BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001331
(1099 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/1025 (44%), Positives = 662/1025 (64%), Gaps = 30/1025 (2%)
Query: 91 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVE 150
+IDE L+SRQL V G+E M ++ SN+L+ G++GLG EIAKN++LAGVKS+T+ D V+
Sbjct: 4 EIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQ 63
Query: 151 LWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTD-I 209
L DLS+ F ++ DIG+ R + KL ELN V ++ L S QLS FQ VV TD +
Sbjct: 64 LADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDSLDDVTQLSQFQVVVATDTV 123
Query: 210 SLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASIS 269
SL+ ++ ++FCH+ I FI +E RGLFG+ F D G EFTV+D GE+P TG+++ I
Sbjct: 124 SLEDKVKINEFCHSS--GIRFISSETRGLFGNTFVDLGDEFTVLDPTGEEPRTGMVSDIE 181
Query: 270 NDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYG 329
D V+ +DD R +DG+ V FSEV G+ +LNDG K++ P++F + YG
Sbjct: 182 PD--GTVTMLDDNRHGLEDGNFVRFSEVEGLDKLNDGTLFKVEVLGPFAFRIGS-VKEYG 238
Query: 330 TYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKF-VSE 388
Y KGGI T+VK P+ ++FK L++ L +P +F+ SDF+KFDR LHL FQAL +F V
Sbjct: 239 EYKKGGIFTEVKVPRKISFKSLKQQLSNP-EFVFSDFAKFDRAAQLHLGFQALHQFAVRH 297
Query: 389 LGRFPVAGSEEDAQKLISVATNIN----ESLGDGRVEDINTKLLRHFAFGARAVLNPMAA 444
G P ++EDA +LI + T+++ E LG+G D+N L++ ++ AR + + A
Sbjct: 298 NGELPRTMNDEDANELIKLVTDLSVQQPEVLGEGV--DVNEDLIKELSYQARGDIPGVVA 355
Query: 445 MFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTE---PLDSTEFKPINSRYDAQISVF 501
FGG+V QEV+KACSGKF PL QF YFDS+ESLP P + +P+NSRYD QI+VF
Sbjct: 356 FFGGLVAQEVLKACSGKFTPLKQFMYFDSLESLPDPKNFPRNEKTTQPVNSRYDNQIAVF 415
Query: 502 GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFL 561
G QKK+ ++KVF+VGSGA+GCE LKN AL+G+ G+ G + +TD+D IEKSNL+RQFL
Sbjct: 416 GLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFL 475
Query: 562 FRDWNIGQXXXXXXXXXXXXINPRLN--IEALQNRVGPETENVFDDTFWENITCVINALD 619
FR ++G+ +NP L I A ++VGPETE +F+D+FWE++ V NALD
Sbjct: 476 FRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALD 535
Query: 620 NVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHS 679
NV+AR YVD+RC++++KPLLESGTLG K NTQ++IP LTE+Y +SRDPPEK P+CT+ S
Sbjct: 536 NVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRS 595
Query: 680 FPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECL 739
FP+ IDH + WA+S F+G + VN YL+ P ++ +GD + LE + + L
Sbjct: 596 FPNKIDHTIAWAKSLFQGYFTDSAENVNMYLTQPNFVEQTLKQSGDVKGV--LESISDSL 653
Query: 740 DKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFS 799
K F+DCI WARL+FE F++ +KQL+F FP+DA TS G PFWS KR P PL+F
Sbjct: 654 -SSKPHNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFD 712
Query: 800 SADPSHLHFVMAASILRAETFGIPIPDWTNNPKM--LAEAVDKVMVPDFLPKKDAKILTD 857
+ H HFV+A + LRA +GI D + P + +D +++P+F P + KI +
Sbjct: 713 IYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVN 772
Query: 858 EKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLAN 917
+ + + + + I+ L+ L + +GF+L+P+ FEKDDDTN+H++ I +N
Sbjct: 773 DDDPDPNANAANGSDEIDQLVSSLPD--PSTLAGFKLEPVDFEKDDDTNHHIEFITACSN 830
Query: 918 MRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFA 977
RA+NY I D+ K KFIAGRIIPAIAT+T++ TGLV LELYK++D +E Y+N F
Sbjct: 831 CRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNGFV 890
Query: 978 NLALPLFSMAEPVPPKVIKHRDMSW-TVWDRWILKDNPTLRELIQWL-KDKGLNAYSISC 1035
NLALP F +EP+ ++ + + +WDR+ +K + L +LI+ KD+GL +S
Sbjct: 891 NLALPFFGFSEPIASPKGEYNNKKYDKIWDRFDIKGDIKLSDLIEHFEKDEGLEITMLSY 950
Query: 1036 GSCLLFNSMFP--RHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPL 1093
G LL+ S FP + KER++ + L + V K ++P + + + + +D E D+++P
Sbjct: 951 GVSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAHVSTMILEICADDKEGEDVEVPF 1010
Query: 1094 ISIYF 1098
I+I+
Sbjct: 1011 ITIHL 1015
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In
Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1
(uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1
(uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/1019 (44%), Positives = 651/1019 (63%), Gaps = 37/1019 (3%)
Query: 92 IDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVEL 151
IDE L+SRQL V G E M+++ SN+L+ G +GLG EIAKN+ LAGVKSVTL+D +
Sbjct: 4 IDEGLYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRI 63
Query: 152 WDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISL 211
DLSS + +++DIG RA +V KL ELN V +S + +L+ E L +F+ VV T+ SL
Sbjct: 64 EDLSSQYFLTEDDIGVPRAKVTVSKLAELNQYVPVSVV-DELSTEYLKNFKCVVVTETSL 122
Query: 212 DKAIEFDDFCH-NHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASISN 270
K +E +DF H NH I++I A+ RGLFGS+FCDFG F D DG +P TG+IASI++
Sbjct: 123 TKQLEINDFTHKNH---IAYIAADSRGLFGSIFCDFGENFICTDTDGNEPLTGMIASITD 179
Query: 271 DNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGT 330
D +V+ +++ R ++GD V F+EV GM LNDG PRK++ PY+F++ + G+
Sbjct: 180 D--GVVTMLEETRHGLENGDFVKFTEVKGMPGLNDGTPRKVEVKGPYTFSIG-SVKDLGS 236
Query: 331 YVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFV-SEL 389
G+ TQVK P ++FK LRE+L+DP +++ DF K RPP H+AFQAL F +
Sbjct: 237 AGYNGVFTQVKVPTKISFKSLRESLKDP-EYVYPDFGKMMRPPQYHIAFQALSAFADAHE 295
