARRA 115 (140)
T ss_dssp TCCEEEESSCCHHHHHHHHHHH
T ss_pred CCCEeecCCCCHHHHHHHHHHH
Confidence 9999999999999998887654
No 80
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=90.49 E-value=0.53 Score=42.32 Aligned_cols=116 Identities=11% Similarity=0.152 Sum_probs=72.0
Q ss_pred eEEEEecChHHHHHHHHHhhhccCce-EEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 710 QMILFIAGEERRRVLKRYIENSLNIK-VTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g~~-v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
+|+++++++..+..++.++....+.. +..+.+++...+.+++.
T Consensus 3 rILivDD~~~~~~~l~~~L~~~~~~~~v~~a~~g~~al~~~~~~------------------------------------ 46 (123)
T d1dz3a_ 3 KVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEK------------------------------------ 46 (123)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH------------------------------------
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhc------------------------------------
Confidence 67888888999999999998844444 44666666554444322
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
.+.++++|...+.. +..++++..+...+.. .+++.+..... .........
T Consensus 47 --------------------------~~dlillD~~mP~~-dG~e~~~~ir~~~~~~-~~ii~~t~~~~--~~~~~~a~~ 96 (123)
T d1dz3a_ 47 --------------------------RPDILLLDIIMPHL-DGLAVLERIRAGFEHQ-PNVIMLTAFGQ--EDVTKKAVE 96 (123)
T ss_dssp --------------------------CCSEEEEESCCSSS-CHHHHHHHHHHHCSSC-CEEEEEEETTC--HHHHHHHHH
T ss_pred --------------------------CCCEEEEcCCCCCC-CHHHHHHHHHhcCCCC-CeEEEEECcCC--HHHHHHHHH
Confidence 13456666665433 2334555555443332 34444433221 122334566
Q ss_pred CccccccccCCCcchHHHHHhhc
Q 001330 869 PICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
.|.+.++.||+...+|.+.++.+
T Consensus 97 ~Ga~~~l~KP~~~~~L~~~i~~v 119 (123)
T d1dz3a_ 97 LGASYFILKPFDMENLAHHIRQV 119 (123)
T ss_dssp TTCEEEEECSSCCTTHHHHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHH
Confidence 88999999999999999888754
No 81
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=89.70 E-value=0.75 Score=44.51 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=76.4
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEE-EecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVT-IVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
.+|+++++++..+..++.+++. .|+.+. .+.++++....++..
T Consensus 4 ~kILiVDD~~~~r~~l~~~L~~-~g~~vv~~a~~g~eal~~~~~~----------------------------------- 47 (190)
T d1s8na_ 4 RRVLIAEDEALIRMDLAEMLRE-EGYEIVGEAGDGQEAVELAELH----------------------------------- 47 (190)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHH-----------------------------------
T ss_pred CEEEEEeCCHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHhcC-----------------------------------
Confidence 5789999999999999999987 899865 677777655444432
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
.+.++++|...+.. +..++++..+... .++++.+...... +....+.
T Consensus 48 ---------------------------~pDlvllDi~mP~~-dG~e~~~~ir~~~---~~pIi~lTa~~~~--~~~~~al 94 (190)
T d1s8na_ 48 ---------------------------KPDLVIMDVKMPRR-DGIDAASEIASKR---IAPIVVLTAFSQR--DLVERAR 94 (190)
T ss_dssp ---------------------------CCSEEEEESSCSSS-CHHHHHHHHHHTT---CSCEEEEEEGGGH--HHHHTTG
T ss_pred ---------------------------CCCEEEEeccccCc-chHHHHHHHHhcC---CCCEEEEeCCCCH--HHHHHHH
Confidence 13566677665433 3345555555432 3456655543322 3334567
Q ss_pred cCccccccccCCCcchHHHHHhh
Q 001330 868 LPICDHVISRPFHGSRLIEVLKL 890 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~ 890 (1099)
..|.+.++.||+....|...+..
T Consensus 95 ~~Ga~~yl~KP~~~~~L~~~i~~ 117 (190)
T d1s8na_ 95 DAGAMAYLVKPFSISDLIPAIEL 117 (190)
T ss_dssp GGSCEEEEEESCCHHHHHHHHHH
T ss_pred HcCCCEeccCCCCHHHHHHHHHH
Confidence 78999999999999999888754
No 82
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}
Probab=89.09 E-value=0.73 Score=41.11 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=69.6
Q ss_pred CeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCCc
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGHH 788 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 788 (1099)
-+++++++++..+..++.+++. .|+.+..+.+....... +.
T Consensus 3 ~rILvVdDd~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~---l~----------------------------------- 43 (118)
T d2b4aa1 3 FRVTLVEDEPSHATLIQYHLNQ-LGAEVTVHPSGSAFFQH---RS----------------------------------- 43 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHT---GG-----------------------------------
T ss_pred CEEEEEECCHHHHHHHHHHHHh-cCCCeEEECCHHHHHHH---HH-----------------------------------
Confidence 4688999999999999999998 89999998887643221 10
Q ss_pred ccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccccc
Q 001330 789 DVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLL 868 (1099)
Q Consensus 789 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 868 (1099)
....+.++++|....... ..+.++.++...+. .+++.+...... ......
T Consensus 44 -----------------------~~~~~dliilD~~lp~~~-G~el~~~ir~~~~~--~pii~lt~~~~~----~~~~~~ 93 (118)
T d2b4aa1 44 -----------------------QLSTCDLLIVSDQLVDLS-IFSLLDIVKEQTKQ--PSVLILTTGRHE----LIESSE 93 (118)
T ss_dssp -----------------------GGGSCSEEEEETTCTTSC-HHHHHHHHTTSSSC--CEEEEEESCC------CCCCSS
T ss_pred -----------------------hcCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCC--CcEEEEECCccH----HHHHhh
Confidence 011256777887765432 33455555554433 345554432211 111222
Q ss_pred CccccccccCCCcchHHHHHhh
Q 001330 869 PICDHVISRPFHGSRLIEVLKL 890 (1099)
Q Consensus 869 ~~~~~~~~kP~~~~~L~~~l~~ 890 (1099)
.+. .++.||+....|...++.
T Consensus 94 ~~~-dyl~KP~~~~eL~~~i~~ 114 (118)
T d2b4aa1 94 HNL-SYLQKPFAISELRAAIDY 114 (118)
T ss_dssp SCE-EEEESSCCHHHHHHHHHH
T ss_pred cCC-CEEECCCCHHHHHHHHHH
Confidence 333 589999999999877764
No 83
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}
Probab=88.26 E-value=0.78 Score=41.99 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=72.2
Q ss_pred CeEEEEecChHHHHHHHHHhhhccC-ceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCCC
Q 001330 709 SQMILFIAGEERRRVLKRYIENSLN-IKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTGH 787 (1099)
Q Consensus 709 ~~v~l~~~~~~~~~~l~~~l~~~~g-~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 787 (1099)
-+|+++++++..+..++.+++...+ ..+..+.+.+...+.+++.
T Consensus 3 i~VLiVDD~~~~r~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~----------------------------------- 47 (138)
T d1a04a2 3 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL----------------------------------- 47 (138)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHH-----------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhc-----------------------------------
Confidence 3688899999999999999987333 3345566665544433322
Q ss_pred cccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccc
Q 001330 788 HDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRL 867 (1099)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 867 (1099)
.+.++++|...+.. +..+.++.++...+.. +++.+..... ........
T Consensus 48 ---------------------------~~DlvllD~~mP~~-~G~el~~~ir~~~~~~--~vivlt~~~~--~~~~~~a~ 95 (138)
T d1a04a2 48 ---------------------------DPDLILLDLNMPGM-NGLETLDKLREKSLSG--RIVVFSVSNH--EEDVVTAL 95 (138)
T ss_dssp ---------------------------CCSEEEEETTSTTS-CHHHHHHHHHHSCCCS--EEEEEECCCC--HHHHHHHH
T ss_pred ---------------------------CCCEEEEecCCCCC-CHHHHHHHHHhhCCCC--CEEEEEEECC--HHHHHHHH
Confidence 13456666665432 3445555565554443 3444333221 12223456
Q ss_pred cCccccccccCCCcchHHHHHhhc
Q 001330 868 LPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 868 ~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
..|.+.++.||+....|.+.++..
T Consensus 96 ~~Ga~~yl~Kp~~~~~L~~~i~~v 119 (138)
T d1a04a2 96 KRGADGYLLKDMEPEDLLKALHQA 119 (138)
T ss_dssp HTTCSEEEETTCCHHHHHHHHHHH
T ss_pred HcCCCEEEECCCCHHHHHHHHHHH
Confidence 689999999999999999998754
No 84
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]}
Probab=87.91 E-value=0.31 Score=48.79 Aligned_cols=50 Identities=20% Similarity=0.332 Sum_probs=34.5
Q ss_pred EEEEeCCCCCCccc--------Hhhhccccccccc----cCCCCCCCccccHHHHHHHHHhc
Q 001330 592 FEVDDTGKGIPKDK--------QNSIFEEFVQVKE----TALGHQEGLGLGLGIVQSMVHLM 641 (1099)
Q Consensus 592 i~V~DtG~GI~~e~--------l~~IFe~F~q~d~----s~~~~~~GtGLGLaIvk~lVe~~ 641 (1099)
|+|.|+|.|||-+. .+-||-......+ .-.-.+|..|+|++.|--+-+.+
T Consensus 68 IsV~ddGrGIPv~~h~~~~~~~~e~if~~l~tg~~fd~~~~~~sgG~nGvG~~~~NalS~~f 129 (219)
T d1ei1a2 68 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL 129 (219)
T ss_dssp EEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEE
T ss_pred EEEEECCccccccccCccCCchhhhhhhhhhhccCCCCCcceeEcCccccceeEEEEeeeEE
Confidence 89999999999875 5566665433221 11122356799999998887766
No 85
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=87.43 E-value=5.1 Score=37.78 Aligned_cols=119 Identities=12% Similarity=0.061 Sum_probs=76.7
Q ss_pred CEEEEE----eCCHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC--CHH
Q 001330 963 KKFLVV----EDDAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM--NGW 1033 (1099)
Q Consensus 963 ~~ILvV----dDd~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m--dG~ 1033 (1099)
.|||++ |-+..=..++...|+..||+|... ...++.++.+.+ ..+|+|.+-..|... .--
T Consensus 38 pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~~~~e~iv~aa~~-----------~~advI~iSs~~~~~~~~~~ 106 (168)
T d7reqa2 38 PRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVE-----------ADVHVVGVSSLAGGHLTLVP 106 (168)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTTBCHHHHHHHHHH-----------HTCSEEEEEECSSCHHHHHH
T ss_pred CeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCCCcCcHHHHHHHHHc-----------cCCCEEEEecCcccchHHHH
Confidence 478877 556777788899999999999874 577888887754 268999998766432 122
Q ss_pred HHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHHh
Q 001330 1034 EATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ-KDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1034 e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~-~~~L~~~l~~i~~~~ 1096 (1099)
++++.+|+.. ..++|| ++-+.-..++.....+.|+++....=-. .+.....++++..++
T Consensus 107 ~l~~~L~~~g---~~~v~V-ivGG~ip~~d~~~l~~~Gv~~iF~pgt~~~e~a~~~~~~~~~~~ 166 (168)
T d7reqa2 107 ALRKELDKLG---RPDILI-TVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRASL 166 (168)
T ss_dssp HHHHHHHHTT---CTTSEE-EEEESCCGGGHHHHHHHTEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC---CCCeEE-EEeCCCCHHHHHHHHhCCCCEEECcCCCHHHHHHHHHHHHHHHh
Confidence 3445555432 234444 4555556677788889999986542222 244455555554444
No 86
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=87.34 E-value=0.76 Score=43.02 Aligned_cols=116 Identities=13% Similarity=0.106 Sum_probs=72.1
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
.|.+|+++++++..+..+..++.. .|..+... .......+.
