Query 001333
Match_columns 1097
No_of_seqs 275 out of 1301
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 22:04:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06464 phosphoenolpyruvate s 100.0 1.5E-49 3.4E-54 489.7 28.5 289 779-1096 3-333 (795)
2 PRK06241 phosphoenolpyruvate s 100.0 1.2E-48 2.5E-53 488.0 27.8 278 780-1096 2-311 (871)
3 TIGR01418 PEP_synth phosphoeno 100.0 4.7E-48 1E-52 476.8 28.4 287 782-1096 1-331 (782)
4 PF01326 PPDK_N: Pyruvate phos 100.0 1.9E-49 4.2E-54 447.0 0.5 269 792-1097 4-303 (327)
5 PRK05878 pyruvate phosphate di 100.0 3.1E-39 6.8E-44 381.3 18.7 246 778-1096 4-297 (530)
6 COG0574 PpsA Phosphoenolpyruva 100.0 3.4E-37 7.5E-42 379.3 16.2 278 782-1096 4-320 (740)
7 TIGR01828 pyru_phos_dikin pyru 100.0 8.5E-35 1.8E-39 360.0 18.9 242 781-1096 2-337 (856)
8 PRK09279 pyruvate phosphate di 100.0 1.3E-31 2.7E-36 331.0 21.5 242 780-1096 3-343 (879)
9 PRK05849 hypothetical protein; 99.9 8.2E-26 1.8E-30 277.0 18.0 193 791-1097 5-216 (783)
10 PLN02784 alpha-amylase 99.9 1.1E-25 2.4E-30 272.9 13.1 136 50-186 62-210 (894)
11 PLN02784 alpha-amylase 99.9 4.7E-23 1E-27 250.2 12.8 113 74-189 282-397 (894)
12 PRK05849 hypothetical protein; 96.7 0.023 4.9E-07 72.1 14.8 175 566-747 571-780 (783)
13 PRK08296 hypothetical protein; 95.9 0.014 2.9E-07 72.1 7.2 98 645-749 502-601 (603)
14 PF00391 PEP-utilizers: PEP-ut 95.8 0.0089 1.9E-07 55.0 3.9 68 672-743 9-78 (80)
15 PRK06241 phosphoenolpyruvate s 95.4 0.024 5.3E-07 73.2 6.9 93 648-749 773-868 (871)
16 PF03423 CBM_25: Carbohydrate 95.4 0.091 2E-06 49.4 8.9 65 98-183 20-86 (87)
17 PRK05865 hypothetical protein; 93.8 0.17 3.7E-06 65.1 8.9 94 648-750 741-837 (854)
18 TIGR01418 PEP_synth phosphoeno 93.8 0.094 2E-06 67.1 6.5 94 644-744 356-451 (782)
19 PRK06354 pyruvate kinase; Prov 93.7 0.082 1.8E-06 65.4 5.4 94 646-746 486-581 (590)
20 PRK05878 pyruvate phosphate di 93.4 0.12 2.7E-06 63.2 6.4 99 642-747 350-451 (530)
21 PRK06464 phosphoenolpyruvate s 93.3 0.092 2E-06 67.2 5.2 89 644-740 358-449 (795)
22 PRK11377 dihydroxyacetone kina 93.2 0.13 2.7E-06 62.3 5.9 67 672-748 395-470 (473)
23 TIGR01828 pyru_phos_dikin pyru 92.8 0.13 2.8E-06 66.3 5.5 104 644-750 390-504 (856)
24 PRK09279 pyruvate phosphate di 92.4 0.13 2.7E-06 66.4 4.5 105 644-751 396-511 (879)
25 PRK11177 phosphoenolpyruvate-p 89.7 0.43 9.4E-06 59.2 5.4 77 672-752 153-232 (575)
26 TIGR01417 PTS_I_fam phosphoeno 89.1 0.55 1.2E-05 58.2 5.7 77 672-752 152-231 (565)
27 COG3848 Phosphohistidine swive 88.9 0.5 1.1E-05 45.8 4.0 98 645-749 5-104 (111)
28 PRK11061 fused phosphoenolpyru 87.1 0.7 1.5E-05 59.1 5.1 76 672-753 320-399 (748)
29 COG1080 PtsA Phosphoenolpyruva 85.8 1.1 2.4E-05 54.9 5.6 72 672-753 154-234 (574)
30 PLN02316 synthase/transferase 83.1 5.6 0.00012 52.6 10.5 85 83-186 327-421 (1036)
31 PLN02316 synthase/transferase 82.8 4.2 9.1E-05 53.7 9.2 95 71-186 138-240 (1036)
32 PRK03955 hypothetical protein; 81.7 4.2 9.1E-05 41.4 6.8 95 646-748 6-127 (131)
33 COG3605 PtsP Signal transducti 64.3 4.5 9.7E-05 49.8 2.5 79 668-751 323-405 (756)
34 COG0574 PpsA Phosphoenolpyruva 63.4 3.6 7.9E-05 52.7 1.7 108 606-722 305-414 (740)
35 PF07067 DUF1340: Protein of u 43.6 73 0.0016 34.4 7.0 62 499-577 147-208 (236)
36 PF02786 CPSase_L_D2: Carbamoy 37.2 56 0.0012 35.7 5.4 45 1047-1096 131-179 (211)
37 COG5424 Pyrroloquinoline quino 36.2 42 0.00091 37.4 4.1 25 364-389 92-117 (242)
38 PF04190 DUF410: Protein of un 35.5 1.2E+02 0.0026 34.2 7.8 87 276-366 53-158 (260)
39 KOG3021 Predicted kinase [Gene 27.4 48 0.001 37.0 2.8 43 271-315 95-137 (313)
40 PF14475 Mso1_Sec1_bdg: Sec1-b 22.6 72 0.0016 26.5 2.3 20 343-362 14-33 (41)
No 1
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=1.5e-49 Score=489.65 Aligned_cols=289 Identities=24% Similarity=0.381 Sum_probs=241.3
Q ss_pred CCceeEeCCCCC---CCccchhhHhHHHhhhhCC-CcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChH
Q 001333 779 RGKYAVSVEDFT---PDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLS 854 (1097)
Q Consensus 779 ~~~~vl~l~e~~---~~~VGgKAanLg~L~~~lp-~g~~VP~GfvIpfgafe~fL~~~~n~~L~~~L~~l~~~l~~~d~~ 854 (1097)
+++++++|+++. ...|||||+||++|++.++ .|++||+|||||+++|++||+.+ ++.+.|..+.+.++.++..