Query: 390 GRFPVAGSEEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGI 449
G P ++ DA + I +L VE ++ KL++ ++ AR L M+A GG
Sbjct: 296 GSLPRPRNDIDAAEFFEFCKKIASTL-QFDVE-LDEKLIKEISYQARGDLVAMSAFLGGA 353
Query: 450 VGQEVVKACSGKFHPLYQFFYFDSVESLPTEPLDSTE-FKPINSRYDAQISVFGAKLQKK 508
V QEV+KA + KF+PL Q+FYFDS+ESLP+ S E KP RYD QI+VFG++ Q+K
Sbjct: 354 VAQEVLKATTSKFYPLKQYFYFDSLESLPSSVTISEETCKPRGCRYDGQIAVFGSEFQEK 413
Query: 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 568
+ F+VG+GA+GCE LKN A+MGV+ G G +++TD D IEKSNL+RQFLFR ++G
Sbjct: 414 IASLSTFLVGAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLNRQFLFRPRDVG 473
Query: 569 QXXXXXXXXXXXXINPRLN--IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLY 626
+ +NP L I + Q RVGPE+E +F D F+E ++ V NALDNV AR+Y
Sbjct: 474 KLKSECASTAVSIMNPSLTGKITSYQERVGPESEGIFGDEFFEKLSLVTNALDNVEARMY 533
Query: 627 VDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDH 686
VD+RC++F+KPLLESGTLG K NTQ+V+PHLTE+YG+S+DPPEK P+CT+ +FP+ I+H
Sbjct: 534 VDRRCVFFEKPLLESGTLGTKGNTQVVVPHLTESYGSSQDPPEKSFPICTLKNFPNRIEH 593
Query: 687 CLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEI 746
+ WAR FEGL ++ VN YLS+P TS+ + + R+ LE + + L EK
Sbjct: 594 TIAWARDLFEGLFKQPIDNVNMYLSSPNFLETSLKTS--SNPREVLENIRDYLVTEKPLS 651
Query: 747 FQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHL 806
F++CI WARL+F+ +F+N ++QL+F FP+D+ TSTG PFWS PKR P PL F + H
Sbjct: 652 FEECIMWARLQFDKFFNNNIQQLLFNFPKDSVTSTGQPFWSGPKRAPTPLSFDIHNREHF 711
Query: 807 HFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTA 866
F++AA+ L A +G+ +P + + P F PK KI +E TA
Sbjct: 712 DFIVAAASLYAFNYGL---KSETDPAIYERVLAGYNPPPFAPKSGIKIQVNENEEAPETA 768
Query: 867 SVDDAAVINDLIIKLEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRAR 921
+ D +L+ +LP GFRL P +FEKDDD+N+H+D I +N+RA
Sbjct: 769 ANKDKQ-------ELKSIADSLPPPSSLVGFRLTPAEFEKDDDSNHHIDFITAASNLRAM 821
Query: 922 NYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLAL 981
NY I D+ K KF+AG+I+PA+ TSTA+ +GLVCLEL K++DG K+E+Y+N F NLA+
Sbjct: 822 NYDITPADRFKTKFVAGKIVPAMCTSTAVVSGLVCLELVKLVDGKKKIEEYKNGFFNLAI 881
Query: 982 PLFSMAEPVP-PKVIKHRDMSWTVWDRWILKDNPTLRELIQWL-KDKGLNAYSISCGSCL 1039
LF+ ++P+ PK+ + +WDR+ L D TL+ELI + K++GL +S G L
Sbjct: 882 GLFTFSDPIASPKMKVNGKEIDKIWDRYNLPDC-TLQELIDYFQKEEGLEVTMLSSGVSL 940
Query: 1040 LFNSMFPRHK--ERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISI 1096
L+ + P K ER+ K+ +L ++ K +L P+R+HL + + C+D D+++P I I
Sbjct: 941 LYANFQPPKKLAERLPLKISELVEQITKKKLEPFRKHLVLEICCDDANGEDVEVPFICI 999
>pdb|1Z7L|A Chain A, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|B Chain B, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|C Chain C, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
Length = 276
Score = 216 bits (549), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 116/280 (41%), Positives = 165/280 (58%), Gaps = 21/280 (7%)
Query: 669 EKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNP--VEYTTSMANAGDA 726
EK P+CT+ +FP+ I+H L WAR EFEGL ++ VN YL++ VE T +A
Sbjct: 11 EKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDSKFVERTLRLAGT--- 67
Query: 727 QARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFW 786
Q + LE V L ++ + + DC+TWA + + N ++QL+ FP D TS+GAPFW
Sbjct: 68 QPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFW 127
Query: 787 SAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDF 846
S PKR PHPL F + HL +VMAA+ L A+T+G+ + + +A + V VP+F
Sbjct: 128 SGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGL---TGSQDRAAVASLLQSVQVPEF 184
Query: 847 LPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS-----GFRLKPIQFEK 901
PK KI ++ + ASVDD+ +LE+ + LPS GF++ PI FEK
Sbjct: 185 TPKSGVKIHVSDQELQSANASVDDS--------RLEELKATLPSPDKLPGFKMYPIDFEK 236
Query: 902 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRII 941
DDD+N+HMD I +N+RA NY I D+ K+K IAG+II
Sbjct: 237 DDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKII 276
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 174/391 (44%), Gaps = 84/391 (21%)
Query: 97 HSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSS 156
+ RQ+ ++G E +RL AS +L+ G++GLGAEIAKNLILAGVK +T+ D V D +
Sbjct: 19 YDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGA 78
Query: 157 NFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQ---LSDFQAVVFTDISLDK 213
F+ +G+NRA AS+++ Q LN V + T + K+ + F AV T S D
Sbjct: 79 QFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDV 138
Query: 214 AIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASISNDNP 273
++ D CH + +I F +V G G F + G
Sbjct: 139 IVKVDQICHKN--SIKFFTGDVFGYHGYTFANLGEH------------------------ 172
Query: 274 ALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVK 333
EF + V G+ + D K K+ S+ T VK
Sbjct: 173 -----------EFVEEKTKVAKVSQGVEDGPDTKRAKLDSSET-------------TMVK 208
Query: 334 GGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSK------FDRPPPLHLAFQALDKFVS 387
+V F P++EALE D+S R + Q L KF +
Sbjct: 209 KKVV----------FCPVKEALE-------VDWSSEKAKAALKRTTSDYFLLQVLLKFRT 251
Query: 388 ELGRFPVAGS-EEDAQKLISVATNINESLGDGRVEDINTKLL-RHFAFGARAVLNPMAAM 445
+ GR P + + EED++ L+ + ++ +SLG I+ LL F + + P+ A+
Sbjct: 252 DKGRDPSSDTYEEDSELLLQIRNDVLDSLG------ISPDLLPEDFVRYCFSEMAPVCAV 305