T Consensus 12 ~~~rILiVDD~~~~~~~l~~~L~~-~g~~v~~~--~~~~~~~~~------------------------------------ 52 (153)
T d1w25a2 12 LGGRVLIVDDNERQAQRVAAELGV-EHRPVIES--DPEKAKISA------------------------------------ 52 (153)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTT-TSEEEEEC--CHHHHHHHH------------------------------------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHH-CCCEEEEc--cHHHHHHHh------------------------------------
Confidence 567899999999999999999987 67766332 222111110
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
...+.++++|...+.. +..++++.++........+++.+..... .......
T Consensus 53 --------------------------~~~~DlillD~~mP~~-dG~el~~~ir~~~~~~~iPiI~lt~~~~--~~~~~~a 103 (153)
T d1w25a2 53 --------------------------GGPVDLVIVNAAAKNF-DGLRFTAALRSEERTRQLPVLAMVDPDD--RGRMVKA 103 (153)
T ss_dssp --------------------------HSSCSEEEEETTCSSS-CHHHHHHHHHTSGGGTTCCEEEEECTTC--HHHHHHH
T ss_pred --------------------------cCCCCEEEEECccccc-cchHHHHHHHhccccccceeEEeecCCC--HHHHHHH
Confidence 1124567777766543 3345555555443333455665554322 2233455
Q ss_pred ccCccccccccCCCcchHHHHHhh
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKL 890 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~ 890 (1099)
...|++.++.||+....|...++.
T Consensus 104 ~~~Ga~d~l~KP~~~~~L~~~i~~ 127 (153)
T d1w25a2 104 LEIGVNDILSRPIDPQELSARVKT 127 (153)
T ss_dssp HHTTCCEEEESSCCHHHHHHHHHH
T ss_pred HhcCcceEEECCCCHHHHHHHHHH
Confidence 668999999999999988877754
No 87
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=86.71 E-value=0.54 Score=46.73 Aligned_cols=51 Identities=22% Similarity=0.353 Sum_probs=34.3
Q ss_pred EEEEeCCCCCCcccH--------hhhccccccccc----cCCCCCCCccccHHHHHHHHHhcC
Q 001330 592 FEVDDTGKGIPKDKQ--------NSIFEEFVQVKE----TALGHQEGLGLGLGIVQSMVHLMK 642 (1099)
Q Consensus 592 i~V~DtG~GI~~e~l--------~~IFe~F~q~d~----s~~~~~~GtGLGLaIvk~lVe~~g 642 (1099)
|+|.|+|.|||-+.. +-||--.....+ .-....|..|+|++.|--+-+.+-
T Consensus 60 i~V~ddG~GIpv~~h~~~~~~~~e~if~~l~~~~~~d~~~~~~sgG~hGvGa~vvNalS~~~~ 122 (212)
T d1kija2 60 LTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTV 122 (212)
T ss_dssp EEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEE
T ss_pred EEEEECCcccccccccccCcceEEEEEEEEcccccccCCCceecCCCccccceEEEEeccceE
Confidence 899999999998763 345554433221 112234678999999988887663
No 88
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}
Probab=85.02 E-value=0.85 Score=40.72 Aligned_cols=71 Identities=21% Similarity=0.235 Sum_probs=42.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhcccccccccccCccccccccCCCcchHHHHHhhc
Q 001330 816 FTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYRLLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 816 ~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
+.++++|...+... ....+...+...+.. +++.+.... ..+........|.+.++.||+....|...++.+
T Consensus 44 ~dlillD~~mP~~~-G~~~~~~lr~~~~~~--~ii~it~~~--~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~ 114 (120)
T d1p2fa2 44 FHVVVLDVMLPDYS-GYEICRMIKETRPET--WVILLTLLS--DDESVLKGFEAGADDYVTKPFNPEILLARVKRF 114 (120)
T ss_dssp CSEEEEESBCSSSB-HHHHHHHHHHHCTTS--EEEEEESCC--SHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred CCEEEEeCcccccc-hhHHHHHHhhcCCCC--cEEEEecCC--CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 45677777655432 234445555444433 344433222 122333556688999999999999998887654
No 89
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=77.71 E-value=2.8 Score=39.84 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=72.9
Q ss_pred CCCeEEEEecChHHHHHHHHHhhhccCceEEEecchhhHHHHHHHHhccCCCCCcccCCCCCcccccccccccCCCCCCC
Q 001330 707 EGSQMILFIAGEERRRVLKRYIENSLNIKVTIVKQEKNLHQELRKVKRKMDPSSIGYAEKPESSLVDSLTMSASSSSDTG 786 (1099)
Q Consensus 707 ~g~~v~l~~~~~~~~~~l~~~l~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 786 (1099)
.+.+|+++++++..++.+...+.. +|..+..+.+....
T Consensus 10 ~~~~iLvvdd~~~~~~~l~~~L~~-~G~~v~~~~~~~~a----------------------------------------- 47 (189)
T d1qo0d_ 10 RELQVLVLNPPGEVSDALVLQLIR-IGCSVRQCWPPPEA----------------------------------------- 47 (189)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHH-HTCEEEEECSCCSS-----------------------------------------
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHH-cCCcceecCCHHHh-----------------------------------------
Confidence 567899999999999999999998 78888776443210
Q ss_pred CcccccccccCcCCCCcccccccccccCcceEEEEcCCCCChHHHHHHHHhccccCCCCcceEEEeccchhccccccccc
Q 001330 787 HHDVALDIKDDYDNVSPHSKKASSKCLSSFTLVVIDATAGSVSELVKILANFKRDVPSLSCKVVWIDNSVIRNAHSREYR 866 (1099)
Q Consensus 787 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 866 (1099)
....+.++++|...+. ..... +...+...|. ++++.+..... .......
T Consensus 48 -------------------------l~~~~Dlvl~D~~mp~-~~~~~-~~~~~~~~p~--~pvI~lta~~~--~~~~~~a 96 (189)
T d1qo0d_ 48 -------------------------FDVPVDVVFTSIFQNR-HHDEI-AALLAAGTPR--TTLVALVEYES--PAVLSQI 96 (189)
T ss_dssp -------------------------CSSCCSEEEEECCSST-HHHHH-HHHHHHSCTT--CEEEEEECCCS--HHHHHHH
T ss_pred -------------------------ccCCCCEEEEcCCCCC-cHHHH-HHHHHHcCCC--CCEEEEeccch--HHHHHHH
Confidence 0123567888876543 33332 2333333333 45555544322 1223345
Q ss_pred ccCccccccccCCCcchHHHHHhhc
Q 001330 867 LLPICDHVISRPFHGSRLIEVLKLL 891 (1099)
Q Consensus 867 ~~~~~~~~~~kP~~~~~L~~~l~~l 891 (1099)
...|...++.||+...+|...+...
T Consensus 97 l~~Ga~~yL~KP~~~~~L~~~i~~~ 121 (189)
T d1qo0d_ 97 IELECHGVITQPLDAHRVLPVLVSA 121 (189)
T ss_dssp HHHTCSEEEESSCCGGGHHHHHHHH
T ss_pred HHcCCcEEEEecchhhHHHHHHhhc
Confidence 6678899999999999999988643
No 90
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=75.99 E-value=1.2 Score=42.28 Aligned_cols=46 Identities=22% Similarity=0.360 Sum_probs=33.5
Q ss_pred EEEEeCCCCCCcccHhhhccccccccccCCCCCCCccccHHHHHHHHHhcCCEEEEEecCC
Q 001330 592 FEVDDTGKGIPKDKQNSIFEEFVQVKETALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEP 652 (1099)
Q Consensus 592 i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~ 652 (1099)
++|.|+|.|||-+..+ ..+..++.+..+.+.|.++-=.+.|+....