T Consensus 3 ~~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~d~~ 79 (795)
T PRK06464 3 MMKYVLWFEELGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQT---GLNEKIYELLDGLDVDDVD 79 (795)
T ss_pred CCceeeehhHcCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHhC---ChHHHHHHHHhhcCcCCHH
Confidence 456889988874 4679999999999998655 59999999999999999999988 7778888777777777765
Q ss_pred HH----HHHHHHHHcCCCCHHHHHHHHHHHH--------------hcC-------CCCCCCc-------cHHHHHHHHHH
Q 001333 855 KL----QEIQEAVLQMSAPLSLIYELKNKMR--------------SSG-------MPWPGDE-------GWNLAWRSIKK 902 (1097)
Q Consensus 855 ~L----~~IR~~I~~~~lP~eL~~eL~~A~R--------------SSg-------~s~AG~~-------g~e~l~~AIK~ 902 (1097)
.+ ++||++|+++++|+++.++|..+++ ||+ .||||+| +.+++++|||+
T Consensus 80 ~l~~~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~l~~AIk~ 159 (795)
T PRK06464 80 ALAKAGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSATAEDLPDASFAGQQETFLNVRGIDDVLEAVKE 159 (795)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCCcccCCCCCCCCCccceecCCCCHHHHHHHHHH
Confidence 44 7999999999999999999988763 443 3789988 37999999999
Q ss_pred HHhcCCChHHHHHHHHcCCCCcccceEEEEEeeecCc--eeEEEEecCCCCCCCcchhhhccccccccccccccCCCceE
Q 001333 903 VWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSF 980 (1097)
Q Consensus 903 VWASlfn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~~i~Iea~~GLGEtLVsG~~Gtpd~f 980 (1097)
||||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++.+.++|+++|||||+||+|.+ +||+|
T Consensus 160 v~aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~a~~~~SGV~fT~dP~~g~~~~~~I~a~~GlGe~vVsG~v-~pd~~ 238 (795)
T PRK06464 160 CFASLFTDRAISYRVHQGFDHFKVALSAGVQKMVRSDLAASGVMFTLDTESGFRDVVFITASWGLGEMVVQGAV-NPDEF 238 (795)
T ss_pred HHHccCCHHHHHHHHHcCCCchhcceeEEEEEccCCCcCceEEEEecCCCCCCCCeEEEEEccCCCcccccCCc-cCeEE
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999986 89999
Q ss_pred EEecCCCC--CCcccccccccccccCCceEEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHH
Q 001333 981 VTKKNNLK--SPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSV 1058 (1097)
Q Consensus 981 ~v~K~~~~--~~~vl~~~sk~i~~~~~~~~i~rsdsnGedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~~l 1058 (1097)
.++|.+.. .+.+ .++.++.+ ...+++. ..| +.| ...++++++. ++.|+|+|++
T Consensus 239 ~v~~~~~~~~~~~i---~~~~i~~K-~~~~~~~--~~~-------~~~-~~~~~~~~~~------~~~~~L~~~~----- 293 (795)
T PRK06464 239 YVHKPTLKAGKPAI---VRRTLGSK-KIKMVYD--DGG-------EHG-VKTVDVPEEE------RNRFSLTDEE----- 293 (795)
T ss_pred EEecccccccccce---eeeecccc-ceeeeec--cCC-------CCc-eeEEeCCHHH------hhccCCCHHH-----
Confidence 99987642 0112 24555543 2223322 111 122 2355665433 4679999988
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEEEEEC--CeEEEEeeccC
Q 001333 1059 FSKIAETGKIIESLYGYPQDIEGVLKD--GLIYVVQARPQ 1096 (1097)
Q Consensus 1059 l~~La~lg~~IE~~fG~PQDIEWai~~--g~LyILQaRPq 1096 (1097)
+++|++++.+||++||+|||||||+++ |+|||||+||+
T Consensus 294 l~~La~l~~~lE~~fg~pqDIEWai~~~~g~l~ILQaRPi 333 (795)
T PRK06464 294 VLELAKQAVIIEKHYGRPMDIEWAKDGDDGKLYIVQARPE 333 (795)
T ss_pred HHHHHHHHHHHHHHhCCCceeEEEEECCCCcEEEEEeecc
Confidence 899999999999999999999999987 99999999997
No 2
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=1.2e-48 Score=487.96 Aligned_cols=278 Identities=23% Similarity=0.420 Sum_probs=230.2
Q ss_pred CceeEeCCCCC---CCccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHH-
Q 001333 780 GKYAVSVEDFT---PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSK- 855 (1097)
Q Consensus 780 ~~~vl~l~e~~---~~~VGgKAanLg~L~~~lp~g~~VP~GfvIpfgafe~fL~~~~n~~L~~~L~~l~~~l~~~d~~~- 855 (1097)
.++++++.++. ...|||||+||++|.+ .|++||+|||||+++|++||+.+ ++.+.|....+.++..+...
