Query 001331
Match_columns 1099
No_of_seqs 510 out of 3557
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 22:01:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2012 Ubiquitin activating e 100.0 2E-264 4E-269 2258.4 71.8 1005 82-1098 5-1013(1013)
2 TIGR01408 Ube1 ubiquitin-activ 100.0 6E-233 1E-237 2157.8 95.8 1005 91-1099 1-1008(1008)
3 cd01490 Ube1_repeat2 Ubiquitin 100.0 5E-120 1E-124 1043.4 40.7 430 513-1052 1-435 (435)
4 KOG2013 SMT3/SUMO-activating c 100.0 3.8E-79 8.3E-84 677.7 26.8 472 504-1060 5-499 (603)
5 cd01489 Uba2_SUMO Ubiquitin ac 100.0 5.1E-75 1.1E-79 648.7 27.1 304 513-995 1-308 (312)
6 cd01491 Ube1_repeat1 Ubiquitin 100.0 2.4E-71 5.2E-76 612.3 26.7 285 96-480 1-285 (286)
7 cd01484 E1-2_like Ubiquitin ac 100.0 4.6E-63 9.9E-68 534.1 22.5 175 513-694 1-175 (234)
8 KOG2015 NEDD8-activating compl 100.0 1.3E-58 2.8E-63 493.0 22.5 345 502-1059 31-398 (422)
9 cd01488 Uba3_RUB Ubiquitin act 100.0 1E-57 2.2E-62 504.5 20.3 249 513-967 1-259 (291)
10 cd01493 APPBP1_RUB Ubiquitin a 100.0 7.5E-55 1.6E-59 506.0 24.4 368 95-476 1-420 (425)
11 KOG2014 SMT3/SUMO-activating c 100.0 2.4E-54 5.2E-59 460.0 22.5 314 89-477 6-322 (331)
12 KOG2016 NEDD8-activating compl 100.0 1.1E-53 2.5E-58 471.7 13.5 377 93-476 6-516 (523)
13 cd01492 Aos1_SUMO Ubiquitin ac 100.0 1.4E-37 3E-42 329.5 20.0 149 95-245 2-153 (197)
14 cd01485 E1-1_like Ubiquitin ac 100.0 1E-36 2.2E-41 323.3 19.4 149 96-246 1-157 (198)
15 PRK08223 hypothetical protein; 100.0 3.2E-36 7E-41 331.2 16.2 181 491-681 7-202 (287)
16 TIGR02356 adenyl_thiF thiazole 100.0 6.3E-36 1.4E-40 318.5 14.4 174 493-675 1-177 (202)
17 cd00757 ThiF_MoeB_HesA_family 100.0 6E-35 1.3E-39 317.0 16.7 164 493-665 1-166 (228)
18 PRK05690 molybdopterin biosynt 100.0 6.3E-35 1.4E-39 319.4 14.6 165 492-665 11-178 (245)
19 PRK07411 hypothetical protein; 100.0 9.8E-35 2.1E-39 337.7 14.1 175 492-675 17-195 (390)
20 PRK08328 hypothetical protein; 100.0 1.3E-34 2.8E-39 314.4 13.4 164 492-664 8-172 (231)
21 PRK05597 molybdopterin biosynt 100.0 3.2E-34 7E-39 329.7 14.2 176 492-676 7-186 (355)
22 TIGR02355 moeB molybdopterin s 100.0 8.1E-34 1.7E-38 309.4 15.3 166 491-665 2-170 (240)
23 cd01492 Aos1_SUMO Ubiquitin ac 100.0 1.6E-33 3.6E-38 298.5 14.6 152 492-653 2-153 (197)
24 PRK05600 thiamine biosynthesis 100.0 2.1E-33 4.5E-38 323.7 14.3 164 492-664 20-188 (370)
25 cd01493 APPBP1_RUB Ubiquitin a 100.0 9.8E-32 2.1E-36 312.9 27.1 186 492-687 1-186 (425)
26 PRK07878 molybdopterin biosynt 100.0 4.5E-33 9.7E-38 324.5 15.6 164 492-664 21-190 (392)
27 cd01491 Ube1_repeat1 Ubiquitin 100.0 4.4E-33 9.5E-38 308.3 14.0 182 493-690 1-184 (286)
28 cd01485 E1-1_like Ubiquitin ac 100.0 6.4E-33 1.4E-37 294.3 13.7 155 493-654 1-157 (198)
29 PRK07878 molybdopterin biosynt 100.0 5.8E-32 1.3E-36 315.2 22.9 155 89-245 15-175 (392)
30 PRK12475 thiamine/molybdopteri 100.0 1.2E-32 2.6E-37 314.0 15.1 165 492-665 3-171 (338)
31 cd01489 Uba2_SUMO Ubiquitin ac 100.0 6.1E-32 1.3E-36 302.6 18.7 278 116-468 1-284 (312)
32 PRK07688 thiamine/molybdopteri 100.0 2.4E-32 5.2E-37 311.7 14.9 166 491-665 2-171 (339)
33 PRK08223 hypothetical protein; 100.0 6.3E-31 1.4E-35 289.4 18.0 155 91-247 4-164 (287)
34 PRK05690 molybdopterin biosynt 100.0 9.4E-31 2E-35 286.5 17.3 153 90-244 6-164 (245)
35 TIGR02356 adenyl_thiF thiazole 100.0 6.2E-31 1.3E-35 280.2 15.3 149 96-246 1-155 (202)
36 PRK08762 molybdopterin biosynt 100.0 5.4E-31 1.2E-35 306.2 15.5 164 492-664 114-283 (376)
37 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 5.4E-31 1.2E-35 285.1 13.1 161 509-678 9-193 (244)
38 cd00757 ThiF_MoeB_HesA_family 100.0 1.6E-30 3.4E-35 282.4 16.8 149 96-246 1-155 (228)
39 COG0476 ThiF Dinucleotide-util 100.0 7.9E-31 1.7E-35 289.5 14.6 166 492-666 9-177 (254)
40 PF09358 UBA_e1_C: Ubiquitin-a 100.0 1.3E-31 2.7E-36 262.0 6.4 123 972-1094 1-125 (125)
41 PRK07411 hypothetical protein; 100.0 2.5E-30 5.5E-35 300.8 18.4 156 88-245 10-171 (390)
42 KOG2017 Molybdopterin synthase 100.0 1.7E-31 3.6E-36 288.8 6.2 176 481-669 38-216 (427)
43 PRK05597 molybdopterin biosynt 100.0 3.3E-30 7.1E-35 296.6 17.3 152 91-244 3-160 (355)
44 PRK14851 hypothetical protein; 100.0 1.5E-30 3.2E-35 318.1 15.1 166 491-666 23-190 (679)
45 PRK08328 hypothetical protein; 100.0 8.6E-30 1.9E-34 276.7 18.3 155 91-247 4-163 (231)
46 cd01488 Uba3_RUB Ubiquitin act 100.0 2.4E-29 5.3E-34 278.8 21.8 265 116-478 1-275 (291)
47 PRK14852 hypothetical protein; 100.0 3.6E-30 7.8E-35 317.4 15.0 167 490-666 311-479 (989)
48 TIGR02355 moeB molybdopterin s 100.0 8.4E-30 1.8E-34 277.9 15.7 148 95-244 3-156 (240)
49 PRK05600 thiamine biosynthesis 100.0 1.7E-29 3.7E-34 291.2 18.3 155 89-245 14-174 (370)
50 PRK15116 sulfur acceptor prote 100.0 4.5E-29 9.7E-34 274.0 14.7 164 491-663 10-175 (268)
51 cd01484 E1-2_like Ubiquitin ac 100.0 2.8E-27 6E-32 256.1 23.2 227 116-454 1-233 (234)
52 PRK07688 thiamine/molybdopteri 100.0 7.1E-28 1.5E-32 275.0 17.9 150 95-246 3-160 (339)
53 PRK12475 thiamine/molybdopteri 100.0 6.8E-28 1.5E-32 275.1 17.5 151 94-246 2-160 (338)
54 cd00755 YgdL_like Family of ac 100.0 3.1E-28 6.7E-33 263.2 13.7 155 501-663 1-156 (231)
55 PRK08644 thiamine biosynthesis 100.0 5.6E-28 1.2E-32 259.0 14.3 154 492-655 9-163 (212)
56 PRK07877 hypothetical protein; 100.0 4.2E-28 9.1E-33 297.0 14.7 182 467-664 66-251 (722)
57 TIGR01408 Ube1 ubiquitin-activ 99.9 1.7E-27 3.8E-32 301.2 18.1 160 93-254 398-570 (1008)
58 PF00899 ThiF: ThiF family; I 99.9 1.3E-27 2.8E-32 238.8 12.3 135 510-653 1-135 (135)
59 PRK15116 sulfur acceptor prote 99.9 4.4E-27 9.5E-32 258.3 16.4 143 90-234 6-153 (268)
60 COG0476 ThiF Dinucleotide-util 99.9 4.9E-27 1.1E-31 259.3 16.6 158 89-248 3-166 (254)
61 PTZ00245 ubiquitin activating 99.9 3.1E-27 6.8E-32 249.8 13.3 122 91-215 3-124 (287)
62 PRK14852 hypothetical protein; 99.9 5.4E-27 1.2E-31 289.5 17.0 167 79-247 294-469 (989)
63 TIGR01381 E1_like_apg7 E1-like 99.9 4.5E-27 9.7E-32 278.8 15.1 156 491-653 319-490 (664)
64 COG1179 Dinucleotide-utilizing 99.9 4.5E-27 9.8E-32 246.5 12.0 161 491-659 10-171 (263)
65 cd01490 Ube1_repeat2 Ubiquitin 99.9 8.7E-26 1.9E-30 261.8 23.5 131 116-248 1-144 (435)
66 PRK08762 molybdopterin biosynt 99.9 2.3E-26 4.9E-31 267.6 17.9 154 90-245 109-268 (376)
67 PRK14851 hypothetical protein; 99.9 2.2E-26 4.7E-31 281.7 16.6 156 89-246 18-179 (679)
68 KOG2015 NEDD8-activating compl 99.9 1.6E-25 3.5E-30 240.2 20.1 275 104-478 30-319 (422)
69 KOG2013 SMT3/SUMO-activating c 99.9 1.1E-26 2.3E-31 260.1 10.9 362 107-474 5-418 (603)
70 cd01483 E1_enzyme_family Super 99.9 3.8E-26 8.1E-31 230.4 13.0 133 513-654 1-133 (143)
71 TIGR03603 cyclo_dehy_ocin bact 99.9 1.2E-26 2.7E-31 262.2 9.0 149 492-664 53-207 (318)
72 cd01486 Apg7 Apg7 is an E1-lik 99.9 6.4E-26 1.4E-30 249.4 13.8 133 513-653 1-150 (307)
73 PF00899 ThiF: ThiF family; I 99.9 4.7E-25 1E-29 220.3 16.8 130 113-244 1-134 (135)
74 KOG2017 Molybdopterin synthase 99.9 3.6E-26 7.9E-31 247.6 7.3 169 89-259 39-216 (427)
75 cd01487 E1_ThiF_like E1_ThiF_l 99.9 3.8E-25 8.2E-30 230.3 13.3 142 513-664 1-145 (174)
76 PRK08644 thiamine biosynthesis 99.9 7.5E-25 1.6E-29 234.9 15.8 145 94-241 8-157 (212)
77 cd00755 YgdL_like Family of ac 99.9 8.1E-25 1.7E-29 236.7 15.0 132 104-237 1-137 (231)
78 cd01483 E1_enzyme_family Super 99.9 1.2E-24 2.7E-29 219.4 15.2 129 116-246 1-133 (143)
79 TIGR02354 thiF_fam2 thiamine b 99.9 3.4E-24 7.4E-29 227.7 14.6 157 496-663 6-167 (200)
80 PTZ00245 ubiquitin activating 99.9 1E-23 2.2E-28 223.3 11.5 113 492-620 7-119 (287)
81 PRK07877 hypothetical protein; 99.9 4.4E-23 9.6E-28 253.0 16.0 148 90-243 83-235 (722)
82 PRK06153 hypothetical protein; 99.9 2.5E-23 5.4E-28 235.5 12.6 129 504-644 169-300 (393)
83 COG1179 Dinucleotide-utilizing 99.9 5.2E-23 1.1E-27 216.1 12.8 145 91-237 7-156 (263)
84 cd01486 Apg7 Apg7 is an E1-lik 99.9 1.2E-21 2.6E-26 215.7 14.8 129 116-247 1-152 (307)
85 KOG2014 SMT3/SUMO-activating c 99.9 6.6E-22 1.4E-26 212.3 11.4 153 492-654 12-164 (331)
86 cd01487 E1_ThiF_like E1_ThiF_l 99.9 2E-21 4.4E-26 202.3 13.8 127 116-245 1-132 (174)
87 KOG2336 Molybdopterin biosynth 99.9 1.1E-21 2.4E-26 206.7 11.0 165 492-665 60-240 (422)
88 TIGR02354 thiF_fam2 thiamine b 99.9 3.5E-21 7.7E-26 204.6 15.0 138 102-243 9-151 (200)
89 TIGR01381 E1_like_apg7 E1-like 99.9 3.5E-21 7.7E-26 228.9 15.8 141 105-248 329-493 (664)
90 TIGR03603 cyclo_dehy_ocin bact 99.9 2.5E-21 5.4E-26 219.2 13.4 145 90-247 48-198 (318)
91 KOG2016 NEDD8-activating compl 99.8 8E-21 1.7E-25 211.8 11.8 160 490-656 6-165 (523)
92 PF02134 UBACT: Repeat in ubiq 99.8 2.7E-21 5.8E-26 168.9 5.3 66 898-965 1-66 (67)
93 KOG2018 Predicted dinucleotide 99.8 2E-20 4.3E-25 200.4 9.8 158 492-657 55-213 (430)
94 PRK06153 hypothetical protein; 99.8 4.1E-19 9E-24 201.4 14.4 126 106-235 168-299 (393)
95 KOG2012 Ubiquitin activating e 99.8 9.7E-20 2.1E-24 215.1 7.7 152 94-247 410-574 (1013)
96 TIGR03736 PRTRC_ThiF PRTRC sys 99.7 6.4E-18 1.4E-22 183.5 13.0 129 112-244 9-151 (244)
97 KOG2018 Predicted dinucleotide 99.7 1E-17 2.3E-22 179.7 10.2 139 94-234 54-197 (430)
98 PF10585 UBA_e1_thiolCys: Ubiq 99.6 4.2E-16 9.1E-21 124.6 0.6 45 656-700 1-45 (45)
99 KOG2336 Molybdopterin biosynth 99.5 2.3E-14 5E-19 151.9 10.6 156 89-247 54-230 (422)
100 TIGR03693 ocin_ThiF_like putat 99.5 1.1E-13 2.4E-18 163.8 9.5 146 492-663 104-260 (637)
101 KOG2337 Ubiquitin activating E 99.4 2.7E-12 5.8E-17 146.3 14.5 191 505-702 334-567 (669)
102 TIGR03693 ocin_ThiF_like putat 99.1 3.5E-10 7.7E-15 134.6 13.5 140 91-244 100-251 (637)
103 KOG2337 Ubiquitin activating E 99.1 2.9E-10 6.3E-15 130.0 10.4 138 108-248 334-495 (669)
104 PF02134 UBACT: Repeat in ubiq 98.2 6E-07 1.3E-11 78.8 2.1 50 797-851 1-50 (67)
105 COG4015 Predicted dinucleotide 97.9 4.2E-05 9.1E-10 76.6 9.1 121 114-241 18-146 (217)
106 PF08825 E2_bind: E2 binding d 97.6 6E-05 1.3E-09 69.0 3.8 62 1008-1069 1-74 (84)
107 PRK06718 precorrin-2 dehydroge 97.5 0.0015 3.2E-08 70.2 13.7 96 111-235 7-102 (202)
108 TIGR03882 cyclo_dehyd_2 bacter 97.4 0.00017 3.7E-09 76.8 5.6 60 502-561 96-160 (193)
109 TIGR01470 cysG_Nterm siroheme 97.4 0.0026 5.6E-08 68.5 14.0 104 112-243 7-110 (205)
110 COG1748 LYS9 Saccharopine dehy 97.2 0.0009 1.9E-08 78.0 8.2 100 512-644 2-101 (389)
111 PF01488 Shikimate_DH: Shikima 97.2 0.0012 2.6E-08 66.3 7.9 78 110-210 8-85 (135)
112 PRK06719 precorrin-2 dehydroge 97.1 0.0088 1.9E-07 61.7 13.9 86 111-225 10-95 (157)
113 PRK12549 shikimate 5-dehydroge 97.0 0.002 4.3E-08 72.9 8.4 76 509-618 125-200 (284)
114 PF13241 NAD_binding_7: Putati 96.9 0.002 4.3E-08 61.6 6.8 89 111-234 4-92 (103)
115 PRK06718 precorrin-2 dehydroge 96.9 0.0034 7.5E-08 67.4 9.3 91 508-638 7-97 (202)
116 COG1748 LYS9 Saccharopine dehy 96.9 0.0039 8.4E-08 72.8 10.1 98 115-239 2-104 (389)
117 PRK12549 shikimate 5-dehydroge 96.9 0.0034 7.4E-08 71.0 9.2 76 112-208 125-200 (284)
118 PRK05562 precorrin-2 dehydroge 96.9 0.017 3.7E-07 62.8 14.1 100 111-238 22-121 (223)
119 COG4015 Predicted dinucleotide 96.9 0.0032 6.9E-08 63.5 7.5 126 511-649 18-146 (217)
120 PF01488 Shikimate_DH: Shikima 96.8 0.0029 6.3E-08 63.5 7.2 79 507-621 8-86 (135)
121 PRK06719 precorrin-2 dehydroge 96.5 0.012 2.6E-07 60.7 9.0 85 508-634 10-94 (157)
122 TIGR01470 cysG_Nterm siroheme 96.4 0.01 2.2E-07 64.0 8.6 95 509-642 7-101 (205)
123 PF13241 NAD_binding_7: Putati 96.4 0.0042 9.1E-08 59.3 5.1 87 508-640 4-90 (103)
124 PRK05562 precorrin-2 dehydroge 95.9 0.024 5.2E-07 61.6 8.4 97 508-643 22-118 (223)
125 PRK10637 cysG siroheme synthas 95.9 0.088 1.9E-06 63.7 13.8 104 111-242 9-112 (457)
126 PF03435 Saccharop_dh: Sacchar 95.9 0.0086 1.9E-07 70.6 5.0 98 514-642 1-98 (386)
127 COG1648 CysG Siroheme synthase 95.9 0.052 1.1E-06 58.7 10.4 100 111-238 9-108 (210)
128 PRK14027 quinate/shikimate deh 95.6 0.03 6.5E-07 63.3 7.9 78 112-208 125-202 (283)
129 PRK12548 shikimate 5-dehydroge 94.9 0.07 1.5E-06 60.6 7.9 84 509-618 124-207 (289)
130 PRK14027 quinate/shikimate deh 94.8 0.058 1.3E-06 61.1 7.1 78 509-618 125-202 (283)
131 TIGR01809 Shik-DH-AROM shikima 94.8 0.061 1.3E-06 60.9 7.3 75 112-209 123-199 (282)
132 PF00056 Ldh_1_N: lactate/mala 94.7 0.1 2.2E-06 52.8 7.8 74 115-209 1-78 (141)
133 COG0169 AroE Shikimate 5-dehyd 94.7 0.092 2E-06 59.3 8.0 75 113-209 125-199 (283)
134 COG0373 HemA Glutamyl-tRNA red 94.6 0.053 1.1E-06 63.9 6.3 75 112-212 176-250 (414)
135 PRK00258 aroE shikimate 5-dehy 94.6 0.11 2.3E-06 58.8 8.4 75 111-209 120-194 (278)
136 PRK12548 shikimate 5-dehydroge 94.6 0.12 2.6E-06 58.7 8.8 59 112-186 124-182 (289)
137 PRK14106 murD UDP-N-acetylmura 94.5 0.13 2.9E-06 61.8 9.6 127 112-268 3-129 (450)
138 PRK07819 3-hydroxybutyryl-CoA 94.3 0.098 2.1E-06 59.3 7.4 171 512-706 6-185 (286)
139 TIGR01809 Shik-DH-AROM shikima 94.3 0.079 1.7E-06 60.0 6.5 34 509-547 123-156 (282)
140 TIGR03882 cyclo_dehyd_2 bacter 94.2 0.16 3.5E-06 54.2 8.4 86 101-242 92-178 (193)
141 PF03435 Saccharop_dh: Sacchar 94.2 0.16 3.5E-06 60.0 9.2 90 117-232 1-96 (386)
142 PRK13940 glutamyl-tRNA reducta 94.2 0.071 1.5E-06 63.5 6.1 77 111-212 178-254 (414)
143 COG1648 CysG Siroheme synthase 94.1 0.068 1.5E-06 57.8 5.2 93 508-640 9-102 (210)
144 PF05237 MoeZ_MoeB: MoeZ/MoeB 94.0 0.037 8.1E-07 50.9 2.5 41 436-476 23-64 (84)
145 PF01113 DapB_N: Dihydrodipico 93.9 0.12 2.7E-06 51.0 6.3 99 513-647 2-102 (124)
146 cd05291 HicDH_like L-2-hydroxy 93.9 0.17 3.6E-06 58.0 8.1 72 115-209 1-77 (306)
147 PF03446 NAD_binding_2: NAD bi 93.8 0.14 2.9E-06 53.1 6.7 111 115-238 2-123 (163)
148 PRK00258 aroE shikimate 5-dehy 93.7 0.15 3.3E-06 57.5 7.4 36 508-548 120-155 (278)
149 PRK14106 murD UDP-N-acetylmura 93.7 0.13 2.9E-06 61.9 7.4 36 509-550 3-38 (450)
150 PRK07066 3-hydroxybutyryl-CoA 93.6 0.19 4.1E-06 57.9 7.9 171 512-706 8-182 (321)
151 COG0373 HemA Glutamyl-tRNA red 93.5 0.098 2.1E-06 61.7 5.5 75 508-621 175-249 (414)
152 PRK12749 quinate/shikimate deh 93.5 0.26 5.7E-06 56.0 8.8 52 112-179 122-173 (288)
153 PRK13940 glutamyl-tRNA reducta 93.5 0.11 2.4E-06 61.9 6.0 75 508-620 178-252 (414)
154 PRK04148 hypothetical protein; 93.4 0.66 1.4E-05 46.6 10.2 89 113-232 16-107 (134)
155 cd01065 NAD_bind_Shikimate_DH 93.3 0.15 3.2E-06 51.8 5.9 36 509-549 17-52 (155)
156 PRK12749 quinate/shikimate deh 93.3 0.21 4.6E-06 56.7 7.7 83 509-618 122-204 (288)
157 COG0569 TrkA K+ transport syst 93.3 0.28 6.1E-06 53.7 8.4 96 512-640 1-97 (225)
158 PF00070 Pyr_redox: Pyridine n 93.3 0.089 1.9E-06 47.6 3.7 31 513-549 1-31 (80)
159 PRK10637 cysG siroheme synthas 93.2 0.22 4.9E-06 60.2 8.1 93 508-639 9-101 (457)
160 PF02254 TrkA_N: TrkA-N domain 93.2 0.94 2E-05 43.6 11.0 87 117-231 1-93 (116)
161 PF02737 3HCDH_N: 3-hydroxyacy 93.2 0.05 1.1E-06 57.4 2.2 165 513-703 1-174 (180)
162 PF14732 UAE_UbL: Ubiquitin/SU 93.1 0.055 1.2E-06 50.2 2.1 49 1011-1059 6-56 (87)
163 PLN00203 glutamyl-tRNA reducta 93.0 0.19 4.1E-06 61.5 7.1 76 112-210 264-339 (519)
164 PF02826 2-Hacid_dh_C: D-isome 93.0 0.035 7.6E-07 58.4 0.7 93 506-617 31-126 (178)
165 PRK05808 3-hydroxybutyryl-CoA 92.9 0.44 9.5E-06 53.8 9.5 33 512-550 4-36 (282)
166 KOG4169 15-hydroxyprostaglandi 92.9 0.18 3.9E-06 54.5 5.8 84 509-618 3-91 (261)
167 cd01080 NAD_bind_m-THF_DH_Cycl 92.6 0.17 3.8E-06 52.8 5.3 34 508-547 41-75 (168)
168 cd00300 LDH_like L-lactate deh 92.6 0.83 1.8E-05 52.2 11.2 71 117-209 1-75 (300)
169 cd05213 NAD_bind_Glutamyl_tRNA 92.6 0.37 8E-06 55.4 8.4 83 112-220 176-258 (311)
170 cd01065 NAD_bind_Shikimate_DH 92.6 0.41 8.9E-06 48.5 7.9 35 112-146 17-51 (155)
171 PRK00066 ldh L-lactate dehydro 92.4 0.4 8.6E-06 55.2 8.4 76 113-209 5-82 (315)
172 COG0569 TrkA K+ transport syst 92.4 0.86 1.9E-05 49.9 10.6 105 115-247 1-113 (225)
173 PRK05708 2-dehydropantoate 2-r 92.3 0.64 1.4E-05 53.2 9.8 33 114-147 2-34 (305)
174 PRK09260 3-hydroxybutyryl-CoA 92.1 0.12 2.7E-06 58.4 3.7 33 512-550 2-34 (288)
175 TIGR01035 hemA glutamyl-tRNA r 92.1 0.37 7.9E-06 57.7 7.8 36 111-146 177-212 (417)
176 PRK04148 hypothetical protein; 92.0 0.9 2E-05 45.6 9.2 91 510-639 16-106 (134)
177 KOG4169 15-hydroxyprostaglandi 92.0 0.4 8.7E-06 51.8 7.0 62 112-194 3-65 (261)
178 COG0169 AroE Shikimate 5-dehyd 91.9 0.38 8.3E-06 54.3 7.3 74 510-618 125-198 (283)
179 PF01118 Semialdhyde_dh: Semia 91.8 0.43 9.4E-06 46.8 6.7 109 513-656 1-112 (121)
180 PRK06130 3-hydroxybutyryl-CoA 91.6 0.66 1.4E-05 53.1 9.0 33 512-550 5-37 (311)
181 cd05290 LDH_3 A subgroup of L- 91.6 0.67 1.4E-05 53.2 8.9 73 116-209 1-77 (307)
182 cd05311 NAD_bind_2_malic_enz N 91.6 0.21 4.5E-06 54.7 4.6 38 111-148 22-61 (226)
183 cd05311 NAD_bind_2_malic_enz N 91.5 0.16 3.4E-06 55.7 3.6 37 508-549 22-60 (226)
184 PLN02602 lactate dehydrogenase 91.4 0.57 1.2E-05 54.7 8.1 73 115-209 38-114 (350)
185 cd05213 NAD_bind_Glutamyl_tRNA 91.3 0.46 1E-05 54.6 7.2 81 509-628 176-256 (311)
186 PLN02819 lysine-ketoglutarate 91.2 0.53 1.1E-05 61.8 8.5 104 510-642 568-679 (1042)
187 cd05293 LDH_1 A subgroup of L- 91.1 0.65 1.4E-05 53.4 8.2 74 114-209 3-80 (312)
188 cd05291 HicDH_like L-2-hydroxy 90.9 0.52 1.1E-05 54.0 7.2 34 512-549 1-34 (306)
189 PF10585 UBA_e1_thiolCys: Ubiq 90.8 0.22 4.8E-06 40.3 2.8 23 741-763 23-45 (45)
190 PRK08293 3-hydroxybutyryl-CoA 90.7 1.5 3.3E-05 49.6 10.7 33 512-550 4-36 (287)
191 PRK05476 S-adenosyl-L-homocyst 90.7 0.6 1.3E-05 55.7 7.6 36 509-550 210-245 (425)
192 PRK01710 murD UDP-N-acetylmura 90.7 0.96 2.1E-05 54.8 9.6 96 111-232 11-106 (458)
193 cd01078 NAD_bind_H4MPT_DH NADP 90.4 0.77 1.7E-05 48.8 7.5 83 508-621 25-108 (194)
194 PF00056 Ldh_1_N: lactate/mala 90.3 0.73 1.6E-05 46.6 6.9 75 512-619 1-78 (141)
195 PRK07819 3-hydroxybutyryl-CoA 90.3 1.1 2.3E-05 50.9 9.0 34 115-149 6-39 (286)
196 PRK01438 murD UDP-N-acetylmura 90.1 1.1 2.4E-05 54.5 9.6 128 112-268 14-143 (480)
197 cd05290 LDH_3 A subgroup of L- 90.1 0.73 1.6E-05 52.9 7.4 31 513-547 1-31 (307)
198 PF03446 NAD_binding_2: NAD bi 90.1 0.99 2.1E-05 46.7 7.8 30 512-547 2-31 (163)
199 PRK00141 murD UDP-N-acetylmura 90.1 0.92 2E-05 55.2 8.7 95 107-232 8-103 (473)
200 cd01078 NAD_bind_H4MPT_DH NADP 90.0 1.2 2.5E-05 47.4 8.5 78 111-209 25-106 (194)
201 PRK00066 ldh L-lactate dehydro 90.0 0.74 1.6E-05 53.0 7.4 34 511-548 6-39 (315)
202 PRK09599 6-phosphogluconate de 89.9 0.9 1.9E-05 51.9 8.0 112 116-238 2-123 (301)
203 COG0111 SerA Phosphoglycerate 89.9 0.39 8.4E-06 55.5 5.0 90 508-617 139-232 (324)
204 PRK14192 bifunctional 5,10-met 89.6 0.5 1.1E-05 53.5 5.5 34 508-547 156-190 (283)
205 PF03807 F420_oxidored: NADP o 89.5 2.1 4.6E-05 39.7 8.8 78 116-220 1-81 (96)
206 PRK05808 3-hydroxybutyryl-CoA 89.3 2 4.4E-05 48.4 10.1 33 115-148 4-36 (282)
207 PTZ00117 malate dehydrogenase; 89.1 0.93 2E-05 52.3 7.4 35 113-147 4-38 (319)
208 TIGR02992 ectoine_eutC ectoine 89.1 1.3 2.8E-05 51.3 8.5 75 114-210 129-204 (326)
209 cd01075 NAD_bind_Leu_Phe_Val_D 89.1 2.1 4.5E-05 46.0 9.5 36 111-147 25-60 (200)
210 PRK00045 hemA glutamyl-tRNA re 89.0 0.62 1.3E-05 55.9 6.1 36 112-147 180-215 (423)
211 PRK00048 dihydrodipicolinate r 89.0 1.1 2.4E-05 50.1 7.6 92 512-647 2-95 (257)
212 PRK06197 short chain dehydroge 89.0 0.87 1.9E-05 51.7 7.0 37 507-549 12-49 (306)
213 PF00070 Pyr_redox: Pyridine n 89.0 1.8 4E-05 38.9 7.7 54 116-181 1-54 (80)
214 PRK08618 ornithine cyclodeamin 88.9 1.4 3E-05 51.0 8.7 161 437-639 49-218 (325)
215 PF02737 3HCDH_N: 3-hydroxyacy 88.9 0.75 1.6E-05 48.5 5.9 33 116-149 1-33 (180)
216 PRK07063 short chain dehydroge 88.9 1.2 2.6E-05 49.0 7.9 65 508-597 4-69 (260)
217 PRK06130 3-hydroxybutyryl-CoA 88.9 2.4 5.2E-05 48.5 10.5 32 115-147 5-36 (311)
218 PRK09496 trkA potassium transp 88.7 1.7 3.7E-05 52.3 9.6 94 112-233 229-328 (453)
219 PRK05854 short chain dehydroge 88.6 1.1 2.4E-05 51.3 7.6 35 509-549 12-47 (313)
220 TIGR00507 aroE shikimate 5-deh 88.6 1.2 2.7E-05 49.9 7.8 33 509-547 115-147 (270)
221 PRK08410 2-hydroxyacid dehydro 88.6 0.87 1.9E-05 52.3 6.7 87 508-617 142-231 (311)
222 TIGR00507 aroE shikimate 5-deh 88.5 1.4 3E-05 49.5 8.2 33 113-146 116-148 (270)
223 PRK13243 glyoxylate reductase; 88.5 0.75 1.6E-05 53.4 6.1 35 508-548 147-181 (333)
224 PRK15469 ghrA bifunctional gly 88.4 0.9 1.9E-05 52.3 6.6 34 509-548 134-167 (312)
225 PRK06197 short chain dehydroge 88.4 1.4 3.1E-05 50.0 8.2 42 104-146 6-48 (306)
226 cd00401 AdoHcyase S-adenosyl-L 88.3 1.5 3.3E-05 52.2 8.5 36 509-550 200-235 (413)
227 PLN00203 glutamyl-tRNA reducta 88.3 0.81 1.8E-05 56.1 6.4 34 509-547 264-297 (519)
228 PRK07574 formate dehydrogenase 88.2 0.61 1.3E-05 55.1 5.2 35 508-548 189-223 (385)
229 PRK07066 3-hydroxybutyryl-CoA 88.2 0.89 1.9E-05 52.5 6.4 109 115-238 8-122 (321)
230 PF01210 NAD_Gly3P_dh_N: NAD-d 88.2 1.3 2.8E-05 45.6 6.9 96 513-639 1-100 (157)
231 PRK14619 NAD(P)H-dependent gly 88.1 1.3 2.7E-05 50.9 7.5 33 511-549 4-36 (308)
232 PRK06035 3-hydroxyacyl-CoA deh 88.1 1.2 2.5E-05 50.6 7.2 33 512-550 4-36 (291)
233 PRK03562 glutathione-regulated 88.1 1.5 3.2E-05 55.3 8.8 88 114-229 400-493 (621)
234 PRK06487 glycerate dehydrogena 88.1 0.9 1.9E-05 52.4 6.3 35 508-548 145-179 (317)
235 PTZ00082 L-lactate dehydrogena 87.9 1.3 2.9E-05 51.1 7.6 36 112-147 4-39 (321)
236 cd00401 AdoHcyase S-adenosyl-L 87.8 2.1 4.6E-05 51.1 9.3 64 81-148 166-235 (413)
237 PRK07530 3-hydroxybutyryl-CoA 87.8 5 0.00011 45.5 12.1 33 114-147 4-36 (292)
238 PRK03659 glutathione-regulated 87.7 1.6 3.5E-05 54.8 8.7 90 114-231 400-495 (601)
239 PLN03209 translocon at the inn 87.7 2.2 4.8E-05 52.7 9.6 33 510-548 79-112 (576)
240 PRK02705 murD UDP-N-acetylmura 87.6 2.4 5.2E-05 51.2 9.9 126 115-268 1-130 (459)
241 PRK09242 tropinone reductase; 87.5 1.9 4.2E-05 47.3 8.4 65 508-597 6-71 (257)
242 PRK07502 cyclohexadienyl dehyd 87.5 2.3 5.1E-05 48.6 9.3 34 114-147 6-40 (307)
243 PRK11908 NAD-dependent epimera 87.3 2.5 5.3E-05 49.0 9.5 31 512-548 2-34 (347)
244 PRK06932 glycerate dehydrogena 87.3 0.77 1.7E-05 52.9 5.2 35 508-548 144-178 (314)
245 TIGR01759 MalateDH-SF1 malate 87.2 1.3 2.7E-05 51.3 6.8 76 115-209 4-88 (323)
246 PF02056 Glyco_hydro_4: Family 87.2 1.6 3.5E-05 46.2 7.1 111 513-649 1-114 (183)
247 PRK07831 short chain dehydroge 87.0 2.1 4.5E-05 47.3 8.3 33 509-547 15-49 (262)
248 cd05191 NAD_bind_amino_acid_DH 87.0 0.7 1.5E-05 42.5 3.8 38 508-550 20-57 (86)
249 PRK06141 ornithine cyclodeamin 87.0 1.9 4E-05 49.7 8.1 77 111-210 122-199 (314)
250 PRK11880 pyrroline-5-carboxyla 86.9 0.97 2.1E-05 50.5 5.6 33 512-547 3-35 (267)
251 PRK07634 pyrroline-5-carboxyla 86.9 3 6.4E-05 45.8 9.4 81 113-220 3-86 (245)
252 PRK15438 erythronate-4-phospha 86.8 1.6 3.5E-05 51.4 7.5 88 508-618 113-207 (378)
253 PRK07062 short chain dehydroge 86.8 2.2 4.8E-05 47.0 8.4 64 509-597 6-70 (265)
254 PRK05476 S-adenosyl-L-homocyst 86.8 2.6 5.7E-05 50.4 9.3 37 111-148 209-245 (425)
255 PLN02206 UDP-glucuronate decar 86.8 3.2 6.9E-05 50.2 10.2 104 113-241 118-239 (442)
256 PRK14175 bifunctional 5,10-met 86.8 1.2 2.6E-05 50.4 6.2 34 508-547 155-189 (286)
257 cd05191 NAD_bind_amino_acid_DH 86.7 1.1 2.4E-05 41.2 4.9 38 110-147 19-56 (86)
258 COG0039 Mdh Malate/lactate deh 86.7 1.1 2.5E-05 51.1 6.0 33 115-147 1-34 (313)
259 COG0300 DltE Short-chain dehyd 86.7 2 4.3E-05 48.2 7.8 65 509-599 4-69 (265)
260 PLN03139 formate dehydrogenase 86.7 0.7 1.5E-05 54.6 4.5 35 508-548 196-230 (386)
261 PRK07340 ornithine cyclodeamin 86.6 1.7 3.7E-05 49.8 7.5 77 111-211 122-199 (304)
262 cd05293 LDH_1 A subgroup of L- 86.6 1.9 4.1E-05 49.6 7.8 34 511-548 3-36 (312)
263 COG0771 MurD UDP-N-acetylmuram 86.6 1.7 3.8E-05 52.1 7.7 92 112-231 5-97 (448)
264 TIGR00936 ahcY adenosylhomocys 86.6 1.9 4.2E-05 51.2 8.0 36 509-550 193-228 (406)
265 PTZ00325 malate dehydrogenase; 86.5 1.4 3.1E-05 50.8 6.8 77 112-209 6-85 (321)
266 PF01113 DapB_N: Dihydrodipico 86.4 2.8 6E-05 41.5 7.9 93 116-233 2-97 (124)
267 PF03807 F420_oxidored: NADP o 86.4 0.77 1.7E-05 42.7 3.8 90 513-640 1-92 (96)
268 TIGR00872 gnd_rel 6-phosphoglu 86.4 1.6 3.4E-05 49.9 7.0 111 116-237 2-121 (298)
269 PLN02819 lysine-ketoglutarate 86.3 1.8 3.9E-05 57.1 8.2 95 113-233 568-678 (1042)
270 TIGR00872 gnd_rel 6-phosphoglu 86.3 0.78 1.7E-05 52.3 4.5 32 513-550 2-33 (298)
271 PRK06436 glycerate dehydrogena 86.1 0.92 2E-05 51.9 5.0 36 508-549 119-154 (303)
272 PRK00257 erythronate-4-phospha 86.1 1 2.2E-05 53.2 5.4 35 508-548 113-147 (381)
273 PRK06522 2-dehydropantoate 2-r 86.1 4.3 9.4E-05 45.9 10.4 30 116-146 2-31 (304)
274 PRK04308 murD UDP-N-acetylmura 86.1 2.9 6.3E-05 50.4 9.5 94 112-232 3-96 (445)
275 PF02254 TrkA_N: TrkA-N domain 86.1 2.2 4.8E-05 41.0 6.9 85 514-633 1-85 (116)
276 PRK09599 6-phosphogluconate de 86.0 1.1 2.4E-05 51.1 5.5 118 513-646 2-123 (301)
277 PRK10537 voltage-gated potassi 85.9 2 4.4E-05 51.0 7.8 93 109-231 235-333 (393)
278 PLN02545 3-hydroxybutyryl-CoA 85.8 3.5 7.7E-05 46.8 9.5 33 115-148 5-37 (295)
279 COG1086 Predicted nucleoside-d 85.8 3.1 6.7E-05 50.8 9.2 87 504-617 243-332 (588)
280 PRK15469 ghrA bifunctional gly 85.7 2.8 6.1E-05 48.2 8.7 42 104-146 126-167 (312)
281 PLN02602 lactate dehydrogenase 85.5 1.9 4.1E-05 50.4 7.2 33 512-548 38-70 (350)
282 PRK06035 3-hydroxyacyl-CoA deh 85.4 2.7 5.9E-05 47.6 8.3 33 115-148 4-36 (291)
283 PRK08618 ornithine cyclodeamin 85.4 2.7 5.8E-05 48.7 8.4 79 112-212 125-204 (325)
284 PRK07531 bifunctional 3-hydrox 85.4 3.6 7.7E-05 50.5 9.9 33 512-550 5-37 (495)
285 PLN02350 phosphogluconate dehy 85.3 4.7 0.0001 49.2 10.7 117 115-238 7-136 (493)
286 PRK08293 3-hydroxybutyryl-CoA 85.2 6.5 0.00014 44.5 11.2 32 115-147 4-35 (287)
287 PRK07576 short chain dehydroge 85.2 1.4 3.1E-05 48.8 5.9 37 507-549 5-42 (264)
288 PRK07680 late competence prote 85.2 5.2 0.00011 44.9 10.4 78 116-220 2-82 (273)
289 PRK08251 short chain dehydroge 85.2 3 6.5E-05 45.4 8.3 62 511-597 2-64 (248)
290 PF02826 2-Hacid_dh_C: D-isome 85.1 0.79 1.7E-05 48.2 3.5 41 108-149 30-70 (178)
291 cd00300 LDH_like L-lactate deh 85.1 1.9 4.2E-05 49.2 6.9 72 514-619 1-75 (300)
292 PRK02006 murD UDP-N-acetylmura 84.9 3 6.5E-05 51.1 8.9 94 112-231 5-101 (498)
293 COG1063 Tdh Threonine dehydrog 84.9 2.1 4.6E-05 50.0 7.3 95 513-639 171-267 (350)
294 PRK00094 gpsA NAD(P)H-dependen 84.9 5.2 0.00011 45.8 10.5 32 116-148 3-34 (325)
295 PRK12826 3-ketoacyl-(acyl-carr 84.9 1.8 4E-05 46.9 6.5 35 509-549 4-39 (251)
296 PF13460 NAD_binding_10: NADH( 84.8 7.8 0.00017 40.1 10.9 93 117-240 1-103 (183)
297 PRK07417 arogenate dehydrogena 84.8 3.6 7.9E-05 46.4 8.9 31 116-147 2-32 (279)
298 TIGR00465 ilvC ketol-acid redu 84.7 4.6 0.0001 46.5 9.8 33 112-145 1-33 (314)
299 PRK05708 2-dehydropantoate 2-r 84.7 0.82 1.8E-05 52.4 3.7 33 511-549 2-34 (305)
300 cd05296 GH4_P_beta_glucosidase 84.7 2.2 4.8E-05 51.1 7.4 109 116-244 2-117 (419)
301 PF02558 ApbA: Ketopantoate re 84.6 1.2 2.5E-05 45.1 4.4 29 117-146 1-29 (151)
302 cd01075 NAD_bind_Leu_Phe_Val_D 84.6 0.9 1.9E-05 48.8 3.7 36 508-549 25-60 (200)
303 PRK05854 short chain dehydroge 84.6 4.4 9.6E-05 46.4 9.7 56 112-187 12-68 (313)
304 PRK09496 trkA potassium transp 84.5 3.4 7.3E-05 49.8 9.0 94 510-636 230-323 (453)
305 PRK06223 malate dehydrogenase; 84.5 5.4 0.00012 45.6 10.2 32 115-146 3-34 (307)
306 PRK07679 pyrroline-5-carboxyla 84.2 5.6 0.00012 44.9 10.1 82 113-221 2-86 (279)
307 PRK02472 murD UDP-N-acetylmura 84.1 3.3 7.2E-05 49.8 8.8 126 112-268 3-129 (447)
308 PRK03562 glutathione-regulated 84.1 1.2 2.5E-05 56.2 5.0 89 511-634 400-488 (621)
309 cd01339 LDH-like_MDH L-lactate 84.0 8.4 0.00018 44.0 11.5 31 117-147 1-31 (300)
310 PRK04690 murD UDP-N-acetylmura 84.0 3.5 7.5E-05 50.2 8.8 92 112-232 6-98 (468)
311 PRK12921 2-dehydropantoate 2-r 83.9 6.5 0.00014 44.6 10.6 30 116-146 2-31 (305)
312 PRK09242 tropinone reductase; 83.8 5.3 0.00012 43.8 9.6 63 111-193 6-69 (257)
313 PLN02206 UDP-glucuronate decar 83.8 3.2 6.9E-05 50.1 8.3 33 510-548 118-151 (442)
314 PRK14618 NAD(P)H-dependent gly 83.7 5.9 0.00013 45.7 10.3 32 115-147 5-36 (328)
315 PRK05867 short chain dehydroge 83.7 2.2 4.8E-05 46.8 6.5 34 509-548 7-41 (253)
316 PRK09260 3-hydroxybutyryl-CoA 83.7 6.9 0.00015 44.3 10.6 33 115-148 2-34 (288)
317 PF01118 Semialdhyde_dh: Semia 83.7 5.7 0.00012 38.9 8.7 93 116-232 1-95 (121)
318 cd01338 MDH_choloroplast_like 83.7 1.6 3.4E-05 50.5 5.4 74 115-209 3-87 (322)
319 PLN03209 translocon at the inn 83.6 6.7 0.00014 48.6 10.9 105 112-237 78-210 (576)
320 PRK05335 tRNA (uracil-5-)-meth 83.5 0.97 2.1E-05 54.0 3.7 34 511-550 2-35 (436)
321 PLN02928 oxidoreductase family 83.5 1.4 3.1E-05 51.4 5.1 102 509-617 157-261 (347)
322 PRK07531 bifunctional 3-hydrox 83.5 6 0.00013 48.5 10.6 33 115-148 5-37 (495)
323 PRK12490 6-phosphogluconate de 83.4 3 6.6E-05 47.5 7.6 32 116-148 2-33 (299)
324 PRK06249 2-dehydropantoate 2-r 83.3 2 4.4E-05 49.3 6.1 34 114-148 5-38 (313)
325 PRK14620 NAD(P)H-dependent gly 83.2 8 0.00017 44.6 11.1 31 116-147 2-32 (326)
326 PRK06928 pyrroline-5-carboxyla 83.2 6.5 0.00014 44.4 10.1 79 116-220 3-84 (277)
327 cd05292 LDH_2 A subgroup of L- 83.2 3.8 8.2E-05 47.1 8.3 31 116-146 2-33 (308)
328 PRK07523 gluconate 5-dehydroge 83.2 3.2 7E-05 45.5 7.5 35 509-549 8-43 (255)
329 PTZ00142 6-phosphogluconate de 83.1 2.4 5.2E-05 51.5 6.9 116 115-237 2-129 (470)
330 PRK14619 NAD(P)H-dependent gly 83.1 5.6 0.00012 45.5 9.7 33 114-147 4-36 (308)
331 PRK09186 flagellin modificatio 83.1 3.1 6.7E-05 45.5 7.3 33 509-547 2-35 (256)
332 PRK08217 fabG 3-ketoacyl-(acyl 83.0 2.6 5.6E-05 45.8 6.6 34 509-548 3-37 (253)
333 PRK11154 fadJ multifunctional 83.0 1.7 3.7E-05 55.6 5.9 168 512-706 310-488 (708)
334 PRK06523 short chain dehydroge 83.0 3.3 7.2E-05 45.5 7.5 78 508-593 6-85 (260)
335 PRK03803 murD UDP-N-acetylmura 82.9 4 8.7E-05 49.3 8.7 125 114-269 6-130 (448)
336 PRK05479 ketol-acid reductoiso 82.8 3.7 8E-05 47.6 7.9 36 109-145 12-47 (330)
337 KOG0069 Glyoxylate/hydroxypyru 82.7 5 0.00011 46.4 8.9 85 109-225 157-244 (336)
338 PRK08339 short chain dehydroge 82.7 3.9 8.4E-05 45.4 8.0 34 509-548 6-40 (263)
339 PRK13304 L-aspartate dehydroge 82.7 3.7 8E-05 46.1 7.8 89 512-640 2-90 (265)
340 PRK08291 ectoine utilization p 82.7 4.4 9.6E-05 46.9 8.7 75 114-210 132-207 (330)
341 PLN03129 NADP-dependent malic 82.7 0.57 1.2E-05 57.4 1.4 108 507-641 317-434 (581)
342 PRK04663 murD UDP-N-acetylmura 82.6 3.2 6.9E-05 50.0 7.7 125 110-268 2-129 (438)
343 PF00106 adh_short: short chai 82.6 1.7 3.7E-05 44.1 4.7 62 512-597 1-63 (167)
344 COG1893 ApbA Ketopantoate redu 82.6 4.8 0.0001 46.3 8.7 84 115-225 1-92 (307)
345 PRK11880 pyrroline-5-carboxyla 82.6 6.3 0.00014 43.9 9.6 32 115-146 3-36 (267)
346 PTZ00431 pyrroline carboxylate 82.5 6.1 0.00013 44.2 9.4 34 113-146 2-38 (260)
347 TIGR01757 Malate-DH_plant mala 82.5 3.5 7.7E-05 48.7 7.7 77 114-209 44-129 (387)
348 PRK10669 putative cation:proto 82.4 6.1 0.00013 49.2 10.3 90 114-231 417-512 (558)
349 TIGR00518 alaDH alanine dehydr 82.4 2.3 5E-05 50.1 6.2 35 112-147 165-199 (370)
350 TIGR00065 ftsZ cell division p 82.4 6 0.00013 46.3 9.5 106 107-231 10-135 (349)
351 PLN02780 ketoreductase/ oxidor 82.3 4.2 9.2E-05 46.8 8.3 60 511-595 53-113 (320)
352 PRK06476 pyrroline-5-carboxyla 82.3 4.3 9.4E-05 45.1 8.1 90 513-640 2-91 (258)
353 TIGR01915 npdG NADPH-dependent 82.3 9.4 0.0002 41.4 10.5 84 116-220 2-88 (219)
354 PRK13529 malate dehydrogenase; 82.3 0.64 1.4E-05 56.8 1.6 132 492-642 258-416 (563)
355 PRK13243 glyoxylate reductase; 82.1 3.3 7.3E-05 48.1 7.4 36 110-146 146-181 (333)
356 PLN02306 hydroxypyruvate reduc 82.1 1.6 3.5E-05 51.7 4.8 35 508-548 162-197 (386)
357 PRK11790 D-3-phosphoglycerate 82.0 1.7 3.8E-05 51.9 5.1 35 508-548 148-182 (409)
358 cd05296 GH4_P_beta_glucosidase 82.0 3.5 7.5E-05 49.5 7.6 111 512-649 1-114 (419)
359 PRK07067 sorbitol dehydrogenas 81.9 3 6.4E-05 45.8 6.6 78 509-592 4-87 (257)
360 TIGR00873 gnd 6-phosphoglucona 81.9 3.4 7.3E-05 50.2 7.5 116 116-237 1-126 (467)
361 TIGR01763 MalateDH_bact malate 81.8 11 0.00025 43.2 11.4 32 115-146 2-33 (305)
362 PRK07478 short chain dehydroge 81.8 3.1 6.8E-05 45.6 6.7 34 509-548 4-38 (254)
363 PRK07062 short chain dehydroge 81.8 7.1 0.00015 43.1 9.6 34 112-146 6-40 (265)
364 PLN02240 UDP-glucose 4-epimera 81.7 5 0.00011 46.3 8.7 33 509-547 3-36 (352)
365 PRK07063 short chain dehydroge 81.7 6.2 0.00014 43.3 9.1 35 111-146 4-39 (260)
366 PF02558 ApbA: Ketopantoate re 81.7 1.4 3.1E-05 44.4 3.7 29 514-548 1-29 (151)
367 PTZ00082 L-lactate dehydrogena 81.7 1.3 2.9E-05 51.0 3.9 36 509-549 4-39 (321)
368 PF13460 NAD_binding_10: NADH( 81.6 5.8 0.00013 41.1 8.3 86 514-637 1-91 (183)
369 PF00106 adh_short: short chai 81.6 6.9 0.00015 39.6 8.7 59 115-192 1-60 (167)
370 cd00650 LDH_MDH_like NAD-depen 81.6 7.4 0.00016 43.5 9.6 71 117-208 1-78 (263)
371 PRK08229 2-dehydropantoate 2-r 81.6 10 0.00022 43.9 11.1 95 115-238 3-110 (341)
372 PRK08655 prephenate dehydrogen 81.4 2.8 6E-05 50.6 6.6 90 513-644 2-94 (437)
373 PLN02350 phosphogluconate dehy 81.4 5.7 0.00012 48.5 9.2 123 512-646 7-136 (493)
374 PRK09880 L-idonate 5-dehydroge 81.4 8.6 0.00019 44.4 10.5 34 113-146 169-202 (343)
375 PRK12384 sorbitol-6-phosphate 81.4 5.4 0.00012 43.8 8.4 33 511-549 2-35 (259)
376 PLN02427 UDP-apiose/xylose syn 81.4 3.2 6.9E-05 48.9 7.0 35 508-548 11-47 (386)
377 PLN02240 UDP-glucose 4-epimera 81.4 10 0.00022 43.7 11.1 34 112-146 3-37 (352)
378 PRK07634 pyrroline-5-carboxyla 81.3 4.6 9.9E-05 44.3 7.8 26 510-535 3-28 (245)
379 TIGR01771 L-LDH-NAD L-lactate 81.2 3 6.5E-05 47.7 6.4 68 119-209 1-73 (299)
380 TIGR01035 hemA glutamyl-tRNA r 81.2 1.3 2.9E-05 53.0 3.7 36 508-548 177-212 (417)
381 PF01210 NAD_Gly3P_dh_N: NAD-d 81.2 6.3 0.00014 40.5 8.3 32 116-148 1-32 (157)
382 TIGR02279 PaaC-3OHAcCoADH 3-hy 81.1 6 0.00013 48.6 9.4 33 114-147 5-37 (503)
383 KOG0024 Sorbitol dehydrogenase 81.1 4 8.6E-05 46.6 7.1 35 510-549 169-203 (354)
384 PLN02253 xanthoxin dehydrogena 81.1 3.6 7.8E-05 45.9 7.0 35 508-548 15-50 (280)
385 PRK06139 short chain dehydroge 81.0 3.1 6.8E-05 48.2 6.6 35 508-548 4-39 (330)
386 TIGR02992 ectoine_eutC ectoine 80.9 4.9 0.00011 46.6 8.1 145 437-620 50-204 (326)
387 PTZ00117 malate dehydrogenase; 80.9 1.5 3.2E-05 50.7 3.9 35 510-549 4-38 (319)
388 PRK05442 malate dehydrogenase; 80.8 2.4 5.3E-05 49.1 5.6 32 115-146 5-43 (326)
389 PRK11730 fadB multifunctional 80.8 2.3 5E-05 54.5 5.9 169 512-706 314-491 (715)
390 TIGR03466 HpnA hopanoid-associ 80.8 4.1 8.9E-05 46.2 7.5 31 513-549 2-33 (328)
391 PRK05565 fabG 3-ketoacyl-(acyl 80.7 5.3 0.00011 43.2 8.0 33 509-547 3-37 (247)
392 cd01337 MDH_glyoxysomal_mitoch 80.6 3.8 8.2E-05 47.1 7.0 73 116-209 2-77 (310)
393 PRK12491 pyrroline-5-carboxyla 80.6 12 0.00026 42.2 10.9 80 114-221 2-84 (272)
394 PRK05866 short chain dehydroge 80.6 3.5 7.6E-05 46.7 6.7 34 509-548 38-72 (293)
395 PTZ00431 pyrroline carboxylate 80.5 3.6 7.7E-05 46.0 6.6 37 510-548 2-38 (260)
396 PRK06141 ornithine cyclodeamin 80.5 4.1 8.9E-05 46.9 7.3 142 437-620 48-199 (314)
397 PLN02166 dTDP-glucose 4,6-dehy 80.4 5.4 0.00012 48.1 8.6 33 511-549 120-153 (436)
398 PLN02166 dTDP-glucose 4,6-dehy 80.3 8.2 0.00018 46.6 10.0 103 114-241 120-240 (436)
399 PRK08251 short chain dehydroge 80.3 9.2 0.0002 41.6 9.7 60 114-193 2-62 (248)
400 PF10727 Rossmann-like: Rossma 80.3 7.8 0.00017 38.7 8.2 83 510-633 9-91 (127)
401 PRK12550 shikimate 5-dehydroge 80.2 2.4 5.2E-05 47.8 5.1 32 115-146 123-154 (272)
402 cd01080 NAD_bind_m-THF_DH_Cycl 80.1 2.4 5.3E-05 44.3 4.8 35 111-146 41-76 (168)
403 PRK07340 ornithine cyclodeamin 80.0 2.7 5.8E-05 48.2 5.6 141 437-620 49-198 (304)
404 PRK06057 short chain dehydroge 80.0 2.6 5.7E-05 46.3 5.4 36 508-549 4-40 (255)
405 PF10727 Rossmann-like: Rossma 80.0 3.4 7.3E-05 41.2 5.5 81 113-221 9-89 (127)
406 PRK06522 2-dehydropantoate 2-r 80.0 1.7 3.6E-05 49.3 3.9 31 513-549 2-32 (304)
407 PRK15059 tartronate semialdehy 80.0 5.4 0.00012 45.5 8.0 108 116-237 2-121 (292)
408 PRK12939 short chain dehydroge 79.9 3.9 8.4E-05 44.4 6.6 33 509-547 5-38 (250)
409 cd05298 GH4_GlvA_pagL_like Gly 79.9 5.3 0.00011 48.2 8.2 106 513-648 2-112 (437)
410 COG1893 ApbA Ketopantoate redu 79.9 4.9 0.00011 46.2 7.6 23 512-534 1-23 (307)
411 PRK03659 glutathione-regulated 79.9 3.4 7.3E-05 52.0 6.8 90 511-635 400-489 (601)
412 TIGR03589 PseB UDP-N-acetylglu 79.9 13 0.00029 42.7 11.3 36 112-147 2-39 (324)
413 PRK07576 short chain dehydroge 79.9 6 0.00013 43.9 8.2 39 108-147 3-42 (264)
414 TIGR02440 FadJ fatty oxidation 79.9 2.5 5.3E-05 54.1 5.7 168 512-706 305-483 (699)
415 TIGR01202 bchC 2-desacetyl-2-h 79.8 6.8 0.00015 44.7 8.8 82 113-225 144-225 (308)
416 PTZ00317 NADP-dependent malic 79.8 0.99 2.1E-05 55.1 2.0 128 492-641 260-414 (559)
417 PRK06129 3-hydroxyacyl-CoA deh 79.8 7.5 0.00016 44.5 9.1 104 115-238 3-121 (308)
418 PRK06249 2-dehydropantoate 2-r 79.7 1.6 3.5E-05 50.0 3.7 34 511-550 5-38 (313)
419 cd05211 NAD_bind_Glu_Leu_Phe_V 79.7 2.4 5.1E-05 46.2 4.7 38 111-148 20-57 (217)
420 PRK07231 fabG 3-ketoacyl-(acyl 79.6 6.9 0.00015 42.5 8.5 35 112-147 3-38 (251)
421 TIGR00036 dapB dihydrodipicoli 79.6 4.2 9.2E-05 45.7 6.9 97 513-646 3-102 (266)
422 PF03949 Malic_M: Malic enzyme 79.6 2.3 4.9E-05 47.4 4.5 102 110-231 21-137 (255)
423 PRK15409 bifunctional glyoxyla 79.6 3.1 6.6E-05 48.2 5.9 34 508-547 142-176 (323)
424 PRK13018 cell division protein 79.6 12 0.00026 44.3 10.7 104 114-236 28-151 (378)
425 KOG0069 Glyoxylate/hydroxypyru 79.5 1.9 4.1E-05 49.8 4.1 86 507-636 158-244 (336)
426 PRK00421 murC UDP-N-acetylmura 79.5 4.5 9.9E-05 49.0 7.6 121 113-268 6-128 (461)
427 PRK00676 hemA glutamyl-tRNA re 79.5 2.4 5.1E-05 49.2 4.8 38 111-148 171-208 (338)
428 PRK07679 pyrroline-5-carboxyla 79.4 3.7 8.1E-05 46.3 6.4 93 511-640 3-97 (279)
429 PLN02427 UDP-apiose/xylose syn 79.4 8.7 0.00019 45.2 9.8 37 110-146 10-47 (386)
430 cd00762 NAD_bind_malic_enz NAD 79.3 1.2 2.6E-05 49.4 2.4 38 507-549 21-68 (254)
431 PRK08374 homoserine dehydrogen 79.2 4.8 0.0001 46.8 7.3 109 512-642 3-122 (336)
432 PRK14982 acyl-ACP reductase; P 79.2 1.7 3.6E-05 50.6 3.5 49 496-549 140-190 (340)
433 PLN00106 malate dehydrogenase 79.1 6.9 0.00015 45.3 8.5 74 113-207 17-93 (323)
434 PRK10537 voltage-gated potassi 79.1 5.6 0.00012 47.3 7.9 37 510-552 239-275 (393)
435 PRK06940 short chain dehydroge 79.1 4.4 9.5E-05 45.4 6.9 32 511-549 2-33 (275)
436 PRK06476 pyrroline-5-carboxyla 79.1 8.2 0.00018 42.9 9.0 23 116-138 2-24 (258)
437 cd05211 NAD_bind_Glu_Leu_Phe_V 79.1 1.9 4.1E-05 47.0 3.7 38 508-550 20-57 (217)
438 PLN00016 RNA-binding protein; 79.1 8.3 0.00018 45.3 9.5 113 109-241 47-171 (378)
439 PRK07814 short chain dehydroge 79.0 4.4 9.6E-05 44.8 6.8 35 509-549 8-43 (263)
440 PRK00811 spermidine synthase; 79.0 4 8.7E-05 46.3 6.5 93 91-207 56-157 (283)
441 PRK03369 murD UDP-N-acetylmura 79.0 5.5 0.00012 48.8 8.1 89 113-232 11-99 (488)
442 PF02719 Polysacc_synt_2: Poly 79.0 0.81 1.7E-05 51.9 0.9 41 514-559 1-42 (293)
443 COG1250 FadB 3-hydroxyacyl-CoA 78.9 3.9 8.5E-05 46.8 6.3 107 512-646 4-121 (307)
444 TIGR01850 argC N-acetyl-gamma- 78.9 4.8 0.0001 47.0 7.3 98 512-643 1-100 (346)
445 PRK00048 dihydrodipicolinate r 78.9 9.6 0.00021 42.6 9.4 34 115-148 2-37 (257)
446 PRK07831 short chain dehydroge 78.9 9.4 0.0002 42.0 9.4 34 112-146 15-50 (262)
447 PRK12861 malic enzyme; Reviewe 78.8 0.84 1.8E-05 58.0 1.1 42 507-551 185-226 (764)
448 PRK12550 shikimate 5-dehydroge 78.8 2.1 4.5E-05 48.4 4.1 33 511-548 122-154 (272)
449 PRK13301 putative L-aspartate 78.8 2.5 5.5E-05 47.2 4.7 117 114-240 2-129 (267)
450 PRK08125 bifunctional UDP-gluc 78.8 6.8 0.00015 49.8 9.1 40 504-549 308-349 (660)
451 TIGR02437 FadB fatty oxidation 78.7 3.3 7.2E-05 53.0 6.4 169 512-706 314-491 (714)
452 TIGR00137 gid_trmFO tRNA:m(5)U 78.7 1.9 4.1E-05 51.7 3.8 32 512-549 1-32 (433)
453 PRK06172 short chain dehydroge 78.6 4.7 0.0001 44.1 6.8 35 509-549 5-40 (253)
454 PRK08507 prephenate dehydrogen 78.6 8.7 0.00019 43.2 9.0 31 116-146 2-33 (275)
455 PRK12439 NAD(P)H-dependent gly 78.6 6.7 0.00015 45.7 8.4 102 115-232 8-109 (341)
456 PRK03806 murD UDP-N-acetylmura 78.6 7.1 0.00015 46.9 8.8 123 112-268 4-126 (438)
457 PRK06138 short chain dehydroge 78.5 5.8 0.00012 43.2 7.4 34 509-548 3-37 (252)
458 TIGR01772 MDH_euk_gproteo mala 78.5 3.8 8.2E-05 47.2 6.1 70 116-207 1-74 (312)
459 TIGR01181 dTDP_gluc_dehyt dTDP 78.5 12 0.00026 42.0 10.2 31 116-146 1-33 (317)
460 TIGR00873 gnd 6-phosphoglucona 78.4 2.8 6E-05 51.0 5.3 121 513-646 1-127 (467)
461 TIGR02622 CDP_4_6_dhtase CDP-g 78.3 6.3 0.00014 45.7 8.0 35 112-147 2-37 (349)
462 PRK09330 cell division protein 78.3 8.1 0.00018 45.7 8.9 100 112-231 11-131 (384)
463 COG1087 GalE UDP-glucose 4-epi 78.3 8.6 0.00019 43.7 8.5 117 512-651 1-126 (329)
464 PRK07792 fabG 3-ketoacyl-(acyl 78.3 4.1 9E-05 46.4 6.4 35 508-548 9-44 (306)
465 COG1064 AdhP Zn-dependent alco 78.3 12 0.00027 43.4 10.1 87 114-225 167-253 (339)
466 PRK07774 short chain dehydroge 78.2 3.4 7.4E-05 45.0 5.5 35 509-549 4-39 (250)
467 PRK07856 short chain dehydroge 78.2 6.6 0.00014 43.0 7.8 78 509-593 4-83 (252)
468 PRK05875 short chain dehydroge 78.2 6.4 0.00014 43.7 7.8 81 509-617 5-93 (276)
469 PRK08605 D-lactate dehydrogena 78.1 2.6 5.7E-05 48.9 4.8 35 508-548 143-178 (332)
470 cd00704 MDH Malate dehydrogena 78.1 2.2 4.8E-05 49.3 4.2 33 115-147 1-40 (323)
471 TIGR03589 PseB UDP-N-acetylglu 78.1 5.8 0.00013 45.6 7.6 37 509-549 2-39 (324)
472 PRK12826 3-ketoacyl-(acyl-carr 78.1 7.4 0.00016 42.1 8.1 36 111-147 3-39 (251)
473 PRK00676 hemA glutamyl-tRNA re 78.1 1.9 4E-05 50.0 3.5 34 508-546 171-204 (338)
474 PLN02688 pyrroline-5-carboxyla 78.1 13 0.00028 41.5 10.1 76 116-220 2-81 (266)
475 TIGR02853 spore_dpaA dipicolin 78.0 1.9 4.2E-05 49.0 3.6 35 508-548 148-182 (287)
476 PRK08291 ectoine utilization p 77.9 7 0.00015 45.3 8.2 146 436-620 52-207 (330)
477 PRK07574 formate dehydrogenase 77.7 7 0.00015 46.3 8.2 36 110-146 188-223 (385)
478 PRK06720 hypothetical protein; 77.7 6 0.00013 41.3 6.9 35 509-549 14-49 (169)
479 COG1063 Tdh Threonine dehydrog 77.6 13 0.00028 43.5 10.3 90 113-225 168-263 (350)
480 PRK05717 oxidoreductase; Valid 77.6 3.9 8.5E-05 44.9 5.8 80 509-594 8-93 (255)
481 PRK12771 putative glutamate sy 77.6 7.3 0.00016 48.5 8.8 35 113-148 136-170 (564)
482 PRK11199 tyrA bifunctional cho 77.5 6.3 0.00014 46.6 7.8 77 512-644 99-177 (374)
483 PRK14188 bifunctional 5,10-met 77.5 5.5 0.00012 45.5 6.9 77 508-644 155-232 (296)
484 cd01076 NAD_bind_1_Glu_DH NAD( 77.4 10 0.00022 41.7 8.8 38 110-147 27-64 (227)
485 PRK06181 short chain dehydroge 77.4 5.5 0.00012 43.8 6.9 31 512-548 2-33 (263)
486 PRK13403 ketol-acid reductoiso 77.4 2.2 4.7E-05 49.1 3.7 36 506-547 11-46 (335)
487 PRK12769 putative oxidoreducta 77.4 5.8 0.00013 50.4 8.0 34 510-549 326-359 (654)
488 TIGR02853 spore_dpaA dipicolin 77.4 3 6.5E-05 47.5 4.8 35 111-146 148-182 (287)
489 PRK12367 short chain dehydroge 77.4 2.6 5.7E-05 46.5 4.3 39 505-549 8-47 (245)
490 PRK12409 D-amino acid dehydrog 77.3 2.1 4.6E-05 50.7 3.9 33 512-550 2-34 (410)
491 PRK00045 hemA glutamyl-tRNA re 77.3 2.1 4.5E-05 51.5 3.7 36 509-549 180-215 (423)
492 PRK13403 ketol-acid reductoiso 77.2 3 6.5E-05 48.0 4.8 38 108-146 10-47 (335)
493 TIGR01327 PGDH D-3-phosphoglyc 77.2 3 6.5E-05 51.5 5.2 35 508-548 135-169 (525)
494 PLN02688 pyrroline-5-carboxyla 77.2 9 0.0002 42.7 8.6 24 512-535 1-24 (266)
495 TIGR01202 bchC 2-desacetyl-2-h 77.1 6.4 0.00014 44.9 7.5 32 512-548 146-177 (308)
496 PRK08268 3-hydroxy-acyl-CoA de 77.1 7.3 0.00016 48.0 8.4 33 115-148 8-40 (507)
497 PRK12827 short chain dehydroge 76.9 6.1 0.00013 42.7 7.0 33 509-547 4-37 (249)
498 PRK12480 D-lactate dehydrogena 76.8 2.3 5E-05 49.3 3.8 36 508-549 143-178 (330)
499 PRK06398 aldose dehydrogenase; 76.8 8 0.00017 42.7 8.0 77 508-594 3-81 (258)
500 PRK06125 short chain dehydroge 76.7 7.7 0.00017 42.6 7.8 83 509-617 5-88 (259)
No 1
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-264 Score=2258.35 Aligned_cols=1005 Identities=60% Similarity=1.014 Sum_probs=976.5
Q ss_pred ccCCCCCCCchhHhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccC
Q 001331 82 MTLGNSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFS 161 (1099)
Q Consensus 82 ~~~~~~~~~~~~~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~ 161 (1099)
|..++++..++|+++||||++++|.++|+||..++|||.||+|||.||||||+|+||+++||+|...+.++||++|||++
T Consensus 5 ~~~~~~a~~~IDE~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~ 84 (1013)
T KOG2012|consen 5 MMDGNSASQEIDESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLS 84 (1013)
T ss_pred ccccCcchhhhhhhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeee
Confidence 34455557899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHHhCCCcEEEEEecCCChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEE
Q 001331 162 DNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGS 241 (1099)
Q Consensus 162 ~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~ 241 (1099)
++|||++||+++.++|++||++|.|.++++.++++++++|+|||+|+.+++.+.+|+++||+++ |.||.++++|++|+
T Consensus 85 E~DigknRA~as~~~LaeLN~yV~V~v~t~~~~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~--i~fi~ad~RGLfg~ 162 (1013)
T KOG2012|consen 85 EEDIGKNRAEASVEKLAELNNYVPVVVLTGPLTEEFLSDFQVVVLTDASLEEQLKINDFCHSHG--IAFIAADTRGLFGQ 162 (1013)
T ss_pred HHhcCCchHHHHHHHHHHhhcceeeEEecCcccHHHHhCCcEEEEecCchHHHHHHHHHHHhcC--eEEEEeccchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEEEcCCceEEEcCCCCCCcceeecccccCCCceeeeccccccccccCCeeEEEEeecccccCCCCCccccccCCceeee
Q 001331 242 VFCDFGPEFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTL 321 (1099)
Q Consensus 242 vf~d~g~~~~v~d~~ge~p~~~~i~~I~~~~~~lv~~~~~~~~~~~dgd~v~f~ev~gm~eln~~~~~~i~~~~~~~f~i 321 (1099)
+|||||++|+|.|.+|++|.+++|++|++++|++|||+++.||+|+|||+|+|+||+||+++|+++|++|+++++|+|+|
T Consensus 163 lFCDFG~eF~v~D~tGeeP~t~mI~~Is~d~pGvvT~ld~~rH~lEdGd~V~FsEveGm~eLN~~~P~kI~v~~p~sf~I 242 (1013)
T KOG2012|consen 163 LFCDFGEEFTVLDPTGEEPLTGMIASISQDNPGVVTCLDGARHGFEDGDLVTFSEVEGMTELNDCKPRKITVLGPYSFSI 242 (1013)
T ss_pred hhccCCCceEEeCCCCCcchhhHHhhccCCCCceEEEecCccccCccCCEEEEEeeccccccCCCCceEEEEecCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeecceEEEeeCCeeecccchHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHH
Q 001331 322 EEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDA 401 (1099)
Q Consensus 322 ~~Dt~~f~~y~~gg~~~qvk~p~~i~f~sL~e~l~~p~~~l~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~ 401 (1099)
+|++.|+.|.+||+++|||+|++++|+||+++|.+| +++.+|++|++||+++|++|+||++|.++|||+|.+++++|+
T Consensus 243 -gdt~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P-~fl~~df~k~~rp~~lH~af~AL~~F~~~~Gr~P~p~~e~DA 320 (1013)
T KOG2012|consen 243 -GDTTEFGEYKKGGIFTQVKVPKTISFKSLREALKEP-EFLISDFAKFDRPPQLHLAFQALHQFQEAHGRLPRPGNEEDA 320 (1013)
T ss_pred -ccccchhhhhcCceeEEeecCceEecccHHHhhcCC-CeeeeccccccccHHHHHHHHHHHHHHHHhCCCCCCCChhhH
Confidence 579999999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhhcccccCchhhhhhhhhhHHHHHhhcCCccccceeeeeccCCCCCCC-
Q 001331 402 QKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTE- 480 (1099)
Q Consensus 402 ~~l~~~a~~i~~~~~~~~~~~i~~~~i~~~a~~~~~el~pvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~~e~l~~~- 480 (1099)
++|++++..+.+..+. ..++++++|++|+..+++.|.||+|++||+|||||+|+|||||+||.||||||++|+||++
T Consensus 321 ~~l~~l~~~i~~~~~~--~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~sgKF~PL~Q~lYfDale~LP~d~ 398 (1013)
T KOG2012|consen 321 EELVELARDISEGLGL--EEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACSGKFTPLKQWLYFDALESLPSDN 398 (1013)
T ss_pred HHHHHHHHHhhhhccc--cccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhccCccchhHheehhhHhhCCCcC
Confidence 9999999999887652 4689999999999999999999999999999999999999999999999999999999975
Q ss_pred -CCCCCCCCCccCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcc
Q 001331 481 -PLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQ 559 (1099)
Q Consensus 481 -~~~~~~~~~~~~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQ 559 (1099)
++++++++|.++|||.||++||...|+||.++|+|+|||||||||+|||||+||++||..|+|+|+|||.||.||||||
T Consensus 399 ~~~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQ 478 (1013)
T KOG2012|consen 399 LPPSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQ 478 (1013)
T ss_pred CCCCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccce
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEE
Q 001331 560 FLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 639 (1099)
Q Consensus 560 flf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli 639 (1099)
||||++|||++|+++||+++..|||+++|+++..++++++|++|+|+||++.|+|.+||||+.||+|++++|+.+.+||+
T Consensus 479 FLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLL 558 (1013)
T KOG2012|consen 479 FLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLL 558 (1013)
T ss_pred eeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCcCcccceeEEEeCcccccCCCCCCCCCCCCCcccccCCCCCcchhHHHHHHHhhhhccCChhhhhhhcCCChhhhhh
Q 001331 640 ESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTS 719 (1099)
Q Consensus 640 ~sgt~G~~G~~~v~ip~~t~cy~c~~~p~~~~~p~Ct~~~~P~~~~Hci~wAr~~F~~lF~~~~~~~~~~l~~~~~~~~~ 719 (1099)
++||+|++|++||++|++||+|++++|||||++|+||++|||+.|+|||+|||+.||++|.+.++++|+||++|..+...
T Consensus 559 ESGTlGTKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~eFEg~F~~~~e~vN~yls~p~f~e~s 638 (1013)
T KOG2012|consen 559 ESGTLGTKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARDEFEGLFKQSAENVNKYLSDPVFYETS 638 (1013)
T ss_pred hccCcCCccceeEEeccccccccccCCCcccCCceeeeccCchHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977777
Q ss_pred hhhcCchhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccC
Q 001331 720 MANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFS 799 (1099)
Q Consensus 720 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~c~~~a~~~f~~~F~~~i~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd 799 (1099)
++..++.+.++.|+++.++|. .+|.+|+||++|||..|+++|+++|+|||++||+|++|++|+||||||||||+||+||
T Consensus 639 l~~~~~~~~~~~l~~v~~~l~-~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~~t~~G~pFWs~pKr~P~pl~Fd 717 (1013)
T KOG2012|consen 639 LKLIGEPQSLETLERVVDCLS-ERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDAKTSDGAPFWSGPKRCPRPLEFD 717 (1013)
T ss_pred HhhccCcchhHHHHHHHHHhh-cCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCcccccCCCCcCCCCCCCCCCceeec
Confidence 888888999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCCCCCCCCChHHHHHHhhhcCCCCCCCCCCcceecccccccccccCcCcHHHHHHHHH
Q 001331 800 SADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLII 879 (1099)
Q Consensus 800 ~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~ 879 (1099)
.+|++|+.||++||+|||++|||+.. .+...++.++..+++|+|+|+++++|.+++.+...++.+.|+.+.|++|..