T Consensus 39 i~V~D~GRGIPvd~h~---------------~~~~~~~e~v~t~SVVNALS~~l~v~v~Rd 84 (168)
T d1s14a_ 39 LEVIDDGRGMPVDIHP---------------EEGVPAVELILCISVVNALSKRVEVNVRRD 84 (168)
T ss_dssp EEEEECSSCCCCSBCT---------------TTCSBHHHHHHHTSHHHHHEEEEEEEEEET
T ss_pred EEEEEEecccceeeec---------------cCCCchhhccCceeEeeeccCeEEEEEEEC
Confidence 8999999999964311 235677888887888888877777765543
No 91
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.66 E-value=1.3 Score=43.73 Aligned_cols=59 Identities=14% Similarity=0.227 Sum_probs=34.2
Q ss_pred EEEEEeCCCCCCcccHhhhccccccccc----------cCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCC
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKE----------TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~----------s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~g 653 (1099)
.+.|.|||+||+++++.+-+-.+.+... ......|-.|+|+.=|-- -..++.|.++..+
T Consensus 72 ~l~I~DnGiGMt~~el~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGVGFyS~Fm----Vad~v~V~sk~~~ 140 (208)
T d1uyla_ 72 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL----VAEKVTVITKHND 140 (208)
T ss_dssp EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECTT
T ss_pred EEEEEcCCccccHHHHHhhcccccccchHHHHHhhhhccchhhhhhcccceEEeee----ccCceEEEEecCC
Confidence 5889999999999987654443322211 011122567888875543 3345666655433
No 92
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=71.98 E-value=1.7 Score=42.88 Aligned_cols=59 Identities=14% Similarity=0.252 Sum_probs=34.3
Q ss_pred EEEEEeCCCCCCcccHhhhccccccccc----------cCCCCCCCccccHHHHHHHHHhcCCEEEEEecCCC
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEEFVQVKE----------TALGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPG 653 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~----------s~~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~g 653 (1099)
.+.|.|||+||+++++.+-+-...+... ....--|-.|+|+.=|--+.+ ++.|.++..+
T Consensus 73 ~l~i~DnGiGMt~~~~~~~l~~ia~S~~~~~~~~~~~~~~~~~IGqFGIGfyS~Fmvad----~v~V~trs~~ 141 (213)
T d2iwxa1 73 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVAD----RVQVISKSND 141 (213)
T ss_dssp EEEEEECSSCCCHHHHHHHHTTCCCSTHHHHHHHHHHTCCGGGGGGGTCGGGGGGGTEE----EEEEEEECTT
T ss_pred eeEEecCCccccHHHHHHHHhhhhcccchHHHhhhhhhhhhhhhcccccchhhhhhhcc----ceeEEeecCC
Confidence 4899999999999987765544332110 011123567888865544333 4566555443
No 93
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]}
Probab=70.60 E-value=1.6 Score=43.58 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCCcccHhhhccc----cccccccC-----------CCCCCCccccHHHHHHHHHhcCCEEEEEecCCCc
Q 001330 591 EFEVDDTGKGIPKDKQNSIFEE----FVQVKETA-----------LGHQEGLGLGLGIVQSMVHLMKGEIAIADKEPGE 654 (1099)
Q Consensus 591 ~i~V~DtG~GI~~e~l~~IFe~----F~q~d~s~-----------~~~~~GtGLGLaIvk~lVe~~gG~I~v~s~~~gg 654 (1099)
.+.|.|||+||+++++.+-+-. +.+.-... ..--|..|+|+.=|--+.+ +|.|.++..++
T Consensus 71 ~l~i~DnGiGMt~~e~~~~lgtIa~Sgt~~f~~~~~~~~~~~~~~~~~IGqFGvGfyS~FmVad----~V~v~s~~~~~ 145 (227)
T d2gqpa1 71 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVAD----KVIVTSKHNND 145 (227)
T ss_dssp EEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEE----EEEEEEECTTS
T ss_pred EEEEEecCccccHHHHHHHHHHHhhcchHHHHHhhhhcccccccchhhhhhcCcceeEEEeeee----eEEEEEeccCC
Confidence 5889999999999987654432 22211000 0001357888887766554 45665555443
No 94
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=69.59 E-value=5.3 Score=36.10 Aligned_cols=39 Identities=8% Similarity=0.067 Sum_probs=28.7
Q ss_pred eEEEEecChHHHHHHHHHhhhccC--ceEEEecchhhHHHHH
Q 001330 710 QMILFIAGEERRRVLKRYIENSLN--IKVTIVKQEKNLHQEL 749 (1099)
Q Consensus 710 ~v~l~~~~~~~~~~l~~~l~~~~g--~~v~~~~~~~~~~~~l 749 (1099)
+|+++++++..+..++.+++. .| ..+..+.++....+.+
T Consensus 5 rVLiVDD~~~~r~~l~~~L~~-~g~~~~v~~a~~g~~al~~~ 45 (140)
T d1a2oa1 5 RVLSVDDSALMRQIMTEIINS-HSDMEMVATAPDPLVARDLI 45 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHT-STTEEEEEEESSHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHh-CCCeEEEEEECCHHHHHHHH
Confidence 688999999999999999988 55 3455566666544443
No 95
>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=65.66 E-value=29 Score=31.91 Aligned_cols=112 Identities=9% Similarity=0.060 Sum_probs=74.6
Q ss_pred eCCHHHHHHHHHHHhhcC---------CeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH-H--
Q 001330 969 EDDAIVLKVTSAVLGKLG---------AKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG-W-- 1033 (1099)
Q Consensus 969 dDd~~~~~~l~~~L~~~G---------~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG-~-- 1033 (1099)
|-+..=.+++..+|+..| |+|.-. ...++.++.+.+ ..+|+|-+-..|....+ .
T Consensus 30 D~HdiG~~iv~~~l~~~G~~~~~~~~~~eVi~LG~~vp~e~~v~~a~e-----------~~~d~VglS~l~t~~~~h~~~ 98 (160)
T d1xrsb1 30 DAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVE-----------LEADVLLVSQTVTQKNVHIQN 98 (160)
T ss_dssp CCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHH-----------TTCSEEEEECCCCTTSHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCcccccccceEEEeCCCCCCHHHHHHHHHh-----------cCCCEEEEeecccccchhHHH
Confidence 445566778889999999 777643 466777777753 47999999999886544 2
Q ss_pred --HHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHh
Q 001330 1034 --EATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1034 --e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~~i~~~~ 1096 (1099)
++++.+|+... ..++||+ +-+..... ..+.+.|+|.|...=-+..++.+.+...++.+
T Consensus 99 ~~~~i~~l~~~g~--~d~v~vi-vGG~~~~~--~~a~~~GaD~~f~~g~~a~~~a~~l~~~l~~r 158 (160)
T d1xrsb1 99 MTHLIELLEAEGL--RDRFVLL-CGGPRINN--EIAKELGYDAGFGPGRFADDVATFAVKTLNDR 158 (160)
T ss_dssp HHHHHHHHHHTTC--GGGSEEE-EECTTCCH--HHHHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCceEEE-EcCCCCCH--HHHHHcCCCEEcCCCCCHHHHHHHHHHHHHHh
Confidence 45566665321 1124444 44433322 34668899999887778888888887766654
No 96
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=58.31 E-value=27 Score=32.05 Aligned_cols=99 Identities=10% Similarity=0.133 Sum_probs=62.9
Q ss_pred EEEEE----eCCHHHHHHHHHHHhhcCCeEEEE---CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCC-CCH-HH
Q 001330 964 KFLVV----EDDAIVLKVTSAVLGKLGAKFEVC---RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPV-MNG-WE 1034 (1099)
Q Consensus 964 ~ILvV----dDd~~~~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~-mdG-~e 1034 (1099)
+|++. |-+.+=..++..+|+..||+|... ...++.++.+.+ ..||+|.+-..|+. |.. -+
T Consensus 8 kivi~tv~gD~HdiG~~iv~~~l~~~G~~Vi~LG~~~p~e~~~~~~~~-----------~~~d~i~lS~l~~~~~~~~~~ 76 (156)
T d3bula2 8 KMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKE-----------VNADLIGLSGLITPSLDEMVN 76 (156)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHH-----------HTCSEEEEECCSTHHHHHHHH
T ss_pred EEEEEeeCCChhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh-----------hCCCEEEEecccccchHHHHH
Confidence 55554 445666788899999999999864 456677777754 36999999999874 222 24
Q ss_pred HHHHHhccccccCCCccEEEEeccCCHHHHHHHHH---cCCCEEEe
Q 001330 1035 ATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVD---AGMDFHLT 1077 (1099)
Q Consensus 1035 ~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~---aG~ddyL~ 1077 (1099)
+++.+|+. +.++||++--+....+....... .|++.|-.
T Consensus 77 ~~~~l~~~----g~~~~vivGG~~~~~~~~~~~~~~~y~gad~ya~ 118 (156)
T d3bula2 77 VAKEMERQ----GFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQ 118 (156)
T ss_dssp HHHHHHHT----TCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECC
T ss_pred HHHHHHhc----cccceEEEecccccchHHHhhhccccccceeecc
Confidence 44555543 44677776555555544333221 47776543
No 97
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}
Probab=57.87 E-value=30 Score=33.01 Aligned_cols=90 Identities=22% Similarity=0.235 Sum_probs=65.2
Q ss_pred eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC-------CHHHHHHHHhccccccCCCccEEEEeccCC
Q 001330 988 KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM-------NGWEATRLIRKEEEQYDVHIPIIALTAHAM 1060 (1099)
Q Consensus 988 ~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m-------dG~e~~r~IR~~~~~~~~~ipIIalTa~~~ 1060 (1099)
-...+.+.+++...... .+|.|++.--.|.. -|++.++++.+. ..+||+++-+- +
T Consensus 102 ig~s~h~~~e~~~a~~~------------g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~-----~~~Pv~AiGGI-~ 163 (206)
T d1xi3a_ 102 IGASVYSLEEALEAEKK------------GADYLGAGSVFPTKTKEDARVIGLEGLRKIVES-----VKIPVVAIGGI-N 163 (206)
T ss_dssp EEEEESSHHHHHHHHHH------------TCSEEEEECSSCC----CCCCCHHHHHHHHHHH-----CSSCEEEESSC-C
T ss_pred cccccCCHHHHHHHHhc------------CCCEEEeccccccccccccccccHHHHHHHHHh-----cCCCEEEECCC-C
Confidence 34567788887665532 58999988765432 288998888753 35899999885 4
Q ss_pred HHHHHHHHHcCCCEE-----EeCCCCHHHHHHHHHHHHHH
Q 001330 1061 AGVASKIVDAGMDFH-----LTKPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1061 ~~~~~~~l~aG~ddy-----L~KPi~~~~L~~~l~~i~~~ 1095 (1099)
.+...+++++|++++ |..--++.+....++++++.
T Consensus 164 ~~ni~~~~~~Ga~gvAvis~I~~~~dp~~~~~~l~~~~~~ 203 (206)
T d1xi3a_ 164 KDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVEE 203 (206)
T ss_dssp TTTHHHHHTTTCSEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEhHHHHCCCCHHHHHHHHHHHHHH
Confidence 556788999999998 66666777777777776654
No 98
>d3by8a1 d.110.6.1 (A:46-178) Fumarate sensor DcuS {Escherichia coli [TaxId: 562]}
Probab=56.05 E-value=8.6 Score=34.46 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=34.2
Q ss_pred hhhHhhhcCCCCcccccccccccccceeeeeeee---CCC--ceEEeccchHHHHHHhh
Q 001330 177 SWFQEVINSTNGYSSLVTGLNKEEGSIFLHTFAM---DGT--GFISLGFPAKVVIDLFA 230 (1099)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~i~~~~~~~~~~~~~~ 230 (1099)
.+|++++.+. .+.+++.+-. .+-+..++|| +|+ |+|++|+.++.|.+.++
T Consensus 78 ~~~~~Al~G~-~~~~~~~gt~---g~~~~~~~Pv~~~~G~viGvV~Vg~~~~~ie~~l~ 132 (133)
T d3by8a1 78 DDILKALNGE-ENVAINRGFL---AQALRVFTPIYDENHKQIGVVAIGLELSRVTQQIN 132 (133)
T ss_dssp GGGTGGGGTC-CEEEEECSSS---SCEEEEEEEEECTTSCEEEEEEEEEEHHHHHHHHH
T ss_pred CchhHHhCCC-ceEEEEEecC---ceEEEEEEeeECCCCcEEEEEEEEEEHHHHHHHhh
Confidence 3578899843 4555544422 2335566775 466 99999999999988775
No 99
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.15 E-value=2.3 Score=36.87 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=47.3
Q ss_pred CCCCCEEEEEeCCH-HHHHHHHHHHhhcCCeEEEE--CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHH
Q 001330 959 PLNGKKFLVVEDDA-IVLKVTSAVLGKLGAKFEVC--RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEA 1035 (1099)
Q Consensus 959 ~~~~~~ILvVdDd~-~~~~~l~~~L~~~G~~v~~a--~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~ 1035 (1099)
|+.++|||++-|.. ..++.-..+|...|+.++.. ....+. ......+|+|+.|-.||. +.