T Consensus 2 ~~~v~~l~~~~~~~~~~vGgKa~~L~~L~~---~G~~VP~gfvi~~~~~~~~l~~~---~~~~~i~~~l~~~~~~~~~~~ 75 (871)
T PRK06241 2 SSYVLDFQEIDKTQLPLVGGKGANLGELSR---AGIPVPEGFCVTTEAYKKFLEQN---EEFDALLDQLSALKLEDREQI 75 (871)
T ss_pred CceEEEhhhcCcccccccChHHHHHHHHHH---CCCCCCCeEEecHHHHHHHHHhC---CcHHHHHHHHhcCCCCCHHHH
Confidence 45788888764 4679999999999998 79999999999999999999987 34444443334444445433
Q ss_pred ---HHHHHHHHHcCCCCHHHHHHHHHHH-----------HhcC-------CCCCCCc-------cHHHHHHHHHHHHhcC
Q 001333 856 ---LQEIQEAVLQMSAPLSLIYELKNKM-----------RSSG-------MPWPGDE-------GWNLAWRSIKKVWASK 907 (1097)
Q Consensus 856 ---L~~IR~~I~~~~lP~eL~~eL~~A~-----------RSSg-------~s~AG~~-------g~e~l~~AIK~VWASl 907 (1097)
.++||++|++.++|+++.++|..++ |||+ .||||++ +.+++++|||+||||+
T Consensus 76 ~~~~~~ir~~i~~~~~p~~l~~~l~~a~~~~~~~~~~aVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~~~~ai~~~waS~ 155 (871)
T PRK06241 76 GEISAKIREVIEAIEIPEDIVEAIAAALSKFGEDHAYAVRSSATAEDLPTASFAGQQDTYLNVIGKDAILQHIRKCWASL 155 (871)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCccCCCCCCCccccccccCCCCHHHHHHHHHHHHHhc
Confidence 3799999999999999999999876 5554 3789988 4899999999999999
Q ss_pred CChHHHHHHHHcCCCCcccceEEEEEeeecCceeEEEEecCCCCCCCcchhhhccccccccccccccCCCceEEEecCCC
Q 001333 908 WNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNL 987 (1097)
Q Consensus 908 fn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad~SGVlfT~nP~tgd~~~i~Iea~~GLGEtLVsG~~Gtpd~f~v~K~~~ 987 (1097)
||+||+.||+++|++++++.|||+||+||++++|||+||+||.+++.+.++|+++|||||+||+|.+ +||+|++++ +
T Consensus 156 ~~~ra~~Yr~~~g~~~~~~~maV~vQ~mv~~~~sGV~ft~~P~~~~~~~~~I~a~~GlGe~vV~G~v-~pd~~~v~~--~ 232 (871)
T PRK06241 156 FTERAVIYRIQNGFDHRKVYMSVVVQKMVFPEASGIMFTADPVTGNRKVLSIDASFGLGEALVSGLV-SADTYKVRE--G 232 (871)
T ss_pred cCHHHHHHHHHcCCCchhcceEEEEEeccccccceEEEecCCCCCCCCEEEEEEecCCChhhhcCcc-CCeEEEEeC--C
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 899999982 2
Q ss_pred CCCcccccccccccccCCceEEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHH
Q 001333 988 KSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGK 1067 (1097)
Q Consensus 988 ~~~~vl~~~sk~i~~~~~~~~i~rsdsnGedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~~ll~~La~lg~ 1067 (1097)
.+ .++.++.+ ...++... ++|+ ..+++++. ..+.|+|++++ +.+|+++|.