T Consensus 718 ~n~~~hl~fv~Aaa~l~a~~~gi~~~---~d~~~~~~~~~~v~~p~f~P~~~~~i~~~~~~~~~~~~s~d~~~~i~~l~~ 794 (1013)
T KOG2012|consen 718 VNDPLHLNFVQAAANLRAEVYGIPGS---QDREALAELLERVIVPEFEPKQKVKIVVEEAELAASSASVDDSAAIDQLNK 794 (1013)
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCcc---cCHHHhhhhHhhcCCCccccccCCeecccccccccccccCCchHHHHHHhh
Confidence 99999999999999999999999984 567799999999999999999999999999888877788899999999999
Q ss_pred HHHHhhhcCCCCCCcCCceeeccCCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhccccchhhhhHHHHHHHHHHHH
Q 001331 880 KLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL 959 (1099)
Q Consensus 880 ~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFI~aasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl 959 (1099)
.|..+.. ..+++|.|+.||||||+|+|||||+|||||||.||+||++||+++|+|||+||||||||||+|+||+||||
T Consensus 795 ~l~~~~~--~~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~IaGkIIPAIATtTa~v~Glv~LEl 872 (1013)
T KOG2012|consen 795 ALPSPSV--LPSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIAGKIIPAIATTTAAVSGLVCLEL 872 (1013)
T ss_pred ccccccc--CCCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheeeeeEEEEEeehhHHHHHHHHhhh
Confidence 9988766 45589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcccccccccccccCcccccCCCCCccccc-CCcceeEEeEEEcCCCCcHHHHHHHHHHc-CCceeeeecCC
Q 001331 960 YKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKH-RDMSWTVWDRWILKDNPTLRELIQWLKDK-GLNAYSISCGS 1037 (1099)
Q Consensus 960 ~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~~~~~~-~~~~~t~Wd~~~v~~~~TL~~li~~~~~~-~l~~~~i~~g~ 1037 (1099)
||++.|+.+++.|||+|+|||+|+|.++||.++++..+ .+.+||+||||++.|++||++||++++++ |++++||++|+
T Consensus 873 yKv~~G~~~~e~~Kn~flnLAlp~f~~~ep~~~pk~~~~~~~~~tlWdR~~v~g~~tL~~~L~~~~~~~gl~i~mls~G~ 952 (1013)
T KOG2012|consen 873 YKVVDGKRPVEAYKNTFLNLALPFFSFAEPLAAPKVQYHNDLSWTLWDRWEVKGEPTLREFLDHLEEQHGLEITMLSQGV 952 (1013)
T ss_pred hhhccCCCchHHhhhhhhcccccceeecccCCCcceeeecccceeeeEEEEecCCCCHHHHHHHHhhhcCceEEEEeccc
Confidence 99999988999999999999999999999999777664 55699999999999999999999999988 99999999999
Q ss_pred ceeecCCCcchhccccCcHHHHHHHhhccCCCCceeEEEEEEEeecCCCCccccCeEEEEe
Q 001331 1038 CLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYF 1098 (1099)
Q Consensus 1038 ~~LY~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~d~~~~~v~~P~v~~~~ 1098 (1099)
+|||++|||++++||+++++||++.++++++|+++++|+|+++|+|++|+|+++|+|||+|
T Consensus 953 ~lly~~~~~k~~erl~~~v~elv~~~~k~~~~~~~~~lvle~~~~d~~~eDve~P~v~y~f 1013 (1013)
T KOG2012|consen 953 SLLYASFMPKHAERLPLRVTELVRDVTKKKLPPHVRHLVLEVACEDDDDEDVEVPPVRYYF 1013 (1013)
T ss_pred eeehhhhhhHHHHhcCCcHHHHHHHHhcccCCCcceEEEEEEecCCCCCCcCCCCceEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999986
No 2
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=5.6e-233 Score=2157.79 Aligned_cols=1005 Identities=53% Similarity=0.891 Sum_probs=962.7
Q ss_pred chhHhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHH
Q 001331 91 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 170 (1099)
Q Consensus 91 ~~~~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Ka 170 (1099)
++|+++|||||++||.++|+||++++|||+||||||+||||||+|+|||+|+|+|++.|+++||+||||++++|||++||
T Consensus 1 ~id~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Ka 80 (1008)
T TIGR01408 1 EIDEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRA 80 (1008)
T ss_pred CchHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEcCCce
Q 001331 171 LASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEF 250 (1099)
Q Consensus 171 ea~~~~L~eLNp~V~v~~~~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~~ 250 (1099)
++++++|++|||+|+|+++...++++++.+||+||+|.++.+.+..||++||+++++||||++++.|++|++|+|||++|
T Consensus 81 ea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D~g~~f 160 (1008)
T TIGR01408 81 EAVVKKLAELNPYVHVSSSSVPFNEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGDEF 160 (1008)
T ss_pred HHHHHHHHHHCCCceEEEecccCCHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEecCCCce
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred EEEcCCCCCCcceeecccccCCCceeeeccccccccccCCeeEEEEeecccccCCCCCccccccCCceeeeccccccccc
Q 001331 251 TVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGT 330 (1099)
Q Consensus 251 ~v~d~~ge~p~~~~i~~I~~~~~~lv~~~~~~~~~~~dgd~v~f~ev~gm~eln~~~~~~i~~~~~~~f~i~~Dt~~f~~ 330 (1099)
.+.|.+|+.|.+++|.+|+++++++|+++++.+|++++||+|+|+||+||+++|++++++|++.++|+|.| +|++.|++
T Consensus 161 ~~~d~~ge~p~~~~i~~i~~~~~g~Vt~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~i~~~~~~~f~i-~dt~~~~~ 239 (1008)
T TIGR01408 161 EVLDTDGEEPKTGFIASITQANPGIVTCLENHRHKLETGDFVTFREVNGMTGLNDGSPRKITVISPYSFSI-GDTTELGP 239 (1008)
T ss_pred EEEeCCCCCCCcccccccccCCCceEEeecCcccCCcCCCEEEEeecccccccCCCCceeEEecCCceEEe-ccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 59999999
Q ss_pred eeecceEEEeeCCeeecccchHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Q 001331 331 YVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATN 410 (1099)
Q Consensus 331 y~~gg~~~qvk~p~~i~f~sL~e~l~~p~~~l~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~l~~~a~~ 410 (1099)
|.+||+++|+|+|++++|+||+++|.+| +++.+|++|+++++.+|++|+||++|.++|||+|.+++.+|++++++++++
T Consensus 240 y~~gG~~~qvK~p~~~~Fksl~~~l~~p-~~~~~d~~k~~r~~~lh~~~~aL~~f~~~~g~~P~~~~~~d~~~~~~~a~~ 318 (1008)
T TIGR01408 240 YLHGGIATQVKTPKTVFFKSLREQLKDP-KCLIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEELLKLATS 318 (1008)
T ss_pred hhcCceEEEEeccccccccCHHHHHcCC-cccccchhhcCCchhHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 799999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHhhcccccCchhhhhhhhhhHHHHHhhcCCccccceeeeeccCCCCCCC-CCCCCCCCC
Q 001331 411 INESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTE-PLDSTEFKP 489 (1099)
Q Consensus 411 i~~~~~~~~~~~i~~~~i~~~a~~~~~el~pvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~~e~l~~~-~~~~~~~~~ 489 (1099)
++++.+.. .+.+++++++.|+++++++++||||++||++||||||+|||||+||+||||||++++||.. ++..+++.+
T Consensus 319 i~~~~~~~-~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKaisgKf~Pi~q~~~~D~~e~l~~~~~~~~~~~~~ 397 (1008)
T TIGR01408 319 ISETLEEK-VPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSPLCQWFYFDSAESLPSLGKPECEEFLP 397 (1008)
T ss_pred HHHhcCCC-cccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhcCCCCCceeeEEeehhhhCCcccCcchhhccc
Confidence 99876532 3569999999999999999999999999999999999999999999999999999999975 444557778
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccc
Q 001331 490 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 569 (1099)
Q Consensus 490 ~~~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~ 569 (1099)
.++|||||+++||.++|++|++++|+||||||||||++|+||++||+||++|+|+|+|+|+||.|||||||||+.+|||+
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk 477 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGK 477 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccce
Q 001331 570 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 649 (1099)
Q Consensus 570 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~ 649 (1099)
+||++|+++++++||+++|+++..+++++++++|+++||+++|+|++|+||+++|+|++++|+.+++|||++|+.|++|+
T Consensus 478 ~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~ 557 (1008)
T TIGR01408 478 PKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGN 557 (1008)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceee
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCcccccCCCCCCCCCCCCCcccccCCCCCcchhHHHHHHHhhhhccCChhhhhhhcCCChhhhhhhhhcCchhHH
Q 001331 650 TQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQAR 729 (1099)
Q Consensus 650 ~~v~ip~~t~cy~c~~~p~~~~~p~Ct~~~~P~~~~Hci~wAr~~F~~lF~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 729 (1099)
+++++|++|+||.|+++|+++++|+||+++||+.++|||+|||++|+++|+..|+++|+|+++|..|.+++......+.+
T Consensus 558 v~v~ip~~te~y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1008)
T TIGR01408 558 TQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSR 637 (1008)
T ss_pred EEEEeCCCcCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHhhHHHHHHHhhChHHHHHHHHhcCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888777788
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHH
Q 001331 730 DNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFV 809 (1099)
Q Consensus 730 ~~l~~~~~~l~~~~~~~~~~c~~~a~~~f~~~F~~~i~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi 809 (1099)
+.|+.+++.|...+|.+|+|||+|||.+|+++|+++|+|||++||+|++|++|+||||||||+|+||+||.+|++|++||
T Consensus 638 ~~l~~i~~~l~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi 717 (1008)
T TIGR01408 638 EGLEQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFI 717 (1008)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCccccCCCCCCCceeeCCCCHHHHHHH
Confidence 89999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCChHHHHHHhhhcCCCCCCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCC
Q 001331 810 MAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLP 889 (1099)
Q Consensus 810 ~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 889 (1099)
.+||+|||.+|||+.+.++.+.+.++++++++.+|+|.|++++++..+|++.+......++.+.++.|.++|...... .
T Consensus 718 ~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~ 796 (1008)
T TIGR01408 718 QAAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEAT-K 796 (1008)
T ss_pred HHHHHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecChhhhcccccccchHHHHHHHHHHhhccccc-c
Confidence 999999999999998765556689999999999999999999999998877655433344567788888877765431 1
Q ss_pred CCCCcCCceeeccCCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 001331 890 SGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKL 969 (1099)
Q Consensus 890 ~~~~~~p~~FeKDDd~n~hidFI~aasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~~~ 969 (1099)
.+++++|++||||||+|+|||||+|||||||+||+||++|||++|+||||||||||||||+||||||||+||++++..++
T Consensus 797 ~~~~~~p~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i 876 (1008)
T TIGR01408 797 SDFRMAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKF 876 (1008)
T ss_pred CCCCCCceeeccCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHhccccH
Confidence 23789999999999999999999999999999999999999999999999999999999999999999999999997789
Q ss_pred ccccccccccccCcccccCCCCCcccccCCcce-eEEeEEEcCCCCcHHHHHHHHHHc-CCceeeeecCCceeecCCCcc
Q 001331 970 EDYRNTFANLALPLFSMAEPVPPKVIKHRDMSW-TVWDRWILKDNPTLRELIQWLKDK-GLNAYSISCGSCLLFNSMFPR 1047 (1099)
Q Consensus 970 ~~~rn~f~nla~p~~~~~eP~~~~~~~~~~~~~-t~Wd~~~v~~~~TL~~li~~~~~~-~l~~~~i~~g~~~LY~~~~~~ 1047 (1099)
+.|||+|+|||+|+|.|+||.||++.++.++.| |+||||++.+++||++|+++|+++ |+++.||++|++|||++|+++
T Consensus 877 ~~~kn~f~nlalp~~~~seP~~~~~~~~~~~~~~t~WDr~~i~~~~Tl~~~i~~~~~~~~~~v~~is~g~~~lY~~~~~~ 956 (1008)
T TIGR01408 877 EVYKNCFLNLAIPLFVFTEPTEVRKTKIRNGISFTIWDRWTLHGDFTLLEFINAVKEKYGLEPTMVSQGVKLLYVPVMPG 956 (1008)
T ss_pred HHHhHHHHhhccccccccCCCCCCceeecCceeccceEEEEecCCCcHHHHHHHHHHHhCCeeEEEEcCceEEEeccchh
Confidence 999999999999999999999999999888899 999999999999999999999999 999999999999999999988
Q ss_pred hhccccCcHHHHHHHhhccCCCCceeEEEEEEEeecCCCCccccCeEEEEeC
Q 001331 1048 HKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR 1099 (1099)
Q Consensus 1048 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~d~~~~~v~~P~v~~~~~ 1099 (1099)
+++||+++|+||+++++++++|++++||+|+++|+|++++||++|+|+|+||
T Consensus 957 ~~erl~~~l~el~~~~~k~~~~~~~~~l~~~~~~~d~~~~dv~~P~v~~~~~ 1008 (1008)
T TIGR01408 957 HAERLKLKMHKLVKPTTKKKLPPYRVHLTVSFACDDDGDEDVPGPPVRIYFS 1008 (1008)
T ss_pred hHHhcCCCHHHHHHHhccCCCCCCceEEEEEEEeecCCCCcccCCeEEEEeC
Confidence 8999999999999999999999999999999999999999999999999986
No 3
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=5.2e-120 Score=1043.38 Aligned_cols=430 Identities=61% Similarity=1.086 Sum_probs=414.1
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 592 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 592 (1099)
||+||||||+|||++|+||++||+||++|+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccceeEEEeCcccccCCCCCCCCCCCC
Q 001331 593 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 672 (1099)
Q Consensus 593 ~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~~~v~ip~~t~cy~c~~~p~~~~~ 672 (1099)
.+++++++++|+++||+++|+|++|+||+++|++++++|+.+++|+|++|+.|++|++++++|+.|+||.|..+|+++++
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p~~~~~ 160 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSI 160 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCCCCCCC
Confidence 99998888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCcchhHHHHHHHhhhhccCChhhhhhhcCCChhhhhhhhhcCchhHHHHHHHHHHHhhhhcccchHHHHH
Q 001331 673 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCIT 752 (1099)
Q Consensus 673 p~Ct~~~~P~~~~Hci~wAr~~F~~lF~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~c~~ 752 (1099)
|+||+++||+.++|||+|||++|+++|+..++++++|+ |+||++
T Consensus 161 P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~~~~~~~~------------------------------------~~~c~~ 204 (435)
T cd01490 161 PLCTLKNFPNAIEHTIQWARDEFEGLFKQPPENVNQYL------------------------------------FEDCVR 204 (435)
T ss_pred CCccccCCCCCchHHHHHHHHHHHHHhccchHHHHHhh------------------------------------HHHHHH
Confidence 99999999999999999999999999999887766443 678999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCChH
Q 001331 753 WARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPK 832 (1099)
Q Consensus 753 ~a~~~f~~~F~~~i~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~ 832 (1099)
||+.+|+++|+++|+|||++||+|+++++|++||+|+||+|+|++||++|+.|+.||.++|+|+|++||++
T Consensus 205 ~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~--------- 275 (435)
T cd01490 205 WARLLFEKYFNNNIKQLLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIP--------- 275 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998752
Q ss_pred HHHHHhhhcCCCCCCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCCCCCCcCCceeeccCCCCchhHHH
Q 001331 833 MLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMI 912 (1099)
Q Consensus 833 ~~~~~~~~~~~~~f~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFI 912 (1099)
.||||||+|+|||||
T Consensus 276 -----------------------------------------------------------------~FeKDdd~n~h~~fi 290 (435)
T cd01490 276 -----------------------------------------------------------------GFEKDDDTNFHMDFI 290 (435)
T ss_pred -----------------------------------------------------------------ccccCCchhHHHHHH
Confidence 099999999999999
Q ss_pred HHHhhhhhhccCCCCccHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhcCCCCcccccccccccccCcccccCCCCC
Q 001331 913 AGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPP 992 (1099)
Q Consensus 913 ~aasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~ 992 (1099)
+|||||||+||+|+++||+++|+||||||||||||||+||||+|+|+||++++..+++.|||+|+|||+|+|.|+||.+|
T Consensus 291 ~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~~~~~~~n~~~nla~p~~~~~~p~~~ 370 (435)
T cd01490 291 TAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKRPLEAYKNAFLNLALPFFAFSEPIPA 370 (435)
T ss_pred HHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCccHHHcchHhhhccCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999878999999999999999999999999
Q ss_pred ccccc-CCcceeEEeEEEcCCCCcHHHHH-HHHHHc-CCceeeeecCCceeecCCCc--chhccc
Q 001331 993 KVIKH-RDMSWTVWDRWILKDNPTLRELI-QWLKDK-GLNAYSISCGSCLLFNSMFP--RHKERM 1052 (1099)
Q Consensus 993 ~~~~~-~~~~~t~Wd~~~v~~~~TL~~li-~~~~~~-~l~~~~i~~g~~~LY~~~~~--~~~~~l 1052 (1099)
++.++ .+.+||+||||++.+++||++|+ ++|+++ |+++.||++|+++||++||| ++++||
T Consensus 371 ~~~~~~~~~~~t~Wdr~~v~~~~t~~~~~~~~~~~~~~~~v~~i~~g~~~ly~~~~~~~~~~~r~ 435 (435)
T cd01490 371 PKVKYAYDEEWTIWDRFEVKGKQTLQELLIDYFKEKYGLEVTMLSQGVSMLYSSFMPPAKLKERL 435 (435)
T ss_pred CccccCCCCEEeeEeEEEEcCCCcHHHHHHHHHHHHhCCeEEEEEeCCeEEEeecCCchhhhhcC
Confidence 98887 78899999999999999999999 999999 99999999999999999986 445664
No 4
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-79 Score=677.75 Aligned_cols=472 Identities=30% Similarity=0.473 Sum_probs=343.4
Q ss_pred HHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhC
Q 001331 504 KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN 583 (1099)
Q Consensus 504 ~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~n 583 (1099)
+.++.+.++||+||||||||||+||+||++|+ ++|+|||.|+|++||||||||||++|||++||.||++.++++|
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf-----~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fn 79 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGF-----EEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFN 79 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcC-----CeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhC
Confidence 45788899999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccceeEEEeCcccccCCC
Q 001331 584 PRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGA 663 (1099)
Q Consensus 584 p~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~~~v~ip~~t~cy~c 663 (1099)
|++++.+++..+.+. -|+.+||++||+|+|||||..||+|+|++|....+|||+|||.|+.|++++++++.||||.|
T Consensus 80 pn~~l~~yhanI~e~---~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC 156 (603)
T KOG2013|consen 80 PNIKLVPYHANIKEP---KFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYEC 156 (603)
T ss_pred CCCceEeccccccCc---chHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecc
Confidence 999999999998764 37789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCCcchhHHHHHH-HhhhhccCChhh-hhhhc-CCChhhhhhh-hhcC-chhHHHHHHHHHHH
Q 001331 664 SRDPPEKQAPMCTVHSFPHNIDHCLTWARS-EFEGLLEKTPAE-VNAYL-SNPVEYTTSM-ANAG-DAQARDNLERVLEC 738 (1099)
Q Consensus 664 ~~~p~~~~~p~Ct~~~~P~~~~Hci~wAr~-~F~~lF~~~~~~-~~~~l-~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~ 738 (1099)
.++|.++++|+|||||.|..++|||+|||+ +|.++|+..... ...-. .+|..-.+.. .... .....+..|+ +
T Consensus 157 ~pK~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er-~-- 233 (603)
T KOG2013|consen 157 IPKPVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKER-R-- 233 (603)
T ss_pred cCCCCCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHH-H--
Confidence 999999999999999999999999999995 699999974321 00001 1222111110 0000 0000011111 0
Q ss_pred hhhhcccchHHHHHHH-------HHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHHHH
Q 001331 739 LDKEKCEIFQDCITWA-------RLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMA 811 (1099)
Q Consensus 739 l~~~~~~~~~~c~~~a-------~~~f~~~F~~~i~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~ 811 (1099)
+.-++|. ..+|.++|.++|..|+.+ ..-|.. +++|.||.|...-..-.
T Consensus 234 ---------~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~----------e~~wk~-r~~p~pl~~~~~i~~~~----- 288 (603)
T KOG2013|consen 234 ---------ESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGM----------EALWKP-RSRPVPLSIAEVISTSL----- 288 (603)
T ss_pred ---------HHHHHHhhccCCChhhhhhHHHHHHHHHHHhh----------hhhccC-CCCCCCcchhhccCCcc-----
Confidence 0112232 347899999999999974 567987 56799998864321110
Q ss_pred HHHHHHHHcCCCCCCCCCChHHHHHHhhhcCCCCCCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCCCC
Q 001331 812 ASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSG 891 (1099)
Q Consensus 812 ~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 891 (1099)
+ .+..+++.+.-+. . .+...|...+. ..++..-++.| ....+..
T Consensus 289 -----------~---------t~ns~~q~~~~a~----~-----~~~~v~~v~~~----~~vf~~~i~~l---~~~~~~~ 332 (603)
T KOG2013|consen 289 -----------E---------TINSIVQSITSAQ----L-----NDQNVWTVDEG----AVVFRLSIQAL---DLRCPKE 332 (603)
T ss_pred -----------c---------cccchhhhccccc----c-----CCcceeeeccc----cHHHHHHHHHh---cccCCcc
Confidence 0 0011111000000 0 01111211111 11122222222 1111111
Q ss_pred CCcCCceeeccCCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhcCCCCccc
Q 001331 892 FRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLED 971 (1099)
Q Consensus 892 ~~~~p~~FeKDDd~n~hidFI~aasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~~~~~ 971 (1099)
..---+.|+|||.+ .|+||+||||+||+.|+||..+.|++|.|||+||||||||||+|||++|+|.+|+|++ ++.+
T Consensus 333 ~~h~~l~fdKdd~~--~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~eaiKvl~~--~~~~ 408 (603)
T KOG2013|consen 333 SDHWYLIFDKDDAS--TMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEAIKVLGG--DFDD 408 (603)
T ss_pred CCCceEEEcCCcHH--HHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhhhhHHHHHHHHHHHHHhcc--chhc
Confidence 11123789999987 8999999999999999999999999999999999999999999999999999999977 4788
Q ss_pred ccccccccccC-------cccccCCCCCcccccCCcceeEEeEEEcC-CCCcHHHHHHHH-HHc-CCceeeeec-CCcee
Q 001331 972 YRNTFANLALP-------LFSMAEPVPPKVIKHRDMSWTVWDRWILK-DNPTLRELIQWL-KDK-GLNAYSISC-GSCLL 1040 (1099)
Q Consensus 972 ~rn~f~nla~p-------~~~~~eP~~~~~~~~~~~~~t~Wd~~~v~-~~~TL~~li~~~-~~~-~l~~~~i~~-g~~~L 1040 (1099)
++++|++-... ...+.+|.|.+..+.... -.+.+. ..+||..|.|.+ +.+ ++ .+.||. ...++
T Consensus 409 ~~~~f~~~~~n~r~r~l~~~~~~~PNp~C~vCs~~~-----~~l~ln~~~~~~~~L~D~ivk~r~~~-~pdvsll~~~Li 482 (603)
T KOG2013|consen 409 CNMIFLAKRPNPRKRVLLPWALRPPNPNCPVCSEVP-----LVLELNTRKSTLRDLVDKIVKTRLGY-LPDVSLLDDDLI 482 (603)
T ss_pred ceeeEEccCCCccceeecccccCCCCCCCccccccc-----eEEEeccccchHHHHHHHHHHHHhcc-Ccccchhhhhhc
Confidence 99999854332 234455555554432221 123333 378999999986 555 77 444432 24455
Q ss_pred ecCCCcchhccccCcHHHHH
Q 001331 1041 FNSMFPRHKERMDKKVVDLA 1060 (1099)
Q Consensus 1041 Y~~~~~~~~~~l~~~l~~l~ 1060 (1099)
|+. ..+++++|+|+||-
T Consensus 483 ~~~---d~e~n~~k~lsel~ 499 (603)
T KOG2013|consen 483 DDM---DFEDNLDKTLSELG 499 (603)
T ss_pred ccc---cchhhhhhhHHhhC
Confidence 553 45789999999993
No 5
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=5.1e-75 Score=648.74 Aligned_cols=304 Identities=39% Similarity=0.661 Sum_probs=281.5
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 592 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 592 (1099)
||+||||||+|||++|+||++|+ |+|+|+|+|+||.|||+|||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-----g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~ 75 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-----GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYH 75 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-----CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccceeEEEeCcccccCCCCCCCCCCCC
Q 001331 593 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 672 (1099)
Q Consensus 593 ~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~~~v~ip~~t~cy~c~~~p~~~~~ 672 (1099)
.++.+. .++.+||+++|+||+|+||.++|++++++|+.+++|+|++|+.|++|++++++|+.|+||.|..+++++++
T Consensus 76 ~~i~~~---~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~ 152 (312)
T cd01489 76 ANIKDP---DFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTF 152 (312)
T ss_pred ccCCCc---cchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcC
Confidence 988753 35578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCcchhHHHHHHHhhhhccCChhhhhhhcCCChhhhhhhhhcCchhHHHHHHHHHHHhhhhcccchHHHHH
Q 001331 673 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCIT 752 (1099)
Q Consensus 673 p~Ct~~~~P~~~~Hci~wAr~~F~~lF~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~c~~ 752 (1099)
|+||++++|+.++|||+|||++|+
T Consensus 153 pictI~~~p~~~~hci~~a~~~f~-------------------------------------------------------- 176 (312)
T cd01489 153 PVCTIRSTPSQPIHCIVWAKSLFF-------------------------------------------------------- 176 (312)
T ss_pred CcceecCCCCCCEeehhHHHHHHH--------------------------------------------------------
Confidence 999999999999999999999774
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCChH
Q 001331 753 WARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPK 832 (1099)
Q Consensus 753 ~a~~~f~~~F~~~i~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~ 832 (1099)
+|+++|+++|+||+++ ++||+++| +|+|++|+.
T Consensus 177 ----~~~~~f~~~i~~l~~~----------~~~w~~~~-~p~p~~~~~-------------------------------- 209 (312)
T cd01489 177 ----LFNKVFKDDIERLLSM----------EELWKTRK-PPVPLSWKE-------------------------------- 209 (312)
T ss_pred ----HHHHHHHHHHHHHHhh----------hhhhcCCC-CCCCCCCCC--------------------------------
Confidence 5789999999999985 78999977 899987652
Q ss_pred HHHHHhhhcCCCCCCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCCCCCCcCCceeeccCCCCchhHHH
Q 001331 833 MLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMI 912 (1099)
Q Consensus 833 ~~~~~~~~~~~~~f~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFI 912 (1099)
++|||||++ ||+||
T Consensus 210 ----------------------------------------------------------------~~fdkDd~~--~~~~v 223 (312)
T cd01489 210 ----------------------------------------------------------------LTFDKDDQD--ALDFV 223 (312)
T ss_pred ----------------------------------------------------------------cCcCCCCHH--HHHHH
Confidence 248999998 99999
Q ss_pred HHHhhhhhhccCCCCccHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhcCCCCcccccccccccccC----cccccC
Q 001331 913 AGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALP----LFSMAE 988 (1099)
Q Consensus 913 ~aasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p----~~~~~e 988 (1099)
+|+|||||+||+||..+++++|+|||||||||||||||||||+++|++|++.+. ++.|||+|+|+.-+ ++...+
T Consensus 224 ~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 301 (312)
T cd01489 224 AAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGD--KEQCRTVFLNLQPNRRKRLLVPCK 301 (312)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhh--HHHhhhHhhhcccCCCCcEecCCC
Confidence 999999999999999999999999999999999999999999999999999984 68999999997533 456666
Q ss_pred CCCCccc
Q 001331 989 PVPPKVI 995 (1099)
Q Consensus 989 P~~~~~~ 995 (1099)
|.+|.+.
T Consensus 302 ~~~~n~~ 308 (312)
T cd01489 302 LDPPNPN 308 (312)
T ss_pred CCCcCCC
Confidence 6666543
No 6
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=2.4e-71 Score=612.34 Aligned_cols=285 Identities=58% Similarity=0.974 Sum_probs=279.8
Q ss_pred HhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHH
Q 001331 96 LHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQ 175 (1099)
Q Consensus 96 ~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~ 175 (1099)
+|||||++||.++|+||++++|||+|+||+|+|+||||+|+|||+|+|+|++.|+.+||+||||++++|+|++||+++++
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~ 80 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQA 80 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEecCCChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEcCCceEEEcC
Q 001331 176 KLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDV 255 (1099)
Q Consensus 176 ~L~eLNp~V~v~~~~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~~~v~d~ 255 (1099)
+|++|||+|+|+++...++++++.+||+||+|+++.+.+.++|++||+++ ||||.+++.|++|++|+|||++|.|.|.
T Consensus 81 ~L~eLNp~V~V~~~~~~~~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~--ipfI~a~~~G~~G~vf~dfg~~f~~~d~ 158 (286)
T cd01491 81 RLAELNPYVPVTVSTGPLTTDELLKFQVVVLTDASLEDQLKINEFCHSPG--IKFISADTRGLFGSIFCDFGDEFTVYDP 158 (286)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHcC--CEEEEEeccccEEEEEecCCCeEEEeCC
Confidence 99999999999999998999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCCcceeecccccCCCceeeeccccccccccCCeeEEEEeecccccCCCCCccccccCCceeeeccccccccceeecc
Q 001331 256 DGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGG 335 (1099)
Q Consensus 256 ~ge~p~~~~i~~I~~~~~~lv~~~~~~~~~~~dgd~v~f~ev~gm~eln~~~~~~i~~~~~~~f~i~~Dt~~f~~y~~gg 335 (1099)
+||+|.+++|.+|+++.+++|+++++.+|+++|||+|+|+||+||+++|+++|++|+++++|+|+| +||+.|++|++||
T Consensus 159 ~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~v~~~~~~~f~i-~d~~~~~~y~~gG 237 (286)
T cd01491 159 NGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGCEPRKIKVKGPYTFSI-GDTSSFSEYIRGG 237 (286)
T ss_pred CCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCCccEEEEECCCCeEEE-CcCcCcCccccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred eEEEeeCCeeecccchHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 001331 336 IVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESL 415 (1099)
Q Consensus 336 ~~~qvk~p~~i~f~sL~e~l~~p~~~l~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~l~~~a~~i~~~~ 415 (1099)
+++|||
T Consensus 238 ~~~qvK-------------------------------------------------------------------------- 243 (286)
T cd01491 238 IVTQVK-------------------------------------------------------------------------- 243 (286)
T ss_pred EEEEEe--------------------------------------------------------------------------
Confidence 999998
Q ss_pred CCCCCCCCCHHHHHHHHhhcccccCchhhhhhhhhhHHHHHhhcCCccccceeeeeccCCCCCCC
Q 001331 416 GDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTE 480 (1099)
Q Consensus 416 ~~~~~~~i~~~~i~~~a~~~~~el~pvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~~e~l~~~ 480 (1099)
++||||++||++||||||+|||||+|++||||||++|+||..
T Consensus 244 -----------------------~~~~~~~~g~~~~q~~~~~~~~~~~p~~q~~~~~~~~~l~~~ 285 (286)
T cd01491 244 -----------------------LSPMAAFFGGLAAQEVLKACSGKFTPLKQWLYFDALECLPED 285 (286)
T ss_pred -----------------------cccHHHHhhhHHHHHHHHHcCCCCCceeeEEEecHHHhcCCC
Confidence 889999999999999999999999999999999999999863
No 7
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=4.6e-63 Score=534.07 Aligned_cols=175 Identities=49% Similarity=0.843 Sum_probs=168.2
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 592 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 592 (1099)
||+|||+||+|||++|+|+++|+ |+|+|+|+|+||.|||||||||+++|||++|+++|+++++++||+++|+++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-----g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~ 75 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-----GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQ 75 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccceeEEEeCcccccCCCCCCCCCCCC
Q 001331 593 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 672 (1099)
Q Consensus 593 ~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~~~v~ip~~t~cy~c~~~p~~~~~ 672 (1099)
.++.++ ..++++|++++|+||+|+||.++|++++++|+.+++|+|++|+.|++|++++++|+.|+||.|..+|+++++
T Consensus 76 ~~i~~~--~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~ 153 (234)
T cd01484 76 NKVGPE--QDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNF 153 (234)
T ss_pred ccCChh--hhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCC
Confidence 998653 346678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCcchhHHHHHHH
Q 001331 673 PMCTVHSFPHNIDHCLTWARSE 694 (1099)
Q Consensus 673 p~Ct~~~~P~~~~Hci~wAr~~ 694 (1099)
|+||+++||+.++|||+||+++
T Consensus 154 p~Cti~~~P~~~~hci~~a~~~ 175 (234)
T cd01484 154 PMCTIASMPRLPEHCIEWARML 175 (234)
T ss_pred CccccCCCCCCchHHHHHHHHH
Confidence 9999999999999999999974
No 8
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-58 Score=493.00 Aligned_cols=345 Identities=27% Similarity=0.495 Sum_probs=279.0
Q ss_pred CHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHh
Q 001331 502 GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATS 581 (1099)
Q Consensus 502 G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~ 581 (1099)
+.+..+.|.+.+|+|+||||+|||++||||++|+ +.++|||||+|++|||||||||++.|||++||++||+.+++
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF-----~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~ 105 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGF-----RQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNR 105 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhcc-----ceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHh
Confidence 5678899999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccc---c-------ccEEEcCcCcccceeE
Q 001331 582 INPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF---Q-------KPLLESGTLGAKCNTQ 651 (1099)
Q Consensus 582 ~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~---~-------~Pli~sgt~G~~G~~~ 651 (1099)
..|+..|.+|..++.+ ++.+|+++||+||++||+++||+|||.+.+.. + +||||+|+.|+|||+.
T Consensus 106 Rvp~~~v~~h~~kIqd-----~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~ar 180 (422)
T KOG2015|consen 106 RVPGCVVVPHRQKIQD-----KPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHAR 180 (422)
T ss_pred hCCCcEEeeeecchhc-----CCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeE
Confidence 9999999999999876 45789999999999999999999999887653 2 7999999999999999
Q ss_pred EEeCcccccCCCCCC--CCCCCCCcccccCCCCCcchhHHHHHHHhhhhccCChhhhhhhcCCChhhhhhhhhcCchhHH
Q 001331 652 MVIPHLTENYGASRD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQAR 729 (1099)
Q Consensus 652 v~ip~~t~cy~c~~~--p~~~~~p~Ct~~~~P~~~~Hci~wAr~~F~~lF~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 729 (1099)
+++|+.|.|+.|+.| ||+.++|+||+.|.|..++|||+|++-
T Consensus 181 vI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~l------------------------------------ 224 (422)
T KOG2015|consen 181 VIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKL------------------------------------ 224 (422)
T ss_pred EEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhh------------------------------------
Confidence 999999999999987 888889999999999999999999663
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHH
Q 001331 730 DNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFV 809 (1099)
Q Consensus 730 ~~l~~~~~~l~~~~~~~~~~c~~~a~~~f~~~F~~~i~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi 809 (1099)
++|.+ -.|--..++++|+.
T Consensus 225 ---------------------iqwpe-----------------------------------~~~~g~~~~gdd~~----- 243 (422)
T KOG2015|consen 225 ---------------------IQWPE-----------------------------------LNPFGVPLDGDDPE----- 243 (422)
T ss_pred ---------------------hcchh-----------------------------------hCccCCCCCCCCHH-----
Confidence 12222 00111123333333
Q ss_pred HHHHHHHHHHcCCCCCCCCCChHHHHHHhhhcCCCCCCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCC
Q 001331 810 MAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLP 889 (1099)
Q Consensus 810 ~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 889 (1099)
T Consensus 244 -------------------------------------------------------------------------------- 243 (422)
T KOG2015|consen 244 -------------------------------------------------------------------------------- 243 (422)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCceeeccCCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 001331 890 SGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKL 969 (1099)
Q Consensus 890 ~~~~~~p~~FeKDDd~n~hidFI~aasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~~~ 969 (1099)
||+||.--+|.||.-|+|+.+++..+.++..+||||+|||||+||+.+|.|++|++....
T Consensus 244 ------------------hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~-- 303 (422)
T KOG2015|consen 244 ------------------HIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATD-- 303 (422)
T ss_pred ------------------HHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcc--
Confidence 666666667777778888888888999999999999999999999999999999998643
Q ss_pred ccccccccccccCcccccCCCCCcccccCC-cceeE----EeEEEcCCCCcHHHHHHHHHHc-CCceeeeecC-Cceeec
Q 001331 970 EDYRNTFANLALPLFSMAEPVPPKVIKHRD-MSWTV----WDRWILKDNPTLRELIQWLKDK-GLNAYSISCG-SCLLFN 1042 (1099)
Q Consensus 970 ~~~rn~f~nla~p~~~~~eP~~~~~~~~~~-~~~t~----Wd~~~v~~~~TL~~li~~~~~~-~l~~~~i~~g-~~~LY~ 1042 (1099)
.|-+-|+| |...+.....++.... ..+.+ -..+.+....||+++++++.+. +++.+.++.. ...||.
T Consensus 304 -~~~~Nym~-----~n~~eG~ytytf~~er~~nC~vCS~~~~~~~ispt~tl~~vl~~ls~~~~lk~p~~tt~~~~~ly~ 377 (422)
T KOG2015|consen 304 -DPLDNYMN-----YNAEEGIYTYTFLLERDKNCPVCSNLVQNYDISPTVTLEDVLNHLSKSFQLKSPALTTAAGRTLYL 377 (422)
T ss_pred -hhhhhhee-----eecccceeEEEeeeccCCCCccccCCCcccccCCcccHHHHHHHhhhhhccCCchhhhhhcceEee
Confidence 33344443 2333333222222110 00100 1123455578999999999988 9999988643 378999
Q ss_pred CCCc----chhccccCcHHHH
Q 001331 1043 SMFP----RHKERMDKKVVDL 1059 (1099)
Q Consensus 1043 ~~~~----~~~~~l~~~l~~l 1059 (1099)
+++| .+++||.++|.||
T Consensus 378 ~~~~~~e~~t~~nl~~~l~~l 398 (422)
T KOG2015|consen 378 SSVPSIEEATRKNLSQSLKEL 398 (422)
T ss_pred cCCcHHHHHhhhhhhhhHHHh
Confidence 9987 4478899999998
No 9
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1e-57 Score=504.50 Aligned_cols=249 Identities=32% Similarity=0.596 Sum_probs=225.8
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 592 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 592 (1099)
||+||||||+|||++|+||++|| |+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv-----g~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~ 75 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF-----RNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHF 75 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccc--------cccEEEcCcCcccceeEEEeCcccccCCCC
Q 001331 593 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF--------QKPLLESGTLGAKCNTQMVIPHLTENYGAS 664 (1099)
Q Consensus 593 ~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~--------~~Pli~sgt~G~~G~~~v~ip~~t~cy~c~ 664 (1099)
.++.+ ++++|++++|+||+|+||+++|+++++.|... ++|+|++|+.|++|++++++|+.|+||.|.
T Consensus 76 ~~i~~-----~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~ 150 (291)
T cd01488 76 GKIQD-----KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECS 150 (291)
T ss_pred cccCc-----hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccC
Confidence 88865 34689999999999999999999999998764 499999999999999999999999999998
Q ss_pred CC--CCCCCCCcccccCCCCCcchhHHHHHHHhhhhccCChhhhhhhcCCChhhhhhhhhcCchhHHHHHHHHHHHhhhh
Q 001331 665 RD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKE 742 (1099)
Q Consensus 665 ~~--p~~~~~p~Ct~~~~P~~~~Hci~wAr~~F~~lF~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 742 (1099)
.+ |+++++|+||+++||+.++|||+||+.+
T Consensus 151 ~d~~p~~~~~p~Cti~~~P~~~~hci~~a~~~------------------------------------------------ 182 (291)
T cd01488 151 LDLFPPQVTFPLCTIANTPRLPEHCIEYASLI------------------------------------------------ 182 (291)
T ss_pred CCCCCCCCCCCcccccCCCCCcchheeeeeee------------------------------------------------
Confidence 77 7778899999999999999999998862
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHHHHHHHHHHHHcCC
Q 001331 743 KCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGI 822 (1099)
Q Consensus 743 ~~~~~~~c~~~a~~~f~~~F~~~i~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i 822 (1099)
. |+..+ |.
T Consensus 183 ---------~---------------------------------~~~~~--~~---------------------------- 190 (291)
T cd01488 183 ---------Q---------------------------------WPKEF--PF---------------------------- 190 (291)
T ss_pred ---------e---------------------------------ccccc--CC----------------------------
Confidence 0 11100 00
Q ss_pred CCCCCCCChHHHHHHhhhcCCCCCCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCCCCCCcCCceeecc
Q 001331 823 PIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKD 902 (1099)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKD 902 (1099)
..|++|
T Consensus 191 --------------------------------------------------------------------------~~~~~d 196 (291)
T cd01488 191 --------------------------------------------------------------------------VPLDGD 196 (291)
T ss_pred --------------------------------------------------------------------------CcCCCC
Confidence 025566
Q ss_pred CCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhcCCC
Q 001331 903 DDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGH 967 (1099)
Q Consensus 903 Dd~n~hidFI~aasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~ 967 (1099)
|+. ||+||+..|+.||.+|+|+..++..+++++||||||||||||+|||++|.|++|++.+..
T Consensus 197 ~~~--~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~ 259 (291)
T cd01488 197 DPE--HIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCY 259 (291)
T ss_pred CHH--HHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccc
Confidence 554 999999999999999999999999999999999999999999999999999999999754
No 10
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=7.5e-55 Score=506.00 Aligned_cols=368 Identities=26% Similarity=0.415 Sum_probs=281.7
Q ss_pred hHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHH
Q 001331 95 DLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 174 (1099)
Q Consensus 95 ~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~ 174 (1099)
.|||||+|+||.+||++|++++|||+|+||+|+|++|||+|+|||+|||+|++.|+.+||++|||++++|+|++||++++
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~ 80 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATC 80 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEecCCC------hhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEcCC
Q 001331 175 QKLQELNNAVVLSTLTSKLT------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGP 248 (1099)
Q Consensus 175 ~~L~eLNp~V~v~~~~~~l~------~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~ 248 (1099)
++|++|||+|+++++.+.++ ++++.+||+||+|.++...+..|+++||+++ ||||++++.|++|+++++++
T Consensus 81 ~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~--iPlI~~~s~G~~G~v~v~~~- 157 (425)
T cd01493 81 ELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSAN--IPLLYVRSYGLYGYIRIQLK- 157 (425)
T ss_pred HHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEecccCEEEEEEEEC-
Confidence 99999999999999987653 4789999999999999999999999999999 99999999999999999998
Q ss_pred ceEEEcCCCCCCcceeecccccCCCceeeeccccccccccC----C--eeE--EEEeecccccCCC-CCccccccCCcee
Q 001331 249 EFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDG----D--LVV--FSEVHGMTELNDG-KPRKIKSARPYSF 319 (1099)
Q Consensus 249 ~~~v~d~~ge~p~~~~i~~I~~~~~~lv~~~~~~~~~~~dg----d--~v~--f~ev~gm~eln~~-~~~~i~~~~~~~f 319 (1099)
+|+|++++++..... .++.+|||++..+.+..+.+-.|. . ++. ..-.+.|..-+++ -|.....+..|+-
T Consensus 158 ~h~i~et~p~~~~~D--LRL~~P~peL~~~~~~~dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g~~p~~~~ek~~f~~ 235 (425)
T cd01493 158 EHTIVESHPDNALED--LRLDNPFPELREHADSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNGQLPSTYKEKKEFRD 235 (425)
T ss_pred CeEEEECCCCCCCcC--cccCCCcHHHHHHHHhcCCccCChhhcCCCCHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 688999998864433 688999999999887654332111 0 110 0111222222222 1222222222211
Q ss_pred ee------ccccccccceeecceEEEeeCCeeecccchHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHH-hCCC
Q 001331 320 TL------EEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSE-LGRF 392 (1099)
Q Consensus 320 ~i------~~Dt~~f~~y~~gg~~~qvk~p~~i~f~sL~e~l~~p~~~l~~d~~k~~~~~~l~~~~~al~~F~~~-~gr~ 392 (1099)
.+ ..|..+|.+-... ...-...+ .+ -.++++.++++.. .+.+ .....+|++.+||.+|.++ +|.+
T Consensus 236 ~i~~~~~~~~~eeNf~EA~~~-~~~~~~~~-~i-~~~v~~~~~~~~~---~~~~--~~~~~fwi~~~alk~F~~~~~g~l 307 (425)
T cd01493 236 LVRSLMRSNEDEENFEEAIKA-VNKALNRT-KI-PSSVEEIFNDDRC---ENLT--SQSSSFWIMARALKEFVAEENGLL 307 (425)
T ss_pred HHHHhcccCCCccchHHHHHH-HHHhhCCC-CC-cHHHHHHHhchhc---ccCC--CCCchHHHHHHHHHHHHHhcCCCC
Confidence 11 1344444442211 00001111 11 1345555554410 1111 2345699999999999988 9999
Q ss_pred CCCCC----------------------HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhhc--------ccccCch
Q 001331 393 PVAGS----------------------EEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGA--------RAVLNPM 442 (1099)
Q Consensus 393 P~~~~----------------------~~D~~~l~~~a~~i~~~~~~~~~~~i~~~~i~~~a~~~--------~~el~pv 442 (1099)
|.++. ..|++++.+++.++....+.. .+.|+++.|+.||+.+ +.--||+
T Consensus 308 Pl~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~-~~~I~~~~i~~FCkna~~l~~i~~~~~~~~~ 386 (425)
T cd01493 308 PLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRS-PDSISDKEIKLFCKNAAFLRVIRGRSLEHNI 386 (425)
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCHHHHHHHHhhHHhhhcccCCcccchH
Confidence 98764 678899999999888877643 4689999999999875 2222999
Q ss_pred hhhhhhhhhHHHHHhhcCCccccceeeeeccCCC
Q 001331 443 AAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVES 476 (1099)
Q Consensus 443 aA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~~e~ 476 (1099)
|||+||+|||||||++|+||+|++|+|+|||+.+
T Consensus 387 ~~~~gg~~aqE~iK~~t~q~vp~~n~~i~dg~~~ 420 (425)
T cd01493 387 SAFMGGIAAQEVIKLITKQYVPIDNTFIFDGIRS 420 (425)
T ss_pred HHHHhHHHHHHHHHHHhccccccCCceEEecccc
Confidence 9999999999999999999999999999999865
No 11
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-54 Score=459.97 Aligned_cols=314 Identities=34% Similarity=0.459 Sum_probs=266.1
Q ss_pred CCchhHhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccch
Q 001331 89 QTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN 168 (1099)
Q Consensus 89 ~~~~~~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~ 168 (1099)
..+.+.++|||||||||.++|++|+++||||+|++|+|+||+|||+|+|||++|++|+..|++.|++.|||+..+++|++
T Consensus 6 lse~E~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~ 85 (331)
T KOG2014|consen 6 LSEQEIALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQT 85 (331)
T ss_pred hhHHHHHHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecCC---ChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEE
Q 001331 169 RALASVQKLQELNNAVVLSTLTSKL---TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD 245 (1099)
Q Consensus 169 Kaea~~~~L~eLNp~V~v~~~~~~l---~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d 245 (1099)
||+++.++|+.|||.|.|.+..+++ +++||.+||+||+++.+.+.+.++|++||+++ |+|+.++++|++||+|+|
T Consensus 86 raeas~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~--i~F~a~d~~g~~Gy~F~d 163 (331)
T KOG2014|consen 86 RAEASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRKLN--IAFYAGDCFGLCGYAFAD 163 (331)
T ss_pred HHHHHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHHhcC--ceEEeccccceeeeeeee
Confidence 9999999999999999999999876 56899999999999999999999999999999 999999999999999999
Q ss_pred cCCceEEEcCCCCCCcceeecccccCCCceeeeccccccccccCCeeEEEEeecccccCCCCCccccccCCceeeecccc
Q 001331 246 FGPEFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDT 325 (1099)
Q Consensus 246 ~g~~~~v~d~~ge~p~~~~i~~I~~~~~~lv~~~~~~~~~~~dgd~v~f~ev~gm~eln~~~~~~i~~~~~~~f~i~~Dt 325 (1099)
+++ |.+.+..-.. ..++ ..+..+ .|.
T Consensus 164 L~~-h~y~~~~~~~------~~~~-----------------------------------~~k~~k------------~~~ 189 (331)
T KOG2014|consen 164 LQE-HKYLEEKTKV------AKVS-----------------------------------QTKRAK------------VDE 189 (331)
T ss_pred hhh-hhhhhhcccc------cccc-----------------------------------ccccee------------eee
Confidence 985 4443311100 0000 000000 011
Q ss_pred ccccceeecceEEEeeCCeeecccchHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Q 001331 326 TNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLI 405 (1099)
Q Consensus 326 ~~f~~y~~gg~~~qvk~p~~i~f~sL~e~l~~p~~~l~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~l~ 405 (1099)
+ +.+-..+.+.|+|+++.|+.++. .....+..|...+|++++.+..|.+.+||.|+.-..+|.+.++
T Consensus 190 ~-----------~~~~vk~~~~~~~~~Eal~~~~~--~k~k~~~rr~~~~~~ll~v~l~f~~s~~r~pg~~~~~d~erl~ 256 (331)
T KOG2014|consen 190 T-----------ETEWVKRKVVFPSVKEALSVDWT--KKEKRKPRRTKKLYFLLPVLLKFRTSEGRDPGETSEEDLERLL 256 (331)
T ss_pred c-----------cceehhhhhcccCHHHHHhcccc--hhhhhhhhccCcceehHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 0 01122357889999999997742 1122345677889999999999999999999966799999999
Q ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHhhcccccCchhhhhhhhhhHHHHHhhcCCccccceeeeeccCCCC
Q 001331 406 SVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESL 477 (1099)
Q Consensus 406 ~~a~~i~~~~~~~~~~~i~~~~i~~~a~~~~~el~pvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~~e~l 477 (1099)
.+.+++++.. .-+++.++ +|..+...+++|+||++||++||||||+||++-.|++|||||||+++.
T Consensus 257 ~I~~ell~s~-----~i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~Nff~fdg~~g~ 322 (331)
T KOG2014|consen 257 QIRNELLESE-----TIIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNNFFIFDGETGK 322 (331)
T ss_pred HHHHhhcccc-----ccCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccceEEeecccCc
Confidence 9999988732 23566677 888999999999999999999999999999999999999999999885
No 12
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-53 Score=471.71 Aligned_cols=377 Identities=26% Similarity=0.404 Sum_probs=291.8
Q ss_pred hHhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHH
Q 001331 93 DEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALA 172 (1099)
Q Consensus 93 ~~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea 172 (1099)
...+||||+|+||.+||..|..++||++|+|++|+|++|||||+|||+||++|...|..+|++.|||+..+++|++||++
T Consensus 6 ~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a 85 (523)
T KOG2016|consen 6 PKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEA 85 (523)
T ss_pred hhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEecCC------ChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEc
Q 001331 173 SVQKLQELNNAVVLSTLTSKL------TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 246 (1099)
Q Consensus 173 ~~~~L~eLNp~V~v~~~~~~l------~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~ 246 (1099)
+++.|++|||.|......+.. +++++++|++||.+..+.+...++.++||+++ ||++.+.++|+.|+++...
T Consensus 86 ~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~--vpll~~rs~Gl~G~iRI~i 163 (523)
T KOG2016|consen 86 TLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREAN--VPLLLTRSYGLAGTIRISI 163 (523)
T ss_pred HHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcC--CceEEEeeecceEEEEEEe
Confidence 999999999999999887653 45799999999999999999999999999999 9999999999999999999
Q ss_pred CCceEEEcCCCCCCcceeecccccCCCceeeeccccccccccCC------eeE--------------------------E
Q 001331 247 GPEFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGD------LVV--------------------------F 294 (1099)
Q Consensus 247 g~~~~v~d~~ge~p~~~~i~~I~~~~~~lv~~~~~~~~~~~dgd------~v~--------------------------f 294 (1099)
. +|++++.+++.|... .++.+|||++..+++..+++..+-. ++. |
T Consensus 164 k-EH~iieshPD~~~~D--LRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~n~~~p~t~~ekk~f 240 (523)
T KOG2016|consen 164 K-EHTIIESHPDNPLDD--LRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQHNGNLPSTYDEKKEF 240 (523)
T ss_pred e-eccccccCCCCcccc--cccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhhcCCCCccHHHHHHH
Confidence 7 599999999988765 7888999999888876554322210 000 0
Q ss_pred EE-ee-cc-c---------------------------c-cCCC-------------------------------------
Q 001331 295 SE-VH-GM-T---------------------------E-LNDG------------------------------------- 306 (1099)
Q Consensus 295 ~e-v~-gm-~---------------------------e-ln~~------------------------------------- 306 (1099)
.+ +. +| + + +++.
T Consensus 241 kd~i~~~~~~~DeeNyeEA~~a~~~Af~~~~i~ssv~dil~d~~c~~~~~~s~~FWim~~aLk~Fv~~e~~g~lPL~Gtl 320 (523)
T KOG2016|consen 241 KDLIRSEMGKADEENYEEAIKAVNKAFAPTQIPSSVKDILHDDRCAQIGKDSSDFWIMAAALKEFVLKEEGGFLPLRGTL 320 (523)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHhcccCCchhHHHHhcChHHHHhcCCCcHHHHHHHHHHHHHcccCCCccCCCCCC
Confidence 00 00 00 0 0 0000
Q ss_pred ------CCccccccCCceeeeccccccccceee------cceEEEeeC------------CeeecccchHHhhcCCCCc-
Q 001331 307 ------KPRKIKSARPYSFTLEEDTTNYGTYVK------GGIVTQVKQ------------PKVLNFKPLREALEDPGDF- 361 (1099)
Q Consensus 307 ------~~~~i~~~~~~~f~i~~Dt~~f~~y~~------gg~~~qvk~------------p~~i~f~sL~e~l~~p~~~- 361 (1099)
+...|+.+..|.-+.+.|.-.+.++++ |.-..-+.. -++++|+++++... |...
T Consensus 321 PDM~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~-~s~~~ 399 (523)
T KOG2016|consen 321 PDMTSSTEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYE-KSITE 399 (523)
T ss_pred CccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhc-ccchh
Confidence 001111222221111111111111110 000011111 25778888888887 4211
Q ss_pred --ccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhhcccc
Q 001331 362 --LLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGS-EEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAV 438 (1099)
Q Consensus 362 --l~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~-~~D~~~l~~~a~~i~~~~~~~~~~~i~~~~i~~~a~~~~~e 438 (1099)
..++.........+|+++||+++|..++|++||... +.|+..+..++..++..++... ..+.++.+.+|||++++|
T Consensus 400 ~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG~~~v~~D~~~lks~a~~~lse~g~~~-~~v~d~~i~E~cR~gaaE 478 (523)
T KOG2016|consen 400 LIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPGEGPVEIDITKLKSIAASLLSELGLDG-NAVTDDAIHEICRFGAAE 478 (523)
T ss_pred hhhhccccccchhHHHHHHHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHHHhccCc-ccCcHHHHHHHHhcCCch
Confidence 111111123356799999999999999999999432 7899999999999999987542 468899999999999999
Q ss_pred cCchhhhhhhhhhHHHHHhhcCCccccceeeeeccCCC
Q 001331 439 LNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVES 476 (1099)
Q Consensus 439 l~pvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~~e~ 476 (1099)
+|.|+||+||+|||||||+||+||+||+|+|+|||++.
T Consensus 479 lH~VsAfiGGiaaQEvIKLiTkQyvPidNTFIfnGi~~ 516 (523)
T KOG2016|consen 479 LHVVSAFIGGIAAQEVIKLITKQYVPIDNTFIFNGITQ 516 (523)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhceecccceeEeccccc
Confidence 99999999999999999999999999999999999865
No 13
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=1.4e-37 Score=329.49 Aligned_cols=149 Identities=40% Similarity=0.675 Sum_probs=142.7
Q ss_pred hHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHH
Q 001331 95 DLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 174 (1099)
Q Consensus 95 ~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~ 174 (1099)
+|||||+++||.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||++++|+|++||++++
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~ 81 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASL 81 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEecCCC---hhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEE
Q 001331 175 QKLQELNNAVVLSTLTSKLT---KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD 245 (1099)
Q Consensus 175 ~~L~eLNp~V~v~~~~~~l~---~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d 245 (1099)
++|+++||+++|+.+...++ ++++++||+||+|.++.+.+..++++||+++ +|||.+++.|++|++|+|
T Consensus 82 ~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~--ip~i~~~~~G~~G~v~~d 153 (197)
T cd01492 82 ERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLG--VKFYATGVHGLFGFVFAD 153 (197)
T ss_pred HHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEecCCEEEEEEe
Confidence 99999999999999887664 3678999999999999999999999999999 999999999999998853
No 14
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1e-36 Score=323.28 Aligned_cols=149 Identities=40% Similarity=0.627 Sum_probs=141.9
Q ss_pred HhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCC--CcccchHHHHH
Q 001331 96 LHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSD--NDIGKNRALAS 173 (1099)
Q Consensus 96 ~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~--~diGk~Kaea~ 173 (1099)
+||||+++||.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+|++||||+++ +|+|++||+++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~ 80 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAAS 80 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHhCCCcEEEEEecCCC------hhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEc
Q 001331 174 VQKLQELNNAVVLSTLTSKLT------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 246 (1099)
Q Consensus 174 ~~~L~eLNp~V~v~~~~~~l~------~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~ 246 (1099)
+++|+++||+|+|+.....+. ++++++||+||+|.++.+.+..+|++|++++ +|||.+++.|++|++|+|+
T Consensus 81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~--ip~i~~~~~G~~G~v~~~~ 157 (198)
T cd01485 81 YEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHH--IPFISCATYGLIGYAFFDF 157 (198)
T ss_pred HHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeecCEEEEEEch
Confidence 999999999999999887663 3578999999999999999999999999999 9999999999999988654
No 15
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=3.2e-36 Score=331.18 Aligned_cols=181 Identities=27% Similarity=0.378 Sum_probs=166.0
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccch
Q 001331 491 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 570 (1099)
Q Consensus 491 ~~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~ 570 (1099)
.+||+||+.+||.++|++|++++|+||||||+||+++++||++|| |+|+|+|+|+||.||||||++|+.+|||++
T Consensus 7 ~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGV-----G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~ 81 (287)
T PRK08223 7 DEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGI-----GKFTIADFDVFELRNFNRQAGAMMSTLGRP 81 (287)
T ss_pred HHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCC-----CeEEEEeCCCcchhccccccCcChhHCCCc
Confidence 589999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCch--HHHHHHHhhcccccccEEEcCcCcccc
Q 001331 571 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNV--NARLYVDQRCLYFQKPLLESGTLGAKC 648 (1099)
Q Consensus 571 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~--~ar~~i~~~c~~~~~Pli~sgt~G~~G 648 (1099)
|+++++++++++||+++|+++...+++++. +++++++|+||||+||+ ++|.++++.|+.+++|+|.+++.|+.|
T Consensus 82 Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~----~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~g 157 (287)
T PRK08223 82 KAEVLAEMVRDINPELEIRAFPEGIGKENA----DAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGT 157 (287)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccCccCH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeE
Confidence 999999999999999999999999987542 57889999999999996 999999999999999999999999999
Q ss_pred eeEEEeCcccccCCCC-CC---CCC---------CCCCcccccCCC
Q 001331 649 NTQMVIPHLTENYGAS-RD---PPE---------KQAPMCTVHSFP 681 (1099)
Q Consensus 649 ~~~v~ip~~t~cy~c~-~~---p~~---------~~~p~Ct~~~~P 681 (1099)
++.++.|+ ++||.|. +. ||+ ...|.|....+.
T Consensus 158 qv~v~~p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl 202 (287)
T PRK08223 158 ALLVFDPG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYL 202 (287)
T ss_pred EEEEEcCC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCcc
Confidence 99999997 8999984 22 333 356778666555
No 16
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=6.3e-36 Score=318.53 Aligned_cols=174 Identities=29% Similarity=0.497 Sum_probs=160.5
Q ss_pred chhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccch
Q 001331 493 RYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 570 (1099)
Q Consensus 493 Rydrqi~l--~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~ 570 (1099)
||+||+++ ||.+.|++|.+++|+|||+||+||+++++|+++|+ |+|+|+|+|.||.+||+|||||+++|||++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv-----~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~ 75 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGV-----GTIVIVDDDHVDLSNLQRQILFTEEDVGRP 75 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEecCCEEcccchhhhhccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCccccee
Q 001331 571 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 650 (1099)
Q Consensus 571 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~~ 650 (1099)
|+++++++++++||+++|+++...+.+++ + .++++++|+||+|+||.++|.++++.|+++++|+|.+|+.|+.|++
T Consensus 76 Ka~~~~~~l~~~np~v~i~~~~~~i~~~~--~--~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~ 151 (202)
T TIGR02356 76 KVEVAAQRLRELNSDIQVTALKERVTAEN--L--ELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQL 151 (202)
T ss_pred HHHHHHHHHHHhCCCCEEEEehhcCCHHH--H--HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEE
Confidence 99999999999999999999998886532 2 4678999999999999999999999999999999999999999999
Q ss_pred EEEeCc-ccccCCCCCCCCCCCCCcc
Q 001331 651 QMVIPH-LTENYGASRDPPEKQAPMC 675 (1099)
Q Consensus 651 ~v~ip~-~t~cy~c~~~p~~~~~p~C 675 (1099)
.++.|+ .++||.|.....+...+.|
T Consensus 152 ~~~~p~~~~~c~~c~~~~~~~~~~~~ 177 (202)
T TIGR02356 152 MVFDPGGEGPCLRCLFPDIADTGPSC 177 (202)
T ss_pred EEEeCCCCCCChhhcCCCCcccCCCC
Confidence 999998 7999999643322234555
No 17
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=6e-35 Score=316.99 Aligned_cols=164 Identities=35% Similarity=0.579 Sum_probs=156.6
Q ss_pred chhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccch
Q 001331 493 RYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 570 (1099)
Q Consensus 493 Rydrqi~l--~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~ 570 (1099)
||+||+++ ||.+.|++|.+++|+||||||+||+++++|+++|| |+|+|+|+|.|+.+||||||||+++|||++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 75 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGV-----GKLGLVDDDVVELSNLQRQILHTEADVGQP 75 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEEcCcccccccccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCccccee
Q 001331 571 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 650 (1099)
Q Consensus 571 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~~ 650 (1099)
|+++++++++++||+++|+.+..++..++ + .++++++|+||+|+|++++|.++++.|+++++|+|++|+.|..|++
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i~~~~--~--~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v 151 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERLDAEN--A--EELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQV 151 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEecceeCHHH--H--HHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEE
Confidence 99999999999999999999998885432 2 4678999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccCCCCC
Q 001331 651 QMVIPHLTENYGASR 665 (1099)
Q Consensus 651 ~v~ip~~t~cy~c~~ 665 (1099)
.+++|+.+.||.|..
T Consensus 152 ~~~~p~~~~c~~c~~ 166 (228)
T cd00757 152 TVFIPGEGPCYRCLF 166 (228)
T ss_pred EEECCCCCCCccccC
Confidence 999999999999954
No 18
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=6.3e-35 Score=319.38 Aligned_cols=165 Identities=32% Similarity=0.494 Sum_probs=156.4
Q ss_pred Cchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccc
Q 001331 492 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 569 (1099)
Q Consensus 492 ~Rydrqi~l--~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~ 569 (1099)
+||+||+++ ||.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|+|.|+.|||+||+||+++|||+
T Consensus 11 ~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~ 85 (245)
T PRK05690 11 LRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGV-----GTLTLVDFDTVSLSNLQRQVLHDDATIGQ 85 (245)
T ss_pred HHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEECcchhhhhhcCChhhCCC
Confidence 799999987 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccce
Q 001331 570 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 649 (1099)
Q Consensus 570 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~ 649 (1099)
+|+++++++++++||+++|+++...+.+++ . +++++++|+||+|+||+++|.++++.|+++++|+|.+++.|+.|+
T Consensus 86 ~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~--~--~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~ 161 (245)
T PRK05690 86 PKVESARAALARINPHIAIETINARLDDDE--L--AALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQ 161 (245)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEeccCCHHH--H--HHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCce
Confidence 999999999999999999999998887532 1 467899999999999999999999999999999999999999999
Q ss_pred eEEEeCcc-cccCCCCC
Q 001331 650 TQMVIPHL-TENYGASR 665 (1099)
Q Consensus 650 ~~v~ip~~-t~cy~c~~ 665 (1099)
+.++.|+. ++||.|..
T Consensus 162 v~~~~~~~~~~c~~c~~ 178 (245)
T PRK05690 162 VTVFTYQDDEPCYRCLS 178 (245)
T ss_pred EEEEecCCCCceeeecc
Confidence 99999875 79999963
No 19
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=9.8e-35 Score=337.68 Aligned_cols=175 Identities=27% Similarity=0.459 Sum_probs=162.2
Q ss_pred Cchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccc
Q 001331 492 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 569 (1099)
Q Consensus 492 ~Rydrqi~l--~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~ 569 (1099)
+||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|+||.|||||||||+++|||+
T Consensus 17 ~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gv-----g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~ 91 (390)
T PRK07411 17 ERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGI-----GRIGIVDFDVVDSSNLQRQVIHGTSWVGK 91 (390)
T ss_pred HHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEecccccCcCcccChHHCCC
Confidence 799999999 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccce
Q 001331 570 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 649 (1099)
Q Consensus 570 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~ 649 (1099)
+|+++++++++++||.++|+++..++.+++. .++++++|+||+|+||+++|.++++.|+++++|+|.+++.|+.|+
T Consensus 92 ~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~----~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~ 167 (390)
T PRK07411 92 PKIESAKNRILEINPYCQVDLYETRLSSENA----LDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQ 167 (390)
T ss_pred cHHHHHHHHHHHHCCCCeEEEEecccCHHhH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEE
Confidence 9999999999999999999999998886432 467899999999999999999999999999999999999999999
Q ss_pred eEEEeCcccccCCCCC-CC-CCCCCCcc
Q 001331 650 TQMVIPHLTENYGASR-DP-PEKQAPMC 675 (1099)
Q Consensus 650 ~~v~ip~~t~cy~c~~-~p-~~~~~p~C 675 (1099)
+.++.|+.++||.|.- .+ +....|.|
T Consensus 168 ~~v~~~~~~~c~~c~~~~~~~~~~~~~c 195 (390)
T PRK07411 168 ATVFNYEGGPNYRDLYPEPPPPGMVPSC 195 (390)
T ss_pred EEEECCCCCCChHHhcCCCCCcccCCCC
Confidence 9998888899999953 32 33334556
No 20
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=314.37 Aligned_cols=164 Identities=30% Similarity=0.476 Sum_probs=156.5
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccc-h
Q 001331 492 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ-A 570 (1099)
Q Consensus 492 ~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~-~ 570 (1099)
+||+||+++||.++|++|++++|+|+||||+||+++++|+++|| |+|+|+|+|.|+.|||+||++|+++|+|+ +
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~ 82 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGV-----GRILLIDEQTPELSNLNRQILHWEEDLGKNP 82 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCccChhhhccccccChhhcCchH
Confidence 79999999999999999999999999999999999999999999 99999999999999999999999999999 6
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCccccee
Q 001331 571 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 650 (1099)
Q Consensus 571 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~~ 650 (1099)
|+++++++++++||+++|+++...+.+++ + +++++++|+||+|+||+++|.++++.|+++++|+|.+|+.|+.|++
T Consensus 83 k~~~a~~~l~~~np~v~v~~~~~~~~~~~--~--~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v 158 (231)
T PRK08328 83 KPLSAKWKLERFNSDIKIETFVGRLSEEN--I--DEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQV 158 (231)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCHHH--H--HHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEE
Confidence 99999999999999999999998876533 2 4688999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccCCCC
Q 001331 651 QMVIPHLTENYGAS 664 (1099)
Q Consensus 651 ~v~ip~~t~cy~c~ 664 (1099)
.+++|+.|+||.|.
T Consensus 159 ~~~~p~~~~c~~~~ 172 (231)
T PRK08328 159 TTIVPGKTKRLREI 172 (231)
T ss_pred EEECCCCCCCHHHh
Confidence 99999999999875
No 21
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=3.2e-34 Score=329.71 Aligned_cols=176 Identities=28% Similarity=0.409 Sum_probs=163.0
Q ss_pred Cchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccc
Q 001331 492 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 569 (1099)
Q Consensus 492 ~Rydrqi~l--~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~ 569 (1099)
+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.|+.|||+|||||+++|||+
T Consensus 7 ~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~ 81 (355)
T PRK05597 7 ARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGV-----GHITIIDDDTVDLSNLHRQVIHSTAGVGQ 81 (355)
T ss_pred hHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcccccccCcccChhHCCC
Confidence 799999999 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccce
Q 001331 570 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 649 (1099)
Q Consensus 570 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~ 649 (1099)
+|+++++++++++||+++|+++..++..++. .++++++|+||+|+||+.+|.++++.|+++++|+|.+++.|+.|+
T Consensus 82 ~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~----~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~ 157 (355)
T PRK05597 82 PKAESAREAMLALNPDVKVTVSVRRLTWSNA----LDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQ 157 (355)
T ss_pred hHHHHHHHHHHHHCCCcEEEEEEeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEE
Confidence 9999999999999999999999988876431 467899999999999999999999999999999999999999999
Q ss_pred eEEEeCcccccCCCC-CC-CCCCCCCccc
Q 001331 650 TQMVIPHLTENYGAS-RD-PPEKQAPMCT 676 (1099)
Q Consensus 650 ~~v~ip~~t~cy~c~-~~-p~~~~~p~Ct 676 (1099)
+.++.|+.++||.|. +. |+....|.|.
T Consensus 158 v~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 186 (355)
T PRK05597 158 LSVFHAGHGPIYEDLFPTPPPPGSVPSCS 186 (355)
T ss_pred EEEEcCCCCCCHHHhCCCCCCccCCCCcc
Confidence 999999889999994 33 3334566774
No 22
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=8.1e-34 Score=309.39 Aligned_cols=166 Identities=30% Similarity=0.454 Sum_probs=153.9
Q ss_pred cCchhhhhhhc--CHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCccc
Q 001331 491 NSRYDAQISVF--GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 568 (1099)
Q Consensus 491 ~~Rydrqi~l~--G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG 568 (1099)
.+||+||+++| |.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|+|.|+.|||+||+||+++|||
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~RQ~l~~~~diG 76 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGV-----GNLTLLDFDTVSLSNLQRQVLHSDANIG 76 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCcccccCcccceeeeHhhCC
Confidence 37999999995 6899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccc
Q 001331 569 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 648 (1099)
Q Consensus 569 ~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G 648 (1099)
++|+++++++++++||+++|+++..++++++ + .++++++|+||+|+||+++|.++++.|+++++|+|.++..|+.|
T Consensus 77 ~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~--~--~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G 152 (240)
T TIGR02355 77 QPKVESAKDALTQINPHIAINPINAKLDDAE--L--AALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEG 152 (240)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEEeccCCHHH--H--HHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEe
Confidence 9999999999999999999999998887532 2 46789999999999999999999999999999999999999999
Q ss_pred eeEEEe-CcccccCCCCC
Q 001331 649 NTQMVI-PHLTENYGASR 665 (1099)
Q Consensus 649 ~~~v~i-p~~t~cy~c~~ 665 (1099)
++.++. +..++||.|..
T Consensus 153 ~v~~~~~~~~~~c~~C~~ 170 (240)
T TIGR02355 153 QVSVFTYQDGEPCYRCLS 170 (240)
T ss_pred EEEEEecCCCCCcccccc
Confidence 988765 44578998864
No 23
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=1.6e-33 Score=298.46 Aligned_cols=152 Identities=24% Similarity=0.453 Sum_probs=144.9
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchH
Q 001331 492 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 571 (1099)
Q Consensus 492 ~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~K 571 (1099)
.|||||+++||.++|++|++++|+|+|+||+|||++|+|+++|| |+|+|+|+|.|+.+||+|||||+++|||++|
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GV-----g~i~lvD~d~ve~snL~rqfl~~~~diG~~K 76 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGI-----GSLTILDDRTVTEEDLGAQFLIPAEDLGQNR 76 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCC-----CEEEEEECCcccHhhCCCCccccHHHcCchH
Confidence 59999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccceeE
Q 001331 572 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQ 651 (1099)
Q Consensus 572 a~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~~~ 651 (1099)
+++++++++++||+++|+++...+.+. +.+||+++|+||+|+|+.++|.++++.|+++++|++.+|+.|+.|++.
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~~~-----~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~ 151 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDISEK-----PEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVF 151 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcccc-----HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEE
Confidence 999999999999999999998877632 357899999999999999999999999999999999999999999976
Q ss_pred EE
Q 001331 652 MV 653 (1099)
Q Consensus 652 v~ 653 (1099)
+.
T Consensus 152 ~d 153 (197)
T cd01492 152 AD 153 (197)
T ss_pred Ee
Confidence 53
No 24
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=2.1e-33 Score=323.66 Aligned_cols=164 Identities=27% Similarity=0.473 Sum_probs=155.4
Q ss_pred Cchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccc
Q 001331 492 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 569 (1099)
Q Consensus 492 ~Rydrqi~l--~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~ 569 (1099)
+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||+++|||+
T Consensus 20 ~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gv-----g~i~ivD~D~ve~sNL~RQ~l~~~~diG~ 94 (370)
T PRK05600 20 RRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGV-----GTITLIDDDTVDVSNIHRQILFGASDVGR 94 (370)
T ss_pred HHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEeCCEEccccccccccCChhHCCC
Confidence 799999999 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccce
Q 001331 570 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 649 (1099)
Q Consensus 570 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~ 649 (1099)
+|+++++++++++||+++|+++..++.+++. .++++++|+||+|+||+++|.++++.|+++++|+|.+++.|+.|+
T Consensus 95 ~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~----~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~ 170 (370)
T PRK05600 95 PKVEVAAERLKEIQPDIRVNALRERLTAENA----VELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGE 170 (370)
T ss_pred HHHHHHHHHHHHHCCCCeeEEeeeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEE
Confidence 9999999999999999999999999875432 467899999999999999999999999999999999999999999
Q ss_pred eEEEeCcc---cccCCCC
Q 001331 650 TQMVIPHL---TENYGAS 664 (1099)
Q Consensus 650 ~~v~ip~~---t~cy~c~ 664 (1099)
+.++.|.. +.||.|.
T Consensus 171 v~v~~~~~~~~~~~~~~l 188 (370)
T PRK05600 171 LAVFNSGPDHRGVGLRDL 188 (370)
T ss_pred EEEEecCCCCCCCCcHhh
Confidence 99988753 6788884
No 25
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=9.8e-32 Score=312.94 Aligned_cols=186 Identities=23% Similarity=0.357 Sum_probs=164.8
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchH
Q 001331 492 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 571 (1099)
Q Consensus 492 ~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~K 571 (1099)
.|||||+++||.++|++|++++|+||||||+|||++|||+++|| |+|+|+|+|.|+.+||+|||+++.+|||++|
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GI-----g~~tIvD~~~V~~sDL~~nFfl~~~diGk~k 75 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGI-----GSFTIVDGSKVDEEDLGNNFFLDASSLGKSR 75 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCC-----CeEEEECCCcCchhhccccccCChhhcCcHH
Confidence 48999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccceeE
Q 001331 572 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQ 651 (1099)
Q Consensus 572 a~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~~~ 651 (1099)
|+++++.|+++||+++++.+...+..-.. .+.+||+++|+||.|.++...+..++++|+..++|+|.+++.|+.|+++
T Consensus 76 A~~~~~~L~eLNp~V~i~~~~e~~~~ll~--~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~ 153 (425)
T cd01493 76 AEATCELLQELNPDVNGSAVEESPEALLD--NDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIR 153 (425)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccchhhh--hHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEE
Confidence 99999999999999999999876543111 2368999999999999999999999999999999999999999999999
Q ss_pred EEeCcccccCCCCCCCCCCCCCcccccCCCCCcchh
Q 001331 652 MVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHC 687 (1099)
Q Consensus 652 v~ip~~t~cy~c~~~p~~~~~p~Ct~~~~P~~~~Hc 687 (1099)
+.+|. ..+..+.+++ ....+...+.||+..+|+
T Consensus 154 v~~~~-h~i~et~p~~--~~~DLRL~~P~peL~~~~ 186 (425)
T cd01493 154 IQLKE-HTIVESHPDN--ALEDLRLDNPFPELREHA 186 (425)
T ss_pred EEECC-eEEEECCCCC--CCcCcccCCCcHHHHHHH
Confidence 99984 3355544333 345566778888887754
No 26
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=4.5e-33 Score=324.52 Aligned_cols=164 Identities=27% Similarity=0.465 Sum_probs=155.4
Q ss_pred Cchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccc
Q 001331 492 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 569 (1099)
Q Consensus 492 ~Rydrqi~l--~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~ 569 (1099)
+||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.||.|||+|||||+++|||+
T Consensus 21 ~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~ 95 (392)
T PRK07878 21 ARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGV-----GTLGIVEFDVVDESNLQRQVIHGQSDVGR 95 (392)
T ss_pred HHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecCcccccccccChhcCCC
Confidence 799999998 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccce
Q 001331 570 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 649 (1099)
Q Consensus 570 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~ 649 (1099)
+|+++++++++++||+++|+++..++..++. .++++++|+||+|+||+.+|.++++.|+.+++|+|.+++.|+.|+
T Consensus 96 ~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~----~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~ 171 (392)
T PRK07878 96 SKAQSARDSIVEINPLVNVRLHEFRLDPSNA----VELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQ 171 (392)
T ss_pred hHHHHHHHHHHHhCCCcEEEEEeccCChhHH----HHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 9999999999999999999999988876431 567899999999999999999999999999999999999999999
Q ss_pred eEEEeCc----ccccCCCC
Q 001331 650 TQMVIPH----LTENYGAS 664 (1099)
Q Consensus 650 ~~v~ip~----~t~cy~c~ 664 (1099)
+.++.++ .++||.|.