T Consensus 2 pF~~l~vl~vs~~~~~F~e~Ws~IL~~~Ga~vV~~~~~~~~~s-------------d~~~~~~DVvvTD~scp~----~v 64 (106)
T d1kzyc2 2 PFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNK-------------DIALGVFDVVVTDPSCPA----SV 64 (106)
T ss_dssp TTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCC-------------CSCGGGCSEEEECTTCCH----HH
T ss_pred CCcceEEEEEecccccHHHHHHHHHHhCCceEeeccccchhhc-------------cCccccccEEEeCCCCCH----HH
Confidence 46788999999855 46888899999999876543 111110 012346999999999885 34
Q ss_pred HHHHhccccccCCCccEE
Q 001330 1036 TRLIRKEEEQYDVHIPII 1053 (1099)
Q Consensus 1036 ~r~IR~~~~~~~~~ipII 1053 (1099)
.+..... .+|+|
T Consensus 65 l~~a~~~------~ipvV 76 (106)
T d1kzyc2 65 LKCAEAL------QLPVV 76 (106)
T ss_dssp HHHHHHH------TCCEE
T ss_pred HHHHHHc------CCcEe
Confidence 4444332 47876
No 100
>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=49.38 E-value=14 Score=34.34 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=62.2
Q ss_pred HHHHHHHHhhcCCeEEEE--CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC--HHHHHHHHhccccccCCCc
Q 001330 975 LKVTSAVLGKLGAKFEVC--RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN--GWEATRLIRKEEEQYDVHI 1050 (1099)
Q Consensus 975 ~~~l~~~L~~~G~~v~~a--~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md--G~e~~r~IR~~~~~~~~~i 1050 (1099)
......+|+..||++... .+..++.+.+.+. ..|+|.+.-.+.... +-++++.||+.. .+
T Consensus 53 a~f~~n~f~~gGfev~~~~~~~~~e~v~aa~~~-----------~a~vvvicssd~~y~~~~~~~~~aLk~ag----~~- 116 (163)
T d7reqb2 53 EGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKS-----------GAQVADLCSSAKVYAQQGLEVAKALKAAG----AK- 116 (163)
T ss_dssp HHHHHHHHHHTTCBCCEEESCCHHHHHHHHHHH-----------TCSEEEEECCHHHHHHHHHHHHHHHHHTT----CS-
T ss_pred HHHHHHHHHccCeeeccCCCCCcHHHHHHHHhC-----------CCCEEEEecCccchHHHHHHHHHHHHhcc----cc-
Confidence 456888999999987542 3556666666432 578777765433221 225778888642 22
Q ss_pred cEEEEecc-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 001330 1051 PIIALTAH-AMAGVASKIVDAGMDFHLTKPLQKDKLLDVVK 1090 (1099)
Q Consensus 1051 pIIalTa~-~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l~ 1090 (1099)
++++.+. ...++.....++|+|+|+.--.+.-+..+.+.
T Consensus 117 -~~vlaGg~~~~~d~~~l~~aGVd~~i~~G~d~~~~l~~l~ 156 (163)
T d7reqb2 117 -ALYLSGAFKEFGDDAAEAEKLIDGRLFMGMDVVDTLSSTL 156 (163)
T ss_dssp -EEEEESCGGGGGGGHHHHHHHCCEEECTTCCHHHHHHHHH
T ss_pred -eeEEEecCCCcccHHHHHhCCCCeEecCCCcHHHHHHHHH
Confidence 3334433 44556677889999999987776555554443
No 101
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}
Probab=48.92 E-value=40 Score=33.02 Aligned_cols=98 Identities=16% Similarity=0.032 Sum_probs=66.9
Q ss_pred HHHHHhhcCCeEEE--ECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH-----HHHHHHHhccccccCCCc
Q 001330 978 TSAVLGKLGAKFEV--CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG-----WEATRLIRKEEEQYDVHI 1050 (1099)
Q Consensus 978 l~~~L~~~G~~v~~--a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG-----~e~~r~IR~~~~~~~~~i 1050 (1099)
..+.|-+.||.|.. -.|..-|-++.+ . . -..+|=+-.|..+| -+.++.|++. ..+
T Consensus 117 Aae~Lv~eGF~VlpY~~~D~v~ak~Le~-~-----------G-c~avMPlgsPIGSg~Gl~n~~~l~~i~~~-----~~v 178 (251)
T d1xm3a_ 117 ASEQLLEEGFIVLPYTSDDVVLARKLEE-L-----------G-VHAIMPGASPIGSGQGILNPLNLSFIIEQ-----AKV 178 (251)
T ss_dssp HHHHHHHTTCCEEEEECSCHHHHHHHHH-H-----------T-CSCBEECSSSTTCCCCCSCHHHHHHHHHH-----CSS
T ss_pred HHHHHHhCCcEEEEecCCCHHHHHHHHH-c-----------C-ChhHHHhhhhhhcCCCcCChHHHHHHHhc-----CCc
Confidence 34555567999864 355555433331 1 1 13577777786655 4567888864 358
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHH
Q 001330 1051 PIIALTAHAMAGVASKIVDAGMDFHLT-----KPLQKDKLLDVVKSID 1093 (1099)
Q Consensus 1051 pIIalTa~~~~~~~~~~l~aG~ddyL~-----KPi~~~~L~~~l~~i~ 1093 (1099)
|||+=.+-..+.+...+++.|+|+.|. +--++-.+.++.+...
T Consensus 179 PvIvDAGIG~pSdAa~AMElG~daVLvNTAIA~a~dPv~MA~A~~~Av 226 (251)
T d1xm3a_ 179 PVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAV 226 (251)
T ss_dssp CBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred cEEEecCCCCHHHHHHHHHccCCEEEechhhhcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999975 4556666666665443
No 102
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]}
Probab=47.94 E-value=77 Score=31.98 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=52.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHH
Q 001330 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ-KDKLLDVVKSI 1092 (1099)
Q Consensus 1016 ~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~-~~~L~~~l~~i 1092 (1099)
..||.|++|++=-..|--++...|+.........++.++=....+...+.+++++|+++.+.-=++ .++..+.++..
T Consensus 61 ~g~D~v~iD~EHg~~~~~~~~~~i~a~~~~~~~~~~~iVRvp~~~~~~I~~~LD~Ga~GIivP~V~s~eea~~~v~~~ 138 (299)
T d1izca_ 61 TKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETVEEVREFVKEM 138 (299)
T ss_dssp TCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEeCCCCChHHHHHHHHhCcCeeeccccccHHHHHHHHHhh
Confidence 379999999998778877776666654221112233344445667888999999999998874444 66666666543
No 103
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=41.68 E-value=13 Score=38.07 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=45.7
Q ss_pred HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEE------EeC-CCCHHHHHHHHHHHHHHh
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFH------LTK-PLQKDKLLDVVKSIDETM 1096 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddy------L~K-Pi~~~~L~~~l~~i~~~~ 1096 (1099)
++.++++|+.. +.+|||+..+-.+.++..+++.+||+.. +.+ |--..++.+-|+++++..
T Consensus 243 l~~v~~~~~~~----~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~G~~~i~~i~~~L~~~m~~~ 309 (312)
T d1gtea2 243 LRAVTTIARAL----PGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLK 309 (312)
T ss_dssp HHHHHHHHHHS----TTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc----CCCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhccChHHHHHHHHHHHHHHHHc
Confidence 56777777542 3589999999999999999999999984 556 444677777777776643
No 104
>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}
Probab=41.01 E-value=33 Score=31.99 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=50.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCC--eE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHH
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGA--KF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLI 1039 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~--~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~I 1039 (1099)
.+|..||-++.....++.-++..+. .+ ....|..++++.+.. ...+||+|++|-=-...+..+.+..|
T Consensus 65 ~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~---------~~~~fDlIflDPPY~~~~~~~~l~~i 135 (182)
T d2fhpa1 65 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE---------EKLQFDLVLLDPPYAKQEIVSQLEKM 135 (182)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH---------TTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcc---------cCCCcceEEechhhhhhHHHHHHHHH
Confidence 4799999999999999999987774 23 456788888776532 23479999999611134566777777
Q ss_pred hc
Q 001330 1040 RK 1041 (1099)
Q Consensus 1040 R~ 1041 (1099)
-+
T Consensus 136 ~~ 137 (182)
T d2fhpa1 136 LE 137 (182)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 105
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}
Probab=40.24 E-value=59 Score=28.79 Aligned_cols=98 Identities=8% Similarity=-0.085 Sum_probs=56.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECC-HHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKFEVCRN-GKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~-g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
+..+.+||.|+.........+...|+.+....- -.+.++.+ .-...|.++.-..-. ..-..++..+|
T Consensus 26 ~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a-----------~i~~a~~vi~~~~~d-~~n~~~~~~~r 93 (153)
T d1id1a_ 26 GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKA-----------GIDRCRAILALSDND-ADNAFVVLSAK 93 (153)
T ss_dssp TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHH-----------TTTTCSEEEECSSCH-HHHHHHHHHHH
T ss_pred CCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHh-----------ccccCCEEEEccccH-HHHHHHHHHHH
Confidence 356888888876544344444445777765422 22333333 223577777754322 23344555666
Q ss_pred ccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1041 KEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
+. .+.++||+.+. +.+......++|+|..+.
T Consensus 94 ~~----~~~~~iia~~~--~~~~~~~l~~~Gad~vi~ 124 (153)
T d1id1a_ 94 DM----SSDVKTVLAVS--DSKNLNKIKMVHPDIILS 124 (153)
T ss_dssp HH----TSSSCEEEECS--SGGGHHHHHTTCCSEEEC
T ss_pred Hh----CCCCceEEEEc--CHHHHHHHHHCCCCEEEC
Confidence 53 24577887764 345666678899997764
No 106
>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=39.40 E-value=20 Score=33.41 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=49.6
Q ss_pred EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHH
Q 001330 989 FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV 1068 (1099)
Q Consensus 989 v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l 1068 (1099)
.+.+.+-+|+.+.+. ..+|+|++|= |...+=-++++.++... + -.++-.++.-..+...+..
T Consensus 83 ~VEv~s~~q~~~a~~------------~~~diImLDN-~sp~~~k~~v~~~~~~~----~-~i~lEaSGgI~~~ni~~ya 144 (169)
T d1qpoa1 83 EVEVDSLEQLDAVLP------------EKPELILLDN-FAVWQTQTAVQRRDSRA----P-TVMLESSGGLSLQTAATYA 144 (169)
T ss_dssp EEEESSHHHHHHHGG------------GCCSEEEEET-CCHHHHHHHHHHHHHHC----T-TCEEEEESSCCTTTHHHHH
T ss_pred EEEeccHHHhhhhhh------------cCCcEEEecC-cChHhHHHHHHHhhccC----C-eeEEEEeCCCCHHHHHHHH
Confidence 456899999988873 3689999994 43334445555555432 2 2567788988999999999
Q ss_pred HcCCCEE
Q 001330 1069 DAGMDFH 1075 (1099)
Q Consensus 1069 ~aG~ddy 1075 (1099)
..|+|-.
T Consensus 145 ~~GvD~I 151 (169)
T d1qpoa1 145 ETGVDYL 151 (169)
T ss_dssp HTTCSEE
T ss_pred HcCCCEE
Confidence 9999865
No 107
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}
Probab=38.45 E-value=1.4e+02 Score=29.14 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=54.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHH
Q 001330 1016 LPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLTKPLQ-KDKLLDVVK 1090 (1099)
Q Consensus 1016 ~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KPi~-~~~L~~~l~ 1090 (1099)
..||.|++|++=-..|--++...+|.... ..++.++=....+...+.+++++|+++.+.-=++ .++..+.++
T Consensus 36 ~G~Dfv~iD~EHg~~~~~~~~~~i~a~~~---~g~~~~VRvp~~~~~~i~~~LD~Ga~GIivP~v~s~eea~~~v~ 108 (253)
T d1dxea_ 36 AGFDWLVLDGEHAPNDISTFIPQLMALKG---SASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVA 108 (253)
T ss_dssp SCCSEEEEESSSSSCCHHHHHHHHHHTTT---CSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHH
T ss_pred CCCCEEEEecccCCCChhHHHHHHHHHhc---cCCCceecCCCCCHHHHHHHHhcCccEEEecccCCHHHHHHHHH
Confidence 46999999999888888888888887543 2344455566788999999999999999885554 555555544
No 108
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}
Probab=36.46 E-value=30 Score=34.96 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=46.9
Q ss_pred HHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe------CCCCHHHHHHHHHHHHHH
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT------KPLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~------KPi~~~~L~~~l~~i~~~ 1095 (1099)
++.++++++. .++|||+..+-.+.++..+++.+|||.... .|.-..++.+.|..+++.