T Consensus 233 ---~i---~~~~i~~k--~~~~~~~~----------~gg~-~~~~~~~~------~~~~~~L~~~~-----~~~L~~l~~ 282 (871)
T PRK06241 233 ---KI---IDKTIATK--KLAIYALK----------EGGT-ETKEIEPE------QQKSQTLTDEQ-----ILELARLGR 282 (871)
T ss_pred ---ce---EEEecccc--ceEEEecC----------CCce-EEEECCHH------HhcCCCCCHHH-----HHHHHHHHH
Confidence 23 25556654 11222221 2343 34455433 24578999987 899999999
Q ss_pred HHHHhcCCCeeEEEEEECCeEEEEeeccC
Q 001333 1068 IIESLYGYPQDIEGVLKDGLIYVVQARPQ 1096 (1097)
Q Consensus 1068 ~IE~~fG~PQDIEWai~~g~LyILQaRPq 1096 (1097)
+||++||+|||||||+++|+|||||+||+
T Consensus 283 ~ie~~~g~pqDIEw~~~~~~l~ilQaRPi 311 (871)
T PRK06241 283 KIEAHFGCPQDIEWCLADGTFYILQSRPI 311 (871)
T ss_pred HHHHHcCCCcceEEEEECCEEEEEEcCCc
Confidence 99999999999999999999999999997
No 3
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=100.00 E-value=4.7e-48 Score=476.79 Aligned_cols=287 Identities=26% Similarity=0.415 Sum_probs=235.5
Q ss_pred eeEeCCCCC---CCccchhhHhHHHhhhhCC-CcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHH-
Q 001333 782 YAVSVEDFT---PDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL- 856 (1097)
Q Consensus 782 ~vl~l~e~~---~~~VGgKAanLg~L~~~lp-~g~~VP~GfvIpfgafe~fL~~~~n~~L~~~L~~l~~~l~~~d~~~L- 856 (1097)
++++|+++. ...|||||+||++|++.++ .|++||+|||||+++|++||+++ ++.+.|..+.+.++.++.+.+
T Consensus 1 ~~~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~~VP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~~~~~l~ 77 (782)
T TIGR01418 1 LILWLEEVRKDDVPLVGGKNASLGEMIQNLSPAGVPVPPGFVVTAEAYRYFLEEN---GIAQKIRDLLEELDVEDSEALA 77 (782)
T ss_pred CeeehhhcCcccccccChHHHHHHHHHhhhhhcCCCCCCeEEEcHHHHHHHHHhC---ChHHHHHHHHHhcCcCCHHHHH
Confidence 467777764 4679999999999997322 48999999999999999999988 777778777666666665544
Q ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHH----------------HhcC-------CCCCCCc-------cHHHHHHHHHHH
Q 001333 857 ---QEIQEAVLQMSAPLSLIYELKNKM----------------RSSG-------MPWPGDE-------GWNLAWRSIKKV 903 (1097)
Q Consensus 857 ---~~IR~~I~~~~lP~eL~~eL~~A~----------------RSSg-------~s~AG~~-------g~e~l~~AIK~V 903 (1097)
++||++|+++++|+++.++|..++ |||+ .||||+| +.+++.+|||+|
T Consensus 78 ~~~~~ir~~i~~~~lP~~l~~~l~~a~~~l~~~~g~~~~~vaVRSSa~~ED~~~~SfAGq~~s~l~v~~~~~l~~aik~v 157 (782)
T TIGR01418 78 AASAEIRELILNTPFPPDLEEAIREAYDKLSEDYGKEEADVAVRSSATAEDLPDASFAGQQETYLNVTGEEEVLEHVKKC 157 (782)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcCCcCceEEEECCCCCCCCCCCCcccceeeeecCCCHHHHHHHHHHH
Confidence 799999999999999999998765 3443 3789987 479999999999
Q ss_pred HhcCCChHHHHHHHHcCCCCcccceEEEEEeeecCc--eeEEEEecCCCCCCCcchhhhccccccccccccccCCCceEE
Q 001333 904 WASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFV 981 (1097)
Q Consensus 904 WASlfn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~~i~Iea~~GLGEtLVsG~~Gtpd~f~ 981 (1097)
|||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++++.++|+++|||||+||+|.+ +||+|.
T Consensus 158 ~aS~~~~rA~~Yr~~~g~~~~~~~maVlVQ~mv~~~~~~SGV~fT~~P~~g~~~~~~I~a~~GlGe~vV~G~v-~pD~~~ 236 (782)
T TIGR01418 158 WASLFTDRAISYRVSQGFDHEKVAIAVGVQKMVRSDLGSSGVMFTIDTETGFKDAVFIESAWGLGEAVVGGAV-TPDEYV 236 (782)
T ss_pred HHccCCHHHHHHHHHcCCChhhhCeeEEEEEcccCCCCceeEEEecCCCCCCCCeEEEEEccCCCcccccCCc-CCeEEE
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999986 999999
Q ss_pred EecCCCCC--CcccccccccccccCCceEEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHH
Q 001333 982 TKKNNLKS--PIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVF 1059 (1097)
Q Consensus 982 v~K~~~~~--~~vl~~~sk~i~~~~~~~~i~rsdsnGedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~~ll 1059 (1097)
++|.+... ..+ .++.++.+ ...+++.. .| +.+.....+++++. +.+|+|+|++ +
T Consensus 237 v~r~~~~~~~~~i---~~~~~~~k-~~~~~~~~--~g-------~~~~~~~~~~~~~~------~~~~~L~~~~-----l 292 (782)
T TIGR01418 237 VFKPTLEQGKKAI---LERTLGSK-KIKMVYDP--DG-------GNVETKIVEVPEEE------RDAFSLSDEE-----I 292 (782)
T ss_pred Eecccccccccce---eeeecccc-ceEEEEcc--CC-------CCcceEEEeCCHHH------hhccCCCHHH-----H
Confidence 99876420 012 24455543 22233321 11 11123455555432 4678999998 8
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEEE--CCeEEEEeeccC
Q 001333 1060 SKIAETGKIIESLYGYPQDIEGVLK--DGLIYVVQARPQ 1096 (1097)
Q Consensus 1060 ~~La~lg~~IE~~fG~PQDIEWai~--~g~LyILQaRPq 1096 (1097)
.+|++++.+||++||+|||||||++ +|+|||||+||+
T Consensus 293 ~~La~l~~~lE~~fg~pqDIEWa~~~~~g~l~iLQaRPi 331 (782)
T TIGR01418 293 LELAKLAVLIEKHYGRPMDIEWAKDGFDGEIFIVQARPE 331 (782)
T ss_pred HHHHHHHHHHHHHhCCCceeEEEEECCCCeEEEEEeecc
Confidence 9999999999999999999999999 899999999996
No 4
>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []. Residues at the N terminus correspond to the transit peptide which is indispensable for the transport of the precursor protein into chloroplasts in plants []. This domain is present at the N terminus of some PEP-utilizing enzymes.; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2X0S_A 2OLS_A 1VBH_A ....