Query: 446 FGGIVGQEVVKACSGKFHPLYQFFYFDSVES 476
GGI+ QE+VKA S + P FF+FD ++
Sbjct: 306 VGGILAQEIVKALSQRDPPHNNFFFFDGMKG 336
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 492 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 551
++YD QI ++G + QK+L ++V +VG LG E KN+ L GV LT+ D + +
Sbjct: 17 AQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVK-----GLTMLDHEQV 71
Query: 552 EKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENI 611
+ QFL R ++G+ +NP ++++ + + E+ F +
Sbjct: 72 TPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCL 131
Query: 612 TCVINALDNVNARLYVDQRC 631
TC + + + VDQ C
Sbjct: 132 TCC-----SRDVIVKVDQIC 146
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 101/202 (50%), Gaps = 8/202 (3%)
Query: 504 KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFR 563
+L + + +V +VG+G +GCE LKN+ L G S + + D D I+ SNL+RQFLF+
Sbjct: 12 ELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFS-----HIDLIDLDTIDVSNLNRQFLFQ 66
Query: 564 DWNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNA 623
++G+ P+ NI A + + NV F+ V+NALDN A
Sbjct: 67 KKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNV---EFFRQFILVMNALDNRAA 123
Query: 624 RLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHN 683
R +V++ CL PL+ESGT G + +TE Y P ++ P CT+ + P
Sbjct: 124 RNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSE 183
Query: 684 IDHCLTWARSEFEGLLEKTPAE 705
HC+ WA+ F L + A+
Sbjct: 184 PIHCIVWAKYLFNQLFGEEDAD 205
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 899 FEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLE 958
++KDD + MD + AN+R +S+ + K +AG IIPAIAT+ A+ GL+ LE
Sbjct: 346 WDKDDPS--AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLE 403
Query: 959 LYKVLDGGHKLEDYRNTFAN 978
K+L G K++ R F N
Sbjct: 404 GLKILSG--KIDQCRTIFLN 421
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 106 RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI 165
RE + +LV G G+G E+ KNL+L G + L D T+++ +L+ F+F +
Sbjct: 11 RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 70
Query: 166 GKNRA 170
G+++A
Sbjct: 71 GRSKA 75
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 105/212 (49%), Gaps = 10/212 (4%)
Query: 504 KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFR 563
+L + + +V +VG+G +GCE LKN+ L G S + + D D I+ SNL+RQFLF+
Sbjct: 30 ELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFS-----HIDLIDLDTIDVSNLNRQFLFQ 84
Query: 564 DWNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNA 623
++G+ P+ NI A + + NV F+ V+NALDN A
Sbjct: 85 KKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNV---EFFRQFILVMNALDNRAA 141
Query: 624 RLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHN 683
R +V++ CL PL+ESGT G + +TE Y P ++ P CT+ + P
Sbjct: 142 RNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSE 201
Query: 684 IDHCLTWARSEFEGLL--EKTPAEVNAYLSNP 713
HC+ WA+ F L E EV+ ++P
Sbjct: 202 PIHCIVWAKYLFNQLFGEEDADQEVSPDRADP 233
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 902 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 961
D D MD + AN+R +S+ + K +AG IIPAIAT+ A+ GL+ LE K
Sbjct: 365 DKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLK 424
Query: 962 VLDGGHKLEDYRNTFAN 978
+L G K++ R F N
Sbjct: 425 ILSG--KIDQCRTIFLN 439
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 106 RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI 165
RE + +LV G G+G E+ KNL+L G + L D T+++ +L+ F+F +
Sbjct: 29 RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 88
Query: 166 GKNRA 170
G+++A
Sbjct: 89 GRSKA 93
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 10/212 (4%)
Query: 504 KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFR 563
+L + + +V +VG+G +GCE LKN+ L G S + + D D I+ SNL+RQFLF+
Sbjct: 10 ELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFS-----HIDLIDLDTIDVSNLNRQFLFQ 64
Query: 564 DWNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNA 623
++G+ P+ NI A + + NV F+ V+NALDN A
Sbjct: 65 KKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNV---EFFRQFILVMNALDNRAA 121
Query: 624 RLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHN 683
R +V++ CL PL+ESGT G + +TE Y P ++ P T+ + P
Sbjct: 122 RNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATIRNTPSE 181
Query: 684 IDHCLTWARSEFEGLL--EKTPAEVNAYLSNP 713
HC+ WA+ F L E EV+ ++P
Sbjct: 182 PIHCIVWAKYLFNQLFGEEDADQEVSPDRADP 213
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 902 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 961
D D MD + AN+R +S+ + K +AG IIPAIAT+ A+ GL+ LE K
Sbjct: 345 DKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLK 404
Query: 962 VLDGGHKLEDYRNTFAN 978
+L G K++ R F N
Sbjct: 405 ILSG--KIDQCRTIFLN 419
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 106 RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI 165
RE + +LV G G+G E+ KNL+L G + L D T+++ +L+ F+F +
Sbjct: 9 RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 68
Query: 166 GKNRA 170
G+++A
Sbjct: 69 GRSKA 73
>pdb|2V31|A Chain A, Structure Of First Catalytic Cysteine Half-Domain Of Mouse
Ubiquitin-Activating Enzyme
Length = 112
Score = 109 bits (273), Expect = 8e-24, Method: Composition-based stats.