T Consensus 172 v~~~~~~~~~~~~~c~~c~ 190 (392)
T PRK07878 172 ASVFWEDAPDGLGLNYRDL 190 (392)
T ss_pred EEEEecCCCCCCCCeeeee
Confidence 9988743 68999995
No 27
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=4.4e-33 Score=308.28 Aligned_cols=182 Identities=21% Similarity=0.322 Sum_probs=164.1
Q ss_pred chhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHH
Q 001331 493 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS 572 (1099)
Q Consensus 493 Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka 572 (1099)
.|+||+++||.++|++|++++|+|+|+||+|||+||||+++|| |+|+|+|.|.++.+||+|||+|+++|||++|+
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGV-----g~itI~D~d~ve~snL~rqf~~~~~dIGk~Ka 75 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGV-----KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRA 75 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCC-----CeEEEEcCCccchhhcccCccCChHHhCHHHH
Confidence 4999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccceeEE
Q 001331 573 TVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQM 652 (1099)
Q Consensus 573 ~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~~~v 652 (1099)
++++++|+++||.++|+++...+ +.++++++|+||+|.|+.++|.+++++|+++++|+|.+++.|+.|++.+
T Consensus 76 ea~~~~L~eLNp~V~V~~~~~~~--------~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~ 147 (286)
T cd01491 76 EASQARLAELNPYVPVTVSTGPL--------TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFC 147 (286)
T ss_pred HHHHHHHHHHCCCCEEEEEeccC--------CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEe
Confidence 99999999999999999997653 2467899999999999999999999999999999999999999999887
Q ss_pred EeCcccccCCCCCC--CCCCCCCcccccCCCCCcchhHHH
Q 001331 653 VIPHLTENYGASRD--PPEKQAPMCTVHSFPHNIDHCLTW 690 (1099)
Q Consensus 653 ~ip~~t~cy~c~~~--p~~~~~p~Ct~~~~P~~~~Hci~w 690 (1099)
..+ +||.|... ++.++++.|.+.+-+..+.||+.=
T Consensus 148 dfg---~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~ 184 (286)
T cd01491 148 DFG---DEFTVYDPNGEEPKSGMISSISKDNPGVVTCLDE 184 (286)
T ss_pred cCC---CeEEEeCCCCCcCCccceeeeecCCceEEEEECC
Confidence 544 56666411 233567888998888888899643
No 28
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=6.4e-33 Score=294.33 Aligned_cols=155 Identities=26% Similarity=0.447 Sum_probs=144.8
Q ss_pred chhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCccccccc--Ccccch
Q 001331 493 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD--WNIGQA 570 (1099)
Q Consensus 493 Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~--~diG~~ 570 (1099)
|||||+++||.++|++|++++|+|||+||+|||++|+|+++|| |+|+|+|+|.|+.+||+|||||++ .|+|++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GV-----g~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~ 75 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGI-----DSITIVDHRLVSTEDLGSNFFLDAEVSNSGMN 75 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEECCcCChhcCcccEecccchhhcCch
Confidence 6999999999999999999999999999999999999999999 999999999999999999999998 899999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCccccee
Q 001331 571 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 650 (1099)
Q Consensus 571 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~~ 650 (1099)
|+++++++++++||+++|+++...+....+ ..++||+++|+||+|.|+..+|.+++++|+++++|+|.+|+.|+.|++
T Consensus 76 Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~--~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v 153 (198)
T cd01485 76 RAAASYEFLQELNPNVKLSIVEEDSLSNDS--NIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYA 153 (198)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccccchh--hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEE
Confidence 999999999999999999999887752112 236789999999999999999999999999999999999999999998
Q ss_pred EEEe
Q 001331 651 QMVI 654 (1099)
Q Consensus 651 ~v~i 654 (1099)
.+..
T Consensus 154 ~~~~ 157 (198)
T cd01485 154 FFDF 157 (198)
T ss_pred EEch
Confidence 7543
No 29
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=5.8e-32 Score=315.18 Aligned_cols=155 Identities=19% Similarity=0.249 Sum_probs=147.5
Q ss_pred CCchhHhHhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccc
Q 001331 89 QTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 166 (1099)
Q Consensus 89 ~~~~~~~~YsRQi~l--~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diG 166 (1099)
+...+.+||+||+++ ||.++|+||++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+|
T Consensus 15 l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG 94 (392)
T PRK07878 15 LTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVG 94 (392)
T ss_pred CCHHHHHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCC
Confidence 345667899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEE
Q 001331 167 KNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 242 (1099)
Q Consensus 167 k~Kaea~~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~v 242 (1099)
++||++++++|+++||+|+|+++...++. +++.+||+||+|.++...+..+|++|++++ +|||++++.|++|++
T Consensus 95 ~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~--~p~v~~~~~g~~G~v 172 (392)
T PRK07878 95 RSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAG--KPYVWGSIYRFEGQA 172 (392)
T ss_pred ChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEE
Confidence 99999999999999999999999888765 578899999999999999999999999999 999999999999999
Q ss_pred EEE
Q 001331 243 FCD 245 (1099)
Q Consensus 243 f~d 245 (1099)
++.
T Consensus 173 ~~~ 175 (392)
T PRK07878 173 SVF 175 (392)
T ss_pred EEE
Confidence 853
No 30
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=99.98 E-value=1.2e-32 Score=313.96 Aligned_cols=165 Identities=30% Similarity=0.460 Sum_probs=156.1
Q ss_pred Cchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCccc-
Q 001331 492 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG- 568 (1099)
Q Consensus 492 ~Rydrqi~l--~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG- 568 (1099)
+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|+|
T Consensus 3 ~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGv-----g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~ 77 (338)
T PRK12475 3 ERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGI-----GKLTIADRDYVEWSNLQRQQLYTEEDAKQ 77 (338)
T ss_pred chhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCcccccccCccccccHHHccC
Confidence 699999988 89999999999999999999999999999999999 9999999999999999999999999985
Q ss_pred -chHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCccc
Q 001331 569 -QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAK 647 (1099)
Q Consensus 569 -~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~ 647 (1099)
++|+++|+++++++||+++|+++...+++++ + +++++++|+||+|+||+++|.+++++|+++++|+|.+|..|+.
T Consensus 78 g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~--~--~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~ 153 (338)
T PRK12475 78 KKPKAIAAKEHLRKINSEVEIVPVVTDVTVEE--L--EELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSY 153 (338)
T ss_pred CccHHHHHHHHHHHHCCCcEEEEEeccCCHHH--H--HHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccE
Confidence 8999999999999999999999988876432 2 4678999999999999999999999999999999999999999
Q ss_pred ceeEEEeCcccccCCCCC
Q 001331 648 CNTQMVIPHLTENYGASR 665 (1099)
Q Consensus 648 G~~~v~ip~~t~cy~c~~ 665 (1099)
|++.+++|+.|+||.|..
T Consensus 154 G~~~~~~P~~tpC~~Cl~ 171 (338)
T PRK12475 154 GVTYTIIPGKTPCLRCLM 171 (338)
T ss_pred EEEEEECCCCCCCHHHhc
Confidence 999999999999999964
No 31
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.98 E-value=6.1e-32 Score=302.63 Aligned_cols=278 Identities=19% Similarity=0.301 Sum_probs=207.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCCCh
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 195 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l~~ 195 (1099)
+|+|+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+|||+++++|||++||++++++|+++||+|+|+++...+++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999887753
Q ss_pred -----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEcCCceEEEc-CCCCCCcceeecccc
Q 001331 196 -----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVD-VDGEDPHTGIIASIS 269 (1099)
Q Consensus 196 -----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~~~v~d-~~ge~p~~~~i~~I~ 269 (1099)
+++++||+||.|.++.+.+..+|++|+.++ +|||.+++.|++|++++++++.+.+.+ ..+++|.+..+..|.
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~--ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pictI~ 158 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAAD--VPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIR 158 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCC--CCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcceec
Confidence 789999999999999999999999999999 999999999999999999998887777 677778788788888
Q ss_pred cCCCceeeeccccccccccCCeeEEEEeecccccCCCCCccccccCCceeeeccccccccceeecceEEEeeCCeeeccc
Q 001331 270 NDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFK 349 (1099)
Q Consensus 270 ~~~~~lv~~~~~~~~~~~dgd~v~f~ev~gm~eln~~~~~~i~~~~~~~f~i~~Dt~~f~~y~~gg~~~qvk~p~~i~f~ 349 (1099)
+.....+++++..++.|+ .|.. + |.-.| ..... ....+..-+.|..+.|.
T Consensus 159 ~~p~~~~hci~~a~~~f~-----~~~~------~-------------f~~~i----~~l~~--~~~~w~~~~~p~p~~~~ 208 (312)
T cd01489 159 STPSQPIHCIVWAKSLFF-----LFNK------V-------------FKDDI----ERLLS--MEELWKTRKPPVPLSWK 208 (312)
T ss_pred CCCCCCEeehhHHHHHHH-----HHHH------H-------------HHHHH----HHHHh--hhhhhcCCCCCCCCCCC
Confidence 777778888765443322 0000 0 00000 00000 00000000111111111
Q ss_pred chHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHH
Q 001331 350 PLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDINTKLLR 429 (1099)
Q Consensus 350 sL~e~l~~p~~~l~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~l~~~a~~i~~~~~~~~~~~i~~~~i~ 429 (1099)
. ..|. ..|.++.+-+.+.++.....++ +...+...++
T Consensus 209 ~--------------------------------~~fd--------kDd~~~~~~v~~~a~lRa~~f~---I~~~~~~~~k 245 (312)
T cd01489 209 E--------------------------------LTFD--------KDDQDALDFVAAAANLRSHVFG---IPMKSRFDIK 245 (312)
T ss_pred C--------------------------------cCcC--------CCCHHHHHHHHHHHHHHHHHcC---CCCCCHHHHH
Confidence 0 0000 0123344444555555555554 3456677788
Q ss_pred HHHhhcccccCchhhhhhhhhhHHHHHhhcCCcccccee
Q 001331 430 HFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQF 468 (1099)
Q Consensus 430 ~~a~~~~~el~pvaA~iGGiaAQEVIKaiTgkf~PI~q~ 468 (1099)
.++...-+.++.+.|+++|++..|++|.++++..-.++.
T Consensus 246 ~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~ 284 (312)
T cd01489 246 QMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTV 284 (312)
T ss_pred HHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhH
Confidence 888888888999999999999999999999986555553
No 32
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.98 E-value=2.4e-32 Score=311.65 Aligned_cols=166 Identities=30% Similarity=0.435 Sum_probs=156.3
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCccc
Q 001331 491 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 568 (1099)
Q Consensus 491 ~~Rydrqi~l--~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG 568 (1099)
++||+||+++ ||.++|++|.+++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|||
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~RQ~l~~~~dig 76 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGV-----GKVTIVDRDYVEWSNLQRQQLYTESDVK 76 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCccCHHHcCccccccHHHhc
Confidence 4799999988 99999999999999999999999999999999999 9999999999999999999999999995
Q ss_pred --chHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcc
Q 001331 569 --QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGA 646 (1099)
Q Consensus 569 --~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~ 646 (1099)
++|+++++++++++||+++|+++...+++++ + .++++++|+||+|+||+++|.++++.|+++++|+|.++..|+
T Consensus 77 ~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~--~--~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~ 152 (339)
T PRK07688 77 NNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEE--L--EELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGS 152 (339)
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHH--H--HHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeee
Confidence 5999999999999999999999998886543 2 467899999999999999999999999999999999999999
Q ss_pred cceeEEEeCcccccCCCCC
Q 001331 647 KCNTQMVIPHLTENYGASR 665 (1099)
Q Consensus 647 ~G~~~v~ip~~t~cy~c~~ 665 (1099)
.|++.+++|+.++||.|..
T Consensus 153 ~G~~~~~~p~~~pC~~Cl~ 171 (339)
T PRK07688 153 YGLSYTIIPGKTPCLRCLL 171 (339)
T ss_pred eeEEEEECCCCCCCeEeec
Confidence 9999999999999999953
No 33
>PRK08223 hypothetical protein; Validated
Probab=99.97 E-value=6.3e-31 Score=289.41 Aligned_cols=155 Identities=16% Similarity=0.156 Sum_probs=146.4
Q ss_pred chhHhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHH
Q 001331 91 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 170 (1099)
Q Consensus 91 ~~~~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Ka 170 (1099)
..-+++|+||+.++|.++|+||++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++||
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kv 83 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKA 83 (287)
T ss_pred ccHHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCCH--HHHHHHHHHHHhcCCCceeEEEeecceeEEEEE
Q 001331 171 LASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISL--DKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 244 (1099)
Q Consensus 171 ea~~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~~--~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~ 244 (1099)
++++++|+++||+++|+++...+++ ++++++|+||+|.|++ +.+..+|+.|++++ +|||++++.|+.|++.+
T Consensus 84 e~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~--iP~V~~~~~g~~gqv~v 161 (287)
T PRK08223 84 EVLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRG--IPALTAAPLGMGTALLV 161 (287)
T ss_pred HHHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcC--CCEEEEeccCCeEEEEE
Confidence 9999999999999999999988865 5688999999999975 89999999999999 99999999999999876
Q ss_pred EcC
Q 001331 245 DFG 247 (1099)
Q Consensus 245 d~g 247 (1099)
-.+
T Consensus 162 ~~p 164 (287)
T PRK08223 162 FDP 164 (287)
T ss_pred EcC
Confidence 553
No 34
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=99.97 E-value=9.4e-31 Score=286.52 Aligned_cols=153 Identities=22% Similarity=0.343 Sum_probs=145.6
Q ss_pred CchhHhHhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccc
Q 001331 90 TDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGK 167 (1099)
Q Consensus 90 ~~~~~~~YsRQi~l--~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk 167 (1099)
.+.+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|+
T Consensus 6 ~~~~~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~ 85 (245)
T PRK05690 6 SDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQ 85 (245)
T ss_pred CHHHHHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCC
Confidence 45566899999988 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEE
Q 001331 168 NRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 243 (1099)
Q Consensus 168 ~Kaea~~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf 243 (1099)
+||++++++|+++||+++|+.+...+++ +++++||+||+|.++.+.+..++++|++++ +|||++++.|+.|++.
T Consensus 86 ~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~--ip~v~~~~~g~~G~v~ 163 (245)
T PRK05690 86 PKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAK--KPLVSGAAIRMEGQVT 163 (245)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhC--CEEEEeeeccCCceEE
Confidence 9999999999999999999999988865 468899999999999999999999999999 9999999999999986
Q ss_pred E
Q 001331 244 C 244 (1099)
Q Consensus 244 ~ 244 (1099)
.
T Consensus 164 ~ 164 (245)
T PRK05690 164 V 164 (245)
T ss_pred E
Confidence 5
No 35
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=99.97 E-value=6.2e-31 Score=280.22 Aligned_cols=149 Identities=27% Similarity=0.430 Sum_probs=143.2
Q ss_pred Hhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHH
Q 001331 96 LHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALAS 173 (1099)
Q Consensus 96 ~YsRQi~l--~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~ 173 (1099)
|||||+++ ||.++|+||++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+++||+|||+++++|+|++||+++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA 80 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHH
Confidence 79999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEc
Q 001331 174 VQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 246 (1099)
Q Consensus 174 ~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~ 246 (1099)
+++|+++||+++++.+...+++ ++++++|+||+|.++.+.+..++++|++++ +|||.+++.|++|+++.-.
T Consensus 81 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~--ip~i~~~~~g~~G~~~~~~ 155 (202)
T TIGR02356 81 AQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALG--TPLISAAVVGFGGQLMVFD 155 (202)
T ss_pred HHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCeEEEEEEe
Confidence 9999999999999999888765 368899999999999999999999999999 9999999999999998644
No 36
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=5.4e-31 Score=306.23 Aligned_cols=164 Identities=29% Similarity=0.530 Sum_probs=155.8
Q ss_pred Cchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccc
Q 001331 492 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 569 (1099)
Q Consensus 492 ~Rydrqi~l--~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~ 569 (1099)
+||+||+.+ ||.+.|++|.+++|+|+||||+||+++++|+++|| |+|+|+|+|.|+.|||+||+||+++|||+
T Consensus 114 ~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gv-----g~i~lvD~d~v~~sNl~Rq~l~~~~diG~ 188 (376)
T PRK08762 114 ERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGV-----GTLGIVDHDVVDRSNLQRQILHTEDRVGQ 188 (376)
T ss_pred HHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEecchhhccccccchhhCCC
Confidence 799999998 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccce
Q 001331 570 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 649 (1099)
Q Consensus 570 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~ 649 (1099)
+|+++++++++++||.++|+++...+.+++ + .++++++|+||+|+||+++|.+++++|+++++|+|.+++.|+.|+
T Consensus 189 ~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~--~--~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~ 264 (376)
T PRK08762 189 PKVDSAAQRLAALNPDVQVEAVQERVTSDN--V--EALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQ 264 (376)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEeccCChHH--H--HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 999999999999999999999988876533 1 467889999999999999999999999999999999999999999
Q ss_pred eEEEeCcc----cccCCCC
Q 001331 650 TQMVIPHL----TENYGAS 664 (1099)
Q Consensus 650 ~~v~ip~~----t~cy~c~ 664 (1099)
+.++.|+. ++||.|.
T Consensus 265 v~~~~p~~~~~~~~c~~c~ 283 (376)
T PRK08762 265 VSVFDAGRQRGQAPCYRCL 283 (376)
T ss_pred EEEEeCCCCCCCCCCHhhc
Confidence 99999876 8999995
No 37
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.97 E-value=5.4e-31 Score=285.11 Aligned_cols=161 Identities=27% Similarity=0.409 Sum_probs=143.5
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCC---C-CCc-cEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhC
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSC---G-NQG-KLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN 583 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~---~-~~g-~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~n 583 (1099)
-+..+|+||||||+||+++++||++|+++ | ++| +|+|+|+|+||.|||||| +|+++|||++||+++++++.+++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence 36789999999999999999999998643 2 123 999999999999999999 68889999999999999999988
Q ss_pred CCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhccc--c-cccEEEcCc--------Ccc-----c
Q 001331 584 PRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY--F-QKPLLESGT--------LGA-----K 647 (1099)
Q Consensus 584 p~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~--~-~~Pli~sgt--------~G~-----~ 647 (1099)
+++|+++..++.++ .++.++|+||+|+||+++|.++++.|++ . .+|++++|+ .|. +
T Consensus 88 -~~~i~a~~~~~~~~-------~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k 159 (244)
T TIGR03736 88 -GTDWTAHPERVERS-------STLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAK 159 (244)
T ss_pred -CceEEEEEeeeCch-------hhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccc
Confidence 89999999888762 2356899999999999999999999988 3 489999999 676 8
Q ss_pred ceeEEEeCcccccCCCCCCC---CCCCCCccccc
Q 001331 648 CNTQMVIPHLTENYGASRDP---PEKQAPMCTVH 678 (1099)
Q Consensus 648 G~~~v~ip~~t~cy~c~~~p---~~~~~p~Ct~~ 678 (1099)
|++++++|++|+||.|..+| ++.+.|+||+.
T Consensus 160 ~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla 193 (244)
T TIGR03736 160 GENRLRLPHVGELFPELIDPSVDPDDDRPSCSLA 193 (244)
T ss_pred cCCceecCCchhhCcccccCccCCCCCCCCchHH
Confidence 99999999999999999888 77899999885
No 38
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=99.97 E-value=1.6e-30 Score=282.42 Aligned_cols=149 Identities=26% Similarity=0.406 Sum_probs=142.9
Q ss_pred Hhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHH
Q 001331 96 LHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALAS 173 (1099)
Q Consensus 96 ~YsRQi~l--~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~ 173 (1099)
|||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+++||+||||++++|+|++||+++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA 80 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence 79999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEc
Q 001331 174 VQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 246 (1099)
Q Consensus 174 ~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~ 246 (1099)
+++|+++||+++|+.+...++. +++.++|+||+|.++.+.+..++++|++++ +|||++++.|+.|++....
T Consensus 81 ~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~--ip~i~~g~~g~~g~v~~~~ 155 (228)
T cd00757 81 AERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLG--KPLVSGAVLGFEGQVTVFI 155 (228)
T ss_pred HHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEEEEEC
Confidence 9999999999999999888754 467899999999999999999999999999 9999999999999987644
No 39
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.97 E-value=7.9e-31 Score=289.46 Aligned_cols=166 Identities=36% Similarity=0.608 Sum_probs=157.0
Q ss_pred Cchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccc
Q 001331 492 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 569 (1099)
Q Consensus 492 ~Rydrqi~l--~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~ 569 (1099)
.||+||+.+ +|.++|++|.++||+|||+||+||+++++|+++|+ |+++|+|+|+|+.|||+||++|++.|||+
T Consensus 9 ~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGv-----g~l~i~D~d~v~~snL~rq~~~~~~dig~ 83 (254)
T COG0476 9 ERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGV-----GKLTIVDFDTVELSNLQRQFLFTEADVGK 83 (254)
T ss_pred HhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCC-----CeEEEEcCCcccccccCceeeecccccCC
Confidence 799999999 45555999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccce
Q 001331 570 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 649 (1099)
Q Consensus 570 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~ 649 (1099)
+|++++++.+.++||.+.++++...++..+. ..+++++|+|++|+||+.+|..+|+.|+..++|++++|..|+.|+
T Consensus 84 ~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~----~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~ 159 (254)
T COG0476 84 PKAEVAAKALRKLNPLVEVVAYLERLDEENA----EELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQ 159 (254)
T ss_pred cHHHHHHHHHHHhCCCCeEEEeecccChhhH----HHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEE
Confidence 9999999999999999999999999877553 478899999999999999999999999999999999999999999
Q ss_pred eEEEeCc-ccccCCCCCC
Q 001331 650 TQMVIPH-LTENYGASRD 666 (1099)
Q Consensus 650 ~~v~ip~-~t~cy~c~~~ 666 (1099)
+.+++|. .++||.|..+
T Consensus 160 ~~~~~~~~~~~c~~~~~~ 177 (254)
T COG0476 160 VTVIIPGDKTPCYRCLFP 177 (254)
T ss_pred EEEEecCCCCCcccccCC
Confidence 9999999 5999999644
No 40
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=99.97 E-value=1.3e-31 Score=261.97 Aligned_cols=123 Identities=44% Similarity=0.839 Sum_probs=98.9
Q ss_pred ccccccccccCcccccCCCCCcccccCCcceeEEeEEEcCCCCcHHHHHHHHHHc-CCceeeeecCCceeecCC-Ccchh
Q 001331 972 YRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLRELIQWLKDK-GLNAYSISCGSCLLFNSM-FPRHK 1049 (1099)
Q Consensus 972 ~rn~f~nla~p~~~~~eP~~~~~~~~~~~~~t~Wd~~~v~~~~TL~~li~~~~~~-~l~~~~i~~g~~~LY~~~-~~~~~ 1049 (1099)
|||+|+|||+|+|.||||.+|++.++.+.+||+||||++.+++||++||++|+++ |++++||++|+++||++| .++++
T Consensus 1 yrN~F~NLAlP~~~fsEP~~~~k~k~~~~~~T~WDr~~v~~~~Tl~~li~~~~~~~~lev~ml~~g~~~LY~~f~~~~~~ 80 (125)
T PF09358_consen 1 YRNSFLNLALPFFSFSEPIPAPKTKYNDKEWTLWDRIEVNGDMTLQELIDYFKEKYGLEVTMLSQGVSLLYSSFPPPKHK 80 (125)
T ss_dssp --EEEEETTTTEEEEE---B--EEEETTEEETTT-EEEEES--BHHHHHHHHHHTTS-EEEEEEETTEEEEETT-HHHHH
T ss_pred CccEEEEcCccceeeeeccCCCceEecCccccceeEEEEcCCCCHHHHHHHHHHHhCceEEEEEeCCEEEEecCChhhhH
Confidence 8999999999999999999999999999999999999999999999999999999 999999999999999999 45889
Q ss_pred ccccCcHHHHHHHhhccCCCCceeEEEEEEEeecCCCCccccCeE
Q 001331 1050 ERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLI 1094 (1099)
Q Consensus 1050 ~~l~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~d~~~~~v~~P~v 1094 (1099)
+||+++|+||+++++++++|++++||+|+|+|+|++|+||++|+|
T Consensus 81 ~rl~~~i~elv~~v~k~~~~~~~~~l~l~v~~~d~~~edv~vP~i 125 (125)
T PF09358_consen 81 ERLKMPISELVEEVTKKPIPPGQKYLVLEVSCEDEDGEDVEVPYI 125 (125)
T ss_dssp HHTTSBHHHHHHHHTSS---TT--EEEEEEEEE-TTS-EE---EE
T ss_pred HHhCCcHHHHHHHhcCCCCCCCceEEEEEEEEeCCCCCccCCCCC
Confidence 999999999999999999999999999999999999999999997
No 41
>PRK07411 hypothetical protein; Validated
Probab=99.97 E-value=2.5e-30 Score=300.81 Aligned_cols=156 Identities=19% Similarity=0.256 Sum_probs=149.0
Q ss_pred CCCchhHhHhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcc
Q 001331 88 NQTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI 165 (1099)
Q Consensus 88 ~~~~~~~~~YsRQi~l--~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~di 165 (1099)
.+.+.+.+||+||+++ ||.++|+||++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+
T Consensus 10 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dv 89 (390)
T PRK07411 10 QLSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWV 89 (390)
T ss_pred cCCHHHHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHC
Confidence 3556777899999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEE
Q 001331 166 GKNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGS 241 (1099)
Q Consensus 166 Gk~Kaea~~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~ 241 (1099)
|++||++++++|+++||+|+|+++...+++ +++.+||+||+|.|+.+.+..||++|++.+ +|+|++++.|++|+
T Consensus 90 G~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~--~p~v~~~~~g~~g~ 167 (390)
T PRK07411 90 GKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLN--KPNVYGSIFRFEGQ 167 (390)
T ss_pred CCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEccCEEE
Confidence 999999999999999999999999988865 478899999999999999999999999999 99999999999999
Q ss_pred EEEE
Q 001331 242 VFCD 245 (1099)
Q Consensus 242 vf~d 245 (1099)
+.+.
T Consensus 168 ~~v~ 171 (390)
T PRK07411 168 ATVF 171 (390)
T ss_pred EEEE
Confidence 8865
No 42
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.97 E-value=1.7e-31 Score=288.83 Aligned_cols=176 Identities=28% Similarity=0.461 Sum_probs=162.5
Q ss_pred CCCCCCCCCccCchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCc
Q 001331 481 PLDSTEFKPINSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSR 558 (1099)
Q Consensus 481 ~~~~~~~~~~~~Rydrqi~l--~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnR 558 (1099)
.++.+++ .||+||+.+ ||..+|.+|.+++|+||||||+||..+..||.+|+ |+|-|+|.|.||.|||.|
T Consensus 38 ~Ls~dei----~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGv-----G~lGiVD~DvVe~sNlhR 108 (427)
T KOG2017|consen 38 GLSLDEI----LRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGV-----GRLGIVDYDVVELSNLHR 108 (427)
T ss_pred CCCHHHH----HhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCC-----CeecccccceeehhhHHH
Confidence 4555555 899999988 99999999999999999999999999999999999 999999999999999999
Q ss_pred ccccccCcccchHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccE
Q 001331 559 QFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPL 638 (1099)
Q Consensus 559 Qflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pl 638 (1099)
|.++++..+|+.|++.|+..++++||+++|..|...+.+.+. -+++++||+|+||+||+.+|+.|++.|+..++||
T Consensus 109 QVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa----~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpL 184 (427)
T KOG2017|consen 109 QVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNA----FDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPL 184 (427)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhH----HHHhhccceEEEcCCCccchhhhhhHHHHcCCcc
Confidence 999999999999999999999999999999999999988664 2678999999999999999999999999999999
Q ss_pred EEcCcCcccceeEEEeCcccccCCCC-CCCCC
Q 001331 639 LESGTLGAKCNTQMVIPHLTENYGAS-RDPPE 669 (1099)
Q Consensus 639 i~sgt~G~~G~~~v~ip~~t~cy~c~-~~p~~ 669 (1099)
|.+..+++-|+..++--...+||.|- +.||+
T Consensus 185 VSgSaLr~EGQLtvYny~~GPCYRClFP~Ppp 216 (427)
T KOG2017|consen 185 VSGSALRWEGQLTVYNYNNGPCYRCLFPNPPP 216 (427)
T ss_pred cccccccccceeEEeecCCCceeeecCCCCcC
Confidence 99999999999887755779999994 44443
No 43
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=3.3e-30 Score=296.57 Aligned_cols=152 Identities=23% Similarity=0.305 Sum_probs=146.8
Q ss_pred chhHhHhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccch
Q 001331 91 DIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN 168 (1099)
Q Consensus 91 ~~~~~~YsRQi~l--~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~ 168 (1099)
+++.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++
T Consensus 3 ~~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 82 (355)
T PRK05597 3 NLDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQP 82 (355)
T ss_pred hHHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCCh
Confidence 5677999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEE
Q 001331 169 RALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 244 (1099)
Q Consensus 169 Kaea~~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~ 244 (1099)
||++++++|+++||+|+|+++...++. +++.+||+||+|.|+...+..+|++|++++ +|||++++.|+.|++++
T Consensus 83 Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~--ip~v~~~~~g~~g~v~~ 160 (355)
T PRK05597 83 KAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLG--IPHVWASILGFDAQLSV 160 (355)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEecCeEEEEE
Confidence 999999999999999999999888864 578999999999999999999999999999 99999999999999986
No 44
>PRK14851 hypothetical protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=318.13 Aligned_cols=166 Identities=27% Similarity=0.403 Sum_probs=156.7
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccch
Q 001331 491 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 570 (1099)
Q Consensus 491 ~~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~ 570 (1099)
.+||+||+.+||.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|+|+||.||||||++|+.+|||++
T Consensus 23 ~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GV-----G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~ 97 (679)
T PRK14851 23 EAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGI-----GRFHIADFDQFEPVNVNRQFGARVPSFGRP 97 (679)
T ss_pred HHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCC-----CeEEEEcCCEecccccccCcCcChhhCCCH
Confidence 489999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCc--hHHHHHHHhhcccccccEEEcCcCcccc
Q 001331 571 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDN--VNARLYVDQRCLYFQKPLLESGTLGAKC 648 (1099)
Q Consensus 571 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn--~~ar~~i~~~c~~~~~Pli~sgt~G~~G 648 (1099)
|+++++++++++||.++|+++...+++++ + ++|++++|+||+|+|| .++|+++++.|+++++|+|.+|+.|+.|
T Consensus 98 Kv~v~~~~l~~inP~~~I~~~~~~i~~~n--~--~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g 173 (679)
T PRK14851 98 KLAVMKEQALSINPFLEITPFPAGINADN--M--DAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSS 173 (679)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCChHH--H--HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccc
Confidence 99999999999999999999999997643 2 5789999999999997 4789999999999999999999999999
Q ss_pred eeEEEeCcccccCCCCCC
Q 001331 649 NTQMVIPHLTENYGASRD 666 (1099)
Q Consensus 649 ~~~v~ip~~t~cy~c~~~ 666 (1099)
++.++.|+ +.||.|.-+
T Consensus 174 ~~~~~~p~-~~~~~~~~~ 190 (679)
T PRK14851 174 AMLVFTPQ-GMGFDDYFN 190 (679)
T ss_pred eEEEEcCC-CCCHhHhcc
Confidence 99999997 788877654
No 45
>PRK08328 hypothetical protein; Provisional
Probab=99.97 E-value=8.6e-30 Score=276.74 Aligned_cols=155 Identities=27% Similarity=0.448 Sum_probs=146.1
Q ss_pred chhHhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccc-hH
Q 001331 91 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGK-NR 169 (1099)
Q Consensus 91 ~~~~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk-~K 169 (1099)
+.+.+||+||+++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|+ +|
T Consensus 4 ~~~~~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k 83 (231)
T PRK08328 4 ERELERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPK 83 (231)
T ss_pred HHHHHHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHH
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999 59
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEE
Q 001331 170 ALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD 245 (1099)
Q Consensus 170 aea~~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d 245 (1099)
+++++++|+++||+|+|+.+...+++ ++++++|+||+|.++.+.+..++++|++++ +|||++++.|++|+++..
T Consensus 84 ~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~--ip~i~g~~~g~~G~v~~~ 161 (231)
T PRK08328 84 PLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKG--IPLVHGAVEGTYGQVTTI 161 (231)
T ss_pred HHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEeeccCEEEEEEE
Confidence 99999999999999999999887765 368899999999999999999999999999 999999999999999865
Q ss_pred cC
Q 001331 246 FG 247 (1099)
Q Consensus 246 ~g 247 (1099)
.+
T Consensus 162 ~p 163 (231)
T PRK08328 162 VP 163 (231)
T ss_pred CC
Confidence 43
No 46
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.97 E-value=2.4e-29 Score=278.83 Aligned_cols=265 Identities=17% Similarity=0.235 Sum_probs=196.6
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCCC-
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT- 194 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l~- 194 (1099)
+|||+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+|||+++++|+|++||++++++|+++||+++|+.+...+.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999987764
Q ss_pred --hhhccCCcEEEEecCCHHHHHHHHHHHHhcC------CCceeEEEeecceeEEEEEEcCCceEEEcCCCC-CCcceee
Q 001331 195 --KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ------PAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGE-DPHTGII 265 (1099)
Q Consensus 195 --~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~------~~ipfI~~~~~G~~G~vf~d~g~~~~v~d~~ge-~p~~~~i 265 (1099)
.+++++||+||++.|+.+.|..+|+.|.+.. ..+|||.+++.|+.|++.+..+....+.+..-+ .|..
T Consensus 81 ~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~--- 157 (291)
T cd01488 81 KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQ--- 157 (291)
T ss_pred hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCC---
Confidence 4789999999999999999999999875531 129999999999999999877542212111111 0100
Q ss_pred cccccCCCceeeeccccccccccCCeeEEEEeecccccCCCCCccccccCCceeeeccccccccceeecceEEEeeCCee
Q 001331 266 ASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKV 345 (1099)
Q Consensus 266 ~~I~~~~~~lv~~~~~~~~~~~dgd~v~f~ev~gm~eln~~~~~~i~~~~~~~f~i~~Dt~~f~~y~~gg~~~qvk~p~~ 345 (1099)
+...++....+.-.. +..-. | .. .
T Consensus 158 -----------------------------------------~~~p~Cti~~~P~~~-~hci~---~-----a~------~ 181 (291)
T cd01488 158 -----------------------------------------VTFPLCTIANTPRLP-EHCIE---Y-----AS------L 181 (291)
T ss_pred -----------------------------------------CCCCcccccCCCCCc-chhee---e-----ee------e
Confidence 000000000000000 00000 0 00 0
Q ss_pred ecccchHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCH
Q 001331 346 LNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDINT 425 (1099)
Q Consensus 346 i~f~sL~e~l~~p~~~l~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~l~~~a~~i~~~~~~~~~~~i~~ 425 (1099)
+.|.. ..| +.--...+.++.+.+.+.|.+..++++ ++.++-
T Consensus 182 ~~~~~-----~~~-------------------------------~~~~~~d~~~~~~~i~~~a~~ra~~f~---i~~~~~ 222 (291)
T cd01488 182 IQWPK-----EFP-------------------------------FVPLDGDDPEHIEWLYQKALERAAQFN---ISGVTY 222 (291)
T ss_pred eeccc-----ccC-------------------------------CCcCCCCCHHHHHHHHHHHHHHHHHcC---CCcccH
Confidence 00100 001 011112245667777788888777776 345677
Q ss_pred HHHHHHHhhcccccCchhhhhhhhhhHHHHHhhcCCccccceeeeeccCCCCC
Q 001331 426 KLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLP 478 (1099)
Q Consensus 426 ~~i~~~a~~~~~el~pvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~~e~l~ 478 (1099)
.+++.++...-+.++.+.|++||..+-|++|.+|+...+++||+.|.|-+++-
T Consensus 223 ~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~~ 275 (291)
T cd01488 223 SLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGCY 275 (291)
T ss_pred HHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCceE
Confidence 88999999989999999999999999999999999999999999999988764
No 47
>PRK14852 hypothetical protein; Provisional
Probab=99.96 E-value=3.6e-30 Score=317.38 Aligned_cols=167 Identities=25% Similarity=0.414 Sum_probs=156.6
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccc
Q 001331 490 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 569 (1099)
Q Consensus 490 ~~~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~ 569 (1099)
...||+||+.+||.++|++|++++|+||||||+||+++++||++|| |+|+|+|+|+||.|||||||+|+.+|||+
T Consensus 311 ~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGV-----G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~ 385 (989)
T PRK14852 311 TDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGI-----GNFNLADFDAYSPVNLNRQYGASIASFGR 385 (989)
T ss_pred HHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEecccccccccCCChhhCCC
Confidence 3579999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCch--HHHHHHHhhcccccccEEEcCcCccc
Q 001331 570 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNV--NARLYVDQRCLYFQKPLLESGTLGAK 647 (1099)
Q Consensus 570 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~--~ar~~i~~~c~~~~~Pli~sgt~G~~ 647 (1099)
+|+++++++++++||.++|+++...+++++. ++|++++|+||+|+|++ ++|++++..|+++++|+|.+|+.|++
T Consensus 386 ~Kaevaa~~l~~INP~v~I~~~~~~I~~en~----~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~ 461 (989)
T PRK14852 386 GKLDVMTERALSVNPFLDIRSFPEGVAAETI----DAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYS 461 (989)
T ss_pred hHHHHHHHHHHHHCCCCeEEEEecCCCHHHH----HHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccC
Confidence 9999999999999999999999999877543 67899999999999985 67889999999999999999999999
Q ss_pred ceeEEEeCcccccCCCCCC
Q 001331 648 CNTQMVIPHLTENYGASRD 666 (1099)
Q Consensus 648 G~~~v~ip~~t~cy~c~~~ 666 (1099)
|++.++.|+ ..||.|.-+
T Consensus 462 g~v~v~~p~-~~~~~~~f~ 479 (989)
T PRK14852 462 CALLVFMPG-GMNFDSYFG 479 (989)
T ss_pred eeEEEEcCC-CCCHHHhCC
Confidence 999999987 488888644
No 48
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=99.96 E-value=8.4e-30 Score=277.90 Aligned_cols=148 Identities=23% Similarity=0.358 Sum_probs=141.5
Q ss_pred hHhhhhhhcc--CHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHH
Q 001331 95 DLHSRQLAVY--GRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALA 172 (1099)
Q Consensus 95 ~~YsRQi~l~--G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea 172 (1099)
+||+||+++| |.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++++|+|++||++
T Consensus 3 ~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~ 82 (240)
T TIGR02355 3 LRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVES 82 (240)
T ss_pred cceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHH
Confidence 6999999996 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEE
Q 001331 173 SVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 244 (1099)
Q Consensus 173 ~~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~ 244 (1099)
++++|+++||+++|+.+...+++ +++.++|+||+|.|+.+.+..+|++|++++ +|||++++.|+.|++.+
T Consensus 83 a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~--ip~v~~~~~g~~G~v~~ 156 (240)
T TIGR02355 83 AKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAK--VPLVSGAAIRMEGQVSV 156 (240)
T ss_pred HHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEecccEeEEEE
Confidence 99999999999999999988865 468899999999999999999999999999 99999999999998753
No 49
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.96 E-value=1.7e-29 Score=291.21 Aligned_cols=155 Identities=25% Similarity=0.380 Sum_probs=147.8
Q ss_pred CCchhHhHhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccc
Q 001331 89 QTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 166 (1099)
Q Consensus 89 ~~~~~~~~YsRQi~l--~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diG 166 (1099)
+...+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+|||+++++|+|
T Consensus 14 ~~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG 93 (370)
T PRK05600 14 LPTSELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVG 93 (370)
T ss_pred CCHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCC
Confidence 345667899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEE
Q 001331 167 KNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 242 (1099)
Q Consensus 167 k~Kaea~~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~v 242 (1099)
++||++++++|+++||+|+|+++...+++ ++++++|+||+|.|+.+.+..+|++|++++ +|||++++.|+.|++
T Consensus 94 ~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~--iP~v~~~~~g~~G~v 171 (370)
T PRK05600 94 RPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITG--TPLVWGTVLRFHGEL 171 (370)
T ss_pred CHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEecCEEEE
Confidence 99999999999999999999999988875 478899999999999999999999999999 999999999999999
Q ss_pred EEE
Q 001331 243 FCD 245 (1099)
Q Consensus 243 f~d 245 (1099)
.+.
T Consensus 172 ~v~ 174 (370)
T PRK05600 172 AVF 174 (370)
T ss_pred EEE
Confidence 763
No 50
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.96 E-value=4.5e-29 Score=274.03 Aligned_cols=164 Identities=25% Similarity=0.421 Sum_probs=147.0
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccch
Q 001331 491 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 570 (1099)
Q Consensus 491 ~~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~ 570 (1099)
..||+||.++||.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|+|.|+.||||||+++..+|||++
T Consensus 10 ~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GV-----g~itLiD~D~V~~sNlnRQ~~~~~~~vG~~ 84 (268)
T PRK15116 10 RQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGI-----GAITLIDMDDVCVTNTNRQIHALRDNVGLA 84 (268)
T ss_pred HHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCEecccccccccccChhhcChH
Confidence 369999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhh-cCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccce
Q 001331 571 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFW-ENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 649 (1099)
Q Consensus 571 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~-~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~ 649 (1099)
|++++++++.++||+++|+++...+.+++. ++++ .++|+||+|+|++.++..++++|+.+++|+|.+|..|.+..
T Consensus 85 Kve~~~~rl~~INP~~~V~~i~~~i~~e~~----~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~d 160 (268)
T PRK15116 85 KAEVMAERIRQINPECRVTVVDDFITPDNV----AEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID 160 (268)
T ss_pred HHHHHHHHHHhHCCCcEEEEEecccChhhH----HHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCC
Confidence 999999999999999999999887765432 2334 57999999999999999999999999999999988887666
Q ss_pred -eEEEeCcccccCCC
Q 001331 650 -TQMVIPHLTENYGA 663 (1099)
Q Consensus 650 -~~v~ip~~t~cy~c 663 (1099)
.++-+-++...+.|
T Consensus 161 p~~~~~~di~~t~~~ 175 (268)
T PRK15116 161 PTQIQVVDLAKTIQD 175 (268)
T ss_pred CCeEEEEeeecccCC
Confidence 44556666655543
No 51
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.95 E-value=2.8e-27 Score=256.07 Aligned_cols=227 Identities=18% Similarity=0.235 Sum_probs=184.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCCC-
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT- 194 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l~- 194 (1099)
+|+|+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+||||++++|+|++||++++++|+++||+++|+.+...++
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999987762
Q ss_pred -----hhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEcCCceEEEcCCCCCCcceeecccc
Q 001331 195 -----KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASIS 269 (1099)
Q Consensus 195 -----~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~~~v~d~~ge~p~~~~i~~I~ 269 (1099)
++++++||+||.|.|+.+.|..+|++|++++ +|||.+++.|+.|++++..+....+.+....++
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~--iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~--------- 149 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLI--VPLIESGTEGFKGNAQVILPGMTECIECTLYPP--------- 149 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcccCCceEEEEEcCCCCCCcccCCCCC---------
Confidence 4689999999999999999999999999999 999999999999999876643111111000000
Q ss_pred cCCCceeeeccccccccccCCeeEEEEeecccccCCCCCccccccCCceeeeccccccccceeecceEEEeeCCeeeccc
Q 001331 270 NDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFK 349 (1099)
Q Consensus 270 ~~~~~lv~~~~~~~~~~~dgd~v~f~ev~gm~eln~~~~~~i~~~~~~~f~i~~Dt~~f~~y~~gg~~~qvk~p~~i~f~ 349 (1099)
. +...-.
T Consensus 150 ------------------------------------~-------------------------------------~~~p~C 156 (234)
T cd01484 150 ------------------------------------Q-------------------------------------KNFPMC 156 (234)
T ss_pred ------------------------------------C-------------------------------------CCCCcc
Confidence 0 000001
Q ss_pred chHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHH
Q 001331 350 PLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDINTKLLR 429 (1099)
Q Consensus 350 sL~e~l~~p~~~l~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~l~~~a~~i~~~~~~~~~~~i~~~~i~ 429 (1099)
+++. .| + ...|....|.+.|+ .+..+.+.+.+.++...+.++ ++.++...++
T Consensus 157 ti~~---~P------------~-~~~hci~~a~~~~~---------d~~~~~~~i~~~a~~ra~~~~---i~~~~~~~~~ 208 (234)
T cd01484 157 TIAS---MP------------R-LPEHCIEWARMLQW---------DDPEHIQFIFQASNERASQYN---IRGVTYFLTK 208 (234)
T ss_pred ccCC---CC------------C-CchHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHcC---CCCcCHHHHH
Confidence 1111 11 1 23577777777776 356788888898988888876 4567888999
Q ss_pred HHHhhcccccCchhhhhhhhhhHHH
Q 001331 430 HFAFGARAVLNPMAAMFGGIVGQEV 454 (1099)
Q Consensus 430 ~~a~~~~~el~pvaA~iGGiaAQEV 454 (1099)
.++...-+.++.+.|++.|++.-|+
T Consensus 209 ~i~~~iipai~tTnaiia~~~~~e~ 233 (234)
T cd01484 209 GVAGRIIPAVATTNAVVAGVCALEV 233 (234)
T ss_pred HHhcCeecchhhHHHHHHHHHHHhh
Confidence 9999999999999999999999886
No 52
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.95 E-value=7.1e-28 Score=275.05 Aligned_cols=150 Identities=23% Similarity=0.371 Sum_probs=142.6
Q ss_pred hHhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccc--chHH
Q 001331 95 DLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG--KNRA 170 (1099)
Q Consensus 95 ~~YsRQi~l--~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diG--k~Ka 170 (1099)
+||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+++||+||++++++|+| ++||
T Consensus 3 ~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka 82 (339)
T PRK07688 3 ERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKA 82 (339)
T ss_pred chhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHH
Confidence 699999988 999999999999999999999999999999999999999999999999999999999999995 5999
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEc
Q 001331 171 LASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 246 (1099)
Q Consensus 171 ea~~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~ 246 (1099)
++++++|+++||+|+|+.+...+++ ++++++|+||+|.++.+.+..+|++|++++ +|||++++.|++|+++...
T Consensus 83 ~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~--iP~i~~~~~g~~G~~~~~~ 160 (339)
T PRK07688 83 VAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYG--IPWIYGACVGSYGLSYTII 160 (339)
T ss_pred HHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhC--CCEEEEeeeeeeeEEEEEC
Confidence 9999999999999999999888765 468899999999999999999999999999 9999999999999977643
No 53
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=99.95 E-value=6.8e-28 Score=275.07 Aligned_cols=151 Identities=23% Similarity=0.417 Sum_probs=142.8
Q ss_pred HhHhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccc--chH
Q 001331 94 EDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG--KNR 169 (1099)
Q Consensus 94 ~~~YsRQi~l--~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diG--k~K 169 (1099)
++||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+++||+||++++++|+| ++|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K 81 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK 81 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence 3699999998 899999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEE
Q 001331 170 ALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD 245 (1099)
Q Consensus 170 aea~~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d 245 (1099)
|++++++|+++||+|+|+++..+++. ++++++|+||+|.++.+.+..+|++|++++ +|||++++.|++|+++..
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~--ip~i~~~~~g~~G~~~~~ 159 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYN--IPWIYGGCVGSYGVTYTI 159 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEecccEEEEEEE
Confidence 99999999999999999999887763 467899999999999999999999999999 999999999999998764
Q ss_pred c
Q 001331 246 F 246 (1099)
Q Consensus 246 ~ 246 (1099)
.
T Consensus 160 ~ 160 (338)
T PRK12475 160 I 160 (338)
T ss_pred C
Confidence 4
No 54
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.95 E-value=3.1e-28 Score=263.17 Aligned_cols=155 Identities=29% Similarity=0.439 Sum_probs=140.3
Q ss_pred cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHH
Q 001331 501 FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT 580 (1099)
Q Consensus 501 ~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~ 580 (1099)
||.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|+|.|+.+|||||++++.+|||++|+++++++++
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GV-----g~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~ 75 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGV-----GKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIR 75 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHH
Confidence 69999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccce-eEEEeCcccc
Q 001331 581 SINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTE 659 (1099)
Q Consensus 581 ~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~-~~v~ip~~t~ 659 (1099)
++||+++|+++...+.+++.. +-+..++|+||+|+|+..+|..++++|+.+++|+|.++..|.+.. .++-+.++..
T Consensus 76 ~inP~~~V~~~~~~i~~~~~~---~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~ 152 (231)
T cd00755 76 DINPECEVDAVEEFLTPDNSE---DLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISK 152 (231)
T ss_pred HHCCCcEEEEeeeecCHhHHH---HHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEec
Confidence 999999999999988865421 223357999999999999999999999999999999998888766 6677777666
Q ss_pred cCCC
Q 001331 660 NYGA 663 (1099)
Q Consensus 660 cy~c 663 (1099)
++.|
T Consensus 153 t~~~ 156 (231)
T cd00755 153 TSGD 156 (231)
T ss_pred cccC
Confidence 6654
No 55
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.95 E-value=5.6e-28 Score=258.97 Aligned_cols=154 Identities=29% Similarity=0.387 Sum_probs=138.9
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchH
Q 001331 492 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 571 (1099)
Q Consensus 492 ~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~K 571 (1099)
.-|.++...||.++|++|++++|+||||||+||+++++|+++|+ |+|+|+|.|.|+.+||+||+++ ++|+|++|
T Consensus 9 ~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~K 82 (212)
T PRK08644 9 EFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGV-----GNLKLVDFDVVEPSNLNRQQYF-ISQIGMPK 82 (212)
T ss_pred HHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEeccccccccEee-hhhCCChH
Confidence 44667778899999999999999999999999999999999999 9999999999999999999977 67999999
Q ss_pred HHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccc-cccEEEcCcCccccee
Q 001331 572 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF-QKPLLESGTLGAKCNT 650 (1099)
Q Consensus 572 a~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~-~~Pli~sgt~G~~G~~ 650 (1099)
+++++++++++||+++|+++...+.+++. +++++++|+||+|+||+.+|.++++.|.++ ++|+|.++..|..|++
T Consensus 83 a~~a~~~l~~lnp~v~v~~~~~~i~~~~~----~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~ 158 (212)
T PRK08644 83 VEALKENLLEINPFVEIEAHNEKIDEDNI----EELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDS 158 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCHHHH----HHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCc
Confidence 99999999999999999999988876432 467899999999999999999999999998 9999987666666776
Q ss_pred EEEeC
Q 001331 651 QMVIP 655 (1099)
Q Consensus 651 ~v~ip 655 (1099)
..+.|
T Consensus 159 ~~~~~ 163 (212)
T PRK08644 159 NSIKT 163 (212)
T ss_pred eEEEe
Confidence 55555
No 56
>PRK07877 hypothetical protein; Provisional
Probab=99.95 E-value=4.2e-28 Score=297.02 Aligned_cols=182 Identities=21% Similarity=0.335 Sum_probs=155.1
Q ss_pred eeeeeccCCCCCCCCCCCCCCCCccCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEe
Q 001331 467 QFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTIT 546 (1099)
Q Consensus 467 q~~~fD~~e~l~~~~~~~~~~~~~~~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~iv 546 (1099)
.|.||==-..+-- -++++++. ..||+||+.+||.++|++|++++|+||||| +||.++.+||++||+ |+|+|+
T Consensus 66 ~w~~~pw~~~~v~-~~~~~~~~--~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvv----G~l~lv 137 (722)
T PRK07877 66 RWVYYPWRRTVVH-LLGPREFR--AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLC----GELRLA 137 (722)
T ss_pred cEEEecchhheee-cCCHHHhh--HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCC----CeEEEE
Confidence 6788743222211 12333332 389999999999999999999999999997 999999999999932 999999
Q ss_pred cCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHH
Q 001331 547 DDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLY 626 (1099)
Q Consensus 547 D~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~ 626 (1099)
|+|.||.|||||| +|+..|||++|+++++++++++||+++|+++..++++++. ++|++++|+||+|+||+++|.+
T Consensus 138 D~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~----~~~l~~~DlVvD~~D~~~~R~~ 212 (722)
T PRK07877 138 DFDTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNV----DAFLDGLDVVVEECDSLDVKVL 212 (722)
T ss_pred cCCEEcccccccc-cCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHhcCCCEEEECCCCHHHHHH
Confidence 9999999999999 5899999999999999999999999999999999987543 6788999999999999999999
Q ss_pred HHhhcccccccEEEcCcCcccceeE--E--EeCcccccCCCC
Q 001331 627 VDQRCLYFQKPLLESGTLGAKCNTQ--M--VIPHLTENYGAS 664 (1099)
Q Consensus 627 i~~~c~~~~~Pli~sgt~G~~G~~~--v--~ip~~t~cy~c~ 664 (1099)
+++.|+++++|+|.++..+ |++. . +.| .++||.|.
T Consensus 213 ln~~a~~~~iP~i~~~~~~--g~~~~e~~~~~p-~~pc~~cl 251 (722)
T PRK07877 213 LREAARARRIPVLMATSDR--GLLDVERFDLEP-DRPILHGL 251 (722)
T ss_pred HHHHHHHcCCCEEEEcCCC--CCcCcceeeeCC-CCceeecc
Confidence 9999999999999888555 6642 2 355 69999995
No 57
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.95 E-value=1.7e-27 Score=301.25 Aligned_cols=160 Identities=20% Similarity=0.302 Sum_probs=149.1
Q ss_pred hHhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCC-----CeEEEEeCCccCcccCCcccccCCCcccc
Q 001331 93 DEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGV-----KSVTLHDEGTVELWDLSSNFVFSDNDIGK 167 (1099)
Q Consensus 93 ~~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGV-----g~itlvD~d~V~~~dL~~qf~~~~~diGk 167 (1099)
..+|||||+++||.++|++|++++|+|+|+||+|+|++|||+++|| |+|+|+|.|.|+.+||+|||+++++|||+
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk 477 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGK 477 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCc
Confidence 4589999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEecCCC--------hhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeeccee
Q 001331 168 NRALASVQKLQELNNAVVLSTLTSKLT--------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLF 239 (1099)
Q Consensus 168 ~Kaea~~~~L~eLNp~V~v~~~~~~l~--------~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~ 239 (1099)
+||++++++|+++||.|+|+++...+. ++++.++|+||.|.|+.+.|..+++.|+.++ +|||.+++.|+.
T Consensus 478 ~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~--iPli~~gt~G~~ 555 (1008)
T TIGR01408 478 PKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFL--KPLLESGTLGTK 555 (1008)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEeccCce
Confidence 999999999999999999999987663 3578899999999999999999999999999 999999999999
Q ss_pred EEEEEEcCCceEEEc
Q 001331 240 GSVFCDFGPEFTVVD 254 (1099)
Q Consensus 240 G~vf~d~g~~~~v~d 254 (1099)
|++.+..+....+++
T Consensus 556 G~v~v~ip~~te~y~ 570 (1008)
T TIGR01408 556 GNTQVVVPHLTESYG 570 (1008)
T ss_pred eeEEEEeCCCcCCCC
Confidence 999998764333333
No 58
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.95 E-value=1.3e-27 Score=238.81 Aligned_cols=135 Identities=34% Similarity=0.653 Sum_probs=122.8
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEE
Q 001331 510 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 589 (1099)
Q Consensus 510 ~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~ 589 (1099)
+++||+|+|+||+||+++++|+++|+ |+|+|+|+|.|+.+||+||+||+.+|+|++|+++++++++++||.++|+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv-----~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~ 75 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGV-----GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVE 75 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTT-----SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCC-----CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeee
Confidence 47899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred EEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccceeEEE
Q 001331 590 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMV 653 (1099)
Q Consensus 590 ~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~~~v~ 653 (1099)
++...+.++.. .++++++|+||+|+|+.++|.+++++|+++++|+|++|+.|++|+++.+
T Consensus 76 ~~~~~~~~~~~----~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~~ 135 (135)
T PF00899_consen 76 AIPEKIDEENI----EELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVMV 135 (135)
T ss_dssp EEESHCSHHHH----HHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEEE
T ss_pred eeecccccccc----cccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEC
Confidence 99999854321 4677999999999999999999999999999999999999999998653
No 59
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.95 E-value=4.4e-27 Score=258.35 Aligned_cols=143 Identities=17% Similarity=0.308 Sum_probs=133.3
Q ss_pred CchhHhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchH
Q 001331 90 TDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNR 169 (1099)
Q Consensus 90 ~~~~~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~K 169 (1099)
.+....||+||.+|||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+|++||+++..+|+|++|
T Consensus 6 ~~~~~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~K 85 (268)
T PRK15116 6 SDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAK 85 (268)
T ss_pred CHHHHHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCCChh----hc-cCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEe
Q 001331 170 ALASVQKLQELNNAVVLSTLTSKLTKE----QL-SDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAE 234 (1099)
Q Consensus 170 aea~~~~L~eLNp~V~v~~~~~~l~~~----~l-~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~ 234 (1099)
|++++++++++||+++|+.+...++++ ++ .+||+||+|.++...+..|+++|++++ +|||.++
T Consensus 86 ve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~--ip~I~~g 153 (268)
T PRK15116 86 AEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNK--IPLVTTG 153 (268)
T ss_pred HHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEC
Confidence 999999999999999999998776542 44 479999999999999999999999999 9999764
No 60
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.94 E-value=4.9e-27 Score=259.33 Aligned_cols=158 Identities=30% Similarity=0.430 Sum_probs=149.0
Q ss_pred CCchhHhHhhhhhhccCH--HHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccc
Q 001331 89 QTDIDEDLHSRQLAVYGR--ETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 166 (1099)
Q Consensus 89 ~~~~~~~~YsRQi~l~G~--e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diG 166 (1099)
...++..||+||+++|+. ++|++|+.++|+|+|+||+|++++++|+++|||+++|+|+|.|+.+||+||++++++|+|
T Consensus 3 ~~~~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig 82 (254)
T COG0476 3 LSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVG 82 (254)
T ss_pred ccHHHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccC
Confidence 357788999999999654 459999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEE
Q 001331 167 KNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 242 (1099)
Q Consensus 167 k~Kaea~~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~v 242 (1099)
++||+++++.|+++||.+++..+...++. +++.++|+|++|+++++.+..+|++|++++ +|++++++.|+.|++
T Consensus 83 ~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~--~pli~~~~~~~~g~~ 160 (254)
T COG0476 83 KPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLG--IPLVHGGAIGFEGQV 160 (254)
T ss_pred CcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhC--CCeEeeeeccceEEE
Confidence 99999999999999999999999987754 468899999999999999999999999999 999999999999999
Q ss_pred EEEcCC
Q 001331 243 FCDFGP 248 (1099)
Q Consensus 243 f~d~g~ 248 (1099)
++..+.
T Consensus 161 ~~~~~~ 166 (254)
T COG0476 161 TVIIPG 166 (254)
T ss_pred EEEecC
Confidence 998865
No 61
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.94 E-value=3.1e-27 Score=249.83 Aligned_cols=122 Identities=30% Similarity=0.475 Sum_probs=113.4
Q ss_pred chhHhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHH
Q 001331 91 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 170 (1099)
Q Consensus 91 ~~~~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Ka 170 (1099)
+.+.+||||||++||.++|+||++++|||+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||+++ |+|++||
T Consensus 3 ~~E~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KA 81 (287)
T PTZ00245 3 DAEAVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRG 81 (287)
T ss_pred HHHHHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHH
Confidence 455689999999999999999999999999999999999999999999999999999999999999999998 6899999
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCChhhccCCcEEEEecCCHHHHH
Q 001331 171 LASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAI 215 (1099)
Q Consensus 171 ea~~~~L~eLNp~V~v~~~~~~l~~~~l~~~dvVV~~~~~~~~~~ 215 (1099)
++++++|+++||+|+|+.+...+++ ..+|++||+++.+.+...
T Consensus 82 eaAa~~L~eLNP~V~V~~i~~rld~--~n~fqvvV~~~~~le~av 124 (287)
T PTZ00245 82 ARALGALQRLNPHVSVYDAVTKLDG--SSGTRVTMAAVITEEDAV 124 (287)
T ss_pred HHHHHHHHHHCCCcEEEEcccccCC--cCCceEEEEEcccHHHHH
Confidence 9999999999999999999888876 448999999998766543
No 62
>PRK14852 hypothetical protein; Provisional
Probab=99.94 E-value=5.4e-27 Score=289.51 Aligned_cols=167 Identities=17% Similarity=0.148 Sum_probs=149.6
Q ss_pred cccccCCCCCC---CchhHhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCC
Q 001331 79 VPIMTLGNSNQ---TDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLS 155 (1099)
Q Consensus 79 ~~~~~~~~~~~---~~~~~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~ 155 (1099)
++.|.++.-.. ....+.+|+||+++||.++|+||++++|+|+||||+|++++++|+++|||+|+|+|.|.|+.+||+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLN 373 (989)
T PRK14852 294 PGGVPLDMLKLETRDAYTDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLN 373 (989)
T ss_pred CCCCchHHHhHHHHHHHHHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccc
Confidence 34455554322 244567999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCC--HHHHHHHHHHHHhcCCCce
Q 001331 156 SNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDIS--LDKAIEFDDFCHNHQPAIS 229 (1099)
Q Consensus 156 ~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~--~~~~~~ln~~c~~~~~~ip 229 (1099)
|||+++.+|||++||++++++|+++||+|+|+++.+.+++ ++++++|+||+|.|+ .+.+..+++.|++++ ||
T Consensus 374 RQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~--IP 451 (989)
T PRK14852 374 RQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELG--IP 451 (989)
T ss_pred cccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcC--CC
Confidence 9999999999999999999999999999999999888754 478899999999986 456778889999999 99
Q ss_pred eEEEeecceeEEEEEEcC
Q 001331 230 FIKAEVRGLFGSVFCDFG 247 (1099)
Q Consensus 230 fI~~~~~G~~G~vf~d~g 247 (1099)
||.+++.|+.|++++..+
T Consensus 452 ~I~ag~~G~~g~v~v~~p 469 (989)
T PRK14852 452 VITAGPLGYSCALLVFMP 469 (989)
T ss_pred EEEeeccccCeeEEEEcC
Confidence 999999999999997553
No 63
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.94 E-value=4.5e-27 Score=278.81 Aligned_cols=156 Identities=22% Similarity=0.259 Sum_probs=133.4
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcc---
Q 001331 491 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI--- 567 (1099)
Q Consensus 491 ~~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~di--- 567 (1099)
|-++-|.+.+ -.-..++|+++||+||||||+||.++++|+++|| |+|++||+|+|+.|||+||+||+.+|+
T Consensus 319 nlkLmkWRll-P~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GV-----g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~ 392 (664)
T TIGR01381 319 NLKLMKWRLH-PDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGV-----RHITFVDNGKVSYSNPVRQSLSNFEDCLLG 392 (664)
T ss_pred HHHHHhhhcC-ChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEECCCccccccccchhhhhhc
Confidence 3344444333 2233489999999999999999999999999999 999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhhCCCCeEEEEeccc-------Cccc-ccccc-----hhhhcCCCEEEEccCchHHHHHHHhhcccc
Q 001331 568 GQAKSTVAASAATSINPRLNIEALQNRV-------GPET-ENVFD-----DTFWENITCVINALDNVNARLYVDQRCLYF 634 (1099)
Q Consensus 568 G~~Ka~vaa~~l~~~np~~~i~~~~~~v-------~~~~-e~~~~-----~~~~~~~DvVi~alDn~~ar~~i~~~c~~~ 634 (1099)
|++||++|+++++++||+++|+++..++ ++.. +.+.. .++++++|+|++|+||+++|.+++.+|..+
T Consensus 393 Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~ 472 (664)
T TIGR01381 393 GRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRH 472 (664)
T ss_pred CCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998885 3321 11110 467899999999999999999999999999
Q ss_pred cccEEEcCcCcccceeEEE
Q 001331 635 QKPLLESGTLGAKCNTQMV 653 (1099)
Q Consensus 635 ~~Pli~sgt~G~~G~~~v~ 653 (1099)
++|+|.++ .|+.|++.+.
T Consensus 473 ~kplI~aA-lGfdg~lvmr 490 (664)
T TIGR01381 473 KKIAISAA-LGFDSYVVMR 490 (664)
T ss_pred CCCEEEEE-eccceEEEEE
Confidence 99999875 8998887664
No 64
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.94 E-value=4.5e-27 Score=246.47 Aligned_cols=161 Identities=25% Similarity=0.404 Sum_probs=145.7
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccch
Q 001331 491 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 570 (1099)
Q Consensus 491 ~~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~ 570 (1099)
..||.|..+++|.++.++|++++|+|||+||+||.++..|||+|+ |+|+|||+|.|.++|+|||.-....+||++
T Consensus 10 ~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGi-----g~itlID~D~v~vTN~NRQi~A~~~~iGk~ 84 (263)
T COG1179 10 RQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGI-----GRITLIDMDDVCVTNTNRQIHALLGDIGKP 84 (263)
T ss_pred HHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCC-----CeEEEEecccccccccchhhHhhhhhcccH
Confidence 479999999999999999999999999999999999999999999 999999999999999999999888999999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccce-
Q 001331 571 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN- 649 (1099)
Q Consensus 571 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~- 649 (1099)
|+++++++++.+||.++|.++...+++++.+ +-+..++|+||||+|++.++..+-.+|+.+++|+|.+|..|.+-.
T Consensus 85 Kv~vm~eri~~InP~c~V~~~~~f~t~en~~---~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DP 161 (263)
T COG1179 85 KVEVMKERIKQINPECEVTAINDFITEENLE---DLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDP 161 (263)
T ss_pred HHHHHHHHHHhhCCCceEeehHhhhCHhHHH---HHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCC
Confidence 9999999999999999999999999987642 234568999999999999999999999999999998887776544
Q ss_pred eEEEeCcccc
Q 001331 650 TQMVIPHLTE 659 (1099)
Q Consensus 650 ~~v~ip~~t~ 659 (1099)
+++-+-++..
T Consensus 162 Tri~v~Disk 171 (263)
T COG1179 162 TRIQVADISK 171 (263)
T ss_pred ceEEeeechh
Confidence 5555544433
No 65
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.94 E-value=8.7e-26 Score=261.83 Aligned_cols=131 Identities=20% Similarity=0.361 Sum_probs=124.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhCC-----CeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 116 NILVSGMQGLGAEIAKNLILAGV-----KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGV-----g~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
+|+|||+||+|+|++|||+++|| |+|+|+|.|.|+.+||+|||+++++|||++||++++++|+++||+|+|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred cCCC--------hhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEcCC
Q 001331 191 SKLT--------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGP 248 (1099)
Q Consensus 191 ~~l~--------~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~ 248 (1099)
..+. ++++.++|+||.|.|+.+.|..+++.|+.++ +|||.+++.|+.|++.+-.+.
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~--iPli~~gt~G~~G~v~v~iP~ 144 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYR--KPLLESGTLGTKGNTQVVIPH 144 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhC--CCEEEEecccceeEEEEEeCC
Confidence 7664 3678999999999999999999999999999 999999999999999987753
No 66
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.94 E-value=2.3e-26 Score=267.57 Aligned_cols=154 Identities=25% Similarity=0.369 Sum_probs=145.7
Q ss_pred CchhHhHhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccc
Q 001331 90 TDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGK 167 (1099)
Q Consensus 90 ~~~~~~~YsRQi~l--~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk 167 (1099)
...+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+|||+++++|||+
T Consensus 109 s~~~~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~ 188 (376)
T PRK08762 109 TDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQ 188 (376)
T ss_pred CHHHHHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCC
Confidence 34456899999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEE
Q 001331 168 NRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 243 (1099)
Q Consensus 168 ~Kaea~~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf 243 (1099)
+||++++++|+++||+|+|..+...+++ +++.++|+||.|+++...+..+|++|++++ +|||++++.|+.|++.
T Consensus 189 ~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~--ip~i~~~~~g~~g~v~ 266 (376)
T PRK08762 189 PKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLG--KPLVYGAVFRFEGQVS 266 (376)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEEE
Confidence 9999999999999999999999887764 467899999999999999999999999999 9999999999999988
Q ss_pred EE
Q 001331 244 CD 245 (1099)
Q Consensus 244 ~d 245 (1099)
..
T Consensus 267 ~~ 268 (376)
T PRK08762 267 VF 268 (376)
T ss_pred EE
Confidence 64
No 67
>PRK14851 hypothetical protein; Provisional
Probab=99.94 E-value=2.2e-26 Score=281.68 Aligned_cols=156 Identities=13% Similarity=0.196 Sum_probs=147.2
Q ss_pred CCchhHhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccch
Q 001331 89 QTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN 168 (1099)
Q Consensus 89 ~~~~~~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~ 168 (1099)
..+...++|+||+++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+++||+|||+++.+|||++
T Consensus 18 ~~~~~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~ 97 (679)
T PRK14851 18 AAEYREAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRP 97 (679)
T ss_pred HHHHHHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCC--HHHHHHHHHHHHhcCCCceeEEEeecceeEEE
Q 001331 169 RALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDIS--LDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 242 (1099)
Q Consensus 169 Kaea~~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~--~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~v 242 (1099)
|+++++++|+++||+++|+++...+++ ++++++|+||+|.|+ .+.+..|++.|++++ ||+|.+++.|+.|++
T Consensus 98 Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~--iP~i~~g~~G~~g~~ 175 (679)
T PRK14851 98 KLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKG--IPVITAGPLGYSSAM 175 (679)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCC--CCEEEeecccccceE
Confidence 999999999999999999999998865 478899999999995 567889999999999 999999999999999
Q ss_pred EEEc
Q 001331 243 FCDF 246 (1099)
Q Consensus 243 f~d~ 246 (1099)
++..
T Consensus 176 ~~~~ 179 (679)
T PRK14851 176 LVFT 179 (679)
T ss_pred EEEc
Confidence 8754
No 68
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-25 Score=240.18 Aligned_cols=275 Identities=17% Similarity=0.279 Sum_probs=203.0
Q ss_pred cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCC
Q 001331 104 YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA 183 (1099)
Q Consensus 104 ~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~ 183 (1099)
-+.|..+-|.+++|||||+||+|+|++|||+++|.+.+.++|.|.++.+||+|||+|++.|+|++||+++++.++...|.
T Consensus 30 ~~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~ 109 (422)
T KOG2015|consen 30 PSEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPG 109 (422)
T ss_pred CCHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCC
Confidence 36788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCC---ChhhccCCcEEEEecCCHHHHHHHHHHHHhcCC--------CceeEEEeecceeEEEEEEcCCceEE
Q 001331 184 VVLSTLTSKL---TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQP--------AISFIKAEVRGLFGSVFCDFGPEFTV 252 (1099)
Q Consensus 184 V~v~~~~~~l---~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~--------~ipfI~~~~~G~~G~vf~d~g~~~~v 252 (1099)
..|..+...+ ..+|+++|++||+..|+.+.|.+||....+... -||+|++++.|+.|.+.+.++.--.+
T Consensus 110 ~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~TaC 189 (422)
T KOG2015|consen 110 CVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITAC 189 (422)
T ss_pred cEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccHH
Confidence 9999987765 568999999999999999999999986655321 17999999999999999988642122
Q ss_pred EcCCCC--CCcceeecccccCCCceeeeccccccccccCCeeEEEEeecccccCCCCCccccccCCceeeeccccccccc
Q 001331 253 VDVDGE--DPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGT 330 (1099)
Q Consensus 253 ~d~~ge--~p~~~~i~~I~~~~~~lv~~~~~~~~~~~dgd~v~f~ev~gm~eln~~~~~~i~~~~~~~f~i~~Dt~~f~~ 330 (1099)
++-.-+ +|. +++ +|=.+ .+.|+.+.....|.
T Consensus 190 ieCtldlyppq---------------------------vs~-------P~CTi-AntPRlpEHciEyv------------ 222 (422)
T KOG2015|consen 190 IECTLDLYPPQ---------------------------VSY-------PMCTI-ANTPRLPEHCIEYV------------ 222 (422)
T ss_pred HHhHHhhcCcc---------------------------cCc-------cccee-cCCCCCchHhhhhh------------
Confidence 211000 000 000 00000 01111111111110
Q ss_pred eeecceEEEeeCCeeecccchHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhC-CCCC-CCCHHHHHHHHHHH
Q 001331 331 YVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELG-RFPV-AGSEEDAQKLISVA 408 (1099)
Q Consensus 331 y~~gg~~~qvk~p~~i~f~sL~e~l~~p~~~l~~d~~k~~~~~~l~~~~~al~~F~~~~g-r~P~-~~~~~D~~~l~~~a 408 (1099)
. +.++.+.+- ..|. ..+.++.+.+++-+
T Consensus 223 -------------------~-------------------------------liqwpe~~~~g~~~~gdd~~hI~wi~er~ 252 (422)
T KOG2015|consen 223 -------------------K-------------------------------LIQWPELNPFGVPLDGDDPEHIEWIVERS 252 (422)
T ss_pred -------------------h-------------------------------hhcchhhCccCCCCCCCCHHHHHHHHHHH
Confidence 0 001111100 1122 22467778887777
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHhhcccccCchhhhhhhhhhHHHHHhhcCCccccceeeeeccCCCCC
Q 001331 409 TNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLP 478 (1099)
Q Consensus 409 ~~i~~~~~~~~~~~i~~~~i~~~a~~~~~el~pvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~~e~l~ 478 (1099)
.+..+++. ...++..++.-+.+..-...+.+.|+|.+..|-|++|++|.-+.|++||+.|++.++.-
T Consensus 253 ~eRA~ef~---I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~y 319 (422)
T KOG2015|consen 253 NERANEFN---ITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGIY 319 (422)
T ss_pred HHHhhhcc---cccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeeccccee
Confidence 77766653 34466777776666656667777899999999999999999999999999999998864
No 69
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-26 Score=260.15 Aligned_cols=362 Identities=19% Similarity=0.304 Sum_probs=230.4
Q ss_pred HHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEE
Q 001331 107 ETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVL 186 (1099)
Q Consensus 107 e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v 186 (1099)
+-++++.++||||||+||+|||++|||++.|+++|+|+|-|.++.+||+|||||+.+|||++||.++++..+.+||.+++
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCh-----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEcCCceEEEcCCC-CCC
Q 001331 187 STLTSKLTK-----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDG-EDP 260 (1099)
Q Consensus 187 ~~~~~~l~~-----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~~~v~d~~g-e~p 260 (1099)
..+...+.+ +|+.+||+|.-|.|+++.|..+|+.|.... +|+|.+|+.|+.|+|.+.....-.++|..+ +.|
T Consensus 85 ~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~--vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK~~~ 162 (603)
T KOG2013|consen 85 VPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAAS--VPLIESGTGGFLGQVQVIIKGKTECYECIPKPVP 162 (603)
T ss_pred EeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhc--CCceecCcccccceEEEEecCCcceecccCCCCC
Confidence 998877643 689999999999999999999999999999 999999999999999986543444555444 456
Q ss_pred cceeecccccCCCceeeeccccccc-----c-ccCC-------eeEEEEeeccc--ccC---CCC---Ccc--ccccCC-
Q 001331 261 HTGIIASISNDNPALVSCVDDERLE-----F-QDGD-------LVVFSEVHGMT--ELN---DGK---PRK--IKSARP- 316 (1099)
Q Consensus 261 ~~~~i~~I~~~~~~lv~~~~~~~~~-----~-~dgd-------~v~f~ev~gm~--eln---~~~---~~~--i~~~~~- 316 (1099)
.+..+.-|.+..-.-++|+-=.+|- | .+++ .+.-...+.|+ +.. +++ .++ +.....
T Consensus 163 kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~~~i~~~~~~ 242 (603)
T KOG2013|consen 163 KTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERRESIVEIDKN 242 (603)
T ss_pred CcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHHHHHHHHHhhc
Confidence 7777777776555666665211110 0 1111 11111111121 000 000 000 000000
Q ss_pred --c-eeeecccccccc---ceeec--ceEEEeeCCeeecccchH-HhhcCCC--CcccccCcc-------CCC-CChHHH
Q 001331 317 --Y-SFTLEEDTTNYG---TYVKG--GIVTQVKQPKVLNFKPLR-EALEDPG--DFLLSDFSK-------FDR-PPPLHL 377 (1099)
Q Consensus 317 --~-~f~i~~Dt~~f~---~y~~g--g~~~qvk~p~~i~f~sL~-e~l~~p~--~~l~~d~~k-------~~~-~~~l~~ 377 (1099)
| .+.+ ++.-|. .|.++ ..+++.+.|..++|...- ..++.-. .-..++..+ .+. ...+-.