Probab=100.00 E-value=1.9e-49 Score=447.00 Aligned_cols=269 Identities=30% Similarity=0.523 Sum_probs=196.3
Q ss_pred CccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCCh----HHHHHHHHHHHcCC
Q 001333 792 DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDL----SKLQEIQEAVLQMS 867 (1097)
Q Consensus 792 ~~VGgKAanLg~L~~~lp~g~~VP~GfvIpfgafe~fL~~~~n~~L~~~L~~l~~~l~~~d~----~~L~~IR~~I~~~~ 867 (1097)
..|||||+||++|++ .+++||+|||||+++|++||+++ ++.+.+..+.+.+...+. +.+++|+++|++.+
T Consensus 4 ~~vGgKa~~L~~L~~---~g~~VP~gfvIt~~~~~~~l~~~---~l~~~i~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 77 (327)
T PF01326_consen 4 SLVGGKAANLAELRR---AGVPVPPGFVITTDAFQEFLESN---GLREEIEQLLEPLDLSDREDLQAISKEIRELILSAP 77 (327)
T ss_dssp HHHHHHHHHHHHHHH---TT-S---EEEE-HHHHHHHHTTC---CHHHHHHHHHHBE-EEEEEECSSHHTTCCHEEEEET
T ss_pred HHCCHHHHHHHHHHH---CCCCCCcEEEecHHHHHHHHHcC---ChHHHHHHHHhhhccccHHHHHHHHHHHHHHHHhCC
Confidence 458999999999997 69999999999999999999887 788888887664433222 34689999999999
Q ss_pred CCHHHHHHHHHHH------------HhcC-------CCCCCCc-------cHHHHHHHHHHHHhcCCChHHHHHHHHcCC
Q 001333 868 APLSLIYELKNKM------------RSSG-------MPWPGDE-------GWNLAWRSIKKVWASKWNERAFISCRKANL 921 (1097)
Q Consensus 868 lP~eL~~eL~~A~------------RSSg-------~s~AG~~-------g~e~l~~AIK~VWASlfn~RAv~yRr~~Gi 921 (1097)
+|+++.++|..++ |||+ .+|||+| +.++|++|||+||||+|++||+.||+++|+
T Consensus 78 lp~~~~~~l~~~~~~~~~~~~~~aVRSSa~~ED~~~~sfAG~~~s~l~v~~~~~l~~Aik~v~aS~f~~ra~~yr~~~g~ 157 (327)
T PF01326_consen 78 LPEELVEELEAALEELGQRDQPLAVRSSATSEDGAEASFAGQYDSVLNVPGEEELLEAIKQVWASLFSPRALAYRRRRGI 157 (327)
T ss_dssp --HHHHHHHHHHHTHHHHHHHHCCCEECE-HHHHH-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTSHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHhcccccccceEEEeccccccccchHHHHHHHHHHhCCChHHHHHHHHHHHHhCcCCHHHHHHHHhcCC
Confidence 9999999999885 3443 3678877 369999999999999999999999999999
Q ss_pred CCcccceEEEEEeeecCceeEEEEecCCCCCCCcc-hhhhccccccccccccccCCCceEEEecCCCCCCcccccccccc
Q 001333 922 NHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSE-IYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLI 1000 (1097)
Q Consensus 922 ~~~~v~MAVLVQemV~ad~SGVlfT~nP~tgd~~~-i~Iea~~GLGEtLVsG~~Gtpd~f~v~K~~~~~~~vl~~~sk~i 1000 (1097)
+++++.|||+||+||++++|||+||+||.+|+.+. ++||+++||||+||+|.+ +|++|++++.++. + ..+.+
T Consensus 158 ~~~~~~maVlVQ~mv~~~~sGV~fT~~p~~g~~~~~~~i~~~~Glge~vV~G~~-~~d~~~v~~~~~~---~---~~~~~ 230 (327)
T PF01326_consen 158 PDEDVGMAVLVQPMVDAEASGVAFTRNPITGEPNEDIVIEAVWGLGESVVSGEV-TPDSFIVSRSDPR---I---REREI 230 (327)
T ss_dssp TTS---EEEEEEE---TTEEEEEESS-TTT--SSEEEEEEEESS-CHHHHHTSS---EECCC--EHHH---H---HEEE-
T ss_pred ChhHhCceeEEEEEecCcceeEEEeeCCCCCCCCcceEEEEccCCCcccccCCC-CCcEEEEEcCCcc---h---hhhhc
Confidence 99999999999999999999999999999999998 999999999999999987 9999999875531 2 12333
Q ss_pred cccCCceEEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHhcCCCeeEE
Q 001333 1001 GLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIE 1080 (1097)
Q Consensus 1001 ~~~~~~~~i~rsdsnGedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~~ll~~La~lg~~IE~~fG~PQDIE 1080 (1097)
+.+ ...++ .. .++|+ ..++++. ++...++|++++ +.+|++++..||++||+|||||
T Consensus 231 ~~k-~~~~~--~~---------~~~~~-~~~~~~~------~~~~~~~l~~~~-----~~~L~~l~~~le~~~g~p~DIE 286 (327)