Identities = 49/111 (44%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
Query: 245 DFGPEFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELN 304
+FG E + D +GE P + +++ ++ DNP +V+C+D+ R F+ GD V FSEV GM +LN
Sbjct: 1 EFGEEMVLTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFETGDFVSFSEVQGMIQLN 60
Query: 305 DGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREAL 355
+P +IK PY+F++ DT+N+ Y++GGIV+QVK PK ++FK L +L
Sbjct: 61 GCQPMEIKVLGPYTFSI-CDTSNFSDYIRGGIVSQVKVPKKISFKSLPASL 110
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 24/202 (11%)
Query: 505 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 564
LQ L+ KV ++G+G LGCE LKN+AL G ++ + D D I+ SNL+RQFLFR
Sbjct: 405 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 459
Query: 565 WNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 624
+IG+ P N+ N++ F+DTF+ ++ LD++ AR
Sbjct: 460 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI-----QDFNDTFYRQFHIIVCGLDSIIAR 514
Query: 625 LYVDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEK 670
+++ + PL++ GT G K N ++++P +T + + PP+
Sbjct: 515 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQV 574
Query: 671 QAPMCTVHSFPHNIDHCLTWAR 692
PMCT+ S P +HC+ + R
Sbjct: 575 NFPMCTIASMPRLPEHCIEYVR 596
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 117 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQK 176
+LV G GLG E+ KNL L+G + + + D T+++ +L+ F+F DIG+ +A + +
Sbjct: 414 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 473
Query: 177 LQE 179
L +
Sbjct: 474 LND 476
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 902 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 961
D D H+ I + RA Y+I V + + RIIPA+A++ A+ + E++K
Sbjct: 613 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 672
Query: 962 V 962
+
Sbjct: 673 I 673
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 24/202 (11%)
Query: 505 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 564
LQ L+ KV ++G+G LGCE LKN+AL G ++ + D D I+ SNL+RQFLFR
Sbjct: 63 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 117
Query: 565 WNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 624
+IG+ P N+ N++ F+DTF+ ++ LD++ AR
Sbjct: 118 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI-----QDFNDTFYRQFHIIVCGLDSIIAR 172
Query: 625 LYVDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEK 670
+++ + PL++ GT G K N ++++P +T + + PP+
Sbjct: 173 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQV 232
Query: 671 QAPMCTVHSFPHNIDHCLTWAR 692
PMCT+ S P +HC+ + R
Sbjct: 233 NFPMCTIASMPRLPEHCIEYVR 254
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 117 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQK 176
+LV G GLG E+ KNL L+G + + + D T+++ +L+ F+F DIG+ +A + +
Sbjct: 72 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 131
Query: 177 LQE 179
L +
Sbjct: 132 LND 134
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 902 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 961
D D H+ I + RA Y+I V + + RIIPA+A++ A+ + E++K
Sbjct: 271 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 330
Query: 962 V 962
+
Sbjct: 331 I 331
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 24/202 (11%)
Query: 505 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 564
LQ L+ KV ++G+G LGCE LKN+AL G ++ + D D I+ SNL+RQFLFR
Sbjct: 44 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 98
Query: 565 WNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 624
+IG+ P N+ N++ F+DTF+ ++ LD++ AR
Sbjct: 99 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI-----QDFNDTFYRQFHIIVCGLDSIIAR 153
Query: 625 LYVDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEK 670
+++ + PL++ GT G K N ++++P +T + + PP+
Sbjct: 154 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQV 213
Query: 671 QAPMCTVHSFPHNIDHCLTWAR 692
PMCT+ S P +HC+ + R
Sbjct: 214 NFPMCTIASMPRLPEHCIEYVR 235
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 117 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQK 176
+LV G GLG E+ KNL L+G + + + D T+++ +L+ F+F DIG+ +A + +
Sbjct: 53 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 112
Query: 177 LQE 179
L +
Sbjct: 113 LND 115
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 902 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 961
D D H+ I + RA Y+I V + + RIIPA+A++ A+ + E++K
Sbjct: 252 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 311
Query: 962 V 962
+
Sbjct: 312 I 312
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 24/202 (11%)
Query: 505 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 564
LQ L+ KV ++G+G LGCE LKN+AL G ++ + D D I+ SNL+RQFLFR
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 88
Query: 565 WNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 624
+IG+ P N+ N++ F+DTF+ ++ LD++ AR
Sbjct: 89 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI-----QDFNDTFYRQFHIIVCGLDSIIAR 143
Query: 625 LYVDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEK 670
+++ + PL++ GT G K N ++++P +T + + PP+
Sbjct: 144 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQV 203
Query: 671 QAPMCTVHSFPHNIDHCLTWAR 692
PMCT+ S P +HC+ + R
Sbjct: 204 NFPMCTIASMPRLPEHCIEYVR 225
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 117 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQK 176
+LV G GLG E+ KNL L+G + + + D T+++ +L+ F+F DIG+ +A + +
Sbjct: 43 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 102
Query: 177 LQE 179
L +
Sbjct: 103 LND 105
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 902 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 961
D D H+ I + RA Y+I V + + RIIPA+A++ A+ + E++K
Sbjct: 242 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 301
Query: 962 VLDGGH 967
+ +
Sbjct: 302 IATSAY 307
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 24/202 (11%)
Query: 505 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 564
LQ L+ KV ++G+G LGCE LKN+AL G ++ + D D I+ SNL+RQFLFR
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 88
Query: 565 WNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 624
+IG+ P N+ N++ F+DTF+ ++ LD++ AR
Sbjct: 89 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI-----QDFNDTFYRQFHIIVCGLDSIIAR 143
Query: 625 LYVDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEK 670