T Consensus 230 l~~i~~i~~~-----~~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~~P~i~~~I~~~L~~~m~~ 293 (311)
T d1ep3a_ 230 LKLIHQVAQD-----VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQ 293 (311)
T ss_dssp HHHHHHHHTT-----CSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhh-----cceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHcCChHHHHHHHHHHHHHHH
Confidence 6677777753 368999999999999999999999999755 788778887777776654
No 109
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]}
Probab=36.11 E-value=12 Score=33.17 Aligned_cols=83 Identities=16% Similarity=0.248 Sum_probs=50.1
Q ss_pred HHHhcccccccceeEeeccceeeEEEecCCceEEEEecCCCCcceeeccccCccccccccccccCCccccCchhhHhhhc
Q 001330 105 FLALSTIPHLSLVSYLGLDGLSFSYFNDGDQTLAVYSNSSFAANWYTQPVNRDTGMLYGNAIASIPIVSANASWFQEVIN 184 (1099)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 184 (1099)
.+.+.....++.|.+...+|.++|.. + | +.+|+. ..++++|..+..
T Consensus 41 ~~~l~~~~~~~~i~v~D~~G~v~a~~-~----------------~----------~~iG~~-------~~~~~~~~a~~~ 86 (131)
T d1p0za_ 41 IDPMRSFSDATYITVGDASGQRLYHV-N----------------P----------DEIGKS-------MEGGDSDEALIN 86 (131)
T ss_dssp HHHHHHHSCCSEEEEEETTSBEEECS-S----------------G----------GGTTSB-------CCSSCCHHHHHH
T ss_pred HHHHHHHcCCcEEEEECCCCCEEEcc-C----------------h----------hhcCCc-------ccccchHHHHHc
Confidence 45566666777777787888776521 1 1 124543 446677777776
Q ss_pred CCCCcccccccccccccceeeeeeee---CCC--ceEEeccchHHH
Q 001330 185 STNGYSSLVTGLNKEEGSIFLHTFAM---DGT--GFISLGFPAKVV 225 (1099)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~i~~~~~~~~~ 225 (1099)
+. .+.+++.+ ..+.-+...+|| +|+ |+|++||..+.|
T Consensus 87 g~-~~~~~~~g---~~g~~~~~~~PI~~~~G~viGvV~Vg~~l~~i 128 (131)
T d1p0za_ 87 AK-SYVSVRKG---SLGSSLRGKSPIQDATGKVIGIVSVGYTIEQL 128 (131)
T ss_dssp CC-CEEEEEEE---TTEEEEEEEEEEECTTCCEEEEEEEEEEGGGC
T ss_pred CC-cEEEEEec---CCccEEEEEEEEECCCCcEEEEEEEEEEhHHh
Confidence 43 34444443 233346667786 466 999999987754
No 110
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}
Probab=34.18 E-value=1.6e+02 Score=28.46 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=67.8
Q ss_pred HHHHHHhhcCCeEEEE-CCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC-----HHHHHHHHhccccccCCCc
Q 001330 977 VTSAVLGKLGAKFEVC-RNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN-----GWEATRLIRKEEEQYDVHI 1050 (1099)
Q Consensus 977 ~l~~~L~~~G~~v~~a-~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md-----G~e~~r~IR~~~~~~~~~i 1050 (1099)
...+.|-+.||.|... .+-....+.+.+. . --++|-+--|... --..++.|++. ..+
T Consensus 118 ~Aa~~Lv~egF~Vlpy~~~D~v~ak~le~~-----------G-c~~vMplgsPIGsg~Gi~n~~~l~~i~~~-----~~v 180 (243)
T d1wv2a_ 118 KAAEQLVKDGFDVMVYTSDDPIIARQLAEI-----------G-CIAVMPLAGLIGSGLGICNPYNLRIILEE-----AKV 180 (243)
T ss_dssp HHHHHHHTTTCEEEEEECSCHHHHHHHHHS-----------C-CSEEEECSSSTTCCCCCSCHHHHHHHHHH-----CSS
T ss_pred HHHHHhhcCceEEEeccCCCHHHHhHHHHc-----------C-ceeeeecccccccccccccHHHHHhcccc-----CCc
Confidence 3445666779988654 3332333333221 1 1467888888432 23456777753 358
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHHHH
Q 001330 1051 PIIALTAHAMAGVASKIVDAGMDFHL-----TKPLQKDKLLDVVKSIDE 1094 (1099)
Q Consensus 1051 pIIalTa~~~~~~~~~~l~aG~ddyL-----~KPi~~~~L~~~l~~i~~ 1094 (1099)
|+|+=.+-..+++...+++.|+|+.| .|--++..+.++++...+
T Consensus 181 pvivdAGIg~psdaa~AMElG~dgVLvnsaIa~A~dP~~mA~A~~~Av~ 229 (243)
T d1wv2a_ 181 PVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 229 (243)
T ss_dssp CBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred ceEeecccCCHHHHHHHHHccCCEEEechHhhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999996 477788888877765543
No 111
>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}
Probab=33.69 E-value=34 Score=31.54 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=46.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC-CCCHHHHHHHH
Q 001330 962 GKKFLVVEDDAIVLKVTSAVLGKLGAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP-VMNGWEATRLI 1039 (1099)
Q Consensus 962 ~~~ILvVdDd~~~~~~l~~~L~~~G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP-~mdG~e~~r~I 1039 (1099)
+.++..||-|+...+.+++-++..|... ....++...+..... ....||+|++|- | ..+-.+.+..+
T Consensus 63 ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~---------~~~~fD~If~DP--PY~~~~~~~l~~l 131 (171)
T d1ws6a1 63 GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKA---------QGERFTVAFMAP--PYAMDLAALFGEL 131 (171)
T ss_dssp TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHH---------TTCCEEEEEECC--CTTSCTTHHHHHH
T ss_pred cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccc---------cCCccceeEEcc--ccccCHHHHHHHH
Confidence 4567789999999999999999888754 345666655443321 234799999994 3 33434555555
Q ss_pred h
Q 001330 1040 R 1040 (1099)
Q Consensus 1040 R 1040 (1099)
.
T Consensus 132 ~ 132 (171)
T d1ws6a1 132 L 132 (171)
T ss_dssp H
T ss_pred H
Confidence 4
No 112
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=33.22 E-value=1.3e+02 Score=28.45 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=59.2
Q ss_pred CCEEEEEeCCH---HHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCC-CCCCHHHHHH
Q 001330 962 GKKFLVVEDDA---IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEM-PVMNGWEATR 1037 (1099)
Q Consensus 962 ~~~ILvVdDd~---~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~M-P~mdG~e~~r 1037 (1099)
+++|.++.-|. --.+.++.+-+..|..+..+.+..+.-+......... ....+|+||+|--= ...|. +.++
T Consensus 38 g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~vlIDTaGr~~~d~-~~~~ 112 (207)
T d1ls1a2 38 GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA----RLEARDLILVDTAGRLQIDE-PLMG 112 (207)
T ss_dssp TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH----HHHTCCEEEEECCCCSSCCH-HHHH
T ss_pred CCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHH----hhccCcceeecccccchhhh-hhHH
Confidence 45677776653 3445566666777888888866544322211100000 11368999999731 12222 3445
Q ss_pred HHhccccccCCCccEEEEeccCCHHHHHHHH---H-cCCCEEEe
Q 001330 1038 LIRKEEEQYDVHIPIIALTAHAMAGVASKIV---D-AGMDFHLT 1077 (1099)
Q Consensus 1038 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l---~-aG~ddyL~ 1077 (1099)
++++......++-.++++.+....+....+. + .|.++.+.
T Consensus 113 el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~~~~~I~ 156 (207)
T d1ls1a2 113 ELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVL 156 (207)
T ss_dssp HHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCCCCeeEE
Confidence 5544333333444566677766655544432 3 68888653
No 113
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=32.90 E-value=96 Score=29.50 Aligned_cols=110 Identities=11% Similarity=0.072 Sum_probs=63.1
Q ss_pred CCEEEEEeCCH---HHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH--HHHH
Q 001330 962 GKKFLVVEDDA---IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG--WEAT 1036 (1099)
Q Consensus 962 ~~~ILvVdDd~---~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG--~e~~ 1036 (1099)
+++|.+|--|. --.+.++.+-+..|..+..+.++.+..+.+.+..+... ...+|+||+|- |+..- .+..
T Consensus 37 g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a~----~~~~d~ilIDT--aGr~~~d~~~~ 110 (211)
T d2qy9a2 37 GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK----ARNIDVLIADT--AGRLQNKSHLM 110 (211)
T ss_dssp TCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHHH----HTTCSEEEECC--CCCGGGHHHHH
T ss_pred CCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHHH----HcCCCEEEecc--CCCccccHHHH
Confidence 45677665543 23455666667788999988887776555543222111 23689999997 55422 1233
Q ss_pred HHHhccccc------cCCCccEEEEeccCCHHHHHHHH----HcCCCEEEe
Q 001330 1037 RLIRKEEEQ------YDVHIPIIALTAHAMAGVASKIV----DAGMDFHLT 1077 (1099)
Q Consensus 1037 r~IR~~~~~------~~~~ipIIalTa~~~~~~~~~~l----~aG~ddyL~ 1077 (1099)
+++++.... ..+.-+++++.+....++..++. ..|.++.|.
T Consensus 111 ~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lIl 161 (211)
T d2qy9a2 111 EELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITL 161 (211)
T ss_dssp HHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhccCCceEEE
Confidence 333322111 01334677888877766655543 468888654
No 114
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=30.56 E-value=9.9 Score=34.71 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=19.7
Q ss_pred eeccccCcccccccccccc-CCccccCchh
Q 001330 150 YTQPVNRDTGMLYGNAIAS-IPIVSANASW 178 (1099)
Q Consensus 150 ~~~~~~~~~g~~~g~~~~~-~~~~~~~~~~ 178 (1099)
+-|||||+||+.|.+..-. ....+.|++|
T Consensus 45 vLQ~Vn~~tG~~y~~~t~P~~G~lL~n~~Y 74 (162)
T d2bm3a1 45 VLMAVDPETGKEFTSSTFPPGRTVLKNNAY 74 (162)
T ss_dssp TEEEECTTTCCBCCTTCCCCCCSSSCCGGG
T ss_pred HhcccccCCCCccccccCCCCceEeecCCc
Confidence 5699999999999876622 2233445544
No 115
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=29.55 E-value=19 Score=33.59 Aligned_cols=68 Identities=16% Similarity=0.084 Sum_probs=47.6
Q ss_pred EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHH
Q 001330 989 FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIV 1068 (1099)
Q Consensus 989 v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l 1068 (1099)
.+.+.+.+||.+.+. ..+|+|++|= |..-+=-++.+.+|... ++ ..|..++.-..+...+..