T PF01326_consen 231 GQK-SVQLV--PD---------EGGGL-EEVDVPE------ERQDSPSLSDEQ-----LQQLAELARKLEEHFGRPQDIE 286 (327)
T ss_dssp ----HCCCC--CC---------CTTTE-ECCCHHH------HCHCHHHHSHHH-----HHHHHHHHHHHHHHHTS-EEEE
T ss_pred CCc-eEEEE--Ec---------CCCce-EEEeCch------hhhhhhhcCHHH-----HHHHHHHHHHHHHHcCCCeEEE
Confidence 322 11111 11 23442 3333332 235668888876 8999999999999999999999
Q ss_pred EEEECCeEEEEeeccCC
Q 001333 1081 GVLKDGLIYVVQARPQM 1097 (1097)
Q Consensus 1081 Wai~~g~LyILQaRPqv 1097 (1097)
||+++|+|||||+||++
T Consensus 287 w~~~~~~l~iLQaRPi~ 303 (327)
T PF01326_consen 287 WAIDGGQLYILQARPIT 303 (327)
T ss_dssp EEEETTEEEEEEEEE--
T ss_pred EEEECCEEEEEEecccc
Confidence 99999999999999984
No 5
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=3.1e-39 Score=381.34 Aligned_cols=246 Identities=18% Similarity=0.281 Sum_probs=195.1
Q ss_pred cCCceeEeCCCCCC---CccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhcc--chhHHHHHHHHHhhhCC--
Q 001333 778 FRGKYAVSVEDFTP---DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFING-- 850 (1097)
Q Consensus 778 ~~~~~vl~l~e~~~---~~VGgKAanLg~L~~~lp~g~~VP~GfvIpfgafe~fL~~~~--n~~L~~~L~~l~~~l~~-- 850 (1097)
+..++++++++... +++|||++||++|++ .++|||+|||||+.+|++|++.+. .+.+++.|....+.++.
T Consensus 4 ~~~~~v~~l~~~~~~~~~~lGgK~a~L~em~~---~glpVP~GFvITt~a~~~f~~~~~~~~~~l~~ei~~~l~~le~~~ 80 (530)
T PRK05878 4 TLENAVVLLDGGANQPRELLGGKGHGIDMMRR---LGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVLDRMRWLEAET 80 (530)
T ss_pred ccCceEEECCCCChhhhhccCHHHHhHHHHHH---CCCCCCCcEEEeHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh
Confidence 45678999998754 689999999999998 699999999999999999998862 23466666554433311
Q ss_pred ----C---ChH----------HHHHHHHHHHcCCCCHHHHHHHHHHHHh------cCCCCCCCcc-------------HH
Q 001333 851 ----G---DLS----------KLQEIQEAVLQMSAPLSLIYELKNKMRS------SGMPWPGDEG-------------WN 894 (1097)
Q Consensus 851 ----~---d~~----------~L~~IR~~I~~~~lP~eL~~eL~~A~RS------Sg~s~AG~~g-------------~e 894 (1097)
+ ++. .+.-+++.|+++.+|++++++|.+.... +..+|+|+|+ ++
T Consensus 81 g~~fg~~~~plllsvrS~a~~S~pGm~dtiLn~gl~d~~~~~l~~~~g~~~~a~D~~~rF~~~y~~vv~~~~~~p~dp~~ 160 (530)
T PRK05878 81 GRTFGRGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEGGDPDFAADTRRRFTEMYRRIVGSGSPPPDDPYE 160 (530)
T ss_pred hhccCCCCCCceEEEccCCCCCCccHhhhhhhcCCCHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHhccCCCCCCChHH
Confidence 1 111 1234999999999999999999764211 1124555551 58
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHcCCCCcccceEEEEEeeecCc-----eeEEEEecCCCCCCCcchhhhccccccccc
Q 001333 895 LAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD-----YAFVIHTKNPLSGDNSEIYTEIVKGLGETL 969 (1097)
Q Consensus 895 ~l~~AIK~VWASlfn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad-----~SGVlfT~nP~tgd~~~i~Iea~~GLGEtL 969 (1097)
++..|||.||||+||+||+.||+++|++++. .|||+||+||.++ .|||+||+||.+|++..+.+.+++|+||.|
T Consensus 161 qL~~Aik~V~aS~~s~rA~~YR~~~gi~~~~-~mAV~VQ~MV~g~~~~~s~sGV~FT~dP~tg~~~~~~~~~~~GlGe~v 239 (530)
T PRK05878 161 QLRAAIEAVFASWNSPRAVAYRRHHGLDDDG-GTAVVVQAMVFGNLDANSGTGVLFSRNPITGANEPFGEWLPGGQGEDV 239 (530)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCCccc-CcEEEEEeCccCCCCCCcceEEEEeCCCCCCCCcEEEEEcCCCCCHHH