+++ + PL++ GT G K N Q+++P +T + + PP+
Sbjct: 144 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAQVILPGMTACIECTLELYPPQV 203
Query: 671 QAPMCTVHSFPHNIDHCLTWAR 692
PM T+ S P +HC+ + R
Sbjct: 204 NFPMATIASMPRLPEHCIEYVR 225
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 117 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQK 176
+LV G GLG E+ KNL L+G + + + D T+++ +L+ F+F DIG+ +A + +
Sbjct: 43 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 102
Query: 177 LQE 179
L +
Sbjct: 103 LND 105
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 902 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 961
D D H+ I + RA Y+I V + + RIIPA+A++ A+ + E++K
Sbjct: 242 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 301
Query: 962 VLDGGH 967
+ +
Sbjct: 302 IATSAY 307
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 24/202 (11%)
Query: 505 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 564
LQ L+ KV ++G+G LGCE LKN+AL G ++ + D D I+ SNL+RQFLFR
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 88
Query: 565 WNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 624
+IG+ P N+ N++ F+DTF+ ++ LD++ AR
Sbjct: 89 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI-----QDFNDTFYRQFHIIVCGLDSIIAR 143
Query: 625 LYVDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEK 670
+++ + PL++ GT G K N ++++P +T + + PP+
Sbjct: 144 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQV 203
Query: 671 QAPMCTVHSFPHNIDHCLTWAR 692
PM T+ S P +HC+ + R
Sbjct: 204 NFPMATIASMPRLPEHCIEYVR 225
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 117 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQK 176
+LV G GLG E+ KNL L+G + + + D T+++ +L+ F+F DIG+ +A + +
Sbjct: 43 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 102
Query: 177 LQE 179
L +
Sbjct: 103 LND 105
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 902 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 961
D D H+ I + RA Y+I V + + RIIPA+A++ A+ + E++K
Sbjct: 242 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 301
Query: 962 VLDGGH 967
+ +
Sbjct: 302 IATSAY 307
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 24/202 (11%)
Query: 505 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 564
LQ L+ KV ++G+G LGCE LKN+AL G ++ + D D I+ SNL+RQFLFR
Sbjct: 31 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 85
Query: 565 WNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 624
+IG+ P N+ N++ F+DTF+ ++ LD++ AR
Sbjct: 86 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI-----QDFNDTFYRQFHIIVCGLDSIIAR 140
Query: 625 LYVDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEK 670
+++ + PL++ GT G K N ++++P +T + + PP+
Sbjct: 141 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQV 200
Query: 671 QAPMCTVHSFPHNIDHCLTWAR 692
PM T+ S P +HC+ + R
Sbjct: 201 NFPMATIASMPRLPEHCIEYVR 222
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 117 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQK 176
+LV G GLG E+ KNL L+G + + + D T+++ +L+ F+F DIG+ +A + +
Sbjct: 40 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 99
Query: 177 LQE 179
L +
Sbjct: 100 LND 102
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 902 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 961
D D H+ I + RA Y+I V + + RIIPA+A++ A+ + E++K
Sbjct: 239 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 298
Query: 962 VLDGGH 967
+ +
Sbjct: 299 IATSAY 304
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 24/202 (11%)
Query: 505 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 564
LQ L+ KV ++G+G LGCE LKN+AL G ++ + D D I+ SNL+RQFLFR
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 88
Query: 565 WNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 624
+IG+ P N+ N++ F+DTF+ ++ LD++ AR
Sbjct: 89 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI-----QDFNDTFYRQFHIIVCGLDSIIAR 143
Query: 625 LYVDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEK 670
+++ + PL++ GT G K N +++P +T + + PP+
Sbjct: 144 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAAVILPGMTACIECTLELYPPQV 203
Query: 671 QAPMCTVHSFPHNIDHCLTWAR 692
PM T+ S P +HC+ + R
Sbjct: 204 NFPMATIASMPRLPEHCIEYVR 225
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 117 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQK 176
+LV G GLG E+ KNL L+G + + + D T+++ +L+ F+F DIG+ +A + +
Sbjct: 43 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 102
Query: 177 LQE 179
L +
Sbjct: 103 LND 105
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 902 DDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 961
D D H+ I + RA Y+I V + + RIIPA+A++ A+ + E++K
Sbjct: 242 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 301
Query: 962 VLDGGH 967
+ +
Sbjct: 302 IATSAY 307
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 63.9 bits (154), Expect = 5e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 11/165 (6%)
Query: 493 RYDAQISVFGAKL--QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550
RY QI + L Q+KL D++V I+G G LG +A GV G L + DDD
Sbjct: 10 RYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGV-----GTLVLADDDD 64
Query: 551 IEKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWEN 610
+ SNL RQ LF +I + +NP + + ALQ R+ T D
Sbjct: 65 VHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRL---TGEALKDAV-AR 120
Query: 611 ITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIP 655
V++ DN+ R ++ C+ PL+ + +G ++ P
Sbjct: 121 ADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTP 165
Score = 62.8 bits (151), Expect = 9e-10, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 4/127 (3%)
Query: 88 NQTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHD 145
+ D D +SRQ+ + + ++L S +L+ G+ GLG A L AGV ++ L D
Sbjct: 2 SMNDRDFMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLAD 61
Query: 146 EGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVV 205
+ V L +L +F+ DI + ++ S Q+L +LN + L+ L +LT E L D AV
Sbjct: 62 DDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKD--AVA 119
Query: 206 FTDISLD 212
D+ LD
Sbjct: 120 RADVVLD 126
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 11/165 (6%)
Query: 493 RYDAQISVFGAKL--QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550