T Consensus 243 ~~~~~~~i--~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~~q~~~~a~~~~~~v~~v~~~~~vf~~ 320 (603)
T KOG2013|consen 243 LDFGPFKI--FNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSIVQSITSAQLNDQNVWTVDEGAVVFRL 320 (603)
T ss_pred cCCChhhh--hhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccchhhhccccccCCcceeeeccccHHHHH
Confidence 0 0000 011111 12222 225555666666554321 1111100 000111110 111 112233
Q ss_pred HHHHHH-HHHHHhCCCCCCC--CHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhhcccccCchhhhhhhhhhHHH
Q 001331 378 AFQALD-KFVSELGRFPVAG--SEEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEV 454 (1099)
Q Consensus 378 ~~~al~-~F~~~~gr~P~~~--~~~D~~~l~~~a~~i~~~~~~~~~~~i~~~~i~~~a~~~~~el~pvaA~iGGiaAQEV 454 (1099)
+.++++ +.....+++-..+ +..++-+|++.+..+....-. ......-.++.+|...-..++.+.|+|||+..-|.
T Consensus 321 ~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~if~--ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~ea 398 (603)
T KOG2013|consen 321 SIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHIFG--IPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEA 398 (603)
T ss_pred HHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhhhc--cchhhhhchHhHhcccchhhhhhhhHHHHHHHHHH
Confidence 333331 1111112211122 355667777777766544311 11122344788888888889999999999999999
Q ss_pred HHhhcCCccccceeeeeccC
Q 001331 455 VKACSGKFHPLYQFFYFDSV 474 (1099)
Q Consensus 455 IKaiTgkf~PI~q~~~fD~~ 474 (1099)
+|.|+|+|.=.+..|++-..
T Consensus 399 iKvl~~~~~~~~~~f~~~~~ 418 (603)
T KOG2013|consen 399 IKVLGGDFDDCNMIFLAKRP 418 (603)
T ss_pred HHHhccchhcceeeEEccCC
Confidence 99999999999998887543
No 70
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.93 E-value=3.8e-26 Score=230.44 Aligned_cols=133 Identities=37% Similarity=0.624 Sum_probs=126.1
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 592 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 592 (1099)
+|+||||||+||+++++|+++|+ |+|+|+|+|.++.+||+||++++.+|+|++|+++++++++++||+++|+.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~ 75 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVP 75 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccceeEEEe
Q 001331 593 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVI 654 (1099)
Q Consensus 593 ~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~~~v~i 654 (1099)
..+..... .++++++|+||+|.|+.++|.+++++|+++++|+|++|+.|+.|+++++.
T Consensus 76 ~~~~~~~~----~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 76 EGISEDNL----DDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred eecChhhH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 88765432 47789999999999999999999999999999999999999999999876
No 71
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.93 E-value=1.2e-26 Score=262.22 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=140.0
Q ss_pred Cchhhhhhh---cC-HHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcc
Q 001331 492 SRYDAQISV---FG-AKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI 567 (1099)
Q Consensus 492 ~Rydrqi~l---~G-~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~di 567 (1099)
.||.||+.+ || .++|++|++++|+ |||+||.++..||. || |+|+|+|.|.||.|||+ +||+++||
T Consensus 53 ~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GV-----g~L~ivD~D~Ve~SNL~--~L~~~~di 121 (318)
T TIGR03603 53 ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NV-----GALFISDKTYFQETAEI--DLYSKEFI 121 (318)
T ss_pred HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CC-----CEEEEEcCCEechhhHH--HHhChhhc
Confidence 799999998 55 5589999999999 99999999999999 99 99999999999999999 99999999
Q ss_pred cchHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHH--HHhhcccccccEEEcCcCc
Q 001331 568 GQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLY--VDQRCLYFQKPLLESGTLG 645 (1099)
Q Consensus 568 G~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~--i~~~c~~~~~Pli~sgt~G 645 (1099)
|++|+++|++++.++||+++|+.+ .++++++|+|++|+||+.+|.. +|+.|+++++|+|.++..|
T Consensus 122 G~~K~~~a~~~L~~lnp~v~i~~~-------------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g 188 (318)
T TIGR03603 122 LKKDIRDLTSNLDALELTKNVDEL-------------KDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDG 188 (318)
T ss_pred CcHHHHHHHHHHHHhCCCCEEeeH-------------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEcc
Confidence 999999999999999999999763 2467899999999999999965 9999999999999999999
Q ss_pred ccceeEEEeCcccccCCCC
Q 001331 646 AKCNTQMVIPHLTENYGAS 664 (1099)
Q Consensus 646 ~~G~~~v~ip~~t~cy~c~ 664 (1099)
+.|++.+++|+.|+||.|.
T Consensus 189 ~~Gqv~~~~P~~t~C~~Cl 207 (318)
T TIGR03603 189 PFVFITCTLPPETGCFECL 207 (318)
T ss_pred CEEEEEEEeCCCCCcHHHc
Confidence 9999988889899999996
No 72
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.93 E-value=6.4e-26 Score=249.39 Aligned_cols=133 Identities=22% Similarity=0.311 Sum_probs=119.5
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCc--ccchHHHHHHHHHHhhCCCCeEEE
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWN--IGQAKSTVAASAATSINPRLNIEA 590 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~d--iG~~Ka~vaa~~l~~~np~~~i~~ 590 (1099)
||+||||||+||+++++|+++|| |+|+|+|+|.|+.|||+||+||+.+| +|++|+++|+++|+++||+++|++
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-----g~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~ 75 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-----RHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATG 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEE
Confidence 69999999999999999999999 99999999999999999999999999 999999999999999999999999
Q ss_pred EecccCc---------------ccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccceeEEE
Q 001331 591 LQNRVGP---------------ETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMV 653 (1099)
Q Consensus 591 ~~~~v~~---------------~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~~~v~ 653 (1099)
+...+.- +.+++ .++++++|+||+|+||.++|++++.+|..+++|+|+ +..|+.|++.+.
T Consensus 76 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l--~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~-aalGfdg~lvmr 150 (307)
T cd01486 76 IVLSIPMPGHPISESEVPSTLKDVKRL--EELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN-AALGFDSYLVMR 150 (307)
T ss_pred eeeeccccccccccccccccccCHHHH--HHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE-EEeccceEEEEE
Confidence 9876520 01111 467899999999999999999999999999999997 577888876553
No 73
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.93 E-value=4.7e-25 Score=220.34 Aligned_cols=130 Identities=35% Similarity=0.600 Sum_probs=120.4
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecC
Q 001331 113 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 192 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~ 192 (1099)
++++|+|+|+||+|+++|++|+++||++|+|+|+|.|+++|++|||+++.+|+|++||++++++|+++||+++++.+...
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCh----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEE
Q 001331 193 LTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 244 (1099)
Q Consensus 193 l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~ 244 (1099)
+++ ++++++|+||+|.++.+.+..++++|++++ +|||++++.|+.|+++.
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~--~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYG--IPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT---EEEEEEEETTEEEEEE
T ss_pred cccccccccccCCCEEEEecCCHHHHHHHHHHHHHcC--CCEEEEEeecCEEEEEE
Confidence 854 467899999999999999999999999999 99999999999999864
No 74
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.92 E-value=3.6e-26 Score=247.64 Aligned_cols=169 Identities=22% Similarity=0.275 Sum_probs=155.0
Q ss_pred CCchhHhHhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccc
Q 001331 89 QTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 166 (1099)
Q Consensus 89 ~~~~~~~~YsRQi~l--~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diG 166 (1099)
....+-.||+||+.+ +|.+||.+|.+++|||||+||+|+..+..|+.+|||++-|+|.|+|+.+||.||.+.+++.+|
T Consensus 39 Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg 118 (427)
T KOG2017|consen 39 LSLDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVG 118 (427)
T ss_pred CCHHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhh
Confidence 456777999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEE
Q 001331 167 KNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 242 (1099)
Q Consensus 167 k~Kaea~~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~v 242 (1099)
+.||++++..|+++||.|+|..+.+.++. +.+++||+|++|+|+..+|..|++.|.-.| +|+|++...++.|++
T Consensus 119 ~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLg--kpLVSgSaLr~EGQL 196 (427)
T KOG2017|consen 119 MHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLG--KPLVSGSALRWEGQL 196 (427)
T ss_pred hHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcC--Cccccccccccccee
Confidence 99999999999999999999999998865 478999999999999999999999999999 999999999999988
Q ss_pred EE---EcCCceEEEcCCCCC
Q 001331 243 FC---DFGPEFTVVDVDGED 259 (1099)
Q Consensus 243 f~---d~g~~~~v~d~~ge~ 259 (1099)
-+ +-|+-|.++-+++.+
T Consensus 197 tvYny~~GPCYRClFP~Ppp 216 (427)
T KOG2017|consen 197 TVYNYNNGPCYRCLFPNPPP 216 (427)
T ss_pred EEeecCCCceeeecCCCCcC
Confidence 32 345556665555433
No 75
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.92 E-value=3.8e-25 Score=230.28 Aligned_cols=142 Identities=27% Similarity=0.403 Sum_probs=128.3
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 592 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 592 (1099)
||+|+||||+||+++++|+++|+ |+|+|+|.|.|+.+||+||+++ .+|||++|+++++++++++||+++++++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~ 74 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-----GNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAIN 74 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEE
Confidence 69999999999999999999999 9999999999999999999965 67999999999999999999999999999
Q ss_pred cccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccc-cccEEEcCcCcccceeEEEeCcc--cccCCCC
Q 001331 593 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF-QKPLLESGTLGAKCNTQMVIPHL--TENYGAS 664 (1099)
Q Consensus 593 ~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~-~~Pli~sgt~G~~G~~~v~ip~~--t~cy~c~ 664 (1099)
.++.+++ . +++++++|+||+|+||+.+|..+++.|.+. ++|+|.++..|..|++..+.|.. ..||.|.
T Consensus 75 ~~~~~~~--~--~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 75 IKIDENN--L--EGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred eecChhh--H--HHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 8887633 1 568899999999999999999888888777 99999998889999988777654 4688886
No 76
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.92 E-value=7.5e-25 Score=234.90 Aligned_cols=145 Identities=22% Similarity=0.258 Sum_probs=131.3
Q ss_pred HhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHH
Q 001331 94 EDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALAS 173 (1099)
Q Consensus 94 ~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~ 173 (1099)
+..|.++...||.++|++|++++|+|+|+||+|+++|++|+++||++|+|+|.|.|+.+||+||+|+ ++|+|++||+++
T Consensus 8 ~~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a 86 (212)
T PRK08644 8 EEFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEAL 86 (212)
T ss_pred HHHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHH
Confidence 3455555566999999999999999999999999999999999999999999999999999999876 789999999999
Q ss_pred HHHHHHhCCCcEEEEEecCCCh----hhccCCcEEEEecCCHHHHHHHHHHHHhc-CCCceeEEEeecceeEE
Q 001331 174 VQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNH-QPAISFIKAEVRGLFGS 241 (1099)
Q Consensus 174 ~~~L~eLNp~V~v~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~-~~~ipfI~~~~~G~~G~ 241 (1099)
+++|+++||+++++.+...+++ ++++++|+||.|.++.+.+..+++.|+++ + +|||.+...|.+|+
T Consensus 87 ~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~--~p~I~~~~~~~~~~ 157 (212)
T PRK08644 87 KENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPG--KKLVAASGMAGYGD 157 (212)
T ss_pred HHHHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCC--CCEEEeehhhccCC
Confidence 9999999999999999888765 56889999999999999999999999999 9 99999865555444
No 77
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.92 E-value=8.1e-25 Score=236.66 Aligned_cols=132 Identities=23% Similarity=0.350 Sum_probs=123.8
Q ss_pred cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCC
Q 001331 104 YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA 183 (1099)
Q Consensus 104 ~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~ 183 (1099)
+|.++|++|++++|+|+|+||+|+++++||+++|||+|+|+|+|.|+++||+||++++++|+|++||++++++|+++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCCh----hhc-cCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecc
Q 001331 184 VVLSTLTSKLTK----EQL-SDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRG 237 (1099)
Q Consensus 184 V~v~~~~~~l~~----~~l-~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G 237 (1099)
++|+.+...+++ +++ .+||+||+|.|+...+..|+++|++++ +|||++...|
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~--ip~I~s~g~g 137 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK--IPVISSMGAG 137 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhC--CCEEEEeCCc
Confidence 999999988764 234 469999999999999999999999999 9999875544
No 78
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.92 E-value=1.2e-24 Score=219.38 Aligned_cols=129 Identities=31% Similarity=0.423 Sum_probs=123.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCCCh
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 195 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l~~ 195 (1099)
+|+|+|+||+|+++++||+++|+++|+|+|+|.|+++||+||||++++|+|++||++++++|+++||+++++.+...++.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999887754
Q ss_pred ----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEc
Q 001331 196 ----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 246 (1099)
Q Consensus 196 ----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~ 246 (1099)
+++.++|+||+|.++.+.+..++++|++++ +|||.+++.|+.|+++++.
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~--i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKELG--IPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcCCCcEEEEEEEE
Confidence 578999999999999999999999999999 9999999999999999876
No 79
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.91 E-value=3.4e-24 Score=227.68 Aligned_cols=157 Identities=32% Similarity=0.462 Sum_probs=128.8
Q ss_pred hhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHH
Q 001331 496 AQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVA 575 (1099)
Q Consensus 496 rqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~va 575 (1099)
.+.+-+|.+.|++|++++|+||||||+||+++++|+++|+ |+|+|+|.|.||.+||+||+ |..+|+|++|++++
T Consensus 6 ~~~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~ 79 (200)
T TIGR02354 6 ALVARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGI-----GKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEAL 79 (200)
T ss_pred HHHHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEECCCEEccccccccc-CChhhCCCHHHHHH
Confidence 3446689999999999999999999999999999999999 99999999999999999997 56689999999999
Q ss_pred HHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccc--cccEEE-cCcCcccceeEE
Q 001331 576 ASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF--QKPLLE-SGTLGAKCNTQM 652 (1099)
Q Consensus 576 a~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~--~~Pli~-sgt~G~~G~~~v 652 (1099)
+++++++||.++++++..++++++ + .++++++|+||+|+||.++|..+...|... ..+++. +|..|+.. ...
T Consensus 80 ~~~l~~inp~~~i~~~~~~i~~~~--~--~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~~g~~~-~~~ 154 (200)
T TIGR02354 80 KENISEINPYTEIEAYDEKITEEN--I--DKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAASGLAGYDD-ANS 154 (200)
T ss_pred HHHHHHHCCCCEEEEeeeeCCHhH--H--HHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEEeccccCCC-Cce
Confidence 999999999999999999887643 2 467899999999999999999876666544 445554 33333322 233
Q ss_pred E-eCc-ccccCCC
Q 001331 653 V-IPH-LTENYGA 663 (1099)
Q Consensus 653 ~-ip~-~t~cy~c 663 (1099)
+ .+. ...||.|
T Consensus 155 ~~~~~~~~~~~~~ 167 (200)
T TIGR02354 155 IKTRKISKHFYLC 167 (200)
T ss_pred EEecccCCCEEEc
Confidence 3 322 2468888
No 80
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.90 E-value=1e-23 Score=223.30 Aligned_cols=113 Identities=21% Similarity=0.413 Sum_probs=105.2
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchH
Q 001331 492 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 571 (1099)
Q Consensus 492 ~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~K 571 (1099)
.|||||+++||.++|++|.+++|+|||+||+||+++|||+++|| |+|+|+|.|.|+.+||+|||++++ ++|++|
T Consensus 7 ~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGV-----GsItIvDdD~Ve~SNL~RQfl~~~-dvGk~K 80 (287)
T PTZ00245 7 VRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGV-----RAVAVADEGLVTDADVCTNYLMQG-EAGGTR 80 (287)
T ss_pred HHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCC-----CeEEEecCCccchhhhcccccccc-ccCCcH
Confidence 79999999999999999999999999999999999999999999 999999999999999999999997 789999
Q ss_pred HHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCc
Q 001331 572 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDN 620 (1099)
Q Consensus 572 a~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn 620 (1099)
+++++++++++||.++|+++..++++. .+|++|+-+.-.
T Consensus 81 AeaAa~~L~eLNP~V~V~~i~~rld~~----------n~fqvvV~~~~~ 119 (287)
T PTZ00245 81 GARALGALQRLNPHVSVYDAVTKLDGS----------SGTRVTMAAVIT 119 (287)
T ss_pred HHHHHHHHHHHCCCcEEEEcccccCCc----------CCceEEEEEccc
Confidence 999999999999999999998887652 367888777533
No 81
>PRK07877 hypothetical protein; Provisional
Probab=99.89 E-value=4.4e-23 Score=253.03 Aligned_cols=148 Identities=24% Similarity=0.276 Sum_probs=138.6
Q ss_pred CchhHhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCcccch
Q 001331 90 TDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKN 168 (1099)
Q Consensus 90 ~~~~~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGV-g~itlvD~d~V~~~dL~~qf~~~~~diGk~ 168 (1099)
.+....||+||+.+||.++|++|++++|+|+|+| +|+.+|.+|+++|| |+|+|+|.|.|+.+||+|| +++..|+|++
T Consensus 83 ~~~~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~~ 160 (722)
T PRK07877 83 REFRAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGVN 160 (722)
T ss_pred HHhhHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhcccH
Confidence 5677899999999999999999999999999996 99999999999996 9999999999999999998 5799999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecCCChh----hccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEE
Q 001331 169 RALASVQKLQELNNAVVLSTLTSKLTKE----QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 243 (1099)
Q Consensus 169 Kaea~~~~L~eLNp~V~v~~~~~~l~~~----~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf 243 (1099)
||++++++|+++||+++|+++...++++ +++++|+||+|.|+++.+..||+.|++++ ||+|++...+ |.+.
T Consensus 161 Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~--iP~i~~~~~~--g~~~ 235 (722)
T PRK07877 161 KAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARR--IPVLMATSDR--GLLD 235 (722)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcCCC--CCcC
Confidence 9999999999999999999999998764 67789999999999999999999999999 9999988555 6664
No 82
>PRK06153 hypothetical protein; Provisional
Probab=99.89 E-value=2.5e-23 Score=235.50 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=118.9
Q ss_pred HHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCccc-ccccCcccc--hHHHHHHHHHH
Q 001331 504 KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQF-LFRDWNIGQ--AKSTVAASAAT 580 (1099)
Q Consensus 504 ~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQf-lf~~~diG~--~Ka~vaa~~l~ 580 (1099)
..|++|++++|+||||||+||.++..||++|| |+|+|+|+|.|+.||||||+ +|+.+|+|+ +|++++++++.
T Consensus 169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GV-----geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~ 243 (393)
T PRK06153 169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPV-----REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYS 243 (393)
T ss_pred HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCC-----CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHH
Confidence 57999999999999999999999999999999 99999999999999999998 678999999 99999999999
Q ss_pred hhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcC
Q 001331 581 SINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTL 644 (1099)
Q Consensus 581 ~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~ 644 (1099)
+++| .|+++...+.+++. ..+.++|+||+|+|+.++|..+++.|.++++|+|++|..
T Consensus 244 ~in~--~I~~~~~~I~~~n~-----~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 244 NMRR--GIVPHPEYIDEDNV-----DELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred HhCC--eEEEEeecCCHHHH-----HHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence 9998 57788888865432 356899999999999999999999999999999998864
No 83
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.89 E-value=5.2e-23 Score=216.12 Aligned_cols=145 Identities=19% Similarity=0.316 Sum_probs=135.9
Q ss_pred chhHhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHH
Q 001331 91 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 170 (1099)
Q Consensus 91 ~~~~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Ka 170 (1099)
+...+||.|--+|+|.++.+||++++|+|+|+||+|+.++..|+++|||+|+|+|.|.|+.+|++||.-....++|++|+
T Consensus 7 ~~~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv 86 (263)
T COG1179 7 DAYRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKV 86 (263)
T ss_pred HHHHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHH
Confidence 56678999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCChhh-----ccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecc
Q 001331 171 LASVQKLQELNNAVVLSTLTSKLTKEQ-----LSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRG 237 (1099)
Q Consensus 171 ea~~~~L~eLNp~V~v~~~~~~l~~~~-----l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G 237 (1099)
+++++++.++||+++|+.....+++++ ..+||.||+|.|+......|-.+|++++ ||+|+++..|
T Consensus 87 ~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~k--i~vIss~Gag 156 (263)
T COG1179 87 EVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNK--IPVISSMGAG 156 (263)
T ss_pred HHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcC--CCEEeecccc
Confidence 999999999999999999999888753 4479999999999999999999999999 9999765433
No 84
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.86 E-value=1.2e-21 Score=215.75 Aligned_cols=129 Identities=21% Similarity=0.278 Sum_probs=119.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCc--ccchHHHHHHHHHHHhCCCcEEEEEecCC
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDND--IGKNRALASVQKLQELNNAVVLSTLTSKL 193 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~d--iGk~Kaea~~~~L~eLNp~V~v~~~~~~l 193 (1099)
+|+|+|+||||+++|++|+++|||+|+|+|+|.|+.+||+||++++.+| +|++||++++++|+++||+|+|+.+...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999886543
Q ss_pred -----------------C----hhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEcC
Q 001331 194 -----------------T----KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFG 247 (1099)
Q Consensus 194 -----------------~----~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g 247 (1099)
+ +++++++|+|++|.|+.+.|..++.+|+.++ +|+|. ...|+.|++..-.|
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~--k~~I~-aalGfdg~lvmrhg 152 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKN--KLVIN-AALGFDSYLVMRHG 152 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhC--CcEEE-EEeccceEEEEEeC
Confidence 1 2468899999999999999999999999999 89998 58899999988665
No 85
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.6e-22 Score=212.27 Aligned_cols=153 Identities=23% Similarity=0.469 Sum_probs=142.7
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchH
Q 001331 492 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 571 (1099)
Q Consensus 492 ~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~K 571 (1099)
.-||||||+||.+.|++|+++||+|+|.+|+|.|++|||.++|| |+++++|.-.|....++-|||.+.+++|+.|
T Consensus 12 alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV-----~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~r 86 (331)
T KOG2014|consen 12 ALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGV-----GSLTLLDDRLVTEEDVGAQFLISASSVGQTR 86 (331)
T ss_pred HHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhccc-----ceeEEeeccccchhcCCceeEEchhhhchHH
Confidence 67999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccceeE
Q 001331 572 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQ 651 (1099)
Q Consensus 572 a~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~~~ 651 (1099)
+++..++++.+||.++|......+.+- +.+||.+||+||-.--..+.+-.+|.+|++++++++-++..|+.|++.
T Consensus 87 aeas~erl~~LNPmV~v~~d~edl~ek-----~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F 161 (331)
T KOG2014|consen 87 AEASLERLQDLNPMVDVSVDKEDLSEK-----DEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAF 161 (331)
T ss_pred HHHHHHHHHhcCCceEEEechhhhhhc-----chhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeee
Confidence 999999999999999999888777653 358999999888776688999999999999999999999999999876
Q ss_pred EEe
Q 001331 652 MVI 654 (1099)
Q Consensus 652 v~i 654 (1099)
+-+
T Consensus 162 ~dL 164 (331)
T KOG2014|consen 162 ADL 164 (331)
T ss_pred eeh
Confidence 643
No 86
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.86 E-value=2e-21 Score=202.35 Aligned_cols=127 Identities=23% Similarity=0.240 Sum_probs=116.6
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCCCh
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 195 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l~~ 195 (1099)
+|+|+|+||+|++++++|+++||++|+|+|.|.|+.+||+||+|. .+|+|++||++++++|+++||+++++.+...+++
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 699999999999999999999999999999999999999999965 6799999999999999999999999999888765
Q ss_pred ----hhccCCcEEEEecCCHHHHHHHHHHHHhc-CCCceeEEEeecceeEEEEEE
Q 001331 196 ----EQLSDFQAVVFTDISLDKAIEFDDFCHNH-QPAISFIKAEVRGLFGSVFCD 245 (1099)
Q Consensus 196 ----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~-~~~ipfI~~~~~G~~G~vf~d 245 (1099)
++++++|+||.|.++.+.+..+++.|.++ + +|||++...|.+|++...
T Consensus 80 ~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~--ip~i~~~~~~~~~~~~~~ 132 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKN--KPVVCASGMAGFGDSNNI 132 (174)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCC--CCEEEEehhhccCCeEEE
Confidence 57889999999999999998888777776 8 999999988888887643
No 87
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.86 E-value=1.1e-21 Score=206.68 Aligned_cols=165 Identities=28% Similarity=0.466 Sum_probs=147.2
Q ss_pred Cchhhhhhh--cCH-HHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCccc
Q 001331 492 SRYDAQISV--FGA-KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 568 (1099)
Q Consensus 492 ~Rydrqi~l--~G~-~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG 568 (1099)
.-|+|.++| .|. ...+||+...|.|||.||+|+-.+..|.|+|+ |++.+.|.|.||+.|.||-| |+++..|
T Consensus 60 NPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGI-----GkLlLfDYDkVElANMNRLF-f~P~QaG 133 (422)
T KOG2336|consen 60 NPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGI-----GKLLLFDYDKVELANMNRLF-FQPDQAG 133 (422)
T ss_pred ChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCc-----ceEEEeecchhhhhcccccc-cCccccc
Confidence 459999887 443 46899999999999999999999999999999 99999999999999999975 7899999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhh-----------cCCCEEEEccCchHHHHHHHhhccccccc
Q 001331 569 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFW-----------ENITCVINALDNVNARLYVDQRCLYFQKP 637 (1099)
Q Consensus 569 ~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~-----------~~~DvVi~alDn~~ar~~i~~~c~~~~~P 637 (1099)
.+|+++|++.|..+||++.|+.|..+++.-. + | +.|. +..|+|+.|+||++||..+|..|-..+.-
T Consensus 134 lsKv~AA~~TL~~iNPDV~iE~hn~NITTve-n-F-d~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~ 210 (422)
T KOG2336|consen 134 LSKVDAAVQTLAEINPDVVIEVHNYNITTVE-N-F-DTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQT 210 (422)
T ss_pred chHHHHHHHHHHhcCCCeEEEEeecceeeeh-h-H-HHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999887521 1 2 2222 34799999999999999999999999999
Q ss_pred EEEcCcC--cccceeEEEeCcccccCCCCC
Q 001331 638 LLESGTL--GAKCNTQMVIPHLTENYGASR 665 (1099)
Q Consensus 638 li~sgt~--G~~G~~~v~ip~~t~cy~c~~ 665 (1099)
|+++|.. .-.||.|.++|+.|.||.|.+
T Consensus 211 WmESGVSEnAVSGHIQ~i~PGetACFACaP 240 (422)
T KOG2336|consen 211 WMESGVSENAVSGHIQLIVPGETACFACAP 240 (422)
T ss_pred HHHccCccccccceeEEecCCccceecccC
Confidence 9999986 578999999999999999964
No 88
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.86 E-value=3.5e-21 Score=204.64 Aligned_cols=138 Identities=21% Similarity=0.254 Sum_probs=119.5
Q ss_pred hccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhC
Q 001331 102 AVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN 181 (1099)
Q Consensus 102 ~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLN 181 (1099)
.-+|.++|++|++++|+|+|+||+|+++|++|+++|||+++|+|.|.|+.+||+||+| ..+|+|++|++++.++|+++|
T Consensus 9 ~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~~~l~~in 87 (200)
T TIGR02354 9 ARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALKENISEIN 87 (200)
T ss_pred HhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhCCCHHHHHHHHHHHHHC
Confidence 3479999999999999999999999999999999999999999999999999999975 668999999999999999999
Q ss_pred CCcEEEEEecCCChh----hccCCcEEEEecCCHHHHHHHH-HHHHhcCCCceeEEEeecceeEEEE
Q 001331 182 NAVVLSTLTSKLTKE----QLSDFQAVVFTDISLDKAIEFD-DFCHNHQPAISFIKAEVRGLFGSVF 243 (1099)
Q Consensus 182 p~V~v~~~~~~l~~~----~l~~~dvVV~~~~~~~~~~~ln-~~c~~~~~~ipfI~~~~~G~~G~vf 243 (1099)
|+++++.+...++++ ++.++|+||.|.++.+.+..++ ++|+.++ .+++.+ ..|+.|+.+
T Consensus 88 p~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~--~~~ii~-~~g~~g~~~ 151 (200)
T TIGR02354 88 PYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYK--DKYLIA-ASGLAGYDD 151 (200)
T ss_pred CCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcC--CCcEEE-EeccccCCC
Confidence 999999998888754 5778999999999988887755 5555555 444333 367777664
No 89
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.85 E-value=3.5e-21 Score=228.93 Aligned_cols=141 Identities=20% Similarity=0.232 Sum_probs=129.7
Q ss_pred CHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcc---cchHHHHHHHHHHHhC
Q 001331 105 GRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI---GKNRALASVQKLQELN 181 (1099)
Q Consensus 105 G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~di---Gk~Kaea~~~~L~eLN 181 (1099)
-.-+.++|++++|||+|+||||+++|++|+++|||+|||+|.|.|+.+||+||++++.+|+ |++||++++++|+++|
T Consensus 329 P~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~In 408 (664)
T TIGR01381 329 PDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIF 408 (664)
T ss_pred ChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHC
Confidence 3345599999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCcEEEEEecCC-------Ch--------------hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeE
Q 001331 182 NAVVLSTLTSKL-------TK--------------EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFG 240 (1099)
Q Consensus 182 p~V~v~~~~~~l-------~~--------------~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 240 (1099)
|.|+++.+...+ ++ ++++++|+|++|.|+.+.|..++.+|..++ +|+|.+ ..|+.|
T Consensus 409 P~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~--kplI~a-AlGfdg 485 (664)
T TIGR01381 409 PSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHK--KIAISA-ALGFDS 485 (664)
T ss_pred CCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhC--CCEEEE-Eeccce
Confidence 999999887653 22 367899999999999999999999999999 999998 589999
Q ss_pred EEEEEcCC
Q 001331 241 SVFCDFGP 248 (1099)
Q Consensus 241 ~vf~d~g~ 248 (1099)
++..-.|-
T Consensus 486 ~lvmrhG~ 493 (664)
T TIGR01381 486 YVVMRHGI 493 (664)
T ss_pred EEEEEecc
Confidence 99987663
No 90
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.85 E-value=2.5e-21 Score=219.21 Aligned_cols=145 Identities=18% Similarity=0.189 Sum_probs=133.3
Q ss_pred CchhHhHhhhhhhc---cC-HHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcc
Q 001331 90 TDIDEDLHSRQLAV---YG-RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI 165 (1099)
Q Consensus 90 ~~~~~~~YsRQi~l---~G-~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~di 165 (1099)
...+-+||+|||.+ || .++|++|++++|+ +||+|+.++.+|+. |||+|+|+|+|.|+.+||+ ++++++|+
T Consensus 48 ~~~~~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~di 121 (318)
T TIGR03603 48 TKFNLITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFI 121 (318)
T ss_pred CHHHHHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhc
Confidence 34455899999999 56 4589999999999 99999999999999 9999999999999999999 89999999
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEecCCChhhccCCcEEEEecCCHHHHHH--HHHHHHhcCCCceeEEEeecceeEEEE
Q 001331 166 GKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIE--FDDFCHNHQPAISFIKAEVRGLFGSVF 243 (1099)
Q Consensus 166 Gk~Kaea~~~~L~eLNp~V~v~~~~~~l~~~~l~~~dvVV~~~~~~~~~~~--ln~~c~~~~~~ipfI~~~~~G~~G~vf 243 (1099)
|++|+++++++|.++||.+.|+.. .+.++++|+||+|.|++..+.. +|++|.+++ +|||++...|+.|++.
T Consensus 122 G~~K~~~a~~~L~~lnp~v~i~~~-----~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~--~PlV~gav~g~~Gqv~ 194 (318)
T TIGR03603 122 LKKDIRDLTSNLDALELTKNVDEL-----KDLLKDYNYIIICTEHSNISLLRGLNKLSKETK--KPNTIAFIDGPFVFIT 194 (318)
T ss_pred CcHHHHHHHHHHHHhCCCCEEeeH-----HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHC--CCEEEEEEccCEEEEE
Confidence 999999999999999999999864 3578899999999999998865 999999999 9999999999999988
Q ss_pred EEcC
Q 001331 244 CDFG 247 (1099)
Q Consensus 244 ~d~g 247 (1099)
.-++
T Consensus 195 ~~~P 198 (318)
T TIGR03603 195 CTLP 198 (318)
T ss_pred EEeC
Confidence 7653
No 91
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=8e-21 Score=211.80 Aligned_cols=160 Identities=24% Similarity=0.374 Sum_probs=143.0
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccc
Q 001331 490 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 569 (1099)
Q Consensus 490 ~~~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~ 569 (1099)
+..|||||+|+||..+|..|..++|+++|||++|||++|||++.|| |.++++|.-.|+.+.+..+|+...+++|+
T Consensus 6 ~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gi-----gs~tvvd~~~v~~~d~g~nF~~~~~~~Gk 80 (523)
T KOG2016|consen 6 PKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGI-----GSFTVVDGSKVEQGDLGNNFFLDAKSIGK 80 (523)
T ss_pred hhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhccccc-----ccEEEEecceeeecchhhHHHHHHHhhch
Confidence 3589999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccce
Q 001331 570 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 649 (1099)
Q Consensus 570 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~ 649 (1099)
+||++..+.++++||++.-......-. .--.-+..|+.+|++|+.+==+-+....+.++|+.+++||+.+-+.|+.|.
T Consensus 81 srA~a~~e~LqeLN~~V~~~~vee~p~--~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~ 158 (523)
T KOG2016|consen 81 SRAEATLEFLQELNPSVSGSFVEESPD--FLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGT 158 (523)
T ss_pred hHHHHHHHHHHHhChhhhcCccccChh--hhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEE
Confidence 999999999999999987665544322 111124689999999998866777778899999999999999999999999
Q ss_pred eEEEeCc
Q 001331 650 TQMVIPH 656 (1099)
Q Consensus 650 ~~v~ip~ 656 (1099)
+++.+..
T Consensus 159 iRI~ikE 165 (523)
T KOG2016|consen 159 IRISIKE 165 (523)
T ss_pred EEEEeee
Confidence 9998864
No 92
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.83 E-value=2.7e-21 Score=168.86 Aligned_cols=66 Identities=47% Similarity=0.795 Sum_probs=55.8
Q ss_pred eeeccCCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhcC
Q 001331 898 QFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDG 965 (1099)
Q Consensus 898 ~FeKDDd~n~hidFI~aasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~ 965 (1099)
+|||||+. |++||+|+|||||++|+||+.|++++++++|+||||++||||+|||++|+|++|++++
T Consensus 1 ~Fd~dd~~--h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~ 66 (67)
T PF02134_consen 1 EFDKDDPL--HLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQN 66 (67)
T ss_dssp ---TTSHH--HHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcHH--HHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhc
Confidence 59999987 9999999999999999999999999999999999999999999999999999999987
No 93
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2e-20 Score=200.41 Aligned_cols=158 Identities=22% Similarity=0.316 Sum_probs=141.5
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchH
Q 001331 492 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 571 (1099)
Q Consensus 492 ~Rydrqi~l~G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~K 571 (1099)
+...|++.+||.++++||.++-|+||||||+|+.++-.|+|+|+ ++|.|+|+|.|.+|.||||....-.|||.||
T Consensus 55 eqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~-----qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK 129 (430)
T KOG2018|consen 55 EQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGV-----QKIRIVDFDQVSLSSLNRHSCATLADVGTPK 129 (430)
T ss_pred HHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcC-----ceEEEechhhccHhhhhhhhhhhHhhcCCch
Confidence 44567889999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccce-e
Q 001331 572 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN-T 650 (1099)
Q Consensus 572 a~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~-~ 650 (1099)
+.++++.++++.|.++|++...-++.++++ +-.+.+.|+|+||+||++++.-+-.+|..+++++|.+-..+.+.. +
T Consensus 130 ~~clkkh~skiaPw~eIdar~~l~~~~s~e---dll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPT 206 (430)
T KOG2018|consen 130 VMCLKKHFSKIAPWCEIDARNMLWTSSSEE---DLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPT 206 (430)
T ss_pred HHHHHHHHHhhCccceecHHHhhcCCCchh---hhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCc
Confidence 999999999999999999999888877653 234567999999999999999999999999999997766666655 5
Q ss_pred EEEeCcc
Q 001331 651 QMVIPHL 657 (1099)
Q Consensus 651 ~v~ip~~ 657 (1099)
.+-+.+.
T Consensus 207 rv~v~Di 213 (430)
T KOG2018|consen 207 RVNVADI 213 (430)
T ss_pred eeehhhc
Confidence 5555443
No 94
>PRK06153 hypothetical protein; Provisional
Probab=99.79 E-value=4.1e-19 Score=201.43 Aligned_cols=126 Identities=13% Similarity=0.147 Sum_probs=115.8
Q ss_pred HHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCccc-ccCCCcccc--hHHHHHHHHHHHhCC
Q 001331 106 RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNF-VFSDNDIGK--NRALASVQKLQELNN 182 (1099)
Q Consensus 106 ~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf-~~~~~diGk--~Kaea~~~~L~eLNp 182 (1099)
.+.|+||++++|+||||||+|+.++..|+++|||+|+|+|.|.|+.+||+||+ +++++|+|+ +||+++++++.++|+
T Consensus 168 ~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~ 247 (393)
T PRK06153 168 GALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR 247 (393)
T ss_pred HHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC
Confidence 35799999999999999999999999999999999999999999999999998 568999999 999999999999998
Q ss_pred CcEEEEEecCCChh---hccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEee
Q 001331 183 AVVLSTLTSKLTKE---QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEV 235 (1099)
Q Consensus 183 ~V~v~~~~~~l~~~---~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~ 235 (1099)
. |..+...++++ .+.++|+||+|.|+.+.|..|+++|++++ ||||.+++
T Consensus 248 ~--I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~g--IP~Id~G~ 299 (393)
T PRK06153 248 G--IVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALG--IPFIDVGM 299 (393)
T ss_pred e--EEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEeee
Confidence 4 56666667653 57899999999999999999999999999 99998765
No 95
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.7e-20 Score=215.15 Aligned_cols=152 Identities=20% Similarity=0.329 Sum_probs=143.5
Q ss_pred HhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCC-----eEEEEeCCccCcccCCcccccCCCcccch
Q 001331 94 EDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVK-----SVTLHDEGTVELWDLSSNFVFSDNDIGKN 168 (1099)
Q Consensus 94 ~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg-----~itlvD~d~V~~~dL~~qf~~~~~diGk~ 168 (1099)
..|||-||+++|..-|+||.+.++++||+|++|||.+||++++||| .|++.|.|.++.|||+|||+|+..|||++
T Consensus 410 gsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~ 489 (1013)
T KOG2012|consen 410 GSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKP 489 (1013)
T ss_pred cCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCch
Confidence 3699999999999999999999999999999999999999999995 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecCC--------ChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeE
Q 001331 169 RALASVQKLQELNNAVVLSTLTSKL--------TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFG 240 (1099)
Q Consensus 169 Kaea~~~~L~eLNp~V~v~~~~~~l--------~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 240 (1099)
|+++++.....|||+++|.++...+ +++||.+.|+|..+.|+.+.|..++.-|.-+. .|++.+++.|..|
T Consensus 490 KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~--kPLLESGTlGTKG 567 (1013)
T KOG2012|consen 490 KSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYR--KPLLESGTLGTKG 567 (1013)
T ss_pred HHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhc--cchhhccCcCCcc
Confidence 9999999999999999999987764 45789999999999999999999999999999 9999999999999
Q ss_pred EEEEEcC
Q 001331 241 SVFCDFG 247 (1099)
Q Consensus 241 ~vf~d~g 247 (1099)
..-+..+
T Consensus 568 ntQVvvP 574 (1013)
T KOG2012|consen 568 NTQVVVP 574 (1013)
T ss_pred ceeEEec
Confidence 8777664
No 96
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.75 E-value=6.4e-18 Score=183.51 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=115.5
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCC-----C-----eEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhC
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGV-----K-----SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN 181 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGV-----g-----~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLN 181 (1099)
-+.++|+|||+||+|++++++|+++|+ | +|+|+|+|.|+.+||+||+ +.+.|||++||+++++++...|
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CChhHCCcHHHHHHHHHHHhcc
Confidence 368899999999999999999999973 4 9999999999999999995 6678999999999999999888
Q ss_pred CCcEEEEEecCCCh-hhccCCcEEEEecCCHHHHHHHHHHHHh---cCCCceeEEEeecceeEEEEE
Q 001331 182 NAVVLSTLTSKLTK-EQLSDFQAVVFTDISLDKAIEFDDFCHN---HQPAISFIKAEVRGLFGSVFC 244 (1099)
Q Consensus 182 p~V~v~~~~~~l~~-~~l~~~dvVV~~~~~~~~~~~ln~~c~~---~~~~ipfI~~~~~G~~G~vf~ 244 (1099)
.++++++...+++ +++.++|+||.|.|+.+.|..|++.|++ .+ .||+.+++.+.-|+|..
T Consensus 88 -~~~i~a~~~~~~~~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~--~~~ld~Gn~~~~gqv~~ 151 (244)
T TIGR03736 88 -GTDWTAHPERVERSSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGY--AYWLDLGNRADDGQVIL 151 (244)
T ss_pred -CceEEEEEeeeCchhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccc--cceecccCCCCCCcEEE
Confidence 8899999887764 4567899999999999999999999988 24 79999999999998865
No 97
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1e-17 Score=179.73 Aligned_cols=139 Identities=21% Similarity=0.338 Sum_probs=127.2
Q ss_pred HhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHH
Q 001331 94 EDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALAS 173 (1099)
Q Consensus 94 ~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~ 173 (1099)
.+...|.+.++|.++|+||+++-|.|||+||+|+.++..|+++||++|.|+|.|.|+.+.|+||-..+-.|||.||+.++
T Consensus 54 reqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~cl 133 (430)
T KOG2018|consen 54 REQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCL 133 (430)
T ss_pred HHHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHH
Confidence 34556888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEecCCCh----h-hccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEe
Q 001331 174 VQKLQELNNAVVLSTLTSKLTK----E-QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAE 234 (1099)
Q Consensus 174 ~~~L~eLNp~V~v~~~~~~l~~----~-~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~ 234 (1099)
+++++++.|+++|.+...-.+. + .+.+-|+||+|.|+.++...|-++|+.++ +++|++.
T Consensus 134 kkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~--l~Viss~ 197 (430)
T KOG2018|consen 134 KKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHG--LKVISST 197 (430)
T ss_pred HHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcC--CceEecc
Confidence 9999999999999987765433 2 34567999999999999999999999999 9999754
No 98
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.57 E-value=4.2e-16 Score=124.58 Aligned_cols=45 Identities=49% Similarity=1.046 Sum_probs=40.3
Q ss_pred cccccCCCCCCCCCCCCCcccccCCCCCcchhHHHHHHHhhhhcc
Q 001331 656 HLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLE 700 (1099)
Q Consensus 656 ~~t~cy~c~~~p~~~~~p~Ct~~~~P~~~~Hci~wAr~~F~~lF~ 700 (1099)
++|+||+|+.+|+++++|+||||+||+.++|||+|||++|+++|+
T Consensus 1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHHHHHHHHT
T ss_pred CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHHHHHHHhC
Confidence 579999999999999999999999999999999999999999995
No 99
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.53 E-value=2.3e-14 Score=151.89 Aligned_cols=156 Identities=21% Similarity=0.314 Sum_probs=131.6
Q ss_pred CCchhHhHhhhhhhc--cCH-HHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcc
Q 001331 89 QTDIDEDLHSRQLAV--YGR-ETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI 165 (1099)
Q Consensus 89 ~~~~~~~~YsRQi~l--~G~-e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~di 165 (1099)
..-.|.+-|||-+.| +|. ...+|++...|.|+|.||+|+-+|..|.++|||++.|+|.|.|+..|++|- ||.++..
T Consensus 54 sEVVDSNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRL-Ff~P~Qa 132 (422)
T KOG2336|consen 54 SEVVDSNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL-FFQPDQA 132 (422)
T ss_pred hhHhcCChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhccccc-ccCcccc
Confidence 345566889998887 554 567899999999999999999999999999999999999999999999997 5677889
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEecCCCh-h----h-----------ccCCcEEEEecCCHHHHHHHHHHHHhcCCCce
Q 001331 166 GKNRALASVQKLQELNNAVVLSTLTSKLTK-E----Q-----------LSDFQAVVFTDISLDKAIEFDDFCHNHQPAIS 229 (1099)
Q Consensus 166 Gk~Kaea~~~~L~eLNp~V~v~~~~~~l~~-~----~-----------l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip 229 (1099)
|.+|++|+.+.|.++||+|.++++...++. + | -+..|+|+.|.|+++.|..+|..|.+.+ .-
T Consensus 133 GlsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~--q~ 210 (422)
T KOG2336|consen 133 GLSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELN--QT 210 (422)
T ss_pred cchHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhh--hH
Confidence 999999999999999999999999877642 1 1 1236999999999999999999999998 66
Q ss_pred eEEEeec--ceeEEEEEEcC
Q 001331 230 FIKAEVR--GLFGSVFCDFG 247 (1099)
Q Consensus 230 fI~~~~~--G~~G~vf~d~g 247 (1099)
|.-+++. ...|.+....+
T Consensus 211 WmESGVSEnAVSGHIQ~i~P 230 (422)
T KOG2336|consen 211 WMESGVSENAVSGHIQLIVP 230 (422)
T ss_pred HHHccCccccccceeEEecC
Confidence 7766653 35566655443
No 100
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.46 E-value=1.1e-13 Score=163.83 Aligned_cols=146 Identities=20% Similarity=0.241 Sum_probs=123.3
Q ss_pred Cchhhhhhhc------CHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccC
Q 001331 492 SRYDAQISVF------GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDW 565 (1099)
Q Consensus 492 ~Rydrqi~l~------G~~~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~ 565 (1099)
+||..||..| |....++-+++||+|+|.|++|+.++.+|+.+|+ ++|+.+|.|.+ .|||||
T Consensus 104 ERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~-----~~I~~vd~D~v-~SNlnR------- 170 (637)
T TIGR03693 104 DRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGF-----PRFHAIVTDAE-EHALDR------- 170 (637)
T ss_pred HHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCC-----CcEEEEecccc-chhhhH-------
Confidence 8999999885 4556666699999999999999999999999999 99999999999 999999
Q ss_pred cccchHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCch--HHHHHHHhhccccc---ccEEE
Q 001331 566 NIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNV--NARLYVDQRCLYFQ---KPLLE 640 (1099)
Q Consensus 566 diG~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~--~ar~~i~~~c~~~~---~Pli~ 640 (1099)
||+. ++.|++ +||+++|+.+.... .+++ .+.++++|+|+...|++ .--+++|+.|++.+ +|++-
T Consensus 171 -IgEl-~e~A~~----~n~~v~v~~i~~~~---~~dl--~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~ 239 (637)
T TIGR03693 171 -IHEL-AEIAEE----TDDALLVQEIDFAE---DQHL--HEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAIC 239 (637)
T ss_pred -HHHH-HHHHHH----hCCCCceEeccCCc---chhH--HHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEE
Confidence 7777 665555 99999999987622 2223 35679999999999966 44568999999999 77778
Q ss_pred cCcCcccceeEEEeCcccccCCC
Q 001331 641 SGTLGAKCNTQMVIPHLTENYGA 663 (1099)
Q Consensus 641 sgt~G~~G~~~v~ip~~t~cy~c 663 (1099)
+|..+..|-+.. |+.|+|+.|
T Consensus 240 ~G~~~liGPlft--PgkTGCWeC 260 (637)
T TIGR03693 240 LKQVGLAGPVFQ--QHGDECFEA 260 (637)
T ss_pred cccceeecceEC--CCCCcHHHH
Confidence 888888887655 999999998
No 101
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.39 E-value=2.7e-12 Score=146.33 Aligned_cols=191 Identities=19% Similarity=0.245 Sum_probs=143.6
Q ss_pred HHHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcc---cchHHHHHHHHHHh
Q 001331 505 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI---GQAKSTVAASAATS 581 (1099)
Q Consensus 505 ~q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~di---G~~Ka~vaa~~l~~ 581 (1099)
..+++.+.|+++.|||.+||.++++|.--|| +|||.+|..+|..||--||.||.-+|- |++||++|++++++
T Consensus 334 nLd~is~~KcLLLGAGTLGC~VAR~Ll~WGv-----RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~ 408 (669)
T KOG2337|consen 334 NLDIISQTKCLLLGAGTLGCNVARNLLGWGV-----RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKE 408 (669)
T ss_pred chhhhhcceeEEecCcccchHHHHHHHhhcc-----ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHH
Confidence 3578999999999999999999999999999 999999999999999999999998776 49999999999999
Q ss_pred hCCCCeEEEEecccCcccccc-----------cc--hhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcccc
Q 001331 582 INPRLNIEALQNRVGPETENV-----------FD--DTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 648 (1099)
Q Consensus 582 ~np~~~i~~~~~~v~~~~e~~-----------~~--~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~G 648 (1099)
|+|.++-+.+.-.+.-....+ +. +++.+..|+|+-.+|..++|..=.-+|...+|-+|++.. |+-.
T Consensus 409 IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaAL-GFDs 487 (669)
T KOG2337|consen 409 IFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAAL-GFDS 487 (669)
T ss_pred hCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeeec-ccce
Confidence 999987776655443111000 00 356789999999999999999988888888888887542 3221
Q ss_pred eeE-------------------EEeC-cccccCCCCCC-CCCCC------CCcccccCCCCCcchhHHHHHHHhhhhccC
Q 001331 649 NTQ-------------------MVIP-HLTENYGASRD-PPEKQ------APMCTVHSFPHNIDHCLTWARSEFEGLLEK 701 (1099)
Q Consensus 649 ~~~-------------------v~ip-~~t~cy~c~~~-p~~~~------~p~Ct~~~~P~~~~Hci~wAr~~F~~lF~~ 701 (1099)
++. -.+| ..-.||.|..- .|..+ --.||.. -|-...=+-..|-+++-.+...
T Consensus 488 ylVMRHG~~~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCTVt-RPG~a~IA~alAVELlvslLQh 566 (669)
T KOG2337|consen 488 YLVMRHGTGRKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCTVT-RPGVANIASALAVELLVSLLQH 566 (669)
T ss_pred eEEEecCCCCcccccccccccccccCcccceeEeEcceecCCCcccccchhheeecc-CCchhHHHHHHHHHHHHHHHhC
Confidence 110 0122 35679999633 22211 2468864 4665555666788887766655
Q ss_pred C
Q 001331 702 T 702 (1099)
Q Consensus 702 ~ 702 (1099)
+
T Consensus 567 P 567 (669)
T KOG2337|consen 567 P 567 (669)
T ss_pred c
Confidence 4
No 102
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.13 E-value=3.5e-10 Score=134.55 Aligned_cols=140 Identities=18% Similarity=0.210 Sum_probs=113.9
Q ss_pred chhHhHhhhhhhcc------CHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCc
Q 001331 91 DIDEDLHSRQLAVY------GRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDND 164 (1099)
Q Consensus 91 ~~~~~~YsRQi~l~------G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~d 164 (1099)
....+||..||..+ |.+..++.++++|+|+|+||+|+.++.+|+.+|++.|..+|.|.+ .+|++|
T Consensus 100 ~a~lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR-------- 170 (637)
T TIGR03693 100 SALLDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR-------- 170 (637)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------
Confidence 44559999999984 677778889999999999999999999999999999999999999 999998
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEecCCCh---hhccCCcEEEEecC--CHHHHHHHHHHHHhcCCC-ceeEEEeecce
Q 001331 165 IGKNRALASVQKLQELNNAVVLSTLTSKLTK---EQLSDFQAVVFTDI--SLDKAIEFDDFCHNHQPA-ISFIKAEVRGL 238 (1099)
Q Consensus 165 iGk~Kaea~~~~L~eLNp~V~v~~~~~~l~~---~~l~~~dvVV~~~~--~~~~~~~ln~~c~~~~~~-ipfI~~~~~G~ 238 (1099)
||+. ++.+.+ +||.|.|+.++...++ +.++++|+||+..+ ......++|+.|.+.|.+ +|++.++..++
T Consensus 171 IgEl-~e~A~~----~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~l 245 (637)
T TIGR03693 171 IHEL-AEIAEE----TDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGL 245 (637)
T ss_pred HHHH-HHHHHH----hCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEccccee
Confidence 7776 555555 9999999998753333 46889999998877 556788999999999822 45555555556
Q ss_pred eEEEEE
Q 001331 239 FGSVFC 244 (1099)
Q Consensus 239 ~G~vf~ 244 (1099)
.|-+|.
T Consensus 246 iGPlft 251 (637)
T TIGR03693 246 AGPVFQ 251 (637)
T ss_pred ecceEC
Confidence 666554
No 103
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.09 E-value=2.9e-10 Score=130.02 Aligned_cols=138 Identities=17% Similarity=0.250 Sum_probs=116.6
Q ss_pred HHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcc---cchHHHHHHHHHHHhCCCc
Q 001331 108 TMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI---GKNRALASVQKLQELNNAV 184 (1099)
Q Consensus 108 ~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~di---Gk~Kaea~~~~L~eLNp~V 184 (1099)
...++.+.++|+.|+|.+||.||.||+--||++||++|...|+.+|--||-+++-+|. |++||++++++|++++|.+
T Consensus 334 nLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m 413 (669)
T KOG2337|consen 334 NLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSM 413 (669)
T ss_pred chhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCccc
Confidence 4578999999999999999999999999999999999999999999999999999887 4999999999999999988
Q ss_pred EEEEEecCC-------C--------------hhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEE
Q 001331 185 VLSTLTSKL-------T--------------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 243 (1099)
Q Consensus 185 ~v~~~~~~l-------~--------------~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf 243 (1099)
.-+.+.-.+ . +..++..|+|++.+|+.+.|..-.-+|-.++ . .+.-...||..|+.
T Consensus 414 ~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~--K-ivINaALGFDsylV 490 (669)
T KOG2337|consen 414 EATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKN--K-IVINAALGFDSYLV 490 (669)
T ss_pred cccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhc--c-eEeeeecccceeEE
Confidence 777664332 1 1357789999999999998877666777776 3 34446788888887
Q ss_pred EEcCC
Q 001331 244 CDFGP 248 (1099)
Q Consensus 244 ~d~g~ 248 (1099)
.-.|.
T Consensus 491 MRHG~ 495 (669)
T KOG2337|consen 491 MRHGT 495 (669)
T ss_pred EecCC
Confidence 76663
No 104
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=98.20 E-value=6e-07 Score=78.82 Aligned_cols=50 Identities=38% Similarity=0.751 Sum_probs=37.2
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCChHHHHHHhhhcCCCCCCCCCC
Q 001331 797 QFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKD 851 (1099)
Q Consensus 797 ~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 851 (1099)
+||.+|+.|++||+++|+|||++|||+ + .+...+++++ +..+|.|.|+.+
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~-~---~~~~~~~~i~-~~iIP~~~~t~~ 50 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIP-P---LDREEIKKIA-GNIIPAFAPTNA 50 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT-------S-HHHHHHHH-TTEE-B-HHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCC-c---ccHHHHHHHh-cCcCCCcCCchh
Confidence 599999999999999999999999999 4 4678888888 888999988764
No 105
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=97.93 E-value=4.2e-05 Score=76.56 Aligned_cols=121 Identities=18% Similarity=0.267 Sum_probs=96.8
Q ss_pred cCeEEEEcCChHHHHHHHHHH---HhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 114 ASNILVSGMQGLGAEIAKNLI---LAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLv---laGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
.-.|.++|||-+|.-++-+|. +.|+.+|.++|...|++.|+- +..--.-+|.+|++-+ ++|..-.+.-.|+++.
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDii--hrr~Ga~~GEyKv~Fi-~rl~~~~f~r~V~a~p 94 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDII--HRRLGAKVGEYKVDFI-KRLGRVHFGRRVEAFP 94 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhH--HHHhCCCcchhHHHHH-HHhCcCCCCceeeccc
Confidence 456999999999999999998 679999999999999999984 2233356899999864 4566777888999999
Q ss_pred cCCChhhcc--CCcEEEEec---CCHHHHHHHHHHHHhcCCCceeEEEeecceeEE
Q 001331 191 SKLTKEQLS--DFQAVVFTD---ISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGS 241 (1099)
Q Consensus 191 ~~l~~~~l~--~~dvVV~~~---~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~ 241 (1099)
+.++.++++ .=||||+|. +.......|.++|++.| +.-| ++.|.||+
T Consensus 95 E~it~dNlhll~gDVvvi~IAGGdT~PvTaaii~ya~~rG--~~Ti--sT~GVFGi 146 (217)
T COG4015 95 ENITKDNLHLLKGDVVVICIAGGDTIPVTAAIINYAKERG--IKTI--STNGVFGI 146 (217)
T ss_pred ccccccchhhhcCCEEEEEecCCCcchhHHHHHHHHHHcC--ceEe--ecCceeec
Confidence 999887644 238888774 36677788999999999 7555 67888885
No 106
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=97.58 E-value=6e-05 Score=69.04 Aligned_cols=62 Identities=26% Similarity=0.338 Sum_probs=49.5
Q ss_pred EEcCCCCcHHHHHHHHHHc---CCceeeeecCCceeecCCCc----chhccccCcHHHHHHH-----hhccCCC
Q 001331 1008 WILKDNPTLRELIQWLKDK---GLNAYSISCGSCLLFNSMFP----RHKERMDKKVVDLARE-----VAKVELP 1069 (1099)
Q Consensus 1008 ~~v~~~~TL~~li~~~~~~---~l~~~~i~~g~~~LY~~~~~----~~~~~l~~~l~~l~~~-----~~~~~~~ 1069 (1099)
++++.++||++||+++.++ .+..++|+.+++-||....| .++.||+|+|.||+.. |++..+|
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL~~~g~ei~VtD~~lp 74 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKELLSDGEEITVTDPTLP 74 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTTHHSSEEEEEEETTES
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHHhcCCCEEEEECCCCc
Confidence 3567789999999999998 88999999999999999876 4578999999999765 5555555
No 107
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.49 E-value=0.0015 Score=70.23 Aligned_cols=96 Identities=10% Similarity=0.053 Sum_probs=71.5
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
.|++.+|+|||.|.+|...++.|..+| .+|++++.+.. +.+.++.+.-.+....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~~-------------------------~~l~~l~~~~~i~~~~ 60 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPELT-------------------------ENLVKLVEEGKIRWKQ 60 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 478999999999999999999999999 68999975311 1122222223455556
Q ss_pred cCCChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEee
Q 001331 191 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEV 235 (1099)
Q Consensus 191 ~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~ 235 (1099)
..+.+..+.++|+||.++++.+....+.+.|+ .+ +++-.++.
T Consensus 61 ~~~~~~~l~~adlViaaT~d~elN~~i~~~a~-~~--~lvn~~d~ 102 (202)
T PRK06718 61 KEFEPSDIVDAFLVIAATNDPRVNEQVKEDLP-EN--ALFNVITD 102 (202)
T ss_pred cCCChhhcCCceEEEEcCCCHHHHHHHHHHHH-hC--CcEEECCC
Confidence 66777788999999999999888889999994 46 55554443
No 108
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=97.43 E-value=0.00017 Score=76.79 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=46.0
Q ss_pred CHHHHHHHhcCcEEEEcCCcchHH-HHHHHHHcCCCCC-CCccEEEe---cCCccccccCCcccc
Q 001331 502 GAKLQKKLEDAKVFIVGSGALGCE-FLKNVALMGVSCG-NQGKLTIT---DDDVIEKSNLSRQFL 561 (1099)
Q Consensus 502 G~~~q~~L~~~~v~vvG~GglG~e-vlk~La~~Gv~~~-~~g~i~iv---D~D~Ie~sNLnRQfl 561 (1099)
+...+++|++.+|.|+|.|+.|++ ++..|+.+|++.. ....++|+ |.+..+++|+|||++
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~l 160 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRAL 160 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHHH
Confidence 345789999999999999999999 9999999999433 22334666 666666666666654
No 109
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.38 E-value=0.0026 Score=68.52 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=80.1
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
|++.+|+|||.|.+|..-++.|...|. .||+++++.- +.+.++-..-.|.....
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~-------------------------~~l~~l~~~~~i~~~~~ 60 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE-------------------------SELTLLAEQGGITWLAR 60 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHHcCCEEEEeC
Confidence 678999999999999999999999996 8999987432 11122212225777777
Q ss_pred CCChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEE
Q 001331 192 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 243 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf 243 (1099)
.+..+.+.++++||.++++.+....+...|++.+ +++-.++--.+..++|
T Consensus 61 ~~~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~--ilvn~~d~~e~~~f~~ 110 (205)
T TIGR01470 61 CFDADILEGAFLVIAATDDEELNRRVAHAARARG--VPVNVVDDPELCSFIF 110 (205)
T ss_pred CCCHHHhCCcEEEEECCCCHHHHHHHHHHHHHcC--CEEEECCCcccCeEEE
Confidence 7777788999999999988888889999999999 8886666555544444
No 110
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0009 Score=77.98 Aligned_cols=100 Identities=20% Similarity=0.305 Sum_probs=71.4
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEE
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 591 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 591 (1099)
.+|+|+|||++|+.++.+||+.|. ++|+|.|... .| ++++...... +++++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-----~~V~iAdRs~-------------------~~----~~~i~~~~~~-~v~~~ 52 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-----GEVTIADRSK-------------------EK----CARIAELIGG-KVEAL 52 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-----ceEEEEeCCH-------------------HH----HHHHHhhccc-cceeE
Confidence 589999999999999999999998 8999997321 11 2222222211 56666
Q ss_pred ecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcC
Q 001331 592 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTL 644 (1099)
Q Consensus 592 ~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~ 644 (1099)
.-.+.... .+ .+.++++|+||+|+.-.-.+ -+-+.|.+.++++++....
T Consensus 53 ~vD~~d~~-al--~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 53 QVDAADVD-AL--VALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYY 101 (389)
T ss_pred EecccChH-HH--HHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccC
Confidence 55554322 12 36678999999999877777 5667999999999986544
No 111
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.17 E-value=0.0012 Score=66.31 Aligned_cols=78 Identities=23% Similarity=0.292 Sum_probs=58.0
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEE
Q 001331 110 RRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 189 (1099)
Q Consensus 110 ~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~ 189 (1099)
..+++++|+|+|+||.|..+++.|...|+++|+|+..+ ..|++.+.+.+ +...+...
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt-------------------~~ra~~l~~~~----~~~~~~~~ 64 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT-------------------PERAEALAEEF----GGVNIEAI 64 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS-------------------HHHHHHHHHHH----TGCSEEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC-------------------HHHHHHHHHHc----Ccccccee
Confidence 36899999999999999999999999999999998742 23677666666 44445444
Q ss_pred ecCCChhhccCCcEEEEecCC
Q 001331 190 TSKLTKEQLSDFQAVVFTDIS 210 (1099)
Q Consensus 190 ~~~l~~~~l~~~dvVV~~~~~ 210 (1099)
.-.=-.+.+.++|+||.|+..
T Consensus 65 ~~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 65 PLEDLEEALQEADIVINATPS 85 (135)
T ss_dssp EGGGHCHHHHTESEEEE-SST
T ss_pred eHHHHHHHHhhCCeEEEecCC
Confidence 322122467899999998864
No 112
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.11 E-value=0.0088 Score=61.70 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=67.6
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
.|++.+|+|+|.|.+|...++.|...|. .+++++++.. +.+.++. .+....
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~-------------------------~~l~~l~---~i~~~~ 60 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEIC-------------------------KEMKELP---YITWKQ 60 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccC-------------------------HHHHhcc---CcEEEe
Confidence 5789999999999999999999999997 8999875432 1112221 244556
Q ss_pred cCCChhhccCCcEEEEecCCHHHHHHHHHHHHhcC
Q 001331 191 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ 225 (1099)
Q Consensus 191 ~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~ 225 (1099)
..+.++.+.++++||.++++.+....+...|++++
T Consensus 61 ~~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~~ 95 (157)
T PRK06719 61 KTFSNDDIKDAHLIYAATNQHAVNMMVKQAAHDFQ 95 (157)
T ss_pred cccChhcCCCceEEEECCCCHHHHHHHHHHHHHCC
Confidence 67777889999999999999888888999998744
No 113
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.97 E-value=0.002 Score=72.86 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=58.6
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeE
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 588 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i 588 (1099)
+..++|+|+|+||.|..++..|+.+|+ ++|+|+|.+ ..|++.+++.+...++...+
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~-----~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~ 180 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGV-----ERLTIFDVD-------------------PARAAALADELNARFPAARA 180 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEE
Confidence 566799999999999999999999999 899999865 25888888888777776444
Q ss_pred EEEecccCcccccccchhhhcCCCEEEEcc
Q 001331 589 EALQNRVGPETENVFDDTFWENITCVINAL 618 (1099)
Q Consensus 589 ~~~~~~v~~~~e~~~~~~~~~~~DvVi~al 618 (1099)
.... ++ .+...++|+||||+
T Consensus 181 ~~~~--------~~--~~~~~~aDiVInaT 200 (284)
T PRK12549 181 TAGS--------DL--AAALAAADGLVHAT 200 (284)
T ss_pred Eecc--------ch--HhhhCCCCEEEECC
Confidence 3221 01 12346799999996
No 114
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.94 E-value=0.002 Score=61.60 Aligned_cols=89 Identities=19% Similarity=0.130 Sum_probs=65.8
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
.|++.+|+|||.|.+|..=++.|..+| .+++++.++. . .+. ..++ ...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~---------------------~~~-------~~i~--~~~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-E---------------------FSE-------GLIQ--LIR 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-H---------------------HHH-------TSCE--EEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-h---------------------hhh-------hHHH--HHh
Confidence 478999999999999999999999999 5999998764 0 000 2222 344
Q ss_pred cCCChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEe
Q 001331 191 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAE 234 (1099)
Q Consensus 191 ~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~ 234 (1099)
..+. +.+.++++|+.++++......+.+.|++++ +|+-.++
T Consensus 52 ~~~~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~--i~vn~~D 92 (103)
T PF13241_consen 52 REFE-EDLDGADLVFAATDDPELNEAIYADARARG--ILVNVVD 92 (103)
T ss_dssp SS-G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTT--SEEEETT
T ss_pred hhHH-HHHhhheEEEecCCCHHHHHHHHHHHhhCC--EEEEECC
Confidence 4554 668899999999999898899999999999 8776544
No 115
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.93 E-value=0.0034 Score=67.41 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=64.2
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
.|.+++|+|||.|.+|...++.|...|. +|+|++.+. .+. +.+ +.+.-.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga------~V~VIs~~~------~~~---------------l~~----l~~~~~ 55 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGA------HIVVISPEL------TEN---------------LVK----LVEEGK 55 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEcCCC------CHH---------------HHH----HHhCCC
Confidence 3788999999999999999999999996 899987531 110 111 111112
Q ss_pred EEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccE
Q 001331 588 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPL 638 (1099)
Q Consensus 588 i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pl 638 (1099)
+...... |....+.++|+||.|+|+.+.-..|...| ..++++
T Consensus 56 i~~~~~~--------~~~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lv 97 (202)
T PRK06718 56 IRWKQKE--------FEPSDIVDAFLVIAATNDPRVNEQVKEDL-PENALF 97 (202)
T ss_pred EEEEecC--------CChhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcE
Confidence 3333221 33345688999999999999999999999 456644
No 116
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0039 Score=72.80 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=71.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCCC
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT 194 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l~ 194 (1099)
.+|+|+|+|++|+-+|.+|+..|.+.|+|.|... ..+.++.+.... ++++..-+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-----------------------~~~~~i~~~~~~-~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-----------------------EKCARIAELIGG-KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-----------------------HHHHHHHhhccc-cceeEEeccc
Confidence 5899999999999999999999999999998422 223334333322 4555444332
Q ss_pred -----hhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeeccee
Q 001331 195 -----KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLF 239 (1099)
Q Consensus 195 -----~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~ 239 (1099)
.+.++++|+||.+....-.. .+-+.|-+.+ +.++.+....-.
T Consensus 58 d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~g--v~yvDts~~~~~ 104 (389)
T COG1748 58 DVDALVALIKDFDLVINAAPPFVDL-TILKACIKTG--VDYVDTSYYEEP 104 (389)
T ss_pred ChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhC--CCEEEcccCCch
Confidence 25788999999988765544 7888999999 999887655544
No 117
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.88 E-value=0.0034 Score=70.99 Aligned_cols=76 Identities=24% Similarity=0.286 Sum_probs=59.3
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
+..++|+|+|+||+|..++..|+..|+++|+|+|.+ ..|++...+.+.+..+.+.+....
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~- 184 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS- 184 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc-
Confidence 566899999999999999999999999999999864 258899999888877765543321
Q ss_pred CCChhhccCCcEEEEec
Q 001331 192 KLTKEQLSDFQAVVFTD 208 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~ 208 (1099)
.+ .+.+.++|+||.|+
T Consensus 185 ~~-~~~~~~aDiVInaT 200 (284)
T PRK12549 185 DL-AAALAAADGLVHAT 200 (284)
T ss_pred ch-HhhhCCCCEEEECC
Confidence 11 23456788888876
No 118
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.87 E-value=0.017 Score=62.77 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=77.5
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
++++.+|||||.|.+|..=++.|..+|. +||++-++.. +.|+++-..-.++...
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~-------------------------~el~~l~~~~~i~~~~ 75 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFS-------------------------KEFLDLKKYGNLKLIK 75 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 4668899999999999999999999995 7999876532 1111221122467777
Q ss_pred cCCChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecce
Q 001331 191 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGL 238 (1099)
Q Consensus 191 ~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 238 (1099)
..+.++.+.++++||+|+++.+....+.+.|++.+ +++..++.-..
T Consensus 76 r~~~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~--~lvn~vd~p~~ 121 (223)
T PRK05562 76 GNYDKEFIKDKHLIVIATDDEKLNNKIRKHCDRLY--KLYIDCSDYKK 121 (223)
T ss_pred CCCChHHhCCCcEEEECCCCHHHHHHHHHHHHHcC--CeEEEcCCccc
Confidence 78888889999999999999999999999999999 77776654443
No 119
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=96.85 E-value=0.0032 Score=63.46 Aligned_cols=126 Identities=13% Similarity=0.206 Sum_probs=93.9
Q ss_pred cCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEE
Q 001331 511 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 590 (1099)
Q Consensus 511 ~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 590 (1099)
...|.++|||-+|--++-+|... +.|.--+|.++|...|+..++-.--+ -.-+|.+|++-+++. -.-.+.-+|++
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~--HRGGperi~v~Dgqrve~dDiihrr~--Ga~~GEyKv~Fi~rl-~~~~f~r~V~a 92 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEV--HRGGPERIYVFDGQRVEEDDIIHRRL--GAKVGEYKVDFIKRL-GRVHFGRRVEA 92 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHH--hcCCCeEEEEecCcccCchhhHHHHh--CCCcchhHHHHHHHh-CcCCCCceeec
Confidence 45799999999999999888743 22222899999999999999742222 357999999987754 34456678999
Q ss_pred EecccCcccccccchhhhcCCCEEEEcc---CchHHHHHHHhhcccccccEEEcCcCcccce
Q 001331 591 LQNRVGPETENVFDDTFWENITCVINAL---DNVNARLYVDQRCLYFQKPLLESGTLGAKCN 649 (1099)
Q Consensus 591 ~~~~v~~~~e~~~~~~~~~~~DvVi~al---Dn~~ar~~i~~~c~~~~~Pli~sgt~G~~G~ 649 (1099)
++.+++.++.+++ .+ |+|+-|+ |..+.-..+-..|++.+..-| +|.|-.|.
T Consensus 93 ~pE~it~dNlhll-----~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~Ti--sT~GVFGi 146 (217)
T COG4015 93 FPENITKDNLHLL-----KG-DVVVICIAGGDTIPVTAAIINYAKERGIKTI--STNGVFGI 146 (217)
T ss_pred ccccccccchhhh-----cC-CEEEEEecCCCcchhHHHHHHHHHHcCceEe--ecCceeec
Confidence 9999998876543 33 8777665 677888889999999998877 34444443
No 120
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.82 E-value=0.0029 Score=63.47 Aligned_cols=79 Identities=23% Similarity=0.367 Sum_probs=56.3
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCC
Q 001331 507 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 586 (1099)
Q Consensus 507 ~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~ 586 (1099)
..|.+++++|+|+||.|..+++.|+..|+ .+|+|+. |. ..|++.+++.+ +..
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~-----~~i~i~n----------Rt---------~~ra~~l~~~~----~~~ 59 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGA-----KEITIVN----------RT---------PERAEALAEEF----GGV 59 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTS-----SEEEEEE----------SS---------HHHHHHHHHHH----TGC
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCC-----CEEEEEE----------CC---------HHHHHHHHHHc----Ccc
Confidence 36889999999999999999999999999 8899975 32 23566666555 444
Q ss_pred eEEEEecccCcccccccchhhhcCCCEEEEccCch
Q 001331 587 NIEALQNRVGPETENVFDDTFWENITCVINALDNV 621 (1099)
Q Consensus 587 ~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~ 621 (1099)
.+..+... ++ .+.+.++|+||+|+.-.
T Consensus 60 ~~~~~~~~------~~--~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 60 NIEAIPLE------DL--EEALQEADIVINATPSG 86 (135)
T ss_dssp SEEEEEGG------GH--CHHHHTESEEEE-SSTT
T ss_pred ccceeeHH------HH--HHHHhhCCeEEEecCCC
Confidence 44444321 11 24578999999998643
No 121
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.47 E-value=0.012 Score=60.75 Aligned_cols=85 Identities=18% Similarity=0.285 Sum_probs=62.3
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
.|++.+|+|||.|.+|...++.|...|. +++||+++..+. +.++ +.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga------~V~VIsp~~~~~-------------------------l~~l-~~-- 55 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA------FVTVVSPEICKE-------------------------MKEL-PY-- 55 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCccCHH-------------------------HHhc-cC--
Confidence 4788999999999999999999999997 999997663210 0011 11
Q ss_pred EEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccc
Q 001331 588 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF 634 (1099)
Q Consensus 588 i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~ 634 (1099)
++..... |....+.++|+||.|+|+.+....+...|...
T Consensus 56 i~~~~~~--------~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 56 ITWKQKT--------FSNDDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred cEEEecc--------cChhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 2222222 33345688999999999999999999888764
No 122
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.44 E-value=0.01 Score=64.00 Aligned_cols=95 Identities=18% Similarity=0.167 Sum_probs=70.9
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeE
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 588 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i 588 (1099)
|.+++|+|||.|.+|..-++.|...|. +++|++++.- + .+.+ +.+ .-+|
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga------~VtVvsp~~~------------------~---~l~~-l~~---~~~i 55 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA------QLRVIAEELE------------------S---ELTL-LAE---QGGI 55 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC------EEEEEcCCCC------------------H---HHHH-HHH---cCCE
Confidence 678899999999999999999999996 9999987531 0 0111 111 1245
Q ss_pred EEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcC
Q 001331 589 EALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 642 (1099)
Q Consensus 589 ~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sg 642 (1099)
+.+...+. ...+.++++||.|+|+.+....+...|...++|+-.++
T Consensus 56 ~~~~~~~~--------~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d 101 (205)
T TIGR01470 56 TWLARCFD--------ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVD 101 (205)
T ss_pred EEEeCCCC--------HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 55554432 24468999999999999999999999999999985444
No 123
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.43 E-value=0.0042 Score=59.35 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=63.2
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
.|++.+|+|||.|.+|..-++.|..+|. +++|+..+. +... ..++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA------~v~vis~~~-~~~~----------------------------~~i~ 48 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGA------KVTVISPEI-EFSE----------------------------GLIQ 48 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTB------EEEEEESSE-HHHH----------------------------TSCE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECCch-hhhh----------------------------hHHH
Confidence 4788999999999999999999999996 999998775 1000 1122
Q ss_pred EEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEE
Q 001331 588 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLE 640 (1099)
Q Consensus 588 i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~ 640 (1099)
.....+ . ..++++++|+.|+|+......+.+.|...++|+-.
T Consensus 49 --~~~~~~--------~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~ 90 (103)
T PF13241_consen 49 --LIRREF--------E-EDLDGADLVFAATDDPELNEAIYADARARGILVNV 90 (103)
T ss_dssp --EEESS---------G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEE
T ss_pred --HHhhhH--------H-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEE
Confidence 222222 1 33578999999999999999999999999998764
No 124
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.95 E-value=0.024 Score=61.63 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=71.2
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
.+++.+|+|||.|.+|..=++.|...|. +|+||-++.- + + +.+ + .-++ +
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA------~VtVVap~i~------------~-e--------l~~-l-~~~~--~ 70 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC------YVYILSKKFS------------K-E--------FLD-L-KKYG--N 70 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCCCC------------H-H--------HHH-H-HhCC--C
Confidence 4567899999999999999999999996 9999976631 0 0 001 1 0122 3
Q ss_pred EEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCc
Q 001331 588 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGT 643 (1099)
Q Consensus 588 i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt 643 (1099)
|+.+...+. ...++++++||.|+|+.+.-..|...|...++++..+..