Confidence 9999999999999999999999999998754 8999999999664 589999999999998888888899999999
Q ss_pred cccccCCCceEEEecCCCCCCcccccccccccccCCceEEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCc
Q 001333 970 VGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMV 1049 (1097)
Q Consensus 970 VsG~~Gtpd~f~v~K~~~~~~~vl~~~sk~i~~~~~~~~i~rsdsnGedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plL 1049 (1097)
|+|.+ +|+.|.+.+. ..|
T Consensus 240 VsG~~-~p~~~~~~~~-----------------------------------------------------------~~p-- 257 (530)
T PRK05878 240 VSGLV-DVAPITALRD-----------------------------------------------------------EQP-- 257 (530)
T ss_pred hcCCc-CCcchhhhcc-----------------------------------------------------------cCH--
Confidence 99876 5543322110 001
Q ss_pred CCcccchHHHHHHHHHHHHHHHhcCCCeeEEEEEECCeEEEEeeccC
Q 001333 1050 GDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ 1096 (1097)
Q Consensus 1050 tD~~~r~~ll~~La~lg~~IE~~fG~PQDIEWai~~g~LyILQaRPq 1096 (1097)
..+.+|++++..||++||.||||||+|++|+|||||+||.
T Consensus 258 -------~~~~eL~~~a~~LE~~fg~pqDIEfai~~g~L~iLQaRp~ 297 (530)
T PRK05878 258 -------AVYDELMAAARTLERLGRDVQDIEFTVESGKLWLLQTRSA 297 (530)
T ss_pred -------HHHHHHHHHHHHHHHHcCCceeEEEEEECCEEEEEEeecc
Confidence 1267899999999999999999999999999999999995
No 6
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-37 Score=379.33 Aligned_cols=278 Identities=26% Similarity=0.429 Sum_probs=222.4
Q ss_pred eeEeCCCC---CCCccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHH--
Q 001333 782 YAVSVEDF---TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL-- 856 (1097)
Q Consensus 782 ~vl~l~e~---~~~~VGgKAanLg~L~~~lp~g~~VP~GfvIpfgafe~fL~~~~n~~L~~~L~~l~~~l~~~d~~~L-- 856 (1097)
++.++.+. +..++|||++||++|.+ .|++||+|||||+.+|+.|++.+ ++.+.+...+..++..+...+
T Consensus 4 ~~~~~~e~~~~~~~lvGgKga~L~Em~~---~Gl~VP~GF~itt~a~~~f~~~~---~~~~~~~~~l~~~~~~~~~~l~~ 77 (740)
T COG0574 4 LILWLDEVKLEDVGLVGGKGASLGEMLK---MGLPVPPGFAITSEAYRYFLKEN---GLADKILKILSALDLNDNVELEF 77 (740)
T ss_pred cccchhhcCcchhhhcCCccCCHHHHHh---CCCCCCCeEEEeHHHHHHHHhcc---chHHHHHHHhcCCCcchhHHHHH
Confidence 44555554 35799999999999998 69999999999999999999987 677777766655544444333
Q ss_pred --HHHHHHHHcCCCCHHHHHHHHHHHHh---------------cC-------CCCCCCc-------cHHHHHHHHHHHHh
Q 001333 857 --QEIQEAVLQMSAPLSLIYELKNKMRS---------------SG-------MPWPGDE-------GWNLAWRSIKKVWA 905 (1097)
Q Consensus 857 --~~IR~~I~~~~lP~eL~~eL~~A~RS---------------Sg-------~s~AG~~-------g~e~l~~AIK~VWA 905 (1097)
..++..|+..++|+++.++|.+++.. |+ .+|+||. +.++++.+|++|||
T Consensus 78 ~~~~~~~~i~~~~~p~~l~~ei~~al~~~~~~~~~~~~~avrss~taedL~~~sFagq~~t~lni~~~e~l~~~i~~~~a 157 (740)
T COG0574 78 RSELIRPLIMPTPLPEDLSAEIAEALEELTGYGDSDADVAVRSSATAEDLPGASFAGQQETYLNVDGIEDLLEAIKKCWA 157 (740)
T ss_pred HHHHHHhhhccCCCChHHHHHHHHHHHHhccccccceeEEEeeccccccCCcccccccccccCCcCCHHHHHHHHHHHHH
Confidence 68999999999999999999988743 22 2578855 58999999999999
Q ss_pred cCCChHHHHHHHHcCCCCcccceEEEEEeeecCc--eeEEEEecCCCCCCCcchhhhccccccccccccccCCCceEEEe
Q 001333 906 SKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTK 983 (1097)
Q Consensus 906 Slfn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~~i~Iea~~GLGEtLVsG~~Gtpd~f~v~ 983 (1097)
|+||+||+.||..+|+++..+.|||+||+||.++ .||||||+||.||....+.+++.+||||.+|+|.+ +|+.|++.