RY QI + L Q+KL D++V I+G G LG +A GV G L + DDD
Sbjct: 8 RYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGV-----GTLVLADDDD 62
Query: 551 IEKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWEN 610
+ SNL RQ LF +I + +NP + + ALQ R+ T D
Sbjct: 63 VHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRL---TGEALKDAV-AR 118
Query: 611 ITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIP 655
V++ DN+ R ++ C+ PL+ + +G ++ P
Sbjct: 119 ADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTP 163
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 91 DIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 148
D D +SRQ+ + + ++L S +L+ G+ GLG A L AGV ++ L D+
Sbjct: 3 DRDFMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62
Query: 149 VELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTD 208
V L +L +F+ DI + ++ S Q+L +LN + L+ L +LT E L D AV D
Sbjct: 63 VHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKD--AVARAD 120
Query: 209 ISLD 212
+ LD
Sbjct: 121 VVLD 124
>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 536
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 92 IDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVEL 151
+ E + RQL ++G L ++++ + G EI KNL+L G+ S T+ D V
Sbjct: 10 LKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSG 69
Query: 152 WDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSD--------FQA 203
D +NF + IGKNRA A+++ LQELN+ V S + + E L D F
Sbjct: 70 EDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE--SPENLLDNDPSFFCRFTV 127
Query: 204 VVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFG 240
VV T + ++ D N Q I + GL G
Sbjct: 128 VVATQLPESTSLRLADVLWNSQ--IPLLICRTYGLVG 162
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 493 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE 552
+YD Q+ ++G Q+ LE A V ++ + A G E LKN+ L G+ G TI D + +
Sbjct: 14 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 68
Query: 553 KSNLSRQFLFRDWNIGQ 569
+ F + +IG+
Sbjct: 69 GEDAGNNFFLQRSSIGK 85
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 360 DFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGS---EEDAQKLISVATNINESLG 416
D ++S D L+L +A+D+F + GR+P + EED KL S T + G
Sbjct: 412 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 471
Query: 417 DGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 462
+ + + F A + +AA GG QEV+K + +F
Sbjct: 472 LSVM--VKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQF 515
>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|C Chain C, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 534
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 92 IDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVEL 151
+ E + RQL ++G L ++++ + G EI KNL+L G+ S T+ D V
Sbjct: 8 LKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSG 67
Query: 152 WDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSD--------FQA 203
D +NF + IGKNRA A+++ LQELN+ V S + + E L D F
Sbjct: 68 EDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE--SPENLLDNDPSFFCRFTV 125
Query: 204 VVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFG 240
VV T + ++ D N Q I + GL G
Sbjct: 126 VVATQLPESTSLRLADVLWNSQ--IPLLICRTYGLVG 160
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 493 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE 552
+YD Q+ ++G Q+ LE A V ++ + A G E LKN+ L G+ G TI D + +
Sbjct: 12 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 66
Query: 553 KSNLSRQFLFRDWNIGQ 569
+ F + +IG+
Sbjct: 67 GEDAGNNFFLQRSSIGK 83
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 360 DFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGS---EEDAQKLISVATNINESLG 416
D ++S D L+L +A+D+F + GR+P + EED KL S T + G
Sbjct: 410 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 469
Query: 417 DGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 462
+ + + F A + +AA GG QEV+K + +F
Sbjct: 470 LSVM--VKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQF 513
>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 529
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 92 IDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVEL 151
+ E + RQL ++G L ++++ + G EI KNL+L G+ S T+ D V
Sbjct: 8 LKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSG 67
Query: 152 WDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSD--------FQA 203
D +NF + IGKNRA A+++ LQELN+ V S + + E L D F
Sbjct: 68 EDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE--SPENLLDNDPSFFCRFTV 125
Query: 204 VVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFG 240
VV T + ++ D N Q I + GL G
Sbjct: 126 VVATQLPESTSLRLADVLWNSQ--IPLLICRTYGLVG 160
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 493 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE 552
+YD Q+ ++G Q+ LE A V ++ + A G E LKN+ L G+ G TI D + +
Sbjct: 12 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 66
Query: 553 KSNLSRQFLFRDWNIGQ 569
+ F + +IG+
Sbjct: 67 GEDAGNNFFLQRSSIGK 83
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 360 DFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGS---EEDAQKLISVATNINESLG 416
D ++S D L+L +A+D+F + GR+P + EED KL S T + G
Sbjct: 405 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 464
Query: 417 DGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 462
+ + + F A + +AA GG QEV+K + +F
Sbjct: 465 LSVM--VKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQF 508
>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|C Chain C, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 537
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 92 IDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVEL 151
+ E + RQL ++G L ++++ + G EI KNL+L G+ S T+ D V
Sbjct: 11 LKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSG 70
Query: 152 WDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSD--------FQA 203
D +NF + IGKNRA A+++ LQELN+ V S + + E L D F
Sbjct: 71 EDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE--SPENLLDNDPSFFCRFTV 128
Query: 204 VVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFG 240
VV T + ++ D N Q I + GL G
Sbjct: 129 VVATQLPESTSLRLADVLWNSQ--IPLLICRTYGLVG 163
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 493 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE 552