T Consensus 82 ~VEv~~~~e~~~a~~------------~g~d~i~LDn-~~pe~~k~~~~~lk~~~----~~-i~lEaSGGI~~~ni~~~a 143 (170)
T d1o4ua1 82 EVEVENLEDALRAVE------------AGADIVMLDN-LSPEEVKDISRRIKDIN----PN-VIVEVSGGITEENVSLYD 143 (170)
T ss_dssp EEEESSHHHHHHHHH------------TTCSEEEEES-CCHHHHHHHHHHHHHHC----TT-SEEEEEECCCTTTGGGGC
T ss_pred EEEeCcHHHHHHHHh------------cCccEEEEcC-cChhhHhHHHHHHHhhC----Cc-EEEEEECCCCHHHHHHHH
Confidence 457899999988874 2589999994 33323334455665432 22 467788888888888888
Q ss_pred HcCCCE
Q 001330 1069 DAGMDF 1074 (1099)
Q Consensus 1069 ~aG~dd 1074 (1099)
+.|+|-
T Consensus 144 ~~GVD~ 149 (170)
T d1o4ua1 144 FETVDV 149 (170)
T ss_dssp CTTCCE
T ss_pred HcCCCE
Confidence 899985
No 116
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=29.50 E-value=8.5 Score=25.51 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=15.8
Q ss_pred cccCccccccccccccCCc
Q 001330 153 PVNRDTGMLYGNAIASIPI 171 (1099)
Q Consensus 153 ~~~~~~g~~~g~~~~~~~~ 171 (1099)
.+||.||+.|==-+..||+
T Consensus 3 R~DP~TG~iYH~~f~ppp~ 21 (31)
T d1zaka2 3 RLDPVTGKIYHLKYSPPEN 21 (31)
T ss_dssp EECTTTCCEEESSSSCCCS
T ss_pred cCCCCCCcEeEEecCCCCC
Confidence 4799999999988877764
No 117
>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=28.51 E-value=68 Score=30.95 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=45.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCe--E-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAK--F-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP 1028 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~--v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP 1028 (1099)
-+|.-+|-++......+..+++.|+. + ....+..+.+..+... .....+||+||+|..=.
T Consensus 85 g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~------~~~~~~fD~iFiDa~k~ 147 (227)
T d1susa1 85 GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKD------EKNHGSYDFIFVDADKD 147 (227)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHC------GGGTTCBSEEEECSCST
T ss_pred cEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhc------cccCCceeEEEeccchh
Confidence 48999999999999999999999873 4 4567888887766321 11234799999997543
No 118
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Probab=28.35 E-value=33 Score=32.49 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=33.9
Q ss_pred HHHHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe
Q 001330 1032 GWEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT 1077 (1099)
Q Consensus 1032 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~ 1077 (1099)
.+++++++++. ..+|||+-.+-.+.++..+++++|+|+++.
T Consensus 163 ~~~~i~~~~~~-----~~iPVia~GGI~t~~d~~~~~~~GAdgV~i 203 (222)
T d1y0ea_ 163 DFQFLKDVLQS-----VDAKVIAEGNVITPDMYKRVMDLGVHCSVV 203 (222)
T ss_dssp HHHHHHHHHHH-----CCSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhc-----CCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 35777777653 368999999988999999999999999865
No 119
>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]}
Probab=28.05 E-value=36 Score=32.71 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=58.1
Q ss_pred HHHHhhcCC--eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEE--EEec-CCCCCCHHHHHHHHhccccccCCCccEE
Q 001330 979 SAVLGKLGA--KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYI--MMDC-EMPVMNGWEATRLIRKEEEQYDVHIPII 1053 (1099)
Q Consensus 979 ~~~L~~~G~--~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlI--lmDi-~MP~mdG~e~~r~IR~~~~~~~~~ipII 1053 (1099)
...|.+.|. .++.+.+..+|+..... ..+.| ++.- .=-+.||+++++++++....++.++.|+
T Consensus 103 ~~~L~~~Gi~vn~T~vfs~~Qa~~Aa~a------------ga~yispyvgR~~d~g~d~~~~~~~~~~~~~~~~~~tkil 170 (211)
T d1wx0a1 103 CKRLSAEGIKVNMTLIFSANQALLAARA------------GASYVSPFLGRVDDISWDGGELLREIVEMIQVQDLPVKVI 170 (211)
T ss_dssp HHHHHHTTCCEEEEEECSHHHHHHHHHT------------TCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEE
T ss_pred HHHHhhcCCceeEEEecCHHHHHHHHHc------------CCCEEEEeeecchhccccchhHHHHHHHHHHhccccceeE
Confidence 356677786 46788999999987742 12221 1110 0126799999999987766555566666
Q ss_pred EEeccCCHHHHHHHHHcCCCEEE
Q 001330 1054 ALTAHAMAGVASKIVDAGMDFHL 1076 (1099)
Q Consensus 1054 alTa~~~~~~~~~~l~aG~ddyL 1076 (1099)
+ .+--..+...++..+|+|.+-
T Consensus 171 ~-AS~R~~~~~~~~~~~G~d~vT 192 (211)
T d1wx0a1 171 A-ASIRHPRHVTEAALLGADIAT 192 (211)
T ss_dssp E-BCCCSHHHHHHHHHTTCSEEE
T ss_pred e-eecCCHHHHHHHHHcCCCEEE
Confidence 5 455678888999999999873
No 120
>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}
Probab=27.88 E-value=96 Score=29.67 Aligned_cols=92 Identities=15% Similarity=0.195 Sum_probs=62.8
Q ss_pred EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCC--------CCCHHHHHHHHhccccccCCCccEEEEeccCC
Q 001330 989 FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMP--------VMNGWEATRLIRKEEEQYDVHIPIIALTAHAM 1060 (1099)
Q Consensus 989 v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP--------~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~ 1060 (1099)
...+.+-.++...... .+|.|++---.| ...|.++.+.+++. ..++||+++-+- +
T Consensus 119 g~S~h~~~e~~~a~~~------------g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~----~~~~Pv~AiGGI-~ 181 (226)
T d2tpsa_ 119 GVSAHTMSEVKQAEED------------GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ----GISIPIVGIGGI-T 181 (226)
T ss_dssp EEEECSHHHHHHHHHH------------TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT----TCCCCEEEESSC-C
T ss_pred eeeccchHHHHHHHhC------------cCCeEEEecccccccccccccccccchhHHHHHh----cCCCCEEEecCC-C
Confidence 3457787777665532 478888875432 34678888888642 246899999875 4
Q ss_pred HHHHHHHHHcCCCEE-----EeCCCCHHHHHHHHHHHHHHhh
Q 001330 1061 AGVASKIVDAGMDFH-----LTKPLQKDKLLDVVKSIDETME 1097 (1099)
Q Consensus 1061 ~~~~~~~l~aG~ddy-----L~KPi~~~~L~~~l~~i~~~~~ 1097 (1099)
.+...+++++|++++ |.+--++.+....+.+.+++.+
T Consensus 182 ~~ni~~l~~~Ga~giAvis~I~~a~dp~~~~~~~~~~~~~~k 223 (226)
T d2tpsa_ 182 IDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTYK 223 (226)
T ss_dssp TTTSHHHHHTTCSEEEESHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 566788999999986 4444577776666666666544
No 121
>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}
Probab=27.52 E-value=42 Score=31.17 Aligned_cols=67 Identities=21% Similarity=0.168 Sum_probs=45.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCC-eEEE-ECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHh
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGA-KFEV-CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIR 1040 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~-~v~~-a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR 1040 (1099)
.+|..||-|+...+.+++-++..+. .+.. ..| +++.+.. ...+||+|++|-=-.....-+++..|.
T Consensus 67 ~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d---~~~~l~~---------~~~~fDlIf~DPPY~~~~~~~~l~~l~ 134 (183)
T d2fpoa1 67 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSN---AMSFLAQ---------KGTPHNIVFVDPPFRRGLLEETINLLE 134 (183)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSC---HHHHHSS---------CCCCEEEEEECCSSSTTTHHHHHHHHH
T ss_pred ceeEEEEEeechhhHHHHHHhhccccceeeeeec---ccccccc---------cccccCEEEEcCccccchHHHHHHHHH
Confidence 4799999999999999999987765 3333 333 4444421 245799999995222344556777776
Q ss_pred c
Q 001330 1041 K 1041 (1099)
Q Consensus 1041 ~ 1041 (1099)
+
T Consensus 135 ~ 135 (183)
T d2fpoa1 135 D 135 (183)
T ss_dssp H
T ss_pred H
Confidence 4
No 122
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}
Probab=27.17 E-value=1.2e+02 Score=28.61 Aligned_cols=96 Identities=13% Similarity=0.148 Sum_probs=57.0
Q ss_pred HHHHhhcCC-eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEEEEec
Q 001330 979 SAVLGKLGA-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPIIALTA 1057 (1099)
Q Consensus 979 ~~~L~~~G~-~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa 1057 (1099)
.++|++.+. -+....+.++|+...+...+ ..+. ++.+.|-.-+.+++++.|++... +++ +|..-.
T Consensus 3 ~~~l~~~~iipvlr~~~~~~a~~~~~al~~--------~Gi~--~iEitlr~p~a~~~i~~l~~~~~---~~~-~vGaGT 68 (202)
T d1wa3a1 3 EELFKKHKIVAVLRANSVEEAKEKALAVFE--------GGVH--LIEITFTVPDADTVIKELSFLKE---KGA-IIGAGT 68 (202)
T ss_dssp HHHHHHHCEEEEECCSSHHHHHHHHHHHHH--------TTCC--EEEEETTSTTHHHHHHHTHHHHH---TTC-EEEEES
T ss_pred HHHHHhCCEEEEEECCCHHHHHHHHHHHHH--------cCCC--EEEEecCCccHHHHHHHHHHhcC---CCc-EEEecc
Confidence 455665553 34556777777766643221 1223 35555666788898888875321 122 455444
Q ss_pred cCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 001330 1058 HAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089 (1099)
Q Consensus 1058 ~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l 1089 (1099)
-.+.++..++.++|++-.++ |....++.+..
T Consensus 69 V~~~~~~~~a~~aGa~fivs-P~~~~~v~~~~ 99 (202)
T d1wa3a1 69 VTSVEQCRKAVESGAEFIVS-PHLDEEISQFC 99 (202)
T ss_dssp CCSHHHHHHHHHHTCSEEEC-SSCCHHHHHHH
T ss_pred cccHHHHHHHHhhcccEEeC-CCCcHHHHHHH
Confidence 55688899999999985554 54444554443
No 123
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}
Probab=26.83 E-value=18 Score=36.85 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=41.8
Q ss_pred HHHHHHhccccccCCCccEEEEeccCCHHHHHHHHHcCCCEEEe------C-CCCHHHHHHHHHHHHHH
Q 001330 1034 EATRLIRKEEEQYDVHIPIIALTAHAMAGVASKIVDAGMDFHLT------K-PLQKDKLLDVVKSIDET 1095 (1099)
Q Consensus 1034 e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~------K-Pi~~~~L~~~l~~i~~~ 1095 (1099)
..++++++. ..+++|||+..+-.+.+|+.+++.+||+.+-. + |--..++.+-|+++++.