T Consensus 71 i~~~~r~~~--------~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 71 LKLIKGNYD--------KEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred EEEEeCCCC--------hHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 555544432 345689999999999999999999999999988775443
No 125
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.89 E-value=0.088 Score=63.68 Aligned_cols=104 Identities=12% Similarity=0.100 Sum_probs=80.1
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
.|++.+|+|||.|.++..=++.|..+|. +||++=++.. +.|.++-..-.++...
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------------------~~~~~l~~~~~i~~~~ 62 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------------------PQFTAWADAGMLTLVE 62 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 5789999999999999999999999997 7888754321 1222333333577777
Q ss_pred cCCChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEE
Q 001331 191 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 242 (1099)
Q Consensus 191 ~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~v 242 (1099)
..+.++.+.++++||.|+++.+...+|.+.|++.+ +++-.++.-....++
T Consensus 63 ~~~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~--~lvN~~d~~~~~~f~ 112 (457)
T PRK10637 63 GPFDESLLDTCWLAIAATDDDAVNQRVSEAAEARR--IFCNVVDAPKAASFI 112 (457)
T ss_pred CCCChHHhCCCEEEEECCCCHHHhHHHHHHHHHcC--cEEEECCCcccCeEE
Confidence 78888889999999999999999999999999999 776666554443333
No 126
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.87 E-value=0.0086 Score=70.63 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=65.2
Q ss_pred EEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEEec
Q 001331 514 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQN 593 (1099)
Q Consensus 514 v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~~ 593 (1099)
|+|+|+|.+|..+++.|++.+-. .++++.|.+. .|++.+++.+ ...+++....
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~----~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~ 53 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPF----EEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQV 53 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-----EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCC----CcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEE
Confidence 78999999999999999999851 3888887443 2222333222 3346677666
Q ss_pred ccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcC
Q 001331 594 RVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 642 (1099)
Q Consensus 594 ~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sg 642 (1099)
.+.... .+ .+++++.|+||||+... ....+-+.|.+.+++++|.+
T Consensus 54 d~~~~~-~l--~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 54 DVNDPE-SL--AELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDTS 98 (386)
T ss_dssp -TTTHH-HH--HHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEESS
T ss_pred ecCCHH-HH--HHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeeccc
Confidence 665432 23 56789999999999877 55678889999999999943
No 127
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.85 E-value=0.052 Score=58.67 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=76.3
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
.|.+++|+|||.|.+|.-=++.|+.+|. +++++-++. . +.+..+-....+....
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~--~-----------------------~el~~~~~~~~i~~~~ 62 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEF--E-----------------------PELKALIEEGKIKWIE 62 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCc--c-----------------------HHHHHHHHhcCcchhh
Confidence 4678999999999999999999999997 777775533 1 1122222222355666
Q ss_pred cCCChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecce
Q 001331 191 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGL 238 (1099)
Q Consensus 191 ~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 238 (1099)
..+..+.+..+++||.++++.+...++.+.|++++ +|.-.++--.+
T Consensus 63 ~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~--i~vNv~D~p~~ 108 (210)
T COG1648 63 REFDAEDLDDAFLVIAATDDEELNERIAKAARERR--ILVNVVDDPEL 108 (210)
T ss_pred cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhC--CceeccCCccc
Confidence 66777777789999999999999999999999999 77776666555
No 128
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.62 E-value=0.03 Score=63.33 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=51.7
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
+.+++|+|+|+||.|..|+-.|+..|+++|+|++.+. .||+++++++.+..+...+.....
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~~~ 185 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGVDA 185 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEecCH
Confidence 4568999999999999999999999999999997532 378887777654444322222110
Q ss_pred CCChhhccCCcEEEEec
Q 001331 192 KLTKEQLSDFQAVVFTD 208 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~ 208 (1099)
.-..+.+..+|+||.|+
T Consensus 186 ~~~~~~~~~~divINaT 202 (283)
T PRK14027 186 RGIEDVIAAADGVVNAT 202 (283)
T ss_pred hHHHHHHhhcCEEEEcC
Confidence 00012334566666554
No 129
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.87 E-value=0.07 Score=60.63 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=54.2
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeE
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 588 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i 588 (1099)
+.+++++|+|+||+|..++..|+..|+ .+|+|++.+. -...|++.+++.+....+.+.+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~-----~~V~I~~R~~----------------~~~~~a~~l~~~l~~~~~~~~~ 182 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGA-----KEITIFNIKD----------------DFYERAEQTAEKIKQEVPECIV 182 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCc----------------hHHHHHHHHHHHHhhcCCCcee
Confidence 567889999999999999999999999 7899986421 0113555666666555554444
Q ss_pred EEEecccCcccccccchhhhcCCCEEEEcc
Q 001331 589 EALQNRVGPETENVFDDTFWENITCVINAL 618 (1099)
Q Consensus 589 ~~~~~~v~~~~e~~~~~~~~~~~DvVi~al 618 (1099)
.... +... +.+ ...++.+|+||||+
T Consensus 183 ~~~d--~~~~-~~~--~~~~~~~DilINaT 207 (289)
T PRK12548 183 NVYD--LNDT-EKL--KAEIASSDILVNAT 207 (289)
T ss_pred EEec--hhhh-hHH--HhhhccCCEEEEeC
Confidence 3222 2211 111 12346679999986
No 130
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.84 E-value=0.058 Score=61.07 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=53.3
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeE
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 588 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i 588 (1099)
+.+++|+|+|+||.|..++-.|+..|+ .+|+|+|.+. .|++.+++.+....+...+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~-----~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~ 180 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGV-----QKLQVADLDT-------------------SRAQALADVINNAVGREAV 180 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcCCH-------------------HHHHHHHHHHhhccCcceE
Confidence 456799999999999999999999999 8999986432 3777777776544433222
Q ss_pred EEEecccCcccccccchhhhcCCCEEEEcc
Q 001331 589 EALQNRVGPETENVFDDTFWENITCVINAL 618 (1099)
Q Consensus 589 ~~~~~~v~~~~e~~~~~~~~~~~DvVi~al 618 (1099)
.... . .. + ......+|+||||+
T Consensus 181 ~~~~--~----~~-~-~~~~~~~divINaT 202 (283)
T PRK14027 181 VGVD--A----RG-I-EDVIAAADGVVNAT 202 (283)
T ss_pred EecC--H----hH-H-HHHHhhcCEEEEcC
Confidence 2111 0 00 0 12346789999996
No 131
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.84 E-value=0.061 Score=60.89 Aligned_cols=75 Identities=19% Similarity=0.088 Sum_probs=52.9
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe-
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT- 190 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~- 190 (1099)
+++++|+|+|+||.|..++..|...|+++|+|++.+ ..||+.+++++..... +....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~~---~~~~~~ 180 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVGV---ITRLEG 180 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcCc---ceeccc
Confidence 567899999999999999999999999999999742 2377777776643311 11111
Q ss_pred -cCCChhhccCCcEEEEecC
Q 001331 191 -SKLTKEQLSDFQAVVFTDI 209 (1099)
Q Consensus 191 -~~l~~~~l~~~dvVV~~~~ 209 (1099)
.++ .+.+.++|+||.|+.
T Consensus 181 ~~~~-~~~~~~~DiVInaTp 199 (282)
T TIGR01809 181 DSGG-LAIEKAAEVLVSTVP 199 (282)
T ss_pred hhhh-hhcccCCCEEEECCC
Confidence 111 134567899998864
No 132
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.69 E-value=0.1 Score=52.80 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=54.1
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhCCC-eEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCc--EEEEEe
Q 001331 115 SNILVSGM-QGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAV--VLSTLT 190 (1099)
Q Consensus 115 s~VlIiG~-gglG~EiaKnLvlaGVg-~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V--~v~~~~ 190 (1099)
.||.|+|+ |.+|+.+|-.|++.|+. +|.|+|.+ ..+++..+.-|....+.. .+....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~ 61 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPVRITS 61 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC-------------------cccceeeehhhhhhhhhccccccccc
Confidence 37999999 99999999999999985 49999852 235666666666554433 333333
Q ss_pred cCCChhhccCCcEEEEecC
Q 001331 191 SKLTKEQLSDFQAVVFTDI 209 (1099)
Q Consensus 191 ~~l~~~~l~~~dvVV~~~~ 209 (1099)
-+.+.+++.|+||.+..
T Consensus 62 --~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 62 --GDYEALKDADIVVITAG 78 (141)
T ss_dssp --SSGGGGTTESEEEETTS
T ss_pred --ccccccccccEEEEecc
Confidence 34567889999999864
No 133
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.66 E-value=0.092 Score=59.26 Aligned_cols=75 Identities=25% Similarity=0.321 Sum_probs=55.4
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecC
Q 001331 113 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 192 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~ 192 (1099)
...+|+|+|+||.+..|+..|...|+.+|+|+..+ ..||+.+++.+.+..+.+.......
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~~~~~- 184 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT-------------------RERAEELADLFGELGAAVEAAALAD- 184 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhcccccccccccc-
Confidence 46899999999999999999999999999998742 3488888888888877333332221
Q ss_pred CChhhccCCcEEEEecC
Q 001331 193 LTKEQLSDFQAVVFTDI 209 (1099)
Q Consensus 193 l~~~~l~~~dvVV~~~~ 209 (1099)
+ +....+|+||-|+.
T Consensus 185 ~--~~~~~~dliINaTp 199 (283)
T COG0169 185 L--EGLEEADLLINATP 199 (283)
T ss_pred c--ccccccCEEEECCC
Confidence 1 11116888887763
No 134
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.65 E-value=0.053 Score=63.90 Aligned_cols=75 Identities=25% Similarity=0.309 Sum_probs=57.0
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
|.+++|+|||+|-+|.-+||+|...|++.|+|+..+ .-||+.+++++. +.+..-
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT-------------------~erA~~La~~~~-------~~~~~l 229 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT-------------------LERAEELAKKLG-------AEAVAL 229 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHhC-------CeeecH
Confidence 889999999999999999999999999999997532 237777777774 222211
Q ss_pred CCChhhccCCcEEEEecCCHH
Q 001331 192 KLTKEQLSDFQAVVFTDISLD 212 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~~~~~ 212 (1099)
+-..+.+..+|+||.++....
T Consensus 230 ~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 230 EELLEALAEADVVISSTSAPH 250 (414)
T ss_pred HHHHHhhhhCCEEEEecCCCc
Confidence 112357889999999987544
No 135
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.57 E-value=0.11 Score=58.77 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=53.4
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
.+.+++|+|+|+||+|..+++.|...|+.+|++++.+ ..|++.+++.+....+ +.+ .
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~ 176 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---D 176 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---c
Confidence 3677899999999999999999999999999999752 2366666666653321 222 1
Q ss_pred cCCChhhccCCcEEEEecC
Q 001331 191 SKLTKEQLSDFQAVVFTDI 209 (1099)
Q Consensus 191 ~~l~~~~l~~~dvVV~~~~ 209 (1099)
... .+.+.++|+||.|+.
T Consensus 177 ~~~-~~~~~~~DivInaTp 194 (278)
T PRK00258 177 LEL-QEELADFDLIINATS 194 (278)
T ss_pred ccc-hhccccCCEEEECCc
Confidence 111 245677899888864
No 136
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.56 E-value=0.12 Score=58.72 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=44.2
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEE
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVL 186 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v 186 (1099)
+.+++|+|+|+||+|..|+..|+..|+++|+|++.+.- ...|++.+.+.+.+..+.+.+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~ 182 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIV 182 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCcee
Confidence 56789999999999999999999999999999885210 013666666766555444333
No 137
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.50 E-value=0.13 Score=61.80 Aligned_cols=127 Identities=21% Similarity=0.217 Sum_probs=78.3
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
|++++|+|+|.|++|.++|+.|+..|. .++++|.+.- ...+...++|.+++ +.....
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~~----~~~~~~ 59 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEE------------------DQLKEALEELGELG----IELVLG 59 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------HHHHHHHHHHHhcC----CEEEeC
Confidence 678999999999999999999999997 7999986431 01112223343332 334444
Q ss_pred CCChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEcCCceEEEcCCCCCCcceeeccc
Q 001331 192 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASI 268 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~~~v~d~~ge~p~~~~i~~I 268 (1099)
...++...++|+||.+.... ....+-..|++++ ||++.-.. .++.... ..--.|.=++|......++..|
T Consensus 60 ~~~~~~~~~~d~vv~~~g~~-~~~~~~~~a~~~~--i~~~~~~~-~~~~~~~---~~vI~ITGS~GKTTt~~~l~~i 129 (450)
T PRK14106 60 EYPEEFLEGVDLVVVSPGVP-LDSPPVVQAHKKG--IEVIGEVE-LAYRFSK---APIVAITGTNGKTTTTTLLGEI 129 (450)
T ss_pred CcchhHhhcCCEEEECCCCC-CCCHHHHHHHHCC--CcEEeHHH-HHHhhcC---CCEEEEeCCCchHHHHHHHHHH
Confidence 44455667899999876532 2234677889999 88875211 1111111 2234444556666555555554
No 138
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.32 E-value=0.098 Score=59.34 Aligned_cols=171 Identities=13% Similarity=0.098 Sum_probs=89.7
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCC---cccccccCcccchHHHHHHHHHHhhCCCCeE
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLS---RQFLFRDWNIGQAKSTVAASAATSINPRLNI 588 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLn---RQflf~~~diG~~Ka~vaa~~l~~~np~~~i 588 (1099)
.+|.|||+|..|+.++.+|++.|. .++++|.+.=.....- ++.+=+-..-|......+...+. ++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~------~l 73 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV------DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALA------RL 73 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC------EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHh------Ce
Confidence 389999999999999999999998 8999986542221100 00000000112211111111111 11
Q ss_pred EEEecccCcccccccchhhhcCCCEEEEccC-chHHHHHH----HhhcccccccEEEcCcCcccceeEEEeCcccccCCC
Q 001331 589 EALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYV----DQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGA 663 (1099)
Q Consensus 589 ~~~~~~v~~~~e~~~~~~~~~~~DvVi~alD-n~~ar~~i----~~~c~~~~~Pli~sgt~G~~G~~~v~ip~~t~cy~c 663 (1099)
+.. . + + +-++++|+||.|+- +.+.++.+ ...|-..+..+....+.-.-........+...+...
T Consensus 74 ~~~-----~---~-~--~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~ 142 (286)
T PRK07819 74 RFT-----T---D-L--GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGL 142 (286)
T ss_pred Eee-----C---C-H--HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEE
Confidence 111 0 1 1 22589999999975 55666654 333323344454322221111111111111112222
Q ss_pred C-CCCCCCCCCcccccCCCCCcchhHHHHHHHhhhhccCChhhh
Q 001331 664 S-RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 706 (1099)
Q Consensus 664 ~-~~p~~~~~p~Ct~~~~P~~~~Hci~wAr~~F~~lF~~~~~~~ 706 (1099)
+ -+|+ .-.|...+-.-+.....++++++.++...+++.|-.+
T Consensus 143 hf~~P~-~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v 185 (286)
T PRK07819 143 HFFNPV-PVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRA 185 (286)
T ss_pred ecCCCc-ccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEe
Confidence 2 1232 2345667777888899999999998887777766544
No 139
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.28 E-value=0.079 Score=59.97 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=31.6
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEec
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 547 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD 547 (1099)
+.+++|+|+|+||.|..++..|+..|+ .+|+|++
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~-----~~i~I~n 156 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGV-----TDITVIN 156 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCC-----CeEEEEe
Confidence 567899999999999999999999999 8999985
No 140
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=94.24 E-value=0.16 Score=54.19 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=67.9
Q ss_pred hhccCHHHHHHhhcCeEEEEcCChHHHH-HHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHH
Q 001331 101 LAVYGRETMRRLFASNILVSGMQGLGAE-IAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQE 179 (1099)
Q Consensus 101 i~l~G~e~q~kL~~s~VlIiG~gglG~E-iaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~e 179 (1099)
+..=+.+++++|++++|.|+|.|+.|++ ++..|..+||+.+.
T Consensus 92 ~g~~~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------------------------------------- 134 (193)
T TIGR03882 92 LGVDPAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP------------------------------------- 134 (193)
T ss_pred cCCCHHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC-------------------------------------
Confidence 4445778899999999999999999988 99999999997654
Q ss_pred hCCCcEEEEEecCCChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEE
Q 001331 180 LNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 242 (1099)
Q Consensus 180 LNp~V~v~~~~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~v 242 (1099)
++ ...++|++.+........+|+...+.+ +|++.+...|..+.+
T Consensus 135 --------------~~---a~l~vVl~~Dyl~p~L~~~n~~~l~~~--~~~l~v~~~~~~~~~ 178 (193)
T TIGR03882 135 --------------SE---ADLTVVLTDDYLDPELAAINQRALAAG--RPWLLVKPGGVQPWI 178 (193)
T ss_pred --------------CC---CCEEEEEeCCCCChHHHHHHHHHHHcC--CceEEEEeCCceEEE
Confidence 00 123455555555667778999999999 999999988877664
No 141
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=94.21 E-value=0.16 Score=59.95 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=60.9
Q ss_pred EEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCCC-
Q 001331 117 ILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT- 194 (1099)
Q Consensus 117 VlIiG~gglG~EiaKnLvlaGVg-~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l~- 194 (1099)
|+|+|+|.+|..+++.|+..+-- ++++.|.+. .|++...+.+ ....+....-+++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence 79999999999999999999854 899988532 2444444333 2234444444443
Q ss_pred ----hhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEE
Q 001331 195 ----KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 232 (1099)
Q Consensus 195 ----~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~ 232 (1099)
.++++++|+||.|..+. ....+-+.|.+.+ +.+|+
T Consensus 58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g--~~yvD 96 (386)
T PF03435_consen 58 PESLAELLRGCDVVINCAGPF-FGEPVARACIEAG--VHYVD 96 (386)
T ss_dssp HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT---EEEE
T ss_pred HHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhC--CCeec
Confidence 24688999999998766 6668899999999 98887
No 142
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.18 E-value=0.071 Score=63.53 Aligned_cols=77 Identities=12% Similarity=0.184 Sum_probs=53.9
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
.+.+++|+|+|+||.|..++++|...|+++|+|+..+ ..||+...+.+. .+.+....
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt-------------------~~ra~~La~~~~----~~~~~~~~ 234 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT-------------------IEKAQKITSAFR----NASAHYLS 234 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHhc----CCeEecHH
Confidence 3678999999999999999999999999999998642 125555544432 12211111
Q ss_pred cCCChhhccCCcEEEEecCCHH
Q 001331 191 SKLTKEQLSDFQAVVFTDISLD 212 (1099)
Q Consensus 191 ~~l~~~~l~~~dvVV~~~~~~~ 212 (1099)
+ ..+.+.++|+||.|+....
T Consensus 235 -~-l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 235 -E-LPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred -H-HHHHhccCCEEEECcCCCC
Confidence 1 1356889999999987533
No 143
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.11 E-value=0.068 Score=57.78 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=68.4
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc-cccccCCcccccccCcccchHHHHHHHHHHhhCCCC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV-IEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 586 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~-Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~ 586 (1099)
.|.+++|+|||.|.+|..=++.|+.+|. +++|+-++. -+..++ + +.+
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga------~v~Vvs~~~~~el~~~----------------------~-~~~--- 56 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA------DVTVVSPEFEPELKAL----------------------I-EEG--- 56 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC------EEEEEcCCccHHHHHH----------------------H-Hhc---
Confidence 4678899999999999999999999996 899886554 111111 1 111
Q ss_pred eEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEE
Q 001331 587 NIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLE 640 (1099)
Q Consensus 587 ~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~ 640 (1099)
.|..+... |+.+.+..+++||-|+||.+.-..+.+.|..+++|+-.
T Consensus 57 ~i~~~~~~--------~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 57 KIKWIERE--------FDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNV 102 (210)
T ss_pred Ccchhhcc--------cChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceec
Confidence 12322222 33455667999999999999999999999999998763
No 144
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=93.98 E-value=0.037 Score=50.92 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=31.0
Q ss_pred ccccCchhhhhhhhhhHHHHHhhcCCcccc-ceeeeeccCCC
Q 001331 436 RAVLNPMAAMFGGIVGQEVVKACSGKFHPL-YQFFYFDSVES 476 (1099)
Q Consensus 436 ~~el~pvaA~iGGiaAQEVIKaiTgkf~PI-~q~~~fD~~e~ 476 (1099)
.+.|.|+.+++|.+.|+|+||.|+|.-.|+ ..+++||+.+.
T Consensus 23 ~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~ 64 (84)
T PF05237_consen 23 AGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNM 64 (84)
T ss_dssp S-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCC
Confidence 478999999999999999999999987775 46888998754
No 145
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=93.90 E-value=0.12 Score=51.02 Aligned_cols=99 Identities=24% Similarity=0.291 Sum_probs=59.9
Q ss_pred cEEEEcC-CcchHHHHHHHHH-cCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEE
Q 001331 513 KVFIVGS-GALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 590 (1099)
Q Consensus 513 ~v~vvG~-GglG~evlk~La~-~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 590 (1099)
||.|+|+ |-.|.++++.+.. .|+ --.-.+|... |. +-..|+|. +..+. ...+.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~-----~lv~~v~~~~---~~------~~g~d~g~---------~~~~~-~~~~~- 56 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGF-----ELVGAVDRKP---SA------KVGKDVGE---------LAGIG-PLGVP- 56 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTE-----EEEEEEETTT---ST------TTTSBCHH---------HCTSS-T-SSB-
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCc-----EEEEEEecCC---cc------cccchhhh---------hhCcC-Ccccc-
Confidence 7999999 9999999999998 565 2234444322 00 11234441 11111 11111
Q ss_pred EecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCccc
Q 001331 591 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAK 647 (1099)
Q Consensus 591 ~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~ 647 (1099)
+..+. ++.+..+|+||+++ ++++-...-++|.++++|+| .||+|+.
T Consensus 57 ----v~~~l-----~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~V-iGTTG~~ 102 (124)
T PF01113_consen 57 ----VTDDL-----EELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLV-IGTTGFS 102 (124)
T ss_dssp ----EBS-H-----HHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEE-EE-SSSH
T ss_pred ----cchhH-----HHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEE-EECCCCC
Confidence 11111 34566799999999 88888888889999999999 7888874
No 146
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.86 E-value=0.17 Score=58.04 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=51.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhC----CCcEEEEE
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN----NAVVLSTL 189 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg-~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLN----p~V~v~~~ 189 (1099)
.+|.|+|+|++|..+|..|+..|+. +|.|+|.+. .+++..+..|.... ..+.+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~-------------------~~~~~~a~dL~~~~~~~~~~~~i~~- 60 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE-------------------EKAEGEALDLEDALAFLPSPVKIKA- 60 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc-------------------chhhHhHhhHHHHhhccCCCeEEEc-
Confidence 3799999999999999999999985 899999532 24555556555443 2233332
Q ss_pred ecCCChhhccCCcEEEEecC
Q 001331 190 TSKLTKEQLSDFQAVVFTDI 209 (1099)
Q Consensus 190 ~~~l~~~~l~~~dvVV~~~~ 209 (1099)
.+.+.+.++|+||.|..
T Consensus 61 ---~~~~~l~~aDIVIitag 77 (306)
T cd05291 61 ---GDYSDCKDADIVVITAG 77 (306)
T ss_pred ---CCHHHhCCCCEEEEccC
Confidence 23345789999999865
No 147
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.84 E-value=0.14 Score=53.08 Aligned_cols=111 Identities=21% Similarity=0.258 Sum_probs=63.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCC-
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL- 193 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l- 193 (1099)
.+|.+||+|-.|..+|+||..+|. .++++|.+.-....+... |-..+....+.+++. ++-+......-
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~--------g~~~~~s~~e~~~~~--dvvi~~v~~~~~ 70 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA--------GAEVADSPAEAAEQA--DVVILCVPDDDA 70 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT--------TEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh--------hhhhhhhhhhHhhcc--cceEeecccchh
Confidence 479999999999999999999998 789998543221111111 100111111112111 44444433210
Q ss_pred Chh------h---ccCCcEEEEec-CCHHHHHHHHHHHHhcCCCceeEEEeecce
Q 001331 194 TKE------Q---LSDFQAVVFTD-ISLDKAIEFDDFCHNHQPAISFIKAEVRGL 238 (1099)
Q Consensus 194 ~~~------~---l~~~dvVV~~~-~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 238 (1099)
.++ . +..=.+||++. .+.+...++.+.+.+++ +.||.+.+.|-
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g--~~~vdapV~Gg 123 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG--VRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT--EEEEEEEEESH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc--ceeeeeeeecc
Confidence 011 1 22335666654 57888889999999999 99999988774
No 148
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=93.73 E-value=0.15 Score=57.55 Aligned_cols=36 Identities=22% Similarity=0.493 Sum_probs=32.4
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
.+.+++|+|+|+||+|..+++.|+..|+ .+|+|++.
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~-----~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGV-----AEITIVNR 155 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEeC
Confidence 3677899999999999999999999998 79999864
No 149
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.73 E-value=0.13 Score=61.85 Aligned_cols=36 Identities=33% Similarity=0.582 Sum_probs=32.6
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~ 550 (1099)
+.+++|+|+|+|++|.++++.|+..|. +++++|.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~------~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA------KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCCc
Confidence 567899999999999999999999998 899998654
No 150
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.58 E-value=0.19 Score=57.94 Aligned_cols=171 Identities=15% Similarity=0.109 Sum_probs=90.0
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEE
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 591 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 591 (1099)
++|.|||+|-+|+.++..|+..|. .++++|.+.=....+ +.....+.+.+.+..+. -...
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~------~V~l~D~~~~~~~~~------------~~~i~~~~~~~~~~~~~--~~~~ 67 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL------DVVAWDPAPGAEAAL------------RANVANAWPALERQGLA--PGAS 67 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCHHHHHHH------------HHHHHHHHHHHHHcCCC--hhhH
Confidence 479999999999999999999998 899999654211110 00111111111111110 0000
Q ss_pred ecccCcccccccchhhhcCCCEEEEccC-chHHHHHHHhhcccccc--cEEEcCcCcccce-eEEEeCcccccCCCCCCC
Q 001331 592 QNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGASRDP 667 (1099)
Q Consensus 592 ~~~v~~~~e~~~~~~~~~~~DvVi~alD-n~~ar~~i~~~c~~~~~--Pli~sgt~G~~G~-~~v~ip~~t~cy~c~~~p 667 (1099)
..++...+ + + .+.++++|+|+.|+- +.+.++.+-+.....-. .+|.+.|.+.... ..-...+-..|...+.-.
T Consensus 68 ~~~i~~~~-~-l-~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~Hffn 144 (321)
T PRK07066 68 PARLRFVA-T-I-EACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFN 144 (321)
T ss_pred HhhceecC-C-H-HHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCC
Confidence 11111111 1 1 245689999999976 55666544333322222 2777777664321 111111112222222222
Q ss_pred CCCCCCcccccCCCCCcchhHHHHHHHhhhhccCChhhh
Q 001331 668 PEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 706 (1099)
Q Consensus 668 ~~~~~p~Ct~~~~P~~~~Hci~wAr~~F~~lF~~~~~~~ 706 (1099)
|..-.|+.-+-.-|..-.-++.+++++++. .++.|-.+
T Consensus 145 P~~~~pLVEVv~g~~T~~e~~~~~~~f~~~-lGk~pV~v 182 (321)
T PRK07066 145 PVYLLPLVEVLGGERTAPEAVDAAMGIYRA-LGMRPLHV 182 (321)
T ss_pred ccccCceEEEeCCCCCCHHHHHHHHHHHHH-cCCEeEec
Confidence 223455555556677788899999998876 66655433
No 151
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=93.52 E-value=0.098 Score=61.72 Aligned_cols=75 Identities=27% Similarity=0.370 Sum_probs=56.4
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
.|.+++|+|||+|-.|.-++++|+..|+ .+|+|+ ||++ -||.-+|+.+. ..
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~-----~~i~Ia----------NRT~---------erA~~La~~~~-----~~ 225 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGV-----KKITIA----------NRTL---------ERAEELAKKLG-----AE 225 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCC-----CEEEEE----------cCCH---------HHHHHHHHHhC-----Ce
Confidence 3888999999999999999999999999 899984 7764 36666666653 22
Q ss_pred EEEEecccCcccccccchhhhcCCCEEEEccCch
Q 001331 588 IEALQNRVGPETENVFDDTFWENITCVINALDNV 621 (1099)
Q Consensus 588 i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~ 621 (1099)
+..+. ++ ..++..+|+||.|+..+
T Consensus 226 ~~~l~--------el--~~~l~~~DvVissTsa~ 249 (414)
T COG0373 226 AVALE--------EL--LEALAEADVVISSTSAP 249 (414)
T ss_pred eecHH--------HH--HHhhhhCCEEEEecCCC
Confidence 22221 11 36788999999998644
No 152
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.49 E-value=0.26 Score=55.96 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=41.8
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHH
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQE 179 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~e 179 (1099)
+++++|+|+|+||.+..|+-.|+..|+++|+|++.+.- ...||+.+++++..
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~----------------~~~ka~~la~~~~~ 173 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE----------------FFDKALAFAQRVNE 173 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc----------------HHHHHHHHHHHhhh
Confidence 56789999999999999999999999999999985210 13477777777644
No 153
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=93.47 E-value=0.11 Score=61.85 Aligned_cols=75 Identities=17% Similarity=0.325 Sum_probs=51.6
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
.+.+++|+|||+|+.|..++++|+..|+ .+|+|+. |. ..|++.+++.+ +...
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~-----~~I~V~n----------Rt---------~~ra~~La~~~----~~~~ 229 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAP-----KQIMLAN----------RT---------IEKAQKITSAF----RNAS 229 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEC----------CC---------HHHHHHHHHHh----cCCe
Confidence 4677899999999999999999999999 7888863 32 12555555443 1111
Q ss_pred EEEEecccCcccccccchhhhcCCCEEEEccCc
Q 001331 588 IEALQNRVGPETENVFDDTFWENITCVINALDN 620 (1099)
Q Consensus 588 i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn 620 (1099)
+..+ +.+ .+.+.++|+||+|+-.
T Consensus 230 ~~~~--------~~l--~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 230 AHYL--------SEL--PQLIKKADIIIAAVNV 252 (414)
T ss_pred EecH--------HHH--HHHhccCCEEEECcCC
Confidence 1111 111 3557899999999864
No 154
>PRK04148 hypothetical protein; Provisional
Probab=93.35 E-value=0.66 Score=46.59 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=66.5
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecC
Q 001331 113 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 192 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~ 192 (1099)
++.+|++||+| .|..+|..|...|. .++.+|-+.- .++. .++. .+++...+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~-------------------aV~~----a~~~----~~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK-------------------AVEK----AKKL----GLNAFVDD 66 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH-------------------HHHH----HHHh----CCeEEECc
Confidence 34689999999 99999999999996 8888885321 2222 2222 13444444
Q ss_pred C---ChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEE
Q 001331 193 L---TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 232 (1099)
Q Consensus 193 l---~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~ 232 (1099)
+ +.++..++|+|-.+..+.+...-|-+++++.+ .+++.
T Consensus 67 lf~p~~~~y~~a~liysirpp~el~~~~~~la~~~~--~~~~i 107 (134)
T PRK04148 67 LFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKIN--VPLII 107 (134)
T ss_pred CCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcC--CCEEE
Confidence 3 44678899999999999999999999999999 77664
No 155
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.33 E-value=0.15 Score=51.83 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=31.0
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
+.+++|+|+|+|++|..+++.|+..|. ..++++|.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~-----~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGA-----AKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcCC
Confidence 457899999999999999999999985 688888743
No 156
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.31 E-value=0.21 Score=56.71 Aligned_cols=83 Identities=10% Similarity=0.123 Sum_probs=53.2
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeE
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 588 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i 588 (1099)
+.+++++|+|+||.+..++-.|+..|+ .+|+|++.+. -...|++.+++.+....+ ..+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~-----~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~ 179 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGL-----KEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVV 179 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceE
Confidence 567799999999999999999999999 8999986321 023577777776644332 222
Q ss_pred EEEecccCcccccccchhhhcCCCEEEEcc
Q 001331 589 EALQNRVGPETENVFDDTFWENITCVINAL 618 (1099)
Q Consensus 589 ~~~~~~v~~~~e~~~~~~~~~~~DvVi~al 618 (1099)
.... ... .. .+ .+-..++|+||||+
T Consensus 180 ~~~~--~~~-~~-~l-~~~~~~aDivINaT 204 (288)
T PRK12749 180 TVTD--LAD-QQ-AF-AEALASADILTNGT 204 (288)
T ss_pred EEec--hhh-hh-hh-hhhcccCCEEEECC
Confidence 2221 110 00 01 11235789999986
No 157
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.30 E-value=0.28 Score=53.68 Aligned_cols=96 Identities=18% Similarity=0.276 Sum_probs=64.6
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEE
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 591 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 591 (1099)
++++|+|+|-+|..+++.|+..|- .+++||.|.- .+.+.+.. .....++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~------~Vv~Id~d~~----------------------~~~~~~~~---~~~~~~v 49 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH------NVVLIDRDEE----------------------RVEEFLAD---ELDTHVV 49 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC------ceEEEEcCHH----------------------HHHHHhhh---hcceEEE
Confidence 479999999999999999999996 8899987642 11221211 1223333
Q ss_pred ecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhccc-ccccEEE
Q 001331 592 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY-FQKPLLE 640 (1099)
Q Consensus 592 ~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~-~~~Pli~ 640 (1099)
....+. +..+-..-..++|+++.++++-.....+..++.+ +++|-+.
T Consensus 50 ~gd~t~--~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~vi 97 (225)
T COG0569 50 IGDATD--EDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVI 97 (225)
T ss_pred EecCCC--HHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEE
Confidence 333222 2223233467899999999998777777777665 7888774
No 158
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.28 E-value=0.089 Score=47.56 Aligned_cols=31 Identities=26% Similarity=0.613 Sum_probs=28.3
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
||+|||+|.+|+|++..|+..|. ++++++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~------~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK------EVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS------EEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc------EEEEEecc
Confidence 68999999999999999999997 88998754
No 159
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.21 E-value=0.22 Score=60.23 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=69.1
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
.|++++|+|||.|.++..=++.|...|. +|+||-++.- + + +.++-..-+
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga------~v~visp~~~------------~-~------------~~~l~~~~~ 57 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA------RLTVNALAFI------------P-Q------------FTAWADAGM 57 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCCCC------------H-H------------HHHHHhCCC
Confidence 4788999999999999999999999996 8999865421 0 0 111111224
Q ss_pred EEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEE
Q 001331 588 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 639 (1099)
Q Consensus 588 i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli 639 (1099)
|+.+...+. ...++++++||.|+|+.+.-..|.+.|...++++-
T Consensus 58 i~~~~~~~~--------~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN 101 (457)
T PRK10637 58 LTLVEGPFD--------ESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCN 101 (457)
T ss_pred EEEEeCCCC--------hHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEE
Confidence 555554432 34568999999999999999999999999888754
No 160
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.16 E-value=0.94 Score=43.57 Aligned_cols=87 Identities=23% Similarity=0.332 Sum_probs=59.7
Q ss_pred EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCCC-h
Q 001331 117 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT-K 195 (1099)
Q Consensus 117 VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l~-~ 195 (1099)
|+|+|+|.+|.++++.|...| ..++++|.+.- + .+.+.+.. +.+..++.+ +
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~-------------------~----~~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE-------------------R----VEELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH-------------------H----HHHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH-------------------H----HHHHHhcc----cccccccchhh
Confidence 789999999999999999955 58999996542 1 23333333 224444433 2
Q ss_pred -----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeE
Q 001331 196 -----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 231 (1099)
Q Consensus 196 -----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI 231 (1099)
..+.+++.||++.++......+...+++.++.++.|
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEE
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEE
Confidence 246688999999888888888889999876544443
No 161
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.16 E-value=0.05 Score=57.39 Aligned_cols=165 Identities=20% Similarity=0.251 Sum_probs=77.6
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCccc---ccccCcccchHHHHHHHHHHhhCCCCeEE
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQF---LFRDWNIGQAKSTVAASAATSINPRLNIE 589 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQf---lf~~~diG~~Ka~vaa~~l~~~np~~~i~ 589 (1099)
+|.|||+|..|..++-.+++.|. +++++|.+.-.....-+.+ |-+..+-|+...+.+...+.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~------ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY------EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS------ 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS------EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE------
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC------cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc------
Confidence 68999999999999999999998 9999998653322211110 00001112222222333332222
Q ss_pred EEecccCcccccccchhhhcCCCEEEEccC-chHHHHH----HHhhcccccccEEEcCcCcccce-eEEEeCcccccCCC
Q 001331 590 ALQNRVGPETENVFDDTFWENITCVINALD-NVNARLY----VDQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTENYGA 663 (1099)
Q Consensus 590 ~~~~~v~~~~e~~~~~~~~~~~DvVi~alD-n~~ar~~----i~~~c~~~~~Pli~sgt~G~~G~-~~v~ip~~t~cy~c 663 (1099)
.. . + + .+. .++|+||.|+- +.+.++. +++.|.. .. ++-+.|.+..-. ....+++-..+.+.
T Consensus 69 ~~-~----d----l-~~~-~~adlViEai~E~l~~K~~~~~~l~~~~~~-~~-ilasnTSsl~i~~la~~~~~p~R~ig~ 135 (180)
T PF02737_consen 69 FT-T----D----L-EEA-VDADLVIEAIPEDLELKQELFAELDEICPP-DT-ILASNTSSLSISELAAALSRPERFIGM 135 (180)
T ss_dssp EE-S----S----G-GGG-CTESEEEE-S-SSHHHHHHHHHHHHCCS-T-TS-EEEE--SSS-HHHHHTTSSTGGGEEEE
T ss_pred cc-c----C----H-HHH-hhhheehhhccccHHHHHHHHHHHHHHhCC-Cc-eEEecCCCCCHHHHHhccCcCceEEEE
Confidence 11 1 1 1 223 38999999985 5566654 4444422 22 333333322100 00000111111111
Q ss_pred CCCCCCCCCCcccccCCCCCcchhHHHHHHHhhhhccCCh
Q 001331 664 SRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP 703 (1099)
Q Consensus 664 ~~~p~~~~~p~Ct~~~~P~~~~Hci~wAr~~F~~lF~~~~ 703 (1099)
+.-.|....|+.-+-..|....-+++|++++++.+ ++.|
T Consensus 136 Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~-gk~p 174 (180)
T PF02737_consen 136 HFFNPPHLMPLVEVVPGPKTSPETVDRVRALLRSL-GKTP 174 (180)
T ss_dssp EE-SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHT-T-EE
T ss_pred ecccccccCceEEEeCCCCCCHHHHHHHHHHHHHC-CCEE
Confidence 11112234566667777888899999999987765 5443
No 162
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=93.12 E-value=0.055 Score=50.21 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=37.0
Q ss_pred CCCCcHHHHHHHHHH-c-CCceeeeecCCceeecCCCcchhccccCcHHHH
Q 001331 1011 KDNPTLRELIQWLKD-K-GLNAYSISCGSCLLFNSMFPRHKERMDKKVVDL 1059 (1099)
Q Consensus 1011 ~~~~TL~~li~~~~~-~-~l~~~~i~~g~~~LY~~~~~~~~~~l~~~l~~l 1059 (1099)
...+||++|++.+-+ + |+..+.|+.|..+||++......++++|+|++|
T Consensus 6 ~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~el 56 (87)
T PF14732_consen 6 TKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSEL 56 (87)
T ss_dssp TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGG
T ss_pred chhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHc
Confidence 347999999998744 5 999999999999999977544578999999999
No 163
>PLN00203 glutamyl-tRNA reductase
Probab=93.01 E-value=0.19 Score=61.49 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=52.8
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
|.+.+|+|||+|++|..++++|...|+.+|++++.+ ..|++...+.+ +.+.+.+...
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~~~ 320 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYKPL 320 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEeecH
Confidence 557999999999999999999999999999998743 12444444333 3333333221
Q ss_pred CCChhhccCCcEEEEecCC
Q 001331 192 KLTKEQLSDFQAVVFTDIS 210 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~~~ 210 (1099)
.-..+.+.++|+||.|+..
T Consensus 321 ~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 321 DEMLACAAEADVVFTSTSS 339 (519)
T ss_pred hhHHHHHhcCCEEEEccCC
Confidence 1123567899999998753
No 164
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.97 E-value=0.035 Score=58.36 Aligned_cols=93 Identities=17% Similarity=0.297 Sum_probs=55.3
Q ss_pred HHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCC
Q 001331 506 QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR 585 (1099)
Q Consensus 506 q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~ 585 (1099)
...|.+++|.|+|+|.||.++++.|...|+ +++.+|...-....... +.+... -+.+ +.+.
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~~~~~~~~~~~-~~~~~~--------~l~e----ll~~ 91 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGM------RVIGYDRSPKPEEGADE-FGVEYV--------SLDE----LLAQ 91 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-------EEEEEESSCHHHHHHHH-TTEEES--------SHHH----HHHH
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCc------eeEEecccCChhhhccc-ccceee--------ehhh----hcch
Confidence 347889999999999999999999999998 89998865542220000 000000 0111 1122
Q ss_pred CeEEEEecccCcccccccchhhhcCCC---EEEEc
Q 001331 586 LNIEALQNRVGPETENVFDDTFWENIT---CVINA 617 (1099)
Q Consensus 586 ~~i~~~~~~v~~~~e~~~~~~~~~~~D---vVi~a 617 (1099)
..|.......++++..+++.++++... ++||.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEES
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEec
Confidence 455666666666666777766665553 55554
No 165
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.94 E-value=0.44 Score=53.81 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=29.6
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~ 550 (1099)
.+|.|||+|-+|+.++..|+..|. .++++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~------~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY------DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC------ceEEEeCCH
Confidence 479999999999999999999997 889998653
No 166
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=92.92 E-value=0.18 Score=54.46 Aligned_cols=84 Identities=26% Similarity=0.393 Sum_probs=59.7
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 509 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 509 L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
+.+++++++| |||||-++.|.|+.-|+ ..+.|.| ..| | -.+...|+++||..+
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgi-----k~~~i~~--~~E--n-----------------~~a~akL~ai~p~~~ 56 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGI-----KVLVIDD--SEE--N-----------------PEAIAKLQAINPSVS 56 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCc-----hheeehh--hhh--C-----------------HHHHHHHhccCCCce
Confidence 4577888885 99999999999999999 4554443 221 1 225667899999999
Q ss_pred EEEEecccCcc--cccccch--hhhcCCCEEEEcc
Q 001331 588 IEALQNRVGPE--TENVFDD--TFWENITCVINAL 618 (1099)
Q Consensus 588 i~~~~~~v~~~--~e~~~~~--~~~~~~DvVi~al 618 (1099)
+..+...+... .+..|+. .-+...||+||.-
T Consensus 57 v~F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINgA 91 (261)
T KOG4169|consen 57 VIFIKCDVTNRGDLEAAFDKILATFGTIDILINGA 91 (261)
T ss_pred EEEEEeccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence 99998888752 2222321 2256789999875
No 167
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.63 E-value=0.17 Score=52.78 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=29.9
Q ss_pred HHhcCcEEEEcCCcc-hHHHHHHHHHcCCCCCCCccEEEec
Q 001331 508 KLEDAKVFIVGSGAL-GCEFLKNVALMGVSCGNQGKLTITD 547 (1099)
Q Consensus 508 ~L~~~~v~vvG~Ggl-G~evlk~La~~Gv~~~~~g~i~ivD 547 (1099)
.|.+++|+|||+|.+ |..++++|...|+ ++++++
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~------~V~v~~ 75 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA------TVTVCH 75 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC------EEEEEE
Confidence 478899999999985 8889999999998 588876
No 168
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=92.60 E-value=0.83 Score=52.24 Aligned_cols=71 Identities=23% Similarity=0.245 Sum_probs=52.3
Q ss_pred EEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCC---cEEEEEecC
Q 001331 117 ILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA---VVLSTLTSK 192 (1099)
Q Consensus 117 VlIiG~gglG~EiaKnLvlaGV-g~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~---V~v~~~~~~ 192 (1099)
|.|||+|++|+.+|-.|+..|+ .+|+|+|.+ +.|++..+..|....+. +++... .
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~~-~- 59 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVRG-G- 59 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEEC-C-
Confidence 5799999999999999999997 569999952 23666666677766553 344321 2
Q ss_pred CChhhccCCcEEEEecC
Q 001331 193 LTKEQLSDFQAVVFTDI 209 (1099)
Q Consensus 193 l~~~~l~~~dvVV~~~~ 209 (1099)
+.+.+.+.|+||+|..
T Consensus 60 -~~~~l~~aDiVIitag 75 (300)
T cd00300 60 -DYADAADADIVVITAG 75 (300)
T ss_pred -CHHHhCCCCEEEEcCC
Confidence 2457889999998865
No 169
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=92.58 E-value=0.37 Score=55.36 Aligned_cols=83 Identities=23% Similarity=0.229 Sum_probs=55.8
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
+.+.+|+|+|+|.+|..++++|...|+..|+++|.+. .|++..++.+. . .+... .
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g----~-~~~~~-~ 230 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELG----G-NAVPL-D 230 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcC----C-eEEeH-H
Confidence 6789999999999999999999999999999998532 24444444431 1 11111 1
Q ss_pred CCChhhccCCcEEEEecCCHHHHHHHHHH
Q 001331 192 KLTKEQLSDFQAVVFTDISLDKAIEFDDF 220 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~~~~~~~~~ln~~ 220 (1099)
+ ..+.+.++|+||.|+.+......+.+.
T Consensus 231 ~-~~~~l~~aDvVi~at~~~~~~~~~~~~ 258 (311)
T cd05213 231 E-LLELLNEADVVISATGAPHYAKIVERA 258 (311)
T ss_pred H-HHHHHhcCCEEEECCCCCchHHHHHHH
Confidence 1 124567899999998755543333333
No 170
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=92.57 E-value=0.41 Score=48.54 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=31.6
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
+...+|+|+|+|++|..+++.|...|...++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 56789999999999999999999998778999885
No 171
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.43 E-value=0.4 Score=55.23 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=54.0
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCc-EEEEEe
Q 001331 113 FASNILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAV-VLSTLT 190 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~EiaKnLvlaGVg-~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V-~v~~~~ 190 (1099)
+..+|.|||+|.+|+.+|-.|+..|+- +|.|+|- -..+++..+.-|+...|.. .+....
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~ 65 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYA 65 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEe
Confidence 356999999999999999999999985 7999984 1335556666666655421 233333
Q ss_pred cCCChhhccCCcEEEEecC
Q 001331 191 SKLTKEQLSDFQAVVFTDI 209 (1099)
Q Consensus 191 ~~l~~~~l~~~dvVV~~~~ 209 (1099)
. +.+-+++.|+||.+..
T Consensus 66 ~--~~~~~~~adivIitag 82 (315)
T PRK00066 66 G--DYSDCKDADLVVITAG 82 (315)
T ss_pred C--CHHHhCCCCEEEEecC
Confidence 3 2345789999998764
No 172
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.40 E-value=0.86 Score=49.89 Aligned_cols=105 Identities=18% Similarity=0.210 Sum_probs=66.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCC-
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL- 193 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l- 193 (1099)
.+++|+|+|-+|..+|++|+..|- .++++|.+.- + +.+.++ ......++..+-
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~-------------------~---~~~~~~---~~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEE-------------------R---VEEFLA---DELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHH-------------------H---HHHHhh---hhcceEEEEecCC
Confidence 479999999999999999999997 6677765331 1 111122 111223332222
Q ss_pred Ch-----hhccCCcEEEEecCCHHHHHHHHHHHHh-cCCCceeEEEeecce-eEEEEEEcC
Q 001331 194 TK-----EQLSDFQAVVFTDISLDKAIEFDDFCHN-HQPAISFIKAEVRGL-FGSVFCDFG 247 (1099)
Q Consensus 194 ~~-----~~l~~~dvVV~~~~~~~~~~~ln~~c~~-~~~~ipfI~~~~~G~-~G~vf~d~g 247 (1099)
++ --+.++|++|.++.+......+..++.+ +| +|-+.+.+..- +..++...|
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~g--v~~viar~~~~~~~~~~~~~g 113 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFG--VPRVIARARNPEHEKVLEKLG 113 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcC--CCcEEEEecCHHHHHHHHHcC
Confidence 22 2367899999988876666666666655 78 88887776543 445554444
No 173
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.26 E-value=0.64 Score=53.24 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=29.3
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 114 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
..+|+|+|+|++|+.++-.|..+|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 3579999999999999999999996 79998863
No 174
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.12 E-value=0.12 Score=58.45 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=29.8
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~ 550 (1099)
++|.|||+|.+|+.++.+|+..|. +++++|.|.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~------~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF------QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC------cEEEEeCCH
Confidence 479999999999999999999997 899998764
No 175
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=92.09 E-value=0.37 Score=57.71 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=33.4
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
.+.+.+|+|+|+|.+|..+++.|...|+.+|+++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 377899999999999999999999999999999875
No 176
>PRK04148 hypothetical protein; Provisional
Probab=92.00 E-value=0.9 Score=45.62 Aligned_cols=91 Identities=12% Similarity=0.196 Sum_probs=66.8
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEE
Q 001331 510 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 589 (1099)
Q Consensus 510 ~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~ 589 (1099)
++.+|++||+| -|..++..|+.+|. .++.+|-+.- . .+.+++. .+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~------~ViaIDi~~~-------------------a----V~~a~~~----~~~ 61 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF------DVIVIDINEK-------------------A----VEKAKKL----GLN 61 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC------EEEEEECCHH-------------------H----HHHHHHh----CCe
Confidence 34689999999 99999999999997 8999984431 1 2222222 123
Q ss_pred EEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEE
Q 001331 590 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 639 (1099)
Q Consensus 590 ~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli 639 (1099)
+....+...+ .++++++|+|...-=.++....+-+.+.+.+.+++
T Consensus 62 ~v~dDlf~p~-----~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~ 106 (134)
T PRK04148 62 AFVDDLFNPN-----LEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLI 106 (134)
T ss_pred EEECcCCCCC-----HHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEE
Confidence 4443333222 46789999999998888888999999999999988
No 177
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=91.98 E-value=0.4 Score=51.85 Aligned_cols=62 Identities=29% Similarity=0.465 Sum_probs=50.1
Q ss_pred hhcCeEEEE-cCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 112 LFASNILVS-GMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 112 L~~s~VlIi-G~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
+.+++|+++ |+||+|-+.+|.|...|++.+.|.|.. +| -.+..+|++.||.+++....
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~----En-----------------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSE----EN-----------------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhh----hC-----------------HHHHHHHhccCCCceEEEEE
Confidence 457788888 599999999999999999888887631 11 24567899999999999988
Q ss_pred cCCC
Q 001331 191 SKLT 194 (1099)
Q Consensus 191 ~~l~ 194 (1099)
.+++
T Consensus 62 ~DVt 65 (261)
T KOG4169|consen 62 CDVT 65 (261)
T ss_pred eccc
Confidence 7765
No 178
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=91.91 E-value=0.38 Score=54.35 Aligned_cols=74 Identities=22% Similarity=0.313 Sum_probs=52.1
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEE
Q 001331 510 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 589 (1099)
Q Consensus 510 ~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~ 589 (1099)
..++++|+|+||.+-.++..|+..|+ .+|+|+. |- ..|++-+++.+.+..+.+...
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~-----~~i~V~N----------Rt---------~~ra~~La~~~~~~~~~~~~~ 180 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGA-----KRITVVN----------RT---------RERAEELADLFGELGAAVEAA 180 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEEe----------CC---------HHHHHHHHHHhhhcccccccc
Confidence 46889999999999999999999999 7999874 32 357777777777666522111
Q ss_pred EEecccCcccccccchhhhcCCCEEEEcc
Q 001331 590 ALQNRVGPETENVFDDTFWENITCVINAL 618 (1099)
Q Consensus 590 ~~~~~v~~~~e~~~~~~~~~~~DvVi~al 618 (1099)
.. .+.+ -.+.+|+||||+
T Consensus 181 ~~-----~~~~------~~~~~dliINaT 198 (283)
T COG0169 181 AL-----ADLE------GLEEADLLINAT 198 (283)
T ss_pred cc-----cccc------cccccCEEEECC
Confidence 11 1111 112689999997
No 179
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=91.76 E-value=0.43 Score=46.79 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=61.2
Q ss_pred cEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCc-ccchHHHHHHHHHHhhCCCCeEEE
Q 001331 513 KVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWN-IGQAKSTVAASAATSINPRLNIEA 590 (1099)
Q Consensus 513 ~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~d-iG~~Ka~vaa~~l~~~np~~~i~~ 590 (1099)
||.||| .|.+|.++++.|+..-- -.++.+ +..+. .|+.=+.... .......+..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~-----~e~~~~---------------~~~~~~~g~~~~~~~~----~~~~~~~~~~ 56 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD-----FELVAL---------------VSSSRSAGKPLSEVFP----HPKGFEDLSV 56 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST-----EEEEEE---------------EESTTTTTSBHHHTTG----GGTTTEEEBE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC-----ccEEEe---------------eeeccccCCeeehhcc----ccccccceeE
Confidence 699999 99999999999998322 232221 22222 4433111111 0010111111
Q ss_pred EecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCc-CcccceeEEEeCc
Q 001331 591 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGT-LGAKCNTQMVIPH 656 (1099)
Q Consensus 591 ~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt-~G~~G~~~v~ip~ 656 (1099)
.. .+.+-+.+.|+||.|+++-.++.+.... ...+..+||.+. .-+...+...+|.
T Consensus 57 ~~----------~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~~~R~~~~~~~~~pe 112 (121)
T PF01118_consen 57 ED----------ADPEELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSGDFRLDDDVPYGLPE 112 (121)
T ss_dssp EE----------TSGHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSSTTTTSTTSEEE-HH
T ss_pred ee----------cchhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCHHHhCCCCCCEEeCC
Confidence 11 1234458999999999998888887766 778889997544 3343344444443
No 180
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.63 E-value=0.66 Score=53.09 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=29.2
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~ 550 (1099)
++|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~------~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL------QVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC------eEEEEECCH
Confidence 479999999999999999999997 788888543
No 181
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.59 E-value=0.67 Score=53.19 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=51.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCC---CcEEEEEec
Q 001331 116 NILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNN---AVVLSTLTS 191 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGV-g~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp---~V~v~~~~~ 191 (1099)
+|.|||+|.+|+.+|-.|+..|+ +.+.|+|- -+.|++.-+.-|+...+ ...+.....
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~~~ 61 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIRAG 61 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEEEC
Confidence 68999999999999999999998 67999984 13355555555555433 112333333
Q ss_pred CCChhhccCCcEEEEecC
Q 001331 192 KLTKEQLSDFQAVVFTDI 209 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~~ 209 (1099)
+.+.+.+.|+||.|..
T Consensus 62 --~y~~~~~aDivvitaG 77 (307)
T cd05290 62 --DYDDCADADIIVITAG 77 (307)
T ss_pred --CHHHhCCCCEEEECCC
Confidence 3467889999998754
No 182
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.55 E-value=0.21 Score=54.72 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=35.4
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCc
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLILAGVK--SVTLHDEGT 148 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvlaGVg--~itlvD~d~ 148 (1099)
.+++.+|+|+|+||.|..|++.|...|++ +|+|+|.+-
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 57889999999999999999999999999 999999863
No 183
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.54 E-value=0.16 Score=55.71 Aligned_cols=37 Identities=27% Similarity=0.522 Sum_probs=34.1
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCc--cEEEecCC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQG--KLTITDDD 549 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g--~i~ivD~D 549 (1099)
.+.+.+|+|+|+|+.|+.+++.|+..|+ . +|+|+|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~-----~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGA-----KPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCc-----CcceEEEEeCC
Confidence 4778899999999999999999999999 7 99999976
No 184
>PLN02602 lactate dehydrogenase
Probab=91.35 E-value=0.57 Score=54.70 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=51.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCC---CcEEEEEe
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNN---AVVLSTLT 190 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGV-g~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp---~V~v~~~~ 190 (1099)
.+|.|||+|.+|+.+|-.|+..|+ .+|.|+|-. +.+++..+.-|+...+ .++|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~-------------------~~~~~g~a~DL~~~~~~~~~~~i~~~- 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVN-------------------PDKLRGEMLDLQHAAAFLPRTKILAS- 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------CchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence 699999999999999999999998 579999852 2244444444544333 3444431
Q ss_pred cCCChhhccCCcEEEEecC
Q 001331 191 SKLTKEQLSDFQAVVFTDI 209 (1099)
Q Consensus 191 ~~l~~~~l~~~dvVV~~~~ 209 (1099)
-+.+.+++.|+||++..
T Consensus 98 --~dy~~~~daDiVVitAG 114 (350)
T PLN02602 98 --TDYAVTAGSDLCIVTAG 114 (350)
T ss_pred --CCHHHhCCCCEEEECCC
Confidence 13345889999999854
No 185
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=91.28 E-value=0.46 Score=54.58 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=54.3
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeE
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 588 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i 588 (1099)
+.+.+|+|+|+|.+|..+++.|...|. .+++++|.+. .|+..+++.+ . . .+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-----~~V~v~~r~~-------------------~ra~~la~~~---g-~-~~ 226 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV-----AEITIANRTY-------------------ERAEELAKEL---G-G-NA 226 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC-----CEEEEEeCCH-------------------HHHHHHHHHc---C-C-eE
Confidence 678999999999999999999999888 7899887432 2333333332 1 1 11
Q ss_pred EEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHH
Q 001331 589 EALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVD 628 (1099)
Q Consensus 589 ~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~ 628 (1099)
..+ ++. .+.+..+|+||.|+-....+..+.
T Consensus 227 ~~~--------~~~--~~~l~~aDvVi~at~~~~~~~~~~ 256 (311)
T cd05213 227 VPL--------DEL--LELLNEADVVISATGAPHYAKIVE 256 (311)
T ss_pred EeH--------HHH--HHHHhcCCEEEECCCCCchHHHHH
Confidence 111 011 234578999999999877633333
No 186
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=91.25 E-value=0.53 Score=61.82 Aligned_cols=104 Identities=15% Similarity=0.215 Sum_probs=63.9
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHcCCCC-----CCC---ccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHh
Q 001331 510 EDAKVFIVGSGALGCEFLKNVALMGVSC-----GNQ---GKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATS 581 (1099)
Q Consensus 510 ~~~~v~vvG~GglG~evlk~La~~Gv~~-----~~~---g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~ 581 (1099)
..++|+|+|||.+|..+++.|++.+-.. +.+ -.++|.|.+ ..+++.+++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~---- 624 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVE---- 624 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHH----
Confidence 4669999999999999999999864210 000 125555533 223333333
Q ss_pred hCCCCeEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcC
Q 001331 582 INPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 642 (1099)
Q Consensus 582 ~np~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sg 642 (1099)
..|+++ +....+.+ .+.+ .+++++.|+||+|+-. .....+...|.++++++++..
T Consensus 625 ~~~~~~--~v~lDv~D-~e~L--~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 625 GIENAE--AVQLDVSD-SESL--LKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred hcCCCc--eEEeecCC-HHHH--HHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECc
Confidence 234432 22222322 1222 2445789999999976 345678889999999998654
No 187
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.10 E-value=0.65 Score=53.41 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=51.8
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCC---CcEEEEE
Q 001331 114 ASNILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNN---AVVLSTL 189 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLvlaGVg-~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp---~V~v~~~ 189 (1099)
..+|.|||+|.+|+.+|-.|+..|+. +|.|+|.. +.+++..+.-|+...| ...|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence 45899999999999999999999985 69999852 1245555555555543 2344432
Q ss_pred ecCCChhhccCCcEEEEecC
Q 001331 190 TSKLTKEQLSDFQAVVFTDI 209 (1099)
Q Consensus 190 ~~~l~~~~l~~~dvVV~~~~ 209 (1099)
. +.+.+.+.|+||.|..
T Consensus 64 -~--dy~~~~~adivvitaG 80 (312)
T cd05293 64 -K--DYSVTANSKVVIVTAG 80 (312)
T ss_pred -C--CHHHhCCCCEEEECCC
Confidence 2 3345889999998654
No 188
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.88 E-value=0.52 Score=53.97 Aligned_cols=34 Identities=29% Similarity=0.582 Sum_probs=29.6
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
+||.|+|+|++|+.++..|+..|+. .+|.++|.+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~----~ei~l~D~~ 34 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA----DELVLIDIN 34 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeCC
Confidence 3799999999999999999999982 389999853
No 189
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=90.79 E-value=0.22 Score=40.34 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=19.7
Q ss_pred hhcccchHHHHHHHHHHHHHHHH
Q 001331 741 KEKCEIFQDCITWARLKFEDYFS 763 (1099)
Q Consensus 741 ~~~~~~~~~c~~~a~~~f~~~F~ 763 (1099)
...|.+.+.||+||+.+|+.+|.
T Consensus 23 r~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 23 RNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp HTS-SSHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCchHHHHHHHHHHHHHhC
Confidence 46799999999999999999983
No 190
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.73 E-value=1.5 Score=49.65 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=29.7
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~ 550 (1099)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~------~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF------DVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 479999999999999999999997 799998653
No 191
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.68 E-value=0.6 Score=55.73 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=32.5
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~ 550 (1099)
+.+++|+|+|+|.+|..+++.|..+|+ +++++|.|.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga------~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA------RVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCCc
Confidence 578899999999999999999999998 799988654
No 192
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.67 E-value=0.96 Score=54.80 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=61.4
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
-+.+++|+|+|+|+.|..+|+-|...|. .+++.|..... ......++|.+. .+.+ ..
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~--gi~~--~~ 67 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEE------------------ELGEVSNELKEL--GVKL--VL 67 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCc------------------cchHHHHHHHhC--CCEE--Ee
Confidence 4557899999999999999999999997 79998854311 000111234433 2333 22
Q ss_pred cCCChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEE
Q 001331 191 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 232 (1099)
Q Consensus 191 ~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~ 232 (1099)
....++.+.++|+||.+-. ......+-..+++.+ ||++.
T Consensus 68 ~~~~~~~~~~~dlVV~Spg-i~~~~p~~~~a~~~~--i~i~s 106 (458)
T PRK01710 68 GENYLDKLDGFDVIFKTPS-MRIDSPELVKAKEEG--AYITS 106 (458)
T ss_pred CCCChHHhccCCEEEECCC-CCCCchHHHHHHHcC--CcEEe
Confidence 3223456788999998743 222233455678899 99874
No 193
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.35 E-value=0.77 Score=48.76 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=52.8
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCC
Q 001331 508 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 586 (1099)
Q Consensus 508 ~L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~ 586 (1099)
.+++++++|+|+ |++|..+++.|+..|. ++++++.+ ..|++.+++.+.+.. ..
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~------~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~ 78 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA------RVVLVGRD-------------------LERAQKAADSLRARF-GE 78 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEcCC-------------------HHHHHHHHHHHHhhc-CC
Confidence 457789999996 9999999999999875 77877533 234555555554322 23
Q ss_pred eEEEEecccCcccccccchhhhcCCCEEEEccCch
Q 001331 587 NIEALQNRVGPETENVFDDTFWENITCVINALDNV 621 (1099)
Q Consensus 587 ~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~ 621 (1099)
.+.... ... .+.+ .+.+.++|+||+|+-..
T Consensus 79 ~~~~~~--~~~-~~~~--~~~~~~~diVi~at~~g 108 (194)
T cd01078 79 GVGAVE--TSD-DAAR--AAAIKGADVVFAAGAAG 108 (194)
T ss_pred cEEEee--CCC-HHHH--HHHHhcCCEEEECCCCC
Confidence 333321 111 1111 24568899999998543
No 194
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.32 E-value=0.73 Score=46.64 Aligned_cols=75 Identities=19% Similarity=0.271 Sum_probs=50.1
Q ss_pred CcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCC--eE
Q 001331 512 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL--NI 588 (1099)
Q Consensus 512 ~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~--~i 588 (1099)
.||.|||+ |.+|+.++-.|++.|++ .+|.++|.+ ..|++..+.-+....+.. .+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~----~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~ 57 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA----DEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPV 57 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS----SEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC----CceEEeccC-------------------cccceeeehhhhhhhhhccccc
Confidence 38999999 99999999999999994 469998733 224555555555443333 22
Q ss_pred EEEecccCcccccccchhhhcCCCEEEEccC
Q 001331 589 EALQNRVGPETENVFDDTFWENITCVINALD 619 (1099)
Q Consensus 589 ~~~~~~v~~~~e~~~~~~~~~~~DvVi~alD 619 (1099)
.... +. .+-+++.|+||.+..
T Consensus 58 ~i~~---~~-------~~~~~~aDivvitag 78 (141)
T PF00056_consen 58 RITS---GD-------YEALKDADIVVITAG 78 (141)
T ss_dssp EEEE---SS-------GGGGTTESEEEETTS
T ss_pred cccc---cc-------ccccccccEEEEecc
Confidence 2222 11 133689999998854
No 195
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.28 E-value=1.1 Score=50.94 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=30.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTV 149 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V 149 (1099)
.+|.|||+|..|..||.+|+++|. .++++|.+.-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHH
Confidence 489999999999999999999997 7999996543
No 196
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.14 E-value=1.1 Score=54.51 Aligned_cols=128 Identities=20% Similarity=0.148 Sum_probs=73.0
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
+...+|+|+|+|++|.++|..|...|. +++++|.... ..+....+.|++. .|.+..-.
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~--gv~~~~~~- 71 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDD------------------ERHRALAAILEAL--GATVRLGP- 71 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------hhhHHHHHHHHHc--CCEEEECC-
Confidence 567799999999999999999999997 6999985421 1223334556554 34443211
Q ss_pred CCChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEc--CCceEEEcCCCCCCcceeeccc
Q 001331 192 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF--GPEFTVVDVDGEDPHTGIIASI 268 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~--g~~~~v~d~~ge~p~~~~i~~I 268 (1099)
... ....+|+||.+..-.. ...+-..+++.+ +|++.- . -+.+.++... ..-..|.=++|....+.+|..|
T Consensus 72 ~~~--~~~~~D~Vv~s~Gi~~-~~~~~~~a~~~g--i~v~~~-~-e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~i 143 (480)
T PRK01438 72 GPT--LPEDTDLVVTSPGWRP-DAPLLAAAADAG--IPVWGE-V-ELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASM 143 (480)
T ss_pred Ccc--ccCCCCEEEECCCcCC-CCHHHHHHHHCC--Ceecch-H-HHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHH
Confidence 111 3456899998764211 123345567888 888631 1 1222221110 0123344556665555555554
No 197
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.13 E-value=0.73 Score=52.88 Aligned_cols=31 Identities=23% Similarity=0.583 Sum_probs=28.5
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEec
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 547 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD 547 (1099)
||.|||+|.+|+.++-.|+..|++ +.|.|+|
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~----~elvL~D 31 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF----SEIVLID 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC----CEEEEEe
Confidence 689999999999999999999985 6899997
No 198
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=90.11 E-value=0.99 Score=46.67 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=25.4
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEec
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 547 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD 547 (1099)
.+|.+||+|..|+.++++|+..|. .+++.|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~------~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY------EVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT------EEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC------eEEeec
Confidence 479999999999999999999998 777776
No 199
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.08 E-value=0.92 Score=55.24 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=61.4
Q ss_pred HHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEE
Q 001331 107 ETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVL 186 (1099)
Q Consensus 107 e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v 186 (1099)
++...++..+|+|+|+|+.|..+|+.|...|. .+++.|.+. .+. .+.+.++ .+++
T Consensus 8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~-------------------~~~---~~~l~~~--gi~~ 62 (473)
T PRK00141 8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNE-------------------TAR---HKLIEVT--GVAD 62 (473)
T ss_pred hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCh-------------------HHH---HHHHHhc--CcEE
Confidence 44455677899999999999999999999998 899988431 011 1112222 3333
Q ss_pred EEEecCCChhhccCCcEEEEecC-CHHHHHHHHHHHHhcCCCceeEE
Q 001331 187 STLTSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIK 232 (1099)
Q Consensus 187 ~~~~~~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~ 232 (1099)
....-.++.+.++|+||.+-. +.. ...-..+++++ +|++.
T Consensus 63 --~~~~~~~~~~~~~d~vV~Spgi~~~--~p~~~~a~~~g--i~v~~ 103 (473)
T PRK00141 63 --ISTAEASDQLDSFSLVVTSPGWRPD--SPLLVDAQSQG--LEVIG 103 (473)
T ss_pred --EeCCCchhHhcCCCEEEeCCCCCCC--CHHHHHHHHCC--Cceee
Confidence 333333456678999988753 221 12344668888 88874
No 200
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.04 E-value=1.2 Score=47.40 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=51.5
Q ss_pred HhhcCeEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEE
Q 001331 111 RLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 189 (1099)
Q Consensus 111 kL~~s~VlIiG~-gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~ 189 (1099)
.+++++|+|+|. |++|..+++.|+..| .++++++.+ ..|++...+.+.+.. .+.+...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 467899999996 999999999999988 489988643 235666666664332 2333332
Q ss_pred ec-CCC--hhhccCCcEEEEecC
Q 001331 190 TS-KLT--KEQLSDFQAVVFTDI 209 (1099)
Q Consensus 190 ~~-~l~--~~~l~~~dvVV~~~~ 209 (1099)
.. +.. .+.+.++|+||.++.
T Consensus 84 ~~~~~~~~~~~~~~~diVi~at~ 106 (194)
T cd01078 84 ETSDDAARAAAIKGADVVFAAGA 106 (194)
T ss_pred eCCCHHHHHHHHhcCCEEEECCC
Confidence 11 111 145677888887764
No 201
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.98 E-value=0.74 Score=53.04 Aligned_cols=34 Identities=32% Similarity=0.565 Sum_probs=29.9
Q ss_pred cCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 511 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 511 ~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
..||.|||+|.+|+.++-.|+..|+. ..|.|+|-
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~----~el~L~D~ 39 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIA----DELVIIDI 39 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC
Confidence 45999999999999999999999984 47998873
No 202
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=89.90 E-value=0.9 Score=51.87 Aligned_cols=112 Identities=19% Similarity=0.204 Sum_probs=67.4
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHh-CCCcEEEEEecC-C
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQEL-NNAVVLSTLTSK-L 193 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eL-Np~V~v~~~~~~-l 193 (1099)
+|.|||+|.+|..++.+|...|. +++++|.+.-....+.. .|-..+....+.++.. ++++-+...+.. .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~--------~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALAE--------EGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH--------CCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 69999999999999999999996 68899875422222110 1111111112222222 455555555443 1
Q ss_pred Ch-------hhccCCcEEEEec-CCHHHHHHHHHHHHhcCCCceeEEEeecce
Q 001331 194 TK-------EQLSDFQAVVFTD-ISLDKAIEFDDFCHNHQPAISFIKAEVRGL 238 (1099)
Q Consensus 194 ~~-------~~l~~~dvVV~~~-~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 238 (1099)
.. ..+..-++||++. .+.....++.+.+++.+ +.|+.+.+.|-
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g--~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKG--IHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcC--CEEEeCCCCcC
Confidence 11 1233346677654 35556667888888888 88888776664
No 203
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=89.87 E-value=0.39 Score=55.45 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=59.1
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCcccc-ccCCcccccccCcccchHHHHHHHHHHhhCCCC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEK-SNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 586 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~-sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~ 586 (1099)
.|.+++|-|||+|.||..+++-|...|+ ++...|+-.-.. .... |-. ....+.++-+..
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm------~v~~~d~~~~~~~~~~~----------~~~----~~~~Ld~lL~~s 198 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGM------KVIGYDPYSPRERAGVD----------GVV----GVDSLDELLAEA 198 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCC------eEEEECCCCchhhhccc----------cce----ecccHHHHHhhC
Confidence 6789999999999999999999999999 888888522211 1100 000 011223333345
Q ss_pred eEEEEecccCcccccccchhhhcCC---CEEEEc
Q 001331 587 NIEALQNRVGPETENVFDDTFWENI---TCVINA 617 (1099)
Q Consensus 587 ~i~~~~~~v~~~~e~~~~~~~~~~~---DvVi~a 617 (1099)
.|......++++|..+++.+.+... -++|||
T Consensus 199 Div~lh~PlT~eT~g~i~~~~~a~MK~gailIN~ 232 (324)
T COG0111 199 DILTLHLPLTPETRGLINAEELAKMKPGAILINA 232 (324)
T ss_pred CEEEEcCCCCcchhcccCHHHHhhCCCCeEEEEC
Confidence 6777777777777777776665444 267776
No 204
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.56 E-value=0.5 Score=53.54 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=30.4
Q ss_pred HHhcCcEEEEcCCc-chHHHHHHHHHcCCCCCCCccEEEec
Q 001331 508 KLEDAKVFIVGSGA-LGCEFLKNVALMGVSCGNQGKLTITD 547 (1099)
Q Consensus 508 ~L~~~~v~vvG~Gg-lG~evlk~La~~Gv~~~~~g~i~ivD 547 (1099)
.+.+++|+|+|+|+ +|..++..|...|. .+++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga------tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA------TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC------EEEEEe
Confidence 46788999999999 99999999999987 788875
No 205
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=89.45 E-value=2.1 Score=39.71 Aligned_cols=78 Identities=15% Similarity=0.294 Sum_probs=48.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhCC--CeEEEE-eCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecC
Q 001331 116 NILVSGMQGLGAEIAKNLILAGV--KSVTLH-DEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 192 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGV--g~itlv-D~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~ 192 (1099)
+|.|||+|.+|..+++.|+..|+ .+|.++ +.+ ..|+ +++.+..+ +.+.. ..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~-------------------~~~~----~~~~~~~~-~~~~~--~~ 54 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS-------------------PEKA----AELAKEYG-VQATA--DD 54 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS-------------------HHHH----HHHHHHCT-TEEES--EE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc-------------------HHHH----HHHHHhhc-ccccc--CC
Confidence 68999999999999999999994 345433 321 1132 33333333 22221 11
Q ss_pred CChhhccCCcEEEEecCCHHHHHHHHHH
Q 001331 193 LTKEQLSDFQAVVFTDISLDKAIEFDDF 220 (1099)
Q Consensus 193 l~~~~l~~~dvVV~~~~~~~~~~~ln~~ 220 (1099)
..+.++..|+||+|..+......+.++
T Consensus 55 -~~~~~~~advvilav~p~~~~~v~~~i 81 (96)
T PF03807_consen 55 -NEEAAQEADVVILAVKPQQLPEVLSEI 81 (96)
T ss_dssp -HHHHHHHTSEEEE-S-GGGHHHHHHHH
T ss_pred -hHHhhccCCEEEEEECHHHHHHHHHHH
Confidence 345677899999999876666655555
No 206
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.25 E-value=2 Score=48.44 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=29.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 148 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~ 148 (1099)
.+|.|||+|-+|..+|..|+.+|. .++++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence 579999999999999999999998 899998643
No 207
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.10 E-value=0.93 Score=52.29 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=32.0
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 113 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
.+.+|.|||+|.+|..++-.|++.|+..+.|+|-+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 46799999999999999999999998889999963
No 208
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=89.07 E-value=1.3 Score=51.29 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=55.4
Q ss_pred cCeEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecC
Q 001331 114 ASNILVSGMQGLGAEIAKNLI-LAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 192 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLv-laGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~ 192 (1099)
.++|+|+|+|+.|...++.|. ..|+.+|+|++.+ ..|++..++++.+..+ +++.... +
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~-------------------~~~a~~~a~~~~~~~g-~~v~~~~-~ 187 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD-------------------SAKAEALALQLSSLLG-IDVTAAT-D 187 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEeC-C
Confidence 568999999999999999997 5789999998742 2478888888765332 3443322 1
Q ss_pred CChhhccCCcEEEEecCC
Q 001331 193 LTKEQLSDFQAVVFTDIS 210 (1099)
Q Consensus 193 l~~~~l~~~dvVV~~~~~ 210 (1099)
-++.+.++|+||.|+.+
T Consensus 188 -~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 188 -PRAAMSGADIIVTTTPS 204 (326)
T ss_pred -HHHHhccCCEEEEecCC
Confidence 23467899999999865
No 209
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.06 E-value=2.1 Score=46.05 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=32.1
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
.|++++|+|+|+|.+|..++++|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4788999999999999999999999997 77788754
No 210
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=89.02 E-value=0.62 Score=55.88 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=33.3
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
+.+.+|+|+|+|++|..+++.|...|+..|++++.+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~ 215 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT 215 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 678999999999999999999999999999998753
No 211
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=89.00 E-value=1.1 Score=50.08 Aligned_cols=92 Identities=23% Similarity=0.276 Sum_probs=58.6
Q ss_pred CcEEEEcC-CcchHHHHHHHHHc-CCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEE
Q 001331 512 AKVFIVGS-GALGCEFLKNVALM-GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 589 (1099)
Q Consensus 512 ~~v~vvG~-GglG~evlk~La~~-Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~ 589 (1099)
.||.|+|| |.+|..+++.+... ++ --..++|.+. +...+ + ....+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~-----elvav~d~~~---~~~~~---~---------------------~~~~i~ 49 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDL-----ELVAAVDRPG---SPLVG---Q---------------------GALGVA 49 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCC-----EEEEEEecCC---ccccc---c---------------------CCCCcc
Confidence 48999999 99999999988764 45 2334566442 11100 0 001111
Q ss_pred EEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCccc
Q 001331 590 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAK 647 (1099)
Q Consensus 590 ~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~~ 647 (1099)
. ..+. ++.++.+|+|++++ .+.+-..+...|.++++|++ .|++|+.