+YD Q+ ++G Q+ LE A V ++ + A G E LKN+ L G+ G TI D + +
Sbjct: 15 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 69
Query: 553 KSNLSRQFLFRDWNIGQ 569
+ F + +IG+
Sbjct: 70 GEDAGNNFFLQRSSIGK 86
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 360 DFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGS---EEDAQKLISVATNINESLG 416
D ++S D L+L +A+D+F + GR+P + EED KL S T + G
Sbjct: 413 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 472
Query: 417 DGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 462
+ + + F A + +AA GG QEV+K + +F
Sbjct: 473 LSVM--VKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQF 516
>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|C Chain C, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|3DBH|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBL|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBR|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 531
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 92 IDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVEL 151
+ E + RQL ++G L ++++ + G EI KNL+L G+ S T+ D V
Sbjct: 10 LKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSG 69
Query: 152 WDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSD--------FQA 203
D +NF + IGKNRA A+++ LQELN+ V S + + E L D F
Sbjct: 70 EDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE--SPENLLDNDPSFFCRFTV 127
Query: 204 VVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFG 240
VV T + ++ D N Q I + GL G
Sbjct: 128 VVATQLPESTSLRLADVLWNSQ--IPLLICRTYGLVG 162
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 493 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE 552
+YD Q+ ++G Q+ LE A V ++ + A G E LKN+ L G+ G TI D + +
Sbjct: 14 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 68
Query: 553 KSNLSRQFLFRDWNIGQ 569
+ F + +IG+
Sbjct: 69 GEDAGNNFFLQRSSIGK 85
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 360 DFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGS---EEDAQKLISVATNINESLG 416
D ++S D L+L +A+D+F + GR+P + EED KL S T + G
Sbjct: 407 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 466
Query: 417 DGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 462
+ + + F A + +AA GG QEV+K + +F
Sbjct: 467 LSVM--VKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQF 510
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 19/158 (12%)
Query: 493 RYDAQISVFGAKL--QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550
RY+ QI + G Q+ L+D++V IVG G LGC + +A GV G LT+ D D
Sbjct: 11 RYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGV-----GNLTLLDFDT 65
Query: 551 IEKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLNIEALQNRVGPETENVFDDTFWEN 610
+ SNL RQ L D +GQ INP + I + + DD
Sbjct: 66 VSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV--------NALLDDAELAA 117
Query: 611 ITC----VINALDNVNARLYVDQRCLYFQKPLLESGTL 644
+ V++ DNV R ++ C + PL+ +
Sbjct: 118 LIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAI 155
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 95 DLHSRQLAVYGRETMRRLFA---------SNILVSGMQGLGAEIAKNLILAGVKSVTLHD 145
+L +++ Y R+ + R F S +L+ G+ GLG ++ L AGV ++TL D
Sbjct: 3 ELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLD 62
Query: 146 EGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQA 203
TV L +L + SD +G+ + ++ L +N + ++ + + L +L+ A
Sbjct: 63 FDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIA 120
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 22/176 (12%)
Query: 477 LPTEPLDSTEFKPINSRYDAQI---SVFGAK---LQKKLEDAKVFIVGSGALGCEFLKNV 530
+P E +STE N+RY +GA +Q KL++AKV I+G G +G +
Sbjct: 82 IPGEYNNSTE----NNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVIL 137
Query: 531 ALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLNIEA 590
A G+ G++ + D+D IE +NL+RQ LF + ++G+ N +++
Sbjct: 138 ATSGI-----GEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSE 192
Query: 591 LQNRVGPETE--NVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTL 644
+ + T+ V + W V++A N +V++ C+ +P + +G +
Sbjct: 193 IALNINDYTDLHKVPEADIW-----VVSADHPFNLINWVNKYCVRANQPYINAGYV 243
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 170
+L + +++ G G+G ++ L +G+ + L D +E +L+ +FS++D+GKN+
Sbjct: 115 KLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKT 174
Query: 171 LASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDI 209
++L + N+ + +S + L +D V DI
Sbjct: 175 EVIKRELLKRNSEISVSEIA--LNINDYTDLHKVPEADI 211
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 22/176 (12%)
Query: 477 LPTEPLDSTEFKPINSRYD---AQISVFGAK---LQKKLEDAKVFIVGSGALGCEFLKNV 530
+P E +STE N+RY +GA +Q KL++AKV I+G G +G +
Sbjct: 79 IPGEYNNSTE----NNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVIL 134
Query: 531 ALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLNIEA 590
A G+ G++ + D+D IE +NL+RQ LF + ++G+ N +++
Sbjct: 135 ATSGI-----GEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSE 189
Query: 591 LQNRVGPETE--NVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTL 644
+ + T+ V + W V++A N +V++ C+ +P + +G +
Sbjct: 190 IALNINDYTDLHKVPEADIW-----VVSADHPFNLINWVNKYCVRANQPYINAGYV 240
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 170
+L + +++ G G+G ++ L +G+ + L D +E +L+ +FS++D+GKN+
Sbjct: 112 KLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKT 171
Query: 171 LASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDI 209
++L + N+ + +S + L +D V DI
Sbjct: 172 EVIKRELLKRNSEISVSEIA--LNINDYTDLHKVPEADI 208
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 174
+ +L+ G LG +++ LI GV+ +T D GTV + +++ D GK +A +
Sbjct: 328 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA 387
Query: 175 QKLQEL 180
L+ +
Sbjct: 388 ASLKRI 393
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 568
+++ KV ++G+G LGC + + GV K+T D+ + SN RQ L+ + G
Sbjct: 325 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 379
Query: 569 Q 569
+
Sbjct: 380 K 380
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 174
+ +L+ G LG +++ LI GV+ +T D GTV + +++ D GK +A +
Sbjct: 328 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA 387
Query: 175 QKLQEL 180
L+ +
Sbjct: 388 ASLKRI 393
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 568
+++ KV ++G+G LGC + + GV K+T D+ + SN RQ L+ + G
Sbjct: 325 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 379