T Consensus 230 ~~i~~i~~~---~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~~Gp~~i~~i~~~L~~~m~~ 295 (311)
T d1juba_ 230 ANVRAFYTR---LKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQ 295 (311)
T ss_dssp HHHHHHHTT---SCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---cCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHhcChHHHHHHHHHHHHHHHH
Confidence 445555543 34579999999999999999999999998633 2 44455555556655554
No 124
>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.88 E-value=54 Score=33.01 Aligned_cols=69 Identities=14% Similarity=0.235 Sum_probs=46.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhc-----CCeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC-----
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKL-----GAKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN----- 1031 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~-----G~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md----- 1031 (1099)
.+|-+||-|+.+.++.++.+... .-.+ ....||.+-+... ....||+|++|+.-|...
T Consensus 105 ~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~-----------~~~~yDvIi~D~~dp~~~~~~L~ 173 (290)
T d1xj5a_ 105 EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----------AEGSYDAVIVDSSDPIGPAKELF 173 (290)
T ss_dssp CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----------CTTCEEEEEECCCCTTSGGGGGG
T ss_pred eeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhc-----------cccCccEEEEcCCCCCCcchhhC
Confidence 47999999999999999987421 2233 4567887765432 234799999999877432
Q ss_pred HHHHHHHHhcc
Q 001330 1032 GWEATRLIRKE 1042 (1099)
Q Consensus 1032 G~e~~r~IR~~ 1042 (1099)
..|+.+.+++.
T Consensus 174 t~eF~~~~~~~ 184 (290)
T d1xj5a_ 174 EKPFFQSVARA 184 (290)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 24455555543
No 125
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=24.16 E-value=58 Score=32.02 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=31.3
Q ss_pred HHHHHHHhccccccCCCccEEEEecc------CCHHHHHHHHHcCCCEEEeCCCCHHHHHH
Q 001330 1033 WEATRLIRKEEEQYDVHIPIIALTAH------AMAGVASKIVDAGMDFHLTKPLQKDKLLD 1087 (1099)
Q Consensus 1033 ~e~~r~IR~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~ddyL~KPi~~~~L~~ 1087 (1099)
+++++++|+. .++|+|+|+=. .......+|.++|+++.|.--+.+++-.+
T Consensus 69 ~~~~~~~r~~-----~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~ 124 (248)
T d1geqa_ 69 FWIVKEFRRH-----SSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKE 124 (248)
T ss_dssp HHHHHHHHTT-----CCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHH
T ss_pred HHHHHHHhhc-----CCCcEEEEeccccccccCHHHHhhhhcccCeeEEeccCCcHHHHHH
Confidence 4555666642 24788877743 23566777888888888876555555433
No 126
>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}
Probab=23.92 E-value=2.7e+02 Score=26.59 Aligned_cols=86 Identities=19% Similarity=0.133 Sum_probs=60.3
Q ss_pred EECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC-CH--HHHHHHHhccccccCCCccEEEEeccCCHHHHHHH
Q 001330 991 VCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM-NG--WEATRLIRKEEEQYDVHIPIIALTAHAMAGVASKI 1067 (1099)
Q Consensus 991 ~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m-dG--~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~ 1067 (1099)
...+..+.+..+.+. ..=.+|++|+.--++ .| +++++.+++. ..+|+|+-.+-.+.++..++
T Consensus 149 ~~~~~~~~~~~~~~~----------g~~eii~tdI~~dGt~~G~d~~ll~~i~~~-----~~~pvi~~GGv~s~~di~~l 213 (253)
T d1thfd_ 149 TGILLRDWVVEVEKR----------GAGEILLTSIDRDGTKSGYDTEMIRFVRPL-----TTLPIIASGGAGKMEHFLEA 213 (253)
T ss_dssp EEEEHHHHHHHHHHT----------TCSEEEEEETTTTTSCSCCCHHHHHHHGGG-----CCSCEEEESCCCSHHHHHHH
T ss_pred cchhHHHHHHHHHhc----------cCCEEEEEEecccCccCCcccccccccccc-----ccceEEEecCCCCHHHHHHH
Confidence 344556666665431 122499999986543 34 6788888753 35799999999999999999
Q ss_pred HHcCCCEEEe------CCCCHHHHHHHHHH
Q 001330 1068 VDAGMDFHLT------KPLQKDKLLDVVKS 1091 (1099)
Q Consensus 1068 l~aG~ddyL~------KPi~~~~L~~~l~~ 1091 (1099)
.+.|+++.+. +-++.+++.+.+++
T Consensus 214 ~~~g~~gvivgsal~~~~~~~~~~k~~l~~ 243 (253)
T d1thfd_ 214 FLAGADAALAASVFHFREIDVRELKEYLKK 243 (253)
T ss_dssp HHTTCSEEEESHHHHTTCSCHHHHHHHHHH
T ss_pred HHCCCCEEEEchHHHcCCCCHHHHHHHHHH
Confidence 9999999754 45677777665543
No 127
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=23.54 E-value=1.1e+02 Score=29.08 Aligned_cols=111 Identities=13% Similarity=0.050 Sum_probs=57.6
Q ss_pred CCEEEEEeCC---HHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCH----HH
Q 001330 962 GKKFLVVEDD---AIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNG----WE 1034 (1099)
Q Consensus 962 ~~~ILvVdDd---~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG----~e 1034 (1099)
+++|.+|--| .--.+.++.+-+..|..+..+.+..+....+.+.+... ....+|+||+|- |+.+- ..
T Consensus 40 g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~~----~~~~~d~IlIDT--aGr~~~~~~~~ 113 (211)
T d1j8yf2 40 GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF----LSEKMEIIIVDT--AGRHGYGEEAA 113 (211)
T ss_dssp TCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH----HHTTCSEEEEEC--CCSCCTTCHHH
T ss_pred CCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHHHh----hccCCceEEEec--CCcCccchhhH
Confidence 4567766554 23445566666777889988877666544333211111 123689999994 55421 22
Q ss_pred HHHHHhccccccCCCccEEEEeccCCHHHHHH----HHHcCCCEE-EeC
Q 001330 1035 ATRLIRKEEEQYDVHIPIIALTAHAMAGVASK----IVDAGMDFH-LTK 1078 (1099)
Q Consensus 1035 ~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~----~l~aG~ddy-L~K 1078 (1099)
.+.++++......+.-.++++.+....+.... ....|.+.+ ++|
T Consensus 114 ~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~TK 162 (211)
T d1j8yf2 114 LLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITK 162 (211)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHCTTEEEEEEC
T ss_pred HHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcccCcceEEEec
Confidence 23333332222223345666766554333322 234577765 444
No 128
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}
Probab=23.31 E-value=97 Score=29.65 Aligned_cols=99 Identities=9% Similarity=0.116 Sum_probs=59.6
Q ss_pred HHHHHHHHhhcCC-eEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccccccCCCccEE
Q 001330 975 LKVTSAVLGKLGA-KFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEEEQYDVHIPII 1053 (1099)
Q Consensus 975 ~~~l~~~L~~~G~-~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~~~~~~~ipII 1053 (1099)
+..+..+|++.+. -|....+.++|++..+... . ..+.+ +.+.+..-+.+++++.+|+.. +++ +|
T Consensus 7 ~~~i~~~l~~~~iipvl~~~~~~~a~~~~~al~----~----~Gi~~--iEitl~~p~a~~~i~~l~~~~----p~~-~v 71 (216)
T d1mxsa_ 7 AARIDAICEKARILPVITIAREEDILPLADALA----A----GGIRT--LEVTLRSQHGLKAIQVLREQR----PEL-CV 71 (216)
T ss_dssp HHHHHHHHHHHSEEEEECCSCGGGHHHHHHHHH----H----TTCCE--EEEESSSTHHHHHHHHHHHHC----TTS-EE
T ss_pred HHHHHHHHHhCCEEEEEECCCHHHHHHHHHHHH----H----CCCCE--EEEeCCChhHHHHHHHHHHhC----CCc-ce
Confidence 3445566665543 3445566666666654321 1 12333 444455557888888888643 232 45
Q ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 001330 1054 ALTAHAMAGVASKIVDAGMDFHLTKPLQKDKLLDVV 1089 (1099)
Q Consensus 1054 alTa~~~~~~~~~~l~aG~ddyL~KPi~~~~L~~~l 1089 (1099)
..-.-.+.++..++.++|++ |+.-|..-.++.+..
T Consensus 72 GaGTV~~~~~~~~a~~aGa~-FivsP~~~~~v~~~a 106 (216)
T d1mxsa_ 72 GAGTVLDRSMFAAVEAAGAQ-FVVTPGITEDILEAG 106 (216)
T ss_dssp EEECCCSHHHHHHHHHHTCS-SEECSSCCHHHHHHH
T ss_pred eeeeeecHHHHHHHHhCCCC-EEECCCCcHHHHHHH
Confidence 55556678899999999996 555576666665544
No 129
>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]}
Probab=23.30 E-value=45 Score=32.19 Aligned_cols=94 Identities=15% Similarity=0.049 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhcCCe--EEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEE--Ee-cCCCCCCHHHHHHHHhcccccc
Q 001330 972 AIVLKVTSAVLGKLGAK--FEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIM--MD-CEMPVMNGWEATRLIRKEEEQY 1046 (1099)
Q Consensus 972 ~~~~~~l~~~L~~~G~~--v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIl--mD-i~MP~mdG~e~~r~IR~~~~~~ 1046 (1099)
+.-.+. .+.|++.|.. ++.+.+..+|+...... .+.|- .. +.--+.||++.++.+++....+
T Consensus 90 ~~G~~a-i~~L~~~Gi~~n~Tavfs~~Qa~~Aa~ag------------a~yispy~gR~~d~g~d~~~~i~~~~~~~~~~ 156 (218)
T d1vpxa_ 90 PDGIKA-VKTLSAEGIKTNVTLVFSPAQAILAAKAG------------ATYVSPFVGRMDDLSNDGMRMLGEIVEIYNNY 156 (218)
T ss_dssp HHHHHH-HHHHHHTTCCEEEEEECSHHHHHHHHHHT------------CSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred ccchHH-HHHHHHcCCceeeEEecCHHHHHHHHhcC------------CCEEEeeecchhhhcccchhhHHHHHHHHhhh
Confidence 333444 4566778864 57789999998877431 22221 00 0012678999999998776555
Q ss_pred CCCccEEEEeccCCHHHHHHHHHcCCCEEEeCC
Q 001330 1047 DVHIPIIALTAHAMAGVASKIVDAGMDFHLTKP 1079 (1099)
Q Consensus 1047 ~~~ipIIalTa~~~~~~~~~~l~aG~ddyL~KP 1079 (1099)
+..+.|++ .+--...+..++..+|+|.+-.-|
T Consensus 157 ~~~tkil~-AS~r~~~~v~~a~~~G~d~iTip~ 188 (218)
T d1vpxa_ 157 GFETEIIA-ASIRHPMHVVEAALMGVDIVTMPF 188 (218)
T ss_dssp TCSCEEEE-BSCCSHHHHHHHHHHTCSEEEECH
T ss_pred cccceeee-eccCCHHHHHHHHHcCCCEEEcCH
Confidence 55666665 556678889999999999664433
No 130
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.27 E-value=63 Score=29.65 Aligned_cols=91 Identities=12% Similarity=0.198 Sum_probs=51.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEe-cCCCCCCHHHHHHHHhcc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMD-CEMPVMNGWEATRLIRKE 1042 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmD-i~MP~mdG~e~~r~IR~~ 1042 (1099)
.|+|+|-..-+...+.+.|++.|+++.+..+... ++.+.. ..+|-|++- -..+..+. ...+.+++.