T Consensus 50 ~-----~~dl-----~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vv-igttG~s 95 (257)
T PRK00048 50 I-----TDDL-----EAVLADADVLIDFT-TPEATLENLEFALEHGKPLV-IGTTGFT 95 (257)
T ss_pred c-----cCCH-----HHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEE-EECCCCC
Confidence 1 0111 23445799999998 66666778899999999999 4577754
No 212
>PRK06197 short chain dehydrogenase; Provisional
Probab=88.96 E-value=0.87 Score=51.74 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=30.4
Q ss_pred HHHhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 507 KKLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 507 ~~L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
..+.+++|+|.| .||||.++++.|+..|. ++++++.+
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~------~vi~~~r~ 49 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA------HVVLAVRN 49 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeCC
Confidence 345778899998 59999999999999997 67777643
No 213
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=88.95 E-value=1.8 Score=38.95 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=40.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhC
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN 181 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLN 181 (1099)
||+|||.|.+|+|+|..|...|. ++||++...- ++ ...+..-++.+.++|++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~---------~~--~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR---------LL--PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS---------SS--TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch---------hh--hhcCHHHHHHHHHHHHHCC
Confidence 68999999999999999999996 8999886432 11 1233444566677777763
No 214
>PRK08618 ornithine cyclodeaminase; Validated
Probab=88.95 E-value=1.4 Score=51.00 Aligned_cols=161 Identities=14% Similarity=0.073 Sum_probs=87.6
Q ss_pred cccCchhhhhhhhhhHHHHHhhcCC------cccc-c-eeeeeccCCCCCCCCCCCCCCCCccCchhhhhhhcCHHHHHH
Q 001331 437 AVLNPMAAMFGGIVGQEVVKACSGK------FHPL-Y-QFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKK 508 (1099)
Q Consensus 437 ~el~pvaA~iGGiaAQEVIKaiTgk------f~PI-~-q~~~fD~~e~l~~~~~~~~~~~~~~~Rydrqi~l~G~~~q~~ 508 (1099)
+.++.|.+.++|.- --.+|.++.- --|- + ..++||..++.|-.-++...+. .-|-. -....+.....+
T Consensus 49 ~~~~~mp~~~~~~~-~~g~K~~~~~p~n~~~glp~~~g~i~l~d~~tG~p~a~~d~~~lT--~~RTa-a~sala~~~la~ 124 (325)
T PRK08618 49 NTSLIMPGYAEGLE-ALGLKIVSVVPENKKKGKPTIPGTVILSDFETGEVLAILDGTYLT--QIRTG-ALSGVATKYLAR 124 (325)
T ss_pred CcEEEeeeecCCCC-eEEEEEEeecCCCcccCCCcceEEEEEEeCCCCceEEEEccchhh--hhhHH-HHHHHHHHHhcC
Confidence 45566666666421 1247876532 2232 1 3677887777664322221110 01110 111122233333
Q ss_pred HhcCcEEEEcCCcchHHHHHHHH-HcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La-~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
-...+++|+|+|+.|-..+..++ ..|+ .++.|+|.+ ..|++.+++.+.... .++
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~-----~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~ 179 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDI-----ERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTE 179 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCc-----cEEEEECCC-------------------HHHHHHHHHHHHHhc-CCc
Confidence 45678999999999999998875 5677 888888643 235666666665433 233
Q ss_pred EEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEE
Q 001331 588 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 639 (1099)
Q Consensus 588 i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli 639 (1099)
+..+.. . .+...+.|+|++|+-+.. ..+. .+.+.+..++
T Consensus 180 ~~~~~~-----~-----~~~~~~aDiVi~aT~s~~--p~i~-~~l~~G~hV~ 218 (325)
T PRK08618 180 IYVVNS-----A-----DEAIEEADIIVTVTNAKT--PVFS-EKLKKGVHIN 218 (325)
T ss_pred EEEeCC-----H-----HHHHhcCCEEEEccCCCC--cchH-HhcCCCcEEE
Confidence 333211 1 234578999999986542 2333 4444444444
No 215
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=88.93 E-value=0.75 Score=48.55 Aligned_cols=33 Identities=33% Similarity=0.381 Sum_probs=28.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTV 149 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V 149 (1099)
+|.|+|+|..|.-||-.++++|. .++++|.+.-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChH
Confidence 69999999999999999999997 8999997543
No 216
>PRK07063 short chain dehydrogenase; Provisional
Probab=88.90 E-value=1.2 Score=49.02 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=44.0
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCC
Q 001331 508 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 586 (1099)
Q Consensus 508 ~L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~ 586 (1099)
+|.+++++|.| .||||.++++.|+..|. +++++|.+ ..+.+.+++.+...++..
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~------~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~ 58 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA------AVALADLD-------------------AALAERAAAAIARDVAGA 58 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC-------------------HHHHHHHHHHHHhccCCc
Confidence 36778899998 68999999999999997 67777632 223444555555444445
Q ss_pred eEEEEecccCc
Q 001331 587 NIEALQNRVGP 597 (1099)
Q Consensus 587 ~i~~~~~~v~~ 597 (1099)
++..+...+..
T Consensus 59 ~~~~~~~Dl~~ 69 (260)
T PRK07063 59 RVLAVPADVTD 69 (260)
T ss_pred eEEEEEccCCC
Confidence 56666555543
No 217
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.88 E-value=2.4 Score=48.49 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=28.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
.+|.|||+|.+|+.+|..|+.+|. .++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 479999999999999999999997 78999853
No 218
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.72 E-value=1.7 Score=52.32 Aligned_cols=94 Identities=18% Similarity=0.150 Sum_probs=62.0
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
+...+|+|+|+|.+|..+++.|...|. .++++|.+.= + .+.+++..+.+.+ ..+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~-------------------~----~~~~~~~~~~~~~--i~g 282 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPE-------------------R----AEELAEELPNTLV--LHG 282 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH-------------------H----HHHHHHHCCCCeE--EEC
Confidence 567899999999999999999999888 6888885331 1 2233333333332 222
Q ss_pred CC-Ch-----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEE
Q 001331 192 KL-TK-----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKA 233 (1099)
Q Consensus 192 ~l-~~-----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~ 233 (1099)
+. +. ..+.+++.||.+..+......+...|++.+ .+-|.+
T Consensus 283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~--~~~ii~ 328 (453)
T PRK09496 283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLG--AKKVIA 328 (453)
T ss_pred CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhC--CCeEEE
Confidence 22 22 245688998888776566666677888887 444443
No 219
>PRK05854 short chain dehydrogenase; Provisional
Probab=88.63 E-value=1.1 Score=51.30 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=29.0
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 509 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 509 L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
|.+++++|.| .||||.++++.|++.|. ++++++.+
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~------~Vil~~R~ 47 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA------EVILPVRN 47 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 4567888888 78899999999999997 77777643
No 220
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=88.61 E-value=1.2 Score=49.95 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=28.7
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEec
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 547 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD 547 (1099)
..+++++|+|+||+|..++..|+..|. +++++|
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~------~v~v~~ 147 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC------NVIIAN 147 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC------EEEEEe
Confidence 346789999999999999999999886 778875
No 221
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=88.59 E-value=0.87 Score=52.34 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=56.2
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
.|.+++|.|||.|.||.++++.+.-.|+ ++..+|.-.-. + +.|-.. ..+.++.+...
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm------~V~~~d~~~~~-----~-------~~~~~~-----~~l~ell~~sD 198 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGA------KVVYYSTSGKN-----K-------NEEYER-----VSLEELLKTSD 198 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCC------EEEEECCCccc-----c-------ccCcee-----ecHHHHhhcCC
Confidence 5788999999999999999999987777 78888762110 0 111110 12334444556
Q ss_pred EEEEecccCcccccccchhhhcCCC---EEEEc
Q 001331 588 IEALQNRVGPETENVFDDTFWENIT---CVINA 617 (1099)
Q Consensus 588 i~~~~~~v~~~~e~~~~~~~~~~~D---vVi~a 617 (1099)
+.......++++.++++.+.++..- ++||.
T Consensus 199 vv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~ 231 (311)
T PRK08410 199 IISIHAPLNEKTKNLIAYKELKLLKDGAILINV 231 (311)
T ss_pred EEEEeCCCCchhhcccCHHHHHhCCCCeEEEEC
Confidence 6666667777777777766655442 55554
No 222
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=88.54 E-value=1.4 Score=49.49 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=29.8
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 113 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
.+++|+|+|+||+|..++..|...|. +++++|.
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R 148 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANR 148 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 46789999999999999999999996 8999874
No 223
>PRK13243 glyoxylate reductase; Reviewed
Probab=88.50 E-value=0.75 Score=53.38 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=31.5
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
.|.+++|.|||.|.||..+++.|...|+ ++..+|.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~------~V~~~d~ 181 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM------RILYYSR 181 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5788999999999999999999999887 7888875
No 224
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=88.37 E-value=0.9 Score=52.26 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=29.7
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
+..++|.|||.|.||.++++.|...|+ +++.+|.
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~------~V~~~~~ 167 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGF------PLRCWSR 167 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 456799999999999999999999998 7777764
No 225
>PRK06197 short chain dehydrogenase; Provisional
Probab=88.36 E-value=1.4 Score=49.96 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=33.1
Q ss_pred cCHHHHHHhhcCeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 104 YGRETMRRLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 104 ~G~e~q~kL~~s~VlIiG-~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
|+...+..+.+++|+|.| .||+|.++|+.|+..|. ++.+++.
T Consensus 6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 444445567888999998 58999999999999997 6777654
No 226
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.26 E-value=1.5 Score=52.20 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=31.5
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~ 550 (1099)
+.+.+|+|+|+|.+|..+++.+..+|. +++++|.|.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga------~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA------RVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEECCh
Confidence 567899999999999999999999998 688887653
No 227
>PLN00203 glutamyl-tRNA reductase
Probab=88.26 E-value=0.81 Score=56.11 Aligned_cols=34 Identities=24% Similarity=0.554 Sum_probs=30.4
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEec
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 547 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD 547 (1099)
|.+++|+|||+|.+|..++++|...|+ .+|++++
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~-----~~V~V~n 297 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC-----TKMVVVN 297 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC-----CeEEEEe
Confidence 446799999999999999999999998 7888875
No 228
>PRK07574 formate dehydrogenase; Provisional
Probab=88.22 E-value=0.61 Score=55.09 Aligned_cols=35 Identities=40% Similarity=0.564 Sum_probs=31.7
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
.|.+++|.|||.|.||..+++.|...|+ +++.+|.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~------~V~~~dr 223 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV------KLHYTDR 223 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 5888999999999999999999999998 7888774
No 229
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.22 E-value=0.89 Score=52.48 Aligned_cols=109 Identities=12% Similarity=0.091 Sum_probs=63.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCC-----cEEEEE
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA-----VVLSTL 189 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~-----V~v~~~ 189 (1099)
++|.|||+|-+|+.+|.+++.+|. .++++|.+.-.... .+.+.....+.+.+..+. -.++..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 74 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAA------------LRANVANAWPALERQGLAPGASPARLRFV 74 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHH------------HHHHHHHHHHHHHHcCCChhhHHhhceec
Confidence 579999999999999999999997 89999975421111 112222333333332211 011111
Q ss_pred ecCCChhhccCCcEEEEecC-CHHHHHHHHHHHHhcCCCceeEEEeecce
Q 001331 190 TSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGL 238 (1099)
Q Consensus 190 ~~~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 238 (1099)
. .+ ++.+.+.|+|+-+.. +.+.+..+.+-..+.-++=.+|.+.+.|+
T Consensus 75 ~-~l-~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l 122 (321)
T PRK07066 75 A-TI-EACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGL 122 (321)
T ss_pred C-CH-HHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCcc
Confidence 1 11 245789999998865 55555444433333222234677777765
No 230
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.19 E-value=1.3 Score=45.62 Aligned_cols=96 Identities=18% Similarity=0.253 Sum_probs=56.8
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCC--cccccccCcccchHHHHHHHHHHhhCCCCeEEE
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLS--RQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 590 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLn--RQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 590 (1099)
||.|+|+|..|+.++..|+..|. ++++...|.=....|+ |+-. ...|+..+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~------~V~l~~~~~~~~~~i~~~~~n~-------------------~~~~~~~l~~ 55 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH------EVTLWGRDEEQIEEINETRQNP-------------------KYLPGIKLPE 55 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE------EEEEETSCHHHHHHHHHHTSET-------------------TTSTTSBEET
T ss_pred CEEEECcCHHHHHHHHHHHHcCC------EEEEEeccHHHHHHHHHhCCCC-------------------CCCCCcccCc
Confidence 68999999999999999999996 8888877641111111 1100 0112222111
Q ss_pred EecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhccc--ccccEE
Q 001331 591 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY--FQKPLL 639 (1099)
Q Consensus 591 ~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~--~~~Pli 639 (1099)
.-.++.+. .+.+++.|+|+-|+-...-|..+.++... .+.+++
T Consensus 56 -~i~~t~dl-----~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii 100 (157)
T PF01210_consen 56 -NIKATTDL-----EEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIII 100 (157)
T ss_dssp -TEEEESSH-----HHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEE
T ss_pred -ccccccCH-----HHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEE
Confidence 00111111 34578999999999998888888877664 345555
No 231
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.11 E-value=1.3 Score=50.87 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=29.5
Q ss_pred cCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 511 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 511 ~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
..+|.|+|+|.+|+.+++.|+..|. .+++.|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~------~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH------RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 4589999999999999999999997 78888865
No 232
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.09 E-value=1.2 Score=50.62 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=30.0
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~ 550 (1099)
.+|.|||+|.+|+.++..|+..|. .++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~------~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY------DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 579999999999999999999998 799998754
No 233
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.09 E-value=1.5 Score=55.27 Aligned_cols=88 Identities=11% Similarity=0.267 Sum_probs=63.4
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCC
Q 001331 114 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 193 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l 193 (1099)
..+|+|+|+|-+|..+++.|...|+ .++++|.|.- |++. +++. ... ++.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~----~~~~--g~~--v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIET----LRKF--GMK--VFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHH----HHhc--CCe--EEEEeC
Confidence 5799999999999999999999998 6888897552 3332 2222 222 233332
Q ss_pred -Ch-----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCce
Q 001331 194 -TK-----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAIS 229 (1099)
Q Consensus 194 -~~-----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip 229 (1099)
++ .-+++.++||++.++.+....+-..+|++.+.++
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~ 493 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQ 493 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCe
Confidence 22 2456789999999988888888899999875443
No 234
>PRK06487 glycerate dehydrogenase; Provisional
Probab=88.08 E-value=0.9 Score=52.38 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=30.8
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
.|.+++|.|||.|.||.++++.|.-.|+ ++..+|.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm------~V~~~~~ 179 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM------RVLIGQL 179 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC------EEEEECC
Confidence 5888999999999999999999988887 7777764
No 235
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=87.94 E-value=1.3 Score=51.09 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=31.8
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
++..+|.|||+|.+|+.+|-.|+..|+..+.|+|-+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~ 39 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIV 39 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 345799999999999999999999998779999953
No 236
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.81 E-value=2.1 Score=51.05 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=45.4
Q ss_pred cccCCCCCCCchhHhHhh-hhhhccCHHHHHH-----hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001331 81 IMTLGNSNQTDIDEDLHS-RQLAVYGRETMRR-----LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 148 (1099)
Q Consensus 81 ~~~~~~~~~~~~~~~~Ys-RQi~l~G~e~q~k-----L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~ 148 (1099)
.+.+.++......+++|- +|-. | ++..+ +.+.+|+|+|+|.+|..+++.+...|. +++++|.+.
T Consensus 166 v~~vnds~~K~~~dn~~g~g~s~-~--~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~ 235 (413)
T cd00401 166 AINVNDSVTKSKFDNLYGCRESL-I--DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP 235 (413)
T ss_pred EEEecchhhcccccccchhchhh-H--HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 344555544555566773 4433 3 33333 578899999999999999999999999 688888643
No 237
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.80 E-value=5 Score=45.50 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=29.8
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 114 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
-.+|.|||+|..|..+|.+|+.+|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999999999999999999997 78999864
No 238
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.72 E-value=1.6 Score=54.82 Aligned_cols=90 Identities=14% Similarity=0.308 Sum_probs=64.4
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCC
Q 001331 114 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 193 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l 193 (1099)
+.+|+|+|.|.+|..+++.|...|+ .++++|.|.- +++ .+++.. ..++.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~g----~~v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVN----LMRKYG----YKVYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhCC----CeEEEeeC
Confidence 5799999999999999999999999 6899997542 222 233322 22233333
Q ss_pred C-hh-----hccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeE
Q 001331 194 T-KE-----QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 231 (1099)
Q Consensus 194 ~-~~-----~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI 231 (1099)
+ ++ -+++.++||++.++.+....+-..+|+++|.++.|
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~Ii 495 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHIL 495 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEE
Confidence 2 22 35678999999998888888889999987544444
No 239
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.69 E-value=2.2 Score=52.71 Aligned_cols=33 Identities=15% Similarity=0.475 Sum_probs=26.6
Q ss_pred hcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 510 EDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 510 ~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
.++.|+|.| +|+||..+++.|+..|. ++++++.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~------~Vval~R 112 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF------RVRAGVR 112 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC------eEEEEeC
Confidence 345788888 59999999999999997 6766653
No 240
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.60 E-value=2.4 Score=51.24 Aligned_cols=126 Identities=17% Similarity=0.080 Sum_probs=72.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCCC
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT 194 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l~ 194 (1099)
++|+|+|+|+.|..+|+.|...|. .+++.|..... +...+...|.++ .+++..-. ...
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~--gi~~~~g~-~~~ 58 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP------------------ELLERQQELEQE--GITVKLGK-PLE 58 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch------------------hhHHHHHHHHHc--CCEEEECC-ccc
Confidence 479999999999999999999997 78998864321 122233445544 34443211 121
Q ss_pred h----hhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEcCCceEEEcCCCCCCcceeeccc
Q 001331 195 K----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASI 268 (1099)
Q Consensus 195 ~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~~~v~d~~ge~p~~~~i~~I 268 (1099)
. ..+.++|+||.+..-. ....+-..+++.+ +|++.--.. ....... ..-..|.=++|....+.++..|
T Consensus 59 ~~~~~~~~~~~d~vv~s~gi~-~~~~~~~~a~~~~--i~v~~~~~~--~~~~~~~-~~~I~VTGT~GKTTTt~ml~~i 130 (459)
T PRK02705 59 LESFQPWLDQPDLVVVSPGIP-WDHPTLVELRERG--IEVIGEIEL--AWRALKH-IPWVGITGTNGKTTVTALLAHI 130 (459)
T ss_pred hhhhhHHhhcCCEEEECCCCC-CCCHHHHHHHHcC--CcEEEhHHH--HHHhhcC-CCEEEEeCCCchHHHHHHHHHH
Confidence 1 2567899988864311 1223445668888 888742211 1111111 1234455566766655555554
No 241
>PRK09242 tropinone reductase; Provisional
Probab=87.53 E-value=1.9 Score=47.33 Aligned_cols=65 Identities=18% Similarity=0.297 Sum_probs=45.9
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCC
Q 001331 508 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 586 (1099)
Q Consensus 508 ~L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~ 586 (1099)
++.+++++|+| .|+||.++++.|+..|. ++++++.+. .+.+.+.+.+...+|+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~------~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~ 60 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA------DVLIVARDA-------------------DALAQARDELAEEFPER 60 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCCH-------------------HHHHHHHHHHHhhCCCC
Confidence 36678999998 48999999999999997 788876431 23334455555556666
Q ss_pred eEEEEecccCc
Q 001331 587 NIEALQNRVGP 597 (1099)
Q Consensus 587 ~i~~~~~~v~~ 597 (1099)
++..+...+..
T Consensus 61 ~~~~~~~Dl~~ 71 (257)
T PRK09242 61 EVHGLAADVSD 71 (257)
T ss_pred eEEEEECCCCC
Confidence 77766665554
No 242
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=87.48 E-value=2.3 Score=48.58 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=29.8
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q 001331 114 ASNILVSGMQGLGAEIAKNLILAGV-KSVTLHDEG 147 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLvlaGV-g~itlvD~d 147 (1099)
..+|+|||+|.+|..+++.|...|. .+++++|.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 4689999999999999999999997 478888853
No 243
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=87.34 E-value=2.5 Score=48.98 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=25.7
Q ss_pred CcEEEEcC-CcchHHHHHHHHHc-CCCCCCCccEEEecC
Q 001331 512 AKVFIVGS-GALGCEFLKNVALM-GVSCGNQGKLTITDD 548 (1099)
Q Consensus 512 ~~v~vvG~-GglG~evlk~La~~-Gv~~~~~g~i~ivD~ 548 (1099)
++|+|.|+ |-||+.+++.|+.. |. +++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~------~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW------EVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC------eEEEEeC
Confidence 47999996 99999999999876 45 7777764
No 244
>PRK06932 glycerate dehydrogenase; Provisional
Probab=87.33 E-value=0.77 Score=52.88 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=30.4
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
.|.+++|.|||.|.||.++++.|.-.|+ +++.+|.
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~------~V~~~~~ 178 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGM------KVLYAEH 178 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCC------EEEEECC
Confidence 5889999999999999999999988887 6776653
No 245
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=87.25 E-value=1.3 Score=51.33 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=49.9
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhC-CCcE-
Q 001331 115 SNILVSGM-QGLGAEIAKNLILAGV-K-----SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-NAVV- 185 (1099)
Q Consensus 115 s~VlIiG~-gglG~EiaKnLvlaGV-g-----~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLN-p~V~- 185 (1099)
.+|.|||+ |.+|+.+|-.|+..|+ + +|.|+|-.. .+.|++..+.-|.... |...
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~-----------------~~~~a~g~a~Dl~~~~~~~~~~ 66 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP-----------------AMKALEGVAMELEDCAFPLLAG 66 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC-----------------cccccchHHHHHhhccccccCC
Confidence 48999998 9999999999999997 4 688888421 1123444444444444 3322
Q ss_pred EEEEecCCChhhccCCcEEEEecC
Q 001331 186 LSTLTSKLTKEQLSDFQAVVFTDI 209 (1099)
Q Consensus 186 v~~~~~~l~~~~l~~~dvVV~~~~ 209 (1099)
++... =+.+.+.+.|+||++..
T Consensus 67 ~~i~~--~~~~~~~daDvVVitAG 88 (323)
T TIGR01759 67 VVATT--DPEEAFKDVDAALLVGA 88 (323)
T ss_pred cEEec--ChHHHhCCCCEEEEeCC
Confidence 12221 13467889999998865
No 246
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=87.23 E-value=1.6 Score=46.18 Aligned_cols=111 Identities=21% Similarity=0.182 Sum_probs=66.0
Q ss_pred cEEEEcCCcchHHH-HHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEE
Q 001331 513 KVFIVGSGALGCEF-LKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 591 (1099)
Q Consensus 513 ~v~vvG~GglG~ev-lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 591 (1099)
||.+||+|+.-... +..+...-- .-+.++|.+.|-|. .|.-.. ...+.+.+++.+++++|+..
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~-~l~~~ei~L~Did~------~RL~~~---------~~~~~~~~~~~~~~~~v~~t 64 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTE-ELSGSEIVLMDIDE------ERLEIV---------ERLARRMVEEAGADLKVEAT 64 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTT-TSTEEEEEEE-SCH------HHHHHH---------HHHHHHHHHHCTTSSEEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCc-cCCCcEEEEEcCCH------HHHHHH---------HHHHHHHHHhcCCCeEEEEe
Confidence 68999999987763 333333211 11236899988665 121110 12445556677888888876
Q ss_pred ecccCcccccccchhhhcCCCEEEEccC--chHHHHHHHhhcccccccEEEcCcCcccce
Q 001331 592 QNRVGPETENVFDDTFWENITCVINALD--NVNARLYVDQRCLYFQKPLLESGTLGAKCN 649 (1099)
Q Consensus 592 ~~~v~~~~e~~~~~~~~~~~DvVi~alD--n~~ar~~i~~~c~~~~~Pli~sgt~G~~G~ 649 (1099)
..+ .+-+++.|+||+++- ..++|..=.+.+.++|+.-...-|.|..|-
T Consensus 65 td~----------~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~ 114 (183)
T PF02056_consen 65 TDR----------REALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGF 114 (183)
T ss_dssp SSH----------HHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHH
T ss_pred CCH----------HHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHH
Confidence 532 355789999999864 456776666777777776655556665554
No 247
>PRK07831 short chain dehydrogenase; Provisional
Probab=87.04 E-value=2.1 Score=47.29 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=27.7
Q ss_pred HhcCcEEEEcC-C-cchHHHHHHHHHcCCCCCCCccEEEec
Q 001331 509 LEDAKVFIVGS-G-ALGCEFLKNVALMGVSCGNQGKLTITD 547 (1099)
Q Consensus 509 L~~~~v~vvG~-G-glG~evlk~La~~Gv~~~~~g~i~ivD 547 (1099)
+.+++++|.|+ | |||..+++.|+..|. +++++|
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~------~V~~~~ 49 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGA------RVVISD 49 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCC------EEEEEe
Confidence 34578999996 6 799999999999998 577765
No 248
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=87.02 E-value=0.7 Score=42.48 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=33.5
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~ 550 (1099)
.+..++++|+|+|+.|..++..|...|. .+++++|.|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~-----~~v~v~~rdi 57 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGG-----KKVVLCDRDI 57 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCE
Confidence 3778899999999999999999999986 7899998743
No 249
>PRK06141 ornithine cyclodeaminase; Validated
Probab=86.98 E-value=1.9 Score=49.72 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=55.0
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEE
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLIL-AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 189 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvl-aGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~ 189 (1099)
+...++|+|+|+|+.|..+++.+.+ .|+.+|++++.+ ..|++..++++++... .+...
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~--~~~~~ 180 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQGF--DAEVV 180 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--ceEEe
Confidence 4457899999999999999997665 688999998742 3477888888766422 23332
Q ss_pred ecCCChhhccCCcEEEEecCC
Q 001331 190 TSKLTKEQLSDFQAVVFTDIS 210 (1099)
Q Consensus 190 ~~~l~~~~l~~~dvVV~~~~~ 210 (1099)
. . ..+.+.++|+||+|+.+
T Consensus 181 ~-~-~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 181 T-D-LEAAVRQADIISCATLS 199 (314)
T ss_pred C-C-HHHHHhcCCEEEEeeCC
Confidence 1 1 23467799999888764
No 250
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.89 E-value=0.97 Score=50.45 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=26.6
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEec
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 547 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD 547 (1099)
.+|.|||+|.+|..++..|...|. ....+.++|
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~---~~~~v~v~~ 35 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGV---PAKDIIVSD 35 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCC---CcceEEEEc
Confidence 479999999999999999999984 113566665
No 251
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.88 E-value=3 Score=45.83 Aligned_cols=81 Identities=10% Similarity=0.138 Sum_probs=47.8
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEE
Q 001331 113 FASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 189 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~EiaKnLvlaGV---g~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~ 189 (1099)
...+|.|||+|.+|..+++.|...|. ..+.+++... ..|++.+.+. . .+.+ .
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~------------------~~~~~~~~~~---~--~~~~--~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSN------------------VEKLDQLQAR---Y--NVST--T 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCC------------------HHHHHHHHHH---c--CcEE--e
Confidence 45789999999999999999998873 2344443210 1133222222 1 1222 1
Q ss_pred ecCCChhhccCCcEEEEecCCHHHHHHHHHH
Q 001331 190 TSKLTKEQLSDFQAVVFTDISLDKAIEFDDF 220 (1099)
Q Consensus 190 ~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~ 220 (1099)
.+ ..+.+.+.|+||+|..+......+.++
T Consensus 58 -~~-~~~~~~~~DiViiavp~~~~~~v~~~l 86 (245)
T PRK07634 58 -TD-WKQHVTSVDTIVLAMPPSAHEELLAEL 86 (245)
T ss_pred -CC-hHHHHhcCCEEEEecCHHHHHHHHHHH
Confidence 12 234567899999998765544444443
No 252
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=86.84 E-value=1.6 Score=51.43 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=55.9
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
.|.+++|.|||+|.||..+++.|...|+ ++...|+-.-+. .+.+. ...+.++-+...
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~------~V~~~dp~~~~~-----------~~~~~------~~~L~ell~~sD 169 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI------KTLLCDPPRADR-----------GDEGD------FRSLDELVQEAD 169 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECCccccc-----------ccccc------cCCHHHHHhhCC
Confidence 4778899999999999999999999998 888888522110 00010 011222333356
Q ss_pred EEEEecccCcc----cccccchhhhcCC---CEEEEcc
Q 001331 588 IEALQNRVGPE----TENVFDDTFWENI---TCVINAL 618 (1099)
Q Consensus 588 i~~~~~~v~~~----~e~~~~~~~~~~~---DvVi~al 618 (1099)
|......++++ +.++++.++++.. -++||+-
T Consensus 170 iI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~a 207 (378)
T PRK15438 170 ILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINAC 207 (378)
T ss_pred EEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECC
Confidence 66666666653 6667776666544 3667663
No 253
>PRK07062 short chain dehydrogenase; Provisional
Probab=86.81 E-value=2.2 Score=47.05 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=44.2
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 509 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 509 L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
+.++.++|.|+ ||||.++++.|+..|. ++++++.+. .+.+.+++.+.+..|..+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~ 60 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA------SVAICGRDE-------------------ERLASAEARLREKFPGAR 60 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC------eEEEEeCCH-------------------HHHHHHHHHHHhhCCCce
Confidence 56778999985 7899999999999997 688876432 233444555555566656
Q ss_pred EEEEecccCc
Q 001331 588 IEALQNRVGP 597 (1099)
Q Consensus 588 i~~~~~~v~~ 597 (1099)
+..+...+..
T Consensus 61 ~~~~~~D~~~ 70 (265)
T PRK07062 61 LLAARCDVLD 70 (265)
T ss_pred EEEEEecCCC
Confidence 6665555443
No 254
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=86.78 E-value=2.6 Score=50.41 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=33.3
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 148 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~ 148 (1099)
.+.+.+|+|+|+|.+|..+|+.|...|+ +|+++|.+.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 3589999999999999999999999999 799998654
No 255
>PLN02206 UDP-glucuronate decarboxylase
Probab=86.78 E-value=3.2 Score=50.17 Aligned_cols=104 Identities=13% Similarity=0.194 Sum_probs=64.1
Q ss_pred hcCeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 113 FASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 113 ~~s~VlIiG-~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
+..+|||.| .|-+|+.+++.|...|. +|..+|..... +.+.....+ .++ .++....
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~~~~------------------~~~~~~~~~--~~~--~~~~i~~ 174 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNFFTG------------------RKENVMHHF--SNP--NFELIRH 174 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCCCcc------------------chhhhhhhc--cCC--ceEEEEC
Confidence 457899999 58899999999999997 56667642210 000000111 123 3344444
Q ss_pred CCChhhccCCcEEEEecC---------CHH--------HHHHHHHHHHhcCCCceeEEEeecceeEE
Q 001331 192 KLTKEQLSDFQAVVFTDI---------SLD--------KAIEFDDFCHNHQPAISFIKAEVRGLFGS 241 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~~---------~~~--------~~~~ln~~c~~~~~~ipfI~~~~~G~~G~ 241 (1099)
++.+..+.++|+||-+.. +.. ....+-+.|++.+ ++||.+++...||.
T Consensus 175 D~~~~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~SS~~VYg~ 239 (442)
T PLN02206 175 DVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGD 239 (442)
T ss_pred CccChhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECChHHhCC
Confidence 554445567888885432 111 1235667899998 89999998777653
No 256
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.75 E-value=1.2 Score=50.38 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=30.5
Q ss_pred HHhcCcEEEEcCCc-chHHHHHHHHHcCCCCCCCccEEEec
Q 001331 508 KLEDAKVFIVGSGA-LGCEFLKNVALMGVSCGNQGKLTITD 547 (1099)
Q Consensus 508 ~L~~~~v~vvG~Gg-lG~evlk~La~~Gv~~~~~g~i~ivD 547 (1099)
.|.+++|+|||.|. +|..+++.|...|. .+++++
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga------tVtv~~ 189 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA------SVTILH 189 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC------eEEEEe
Confidence 47788999999999 99999999999987 888876
No 257
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=86.74 E-value=1.1 Score=41.22 Aligned_cols=38 Identities=34% Similarity=0.400 Sum_probs=34.5
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 110 RRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 110 ~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
..+..++|+|+|+|++|..++..|...|...++++|.|
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rd 56 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRD 56 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 34788999999999999999999999988899999983
No 258
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=86.73 E-value=1.1 Score=51.13 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=30.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCC
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVK-SVTLHDEG 147 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg-~itlvD~d 147 (1099)
.+|.|+|+|.+|+.+|-.|+.-+++ .+.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4799999999999999999999999 99999953
No 259
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=86.71 E-value=2 Score=48.16 Aligned_cols=65 Identities=18% Similarity=0.318 Sum_probs=51.7
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 509 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 509 L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
+..++++|-| .+|||-++++.||+-|. +++++-. .+.|-+.+++.+.... .+.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~------~liLvaR-------------------~~~kL~~la~~l~~~~-~v~ 57 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY------NLILVAR-------------------REDKLEALAKELEDKT-GVE 57 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC------EEEEEeC-------------------cHHHHHHHHHHHHHhh-Cce
Confidence 3567899999 79999999999999998 8887642 1457788888888877 788
Q ss_pred EEEEecccCccc
Q 001331 588 IEALQNRVGPET 599 (1099)
Q Consensus 588 i~~~~~~v~~~~ 599 (1099)
++.+...+....
T Consensus 58 v~vi~~DLs~~~ 69 (265)
T COG0300 58 VEVIPADLSDPE 69 (265)
T ss_pred EEEEECcCCChh
Confidence 888888777643
No 260
>PLN03139 formate dehydrogenase; Provisional
Probab=86.67 E-value=0.7 Score=54.58 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=31.5
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
.|.+++|.|||+|.||..+++.|..+|+ +++.+|.
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~------~V~~~d~ 230 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNC------NLLYHDR 230 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCC------EEEEECC
Confidence 5788999999999999999999999998 7777774
No 261
>PRK07340 ornithine cyclodeaminase; Validated
Probab=86.62 E-value=1.7 Score=49.78 Aligned_cols=77 Identities=13% Similarity=0.037 Sum_probs=56.8
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEE
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLIL-AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 189 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvl-aGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~ 189 (1099)
+....+|+|+|+|+.|...++.+.. .|+.+|.++|.+ ..|++..++++++.+. .+.
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~-- 178 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE-- 178 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE--
Confidence 3456899999999999999999964 688999998753 3478888888876532 222
Q ss_pred ecCCChhhccCCcEEEEecCCH
Q 001331 190 TSKLTKEQLSDFQAVVFTDISL 211 (1099)
Q Consensus 190 ~~~l~~~~l~~~dvVV~~~~~~ 211 (1099)
... .++.+.++|+||.|+.+.
T Consensus 179 ~~~-~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 179 PLD-GEAIPEAVDLVVTATTSR 199 (304)
T ss_pred ECC-HHHHhhcCCEEEEccCCC
Confidence 111 234678999999988653
No 262
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.61 E-value=1.9 Score=49.63 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=30.1
Q ss_pred cCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 511 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 511 ~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
..||.|||+|.+|+.++-.|++.|++ ..|.|+|-
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~----~el~LiD~ 36 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLA----DELVLVDV 36 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC
Confidence 35899999999999999999999984 57999973
No 263
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=86.61 E-value=1.7 Score=52.12 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=60.5
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
+.+.+|+|+|+|..|..+++.|...| ..+++.|.+... .+...+ ..+-+.+.+ ...
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~-~~~~~~--------------------~~~~~~i~~--~~g 60 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP-EGLAAQ--------------------PLLLEGIEV--ELG 60 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc-cchhhh--------------------hhhccCcee--ecC
Confidence 44899999999999999999999999 589999976553 222111 111223333 333
Q ss_pred CCChhhccCCcEEEEecC-CHHHHHHHHHHHHhcCCCceeE
Q 001331 192 KLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFI 231 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI 231 (1099)
....+++..+|+||.+-. +... .+-+.+++.| +|++
T Consensus 61 ~~~~~~~~~~d~vV~SPGi~~~~--p~v~~A~~~g--i~i~ 97 (448)
T COG0771 61 SHDDEDLAEFDLVVKSPGIPPTH--PLVEAAKAAG--IEII 97 (448)
T ss_pred ccchhccccCCEEEECCCCCCCC--HHHHHHHHcC--CcEE
Confidence 333367889999998753 2222 2455667778 7766
No 264
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=86.58 E-value=1.9 Score=51.21 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=32.2
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~ 550 (1099)
+.+++|+|+|+|.+|..+++.+..+|. +++++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga------~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA------RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC------EEEEEeCCh
Confidence 578899999999999999999999998 688888655
No 265
>PTZ00325 malate dehydrogenase; Provisional
Probab=86.47 E-value=1.4 Score=50.78 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=50.2
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEE
Q 001331 112 LFASNILVSGM-QGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 189 (1099)
Q Consensus 112 L~~s~VlIiG~-gglG~EiaKnLvlaGV-g~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~ 189 (1099)
++-.+|.|+|+ |.+|+.++-.|+..|. .++.|+|-+.. +++ +.-|+..++.+.+...
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~-------------------~g~--a~Dl~~~~~~~~v~~~ 64 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGA-------------------PGV--AADLSHIDTPAKVTGY 64 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCC-------------------ccc--ccchhhcCcCceEEEe
Confidence 34559999999 9999999999987776 47999996211 111 1122333344555544
Q ss_pred ecCCC-hhhccCCcEEEEecC
Q 001331 190 TSKLT-KEQLSDFQAVVFTDI 209 (1099)
Q Consensus 190 ~~~l~-~~~l~~~dvVV~~~~ 209 (1099)
...-+ .+.+.+.|+||.+..
T Consensus 65 td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 65 ADGELWEKALRGADLVLICAG 85 (321)
T ss_pred cCCCchHHHhCCCCEEEECCC
Confidence 33222 467889999998754
No 266
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=86.42 E-value=2.8 Score=41.46 Aligned_cols=93 Identities=18% Similarity=0.305 Sum_probs=56.8
Q ss_pred eEEEEcC-ChHHHHHHHHHHH-hCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhC-CCcEEEEEecC
Q 001331 116 NILVSGM-QGLGAEIAKNLIL-AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-NAVVLSTLTSK 192 (1099)
Q Consensus 116 ~VlIiG~-gglG~EiaKnLvl-aGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLN-p~V~v~~~~~~ 192 (1099)
||.|+|+ |-.|.++++.+.. .|+.=+-.+|...- +.. ..|+|. +..+. ..+.+. .+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~---~~~------g~d~g~---------~~~~~~~~~~v~---~~ 60 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS---AKV------GKDVGE---------LAGIGPLGVPVT---DD 60 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS---TTT------TSBCHH---------HCTSST-SSBEB---S-
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc---ccc------cchhhh---------hhCcCCcccccc---hh
Confidence 7999999 9999999999999 77766666776441 110 123331 11111 122222 11
Q ss_pred CChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEE
Q 001331 193 LTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKA 233 (1099)
Q Consensus 193 l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~ 233 (1099)
+ ++.+...||||+.+ ..+.....-++|.+++ +|+|.+
T Consensus 61 l-~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g--~~~ViG 97 (124)
T PF01113_consen 61 L-EELLEEADVVIDFT-NPDAVYDNLEYALKHG--VPLVIG 97 (124)
T ss_dssp H-HHHTTH-SEEEEES--HHHHHHHHHHHHHHT---EEEEE
T ss_pred H-HHhcccCCEEEEcC-ChHHhHHHHHHHHhCC--CCEEEE
Confidence 2 24555689999888 5566777888888999 888863
No 267
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=86.38 E-value=0.77 Score=42.66 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=54.1
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEe-cCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEE
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTIT-DDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 591 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~iv-D~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 591 (1099)
||.+||+|.+|..+++.|+..|+ ...+++++ +.+. .|+ +.+.+..+ +.+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~---~~~~v~~~~~r~~-------------------~~~----~~~~~~~~-~~~~~~ 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI---KPHEVIIVSSRSP-------------------EKA----AELAKEYG-VQATAD 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS----GGEEEEEEESSH-------------------HHH----HHHHHHCT-TEEESE
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CceeEEeeccCcH-------------------HHH----HHHHHhhc-cccccC
Confidence 68999999999999999999996 22466644 3221 122 22223333 111110
Q ss_pred ecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhh-cccccccEEE
Q 001331 592 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQR-CLYFQKPLLE 640 (1099)
Q Consensus 592 ~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~-c~~~~~Pli~ 640 (1099)
+. .+..+..|+||.|+........+... ....++-+|+
T Consensus 54 ------~~-----~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis 92 (96)
T PF03807_consen 54 ------DN-----EEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVIS 92 (96)
T ss_dssp ------EH-----HHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred ------Ch-----HHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEE
Confidence 11 35567999999999988888777766 2334455553
No 268
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=86.36 E-value=1.6 Score=49.91 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=60.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHh-CCCcEEEEEecCCC
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQEL-NNAVVLSTLTSKLT 194 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eL-Np~V~v~~~~~~l~ 194 (1099)
+|.|||+|..|..++.+|+..|. .++++|.+.-....+... |...+....+....+ .+++-+...+....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~ 72 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED--------RTTGVANLRELSQRLSAPRVVWVMVPHGIV 72 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc--------CCcccCCHHHHHhhcCCCCEEEEEcCchHH
Confidence 69999999999999999999995 788888754322222111 100000001111111 24444444433211
Q ss_pred hh-------hccCCcEEEEecC-CHHHHHHHHHHHHhcCCCceeEEEeecc
Q 001331 195 KE-------QLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRG 237 (1099)
Q Consensus 195 ~~-------~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G 237 (1099)
.+ .+..=++||.+.. ......++.+.+.+.+ +.|+.+.+.|
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g--~~~vda~vsG 121 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKG--IHLLDCGTSG 121 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcC--CeEEecCCCC
Confidence 11 1223356666543 3344555666677777 7777776655
No 269
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=86.32 E-value=1.8 Score=57.07 Aligned_cols=95 Identities=15% Similarity=0.089 Sum_probs=59.3
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhC-CC------------eEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHH
Q 001331 113 FASNILVSGMQGLGAEIAKNLILAG-VK------------SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQE 179 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~EiaKnLvlaG-Vg------------~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~e 179 (1099)
+.++|+|+|+|.+|..++.+|+..+ +. .+++.|. ...+|+.+.+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~-------------------~~~~a~~la~~--- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL-------------------YLKDAKETVEG--- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC-------------------CHHHHHHHHHh---
Confidence 4679999999999999999998753 32 2444442 22244443333
Q ss_pred hCCCcEEEEE-ecCCC--hhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEE
Q 001331 180 LNNAVVLSTL-TSKLT--KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKA 233 (1099)
Q Consensus 180 LNp~V~v~~~-~~~l~--~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~ 233 (1099)
.|.++.... ..+.. ...+++.|+||.|... .....+...|-++| +.++..
T Consensus 626 -~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaG--kHvv~e 678 (1042)
T PLN02819 626 -IENAEAVQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELK--KHLVTA 678 (1042)
T ss_pred -cCCCceEEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcC--CCEEEC
Confidence 244322221 11211 1245689999988864 45678889999999 777654
No 270
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=86.31 E-value=0.78 Score=52.32 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=28.2
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~ 550 (1099)
+|.|||+|..|+.++.+|+..|. ++++.|.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~------~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH------DCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC------EEEEEECCH
Confidence 69999999999999999999997 777777553
No 271
>PRK06436 glycerate dehydrogenase; Provisional
Probab=86.15 E-value=0.92 Score=51.94 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=31.6
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
.|.+++|.|||.|.||.++++.|...|+ +++.+|..
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~------~V~~~~r~ 154 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGM------NIYAYTRS 154 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECCC
Confidence 4788999999999999999998888887 78888853
No 272
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=86.12 E-value=1 Score=53.17 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=31.9
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
.|.+++|.|||+|.||..+++.|...|+ ++.+.|+
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~------~V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW------KVLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 4778899999999999999999999998 8888885
No 273
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.10 E-value=4.3 Score=45.91 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=27.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
+|+|+|+|.+|+.+|..|..+|. .++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVAR 31 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence 69999999999999999999994 7999986
No 274
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.09 E-value=2.9 Score=50.39 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=60.7
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
+.+.+|+|+|.|+.|..+|+.|...|. .+++.|..... . ...+|.+....+ .....
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~~-----------------~----~~~~l~~~~~gi--~~~~g 58 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELKP-----------------E----RVAQIGKMFDGL--VFYTG 58 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCc-----------------h----hHHHHhhccCCc--EEEeC
Confidence 457899999999999999999999997 68888854321 0 012344322233 33334
Q ss_pred CCChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEE
Q 001331 192 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 232 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~ 232 (1099)
...+..+.++|+||.+..=.. ...+-..+++++ +|++.
T Consensus 59 ~~~~~~~~~~d~vv~spgi~~-~~p~~~~a~~~~--i~v~~ 96 (445)
T PRK04308 59 RLKDALDNGFDILALSPGISE-RQPDIEAFKQNG--GRVLG 96 (445)
T ss_pred CCCHHHHhCCCEEEECCCCCC-CCHHHHHHHHcC--CcEEE
Confidence 434445678999998764111 123445667888 88873
No 275
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.06 E-value=2.2 Score=40.98 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=56.2
Q ss_pred EEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEEec
Q 001331 514 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQN 593 (1099)
Q Consensus 514 v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~~ 593 (1099)
|+|+|+|.+|-++++.|...|. .++++|.|.-. .+.+.... +..+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~------~vvvid~d~~~-----------------------~~~~~~~~----~~~i~g 47 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI------DVVVIDRDPER-----------------------VEELREEG----VEVIYG 47 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS------EEEEEESSHHH-----------------------HHHHHHTT----SEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCCC------EEEEEECCcHH-----------------------HHHHHhcc----cccccc
Confidence 6899999999999999999654 89999977521 22222222 223333
Q ss_pred ccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhccc
Q 001331 594 RVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY 633 (1099)
Q Consensus 594 ~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~ 633 (1099)
.... ...+...-+++++.|+.++++......+...++.
T Consensus 48 d~~~--~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 48 DATD--PEVLERAGIEKADAVVILTDDDEENLLIALLARE 85 (116)
T ss_dssp -TTS--HHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHH
T ss_pred cchh--hhHHhhcCccccCEEEEccCCHHHHHHHHHHHHH
Confidence 3332 2223334467899999999998888887777766
No 276
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=85.97 E-value=1.1 Score=51.13 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=65.5
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhh-CCCCeEEEE
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSI-NPRLNIEAL 591 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~-np~~~i~~~ 591 (1099)
+|.+||+|.+|..++++|+..|. ++++.|.+.-....+. +.|-.-+....+.+... ++++-+...
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~------~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH------EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC------eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEe
Confidence 69999999999999999999997 7888887632111110 01111111122222222 345444444
Q ss_pred ecccCcccccccc--hhhhcCCCEEEEccC-chHHHHHHHhhcccccccEEEcCcCcc
Q 001331 592 QNRVGPETENVFD--DTFWENITCVINALD-NVNARLYVDQRCLYFQKPLLESGTLGA 646 (1099)
Q Consensus 592 ~~~v~~~~e~~~~--~~~~~~~DvVi~alD-n~~ar~~i~~~c~~~~~Pli~sgt~G~ 646 (1099)
... ...+.+++ ...+..-++||++.- .+..-+.+.+.+...++-++|+...|.
T Consensus 68 ~~~--~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 68 PAG--EITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred cCC--cHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 432 11111221 012334467777744 333444566777778888888877775
No 277
>PRK10537 voltage-gated potassium channel; Provisional
Probab=85.91 E-value=2 Score=50.97 Aligned_cols=93 Identities=10% Similarity=0.019 Sum_probs=60.2
Q ss_pred HHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEE
Q 001331 109 MRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLST 188 (1099)
Q Consensus 109 q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~ 188 (1099)
+...++.||+|+|.|.+|.++++.|...|. .++++|.+.++. .. ...+ .+
T Consensus 235 ~~~~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~------------------------~~---~~g~--~v 284 (393)
T PRK10537 235 SHMHRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEH------------------------RL---PDDA--DL 284 (393)
T ss_pred hhcccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhh------------------------hc---cCCC--cE
Confidence 344457899999999999999999998887 678888652210 00 0111 12
Q ss_pred EecCC-Chh-----hccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeE
Q 001331 189 LTSKL-TKE-----QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 231 (1099)
Q Consensus 189 ~~~~l-~~~-----~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI 231 (1099)
..++. +++ -+++.+.||++.++.+....+-..+|+.++.++.|
T Consensus 285 I~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kII 333 (393)
T PRK10537 285 IPGDSSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSSDVKTV 333 (393)
T ss_pred EEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEE
Confidence 22222 222 35577888888777666666777788887544444
No 278
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=85.85 E-value=3.5 Score=46.80 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=29.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 148 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~ 148 (1099)
++|.|||+|-+|..+|.+|+.+|. .++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999996 899998643
No 279
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=85.79 E-value=3.1 Score=50.78 Aligned_cols=87 Identities=17% Similarity=0.264 Sum_probs=67.1
Q ss_pred HHHHHHhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhh
Q 001331 504 KLQKKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSI 582 (1099)
Q Consensus 504 ~~q~~L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~ 582 (1099)
..+.-+.+++|+|-|+ |.+|+|+++.++..+. .+|.++|.|. .|-..+...+...
T Consensus 243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p-----~~i~l~~~~E-------------------~~~~~i~~el~~~ 298 (588)
T COG1086 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNP-----KEIILFSRDE-------------------YKLYLIDMELREK 298 (588)
T ss_pred HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCC-----CEEEEecCch-------------------HHHHHHHHHHHhh
Confidence 3467789999999985 5699999999999999 8999987654 3455677788888
Q ss_pred CCCCeEEEEecccCcccccccchhhhcC--CCEEEEc
Q 001331 583 NPRLNIEALQNRVGPETENVFDDTFWEN--ITCVINA 617 (1099)
Q Consensus 583 np~~~i~~~~~~v~~~~e~~~~~~~~~~--~DvVi~a 617 (1099)
.|..++..+-..+.+.. .+ ...+++ .|+|+-|
T Consensus 299 ~~~~~~~~~igdVrD~~-~~--~~~~~~~kvd~VfHA 332 (588)
T COG1086 299 FPELKLRFYIGDVRDRD-RV--ERAMEGHKVDIVFHA 332 (588)
T ss_pred CCCcceEEEecccccHH-HH--HHHHhcCCCceEEEh
Confidence 88888888888776532 22 244566 8889877
No 280
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=85.72 E-value=2.8 Score=48.22 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=34.9
Q ss_pred cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 104 YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 104 ~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
|+......+.+++|.|+|+|.+|.++|+.|...|+ ++..+|.
T Consensus 126 w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~ 167 (312)
T PRK15469 126 WQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSR 167 (312)
T ss_pred cCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 65333346889999999999999999999999998 6777775
No 281
>PLN02602 lactate dehydrogenase
Probab=85.53 E-value=1.9 Score=50.40 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=30.0
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
.||.|||+|.+|+.++-.|+..|++ +.|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~----~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA----DELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC----CEEEEEeC
Confidence 5999999999999999999999984 68999973
No 282
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.42 E-value=2.7 Score=47.64 Aligned_cols=33 Identities=30% Similarity=0.308 Sum_probs=30.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 148 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~ 148 (1099)
.+|.|+|+|.+|..+|..|+..|. .|+++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999998 799999654
No 283
>PRK08618 ornithine cyclodeaminase; Validated
Probab=85.41 E-value=2.7 Score=48.66 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=56.4
Q ss_pred hhcCeEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 112 LFASNILVSGMQGLGAEIAKNLI-LAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLv-laGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
-...+|+|+|+|+.|...+..+. ..|+++|+|+|.+ ..|++...+++++.. .+.+....
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~~~~~~ 184 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTEIYVVN 184 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhc-CCcEEEeC
Confidence 35688999999999999988775 5699999999753 237777777776533 23333332
Q ss_pred cCCChhhccCCcEEEEecCCHH
Q 001331 191 SKLTKEQLSDFQAVVFTDISLD 212 (1099)
Q Consensus 191 ~~l~~~~l~~~dvVV~~~~~~~ 212 (1099)
. .++.+.+.|+||.|+.+.+
T Consensus 185 ~--~~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 185 S--ADEAIEEADIIVTVTNAKT 204 (325)
T ss_pred C--HHHHHhcCCEEEEccCCCC
Confidence 1 1346788999999987654
No 284
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=85.39 E-value=3.6 Score=50.48 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=29.7
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~ 550 (1099)
.+|.|||+|.+|+.++.+|++.|. .+++.|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~------~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI------DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCH
Confidence 479999999999999999999998 889998743
No 285
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=85.31 E-value=4.7 Score=49.25 Aligned_cols=117 Identities=11% Similarity=0.106 Sum_probs=71.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccch---HHHHHHHHHHHh-CCCcEEEEEe
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN---RALASVQKLQEL-NNAVVLSTLT 190 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~---Kaea~~~~L~eL-Np~V~v~~~~ 190 (1099)
++|.+||+|-.|..+|.||+..|. +++++|.+.-....+... ....|.. -+....+..+.+ .|.+-+....
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 479999999999999999999997 899998653222221110 0000110 111122222222 3666665554
Q ss_pred cCC-Ch-------hhccCCcEEEEecC-CHHHHHHHHHHHHhcCCCceeEEEeecce
Q 001331 191 SKL-TK-------EQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGL 238 (1099)
Q Consensus 191 ~~l-~~-------~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 238 (1099)
..- .+ ..+..=++||++.- +++...++.+.+.++| +.|+.+.+.|-
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~G--i~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKG--LLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC--CeEEeCCCcCC
Confidence 321 11 12344578887654 5677778888999999 88998887764
No 286
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.25 E-value=6.5 Score=44.54 Aligned_cols=32 Identities=34% Similarity=0.461 Sum_probs=29.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
.+|.|+|+|.+|+.+|..|+.+|. .++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 589999999999999999999997 79999854
No 287
>PRK07576 short chain dehydrogenase; Provisional
Probab=85.23 E-value=1.4 Score=48.79 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=31.4
Q ss_pred HHHhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 507 KKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 507 ~~L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
.++.+++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~------~V~~~~r~ 42 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGA------NVAVASRS 42 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 3577889999985 8999999999999997 68888754
No 288
>PRK07680 late competence protein ComER; Validated
Probab=85.22 E-value=5.2 Score=44.95 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=48.4
Q ss_pred eEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecC
Q 001331 116 NILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 192 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGV---g~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~ 192 (1099)
+|.|||+|.+|..++..|...|. ..++++|.+. .++ +.+.+..+.+.+. . +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~----~~~~~~~~g~~~~--~-~ 55 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKA----YHIKERYPGIHVA--K-T 55 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHH----HHHHHHcCCeEEE--C-C
Confidence 69999999999999999999984 4577766421 122 2233322333322 1 1
Q ss_pred CChhhccCCcEEEEecCCHHHHHHHHHH
Q 001331 193 LTKEQLSDFQAVVFTDISLDKAIEFDDF 220 (1099)
Q Consensus 193 l~~~~l~~~dvVV~~~~~~~~~~~ln~~ 220 (1099)
..+.+.+.|+||+|..+......+.++
T Consensus 56 -~~~~~~~aDiVilav~p~~~~~vl~~l 82 (273)
T PRK07680 56 -IEEVISQSDLIFICVKPLDIYPLLQKL 82 (273)
T ss_pred -HHHHHHhCCEEEEecCHHHHHHHHHHH
Confidence 224567899999998654444444443
No 289
>PRK08251 short chain dehydrogenase; Provisional
Probab=85.18 E-value=3 Score=45.39 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=43.3
Q ss_pred cCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEE
Q 001331 511 DAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 589 (1099)
Q Consensus 511 ~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~ 589 (1099)
+++++|.| .||||.++++.|+..|. ++++++.+. .+...+...+...+|..++.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~------~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~ 56 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR------DLALCARRT-------------------DRLEELKAELLARYPGIKVA 56 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC------EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEE
Confidence 46788887 89999999999999996 777776431 12333444555566766777
Q ss_pred EEecccCc
Q 001331 590 ALQNRVGP 597 (1099)
Q Consensus 590 ~~~~~v~~ 597 (1099)
.+...+..
T Consensus 57 ~~~~D~~~ 64 (248)
T PRK08251 57 VAALDVND 64 (248)
T ss_pred EEEcCCCC
Confidence 66665554
No 290
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=85.13 E-value=0.79 Score=48.20 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=34.5
Q ss_pred HHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 001331 108 TMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTV 149 (1099)
Q Consensus 108 ~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V 149 (1099)
....|.+++|.|+|+|.+|.++|+-|.-.|. +|..+|...-
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~ 70 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPK 70 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCH
T ss_pred CccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCC
Confidence 3457899999999999999999999999999 8999987543
No 291
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=85.08 E-value=1.9 Score=49.25 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=48.5
Q ss_pred EEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCC---CeEEE
Q 001331 514 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR---LNIEA 590 (1099)
Q Consensus 514 v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~---~~i~~ 590 (1099)
|.|||+|.+|+.++-.|+..|++ .+|+++|.+ +.|++..+.-+....+. .++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~----~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~ 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA----SELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC----CEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE
Confidence 57999999999999999999984 579999842 23445555556555543 12211
Q ss_pred EecccCcccccccchhhhcCCCEEEEccC
Q 001331 591 LQNRVGPETENVFDDTFWENITCVINALD 619 (1099)
Q Consensus 591 ~~~~v~~~~e~~~~~~~~~~~DvVi~alD 619 (1099)
..+ .+-++++|+||.+..
T Consensus 58 -----~~~------~~~l~~aDiVIitag 75 (300)
T cd00300 58 -----GGD------YADAADADIVVITAG 75 (300)
T ss_pred -----CCC------HHHhCCCCEEEEcCC
Confidence 111 134689999999864
No 292
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.92 E-value=3 Score=51.12 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=60.2
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
+.+.+|+|+|+|+.|..+|+.|...|. +++..|..... + ..+.|.+.-+.+.+. ..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~~-----------------~----~~~~L~~~~~~~~~~--~g 60 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTREAP-----------------P----NLAALRAELPDAEFV--GG 60 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCCCCc-----------------h----hHHHHHhhcCCcEEE--eC
Confidence 457789999999999999999999997 78888853310 0 112344433333433 33
Q ss_pred CCChhhccCCcEEEEecC-CHH--HHHHHHHHHHhcCCCceeE
Q 001331 192 KLTKEQLSDFQAVVFTDI-SLD--KAIEFDDFCHNHQPAISFI 231 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~~-~~~--~~~~ln~~c~~~~~~ipfI 231 (1099)
...++.+.++|+||.+.. +.. ....+-..+++.+ +|++
T Consensus 61 ~~~~~~~~~~d~vv~sp~I~~~~~~~~~~~~~a~~~~--i~v~ 101 (498)
T PRK02006 61 PFDPALLDGVDLVALSPGLSPLEAALAPLVAAARERG--IPVW 101 (498)
T ss_pred CCchhHhcCCCEEEECCCCCCcccccCHHHHHHHHCC--CcEE
Confidence 344566778999998753 221 0113344557788 8888
No 293
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=84.92 E-value=2.1 Score=49.99 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=58.2
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 592 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 592 (1099)
+|+|+|+|.||.-.+..+.+.|. .+|+++|.+. .|.+.|++.. . ..+....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga-----~~Viv~d~~~-------------------~Rl~~A~~~~----g-~~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA-----SVVIVVDRSP-------------------ERLELAKEAG----G-ADVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC-----ceEEEeCCCH-------------------HHHHHHHHhC----C-CeEeecC
Confidence 79999999999999999999999 8999997543 1222222211 1 1111110
Q ss_pred cccCcccccccchhhh--cCCCEEEEccCchHHHHHHHhhcccccccEE
Q 001331 593 NRVGPETENVFDDTFW--ENITCVINALDNVNARLYVDQRCLYFQKPLL 639 (1099)
Q Consensus 593 ~~v~~~~e~~~~~~~~--~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli 639 (1099)
.. ....+.++ +.- ..+|+||+|+.+..+.....+.++..+.-.+
T Consensus 222 ~~-~~~~~~~~--~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 222 SE-DDAGAEIL--ELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVV 267 (350)
T ss_pred cc-ccHHHHHH--HHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 00 00001110 111 3699999999988877777777766555444
No 294
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=84.92 E-value=5.2 Score=45.78 Aligned_cols=32 Identities=31% Similarity=0.343 Sum_probs=28.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 148 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~ 148 (1099)
+|.|+|+|.+|+.++.+|...|. .++++|.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 79999999999999999999997 588888643
No 295
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=84.89 E-value=1.8 Score=46.90 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=30.1
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 509 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 509 L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
+++++|+|.| +|++|..+++.|+..|. ++++++.+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~------~V~~~~r~ 39 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA------EVIVVDIC 39 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeCC
Confidence 5677899998 79999999999999997 78887754
No 296
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=84.84 E-value=7.8 Score=40.10 Aligned_cols=93 Identities=22% Similarity=0.242 Sum_probs=59.8
Q ss_pred EEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCCCh
Q 001331 117 ILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 195 (1099)
Q Consensus 117 VlIiG~-gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l~~ 195 (1099)
|+|+|+ |.+|..+++.|+..| .+|+.+=. + ..|.+. .+.++ ....++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R----------~---------~~~~~~--------~~~~~--~~~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVR----------S---------PSKAED--------SPGVE--IIQGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEES----------S---------GGGHHH--------CTTEE--EEESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEec----------C---------chhccc--------ccccc--cceeeehh
Confidence 799997 999999999999999 46666432 1 112222 45444 44444422
Q ss_pred -----hhccCCcEEEEecCC----HHHHHHHHHHHHhcCCCceeEEEeecceeE
Q 001331 196 -----EQLSDFQAVVFTDIS----LDKAIEFDDFCHNHQPAISFIKAEVRGLFG 240 (1099)
Q Consensus 196 -----~~l~~~dvVV~~~~~----~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 240 (1099)
..+.++|+||.+..+ ......+-+.|++.+. ..+|..++.|.++
T Consensus 51 ~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~-~~~v~~s~~~~~~ 103 (183)
T PF13460_consen 51 PDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGV-KRVVYLSSAGVYR 103 (183)
T ss_dssp HHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTS-SEEEEEEETTGTT
T ss_pred hhhhhhhhhhcchhhhhhhhhccccccccccccccccccc-ccceeeeccccCC
Confidence 346789999988652 3445577788888882 2556556666443
No 297
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.80 E-value=3.6 Score=46.39 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=28.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
+|.|||+|.+|..+++.|...|. .|+++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 69999999999999999999996 78888863
No 298
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=84.72 E-value=4.6 Score=46.51 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=28.2
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHD 145 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD 145 (1099)
|++++|.|||+|.+|..+|++|..+|+ .+++.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~-~Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGL-NVIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCC-eEEEEE
Confidence 568899999999999999999999998 455444
No 299
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=84.68 E-value=0.82 Score=52.37 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=29.3
Q ss_pred cCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 511 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 511 ~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
..||+|+|+||+|+.++-.|++.|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~------~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL------PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC------CeEEEEec
Confidence 4589999999999999999999996 78888764
No 300
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=84.66 E-value=2.2 Score=51.06 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=75.2
Q ss_pred eEEEEcCChHHH-HHHHHHHH----hCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 116 NILVSGMQGLGA-EIAKNLIL----AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 116 ~VlIiG~gglG~-EiaKnLvl----aGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
+|.|||.|++-+ ++.+.|+. .++++|+|+|-|. ...|.. -...+.+.+.+.++.++|...+
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 799999999865 77777776 5789999999763 111210 1234555666777777877765
Q ss_pred cCCChhhccCCcEEEEecC--CHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEE
Q 001331 191 SKLTKEQLSDFQAVVFTDI--SLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 244 (1099)
Q Consensus 191 ~~l~~~~l~~~dvVV~~~~--~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~ 244 (1099)
+ -++-+.+.|+||.+.. ..+.+..-.++..++| + +-..+.|..|..+.
T Consensus 68 d--~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~G--i--~gqET~G~GG~~~a 117 (419)
T cd05296 68 D--RREALEGADFVFTQIRVGGLEARALDERIPLKHG--V--IGQETTGAGGFAKA 117 (419)
T ss_pred C--HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcC--C--ccccCCCcchHHHh
Confidence 4 3456789999998764 4455656666788887 4 45788888886654
No 301
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=84.64 E-value=1.2 Score=45.10 Aligned_cols=29 Identities=38% Similarity=0.482 Sum_probs=26.0
Q ss_pred EEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 117 ILVSGMQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 117 VlIiG~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
|+|+|+|++|+.+|-.|..+|. .+++++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEc
Confidence 7999999999999999999887 6888774
No 302
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=84.64 E-value=0.9 Score=48.82 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=32.0
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
.|.+++|+|+|.|.+|..+++.|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~------~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA------KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCC
Confidence 3677899999999999999999999997 88888754
No 303
>PRK05854 short chain dehydrogenase; Provisional
Probab=84.60 E-value=4.4 Score=46.35 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=40.4
Q ss_pred hhcCeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEE
Q 001331 112 LFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLS 187 (1099)
Q Consensus 112 L~~s~VlIiG-~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~ 187 (1099)
|.+++|+|.| .+|+|.++|+.|+..|. +|.+++.+ ..+++.+.+.|.+.++..++.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~ 68 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN-------------------RAKGEAAVAAIRTAVPDAKLS 68 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhCCCCceE
Confidence 5677888887 67999999999999996 67776532 235666667776666644443
No 304
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.50 E-value=3.4 Score=49.76 Aligned_cols=94 Identities=15% Similarity=0.197 Sum_probs=60.4
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEE
Q 001331 510 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 589 (1099)
Q Consensus 510 ~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~ 589 (1099)
...+|+|+|+|.+|..+++.|...|. .++++|.|.= + .+.+.+..+++.
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~------~v~vid~~~~-------------------~----~~~~~~~~~~~~-- 278 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY------SVKLIERDPE-------------------R----AEELAEELPNTL-- 278 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC------eEEEEECCHH-------------------H----HHHHHHHCCCCe--
Confidence 45789999999999999999999997 8899985531 1 111222222332
Q ss_pred EEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccc
Q 001331 590 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQK 636 (1099)
Q Consensus 590 ~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~ 636 (1099)
.+...... ...+.....+++|.|+.++++......+...|+.++.
T Consensus 279 ~i~gd~~~--~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~ 323 (453)
T PRK09496 279 VLHGDGTD--QELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGA 323 (453)
T ss_pred EEECCCCC--HHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCC
Confidence 22222221 1122233457899999999988777777666666543
No 305
>PRK06223 malate dehydrogenase; Reviewed
Probab=84.50 E-value=5.4 Score=45.61 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=29.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
.+|.|||+|.+|..+|..|+..|++.+.|+|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999999769999996
No 306
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.15 E-value=5.6 Score=44.87 Aligned_cols=82 Identities=22% Similarity=0.232 Sum_probs=49.7
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEE
Q 001331 113 FASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 189 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~EiaKnLvlaGV---g~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~ 189 (1099)
...+|.+||+|.+|..++++|...|+ ..|+++|... ..+++. +.+.. .+++.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~------------------~~~~~~----l~~~~-g~~~~-- 56 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSN------------------ETRLQE----LHQKY-GVKGT-- 56 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCC------------------HHHHHH----HHHhc-CceEe--
Confidence 34589999999999999999999983 3444443210 012222 22211 23322
Q ss_pred ecCCChhhccCCcEEEEecCCHHHHHHHHHHH
Q 001331 190 TSKLTKEQLSDFQAVVFTDISLDKAIEFDDFC 221 (1099)
Q Consensus 190 ~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c 221 (1099)
. . ..+...+.|+||+|..+......+..+.
T Consensus 57 ~-~-~~e~~~~aDvVilav~p~~~~~vl~~l~ 86 (279)
T PRK07679 57 H-N-KKELLTDANILFLAMKPKDVAEALIPFK 86 (279)
T ss_pred C-C-HHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence 1 1 2245678899999998776665565554
No 307
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.15 E-value=3.3 Score=49.79 Aligned_cols=126 Identities=20% Similarity=0.213 Sum_probs=70.8
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
+++++|+|+|.|++|..+|+.|...|. ++++.|.+.-.. ....+.|.+.. +.+. ..
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~-------------------~~~~~~l~~~g--~~~~--~~ 58 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSE-------------------NPEAQELLEEG--IKVI--CG 58 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccc-------------------hhHHHHHHhcC--CEEE--eC
Confidence 467899999999999999999999997 788888543110 11223444432 3332 22
Q ss_pred CCChhhccC-CcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEcCCceEEEcCCCCCCcceeeccc
Q 001331 192 KLTKEQLSD-FQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASI 268 (1099)
Q Consensus 192 ~l~~~~l~~-~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~~~v~d~~ge~p~~~~i~~I 268 (1099)
....+.+.. +|+||.+.. ......+-+.+++.+ +|++.-.- +.... .+ ..--.|.=++|....+.++..|
T Consensus 59 ~~~~~~~~~~~d~vV~s~g-i~~~~~~~~~a~~~~--i~v~~~~e--l~~~~-~~-~~~I~VTGT~GKTTTt~ll~~i 129 (447)
T PRK02472 59 SHPLELLDEDFDLMVKNPG-IPYTNPMVEKALEKG--IPIITEVE--LAYLI-SE-APIIGITGSNGKTTTTTLIGEM 129 (447)
T ss_pred CCCHHHhcCcCCEEEECCC-CCCCCHHHHHHHHCC--CcEEeHHH--HHHHh-cC-CCEEEEeCCCchHHHHHHHHHH
Confidence 222233444 898888653 111223556678889 88874211 21111 11 1223444556665555555544
No 308
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=84.12 E-value=1.2 Score=56.18 Aligned_cols=89 Identities=18% Similarity=0.220 Sum_probs=62.0
Q ss_pred cCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEE
Q 001331 511 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 590 (1099)
Q Consensus 511 ~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 590 (1099)
+.+|+|+|+|-+|..+++.|...|+ .++++|.|.-. ++.+ ++. +. ..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~~-------------------v~~~----~~~--g~--~v 446 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV------KMTVLDHDPDH-------------------IETL----RKF--GM--KV 446 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC------CEEEEECCHHH-------------------HHHH----Hhc--CC--eE
Confidence 4699999999999999999999998 89999987621 2222 111 22 23
Q ss_pred EecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccc
Q 001331 591 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF 634 (1099)
Q Consensus 591 ~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~ 634 (1099)
+..+.+. .+++...-.+++|.||.++||.+....+-..+++.
T Consensus 447 ~~GDat~--~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 447 FYGDATR--MDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH 488 (621)
T ss_pred EEEeCCC--HHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 3333322 22232334568999999999999888887777765
No 309
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=84.03 E-value=8.4 Score=43.97 Aligned_cols=31 Identities=32% Similarity=0.370 Sum_probs=28.3
Q ss_pred EEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 117 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 117 VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
|.|||+|.+|+-+|-.|++.|...++|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999987799999975
No 310
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.97 E-value=3.5 Score=50.20 Aligned_cols=92 Identities=16% Similarity=0.064 Sum_probs=59.8
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
+++++|+|+|+|-.|..+++-|...|. .+++.|.+... + ... ...|++ .+ .....
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~-~v~~~d~~~~~--~-------------~~~----~~~l~~---~~--~~~~~ 60 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLP-AQALTLFCNAV--E-------------ARE----VGALAD---AA--LLVET 60 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCC-EEEEEcCCCcc--c-------------chH----HHHHhh---cC--EEEeC
Confidence 467899999999999999999999998 57888854331 0 001 112433 22 22223
Q ss_pred CCChhhccCCcEEEEecC-CHHHHHHHHHHHHhcCCCceeEE
Q 001331 192 KLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIK 232 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~ 232 (1099)
.-.++.+.++|+||.+-. +. ...+-..+++.+ +|++.
T Consensus 61 ~~~~~~~~~~d~vV~SpgI~~--~~p~~~~a~~~~--i~i~~ 98 (468)
T PRK04690 61 EASAQRLAAFDVVVKSPGISP--YRPEALAAAARG--TPFIG 98 (468)
T ss_pred CCChHHccCCCEEEECCCCCC--CCHHHHHHHHcC--CcEEE
Confidence 334567788999988753 22 223455668888 89885
No 311
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.91 E-value=6.5 Score=44.57 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=27.1
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
+|+|+|+|++|+.+|..|..+|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999995 6888874
No 312
>PRK09242 tropinone reductase; Provisional
Probab=83.80 E-value=5.3 Score=43.82 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=44.5
Q ss_pred HhhcCeEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEE
Q 001331 111 RLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 189 (1099)
Q Consensus 111 kL~~s~VlIiG~-gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~ 189 (1099)
+|++++++|.|+ ||+|.++++.|+..|. +|++++.+ ..+.+...+.+...+|..++...
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD-------------------ADALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence 467789999985 7999999999999997 67777642 12445556666666666666555
Q ss_pred ecCC
Q 001331 190 TSKL 193 (1099)
Q Consensus 190 ~~~l 193 (1099)
..++
T Consensus 66 ~~Dl 69 (257)
T PRK09242 66 AADV 69 (257)
T ss_pred ECCC
Confidence 4443
No 313
>PLN02206 UDP-glucuronate decarboxylase
Probab=83.76 E-value=3.2 Score=50.14 Aligned_cols=33 Identities=18% Similarity=0.487 Sum_probs=28.2
Q ss_pred hcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 510 EDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 510 ~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
+++||+|.| +|-||+.+++.|...|. +++++|.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~------~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD------SVIVVDN 151 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC------EEEEEeC
Confidence 347899999 69999999999999997 7777764
No 314
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.75 E-value=5.9 Score=45.72 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=28.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
.+|.|+|+|.+|+.++.+|+..|. .++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 379999999999999999999996 68888764
No 315
>PRK05867 short chain dehydrogenase; Provisional
Probab=83.75 E-value=2.2 Score=46.80 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=29.0
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 509 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 509 L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
+.+++++|.|+ ||||.++++.|+..|. ++++++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~------~V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA------QVAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEcC
Confidence 56788999995 8999999999999997 6777753
No 316
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.71 E-value=6.9 Score=44.32 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=29.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 148 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~ 148 (1099)
++|.|||+|-+|..+|.+|+.+|. .++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999996 799998754
No 317
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=83.67 E-value=5.7 Score=38.89 Aligned_cols=93 Identities=19% Similarity=0.115 Sum_probs=52.5
Q ss_pred eEEEEc-CChHHHHHHHHHHHhC-CCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCC
Q 001331 116 NILVSG-MQGLGAEIAKNLILAG-VKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 193 (1099)
Q Consensus 116 ~VlIiG-~gglG~EiaKnLvlaG-Vg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l 193 (1099)
||.|+| .|-+|.++++.|...- +.-+.++.... ..|+.-.+... .+...-.+.... .
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~---------------~~g~~~~~~~~----~~~~~~~~~~~~--~ 59 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR---------------SAGKPLSEVFP----HPKGFEDLSVED--A 59 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT---------------TTTSBHHHTTG----GGTTTEEEBEEE--T
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc---------------ccCCeeehhcc----ccccccceeEee--c
Confidence 799999 8889999999888732 22233333221 24443222111 111122333333 4
Q ss_pred ChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEE
Q 001331 194 TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 232 (1099)
Q Consensus 194 ~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~ 232 (1099)
+.+.+.+.|+|++|..+... ..+...+.+.| +++|+
T Consensus 60 ~~~~~~~~Dvvf~a~~~~~~-~~~~~~~~~~g--~~ViD 95 (121)
T PF01118_consen 60 DPEELSDVDVVFLALPHGAS-KELAPKLLKAG--IKVID 95 (121)
T ss_dssp SGHHHTTESEEEE-SCHHHH-HHHHHHHHHTT--SEEEE
T ss_pred chhHhhcCCEEEecCchhHH-HHHHHHHhhCC--cEEEe
Confidence 55667899999999865444 45555557778 66663
No 318
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.67 E-value=1.6 Score=50.52 Aligned_cols=74 Identities=9% Similarity=0.134 Sum_probs=48.4
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhCCC------eEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhC----CC
Q 001331 115 SNILVSGM-QGLGAEIAKNLILAGVK------SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN----NA 183 (1099)
Q Consensus 115 s~VlIiG~-gglG~EiaKnLvlaGVg------~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLN----p~ 183 (1099)
.+|.|+|+ |.+|+.+|-.|+..|+- +|.|+|-.. + +.|+++-+.-|+... +.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~----~-------------~~~a~g~a~Dl~~~~~~~~~~ 65 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQ----A-------------LKALEGVAMELEDCAFPLLAE 65 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCC----c-------------ccccceeehhhhhccccccCc
Confidence 58999999 99999999999998874 699998521 0 112222222333322 23
Q ss_pred cEEEEEecCCChhhccCCcEEEEecC
Q 001331 184 VVLSTLTSKLTKEQLSDFQAVVFTDI 209 (1099)
Q Consensus 184 V~v~~~~~~l~~~~l~~~dvVV~~~~ 209 (1099)
+.|. .+ +.+-+.+.|+||+|..