Query: 569 Q 569
+
Sbjct: 380 K 380
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 174
+ +L+ G LG +++ LI GV+ +T D GTV + +++ D GK +A +
Sbjct: 327 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA 386
Query: 175 QKLQEL 180
L+ +
Sbjct: 387 ASLKRI 392
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 568
+++ KV ++G+G LGC + + GV K+T D+ + SN RQ L+ + G
Sbjct: 324 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 378
Query: 569 Q 569
+
Sbjct: 379 K 379
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 174
+ +L+ G LG +++ LI GV+ +T D GTV + +++ D GK +A +
Sbjct: 327 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDAGKPKAELAA 386
Query: 175 QKLQEL 180
L+ +
Sbjct: 387 ASLKRI 392
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLF 562
+++ KV ++G+G LGC + + GV K+T D+ + SN RQ L+
Sbjct: 324 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALY 372
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLF 562
+++ KV ++G+G LGC + + GV K+T D+ + SN RQ L+
Sbjct: 32 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALY 80
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNR---AL 171
+ +L+ G LG +++ LI GV+ +T D GTV + +++ D GK + A
Sbjct: 35 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA 94
Query: 172 ASVQKLQELNNA 183
AS++++ L +A
Sbjct: 95 ASLKRIFPLXDA 106
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLF 562
+++ KV ++G+G LGC + + GV K+T D+ + SN RQ L+
Sbjct: 32 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALY 80
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 174
+ +L+ G LG +++ LI GV+ +T D GTV + +++ D GK +A +
Sbjct: 35 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA 94
Query: 175 QKLQEL 180
L+ +
Sbjct: 95 ASLKRI 100
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 568
+++ KV ++G+G LGC + + GV K+T D+ + SN RQ L+ + G
Sbjct: 36 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 90
Query: 569 Q 569
+
Sbjct: 91 K 91
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 174
+ +L+ G LG +++ LI GV+ +T D GTV + +++ D GK +A +
Sbjct: 39 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA 98
Query: 175 QKLQEL 180
L+ +
Sbjct: 99 ASLKRI 104
>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
Length = 452
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 348 FKPLREALE-DPGDFLLSDFSKFDRPPPL-HLAFQALDKFVSELGRFPVAGSEEDA--QK 403
F+ L E + DP D + D D P + +L F + + V L FP G E +
Sbjct: 184 FQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGF-GMSQKVGHLDFFPNGGKEMPGCQKN 242
Query: 404 LISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNP 441
++S +IN + +G + LR + + A ++LNP
Sbjct: 243 ILSTIVDIN-GIWEGTQNFVACNHLRSYKYYASSILNP 279
>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3GUC|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3H8V|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
pdb|3H8V|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
Length = 292
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 16/149 (10%)
Query: 531 ALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQXXXXXXXXXXXXINPRLNIEA 590
A M CG GKL + D D +E +N++R F F+ G INP + E
Sbjct: 52 AEMLTRCG-IGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFE- 108
Query: 591 LQNRVGPETENV--FDDTFWEN-------ITCVINALDNVNARLYVDQRCLYFQKPLLES 641
+ N EN F D + V++ +DN AR+ ++ C + +ES
Sbjct: 109 VHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMES 168
Query: 642 GTL--GAKCNTQMVIPHLTENYGASRDPP 668
G + Q++IP + + + PP
Sbjct: 169 GVSENAVSGHIQLIIPGESACFACA--PP 195
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 294 FSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTN--YGTYVKGGIVTQVKQPKVLNFKPL 351
+++ G+ + DG +K Y + T+ Y ++ GG + Q K + L
Sbjct: 79 YTQQQGVLQDRDGTIIHLK----YPLNCSDPTSERWYHGHMSGGQAETLLQAKGEPWTFL 134
Query: 352 -REALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSE 398
RE+L PGDF+LS S + P K + E GR+ V G E
Sbjct: 135 VRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLE 182
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 328 YGTYVKGGIVTQVKQPKVLNFKPL-REALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFV 386
Y ++ GG + Q K + L RE+L PGDF+LS S + P K +
Sbjct: 111 YHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVM 170
Query: 387 SELGRFPVAGSE 398
E GR+ V G E
Sbjct: 171 CEGGRYTVGGLE 182
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 1007 RWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERM 1052
R IL++N L+ L+Q LK L S +CG+ ++ P+ +E +
Sbjct: 265 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 310
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 1007 RWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERM 1052
R IL++N L+ L+Q LK L S +CG+ ++ P+ +E +
Sbjct: 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 301
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 1007 RWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERM 1052
R IL++N L+ L+Q LK L S +CG+ ++ P+ +E +
Sbjct: 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 301
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 1007 RWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERM 1052
R IL++N L+ L+Q LK L S +CG+ ++ P+ +E +
Sbjct: 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 417
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 1007 RWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERM 1052
R IL++N L+ L+Q LK L S +CG+ ++ P+ +E +
Sbjct: 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 301
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 1007 RWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERM 1052
R IL++N L+ L+Q LK L S +CG+ ++ P+ +E +
Sbjct: 258 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 303
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,066,353
Number of Sequences: 62578
Number of extensions: 1357246
Number of successful extensions: 3390
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3201
Number of HSP's gapped (non-prelim): 101
length of query: 1099
length of database: 14,973,337
effective HSP length: 109
effective length of query: 990
effective length of database: 8,152,335
effective search space: 8070811650
effective search space used: 8070811650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)