T Consensus 2 mI~iiD~g~~~~~~i~~~L~~~G~~~~v~~~~~~-~~~~~~-----------~~~~gvilsgg~~~~~~~-~~~~~i~~~ 68 (188)
T d1wl8a1 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTP-LEEIKA-----------MNPKGIIFSGGPSLENTG-NCEKVLEHY 68 (188)
T ss_dssp EEEEEECSCTTHHHHHHHHHHTTCEEEEEETTCC-HHHHHH-----------TCCSEEEECCCSCTTCCT-THHHHHHTG
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCC-HHHHhh-----------hccceeeeccCccccccc-ccccccccc
Confidence 5899997766666778899999999988765433 222221 245655443 22221221 223334432
Q ss_pred ccccCCCccEEEEeccCCHHHHHHHHHcCCCE
Q 001330 1043 EEQYDVHIPIIALTAHAMAGVASKIVDAGMDF 1074 (1099)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~dd 1074 (1099)
.. ..+||+.+. -..+.-+...|..-
T Consensus 69 ~~---~~~PiLGIC----lG~Q~l~~~~G~~~ 93 (188)
T d1wl8a1 69 DE---FNVPILGIC----LGHQLIAKFFGGKV 93 (188)
T ss_dssp GG---TCSCEEEET----HHHHHHHHHHTCEE
T ss_pred cc---cccceeehh----hhhhhhhhhcCCcc
Confidence 21 358999887 33445555666544
No 131
>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}
Probab=23.12 E-value=66 Score=28.64 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=44.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCe--EEE-ECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCC--CHHHHHH
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAK--FEV-CRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVM--NGWEATR 1037 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~--v~~-a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~m--dG~e~~r 1037 (1099)
.+|..||-++...+.+++.++..|.. +.. ..|..+.++. ....||+|++|. |-- .....+.
T Consensus 38 ~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~------------~~~~fDiIf~DP--Py~~~~~~~~l~ 103 (152)
T d2esra1 38 SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC------------LTGRFDLVFLDP--PYAKETIVATIE 103 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH------------BCSCEEEEEECC--SSHHHHHHHHHH
T ss_pred ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc------------cccccceeEech--hhccchHHHHHH
Confidence 48999999999999999999988752 443 3565554432 235799999993 422 2234555
Q ss_pred HHhc
Q 001330 1038 LIRK 1041 (1099)
Q Consensus 1038 ~IR~ 1041 (1099)
.|.+
T Consensus 104 ~i~~ 107 (152)
T d2esra1 104 ALAA 107 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 132
>d1tyja1 b.2.2.2 (A:2-171) Cellulosomal scaffoldin ScaA {Bacteroides cellulosolvens [TaxId: 35825]}
Probab=22.29 E-value=10 Score=34.85 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=15.3
Q ss_pred eeccccCcccccccccc
Q 001330 150 YTQPVNRDTGMLYGNAI 166 (1099)
Q Consensus 150 ~~~~~~~~~g~~~g~~~ 166 (1099)
+-|||||+||+.|.+..
T Consensus 43 vLQ~V~p~tG~~y~~~t 59 (170)
T d1tyja1 43 YLQPWDTIADEAYTDST 59 (170)
T ss_dssp TEEEEETTTTEECCTTC
T ss_pred HeecccCCCCCcccccc
Confidence 56999999999999877
No 133
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=22.13 E-value=34 Score=31.85 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=43.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCe---E-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC--HHHHH
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLGAK---F-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN--GWEAT 1036 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G~~---v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md--G~e~~ 1036 (1099)
..|..||-|......+++-++..+.. + ....+..+.+.. .....+||+|++|- |-.. ..+++
T Consensus 67 ~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~----------~~~~~~fDlIFlDP--PY~~~~~~~~l 134 (183)
T d2ifta1 67 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ----------PQNQPHFDVVFLDP--PFHFNLAEQAI 134 (183)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS----------CCSSCCEEEEEECC--CSSSCHHHHHH
T ss_pred eeeEEeecccchhhhHhhHHhhhcccccccccccccccccccc----------cccCCcccEEEech--hHhhhhHHHHH
Confidence 47999999999999999999988742 3 334554333211 11234699999996 4322 44566
Q ss_pred HHHhc
Q 001330 1037 RLIRK 1041 (1099)
Q Consensus 1037 r~IR~ 1041 (1099)
..|.+
T Consensus 135 ~~l~~ 139 (183)
T d2ifta1 135 SLLCE 139 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 134
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=21.61 E-value=1.4e+02 Score=28.19 Aligned_cols=112 Identities=12% Similarity=0.095 Sum_probs=59.8
Q ss_pred CCEEEEEeCCH---HHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHH
Q 001330 962 GKKFLVVEDDA---IVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRL 1038 (1099)
Q Consensus 962 ~~~ILvVdDd~---~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~ 1038 (1099)
+++|.+|--|. --.+.++.+-+..|..+..+.++.+....+....... ....+|+||+|--==...--+.+.+
T Consensus 39 ~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~----~~~~~d~ilIDTaGr~~~d~~~~~e 114 (213)
T d1vmaa2 39 GKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA----LARNKDVVIIDTAGRLHTKKNLMEE 114 (213)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH----HHTTCSEEEEEECCCCSCHHHHHHH
T ss_pred CCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHHHHH----HHcCCCEEEEeccccccchHHHHHH
Confidence 34666665442 2345566666778899988887665444332211100 1236899999973211222334444
Q ss_pred Hhcccccc------CCCccEEEEeccCCHHHHHHHH----HcCCCEEEe
Q 001330 1039 IRKEEEQY------DVHIPIIALTAHAMAGVASKIV----DAGMDFHLT 1077 (1099)
Q Consensus 1039 IR~~~~~~------~~~ipIIalTa~~~~~~~~~~l----~aG~ddyL~ 1077 (1099)
+++..... .+.-+++++.+....++..++. ..|.++.|.
T Consensus 115 l~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~ 163 (213)
T d1vmaa2 115 LRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIIL 163 (213)
T ss_dssp HHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhccccCCceEEE
Confidence 43322111 1234577888877666555443 467887643
No 135
>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.89 E-value=27 Score=34.77 Aligned_cols=26 Identities=27% Similarity=0.703 Sum_probs=22.4
Q ss_pred CCccccHHHHHHHHHhcCCEEEEEec
Q 001330 625 EGLGLGLGIVQSMVHLMKGEIAIADK 650 (1099)
Q Consensus 625 ~GtGLGLaIvk~lVe~~gG~I~v~s~ 650 (1099)
++.|||++|++.|++..|.++-+...
T Consensus 11 as~GIG~a~A~~la~~~g~~Vi~~~r 36 (275)
T d1wmaa1 11 GNKGIGLAIVRDLCRLFSGDVVLTAR 36 (275)
T ss_dssp CSSHHHHHHHHHHHHHSSSEEEEEES
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEEC
Confidence 57899999999999998888887554
No 136
>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}
Probab=20.63 E-value=79 Score=32.09 Aligned_cols=67 Identities=27% Similarity=0.414 Sum_probs=42.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhcC-----CeE-EEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCC-----
Q 001330 963 KKFLVVEDDAIVLKVTSAVLGKLG-----AKF-EVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMN----- 1031 (1099)
Q Consensus 963 ~~ILvVdDd~~~~~~l~~~L~~~G-----~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~md----- 1031 (1099)
.+|-+||-|+.+.++.+..+.... -.+ ....||.+.++. ....||+|++|+.-|...
T Consensus 131 ~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~------------~~~~yDvII~D~~dp~~~~~~L~ 198 (312)
T d2b2ca1 131 EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN------------HKNEFDVIITDSSDPVGPAESLF 198 (312)
T ss_dssp CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH------------CTTCEEEEEECCC----------
T ss_pred ceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh------------CCCCCCEEEEcCCCCCCcchhhh
Confidence 489999999999999999885321 234 346788776643 234799999999776432
Q ss_pred HHHHHHHHhc
Q 001330 1032 GWEATRLIRK 1041 (1099)
Q Consensus 1032 G~e~~r~IR~ 1041 (1099)
..|+.+.+++
T Consensus 199 t~eFy~~~~~ 208 (312)
T d2b2ca1 199 GQSYYELLRD 208 (312)
T ss_dssp ---HHHHHHH
T ss_pred hHHHHHHHHh
Confidence 2344555554
No 137
>d1r8ja2 c.23.1.5 (A:1-135) N-terminal domain of the circadian clock protein KaiA {Synechococcus elongatus [TaxId: 32046]}
Probab=20.11 E-value=2.7e+02 Score=24.33 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=58.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHhhhhhhcCCCCCccEEEEecCCCCCCHHHHHHHHhccc
Q 001330 964 KFLVVEDDAIVLKVTSAVLGKLGAKFEVCRNGKEAFDHVCKILSDLRKEGKALPYDYIMMDCEMPVMNGWEATRLIRKEE 1043 (1099)
Q Consensus 964 ~ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~r~IR~~~ 1043 (1099)
.|-+.=-++...+.++..|...-|.+....++++-++.+.+ ....+|++++--. ..+-..+..++++.
T Consensus 6 tI~l~l~s~~L~q~~~q~L~~dRY~l~~~~s~~ef~~~le~---------~~e~iDcLVl~~~--~~~l~~l~~qL~~~- 73 (135)
T d1r8ja2 6 AICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQT---------HRDQIDCLILVAA--NPSFRAVVQQLCFE- 73 (135)
T ss_dssp EEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHH---------STTSCSEEEEETT--STTHHHHHHHHHHT-
T ss_pred EEEEEeCCHHHHHHHHHhcCCCceEEEEcCCHHHHHHHHHh---------CcccCCEEEEEec--CCccHHHHHHHHhc-
Confidence 46566667888889999998778999999999999998865 3457999876222 23334455677754
Q ss_pred cccCCCccEEEEeccC
Q 001330 1044 EQYDVHIPIIALTAHA 1059 (1099)
Q Consensus 1044 ~~~~~~ipIIalTa~~ 1059 (1099)
+.-.|+|++....
T Consensus 74 ---GlLlPaViv~~~~ 86 (135)
T d1r8ja2 74 ---GVVVPAIVVGDRD 86 (135)
T ss_dssp ---TCCCCEEEESCCC
T ss_pred ---CccccEEEEecCC
Confidence 3457999885443
Done!