T Consensus 66 ~~i~--~~--~~~~~~daDivvitaG 87 (322)
T cd01338 66 IVIT--DD--PNVAFKDADWALLVGA 87 (322)
T ss_pred eEEe--cC--cHHHhCCCCEEEEeCC
Confidence 3433 22 3467889999998865
No 319
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=83.57 E-value=6.7 Score=48.64 Aligned_cols=105 Identities=18% Similarity=0.168 Sum_probs=60.3
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhC-------CC
Q 001331 112 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-------NA 183 (1099)
Q Consensus 112 L~~s~VlIiG~-gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLN-------p~ 183 (1099)
..+..|+|.|+ |++|..+++.|+..|. +|++++.+. .+++...+.+.++. +.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~~ 137 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQPV 137 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhcccccccccc
Confidence 34568999985 8999999999999996 566655321 13333333333211 11
Q ss_pred cEEEEEecCCCh-----hhccCCcEEEEecCCH---------------HHHHHHHHHHHhcCCCceeEEEeecc
Q 001331 184 VVLSTLTSKLTK-----EQLSDFQAVVFTDISL---------------DKAIEFDDFCHNHQPAISFIKAEVRG 237 (1099)
Q Consensus 184 V~v~~~~~~l~~-----~~l~~~dvVV~~~~~~---------------~~~~~ln~~c~~~~~~ipfI~~~~~G 237 (1099)
.++.++..++.+ ..+.+.|+||.+.... .....+-+.|+..+. -.||..++.|
T Consensus 138 ~~v~iV~gDLtD~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agV-gRIV~VSSig 210 (576)
T PLN03209 138 EKLEIVECDLEKPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKV-NHFILVTSLG 210 (576)
T ss_pred CceEEEEecCCCHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCC-CEEEEEccch
Confidence 234555555542 2467889988774311 112344566666651 2466666654
No 320
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=83.50 E-value=0.97 Score=53.96 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=30.5
Q ss_pred cCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc
Q 001331 511 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550 (1099)
Q Consensus 511 ~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~ 550 (1099)
..+|+|||+|-+||++|-.||+.|+ +++|+|+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl------~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV------PVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC------cEEEEEccC
Confidence 3589999999999999999999998 899999643
No 321
>PLN02928 oxidoreductase family protein
Probab=83.47 E-value=1.4 Score=51.35 Aligned_cols=102 Identities=23% Similarity=0.255 Sum_probs=0.0
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeE
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 588 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i 588 (1099)
|.+++|.|||.|.||.++++.|...|+ +++.+|.-.-........+.......-..+.. -...+.+.-+...|
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~afG~------~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDi 229 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRPFGV------KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADI 229 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhhCCC------EEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCE
Q ss_pred EEEecccCcccccccchhhhcCCC---EEEEc
Q 001331 589 EALQNRVGPETENVFDDTFWENIT---CVINA 617 (1099)
Q Consensus 589 ~~~~~~v~~~~e~~~~~~~~~~~D---vVi~a 617 (1099)
.......++++..+++.+.+...- ++||.
T Consensus 230 Vvl~lPlt~~T~~li~~~~l~~Mk~ga~lINv 261 (347)
T PLN02928 230 VVLCCTLTKETAGIVNDEFLSSMKKGALLVNI 261 (347)
T ss_pred EEECCCCChHhhcccCHHHHhcCCCCeEEEEC
No 322
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=83.46 E-value=6 Score=48.52 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 148 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~ 148 (1099)
.+|.|||+|-+|+.+|.+|+.+|. .++++|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 479999999999999999999998 899998743
No 323
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.41 E-value=3 Score=47.53 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=28.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 148 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~ 148 (1099)
+|.+||+|-+|..++++|...|. .|+++|.+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~ 33 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQ 33 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 69999999999999999999996 688888653
No 324
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=83.26 E-value=2 Score=49.26 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=29.7
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001331 114 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 148 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~ 148 (1099)
..+|+|+|+|++|+-+|..|..+| ..++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 468999999999999999999999 4888887654
No 325
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.22 E-value=8 Score=44.56 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=27.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
+|.|+|+|++|+.++..|..+|. .+++++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 69999999999999999999994 68888753
No 326
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.20 E-value=6.5 Score=44.37 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=48.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecC
Q 001331 116 NILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 192 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGV---g~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~ 192 (1099)
+|.|||+|.+|..+++.|...|. .++.+++.+.- .++ +.+....+.+.+. .+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~----~~l~~~~~~~~~~---~~ 57 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHF----NQLYDKYPTVELA---DN 57 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHH----HHHHHHcCCeEEe---CC
Confidence 69999999999999999999983 46777664210 121 1222222333321 11
Q ss_pred CChhhccCCcEEEEecCCHHHHHHHHHH
Q 001331 193 LTKEQLSDFQAVVFTDISLDKAIEFDDF 220 (1099)
Q Consensus 193 l~~~~l~~~dvVV~~~~~~~~~~~ln~~ 220 (1099)
..+.+.+.|+||+|..+......+.++
T Consensus 58 -~~e~~~~aDvVilavpp~~~~~vl~~l 84 (277)
T PRK06928 58 -EAEIFTKCDHSFICVPPLAVLPLLKDC 84 (277)
T ss_pred -HHHHHhhCCEEEEecCHHHHHHHHHHH
Confidence 224567899999998765544444444
No 327
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.20 E-value=3.8 Score=47.08 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=28.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhCC-CeEEEEeC
Q 001331 116 NILVSGMQGLGAEIAKNLILAGV-KSVTLHDE 146 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGV-g~itlvD~ 146 (1099)
+|.|||+|.+|+.+|-.|+..|+ .++.++|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 69999999999999999999996 78999995
No 328
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=83.17 E-value=3.2 Score=45.50 Aligned_cols=35 Identities=20% Similarity=0.474 Sum_probs=29.9
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 509 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 509 L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
+.+++|+|.| .|+||.++++.|+..|. +++++|.+
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~------~V~~~~r~ 43 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA------EVILNGRD 43 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC------EEEEEeCC
Confidence 5678999998 59999999999999997 68877653
No 329
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=83.15 E-value=2.4 Score=51.52 Aligned_cols=116 Identities=12% Similarity=0.129 Sum_probs=68.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccch--HHHHHHHHHHHh-CCCcEEEEEec
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN--RALASVQKLQEL-NNAVVLSTLTS 191 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~--Kaea~~~~L~eL-Np~V~v~~~~~ 191 (1099)
++|.|||+|..|..+|.||...|. +|+++|.+.-....+... ...-|.+ .+....+.++.+ .|.+-+-....
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~----~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKK----AKEGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh----hhhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 579999999999999999999998 799998754332222110 0000100 011122233333 35544433222
Q ss_pred -CCCh-------hhccCCcEEEEecC-CHHHHHHHHHHHHhcCCCceeEEEeecc
Q 001331 192 -KLTK-------EQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRG 237 (1099)
Q Consensus 192 -~l~~-------~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G 237 (1099)
...+ ..+..=++||++.- ......+..+.+.++| +.|+.+.+.|
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~G--i~fldapVSG 129 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKG--ILYLGMGVSG 129 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcC--CeEEcCCCCC
Confidence 1111 12444577887654 4555556677888888 8899888877
No 330
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.14 E-value=5.6 Score=45.53 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=29.6
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 114 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
..+|.|+|+|.+|+.+|++|...|. .|+++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4589999999999999999999996 78999865
No 331
>PRK09186 flagellin modification protein A; Provisional
Probab=83.07 E-value=3.1 Score=45.50 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=27.6
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEec
Q 001331 509 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITD 547 (1099)
Q Consensus 509 L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD 547 (1099)
+.+++|+|.| .|+||.++++.|+..|. ++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~------~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG------IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEe
Confidence 3567899998 58999999999999997 677664
No 332
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.05 E-value=2.6 Score=45.83 Aligned_cols=34 Identities=32% Similarity=0.478 Sum_probs=29.5
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 509 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 509 L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
|.+++++|.|+ |+||..+++.|+..|. +++++|.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~------~vi~~~r 37 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA------KLALIDL 37 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 56788999996 9999999999999997 6788773
No 333
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.98 E-value=1.7 Score=55.60 Aligned_cols=168 Identities=15% Similarity=0.145 Sum_probs=89.8
Q ss_pred CcEEEEcCCcchHHHHHHHH-HcCCCCCCCccEEEecCCccccccCCccc------ccccCcccchHHHHHHHHHHhhCC
Q 001331 512 AKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQF------LFRDWNIGQAKSTVAASAATSINP 584 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La-~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQf------lf~~~diG~~Ka~vaa~~l~~~np 584 (1099)
++|.|||+|-.|+.++-.++ +.|+ .++++|.+. ..|.|-. +-..-.-|+...+.+.+.+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~------~V~l~d~~~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---- 376 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL------PVRIKDINP---QGINHALKYSWDLLDKKVKRRHLKPSERDKQMA---- 376 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC------eEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh----
Confidence 47999999999999999999 8898 899998753 1121100 00000001111111111111
Q ss_pred CCeEEEEecccCcccccccchhhhcCCCEEEEccC-chHHHHHHHhhcccccc--cEEEcCcCcccce-eEEEeCccccc
Q 001331 585 RLNIEALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTEN 660 (1099)
Q Consensus 585 ~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alD-n~~ar~~i~~~c~~~~~--Pli~sgt~G~~G~-~~v~ip~~t~c 660 (1099)
+|+... + + +-++++|+||.|+- +.+.++.+-...-.+-. .++-+-|.+..-. ..-.+.+-..+
T Consensus 377 --~i~~~~--------~-~--~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ 443 (708)
T PRK11154 377 --LISGTT--------D-Y--RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQV 443 (708)
T ss_pred --cEEEeC--------C-h--HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccce
Confidence 222211 1 1 22589999999974 66777765554444333 3454444442111 00011111222
Q ss_pred CCCCCCCCCCCCCcccccCCCCCcchhHHHHHHHhhhhccCChhhh
Q 001331 661 YGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 706 (1099)
Q Consensus 661 y~c~~~p~~~~~p~Ct~~~~P~~~~Hci~wAr~~F~~lF~~~~~~~ 706 (1099)
.+.+.-.|....|++-+-.-|.....++.++..++.. .+..|-.+
T Consensus 444 ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~-~gk~pv~v 488 (708)
T PRK11154 444 IGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKK-QGKTPIVV 488 (708)
T ss_pred EEEecCCccccCceEEEECCCCCCHHHHHHHHHHHHH-cCCceEEE
Confidence 2222222333457777777888888999999987754 46655443
No 334
>PRK06523 short chain dehydrogenase; Provisional
Probab=82.96 E-value=3.3 Score=45.47 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=49.9
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchH-HHHHHHHHHhhCCC
Q 001331 508 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK-STVAASAATSINPR 585 (1099)
Q Consensus 508 ~L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~K-a~vaa~~l~~~np~ 585 (1099)
++.+++|+|.| .|+||.++++.|+..|. ++++++.+.-+ ++.....+...|+.... .+.+.+.+.+..+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~------~v~~~~r~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA------RVVTTARSRPD--DLPEGVEFVAADLTTAEGCAAVARAVLERLGG 77 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC------EEEEEeCChhh--hcCCceeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 36678999998 58999999999999998 78888876422 23333434455776542 33344444444444
Q ss_pred CeEEEEec
Q 001331 586 LNIEALQN 593 (1099)
Q Consensus 586 ~~i~~~~~ 593 (1099)
+.+..+..
T Consensus 78 id~vi~~a 85 (260)
T PRK06523 78 VDILVHVL 85 (260)
T ss_pred CCEEEECC
Confidence 55544443
No 335
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.88 E-value=4 Score=49.25 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=74.6
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCC
Q 001331 114 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 193 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l 193 (1099)
...|+|+|+|+.|..+|+-|...|. .+++.|...- .. ..+.|.+.++.+.+.. ...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~-----------------~~----~~~~l~~~~~g~~~~~--~~~ 61 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSREQ-----------------PP----GLDTLAREFPDVELRC--GGF 61 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCCCC-----------------ch----hHHHHHhhcCCcEEEe--CCC
Confidence 4679999999999999999999997 7888884320 00 1123555444554443 333
Q ss_pred ChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEcCCceEEEcCCCCCCcceeecccc
Q 001331 194 TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASIS 269 (1099)
Q Consensus 194 ~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~~~v~d~~ge~p~~~~i~~I~ 269 (1099)
+.+.+.++|+||.+.. .+.....-..+++++ +|++.-. .+.+.+. -..--.|.=++|....+.+|..|-
T Consensus 62 ~~~~~~~~d~vV~sp~-i~~~~p~~~~a~~~~--i~i~~~~--el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL 130 (448)
T PRK03803 62 DCELLVQASEIIISPG-LALDTPALRAAAAMG--IEVIGDI--ELFAREA--KAPVIAITGSNGKSTVTTLVGEMA 130 (448)
T ss_pred ChHHhcCCCEEEECCC-CCCCCHHHHHHHHCC--CcEEEHH--HHHHHhc--CCCEEEEECCCcHHHHHHHHHHHH
Confidence 4566778999988753 111122344567888 8887411 1122221 112344555677766666666653
No 336
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=82.79 E-value=3.7 Score=47.57 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=30.9
Q ss_pred HHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 001331 109 MRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHD 145 (1099)
Q Consensus 109 q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD 145 (1099)
...|++++|.|||+|.+|..+|+||..+|+ .+.+.+
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 345788999999999999999999999998 566655
No 337
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=82.73 E-value=5 Score=46.36 Aligned_cols=85 Identities=16% Similarity=0.204 Sum_probs=54.6
Q ss_pred HHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEE
Q 001331 109 MRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLST 188 (1099)
Q Consensus 109 q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~ 188 (1099)
...+++++|.|+|+|.+|.++|+.|.-.| ..|.-...... +-+...+...+
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~-------------------~~~~~~~~~~~--------- 207 (336)
T KOG0069|consen 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQL-------------------PPEEAYEYYAE--------- 207 (336)
T ss_pred cccccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCC-------------------chhhHHHhccc---------
Confidence 35789999999999999999999999877 44433321111 11222222211
Q ss_pred EecCC-ChhhccCCcEEEEec-CCHHHHHHHHH-HHHhcC
Q 001331 189 LTSKL-TKEQLSDFQAVVFTD-ISLDKAIEFDD-FCHNHQ 225 (1099)
Q Consensus 189 ~~~~l-~~~~l~~~dvVV~~~-~~~~~~~~ln~-~c~~~~ 225 (1099)
.. -++.+.+.|+||+|. ++.+++..+|+ .|.+.+
T Consensus 208 ---~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk 244 (336)
T KOG0069|consen 208 ---FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMK 244 (336)
T ss_pred ---ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcC
Confidence 22 235788999988776 47778888886 344444
No 338
>PRK08339 short chain dehydrogenase; Provisional
Probab=82.73 E-value=3.9 Score=45.44 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=28.8
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 509 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 509 L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
|.++.++|.|+ ||||.++++.|+..|. +++++|.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~------~V~~~~r 40 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA------DVILLSR 40 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC------EEEEEeC
Confidence 56778899985 7999999999999997 7888764
No 339
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=82.73 E-value=3.7 Score=46.08 Aligned_cols=89 Identities=20% Similarity=0.161 Sum_probs=51.8
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEE
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 591 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 591 (1099)
.||.|||+|.+|..+++.|...+... .-+.++|.+ ..+++.+++ ... . ..+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~---elv~v~d~~-------------------~~~a~~~a~---~~~--~--~~~ 52 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINA---ELYAFYDRN-------------------LEKAENLAS---KTG--A--KAC 52 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCe---EEEEEECCC-------------------HHHHHHHHH---hcC--C--eeE
Confidence 37999999999999999998764200 223455533 122332322 111 1 111
Q ss_pred ecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEE
Q 001331 592 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLE 640 (1099)
Q Consensus 592 ~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~ 640 (1099)
.+. ++++.+.|+|+.|+.... ...+-..+.+.++.++.
T Consensus 53 -----~~~-----~ell~~~DvVvi~a~~~~-~~~~~~~al~~Gk~Vvv 90 (265)
T PRK13304 53 -----LSI-----DELVEDVDLVVECASVNA-VEEVVPKSLENGKDVII 90 (265)
T ss_pred -----CCH-----HHHhcCCCEEEEcCChHH-HHHHHHHHHHcCCCEEE
Confidence 111 234478999999985444 44444455667888775
No 340
>PRK08291 ectoine utilization protein EutC; Validated
Probab=82.73 E-value=4.4 Score=46.95 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=53.5
Q ss_pred cCeEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecC
Q 001331 114 ASNILVSGMQGLGAEIAKNLIL-AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 192 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLvl-aGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~ 192 (1099)
.++|+|+|+|+.|..++..|.. .|+..++|++.+ ..|++..++++++.. .+.+.... +
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~~-d 190 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVAR-D 190 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEeC-C
Confidence 4689999999999999999985 578999998642 237777777775432 24443322 1
Q ss_pred CChhhccCCcEEEEecCC
Q 001331 193 LTKEQLSDFQAVVFTDIS 210 (1099)
Q Consensus 193 l~~~~l~~~dvVV~~~~~ 210 (1099)
-++.+.++|+||.|+..
T Consensus 191 -~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 191 -VHEAVAGADIIVTTTPS 207 (330)
T ss_pred -HHHHHccCCEEEEeeCC
Confidence 13456789999988765
No 341
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=82.69 E-value=0.57 Score=57.36 Aligned_cols=108 Identities=15% Similarity=0.218 Sum_probs=67.9
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHHc-----CCCCCC-CccEEEecCCccccccCCcccccccCcccchHHHHHHHHHH
Q 001331 507 KKLEDAKVFIVGSGALGCEFLKNVALM-----GVSCGN-QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT 580 (1099)
Q Consensus 507 ~~L~~~~v~vvG~GglG~evlk~La~~-----Gv~~~~-~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~ 580 (1099)
++|.+.||+++|||+-|.-+++.|+.. |+.-.+ ..+|.++|.+-+-... | .+++...|...|..
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r-----~~~l~~~k~~fa~~--- 386 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--R-----KDSLQPFKKPFAHD--- 386 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--C-----CccChHHHHHHHhh---
Confidence 578899999999999999999999984 552111 2589999987542221 1 11144455554443
Q ss_pred hhCCCCeEEEEecccCcccccccchhhhcC--CCEEEEccC--chHHHHHHHhhcccccccEEEc
Q 001331 581 SINPRLNIEALQNRVGPETENVFDDTFWEN--ITCVINALD--NVNARLYVDQRCLYFQKPLLES 641 (1099)
Q Consensus 581 ~~np~~~i~~~~~~v~~~~e~~~~~~~~~~--~DvVi~alD--n~~ar~~i~~~c~~~~~Pli~s 641 (1099)
.+. . . .+ .+.++. .|++|.+.- +.-....|..++.....|+|.+
T Consensus 387 --~~~---------~-~---~L--~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFa 434 (581)
T PLN03129 387 --HEP---------G-A---SL--LEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFA 434 (581)
T ss_pred --ccc---------C-C---CH--HHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 111 0 1 11 234455 788777653 4566677888887778888843
No 342
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.59 E-value=3.2 Score=49.99 Aligned_cols=125 Identities=20% Similarity=0.193 Sum_probs=73.2
Q ss_pred HHhhc-CeEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEE
Q 001331 110 RRLFA-SNILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLS 187 (1099)
Q Consensus 110 ~kL~~-s~VlIiG~gglG~EiaKnLvlaGV-g~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~ 187 (1099)
.|+.+ .+|+|+|+|+.|...+.-|...|- -.+++.|..... . ..++|++ .+++
T Consensus 2 ~~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~-----------------~----~~~~l~~---g~~~- 56 (438)
T PRK04663 2 DRWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETP-----------------P----GQEQLPE---DVEL- 56 (438)
T ss_pred CcccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCc-----------------h----hHHHhhc---CCEE-
Confidence 35556 789999999999999999999864 478888853210 0 1123422 3333
Q ss_pred EEecCCChhhccCCcEEEEecC-CHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEcCCceEEEcCCCCCCcceeec
Q 001331 188 TLTSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIA 266 (1099)
Q Consensus 188 ~~~~~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~~~v~d~~ge~p~~~~i~ 266 (1099)
..+..+++.+.++|+||.+.. +.. ...-..+++++ ||++.-. .+.+.+. . ..--.|.=++|....+.++.
T Consensus 57 -~~g~~~~~~~~~~d~vV~SpgI~~~--~p~~~~a~~~g--i~i~~~~--el~~~~~-~-~~~I~VTGTnGKTTTt~ll~ 127 (438)
T PRK04663 57 -HSGGWNLEWLLEADLVVTNPGIALA--TPEIQQVLAAG--IPVVGDI--ELFAWAV-D-KPVIAITGSNGKSTVTDLTG 127 (438)
T ss_pred -EeCCCChHHhccCCEEEECCCCCCC--CHHHHHHHHCC--CcEEEHH--HHHHhhc-C-CCEEEEeCCCCHHHHHHHHH
Confidence 333344556778999888754 221 22345667888 8887422 1222221 1 12344555667666555555
Q ss_pred cc
Q 001331 267 SI 268 (1099)
Q Consensus 267 ~I 268 (1099)
.|
T Consensus 128 ~i 129 (438)
T PRK04663 128 VM 129 (438)
T ss_pred HH
Confidence 54
No 343
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=82.59 E-value=1.7 Score=44.12 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=41.8
Q ss_pred CcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEE
Q 001331 512 AKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 590 (1099)
Q Consensus 512 ~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 590 (1099)
+.++|+| +||||-++++.|++.|- .++.+++.+ ....+.+.+++.+...+ .++..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~-----~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~ 56 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA-----RVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITF 56 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT-----EEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc-----eEEEEeeec-----------------ccccccccccccccccc--ccccc
Confidence 3578887 89999999999999987 788877644 11234444455555333 56666
Q ss_pred EecccCc
Q 001331 591 LQNRVGP 597 (1099)
Q Consensus 591 ~~~~v~~ 597 (1099)
+...+..
T Consensus 57 ~~~D~~~ 63 (167)
T PF00106_consen 57 IECDLSD 63 (167)
T ss_dssp EESETTS
T ss_pred ccccccc
Confidence 6655543
No 344
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=82.58 E-value=4.8 Score=46.28 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=53.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec---
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS--- 191 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~--- 191 (1099)
.+|+|+|+|++|+..+-.|.++| ..++++-.+. ++++ +++- ...+.....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~--------------------~~~~----l~~~--GL~i~~~~~~~~ 53 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR--------------------RLEA----LKKK--GLRIEDEGGNFT 53 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH--------------------HHHH----HHhC--CeEEecCCCccc
Confidence 47999999999999999999999 7777653211 1222 2221 222222222
Q ss_pred -----CCChhhccCCcEEEEecCCHHHHHHHHHHHHhcC
Q 001331 192 -----KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ 225 (1099)
Q Consensus 192 -----~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~ 225 (1099)
..+.+.+..+|+||++.-+......+..+....+
T Consensus 54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~~ 92 (307)
T COG1893 54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSLAPLLG 92 (307)
T ss_pred cccccccChhhcCCCCEEEEEeccccHHHHHHHhhhcCC
Confidence 1133566789999999877666666665555444
No 345
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.56 E-value=6.3 Score=43.94 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=26.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCC--CeEEEEeC
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGV--KSVTLHDE 146 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGV--g~itlvD~ 146 (1099)
.+|.|||+|.+|..++..|...|. ..+.++|.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r 36 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP 36 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence 479999999999999999999984 35666653
No 346
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=82.55 E-value=6.1 Score=44.16 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=27.7
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCC---CeEEEEeC
Q 001331 113 FASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDE 146 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~EiaKnLvlaGV---g~itlvD~ 146 (1099)
.+.+|.|||+|-+|+.+++.|..+|+ .++.++|.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~ 38 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTP 38 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECC
Confidence 45689999999999999999999884 23666654
No 347
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=82.46 E-value=3.5 Score=48.74 Aligned_cols=77 Identities=16% Similarity=0.082 Sum_probs=52.7
Q ss_pred cCeEEEEcC-ChHHHHHHHHHHHhCCCe------EEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhC-CCc-
Q 001331 114 ASNILVSGM-QGLGAEIAKNLILAGVKS------VTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-NAV- 184 (1099)
Q Consensus 114 ~s~VlIiG~-gglG~EiaKnLvlaGVg~------itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLN-p~V- 184 (1099)
-.+|.|+|+ |.+|+.+|-.|+..|+-. +.|+|-| +.+.|++.-+.-|+..- |..
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD-----------------~~~~~a~g~a~DL~d~a~~~~~ 106 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSE-----------------RSKEALEGVAMELEDSLYPLLR 106 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccC-----------------ccchhhhHHHHHHHHhhhhhcC
Confidence 358999999 999999999999999843 6666542 33456666665555544 432
Q ss_pred EEEEEecCCChhhccCCcEEEEecC
Q 001331 185 VLSTLTSKLTKEQLSDFQAVVFTDI 209 (1099)
Q Consensus 185 ~v~~~~~~l~~~~l~~~dvVV~~~~ 209 (1099)
.+.+... +.+.+.+.|+||++..
T Consensus 107 ~v~i~~~--~y~~~kdaDIVVitAG 129 (387)
T TIGR01757 107 EVSIGID--PYEVFEDADWALLIGA 129 (387)
T ss_pred ceEEecC--CHHHhCCCCEEEECCC
Confidence 2332222 3467889999998764
No 348
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=82.42 E-value=6.1 Score=49.19 Aligned_cols=90 Identities=19% Similarity=0.299 Sum_probs=56.8
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCC
Q 001331 114 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 193 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l 193 (1099)
+.||+|+|+|.+|.++++.|...|. .++++|.|.- |+ +++++.. ..+...+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~-------------------~~----~~~~~~g----~~~i~GD~ 468 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRT-------------------RV----DELRERG----IRAVLGNA 468 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHH-------------------HH----HHHHHCC----CeEEEcCC
Confidence 5799999999999999999999997 6889886432 22 2333321 33333333
Q ss_pred C-hh-----hccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeE
Q 001331 194 T-KE-----QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 231 (1099)
Q Consensus 194 ~-~~-----~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI 231 (1099)
+ ++ -++++|.|+++..+......+-..+|+.++.++.|
T Consensus 469 ~~~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~ii 512 (558)
T PRK10669 469 ANEEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEII 512 (558)
T ss_pred CCHHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEE
Confidence 2 22 35678888777655444444444566665434333
No 349
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=82.38 E-value=2.3 Score=50.12 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=31.9
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
+...+|+|+|+|++|..+++.|...|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 567889999999999999999999999 69999864
No 350
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=82.38 E-value=6 Score=46.30 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=62.5
Q ss_pred HHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEE--EeCCcc--CcccCCcccccCCC-----------cccchHHH
Q 001331 107 ETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTL--HDEGTV--ELWDLSSNFVFSDN-----------DIGKNRAL 171 (1099)
Q Consensus 107 e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itl--vD~d~V--~~~dL~~qf~~~~~-----------diGk~Kae 171 (1099)
+.++--.+.+|.|||+||-|+-++.+|...|+..+.+ +|.|.- ...+..+-+++.++ ++|+.-++
T Consensus 10 ~~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~~~~G~~~ae 89 (349)
T TIGR00065 10 ELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADKKILIGKKLTRGLGAGGNPEIGRKAAE 89 (349)
T ss_pred hhcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcCCCCCCCCCCCCCHHHHHHHHH
Confidence 3444445678999999999999999999999875544 677653 22333333444332 12222333
Q ss_pred HHHHHHHHhCCCcEEEEEecCCChhhccCCcEEEEecC-----CHHHHHHHHHHHHhcCCCceeE
Q 001331 172 ASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDI-----SLDKAIEFDDFCHNHQPAISFI 231 (1099)
Q Consensus 172 a~~~~L~eLNp~V~v~~~~~~l~~~~l~~~dvVV~~~~-----~~~~~~~ln~~c~~~~~~ipfI 231 (1099)
...+++++ .++++|.|+++.. ..-..-.+.+++++.+ ++.+
T Consensus 90 e~~d~Ir~-----------------~le~~D~vfI~aglGGGTGSG~apvia~~ake~~--~l~v 135 (349)
T TIGR00065 90 ESRDEIRK-----------------LLEGADMVFITAGMGGGTGTGAAPVVAKIAKELG--ALTV 135 (349)
T ss_pred HHHHHHHH-----------------HHhCCCEEEEEEeccCccchhHHHHHHHHHHHcC--CCEE
Confidence 33444433 2346776665421 1122347788888877 5544
No 351
>PLN02780 ketoreductase/ oxidoreductase
Probab=82.35 E-value=4.2 Score=46.82 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=42.1
Q ss_pred cCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEE
Q 001331 511 DAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 589 (1099)
Q Consensus 511 ~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~ 589 (1099)
++.++|.| .||||.++++.|+..|. ++++++.+. .|.+.+++.+...++..++.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~------~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~ 107 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL------NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIK 107 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC------CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEE
Confidence 45788888 58999999999999998 788876421 24455566666666655655
Q ss_pred EEeccc
Q 001331 590 ALQNRV 595 (1099)
Q Consensus 590 ~~~~~v 595 (1099)
.+...+
T Consensus 108 ~~~~Dl 113 (320)
T PLN02780 108 TVVVDF 113 (320)
T ss_pred EEEEEC
Confidence 554444
No 352
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.32 E-value=4.3 Score=45.14 Aligned_cols=90 Identities=11% Similarity=0.151 Sum_probs=51.8
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 592 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 592 (1099)
+|.|||+|.+|..+++.|...|... ..+.+.|.+ ..|++.++ +..+.+.+ .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~---~~i~v~~r~-------------------~~~~~~l~----~~~~~~~~--~- 52 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADV---SEIIVSPRN-------------------AQIAARLA----ERFPKVRI--A- 52 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCh---heEEEECCC-------------------HHHHHHHH----HHcCCceE--e-
Confidence 6999999999999999999988610 223443311 12222222 22232221 1
Q ss_pred cccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEE
Q 001331 593 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLE 640 (1099)
Q Consensus 593 ~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~ 640 (1099)
.+. .+..++.|+||-|+-....+..+.......++.+|+
T Consensus 53 ----~~~-----~~~~~~aDvVilav~p~~~~~vl~~l~~~~~~~vis 91 (258)
T PRK06476 53 ----KDN-----QAVVDRSDVVFLAVRPQIAEEVLRALRFRPGQTVIS 91 (258)
T ss_pred ----CCH-----HHHHHhCCEEEEEeCHHHHHHHHHHhccCCCCEEEE
Confidence 111 234578999999998655666665543334444554
No 353
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=82.31 E-value=9.4 Score=41.44 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=49.4
Q ss_pred eEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCC--CcEEEEEecC
Q 001331 116 NILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNN--AVVLSTLTSK 192 (1099)
Q Consensus 116 ~VlIiG-~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp--~V~v~~~~~~ 192 (1099)
+|.||| +|.+|+.+++.|+..| .++++++.+. .+++...+.+...-. .+.+......
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~-------------------~~~~~l~~~~~~~~~~~g~~~~~~~~~ 61 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL-------------------EKAEEAAAKALEELGHGGSDIKVTGAD 61 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH-------------------HHHHHHHHHHHhhccccCCCceEEEeC
Confidence 699997 8999999999999999 5777776421 233333332211101 1111111111
Q ss_pred CChhhccCCcEEEEecCCHHHHHHHHHH
Q 001331 193 LTKEQLSDFQAVVFTDISLDKAIEFDDF 220 (1099)
Q Consensus 193 l~~~~l~~~dvVV~~~~~~~~~~~ln~~ 220 (1099)
..+.+...|+||+|..+......+.++
T Consensus 62 -~~ea~~~aDvVilavp~~~~~~~l~~l 88 (219)
T TIGR01915 62 -NAEAAKRADVVILAVPWDHVLKTLESL 88 (219)
T ss_pred -hHHHHhcCCEEEEECCHHHHHHHHHHH
Confidence 234577899999998765554444444
No 354
>PRK13529 malate dehydrogenase; Provisional
Probab=82.29 E-value=0.64 Score=56.75 Aligned_cols=132 Identities=15% Similarity=0.260 Sum_probs=76.8
Q ss_pred CchhhhhhhcCHHHH------------------HHHhcCcEEEEcCCcchHHHHHHHHH----cCCCCC-CCccEEEecC
Q 001331 492 SRYDAQISVFGAKLQ------------------KKLEDAKVFIVGSGALGCEFLKNVAL----MGVSCG-NQGKLTITDD 548 (1099)
Q Consensus 492 ~Rydrqi~l~G~~~q------------------~~L~~~~v~vvG~GglG~evlk~La~----~Gv~~~-~~g~i~ivD~ 548 (1099)
+||...+.+|..+.| ++|.+.||+++|||+-|.-+++.|+. .|+.-. -..+|.++|.
T Consensus 258 ~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~ 337 (563)
T PRK13529 258 ERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDR 337 (563)
T ss_pred HHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcC
Confidence 566666666655433 57889999999999999999999987 587211 1258999998
Q ss_pred CccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCC--CEEEEccC--chHHH
Q 001331 549 DVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENI--TCVINALD--NVNAR 624 (1099)
Q Consensus 549 D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~--DvVi~alD--n~~ar 624 (1099)
+-+=... | .|+...|...|.. .++....... .....+ .+.++.. |++|.+.- +.-..
T Consensus 338 ~GLl~~~--r------~~l~~~k~~fa~~----~~~~~~~~~~-----~~~~~L--~e~v~~~kPtvLIG~S~~~g~Ft~ 398 (563)
T PRK13529 338 QGLLTDD--M------PDLLDFQKPYARK----REELADWDTE-----GDVISL--LEVVRNVKPTVLIGVSGQPGAFTE 398 (563)
T ss_pred CCeEeCC--C------CcchHHHHHHhhh----cccccccccc-----cCCCCH--HHHHhccCCCEEEEecCCCCCCCH
Confidence 7542221 1 1344445444433 1210000000 000011 2334554 77777654 45556
Q ss_pred HHHHhhcccccccEEEcC
Q 001331 625 LYVDQRCLYFQKPLLESG 642 (1099)
Q Consensus 625 ~~i~~~c~~~~~Pli~sg 642 (1099)
..|..++.....|+|.+-
T Consensus 399 evv~~Ma~~~erPIIFaL 416 (563)
T PRK13529 399 EIVKEMAAHCERPIIFPL 416 (563)
T ss_pred HHHHHHHhcCCCCEEEEC
Confidence 677777777778888543
No 355
>PRK13243 glyoxylate reductase; Reviewed
Probab=82.13 E-value=3.3 Score=48.07 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=32.5
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 110 RRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 110 ~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
..|.+++|.|||+|.+|.++|+.|...|. +|..+|.
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~ 181 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSR 181 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 36899999999999999999999999997 6888875
No 356
>PLN02306 hydroxypyruvate reductase
Probab=82.12 E-value=1.6 Score=51.68 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=30.5
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHH-HcCCCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La-~~Gv~~~~~g~i~ivD~ 548 (1099)
.|.+++|.|||.|.||.++++.|. -+|+ ++..+|.
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm------~V~~~d~ 197 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM------NLIYYDL 197 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCC------EEEEECC
Confidence 488999999999999999999985 6676 7888875
No 357
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=81.98 E-value=1.7 Score=51.86 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=31.7
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
.|.+++|.|||.|.||..+++.+...|+ ++..+|.
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm------~V~~~d~ 182 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGM------RVYFYDI 182 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5788999999999999999999999888 8888884
No 358
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=81.95 E-value=3.5 Score=49.45 Aligned_cols=111 Identities=17% Similarity=0.133 Sum_probs=69.1
Q ss_pred CcEEEEcCCcchH-HHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEE
Q 001331 512 AKVFIVGSGALGC-EFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 590 (1099)
Q Consensus 512 ~~v~vvG~GglG~-evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 590 (1099)
.||.|||+|+.-. ++++.|++..-. -+.++|+++|-|. ...|++- ...+.+.+.+.++.++|++
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~-l~~~ei~L~Did~--~~rl~~v------------~~~~~~~~~~~~~~~~v~~ 65 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEE-LPVTELVLVDIDE--EEKLEIV------------GALAKRMVKKAGLPIKVHL 65 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhcccc-CCCCEEEEecCCh--HHHHHHH------------HHHHHHHHHhhCCCeEEEE
Confidence 3799999999855 677777763110 1128999999774 3333221 2345566667777788776
Q ss_pred EecccCcccccccchhhhcCCCEEEEccC--chHHHHHHHhhcccccccEEEcCcCcccce
Q 001331 591 LQNRVGPETENVFDDTFWENITCVINALD--NVNARLYVDQRCLYFQKPLLESGTLGAKCN 649 (1099)
Q Consensus 591 ~~~~v~~~~e~~~~~~~~~~~DvVi~alD--n~~ar~~i~~~c~~~~~Pli~sgt~G~~G~ 649 (1099)
...+ .+-+++.|+||+++- ..++|..-.+...++|+-- .-|.|..|-
T Consensus 66 t~d~----------~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~g--qET~G~GG~ 114 (419)
T cd05296 66 TTDR----------REALEGADFVFTQIRVGGLEARALDERIPLKHGVIG--QETTGAGGF 114 (419)
T ss_pred eCCH----------HHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCcc--ccCCCcchH
Confidence 5432 345789999999874 3355555555556665432 456666663
No 359
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=81.93 E-value=3 Score=45.84 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=46.8
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCcccccc----CCcccccccCcccch-HHHHHHHHHHhh
Q 001331 509 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSN----LSRQFLFRDWNIGQA-KSTVAASAATSI 582 (1099)
Q Consensus 509 L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sN----LnRQflf~~~diG~~-Ka~vaa~~l~~~ 582 (1099)
+.+++++|.| .|+||.++++.|+..|. +++++|.+.-.... +..++.+...|+... -.+.+.+.+.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~------~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA------RVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVER 77 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 5677899998 59999999999999998 78888865432221 122233334455433 223334444444
Q ss_pred CCCCeEEEEe
Q 001331 583 NPRLNIEALQ 592 (1099)
Q Consensus 583 np~~~i~~~~ 592 (1099)
.+.+.+..+.
T Consensus 78 ~~~id~li~~ 87 (257)
T PRK07067 78 FGGIDILFNN 87 (257)
T ss_pred cCCCCEEEEC
Confidence 4444444443
No 360
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=81.85 E-value=3.4 Score=50.25 Aligned_cols=116 Identities=14% Similarity=0.113 Sum_probs=67.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHh-CCCcEEEEEecC-C
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQEL-NNAVVLSTLTSK-L 193 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eL-Np~V~v~~~~~~-l 193 (1099)
.|.|||+|..|..+|.||+..|. +|+++|.+.-....+...+.-. . +-.-+....+..+.+ .|++-+...+.. .
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~~g-~--~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHAKG-K--KIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhccCC-C--CceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 47899999999999999999997 7999987654333332110000 0 000111122222233 355555544331 1
Q ss_pred Ch-------hhccCCcEEEEecC-CHHHHHHHHHHHHhcCCCceeEEEeecc
Q 001331 194 TK-------EQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRG 237 (1099)
Q Consensus 194 ~~-------~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G 237 (1099)
.+ ..+..=++||++.- ......+..+.+.+++ +.|+.+.+.|
T Consensus 77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~g--i~fvdapVsG 126 (467)
T TIGR00873 77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKG--ILFVGSGVSG 126 (467)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcC--CEEEcCCCCC
Confidence 11 12344478887764 4455555567788888 8899888877
No 361
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=81.84 E-value=11 Score=43.16 Aligned_cols=32 Identities=28% Similarity=0.225 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
.+|.|||+|-+|+-+|-.|+..|.+.++++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999999878999996
No 362
>PRK07478 short chain dehydrogenase; Provisional
Probab=81.79 E-value=3.1 Score=45.57 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=28.5
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 509 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 509 L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
+.+++++|.| .||||.++++.|+..|. ++++++.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~------~v~~~~r 38 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA------KVVVGAR 38 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeC
Confidence 4567899998 58999999999999997 6777764
No 363
>PRK07062 short chain dehydrogenase; Provisional
Probab=81.79 E-value=7.1 Score=43.06 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=28.9
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 112 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 112 L~~s~VlIiG~-gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
|+++.++|.|+ +|+|.++++.|+..|. ++.+++.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r 40 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGR 40 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 56788999986 6899999999999998 5777764
No 364
>PLN02240 UDP-glucose 4-epimerase
Probab=81.75 E-value=5 Score=46.28 Aligned_cols=33 Identities=24% Similarity=0.515 Sum_probs=28.5
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEec
Q 001331 509 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 547 (1099)
Q Consensus 509 L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD 547 (1099)
|++++|+|.|+ |.||..+++.|+..|. +++++|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~------~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY------KVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEe
Confidence 45689999985 9999999999999887 788876
No 365
>PRK07063 short chain dehydrogenase; Provisional
Probab=81.73 E-value=6.2 Score=43.35 Aligned_cols=35 Identities=43% Similarity=0.616 Sum_probs=29.5
Q ss_pred HhhcCeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 111 RLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 111 kL~~s~VlIiG-~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
+|.+++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r 39 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADL 39 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 46788999998 57999999999999997 5777763
No 366
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=81.66 E-value=1.4 Score=44.41 Aligned_cols=29 Identities=28% Similarity=0.618 Sum_probs=25.7
Q ss_pred EEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 514 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 514 v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
|+|+|+|++|+.++-.|++.|. ++++++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~------~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH------DVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCC------ceEEEEc
Confidence 7899999999999999999987 6777753
No 367
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=81.65 E-value=1.3 Score=51.04 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=31.2
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
+...||.|||+|.+|+.++..++..|+ ..++|+|-+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl-----~~i~LvDi~ 39 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNL-----GDVVLFDIV 39 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-----CeEEEEeCC
Confidence 345799999999999999999999998 469999853
No 368
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=81.58 E-value=5.8 Score=41.08 Aligned_cols=86 Identities=20% Similarity=0.260 Sum_probs=53.5
Q ss_pred EEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001331 514 VFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 592 (1099)
Q Consensus 514 v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 592 (1099)
|+|+|+ |.+|..+++.|...|. +++++= | . ..|.+. .+ +++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~------~V~~~~----------R-----~----~~~~~~--------~~--~~~~~~ 45 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH------EVTALV----------R-----S----PSKAED--------SP--GVEIIQ 45 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS------EEEEEE----------S-----S----GGGHHH--------CT--TEEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCCC------EEEEEe----------c-----C----chhccc--------cc--ccccce
Confidence 789997 9999999999999997 666531 2 1 112211 44 455555
Q ss_pred cccCcccccccchhhhcCCCEEEEccCc----hHHHHHHHhhccccccc
Q 001331 593 NRVGPETENVFDDTFWENITCVINALDN----VNARLYVDQRCLYFQKP 637 (1099)
Q Consensus 593 ~~v~~~~e~~~~~~~~~~~DvVi~alDn----~~ar~~i~~~c~~~~~P 637 (1099)
..+.+. +.+ .+.++++|+||+++.. ...-..+-+.|...+++
T Consensus 46 ~d~~d~-~~~--~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 46 GDLFDP-DSV--KAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp SCTTCH-HHH--HHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSS
T ss_pred eeehhh-hhh--hhhhhhcchhhhhhhhhcccccccccccccccccccc
Confidence 555432 112 3456799999999963 23334555566666654
No 369
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=81.57 E-value=6.9 Score=39.64 Aligned_cols=59 Identities=20% Similarity=0.384 Sum_probs=41.5
Q ss_pred CeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecC
Q 001331 115 SNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 192 (1099)
Q Consensus 115 s~VlIiG-~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~ 192 (1099)
+.|+|.| .+|+|.++++.|+..|-..+.++... .-..+++...+.|.+.+ .++.....+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~D 60 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIECD 60 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEESE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--ccccccccc
Confidence 3678887 88999999999999999899988764 01235555666666444 455555433
No 370
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=81.56 E-value=7.4 Score=43.52 Aligned_cols=71 Identities=21% Similarity=0.233 Sum_probs=46.9
Q ss_pred EEEEcC-ChHHHHHHHHHHHhC--C-CeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhC---CCcEEEEE
Q 001331 117 ILVSGM-QGLGAEIAKNLILAG--V-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN---NAVVLSTL 189 (1099)
Q Consensus 117 VlIiG~-gglG~EiaKnLvlaG--V-g~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLN---p~V~v~~~ 189 (1099)
|.|||+ |.+|..++..|+..| . .+|+|+|.+. .|++.....|+.+. +..+|+..
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~i~~~ 61 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE-------------------EKLKGVAMDLQDAVEPLADIKVSIT 61 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc-------------------ccchHHHHHHHHhhhhccCcEEEEC
Confidence 579999 999999999999998 4 6899998533 12223333343332 23455542
Q ss_pred ecCCChhhccCCcEEEEec
Q 001331 190 TSKLTKEQLSDFQAVVFTD 208 (1099)
Q Consensus 190 ~~~l~~~~l~~~dvVV~~~ 208 (1099)
+ ++ .+-+.+.|+||.+.
T Consensus 62 ~-d~-~~~~~~aDiVv~t~ 78 (263)
T cd00650 62 D-DP-YEAFKDADVVIITA 78 (263)
T ss_pred C-ch-HHHhCCCCEEEECC
Confidence 2 11 35678999999965
No 371
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=81.56 E-value=10 Score=43.88 Aligned_cols=95 Identities=22% Similarity=0.248 Sum_probs=0.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcE---------
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVV--------- 185 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~--------- 185 (1099)
.+|+|+|+|.+|+.+|..|..+| .+++++| |.... +.+++..-.+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~~-----------------------r~~~~-~~~~~~g~~~~~~~~~~~~~ 57 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAG-ADVTLIG-----------------------RARIG-DELRAHGLTLTDYRGRDVRV 57 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcC-CcEEEEe-----------------------cHHHH-HHHHhcCceeecCCCcceec
Q ss_pred ----EEEEecCCChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecce
Q 001331 186 ----LSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGL 238 (1099)
Q Consensus 186 ----v~~~~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 238 (1099)
+...... +.+..+|+||+|.........+.++.....+...++.. +.|+
T Consensus 58 ~~~~~~~~~~~---~~~~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~-~nG~ 110 (341)
T PRK08229 58 PPSAIAFSTDP---AALATADLVLVTVKSAATADAAAALAGHARPGAVVVSF-QNGV 110 (341)
T ss_pred ccceeEeccCh---hhccCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEe-CCCC
No 372
>PRK08655 prephenate dehydrogenase; Provisional
Probab=81.43 E-value=2.8 Score=50.61 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=55.0
Q ss_pred cEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEE
Q 001331 513 KVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 591 (1099)
Q Consensus 513 ~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 591 (1099)
+|.||| +|++|..+++.|...|. +++++|.+. .++..++. +.. + ..
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~------~V~v~~r~~-------------------~~~~~~a~---~~g--v--~~- 48 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF------EVIVTGRDP-------------------KKGKEVAK---ELG--V--EY- 48 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC------EEEEEECCh-------------------HHHHHHHH---HcC--C--ee-
Confidence 799997 89999999999999986 678877432 11111111 111 1 11
Q ss_pred ecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcc--cccccEEEcCcC
Q 001331 592 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCL--YFQKPLLESGTL 644 (1099)
Q Consensus 592 ~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~--~~~~Pli~sgt~ 644 (1099)
..+. .+...++|+||.|+-.......+.+... ..+..+++.++.
T Consensus 49 ----~~~~-----~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iViDvsSv 94 (437)
T PRK08655 49 ----ANDN-----IDAAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDVTSV 94 (437)
T ss_pred ----ccCH-----HHHhccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 1111 2345788999999876556666655543 234557777763
No 373
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=81.42 E-value=5.7 Score=48.54 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=69.3
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccch---HHHHHHHHHHhh-CCCCe
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA---KSTVAASAATSI-NPRLN 587 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~---Ka~vaa~~l~~~-np~~~ 587 (1099)
.+|-+||+|..|..+++||+..|. ++++.|.+.=....+... ...-|-. -+..+++.+..+ .|++-
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~------~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvI 76 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF------PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSV 76 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC------eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEE
Confidence 479999999999999999999998 888887642111111000 0000210 112233333332 24444
Q ss_pred EEEEecccCcccccccc--hhhhcCCCEEEEccCc-hHHHHHHHhhcccccccEEEcCcCcc
Q 001331 588 IEALQNRVGPETENVFD--DTFWENITCVINALDN-VNARLYVDQRCLYFQKPLLESGTLGA 646 (1099)
Q Consensus 588 i~~~~~~v~~~~e~~~~--~~~~~~~DvVi~alDn-~~ar~~i~~~c~~~~~Pli~sgt~G~ 646 (1099)
+..+.. ++..+.+++ ...++.=|+|||+.-. ++.-+.+.+.+...++.+++++..|.
T Consensus 77 i~~v~~--~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 77 IILVKA--GAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred EEECCC--cHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 443322 111222221 1223455788888764 34445557778888999999888875
No 374
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=81.40 E-value=8.6 Score=44.44 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=30.5
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 113 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
.+.+|+|.|+|++|..++.-+...|.+++.++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 5789999999999999999888999988888874
No 375
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=81.37 E-value=5.4 Score=43.79 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=27.4
Q ss_pred cCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 511 DAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 511 ~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
+++|+|.| .|+||.++++.|+..|. +++++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~------~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY------RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 45788998 57999999999999997 78888743
No 376
>PLN02427 UDP-apiose/xylose synthase
Probab=81.37 E-value=3.2 Score=48.90 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=28.9
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHHcC-CCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVG-SGALGCEFLKNVALMG-VSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG-~GglG~evlk~La~~G-v~~~~~g~i~ivD~ 548 (1099)
.++.++|+|.| +|-||+.+++.|+..| . +++.+|.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~------~V~~l~r 47 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPH------KVLALDV 47 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCC------EEEEEec
Confidence 45667899999 5999999999999985 4 6777774
No 377
>PLN02240 UDP-glucose 4-epimerase
Probab=81.35 E-value=10 Score=43.66 Aligned_cols=34 Identities=35% Similarity=0.528 Sum_probs=29.0
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 112 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 112 L~~s~VlIiG~-gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
|++++|+|.|. |.+|..+++.|+..|. +|+++|.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN 37 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 55789999985 8899999999999995 7888873
No 378
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=81.34 E-value=4.6 Score=44.34 Aligned_cols=26 Identities=8% Similarity=0.346 Sum_probs=23.1
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHcCC
Q 001331 510 EDAKVFIVGSGALGCEFLKNVALMGV 535 (1099)
Q Consensus 510 ~~~~v~vvG~GglG~evlk~La~~Gv 535 (1099)
.+.||.|||+|.+|..+++.|+..|.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~ 28 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSK 28 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC
Confidence 35689999999999999999998873
No 379
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=81.18 E-value=3 Score=47.74 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=47.6
Q ss_pred EEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhC----CCcEEEEEecCC
Q 001331 119 VSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN----NAVVLSTLTSKL 193 (1099)
Q Consensus 119 IiG~gglG~EiaKnLvlaGV-g~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLN----p~V~v~~~~~~l 193 (1099)
|||+|.+|+.+|-.|+..|+ .+|.|+|-. ..+++..+.-|+... ..++|.. .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~--~-- 57 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDIN-------------------KDKAEGEAMDLQHAASFLPTPKKIRS--G-- 57 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------CChhhHHHHHHHHhhcccCCCeEEec--C--
Confidence 68999999999999999997 569999841 224444444555443 3344442 2
Q ss_pred ChhhccCCcEEEEecC
Q 001331 194 TKEQLSDFQAVVFTDI 209 (1099)
Q Consensus 194 ~~~~l~~~dvVV~~~~ 209 (1099)
+.+.+++.|+||.+..
T Consensus 58 ~~~~~~daDivVitag 73 (299)
T TIGR01771 58 DYSDCKDADLVVITAG 73 (299)
T ss_pred CHHHHCCCCEEEECCC
Confidence 3467889999998764
No 380
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=81.17 E-value=1.3 Score=52.99 Aligned_cols=36 Identities=31% Similarity=0.577 Sum_probs=32.6
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
.+.+.+|+|+|+|.+|..+++.|...|+ .+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~-----~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGV-----GKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCC-----CEEEEEeC
Confidence 3778999999999999999999999998 78998864
No 381
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=81.16 E-value=6.3 Score=40.48 Aligned_cols=32 Identities=31% Similarity=0.363 Sum_probs=29.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 148 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~ 148 (1099)
+|.|+|+|..|+.+|.-|+..| .+++|+..+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccH
Confidence 6999999999999999999999 6899987654
No 382
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=81.14 E-value=6 Score=48.65 Aligned_cols=33 Identities=33% Similarity=0.337 Sum_probs=29.7
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 114 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
-++|.|||+|..|..||.+|+.+|. .++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 4679999999999999999999997 78999864
No 383
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.14 E-value=4 Score=46.61 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=31.0
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 510 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 510 ~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
..++|+|.|||.||--....+-.+|. .+|.++|..
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA-----~~VVi~d~~ 203 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGA-----SDVVITDLV 203 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCC-----CcEEEeecC
Confidence 35689999999999999998889999 899999854
No 384
>PLN02253 xanthoxin dehydrogenase
Probab=81.11 E-value=3.6 Score=45.85 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=29.5
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
++.+++++|.| +|+||.++++.|+..|. +++++|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~------~v~~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA------KVCIVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC------EEEEEeC
Confidence 35677899998 68999999999999997 7888764
No 385
>PRK06139 short chain dehydrogenase; Provisional
Probab=80.95 E-value=3.1 Score=48.16 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=29.8
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
.+.+++|+|.|+ ||||.++++.|+..|. ++++++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~------~Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA------RLVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC------EEEEEEC
Confidence 356788999996 8999999999999998 6877764
No 386
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=80.95 E-value=4.9 Score=46.56 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=80.1
Q ss_pred cccCchhhhhhhhhhHHHHHhhcCC------ccccc--eeeeeccCCCCCCCC-CCCCCCCCccCchhhhhhhcCHHHHH
Q 001331 437 AVLNPMAAMFGGIVGQEVVKACSGK------FHPLY--QFFYFDSVESLPTEP-LDSTEFKPINSRYDAQISVFGAKLQK 507 (1099)
Q Consensus 437 ~el~pvaA~iGGiaAQEVIKaiTgk------f~PI~--q~~~fD~~e~l~~~~-~~~~~~~~~~~Rydrqi~l~G~~~q~ 507 (1099)
+.+..|.+.++|.-. -.+|.++.- -.|-. -.++||..++.|..- +....+ ..-|-+.- .........
T Consensus 50 ~~~~~m~~~~~~~~~-~g~K~~~~~p~N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~l--T~~RTaa~-~~laa~~la 125 (326)
T TIGR02992 50 GEVDVKTAYVPGLDG-FAIKVSPGFFDNPKLGLPSLNGMMVLLSSRTGLLQALLLDNGYL--TDVRTAAA-GAVAARHLA 125 (326)
T ss_pred CeEEEeehhcCCCCc-eEEEEecccCCccccCCCceeEEEEEEECCCCCceEEEcCCchH--HHHHHHHH-HHHHHHHhC
Confidence 466777777776321 237766541 23333 356677766655321 111111 01111111 111111111
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHH-HcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 586 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La-~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~ 586 (1099)
+-..++++|+|+|+.|-..++.|+ ..|+ .+++|.+.+ ..|++.+++.+.+..+ +
T Consensus 126 ~~~~~~v~iiGaG~qA~~~~~al~~~~~i-----~~v~V~~R~-------------------~~~a~~~a~~~~~~~g-~ 180 (326)
T TIGR02992 126 REDSSVVAIFGAGMQARLQLEALTLVRDI-----RSARIWARD-------------------SAKAEALALQLSSLLG-I 180 (326)
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHHhCCc-----cEEEEECCC-------------------HHHHHHHHHHHHhhcC-c
Confidence 223468999999999999999997 5787 788887532 2467777777754332 3
Q ss_pred eEEEEecccCcccccccchhhhcCCCEEEEccCc
Q 001331 587 NIEALQNRVGPETENVFDDTFWENITCVINALDN 620 (1099)
Q Consensus 587 ~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn 620 (1099)
++.... +. .+.+.++|+|++|+-.
T Consensus 181 ~v~~~~-----~~-----~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 181 DVTAAT-----DP-----RAAMSGADIIVTTTPS 204 (326)
T ss_pred eEEEeC-----CH-----HHHhccCCEEEEecCC
Confidence 443321 11 2446789999999854
No 387
>PTZ00117 malate dehydrogenase; Provisional
Probab=80.92 E-value=1.5 Score=50.65 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=31.4
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 510 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 510 ~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
.+.||.|||+|.+|..++-.|++.|+ ..|.|+|-|
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~-----~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL-----GDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC-----CeEEEEECC
Confidence 46799999999999999999999998 689999854
No 388
>PRK05442 malate dehydrogenase; Provisional
Probab=80.80 E-value=2.4 Score=49.05 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=28.6
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeC
Q 001331 115 SNILVSGM-QGLGAEIAKNLILAGV-K-----SVTLHDE 146 (1099)
Q Consensus 115 s~VlIiG~-gglG~EiaKnLvlaGV-g-----~itlvD~ 146 (1099)
.+|.|+|+ |.+|+.+|-.|+..|+ + +|.|+|-
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 58999998 9999999999999887 4 6999985
No 389
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.79 E-value=2.3 Score=54.46 Aligned_cols=169 Identities=17% Similarity=0.182 Sum_probs=85.2
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCcccccc----CCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSN----LSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sN----LnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
++|.|||+|..|+.++..+|+.|. .++++|.+.=.... +.+. |-+.-.-|+.....+.+.+. +
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~------~V~l~d~~~~~l~~~~~~~~~~-l~~~~~~g~~~~~~~~~~~~------~ 380 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV------PVIMKDINQKALDLGMTEAAKL-LNKQVERGKIDGAKMAGVLS------S 380 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC------eEEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHh------C
Confidence 479999999999999999999998 99999966322111 0000 00000112211111122221 1
Q ss_pred EEEEecccCcccccccchhhhcCCCEEEEccC-chHHHHHHHhhcccccc--cEEEcCcCcccce-eEEEeCcccccCCC
Q 001331 588 IEALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGA 663 (1099)
Q Consensus 588 i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alD-n~~ar~~i~~~c~~~~~--Pli~sgt~G~~G~-~~v~ip~~t~cy~c 663 (1099)
|+... + + +-++++|+||.|+- +.+.++.+-...-..-. .++-+-|.+..=. ..-..++-..+.+.
T Consensus 381 i~~~~--------~-~--~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~ 449 (715)
T PRK11730 381 IRPTL--------D-Y--AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGM 449 (715)
T ss_pred eEEeC--------C-H--HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEE
Confidence 22111 1 1 22589999999964 66777654444333222 2444444432100 00001111112222
Q ss_pred C-CCCCCCCCCcccccCCCCCcchhHHHHHHHhhhhccCChhhh
Q 001331 664 S-RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 706 (1099)
Q Consensus 664 ~-~~p~~~~~p~Ct~~~~P~~~~Hci~wAr~~F~~lF~~~~~~~ 706 (1099)
+ -.|+. ..|+.-+-.-|...+.+++++.+++. -.++.|-.+
T Consensus 450 Hff~P~~-~~~lVEvv~g~~T~~~~~~~~~~~~~-~lgk~pv~v 491 (715)
T PRK11730 450 HFFNPVH-RMPLVEVIRGEKTSDETIATVVAYAS-KMGKTPIVV 491 (715)
T ss_pred ecCCccc-ccceEEeeCCCCCCHHHHHHHHHHHH-HhCCceEEe
Confidence 1 12322 33454455566777888888888665 446666544
No 390
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=80.77 E-value=4.1 Score=46.19 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=27.1
Q ss_pred cEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 513 KVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 513 ~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
+|+|.| +|.||..+++.|+..|. +++++|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~------~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE------EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC------EEEEEEec
Confidence 689998 59999999999999996 78888754
No 391
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.71 E-value=5.3 Score=43.21 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=27.7
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEe-c
Q 001331 509 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTIT-D 547 (1099)
Q Consensus 509 L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~iv-D 547 (1099)
|.+++++|+| .|+||.++++.|+..|. +++++ +
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~------~v~~~~~ 37 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGA------KVVIAYD 37 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEcC
Confidence 5677899998 59999999999999998 55555 5
No 392
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.62 E-value=3.8 Score=47.13 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=48.3
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCC
Q 001331 116 NILVSGM-QGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 193 (1099)
Q Consensus 116 ~VlIiG~-gglG~EiaKnLvlaGV-g~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l 193 (1099)
+|.|||+ |.+|+.+|-.|+..|+ .++.|+|-. |++.-+--|+.-.+.+++......-
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~---------------------~a~g~alDL~~~~~~~~i~~~~~~~ 60 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV---------------------NTPGVAADLSHINTPAKVTGYLGPE 60 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC---------------------ccceeehHhHhCCCcceEEEecCCC
Confidence 7999999 9999999999999997 689999964 1111112233332445665431110
Q ss_pred -ChhhccCCcEEEEecC
Q 001331 194 -TKEQLSDFQAVVFTDI 209 (1099)
Q Consensus 194 -~~~~l~~~dvVV~~~~ 209 (1099)
..+.+++.|+||.|..
T Consensus 61 ~~y~~~~daDivvitaG 77 (310)
T cd01337 61 ELKKALKGADVVVIPAG 77 (310)
T ss_pred chHHhcCCCCEEEEeCC
Confidence 1356889999998754
No 393
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.62 E-value=12 Score=42.20 Aligned_cols=80 Identities=9% Similarity=0.092 Sum_probs=49.5
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 114 ASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLvlaGV---g~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
+.+|.+||+|-+|..++++|+..|. ..|.++|.+ ..++ +.+.+.. .+. ...
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~-------------------~~~~----~~l~~~~-g~~--~~~ 55 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN-------------------VSNL----KNASDKY-GIT--ITT 55 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC-------------------HHHH----HHHHHhc-CcE--EeC
Confidence 4589999999999999999999985 346665531 1122 2232211 232 221
Q ss_pred cCCChhhccCCcEEEEecCCHHHHHHHHHHH
Q 001331 191 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFC 221 (1099)
Q Consensus 191 ~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c 221 (1099)
+ ..+.+.+.|+||+|..+......+.++.
T Consensus 56 -~-~~e~~~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 56 -N-NNEVANSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred -C-cHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence 1 2245678899999988755444454443
No 394
>PRK05866 short chain dehydrogenase; Provisional
Probab=80.56 E-value=3.5 Score=46.72 Aligned_cols=34 Identities=15% Similarity=0.329 Sum_probs=28.8
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 509 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 509 L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
+.+++|+|.|+ ||||.++++.|+..|. +++++|.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~------~Vi~~~R 72 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA------TVVAVAR 72 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEEC
Confidence 45678999984 9999999999999997 7777764
No 395
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=80.51 E-value=3.6 Score=46.00 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=28.6
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 510 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 510 ~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
++.+|.|||+|.+|+.+++.|...|... ..+++++|.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~--~~~i~~~~~ 38 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIG--KENIYYHTP 38 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCC--cceEEEECC
Confidence 4568999999999999999999988521 124777664
No 396
>PRK06141 ornithine cyclodeaminase; Validated
Probab=80.49 E-value=4.1 Score=46.92 Aligned_cols=142 Identities=21% Similarity=0.260 Sum_probs=81.1
Q ss_pred cccCchhhhhhh-hhhHHHHHhhcC------Cccccce--eeeeccCCCCCCCCCCCCCCCCccCchhhhhhhcCHHHHH
Q 001331 437 AVLNPMAAMFGG-IVGQEVVKACSG------KFHPLYQ--FFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQK 507 (1099)
Q Consensus 437 ~el~pvaA~iGG-iaAQEVIKaiTg------kf~PI~q--~~~fD~~e~l~~~~~~~~~~~~~~~Rydrqi~l~G~~~q~ 507 (1099)
+.+..|.+.+++ ++ .+|.++. +--|-.+ .++||.-++.|..-++...+. .-|-.. ....+.+...
T Consensus 48 ~~~~~mp~~~~~~~~---g~K~~~~~p~N~~~glp~~~g~v~l~d~~tG~p~ai~d~~~lT--~~RTaa-~sala~~~La 121 (314)
T PRK06141 48 ATLLLMPAWNEGRYI---GVKAVTVFPGNPARGLPGLHSTYLLFDGRTGEPLALVDGTELT--ARRTAA-ASALAASYLA 121 (314)
T ss_pred ceEEEeeeecCCCee---EEEEEeecCCCCcCCCCceEEEEEEEECCCCCEEEEEcCcchh--cchhHH-HHHHHHHHhC
Confidence 455666666643 33 3887663 2334433 667888777664322211110 012111 1112333334
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHH-cCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 586 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~-~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~ 586 (1099)
+...++|+|+|+|+.|..+++.+.+ .|+ .+|+|.+.+ ..|++.+++.+.+.. .
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~-----~~V~V~~Rs-------------------~~~a~~~a~~~~~~g--~ 175 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPI-----KQVRVWGRD-------------------PAKAEALAAELRAQG--F 175 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCC-----CEEEEEcCC-------------------HHHHHHHHHHHHhcC--C
Confidence 4457899999999999999997776 576 788887522 456777777765532 2
Q ss_pred eEEEEecccCcccccccchhhhcCCCEEEEccCc
Q 001331 587 NIEALQNRVGPETENVFDDTFWENITCVINALDN 620 (1099)
Q Consensus 587 ~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn 620 (1099)
.+.... + . .+...++|+|++|+..
T Consensus 176 ~~~~~~-----~---~--~~av~~aDIVi~aT~s 199 (314)
T PRK06141 176 DAEVVT-----D---L--EAAVRQADIISCATLS 199 (314)
T ss_pred ceEEeC-----C---H--HHHHhcCCEEEEeeCC
Confidence 233221 1 1 2346899999999873
No 397
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=80.41 E-value=5.4 Score=48.13 Aligned_cols=33 Identities=15% Similarity=0.399 Sum_probs=28.3
Q ss_pred cCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 511 DAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 511 ~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
..||+|.| +|-||+.+++.|...|. +++++|.+
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~------~V~~ldr~ 153 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD------EVIVIDNF 153 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 34899998 69999999999999997 78888754
No 398
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=80.28 E-value=8.2 Score=46.60 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=63.5
Q ss_pred cCeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecC
Q 001331 114 ASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 192 (1099)
Q Consensus 114 ~s~VlIiG-~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~ 192 (1099)
..+|+|.| .|-+|+.+++.|...|. +|+.+|....... .+. ..+.. ++ .++....+
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~~~~~~---------------~~~----~~~~~-~~--~~~~~~~D 176 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNFFTGRK---------------ENL----VHLFG-NP--RFELIRHD 176 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCccH---------------hHh----hhhcc-CC--ceEEEECc
Confidence 45899998 57899999999999996 7888874321000 000 01111 22 33444444
Q ss_pred CChhhccCCcEEEEecC---------CH--------HHHHHHHHHHHhcCCCceeEEEeecceeEE
Q 001331 193 LTKEQLSDFQAVVFTDI---------SL--------DKAIEFDDFCHNHQPAISFIKAEVRGLFGS 241 (1099)
Q Consensus 193 l~~~~l~~~dvVV~~~~---------~~--------~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~ 241 (1099)
+.+..+.++|+||-+.. +. .....+-+.|++++ +.||.+++.+.||.
T Consensus 177 i~~~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g--~r~V~~SS~~VYg~ 240 (436)
T PLN02166 177 VVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--ARFLLTSTSEVYGD 240 (436)
T ss_pred cccccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECcHHHhCC
Confidence 44445667898885432 11 11245667899998 78999988877763
No 399
>PRK08251 short chain dehydrogenase; Provisional
Probab=80.28 E-value=9.2 Score=41.56 Aligned_cols=60 Identities=22% Similarity=0.332 Sum_probs=42.7
Q ss_pred cCeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecC
Q 001331 114 ASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 192 (1099)
Q Consensus 114 ~s~VlIiG-~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~ 192 (1099)
+.+|+|.| .||+|.++++.|+..|. ++++++.+. .+.+.+...+.+.+|...+.....+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 46788887 88999999999999995 687776531 2344555566666776666665554
Q ss_pred C
Q 001331 193 L 193 (1099)
Q Consensus 193 l 193 (1099)
+
T Consensus 62 ~ 62 (248)
T PRK08251 62 V 62 (248)
T ss_pred C
Confidence 4
No 400
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=80.28 E-value=7.8 Score=38.67 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=46.5
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEE
Q 001331 510 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 589 (1099)
Q Consensus 510 ~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~ 589 (1099)
.+.||.|||+|-+|..+++.|...|. .|.-+ +.. +...++++...-+...+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~------~v~~v---------------~sr-------s~~sa~~a~~~~~~~~~~ 60 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH------EVVGV---------------YSR-------SPASAERAAAFIGAGAIL 60 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS------EEEEE---------------SSC-------HH-HHHHHHC--TT----
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC------eEEEE---------------EeC-------Cccccccccccccccccc
Confidence 34599999999999999999999998 33322 111 112333343434432221
Q ss_pred EEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhccc
Q 001331 590 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY 633 (1099)
Q Consensus 590 ~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~ 633 (1099)
. . .+.....|+||-|+-+-........++..
T Consensus 61 ~-----------~--~~~~~~aDlv~iavpDdaI~~va~~La~~ 91 (127)
T PF10727_consen 61 D-----------L--EEILRDADLVFIAVPDDAIAEVAEQLAQY 91 (127)
T ss_dssp ------------T--TGGGCC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred c-----------c--ccccccCCEEEEEechHHHHHHHHHHHHh
Confidence 1 0 24467899999998766666666666654
No 401
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=80.20 E-value=2.4 Score=47.84 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=30.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
.+|+|+|+||.+..++-.|...|+++|+|++.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 58999999999999999999999999999985
No 402
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=80.07 E-value=2.4 Score=44.29 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.5
Q ss_pred HhhcCeEEEEcCChH-HHHHHHHHHHhCCCeEEEEeC
Q 001331 111 RLFASNILVSGMQGL-GAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 111 kL~~s~VlIiG~ggl-G~EiaKnLvlaGVg~itlvD~ 146 (1099)
.|.+++|+|+|.|.+ |..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 578999999999985 8889999999999 6999885
No 403
>PRK07340 ornithine cyclodeaminase; Validated
Probab=80.05 E-value=2.7 Score=48.21 Aligned_cols=141 Identities=18% Similarity=0.238 Sum_probs=78.3
Q ss_pred cccCchhhhhhhhhhHHHHHhhcC------Cccccce--eeeeccCCCCCCCCCCCCCCCCccCchhhhhhhcCHHHHHH
Q 001331 437 AVLNPMAAMFGGIVGQEVVKACSG------KFHPLYQ--FFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKK 508 (1099)
Q Consensus 437 ~el~pvaA~iGGiaAQEVIKaiTg------kf~PI~q--~~~fD~~e~l~~~~~~~~~~~~~~~Rydrqi~l~G~~~q~~ 508 (1099)
+.+..|.|..+++. .+|.++. +--|-.| .++||.-++.|..-++...+. .-|- .-..-.+.....+
T Consensus 49 ~~~~~mpa~~~~~~---g~K~~~~~p~N~~~glp~~~g~i~l~d~~tG~p~a~~d~~~lT--~~RT-aA~sala~~~La~ 122 (304)
T PRK07340 49 GVLLSMPASAADLA---ITKLVTVCPGNAARGLPTIQGEVVVADAATGERLFLLDGPTVT--GRRT-AAVSLLAARTLAP 122 (304)
T ss_pred CEEEEEeeccCCcc---EEEEEEeCCCCccCCCCcceEEEEEEECCCCcEEEEEcChhHH--HHHH-HHHHHHHHHHhCC
Confidence 34555555555543 3776652 1122222 566777766654222211110 0010 0001122333334
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHH-cCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~-~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
...++++|+|+|+.|...++.|+. .|+ .++.|.|.+ ..|++.+++.+.+... .
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~-----~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~ 176 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPV-----RRVWVRGRT-------------------AASAAAFCAHARALGP--T 176 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC-----CEEEEEcCC-------------------HHHHHHHHHHHHhcCC--e
Confidence 456899999999999999999975 677 678877533 4567777777765432 2
Q ss_pred EEEEecccCcccccccchhhhcCCCEEEEccCc
Q 001331 588 IEALQNRVGPETENVFDDTFWENITCVINALDN 620 (1099)
Q Consensus 588 i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn 620 (1099)
+. . .+. ++...++|+|++|+-.
T Consensus 177 ~~-~-----~~~-----~~av~~aDiVitaT~s 198 (304)
T PRK07340 177 AE-P-----LDG-----EAIPEAVDLVVTATTS 198 (304)
T ss_pred eE-E-----CCH-----HHHhhcCCEEEEccCC
Confidence 22 1 111 2346799999999854
No 404
>PRK06057 short chain dehydrogenase; Provisional
Probab=80.02 E-value=2.6 Score=46.26 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=31.2
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 508 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 508 ~L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
++.+++|+|+|+ |+||..+++.|+..|. +++++|.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~------~v~~~~r~ 40 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA------TVVVGDID 40 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC------EEEEEeCC
Confidence 367789999996 9999999999999997 78888754
No 405
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=79.99 E-value=3.4 Score=41.22 Aligned_cols=81 Identities=21% Similarity=0.142 Sum_probs=45.1
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecC
Q 001331 113 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 192 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~ 192 (1099)
...+|.|||+|-+|..+++.|..+|. .|.-+- +|..+..+++.++-+...+..
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~----------------------srs~~sa~~a~~~~~~~~~~~---- 61 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH-EVVGVY----------------------SRSPASAERAAAFIGAGAILD---- 61 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS-EEEEES----------------------SCHH-HHHHHHC--TT---------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC-eEEEEE----------------------eCCcccccccccccccccccc----
Confidence 45689999999999999999999996 343221 133345566666655543332
Q ss_pred CChhhccCCcEEEEecCCHHHHHHHHHHH
Q 001331 193 LTKEQLSDFQAVVFTDISLDKAIEFDDFC 221 (1099)
Q Consensus 193 l~~~~l~~~dvVV~~~~~~~~~~~ln~~c 221 (1099)
..+.+...|+|+++..+........+++
T Consensus 62 -~~~~~~~aDlv~iavpDdaI~~va~~La 89 (127)
T PF10727_consen 62 -LEEILRDADLVFIAVPDDAIAEVAEQLA 89 (127)
T ss_dssp -TTGGGCC-SEEEE-S-CCHHHHHHHHHH
T ss_pred -cccccccCCEEEEEechHHHHHHHHHHH
Confidence 2356778999999876544333333333
No 406
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=79.99 E-value=1.7 Score=49.27 Aligned_cols=31 Identities=32% Similarity=0.498 Sum_probs=28.1
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
+|+|+|+|++|+.++..|+..|. +++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~------~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH------DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC------eEEEEECC
Confidence 79999999999999999999986 78998853
No 407
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=79.98 E-value=5.4 Score=45.45 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=63.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCC-C
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL-T 194 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l-~ 194 (1099)
+|.+||+|-+|..++.+|+.+|. .++++|.+.- ...+ . +.|-..+....+-+ -..++-+......- .
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~~-~~~~-----~---~~g~~~~~s~~~~~--~~advVi~~v~~~~~v 69 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGPV-ADEL-----L---SLGAVSVETARQVT--EASDIIFIMVPDTPQV 69 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCHh-HHHH-----H---HcCCeecCCHHHHH--hcCCEEEEeCCChHHH
Confidence 69999999999999999999996 7888886531 1111 1 12221221111111 13344444444321 0
Q ss_pred hh-------h---ccCCcEEEEe-cCCHHHHHHHHHHHHhcCCCceeEEEeecc
Q 001331 195 KE-------Q---LSDFQAVVFT-DISLDKAIEFDDFCHNHQPAISFIKAEVRG 237 (1099)
Q Consensus 195 ~~-------~---l~~~dvVV~~-~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G 237 (1099)
.+ . +..=.+||++ +.+.....++.+.+.+++ +.|+.+-+.|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G--~~~vdaPVsG 121 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELG--GDYLDAPVSG 121 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcC--CCEEEecCCC
Confidence 11 1 1122456654 457777788889999998 8888876555
No 408
>PRK12939 short chain dehydrogenase; Provisional
Probab=79.93 E-value=3.9 Score=44.41 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=27.9
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEec
Q 001331 509 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 547 (1099)
Q Consensus 509 L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD 547 (1099)
+.+++++|.|+ |+||.++++.|+..|. ++++++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~------~v~~~~ 38 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA------TVAFND 38 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC------EEEEEe
Confidence 45688999984 9999999999999997 677664
No 409
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=79.92 E-value=5.3 Score=48.18 Aligned_cols=106 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred cEEEEcCCcchH-HHHHHHHHc--CCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEE
Q 001331 513 KVFIVGSGALGC-EFLKNVALM--GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 589 (1099)
Q Consensus 513 ~v~vvG~GglG~-evlk~La~~--Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~ 589 (1099)
||.|||+|+.=+ ++++.|+.. .. +.++|+++| |+...|.+ =...+.+.+.+.++.++|+
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l---~~~ei~L~D---Id~~rl~~------------v~~l~~~~~~~~g~~~~v~ 63 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDF---PLRELVLYD---IDAERQEK------------VAEAVKILFKENYPEIKFV 63 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccC---CCCEEEEEC---CCHHHHHH------------HHHHHHHHHHhhCCCeEEE
Q ss_pred EEecccCcccccccchhhhcCCCEEEEcc--CchHHHHHHHhhcccccccEEEcCcCcccc
Q 001331 590 ALQNRVGPETENVFDDTFWENITCVINAL--DNVNARLYVDQRCLYFQKPLLESGTLGAKC 648 (1099)
Q Consensus 590 ~~~~~v~~~~e~~~~~~~~~~~DvVi~al--Dn~~ar~~i~~~c~~~~~Pli~sgt~G~~G 648 (1099)
+...+ ++-+++.|+||+++ ...++|..-.+.+.++|+ +-.-|.|..|
T Consensus 64 ~Ttdr----------~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG 112 (437)
T cd05298 64 YTTDP----------EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGG 112 (437)
T ss_pred EECCH----------HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHH
No 410
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=79.92 E-value=4.9 Score=46.19 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=21.9
Q ss_pred CcEEEEcCCcchHHHHHHHHHcC
Q 001331 512 AKVFIVGSGALGCEFLKNVALMG 534 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~G 534 (1099)
.||+|+|+||+||.++-.|++.|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 48999999999999999999999
No 411
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.92 E-value=3.4 Score=51.95 Aligned_cols=90 Identities=11% Similarity=0.155 Sum_probs=62.2
Q ss_pred cCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEE
Q 001331 511 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 590 (1099)
Q Consensus 511 ~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 590 (1099)
+.+|+|+|+|.+|..+++.|...|+ .++++|.|.- +++ .+++. + ...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~-------------------~v~----~~~~~--g--~~v 446 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM------RITVLERDIS-------------------AVN----LMRKY--G--YKV 446 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC------CEEEEECCHH-------------------HHH----HHHhC--C--CeE
Confidence 4689999999999999999999998 8999998752 111 22221 1 223
Q ss_pred EecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhccccc
Q 001331 591 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQ 635 (1099)
Q Consensus 591 ~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~ 635 (1099)
+..+.+. ++.+...-.+++|.||.++||.+.-..+-..++++.
T Consensus 447 ~~GDat~--~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 447 YYGDATQ--LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred EEeeCCC--HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 3333332 223333445789999999999988888877777653
No 412
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=79.89 E-value=13 Score=42.69 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=29.4
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhC-CCeEEEEeCC
Q 001331 112 LFASNILVSGM-QGLGAEIAKNLILAG-VKSVTLHDEG 147 (1099)
Q Consensus 112 L~~s~VlIiG~-gglG~EiaKnLvlaG-Vg~itlvD~d 147 (1099)
|++.+|||.|. |++|..+++.|+..| ..+|+++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 35678999985 889999999999987 4578888743
No 413
>PRK07576 short chain dehydrogenase; Provisional
Probab=79.89 E-value=6 Score=43.87 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=32.7
Q ss_pred HHHHhhcCeEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 108 TMRRLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 108 ~q~kL~~s~VlIiG~-gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
++.+|.+.+|+|.|. ||+|.++++.|+..|. +|.++|.+
T Consensus 3 ~~~~~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~ 42 (264)
T PRK07576 3 TMFDFAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRS 42 (264)
T ss_pred ccccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 456788899999986 8999999999999997 58887753
No 414
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=79.88 E-value=2.5 Score=54.09 Aligned_cols=168 Identities=14% Similarity=0.152 Sum_probs=86.9
Q ss_pred CcEEEEcCCcchHHHHHHHH-HcCCCCCCCccEEEecCCccccccCCccc--c---c-ccCcccchHHHHHHHHHHhhCC
Q 001331 512 AKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQF--L---F-RDWNIGQAKSTVAASAATSINP 584 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La-~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQf--l---f-~~~diG~~Ka~vaa~~l~~~np 584 (1099)
++|.|||+|-.|+.++..+| +.|+ .++++|.+.= -|.|-. + + +...-|+.......+.+.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~------~V~l~d~~~~---~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---- 371 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI------PVRIKDINPQ---GINNALKYAWKLLDKGVKRRHMTPAERDNQMA---- 371 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC------eEEEEeCCHH---HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHc----
Confidence 47999999999999999998 5898 8999997631 111100 0 0 000001100011111110
Q ss_pred CCeEEEEecccCcccccccchhhhcCCCEEEEccC-chHHHHHHHhhcccccc--cEEEcCcCcccce-eEEEeCccccc
Q 001331 585 RLNIEALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTEN 660 (1099)
Q Consensus 585 ~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alD-n~~ar~~i~~~c~~~~~--Pli~sgt~G~~G~-~~v~ip~~t~c 660 (1099)
+|+... + + +-++++|+||.|+- +.+.++.+-......-. .++-+-|.+..-. ..-...+-..+
T Consensus 372 --~i~~~~--------~-~--~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ 438 (699)
T TIGR02440 372 --LITGTT--------D-Y--RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENV 438 (699)
T ss_pred --CeEEeC--------C-h--HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccE
Confidence 222111 1 1 23589999999974 56667654444333322 2444444442111 00001111122
Q ss_pred CCCCCCCCCCCCCcccccCCCCCcchhHHHHHHHhhhhccCChhhh
Q 001331 661 YGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 706 (1099)
Q Consensus 661 y~c~~~p~~~~~p~Ct~~~~P~~~~Hci~wAr~~F~~lF~~~~~~~ 706 (1099)
...+.-.|....|+.-+-.-|...+.+++++.+++.. .++.|-.+
T Consensus 439 ~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~-~gk~pv~v 483 (699)
T TIGR02440 439 IGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKK-QGKTPIVV 483 (699)
T ss_pred EEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHH-cCCeEEEE
Confidence 2222222223446666667788889999999987665 57766544
No 415
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=79.83 E-value=6.8 Score=44.65 Aligned_cols=82 Identities=15% Similarity=0.061 Sum_probs=52.5
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecC
Q 001331 113 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 192 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~ 192 (1099)
...+|+|+|+|++|...+.-+...|...+.++|.+.- |.+.+.. ..-+|+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~-------------------rl~~a~~-~~~i~~~--------- 194 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPR-------------------RRDGATG-YEVLDPE--------- 194 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH-------------------HHHhhhh-ccccChh---------
Confidence 4568999999999999998888899988877764211 1111110 0011211
Q ss_pred CChhhccCCcEEEEecCCHHHHHHHHHHHHhcC
Q 001331 193 LTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ 225 (1099)
Q Consensus 193 l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~ 225 (1099)
.+.-.++|+|+.|..........-+.++..+
T Consensus 195 --~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~G 225 (308)
T TIGR01202 195 --KDPRRDYRAIYDASGDPSLIDTLVRRLAKGG 225 (308)
T ss_pred --hccCCCCCEEEECCCCHHHHHHHHHhhhcCc
Confidence 0012368999999987665556667777777
No 416
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=79.81 E-value=0.99 Score=55.13 Aligned_cols=128 Identities=15% Similarity=0.251 Sum_probs=73.8
Q ss_pred CchhhhhhhcCHHHH------------------HHHhcCcEEEEcCCcchHHHHHHHHH----cCCCCCC-CccEEEecC
Q 001331 492 SRYDAQISVFGAKLQ------------------KKLEDAKVFIVGSGALGCEFLKNVAL----MGVSCGN-QGKLTITDD 548 (1099)
Q Consensus 492 ~Rydrqi~l~G~~~q------------------~~L~~~~v~vvG~GglG~evlk~La~----~Gv~~~~-~g~i~ivD~ 548 (1099)
+||...+.+|..+.| ++|.+.+|+++|+|+-|.-+++.|+. .|+.-.+ ..+|.++|.
T Consensus 260 ~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~ 339 (559)
T PTZ00317 260 ERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDS 339 (559)
T ss_pred HHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcC
Confidence 567666777765544 57889999999999999999999884 7872211 258999997
Q ss_pred CccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEEEecccCcccccccchhhhcCC--CEEEEccC--chHHH
Q 001331 549 DVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENI--TCVINALD--NVNAR 624 (1099)
Q Consensus 549 D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~e~~~~~~~~~~~--DvVi~alD--n~~ar 624 (1099)
+-+-... | .+++...|..-|.. .++. . .... ..+ .+.++.. |++|.+.- +.=+.
T Consensus 340 ~GLl~~~--r-----~~~l~~~k~~fa~~----~~~~-~----~~~~----~~L--~e~v~~~KPtvLIG~S~~~g~Ft~ 397 (559)
T PTZ00317 340 KGLVTTT--R-----GDKLAKHKVPFART----DISA-E----DSSL----KTL--EDVVRFVKPTALLGLSGVGGVFTE 397 (559)
T ss_pred CCeEeCC--C-----CccccHHHHHHhcc----cccc-c----cccC----CCH--HHHHhccCCCEEEEecCCCCCCCH
Confidence 7542221 1 11133334333332 1100 0 0000 011 2334444 77776553 44555
Q ss_pred HHHHhhcccccccEEEc
Q 001331 625 LYVDQRCLYFQKPLLES 641 (1099)
Q Consensus 625 ~~i~~~c~~~~~Pli~s 641 (1099)
..|..++.....|+|.+
T Consensus 398 evv~~Ma~~~~rPIIFa 414 (559)
T PTZ00317 398 EVVKTMASNVERPIIFP 414 (559)
T ss_pred HHHHHHHhcCCCCEEEE
Confidence 67777777777888743
No 417
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.76 E-value=7.5 Score=44.51 Aligned_cols=104 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEE------
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLST------ 188 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~------ 188 (1099)
.+|.|+|+|-+|+.+|.+|...|. +|+++|.+.- +.+.+..++...-....-..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~~-------------------~~~~~~~~~~~~l~~l~~~g~~~~~~ 62 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADPA-------------------AAAAAPAYIAGRLEDLAAFDLLDGEA 62 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCHH-------------------HHHHHHHHHHHHHHHHHHcCCCchhh
Q ss_pred --------EecCCChhhccCCcEEEEecC-CHHHHHHHHHHHHhcCCCceeEEEeecce
Q 001331 189 --------LTSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGL 238 (1099)
Q Consensus 189 --------~~~~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 238 (1099)
....--.+.+.+.|+|+.|.. +.+....+-..+.+..++-.+|.+.+.+.
T Consensus 63 ~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~ 121 (308)
T PRK06129 63 PDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSAL 121 (308)
T ss_pred HHHHhcCeEEECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCC
No 418
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=79.72 E-value=1.6 Score=50.02 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=29.5
Q ss_pred cCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc
Q 001331 511 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550 (1099)
Q Consensus 511 ~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~ 550 (1099)
+.+|+|||+|++|+.++..|+..|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~------~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF------DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC------eEEEEEeCC
Confidence 3689999999999999999999996 778877654
No 419
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=79.70 E-value=2.4 Score=46.25 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=34.9
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 148 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~ 148 (1099)
.|+..+|+|.|+|.+|..+|+.|...|.+-+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 57889999999999999999999999999999998654
No 420
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.62 E-value=6.9 Score=42.46 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=30.1
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 112 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 112 L~~s~VlIiG~-gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
+++++|+|.|+ |++|.++++.|+..|.. +++++..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 56789999985 78999999999999985 8888754
No 421
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=79.59 E-value=4.2 Score=45.68 Aligned_cols=97 Identities=19% Similarity=0.150 Sum_probs=0.0
Q ss_pred cEEEEc-CCcchHHHHHHHHH-cCCCCCCCccEEEec-CCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEE
Q 001331 513 KVFIVG-SGALGCEFLKNVAL-MGVSCGNQGKLTITD-DDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 589 (1099)
Q Consensus 513 ~v~vvG-~GglG~evlk~La~-~Gv~~~~~g~i~ivD-~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~ 589 (1099)
||.|+| +|.+|..+++.+.. -++ --+-++| .+.-.. ...+++........+.+.
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~-----elvav~d~~~~~~~------------------~~~~~~~~~~~~~gv~~~ 59 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGL-----QLVAAFERHGSSLQ------------------GTDAGELAGIGKVGVPVT 59 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCC-----EEEEEEecCCcccc------------------CCCHHHhcCcCcCCceee
Q ss_pred EEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcCcc
Q 001331 590 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGA 646 (1099)
Q Consensus 590 ~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~G~ 646 (1099)
.-. ++....+|+||+++ .+.+...+-..|.++++|+| +|+.|+
T Consensus 60 ~d~------------~~l~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vV-igttg~ 102 (266)
T TIGR00036 60 DDL------------EAVETDPDVLIDFT-TPEGVLNHLKFALEHGVRLV-VGTTGF 102 (266)
T ss_pred CCH------------HHhcCCCCEEEECC-ChHHHHHHHHHHHHCCCCEE-EECCCC
No 422
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=79.58 E-value=2.3 Score=47.37 Aligned_cols=102 Identities=17% Similarity=0.130 Sum_probs=59.7
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHh----CC------CeEEEEeCCcc-CcccCCcccccCCCcccchHHHHHHHHHH
Q 001331 110 RRLFASNILVSGMQGLGAEIAKNLILA----GV------KSVTLHDEGTV-ELWDLSSNFVFSDNDIGKNRALASVQKLQ 178 (1099)
Q Consensus 110 ~kL~~s~VlIiG~gglG~EiaKnLvla----GV------g~itlvD~d~V-~~~dL~~qf~~~~~diGk~Kaea~~~~L~ 178 (1099)
++|++.+|+++|+|..|.-|++.|+.+ |+ ++|.++|.+=+ +... +|+- +.-....+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r---------~~l~----~~~~~~a~ 87 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR---------EDLN----PHKKPFAR 87 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT---------SSHS----HHHHHHHB
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC---------ccCC----hhhhhhhc
Confidence 359999999999999999999999999 99 89999998633 2221 1221 11122333
Q ss_pred HhCCCcEEEEEecCCChhhccCC--cEEEEecC--CHHHHHHHHHHHHhcCCCceeE
Q 001331 179 ELNNAVVLSTLTSKLTKEQLSDF--QAVVFTDI--SLDKAIEFDDFCHNHQPAISFI 231 (1099)
Q Consensus 179 eLNp~V~v~~~~~~l~~~~l~~~--dvVV~~~~--~~~~~~~ln~~c~~~~~~ipfI 231 (1099)
..++.-.. ..+ .+.+++. |++|.+.. ..-+...+-.++..+. -|.|
T Consensus 88 ~~~~~~~~----~~L-~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~e--rPII 137 (255)
T PF03949_consen 88 KTNPEKDW----GSL-LEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNE--RPII 137 (255)
T ss_dssp SSSTTT------SSH-HHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSS--SEEE
T ss_pred cCcccccc----cCH-HHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCC--CCEE
Confidence 44442211 111 2345566 88887652 2224445566666666 5666
No 423
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=79.58 E-value=3.1 Score=48.19 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=28.2
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHH-HcCCCCCCCccEEEec
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITD 547 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La-~~Gv~~~~~g~i~ivD 547 (1099)
.|.+++|.|||.|.||.++++.|. -.|+ ++...|
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm------~V~~~~ 176 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNM------PILYNA 176 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCC------EEEEEC
Confidence 588999999999999999999986 5555 566655
No 424
>PRK13018 cell division protein FtsZ; Provisional
Probab=79.57 E-value=12 Score=44.25 Aligned_cols=104 Identities=14% Similarity=0.249 Sum_probs=0.0
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCc--cCcccCCcccccCCC-----------cccchHHHHHHHHHH
Q 001331 114 ASNILVSGMQGLGAEIAKNLILAGVK--SVTLHDEGT--VELWDLSSNFVFSDN-----------DIGKNRALASVQKLQ 178 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLvlaGVg--~itlvD~d~--V~~~dL~~qf~~~~~-----------diGk~Kaea~~~~L~ 178 (1099)
..+|.|||+||-|+-++.+|+..|+. .+..++.|. ..........++.++ ++|+.-++...+.++
T Consensus 28 ~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~L~~~~a~~ki~iG~~~t~G~GaG~dp~~G~~aaee~~d~I~ 107 (378)
T PRK13018 28 NPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQHLAMIKADKKILIGKSLTRGLGAGGDPEVGRKAAEESRDEIK 107 (378)
T ss_pred CCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCCCcEEecCCccCCCCCCCCChHHHHHHHHHHHHHHH
Q ss_pred HhCCCcEEEEEecCCChhhccCCcEEEEecC-----CHHHHHHHHHHHHhcCCCceeEEEeec
Q 001331 179 ELNNAVVLSTLTSKLTKEQLSDFQAVVFTDI-----SLDKAIEFDDFCHNHQPAISFIKAEVR 236 (1099)
Q Consensus 179 eLNp~V~v~~~~~~l~~~~l~~~dvVV~~~~-----~~~~~~~ln~~c~~~~~~ipfI~~~~~ 236 (1099)
++ +.++|.|+++.. ..-..-.|.+++++.+ ++.+..-+.
T Consensus 108 ~~-----------------le~~D~vfI~aGLGGGTGSGaapvIa~iake~g--~ltv~vVt~ 151 (378)
T PRK13018 108 EV-----------------LKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQG--ALVVGVVTK 151 (378)
T ss_pred HH-----------------hcCCCEEEEEeeccCcchhhHHHHHHHHHHHcC--CCeEEEEEc
No 425
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=79.53 E-value=1.9 Score=49.76 Aligned_cols=86 Identities=17% Similarity=0.204 Sum_probs=53.7
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCC
Q 001331 507 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 586 (1099)
Q Consensus 507 ~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~ 586 (1099)
..+.+++|.|+|+|.||..+++.|--.| ..+. .++.++ ..+ +.+.+ .+..
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-------~~i~-------y~~r~~---------~~~--~~~~~----~~~~- 207 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-------CVIL-------YHSRTQ---------LPP--EEAYE----YYAE- 207 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-------ceee-------eecccC---------Cch--hhHHH----hccc-
Confidence 4677889999999999999999998844 2122 222111 111 11111 1111
Q ss_pred eEEEEecccCcccccccchhhhcCCC-EEEEccCchHHHHHHHhhcccccc
Q 001331 587 NIEALQNRVGPETENVFDDTFWENIT-CVINALDNVNARLYVDQRCLYFQK 636 (1099)
Q Consensus 587 ~i~~~~~~v~~~~e~~~~~~~~~~~D-vVi~alDn~~ar~~i~~~c~~~~~ 636 (1099)
.+++ ++++.+.| +|++|-.+.+++..+|+.....-+
T Consensus 208 ------------~~d~--~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk 244 (336)
T KOG0069|consen 208 ------------FVDI--EELLANSDVIVVNCPLTKETRHLINKKFIEKMK 244 (336)
T ss_pred ------------ccCH--HHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcC
Confidence 1122 57788999 466777899999999887665433
No 426
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=79.51 E-value=4.5 Score=49.01 Aligned_cols=121 Identities=20% Similarity=0.274 Sum_probs=70.8
Q ss_pred hcCeEEEEcCChHHHH-HHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 113 FASNILVSGMQGLGAE-IAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~E-iaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
...+|+|+|+|+.|.. +|+.|...|. .+++.|.... .. .+.|.+. .+.+.. .
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~~------------------~~----~~~l~~~--gi~~~~--~ 58 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKES------------------AV----TQRLLEL--GAIIFI--G 58 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCCC------------------hH----HHHHHHC--CCEEeC--C
Confidence 4568999999999999 7999999997 5788775331 01 1235443 344432 2
Q ss_pred CCChhhccCCcEEEEecC-CHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEcCCceEEEcCCCCCCcceeeccc
Q 001331 192 KLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASI 268 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~~~v~d~~ge~p~~~~i~~I 268 (1099)
..++.+.++|+||.+-. +.. ...-..+++++ +|++.-.-. .+.+.. -..-..|.=++|....+.++..|
T Consensus 59 -~~~~~~~~~d~vv~spgi~~~--~~~~~~a~~~~--i~i~~~~e~--~~~~~~-~~~~I~ITGTnGKTTTt~ll~~i 128 (461)
T PRK00421 59 -HDAENIKDADVVVYSSAIPDD--NPELVAARELG--IPVVRRAEM--LAELMR-FRTSIAVAGTHGKTTTTSLLAHV 128 (461)
T ss_pred -CCHHHCCCCCEEEECCCCCCC--CHHHHHHHHCC--CcEEeHHHH--HHHHHc-cCcEEEEECCCCHHHHHHHHHHH
Confidence 24556778999988754 222 22345667888 888742111 111110 01223445566766665555554
No 427
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=79.46 E-value=2.4 Score=49.20 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=34.7
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 148 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~ 148 (1099)
.|.+++|||||+|-+|..++++|...|+++|++.....
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 37899999999999999999999999999999987544
No 428
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.38 E-value=3.7 Score=46.26 Aligned_cols=93 Identities=8% Similarity=0.102 Sum_probs=55.1
Q ss_pred cCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEE
Q 001331 511 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 590 (1099)
Q Consensus 511 ~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 590 (1099)
..+|.+||+|.+|..+++.|+..|+. ....++++| |.. ..+++.+++ .. .+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~--~~~~v~v~~----------r~~--------~~~~~~l~~----~~-g~~~~- 56 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVV--KGEQITVSN----------RSN--------ETRLQELHQ----KY-GVKGT- 56 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCC--CcceEEEEC----------CCC--------HHHHHHHHH----hc-CceEe-
Confidence 45899999999999999999999831 112444443 110 012222222 11 12211
Q ss_pred EecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhccc--ccccEEE
Q 001331 591 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY--FQKPLLE 640 (1099)
Q Consensus 591 ~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~--~~~Pli~ 640 (1099)
.+. .+..+..|+||-|+-....+..+..+... .+..+|+
T Consensus 57 ------~~~-----~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs 97 (279)
T PRK07679 57 ------HNK-----KELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIIS 97 (279)
T ss_pred ------CCH-----HHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEE
Confidence 111 13356889999999988888877766532 3455665
No 429
>PLN02427 UDP-apiose/xylose synthase
Probab=79.35 E-value=8.7 Score=45.20 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=29.4
Q ss_pred HHhhcCeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 110 RRLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 110 ~kL~~s~VlIiG-~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
++++..+|||.| .|-+|+.+++.|+..|--+|+.+|.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 355667899999 5889999999999985336777774
No 430
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=79.34 E-value=1.2 Score=49.38 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCc----------cEEEecCC
Q 001331 507 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQG----------KLTITDDD 549 (1099)
Q Consensus 507 ~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g----------~i~ivD~D 549 (1099)
++|.+.||+++|+|+-|.-+++.|...|+ . +|+++|..
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~-----~~Gls~e~A~~~i~~vD~~ 68 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXV-----KEGISKEEACKRIWXVDRK 68 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHH-----hcCCCHHHHhccEEEECCC
No 431
>PRK08374 homoserine dehydrogenase; Provisional
Probab=79.20 E-value=4.8 Score=46.85 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=57.6
Q ss_pred CcEEEEcCCcchHHHHHHHHH--------cCCCCCCCcc-EEEecCCccccccCCcccccccCcccchHHHHHHHHHHhh
Q 001331 512 AKVFIVGSGALGCEFLKNVAL--------MGVSCGNQGK-LTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSI 582 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~--------~Gv~~~~~g~-i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~ 582 (1099)
.+|.|+|+|.+|+.+++.|.. +|+. -+ +.|.|.+ -.+|.++.+.-.+. .+...+.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~----l~VvaV~ds~---------~~~~~~~Gid~~~l---~~~~~~~ 66 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVE----LKVVSITDTS---------GTIWLPEDIDLREA---KEVKENF 66 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCC---------ccccCCCCCChHHH---HHhhhcc
Confidence 589999999999999999877 6751 12 2233422 12333333332222 2222111
Q ss_pred CCCCeEEEEecccCcccccccchhhh--cCCCEEEEccCchHHHHHHHhhcccccccEEEcC
Q 001331 583 NPRLNIEALQNRVGPETENVFDDTFW--ENITCVINALDNVNARLYVDQRCLYFQKPLLESG 642 (1099)
Q Consensus 583 np~~~i~~~~~~v~~~~e~~~~~~~~--~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sg 642 (1099)
.. +..+.........+. ++++ ...|+||+++....++.++. .|...++++|.+-
T Consensus 67 ~~---~~~~~~~~~~~~~~~--~ell~~~~~DVvVd~t~~~~a~~~~~-~al~~G~~VVtan 122 (336)
T PRK08374 67 GK---LSNWGNDYEVYNFSP--EEIVEEIDADIVVDVTNDKNAHEWHL-EALKEGKSVVTSN 122 (336)
T ss_pred Cc---hhhccccccccCCCH--HHHHhcCCCCEEEECCCcHHHHHHHH-HHHhhCCcEEECC
Confidence 11 111111000000011 2444 46899999997666655554 6777899999543
No 432
>PRK14982 acyl-ACP reductase; Provisional
Probab=79.18 E-value=1.7 Score=50.58 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=0.0
Q ss_pred hhhhhcCHHHHHHHhcCcEEEEcC-CcchHHHHHHHHHc-CCCCCCCccEEEecCC
Q 001331 496 AQISVFGAKLQKKLEDAKVFIVGS-GALGCEFLKNVALM-GVSCGNQGKLTITDDD 549 (1099)
Q Consensus 496 rqi~l~G~~~q~~L~~~~v~vvG~-GglG~evlk~La~~-Gv~~~~~g~i~ivD~D 549 (1099)
+++.+=-......|.+++|+|+|+ |.+|+++++.|+.. |+ .++++++.+
T Consensus 140 ~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv-----~~lilv~R~ 190 (340)
T PRK14982 140 RQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGV-----AELLLVARQ 190 (340)
T ss_pred HHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCC-----CEEEEEcCC
No 433
>PLN00106 malate dehydrogenase
Probab=79.14 E-value=6.9 Score=45.31 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=0.0
Q ss_pred hcCeEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 113 FASNILVSGM-QGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 113 ~~s~VlIiG~-gglG~EiaKnLvlaGV-g~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
...+|+|+|+ |.+|+.++-.|+..|+ +.+.|+|-+. ...+ +.-|...++.+.+....
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-----~~g~----------------a~Dl~~~~~~~~i~~~~ 75 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-----TPGV----------------AADVSHINTPAQVRGFL 75 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-----CCee----------------EchhhhCCcCceEEEEe
Q ss_pred cCCCh-hhccCCcEEEEe
Q 001331 191 SKLTK-EQLSDFQAVVFT 207 (1099)
Q Consensus 191 ~~l~~-~~l~~~dvVV~~ 207 (1099)
..-+. +.+.+.|+||.+
T Consensus 76 ~~~d~~~~l~~aDiVVit 93 (323)
T PLN00106 76 GDDQLGDALKGADLVIIP 93 (323)
T ss_pred CCCCHHHHcCCCCEEEEe
No 434
>PRK10537 voltage-gated potassium channel; Provisional
Probab=79.12 E-value=5.6 Score=47.31 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=31.9
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccc
Q 001331 510 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE 552 (1099)
Q Consensus 510 ~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie 552 (1099)
.+.|++|+|.|.+|.++++.|...|. .++++|.|.++
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~------~vvVId~d~~~ 275 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQ------AVTVIVPLGLE 275 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCC------CEEEEECchhh
Confidence 35789999999999999999998887 78889988553
No 435
>PRK06940 short chain dehydrogenase; Provisional
Probab=79.12 E-value=4.4 Score=45.37 Aligned_cols=32 Identities=25% Similarity=0.547 Sum_probs=26.4
Q ss_pred cCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 511 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 511 ~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
++.++|.|+||||.++++.|+ .|. +++++|.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~------~Vv~~~r~ 33 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK------KVLLADYN 33 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC------EEEEEeCC
Confidence 457888899999999999996 676 78887743
No 436
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.11 E-value=8.2 Score=42.91 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=21.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhCC
Q 001331 116 NILVSGMQGLGAEIAKNLILAGV 138 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGV 138 (1099)
+|.|||+|-+|..+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999999884
No 437
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=79.08 E-value=1.9 Score=47.03 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=33.9
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~ 550 (1099)
.|+.++|+|.|.|.+|..+++.|...|. .-+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~-----~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG-----KVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCC-----EEEEEEcCCC
Confidence 4678999999999999999999999998 7888888654
No 438
>PLN00016 RNA-binding protein; Provisional
Probab=79.05 E-value=8.3 Score=45.34 Aligned_cols=113 Identities=19% Similarity=0.308 Sum_probs=67.7
Q ss_pred HHHhhcCeEEEE----cC-ChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhC-C
Q 001331 109 MRRLFASNILVS----GM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-N 182 (1099)
Q Consensus 109 q~kL~~s~VlIi----G~-gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLN-p 182 (1099)
-.+....+|+|+ |+ |-+|..+++.|+..|. .|++++...-....+... + ..++.++- +
T Consensus 47 ~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~----------~-----~~~~~~l~~~ 110 (378)
T PLN00016 47 AAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKE----------P-----FSRFSELSSA 110 (378)
T ss_pred hcccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccC----------c-----hhhhhHhhhc
Confidence 345566789999 75 7799999999999995 788887643211111000 0 01111111 1
Q ss_pred CcEEEEEecCCCh--hhc--cCCcEEEEecC-CHHHHHHHHHHHHhcCCCc-eeEEEeecceeEE
Q 001331 183 AVVLSTLTSKLTK--EQL--SDFQAVVFTDI-SLDKAIEFDDFCHNHQPAI-SFIKAEVRGLFGS 241 (1099)
Q Consensus 183 ~V~v~~~~~~l~~--~~l--~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~i-pfI~~~~~G~~G~ 241 (1099)
. ++....++.+ +.+ .++|+||.+.. .......+-+.|++.+ + .||.+++.|.+|.
T Consensus 111 ~--v~~v~~D~~d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~g--vkr~V~~SS~~vyg~ 171 (378)
T PLN00016 111 G--VKTVWGDPADVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPG--LKQFLFCSSAGVYKK 171 (378)
T ss_pred C--ceEEEecHHHHHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcC--CCEEEEEccHhhcCC
Confidence 2 2333333322 222 36899887754 4445567778899888 6 6888888877653
No 439
>PRK07814 short chain dehydrogenase; Provisional
Probab=79.03 E-value=4.4 Score=44.77 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=29.3
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 509 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 509 L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
+.+++++|.| .|+||.++++.|+..|. +++++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~------~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA------DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 5677899998 56799999999999997 78887754
No 440
>PRK00811 spermidine synthase; Provisional
Probab=79.00 E-value=4 Score=46.28 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=52.8
Q ss_pred chhHhHhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHH
Q 001331 91 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 170 (1099)
Q Consensus 91 ~~~~~~YsRQi~l~G~e~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Ka 170 (1099)
+-++-.|.+.+.-...-... ...+||++|+|+ |.-...-|-..|+.+|+++|-|.. -+
T Consensus 56 ~~de~~Y~e~l~h~~~~~~~--~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~-------------------vv 113 (283)
T PRK00811 56 ERDEFIYHEMMTHVPLFAHP--NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDER-------------------VV 113 (283)
T ss_pred CcchhhHHHHhhhHHHhhCC--CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHH-------------------HH
Confidence 34556777765433322221 367999999874 333333334468999999986542 45
Q ss_pred HHHHHHHHHh------CCCcEEEEEecCCCh---hhccCCcEEEEe
Q 001331 171 LASVQKLQEL------NNAVVLSTLTSKLTK---EQLSDFQAVVFT 207 (1099)
Q Consensus 171 ea~~~~L~eL------Np~V~v~~~~~~l~~---~~l~~~dvVV~~ 207 (1099)
+.+.+.+.++ +|.|++ +..+... ..-..||+||+-
T Consensus 114 ~~a~~~~~~~~~~~~~d~rv~v--~~~Da~~~l~~~~~~yDvIi~D 157 (283)
T PRK00811 114 EVCRKYLPEIAGGAYDDPRVEL--VIGDGIKFVAETENSFDVIIVD 157 (283)
T ss_pred HHHHHHhHHhccccccCCceEE--EECchHHHHhhCCCcccEEEEC
Confidence 5666666654 344444 4433211 112479998864
No 441
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.98 E-value=5.5 Score=48.77 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=58.0
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecC
Q 001331 113 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 192 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~ 192 (1099)
.+.+|+|+|+|..|..+++.|...|. .+++.|... .+ .+.++++ .+.+ ....
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~-------------------~~----~~~l~~~--g~~~--~~~~ 62 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDP-------------------DA----LRPHAER--GVAT--VSTS 62 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HH----HHHHHhC--CCEE--EcCc
Confidence 57899999999999999999999996 788888421 01 1123332 2333 2222
Q ss_pred CChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEE
Q 001331 193 LTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 232 (1099)
Q Consensus 193 l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~ 232 (1099)
...+.+.++|+||.+..-.. ...+-..+++.+ ||++.
T Consensus 63 ~~~~~l~~~D~VV~SpGi~~-~~p~~~~a~~~g--i~v~~ 99 (488)
T PRK03369 63 DAVQQIADYALVVTSPGFRP-TAPVLAAAAAAG--VPIWG 99 (488)
T ss_pred chHhHhhcCCEEEECCCCCC-CCHHHHHHHHCC--CcEee
Confidence 23456778999998764111 223456678889 88884
No 442
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=78.96 E-value=0.81 Score=51.87 Aligned_cols=41 Identities=29% Similarity=0.535 Sum_probs=32.0
Q ss_pred EEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcc
Q 001331 514 VFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQ 559 (1099)
Q Consensus 514 v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQ 559 (1099)
|+|.| +|.||+|+++.|++.|. .+|+++|.|.-...++.+.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-----~~lil~d~~E~~l~~l~~~ 42 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-----KKLILFDRDENKLYELERE 42 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB------SEEEEEES-HHHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCC-----CeEEEeCCChhHHHHHHHH
Confidence 67776 78899999999999999 8999999887655555444
No 443
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=78.95 E-value=3.9 Score=46.81 Aligned_cols=107 Identities=23% Similarity=0.324 Sum_probs=0.0
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccc--------cccCCcccccccCcccchHHHHHHHHHHhhC
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE--------KSNLSRQFLFRDWNIGQAKSTVAASAATSIN 583 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie--------~sNLnRQflf~~~diG~~Ka~vaa~~l~~~n 583 (1099)
++|.|||+|-.|+-++..+|..|+ .+++.|...=. ..+|.|+. .-|+-+.+.+...+.++.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~------~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~ 72 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY------DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARIT 72 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC------ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhcc
Q ss_pred CCCeEEEEecccCcccccccchhhhcCCCEEEEccC-chHHHHHHHhhccccccc--EEEcCcCcc
Q 001331 584 PRLNIEALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQKP--LLESGTLGA 646 (1099)
Q Consensus 584 p~~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alD-n~~ar~~i~~~c~~~~~P--li~sgt~G~ 646 (1099)
+...+. -++++|+||.|+= |.+.++.+-+..-.+-+| ++-|-|.+.
T Consensus 73 ~~~~~~-----------------~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl 121 (307)
T COG1250 73 PTTDLA-----------------ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSL 121 (307)
T ss_pred ccCchh-----------------HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCC
No 444
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=78.94 E-value=4.8 Score=47.04 Aligned_cols=98 Identities=19% Similarity=0.213 Sum_probs=57.8
Q ss_pred CcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEE-EecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEE
Q 001331 512 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLT-ITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 589 (1099)
Q Consensus 512 ~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~-ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~ 589 (1099)
.||+|+|+ |.+|.++++.|...-. -++. +++.+. ..|+. +...+|.+...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~-----~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~ 52 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE-----VEITYLVSSRE---------------SAGKP--------VSEVHPHLRGL 52 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC-----ceEEEEeccch---------------hcCCC--------hHHhCcccccc
Confidence 37999998 9999999999996522 3555 545431 12221 11122322110
Q ss_pred EEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCc
Q 001331 590 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGT 643 (1099)
Q Consensus 590 ~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt 643 (1099)
. ...+.+.+ . +++.++.|+||.|+.+-.++.++..+ ...++.+||.+.
T Consensus 53 ~-~~~~~~~~--~--~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~ 100 (346)
T TIGR01850 53 V-DLNLEPID--E--EEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSA 100 (346)
T ss_pred C-CceeecCC--H--HHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCCh
Confidence 0 00111100 0 23445899999999999888888765 446888887554
No 445
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=78.94 E-value=9.6 Score=42.57 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=26.7
Q ss_pred CeEEEEcC-ChHHHHHHHHHHH-hCCCeEEEEeCCc
Q 001331 115 SNILVSGM-QGLGAEIAKNLIL-AGVKSVTLHDEGT 148 (1099)
Q Consensus 115 s~VlIiG~-gglG~EiaKnLvl-aGVg~itlvD~d~ 148 (1099)
-+|.|+|+ |.+|..+++.+.. .++.=+.++|.+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~ 37 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG 37 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 37999999 9999999998875 4666666677653
No 446
>PRK07831 short chain dehydrogenase; Provisional
Probab=78.92 E-value=9.4 Score=42.04 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=28.1
Q ss_pred hhcCeEEEEcC-C-hHHHHHHHHHHHhCCCeEEEEeC
Q 001331 112 LFASNILVSGM-Q-GLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 112 L~~s~VlIiG~-g-glG~EiaKnLvlaGVg~itlvD~ 146 (1099)
+.+.+|+|.|. | |+|..+++.|+..|. ++.++|.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~ 50 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDI 50 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeC
Confidence 44688999997 5 799999999999998 4777653
No 447
>PRK12861 malic enzyme; Reviewed
Probab=78.83 E-value=0.84 Score=58.04 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=36.3
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCcc
Q 001331 507 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 551 (1099)
Q Consensus 507 ~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~I 551 (1099)
++|.+.||++.|+|+-|..+++.|...|+. ..+|+++|..-+
T Consensus 185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~---~~~i~~~D~~Gl 226 (764)
T PRK12861 185 KSIKEVKVVTSGAGAAALACLDLLVDLGLP---VENIWVTDIEGV 226 (764)
T ss_pred CChhHcEEEEECHhHHHHHHHHHHHHcCCC---hhhEEEEcCCCe
Confidence 578899999999999999999999999992 129999997654
No 448
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=78.81 E-value=2.1 Score=48.35 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=30.0
Q ss_pred cCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 511 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 511 ~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
+++++|+|+||.+..++..|+..|+ .+|+|++.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~-----~~i~i~nR 154 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGF-----TDGTIVAR 154 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeC
Confidence 3589999999999999999999999 88999863
No 449
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=78.81 E-value=2.5 Score=47.18 Aligned_cols=117 Identities=12% Similarity=0.135 Sum_probs=68.0
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeE---EEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEe
Q 001331 114 ASNILVSGMQGLGAEIAKNLILAGVKSV---TLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 190 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLvlaGVg~i---tlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~ 190 (1099)
..||.|||||.+|..+++.|..-+...+ .+.|.+.-....+. +..++-...+.|....|++-|++-.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~----------~~~~~~~~l~~ll~~~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA----------GRVALLDGLPGLLAWRPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh----------ccCcccCCHHHHhhcCCCEEEECCC
Confidence 3589999999999999999864333223 33443321111111 1112222244555667887777654
Q ss_pred cCC----Chhhcc-CCcEEEEecC---CHHHHHHHHHHHHhcCCCceeEEEeecceeE
Q 001331 191 SKL----TKEQLS-DFQAVVFTDI---SLDKAIEFDDFCHNHQPAISFIKAEVRGLFG 240 (1099)
Q Consensus 191 ~~l----~~~~l~-~~dvVV~~~~---~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 240 (1099)
... -+..|+ +.|+||.+.. +.....+|.+.|++++..+-+-++...|+.+
T Consensus 72 ~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD~ 129 (267)
T PRK13301 72 QQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDY 129 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHHH
Confidence 332 223555 7899998754 5567778999999987444443433444433
No 450
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=78.76 E-value=6.8 Score=49.84 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=32.5
Q ss_pred HHHHHHhcCcEEEEc-CCcchHHHHHHHHHc-CCCCCCCccEEEecCC
Q 001331 504 KLQKKLEDAKVFIVG-SGALGCEFLKNVALM-GVSCGNQGKLTITDDD 549 (1099)
Q Consensus 504 ~~q~~L~~~~v~vvG-~GglG~evlk~La~~-Gv~~~~~g~i~ivD~D 549 (1099)
.....-.+++|+|.| +|-||+.+++.|+.. |. +++.+|..
T Consensus 308 ~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~------~V~~l~r~ 349 (660)
T PRK08125 308 PACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY------EVYGLDIG 349 (660)
T ss_pred chhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc------EEEEEeCC
Confidence 355667788999999 699999999999986 55 78888754
No 451
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=78.73 E-value=3.3 Score=53.01 Aligned_cols=169 Identities=16% Similarity=0.183 Sum_probs=83.7
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCcccccc----CCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSN----LSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sN----LnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
.+|.|||+|..|+.++..+|+.|+ .++++|.+.=.... +.+. +-..-+-|+...+.+.+.+.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~------~V~l~d~~~~~l~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~------ 380 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT------PIVMKDINQHSLDLGLTEAAKL-LNKQVERGRITPAKMAGVLNG------ 380 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC------eEEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHhC------
Confidence 479999999999999999999999 89999976422111 1110 000001122111112222211
Q ss_pred EEEEecccCcccccccchhhhcCCCEEEEccC-chHHHHHHHhhccccccc--EEEcCcCcccce-eEEEeCcccccCCC
Q 001331 588 IEALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQKP--LLESGTLGAKCN-TQMVIPHLTENYGA 663 (1099)
Q Consensus 588 i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alD-n~~ar~~i~~~c~~~~~P--li~sgt~G~~G~-~~v~ip~~t~cy~c 663 (1099)
|+.. + + + +-++++|+||.|+- +.+.++.+-...-..-.| ++-+-|.+..-. ..-..++-..+.+.
T Consensus 381 i~~~-------~-~-~--~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~ 449 (714)
T TIGR02437 381 ITPT-------L-S-Y--AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGM 449 (714)
T ss_pred eEEe-------C-C-H--HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEE
Confidence 2211 1 0 1 22589999999975 567776544443333222 443444332110 00001111111111
Q ss_pred C-CCCCCCCCCcccccCCCCCcchhHHHHHHHhhhhccCChhhh
Q 001331 664 S-RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 706 (1099)
Q Consensus 664 ~-~~p~~~~~p~Ct~~~~P~~~~Hci~wAr~~F~~lF~~~~~~~ 706 (1099)
+ -.|+. -.|+--+-.-+.....++.++.++... .++.|-.+
T Consensus 450 Hff~P~~-~~~lvEvv~g~~Ts~~~~~~~~~~~~~-lgk~pv~v 491 (714)
T TIGR02437 450 HFFNPVH-RMPLVEVIRGEKSSDETIATVVAYASK-MGKTPIVV 491 (714)
T ss_pred ecCCCcc-cCceEeecCCCCCCHHHHHHHHHHHHH-cCCEEEEe
Confidence 1 12322 234433444566667888888887654 46665444
No 452
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=78.70 E-value=1.9 Score=51.73 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=29.2
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
.+|+|||+|-.||++|..||+.|+ +++|+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~------~V~LiE~r 32 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV------PVILYEMR 32 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC------cEEEEecc
Confidence 379999999999999999999998 89999864
No 453
>PRK06172 short chain dehydrogenase; Provisional
Probab=78.60 E-value=4.7 Score=44.06 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=29.3
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 509 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 509 L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
|.+++++|.| .|+||.++++.|+..|. ++++++.+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~------~v~~~~r~ 40 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA------KVVVADRD 40 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCC
Confidence 5578999998 58999999999999997 68777643
No 454
>PRK08507 prephenate dehydrogenase; Validated
Probab=78.57 E-value=8.7 Score=43.16 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=26.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCC-eEEEEeC
Q 001331 116 NILVSGMQGLGAEIAKNLILAGVK-SVTLHDE 146 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGVg-~itlvD~ 146 (1099)
+|.|||+|.+|..++.+|...|.. .|+.+|.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~ 33 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDH 33 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 699999999999999999999963 6777764
No 455
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.57 E-value=6.7 Score=45.67 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=54.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCCC
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT 194 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l~ 194 (1099)
.+|+|+|+|..|+.+|..|+..| .++++..+.-....++..- .....++. -..+.+. +.+. .++.
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~-~~~~~l~~---------~~~l~~~--i~~t-~d~~ 72 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNH-RNSRYLGN---------DVVLSDT--LRAT-TDFA 72 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcC-CCcccCCC---------CcccCCC--eEEE-CCHH
Confidence 57999999999999999999998 4666654322111121110 00000100 0011111 1111 1111
Q ss_pred hhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEE
Q 001331 195 KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 232 (1099)
Q Consensus 195 ~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~ 232 (1099)
+.+.+.|+||++..+...+..+.++....++..++|+
T Consensus 73 -~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIs 109 (341)
T PRK12439 73 -EAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVS 109 (341)
T ss_pred -HHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEE
Confidence 3467889999999876666555555443332234443
No 456
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.56 E-value=7.1 Score=46.93 Aligned_cols=123 Identities=15% Similarity=0.175 Sum_probs=72.1
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
+.+++|+|+|+|+.|..+++-|...|. +++..|...- . .. ...|. ..+.+. ..
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~~~------------~-----~~----~~~l~---~g~~~~--~~ 56 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTRIT------------P-----PG----LDKLP---ENVERH--TG 56 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCCC------------c-----hh----HHHHh---cCCEEE--eC
Confidence 457889999999999999999999997 7888885421 0 00 11232 134442 33
Q ss_pred CCChhhccCCcEEEEecCCHHHHHHHHHHHHhcCCCceeEEEeecceeEEEEEEcCCceEEEcCCCCCCcceeeccc
Q 001331 192 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASI 268 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~~~v~d~~ge~p~~~~i~~I 268 (1099)
..+...+.++|+||....-... ...-..+++.+ +|++. .. -+.+.++ +. .-..|.=++|....+.+|..|
T Consensus 57 ~~~~~~~~~~d~vv~spgi~~~-~~~~~~a~~~g--~~v~~-~~-el~~~~~-~~-~~I~VTGTnGKTTTt~ll~~i 126 (438)
T PRK03806 57 SLNDEWLLAADLIVASPGIALA-HPSLSAAADAG--IEIVG-DI-ELFCREA-QA-PIVAITGSNGKSTVTTLVGEM 126 (438)
T ss_pred CCCHHHhcCCCEEEECCCCCCC-CHHHHHHHHCC--CeEEE-HH-HHHhhhc-CC-CEEEEeCCCCHHHHHHHHHHH
Confidence 3344556788988886542122 23445678899 88554 21 2222222 11 234455566766655565555
No 457
>PRK06138 short chain dehydrogenase; Provisional
Probab=78.53 E-value=5.8 Score=43.17 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=28.8
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 509 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 509 L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
|++++++|.| .|+||..+++.|+..|. ++++++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~------~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA------RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC------eEEEecC
Confidence 5678899998 58999999999999987 6777764
No 458
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=78.50 E-value=3.8 Score=47.20 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=0.0
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCC
Q 001331 116 NILVSGM-QGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 193 (1099)
Q Consensus 116 ~VlIiG~-gglG~EiaKnLvlaGV-g~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l 193 (1099)
+|.|+|+ |.+|+.+|-.|+..|+ .++.|+| +-+ ++.-+.-|+...+.+.|......
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~D-------------------i~~--a~g~a~DL~~~~~~~~i~~~~~~- 58 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYD-------------------IAG--AAGVAADLSHIPTAASVKGFSGE- 58 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEec-------------------CCC--CcEEEchhhcCCcCceEEEecCC-
Q ss_pred C--hhhccCCcEEEEe
Q 001331 194 T--KEQLSDFQAVVFT 207 (1099)
Q Consensus 194 ~--~~~l~~~dvVV~~ 207 (1099)
+ .+.+.+.|+||+|
T Consensus 59 ~~~~~~~~daDivvit 74 (312)
T TIGR01772 59 EGLENALKGADVVVIP 74 (312)
T ss_pred CchHHHcCCCCEEEEe
No 459
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=78.49 E-value=12 Score=42.05 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=25.2
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeC
Q 001331 116 NILVSGM-QGLGAEIAKNLILAGV-KSVTLHDE 146 (1099)
Q Consensus 116 ~VlIiG~-gglG~EiaKnLvlaGV-g~itlvD~ 146 (1099)
+|+|.|. |.+|.++++.|...|- -+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899985 8999999999999883 46777763
No 460
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=78.41 E-value=2.8 Score=50.97 Aligned_cols=121 Identities=13% Similarity=0.170 Sum_probs=68.2
Q ss_pred cEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccc--hHHHHHHHHHHhh-CCCCeEE
Q 001331 513 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ--AKSTVAASAATSI-NPRLNIE 589 (1099)
Q Consensus 513 ~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~--~Ka~vaa~~l~~~-np~~~i~ 589 (1099)
.|.|||+|..|..++.+|+..|. ++++.|.+.=....+..+. ..|. .-+..+++.+..+ .|++-+.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~------~V~v~drt~~~~~~l~~~~-----~~g~~~~~~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF------TVSVYNRTPEKTDEFLAEH-----AKGKKIVGAYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC------eEEEEeCCHHHHHHHHhhc-----cCCCCceecCCHHHHHhhcCCCCEEEE
Confidence 47899999999999999999998 7888886543222222110 0010 0111223333332 3554444
Q ss_pred EEecccCcccccccc--hhhhcCCCEEEEccC-chHHHHHHHhhcccccccEEEcCcCcc
Q 001331 590 ALQNRVGPETENVFD--DTFWENITCVINALD-NVNARLYVDQRCLYFQKPLLESGTLGA 646 (1099)
Q Consensus 590 ~~~~~v~~~~e~~~~--~~~~~~~DvVi~alD-n~~ar~~i~~~c~~~~~Pli~sgt~G~ 646 (1099)
.+.. +...+.+++ ...+..=|+|||+.- .+..-....+.+...++.++++++.|.
T Consensus 70 ~v~~--~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 70 MVKA--GAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG 127 (467)
T ss_pred ECCC--cHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence 4332 111122221 123445589999875 333323334567778899999999884
No 461
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=78.33 E-value=6.3 Score=45.69 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=29.1
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 112 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 112 L~~s~VlIiG~-gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
+.+++|+|.|. |.+|+++++.|+..|- +|+++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 45689999995 7799999999999995 67777754
No 462
>PRK09330 cell division protein FtsZ; Validated
Probab=78.31 E-value=8.1 Score=45.67 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=59.6
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCe--EEEEeCCc--cCcccCCcccccCCC-----------cccchHHHHHHHH
Q 001331 112 LFASNILVSGMQGLGAEIAKNLILAGVKS--VTLHDEGT--VELWDLSSNFVFSDN-----------DIGKNRALASVQK 176 (1099)
Q Consensus 112 L~~s~VlIiG~gglG~EiaKnLvlaGVg~--itlvD~d~--V~~~dL~~qf~~~~~-----------diGk~Kaea~~~~ 176 (1099)
....+|.|||+||-|+.++.+|+..|+.. +..++.|. ...+....-..+.++ ++|+.-|+...+.
T Consensus 11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe~G~~aaee~~e~ 90 (384)
T PRK09330 11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPEVGRKAAEESREE 90 (384)
T ss_pred ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999998764 45556654 233333333333321 1222222333333
Q ss_pred HHHhCCCcEEEEEecCCChhhccCCcEEEEecC------CHHHHHHHHHHHHhcCCCceeE
Q 001331 177 LQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDI------SLDKAIEFDDFCHNHQPAISFI 231 (1099)
Q Consensus 177 L~eLNp~V~v~~~~~~l~~~~l~~~dvVV~~~~------~~~~~~~ln~~c~~~~~~ipfI 231 (1099)
++ +.++++|.|+++.. +-... .+.+++++.+ ++.+
T Consensus 91 I~-----------------~~l~~~D~vfI~AGmGGGTGTGaap-vIA~iake~g--~ltv 131 (384)
T PRK09330 91 IR-----------------EALEGADMVFITAGMGGGTGTGAAP-VVAEIAKELG--ILTV 131 (384)
T ss_pred HH-----------------HHHcCCCEEEEEecCCCcccHHHHH-HHHHHHHHcC--CcEE
Confidence 32 23557787776532 23333 6889999988 6555
No 463
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=78.30 E-value=8.6 Score=43.69 Aligned_cols=117 Identities=18% Similarity=0.240 Sum_probs=69.8
Q ss_pred CcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccc------cCcccchHHHHHHHHHHhhCC
Q 001331 512 AKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFR------DWNIGQAKSTVAASAATSINP 584 (1099)
Q Consensus 512 ~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~------~~diG~~Ka~vaa~~l~~~np 584 (1099)
.+|+|.| ||=|||..++.|...|. .++|+| .++|=+|..+-+ +.||.- .+.+.+.+.+..|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~------~vvV~D----NL~~g~~~~v~~~~~~f~~gDi~D--~~~L~~vf~~~~i 68 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH------EVVVLD----NLSNGHKIALLKLQFKFYEGDLLD--RALLTAVFEENKI 68 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC------eEEEEe----cCCCCCHHHhhhccCceEEecccc--HHHHHHHHHhcCC
Confidence 3688885 99999999999999998 889998 345545544433 234432 2345555555565
Q ss_pred CCeEEEEec-ccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhccccc-ccEEEcCcCcccceeE
Q 001331 585 RLNIEALQN-RVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQ-KPLLESGTLGAKCNTQ 651 (1099)
Q Consensus 585 ~~~i~~~~~-~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~-~Pli~sgt~G~~G~~~ 651 (1099)
+.-|..-.. .+++..+.. .+++.+ |+-.-+-+-+.|++++ +.+|.|.|...+|.-.
T Consensus 69 daViHFAa~~~VgESv~~P--l~Yy~N---------Nv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~ 126 (329)
T COG1087 69 DAVVHFAASISVGESVQNP--LKYYDN---------NVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPT 126 (329)
T ss_pred CEEEECccccccchhhhCH--HHHHhh---------chHhHHHHHHHHHHhCCCEEEEecchhhcCCCC
Confidence 533321111 122222211 123322 5555566667788877 4578888888887743
No 464
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.29 E-value=4.1 Score=46.40 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=29.2
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
.|.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga------~Vv~~~~ 44 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGA------TVVVNDV 44 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEecC
Confidence 46678899998 57899999999999997 6777764
No 465
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=78.29 E-value=12 Score=43.40 Aligned_cols=87 Identities=14% Similarity=0.028 Sum_probs=56.9
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecCC
Q 001331 114 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 193 (1099)
Q Consensus 114 ~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~l 193 (1099)
..+|+|+|+||+|.-.++....+| -+++.+|. +..|.+.+ ++|--+.-+.....+.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~-------------------~~~K~e~a----~~lGAd~~i~~~~~~~ 222 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITR-------------------SEEKLELA----KKLGADHVINSSDSDA 222 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeC-------------------ChHHHHHH----HHhCCcEEEEcCCchh
Confidence 678999999999999999999899 68888873 33344333 3444444444332222
Q ss_pred ChhhccCCcEEEEecCCHHHHHHHHHHHHhcC
Q 001331 194 TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ 225 (1099)
Q Consensus 194 ~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~ 225 (1099)
.+..-..+|+||.+.. .......-+.++..|
T Consensus 223 ~~~~~~~~d~ii~tv~-~~~~~~~l~~l~~~G 253 (339)
T COG1064 223 LEAVKEIADAIIDTVG-PATLEPSLKALRRGG 253 (339)
T ss_pred hHHhHhhCcEEEECCC-hhhHHHHHHHHhcCC
Confidence 2222223999999887 555555566667666
No 466
>PRK07774 short chain dehydrogenase; Provisional
Probab=78.25 E-value=3.4 Score=44.97 Aligned_cols=35 Identities=20% Similarity=0.510 Sum_probs=30.0
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 509 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 509 L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
+++++++|.|+ |+||..+++.|+..|. +++++|.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~------~vi~~~r~ 39 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA------SVVVADIN 39 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56788999996 9999999999999997 78887754
No 467
>PRK07856 short chain dehydrogenase; Provisional
Probab=78.23 E-value=6.6 Score=43.01 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=48.1
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccch-HHHHHHHHHHhhCCCC
Q 001331 509 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA-KSTVAASAATSINPRL 586 (1099)
Q Consensus 509 L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~-Ka~vaa~~l~~~np~~ 586 (1099)
+.+++++|.| .|+||.++++.|+..|. +++++|.+.-. ........+...|+..+ ..+.+.+.+.+..+.+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~------~v~~~~r~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 76 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA------TVVVCGRRAPE-TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRL 76 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeCChhh-hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5678899998 68999999999999997 78888865421 11122333445566553 2333344444444445
Q ss_pred eEEEEec
Q 001331 587 NIEALQN 593 (1099)
Q Consensus 587 ~i~~~~~ 593 (1099)
.+..+..
T Consensus 77 d~vi~~a 83 (252)
T PRK07856 77 DVLVNNA 83 (252)
T ss_pred CEEEECC
Confidence 5555543
No 468
>PRK05875 short chain dehydrogenase; Provisional
Probab=78.20 E-value=6.4 Score=43.68 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=0.0
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 509 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 509 L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
+.+++++|.|+ |+||.++++.|+..|. +++++ +-...+.....+.+.......+
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~------~V~~~-------------------~r~~~~~~~~~~~l~~~~~~~~ 59 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA------AVMIV-------------------GRNPDKLAAAAEEIEALKGAGA 59 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC------eEEEE-------------------eCCHHHHHHHHHHHHhccCCCc
Q ss_pred EEEEecccCcccccccchhhhc-------CCCEEEEc
Q 001331 588 IEALQNRVGPETENVFDDTFWE-------NITCVINA 617 (1099)
Q Consensus 588 i~~~~~~v~~~~e~~~~~~~~~-------~~DvVi~a 617 (1099)
+..+...+.....-. ..++ ..|+||++
T Consensus 60 ~~~~~~Dl~~~~~~~---~~~~~~~~~~~~~d~li~~ 93 (276)
T PRK05875 60 VRYEPADVTDEDQVA---RAVDAATAWHGRLHGVVHC 93 (276)
T ss_pred eEEEEcCCCCHHHHH---HHHHHHHHHcCCCCEEEEC
No 469
>PRK08605 D-lactate dehydrogenase; Validated
Probab=78.14 E-value=2.6 Score=48.87 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=28.5
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHH-cCCCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~-~Gv~~~~~g~i~ivD~ 548 (1099)
.|.+++|.|||+|.+|..+++.|+. .|+ ++...|.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~------~V~~~d~ 178 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGS------DVVAYDP 178 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhcCCC------EEEEECC
Confidence 5788899999999999999999953 444 6676664
No 470
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.14 E-value=2.2 Score=49.30 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=29.2
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhCCCe------EEEEeCC
Q 001331 115 SNILVSGM-QGLGAEIAKNLILAGVKS------VTLHDEG 147 (1099)
Q Consensus 115 s~VlIiG~-gglG~EiaKnLvlaGVg~------itlvD~d 147 (1099)
.+|+|+|+ |.+|+.++..|+..|+-. +.|+|..
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 37999999 999999999999988765 9999864
No 471
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=78.10 E-value=5.8 Score=45.63 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=29.0
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 509 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 509 L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
+.+++|+|.| +|+||..+++.|+..|-. .+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~----~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNP----KKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCC----cEEEEEcCC
Confidence 3567899998 589999999999998720 378888744
No 472
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=78.08 E-value=7.4 Score=42.14 Aligned_cols=36 Identities=33% Similarity=0.418 Sum_probs=30.2
Q ss_pred HhhcCeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 111 RLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 111 kL~~s~VlIiG-~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
.+++++|+|.| .|++|..+++.|...|. +|++++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45678999998 78999999999999997 67777653
No 473
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=78.08 E-value=1.9 Score=50.03 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=31.8
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEe
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTIT 546 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~iv 546 (1099)
.|.+++|+|||+|-+|..++++|...|+ ++|+|+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~-----~~i~v~ 204 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGY-----SRITFC 204 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCC-----CEEEEE
Confidence 4788999999999999999999999999 888886
No 474
>PLN02688 pyrroline-5-carboxylate reductase
Probab=78.06 E-value=13 Score=41.46 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=46.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhCC---CeEEEE-eCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEec
Q 001331 116 NILVSGMQGLGAEIAKNLILAGV---KSVTLH-DEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 191 (1099)
Q Consensus 116 ~VlIiG~gglG~EiaKnLvlaGV---g~itlv-D~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~ 191 (1099)
+|.+||+|.+|..++++|..+|. ..|+++ |. ...|+ +.+.+. .+.+. .
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r-------------------~~~~~----~~~~~~--g~~~~--~- 53 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS-------------------NPARR----DVFQSL--GVKTA--A- 53 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC-------------------CHHHH----HHHHHc--CCEEe--C-
Confidence 69999999999999999999985 255555 21 01122 223332 23322 1
Q ss_pred CCChhhccCCcEEEEecCCHHHHHHHHHH
Q 001331 192 KLTKEQLSDFQAVVFTDISLDKAIEFDDF 220 (1099)
Q Consensus 192 ~l~~~~l~~~dvVV~~~~~~~~~~~ln~~ 220 (1099)
. ..+...+.|+||.|..+......+.++
T Consensus 54 ~-~~e~~~~aDvVil~v~~~~~~~vl~~l 81 (266)
T PLN02688 54 S-NTEVVKSSDVIILAVKPQVVKDVLTEL 81 (266)
T ss_pred C-hHHHHhcCCEEEEEECcHHHHHHHHHH
Confidence 1 224566889999998655444444444
No 475
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=78.03 E-value=1.9 Score=48.97 Aligned_cols=35 Identities=14% Similarity=0.434 Sum_probs=31.0
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
.|.+++|+|+|+|++|..+++.|..+|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~------~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA------RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC------EEEEEeC
Confidence 5678899999999999999999999997 7888764
No 476
>PRK08291 ectoine utilization protein EutC; Validated
Probab=77.87 E-value=7 Score=45.31 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=79.6
Q ss_pred ccccCchhhhhhhhhhHHHHHhhcCC------ccccc--eeeeeccCCCCCCCCC-CCCCCCCccCchhhhhhhcCHHHH
Q 001331 436 RAVLNPMAAMFGGIVGQEVVKACSGK------FHPLY--QFFYFDSVESLPTEPL-DSTEFKPINSRYDAQISVFGAKLQ 506 (1099)
Q Consensus 436 ~~el~pvaA~iGGiaAQEVIKaiTgk------f~PI~--q~~~fD~~e~l~~~~~-~~~~~~~~~~Rydrqi~l~G~~~q 506 (1099)
++.++.|.++++|.-. -.+|.++.- -.|-. -.++||.-.+.|..-+ ....+ ..-|-+.- ...+....
T Consensus 52 ~~~~~~mp~~~~~~~~-~g~K~~~~~~~N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~l--t~~rT~a~-~~~a~~~l 127 (330)
T PRK08291 52 RGEVDVKTAYIPGLDS-FAIKVSPGFFDNPKLGLPSLNGLMVVLSARTGLVEALLLDNGYL--TDVRTAAA-GAVAARHL 127 (330)
T ss_pred CCcEEEeecccCCCCe-eEEEeccCCCCccccCCCcceEEEEEEeCCCCceEEEEcCCchH--HHHHHHHH-HHHHHHHh
Confidence 3467777888876311 237877642 22332 3566776656543211 11111 01111111 11122211
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHH-cCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCC
Q 001331 507 KKLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR 585 (1099)
Q Consensus 507 ~~L~~~~v~vvG~GglG~evlk~La~-~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~ 585 (1099)
.+-..++++|+|+|+.|...+..|+. .|+ .+++|++.+ ..|++.+++.+.+.. .
T Consensus 128 a~~~~~~v~IiGaG~~a~~~~~al~~~~~~-----~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g 182 (330)
T PRK08291 128 AREDASRAAVIGAGEQARLQLEALTLVRPI-----REVRVWARD-------------------AAKAEAYAADLRAEL-G 182 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEcCC-------------------HHHHHHHHHHHhhcc-C
Confidence 22234689999999999999999985 577 788887532 236666776665432 2
Q ss_pred CeEEEEecccCcccccccchhhhcCCCEEEEccCc
Q 001331 586 LNIEALQNRVGPETENVFDDTFWENITCVINALDN 620 (1099)
Q Consensus 586 ~~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn 620 (1099)
+++..+. +. .+.+.++|+|++|+-.
T Consensus 183 ~~v~~~~-----d~-----~~al~~aDiVi~aT~s 207 (330)
T PRK08291 183 IPVTVAR-----DV-----HEAVAGADIIVTTTPS 207 (330)
T ss_pred ceEEEeC-----CH-----HHHHccCCEEEEeeCC
Confidence 3333321 11 2445789999999854
No 477
>PRK07574 formate dehydrogenase; Provisional
Probab=77.68 E-value=7 Score=46.31 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=32.4
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 110 RRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 110 ~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
..|.+++|.|+|+|.+|.++|+.|...|+ ++..+|.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr 223 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDR 223 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence 46899999999999999999999999998 6777775
No 478
>PRK06720 hypothetical protein; Provisional
Probab=77.66 E-value=6 Score=41.30 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=29.5
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 509 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 509 L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
+.++.++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~------~V~l~~r~ 49 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGA------KVIVTDID 49 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCC------EEEEEECC
Confidence 67788899986 4699999999999996 78888754
No 479
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=77.60 E-value=13 Score=43.52 Aligned_cols=90 Identities=14% Similarity=0.007 Sum_probs=58.9
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcccchHHHHHHHHHHHhCCCcEEEEEecC
Q 001331 113 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 192 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~V~~~dL~~qf~~~~~diGk~Kaea~~~~L~eLNp~V~v~~~~~~ 192 (1099)
...+|+|+|+|++|.-.+.-+-+.|...|.++|.+. .|.+.+++.. ..-.+.....+
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-------------------~Rl~~A~~~~----g~~~~~~~~~~ 224 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-------------------ERLELAKEAG----GADVVVNPSED 224 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-------------------HHHHHHHHhC----CCeEeecCccc
Confidence 334899999999999999999999999999998533 2333333321 11111111110
Q ss_pred -CCh---hhc--cCCcEEEEecCCHHHHHHHHHHHHhcC
Q 001331 193 -LTK---EQL--SDFQAVVFTDISLDKAIEFDDFCHNHQ 225 (1099)
Q Consensus 193 -l~~---~~l--~~~dvVV~~~~~~~~~~~ln~~c~~~~ 225 (1099)
... +.- .++|+||.|...........+++|..|
T Consensus 225 ~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG 263 (350)
T COG1063 225 DAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGG 263 (350)
T ss_pred cHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCC
Confidence 000 111 369999999997777777888888888
No 480
>PRK05717 oxidoreductase; Validated
Probab=77.58 E-value=3.9 Score=44.85 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=47.5
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccc----cCCcccccccCcccchHH-HHHHHHHHhh
Q 001331 509 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKS----NLSRQFLFRDWNIGQAKS-TVAASAATSI 582 (1099)
Q Consensus 509 L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~s----NLnRQflf~~~diG~~Ka-~vaa~~l~~~ 582 (1099)
+++++|+|.| .|+||.++++.|+..|. +++++|.+.-... .+...+.+..-|+..... ..+.+.+.+.
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~------~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW------QVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC------EEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4567899998 69999999999999997 7888875431111 112223334556665432 2233444444
Q ss_pred CCCCeEEEEecc
Q 001331 583 NPRLNIEALQNR 594 (1099)
Q Consensus 583 np~~~i~~~~~~ 594 (1099)
.+.+.+..+...
T Consensus 82 ~g~id~li~~ag 93 (255)
T PRK05717 82 FGRLDALVCNAA 93 (255)
T ss_pred hCCCCEEEECCC
Confidence 444555555443
No 481
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=77.56 E-value=7.3 Score=48.55 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=31.4
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001331 113 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 148 (1099)
Q Consensus 113 ~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~ 148 (1099)
.+.+|+|||+|..|...|..|.+.|. +++++|...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~ 170 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP 170 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 57899999999999999999999998 599999643
No 482
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=77.53 E-value=6.3 Score=46.56 Aligned_cols=77 Identities=21% Similarity=0.240 Sum_probs=0.0
Q ss_pred CcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCeEEE
Q 001331 512 AKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 590 (1099)
Q Consensus 512 ~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 590 (1099)
.+|.||| +|.+|..+++.|...|. .++++|.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~------~V~~~d~~----------------------------------------- 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY------QVRILEQD----------------------------------------- 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC------eEEEeCCC-----------------------------------------
Q ss_pred EecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcc-cccccEEEcCcC
Q 001331 591 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCL-YFQKPLLESGTL 644 (1099)
Q Consensus 591 ~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~-~~~~Pli~sgt~ 644 (1099)
..... .+.+.++|+||-|+=...+...+..+.. ..+.-+++.|+.
T Consensus 132 -------~~~~~--~~~~~~aDlVilavP~~~~~~~~~~l~~l~~~~iv~Dv~Sv 177 (374)
T PRK11199 132 -------DWDRA--EDILADAGMVIVSVPIHLTEEVIARLPPLPEDCILVDLTSV 177 (374)
T ss_pred -------cchhH--HHHHhcCCEEEEeCcHHHHHHHHHHHhCCCCCcEEEECCCc
No 483
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.48 E-value=5.5 Score=45.48 Aligned_cols=77 Identities=12% Similarity=0.199 Sum_probs=56.9
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCC
Q 001331 508 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 586 (1099)
Q Consensus 508 ~L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~ 586 (1099)
.+.+++|+||| .|.+|..++.+|+..|. .+++++.-+- +
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~------tVtv~~~rT~--------------~-------------------- 194 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA------TVTIAHSRTR--------------D-------------------- 194 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC------EEEEECCCCC--------------C--------------------
Confidence 46788999999 99999999999999997 7888742211 0
Q ss_pred eEEEEecccCcccccccchhhhcCCCEEEEccCchHHHHHHHhhcccccccEEEcCcC
Q 001331 587 NIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTL 644 (1099)
Q Consensus 587 ~i~~~~~~v~~~~e~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~Pli~sgt~ 644 (1099)
+ .+..++.|+||.|+.+.. .+.....+-+.-+|+.|+.
T Consensus 195 ---------------l--~e~~~~ADIVIsavg~~~---~v~~~~lk~GavVIDvGin 232 (296)
T PRK14188 195 ---------------L--PAVCRRADILVAAVGRPE---MVKGDWIKPGATVIDVGIN 232 (296)
T ss_pred ---------------H--HHHHhcCCEEEEecCChh---hcchheecCCCEEEEcCCc
Confidence 0 234578999999998865 4555556667777777764
No 484
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=77.45 E-value=10 Score=41.70 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=33.9
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001331 110 RRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 147 (1099)
Q Consensus 110 ~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d 147 (1099)
..|+..+|+|.|.|.+|..+++.|...|.+=+.+.|..
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 55789999999999999999999999998777788864
No 485
>PRK06181 short chain dehydrogenase; Provisional
Probab=77.43 E-value=5.5 Score=43.83 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=26.5
Q ss_pred CcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 512 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 512 ~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
++|+|.|+ |+||.++++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~------~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA------QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 47899986 9999999999999886 7887764
No 486
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=77.40 E-value=2.2 Score=49.11 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=32.2
Q ss_pred HHHHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEec
Q 001331 506 QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 547 (1099)
Q Consensus 506 q~~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD 547 (1099)
...|++++|.|||.|.+|..++++|..+|+ ++++.|
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~------~ViV~~ 46 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV------EVVVGV 46 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC------EEEEEE
Confidence 467899999999999999999999999999 677665
No 487
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=77.39 E-value=5.8 Score=50.38 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=30.9
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 510 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 510 ~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
.+++|+|||+|..|...+..|++.|. +++|+|.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEecC
Confidence 46799999999999999999999998 69999864
No 488
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=77.36 E-value=3 Score=47.45 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=32.1
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 111 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 111 kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
.|.+++|+|+|+|++|..+|+.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5678999999999999999999999997 8999875
No 489
>PRK12367 short chain dehydrogenase; Provisional
Probab=77.35 E-value=2.6 Score=46.52 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=34.0
Q ss_pred HHHHHhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 505 LQKKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 505 ~q~~L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
.|.++.+++++|.|+ ||||.++++.|+..|. +++++|.+
T Consensus 8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~------~Vi~~~r~ 47 (245)
T PRK12367 8 AQSTWQGKRIGITGASGALGKALTKAFRAKGA------KVIGLTHS 47 (245)
T ss_pred hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 588999999999984 8999999999999997 77777754
No 490
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=77.34 E-value=2.1 Score=50.71 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=30.0
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCCc
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 550 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~ 550 (1099)
++|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~------~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY------QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC------eEEEEeCCC
Confidence 489999999999999999999997 899998664
No 491
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=77.28 E-value=2.1 Score=51.46 Aligned_cols=36 Identities=33% Similarity=0.584 Sum_probs=32.3
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 509 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 509 L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
+.+.+|+|+|+|++|..+++.|...|+ .+++++|.+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~-----~~V~v~~r~ 215 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGV-----RKITVANRT 215 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCC-----CeEEEEeCC
Confidence 678899999999999999999999998 789988643
No 492
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=77.25 E-value=3 Score=47.96 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=33.7
Q ss_pred HHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001331 108 TMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 146 (1099)
Q Consensus 108 ~q~kL~~s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~ 146 (1099)
....|++++|.|||+|.+|..+|+||..+|+ ++.+.|.
T Consensus 10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r 47 (335)
T PRK13403 10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVR 47 (335)
T ss_pred ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEEC
Confidence 3568999999999999999999999999999 6777763
No 493
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=77.24 E-value=3 Score=51.50 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.3
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
.|.+++|.|||.|.+|.++++.|...|+ +++.+|.
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~ 169 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGM------KVLAYDP 169 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 4788999999999999999999998887 7888874
No 494
>PLN02688 pyrroline-5-carboxylate reductase
Probab=77.15 E-value=9 Score=42.65 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.9
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCC
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGV 535 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv 535 (1099)
.+|.+||+|.+|+.+++.|...|.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC
Confidence 369999999999999999999884
No 495
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=77.11 E-value=6.4 Score=44.89 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=27.0
Q ss_pred CcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecC
Q 001331 512 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 548 (1099)
Q Consensus 512 ~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~ 548 (1099)
.+|+|+|+|++|...+..+..+|+ ..+.++|.
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~-----~~v~~~~~ 177 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGG-----SPPAVWET 177 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCC-----ceEEEeCC
Confidence 479999999999999988888998 66777654
No 496
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=77.08 E-value=7.3 Score=47.95 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001331 115 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 148 (1099)
Q Consensus 115 s~VlIiG~gglG~EiaKnLvlaGVg~itlvD~d~ 148 (1099)
++|.|||+|-.|..||.+|+.+|. .++++|.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 679999999999999999999998 789998643
No 497
>PRK12827 short chain dehydrogenase; Provisional
Probab=76.93 E-value=6.1 Score=42.75 Aligned_cols=33 Identities=33% Similarity=0.569 Sum_probs=28.6
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEec
Q 001331 509 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITD 547 (1099)
Q Consensus 509 L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD 547 (1099)
|.+++++|.| .|+||.++++.|+..|. ++++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~------~v~~~~ 37 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGA------DVIVLD 37 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC------eEEEEc
Confidence 4567899998 79999999999999997 677776
No 498
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=76.84 E-value=2.3 Score=49.34 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=31.9
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHcCCCCCCCccEEEecCC
Q 001331 508 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 549 (1099)
Q Consensus 508 ~L~~~~v~vvG~GglG~evlk~La~~Gv~~~~~g~i~ivD~D 549 (1099)
.|.+++|.|||+|.+|..+++.|...|. +++.+|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~------~V~~~d~~ 178 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA------TITAYDAY 178 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEeCC
Confidence 4788899999999999999999999887 88888854
No 499
>PRK06398 aldose dehydrogenase; Validated
Probab=76.76 E-value=8 Score=42.70 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=49.8
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHH-HHHHHHHHhhCCC
Q 001331 508 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS-TVAASAATSINPR 585 (1099)
Q Consensus 508 ~L~~~~v~vvG-~GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka-~vaa~~l~~~np~ 585 (1099)
.|++++++|.| .||||.++++.|+..|. ++++++.+.-+. . +..+-..|+..+.. +.+.+.+.+....
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~------~Vi~~~r~~~~~---~-~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS------NVINFDIKEPSY---N-DVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC------eEEEEeCCcccc---C-ceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35678899998 67999999999999997 788887654221 1 23334557776543 3444555555555
Q ss_pred CeEEEEecc
Q 001331 586 LNIEALQNR 594 (1099)
Q Consensus 586 ~~i~~~~~~ 594 (1099)
+.+-.+...
T Consensus 73 id~li~~Ag 81 (258)
T PRK06398 73 IDILVNNAG 81 (258)
T ss_pred CCEEEECCC
Confidence 555555443
No 500
>PRK06125 short chain dehydrogenase; Provisional
Probab=76.70 E-value=7.7 Score=42.64 Aligned_cols=83 Identities=14% Similarity=0.189 Sum_probs=0.0
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHcCCCCCCCccEEEecCCccccccCCcccccccCcccchHHHHHHHHHHhhCCCCe
Q 001331 509 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 587 (1099)
Q Consensus 509 L~~~~v~vvG~-GglG~evlk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~vaa~~l~~~np~~~ 587 (1099)
+.+++++|.|+ ||+|.++++.|+..|. ++++++.+ ..+.+.+.+.+.+.. ..+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~------~V~~~~r~-------------------~~~~~~~~~~l~~~~-~~~ 58 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC------HLHLVARD-------------------ADALEALAADLRAAH-GVD 58 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCC-------------------HHHHHHHHHHHHhhc-CCc
Q ss_pred EEEEecccCcccccccchhhhcCCCEEEEc
Q 001331 588 IEALQNRVGPETENVFDDTFWENITCVINA 617 (1099)
Q Consensus 588 i~~~~~~v~~~~e~~~~~~~~~~~DvVi~a 617 (1099)
+..+...+.....-.---+.+...|++|++
T Consensus 59 ~~~~~~D~~~~~~~~~~~~~~g~id~lv~~ 88 (259)
T PRK06125 59 VAVHALDLSSPEAREQLAAEAGDIDILVNN 88 (259)
T ss_pred eEEEEecCCCHHHHHHHHHHhCCCCEEEEC
Done!