T Consensus 158 Sl~~~RAi~Yr~~~~~~~~~~~laV~VQ~MV~~~~~~sGV~FT~~P~tg~~~~~~i~~~~glGE~vV~G~v-tpd~~~~~ 236 (740)
T COG0574 158 SLFVDRAIAYRYHNGIDHSELGLAVVVQKMVFSDLGESGVMFTIDPITGERDVVVIESSWGLGEDVVDGQV-TPDEYYVS 236 (740)
T ss_pred hhcchhHHHHHHHcCCcchhhceEEEEeeeeccCCCceeEEEecCCccCCcceEEEEccccCccceEEEEE-cCceEEEe
Confidence 9999999999999999999999999999999999 99999999999999999999999999999999998 99999999
Q ss_pred cCCCCCCcccccccccccccCCceEEeecCCCCcccccccCCCce-eeeecCCccccccccCCCCCcCCcccchHHHHHH
Q 001333 984 KNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLY-DSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKI 1062 (1097)
Q Consensus 984 K~~~~~~~vl~~~sk~i~~~~~~~~i~rsdsnGedLe~~ag~Gl~-~svp~~~~~~~~vdy~~~plLtD~~~r~~ll~~L 1062 (1097)
|++. ..+ ..+++.. .+++..+. +.+.+ +..+++.+ ...+..++|.. +.+|
T Consensus 237 k~~~-~~~--~~~~~~~------~~i~~~~~---------~e~~~~~~~ev~~~------~~~~~~l~~~~-----i~~l 287 (740)
T COG0574 237 KDTL-VEK--ALPSKLI------KLIYDADK---------LEGHRARIEEIEDE------FTDAFSLSDEE-----IKRL 287 (740)
T ss_pred ccch-hhh--hhhHHHH------HHHHHhhc---------ccceeeeeccCChH------HhhhhhccHHH-----HHHH
Confidence 9653 000 1122211 22221110 11111 12222211 23456777776 7999
Q ss_pred HHHHHHHHHhcCCCeeEEEEEECCeEEEEeeccC
Q 001333 1063 AETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ 1096 (1097)
Q Consensus 1063 a~lg~~IE~~fG~PQDIEWai~~g~LyILQaRPq 1096 (1097)
++++..||.+|+.||||||++++ ++||+|+||.
T Consensus 288 a~~~~~ie~~~~~p~diEw~id~-~~~ilq~rP~ 320 (740)
T COG0574 288 AKLAIKIEKHYGRPMDIEWAIDG-KLYILQARPE 320 (740)
T ss_pred HHHHHHHHHhhCCchhhhhhhcC-ceEEEEecCc
Confidence 99999999999999999999999 8999999996
No 7
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=100.00 E-value=8.5e-35 Score=360.05 Aligned_cols=242 Identities=19% Similarity=0.285 Sum_probs=187.8
Q ss_pred ceeEeCCCCCC---CccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhcc--chhHHHHHHHHHhhhC------
Q 001333 781 KYAVSVEDFTP---DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFIN------ 849 (1097)
Q Consensus 781 ~~vl~l~e~~~---~~VGgKAanLg~L~~~lp~g~~VP~GfvIpfgafe~fL~~~~--n~~L~~~L~~l~~~l~------ 849 (1097)
++++++++.+. .++|||++||++|.+ .|+|||+||+||+.+|+.|++.+. ..++++.|....+.++
T Consensus 2 ~~v~~~~~~~~~~~~~~GgK~a~L~em~~---~glpVPpGFviTt~a~~~~~~~~~~~~~~l~~~i~~~~~~le~~~g~~ 78 (856)
T TIGR01828 2 KRVYAFGEGNASMKNLLGGKGANLAEMTK---LGLPVPPGFTITTEACNEYYANGKQFPKGLQEEIKEALTLLEEKTGKK 78 (856)
T ss_pred CeEEECCCCCchhhhhcCHHHHhHHHHHh---CCCCCCCcEEEeHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHhCcc
Confidence 47888888754 579999999999998 599999999999999999999873 2346666655444332
Q ss_pred ---CCChH----------HHHHHHHHHHcCCCCHHHHHHHHH-------HH---H--------------hc---------
Q 001333 850 ---GGDLS----------KLQEIQEAVLQMSAPLSLIYELKN-------KM---R--------------SS--------- 883 (1097)
Q Consensus 850 ---~~d~~----------~L~~IR~~I~~~~lP~eL~~eL~~-------A~---R--------------SS--------- 883 (1097)
.+++. .+..+++.|+++.+|++++++|.+ ++ | ++
T Consensus 79 fg~~~~PllvsvrS~a~~smpgm~~tiLn~glnd~~~~~l~~~~g~~~fa~d~yrRfi~~~g~vvl~v~~~~f~~~~~~~ 158 (856)
T TIGR01828 79 FGDTENPLLVSVRSGAAVSMPGMMDTILNLGLNDETVEGLAKLTGNARFAYDSYRRFIQMFGDVVLGIPHELFEQILEAM 158 (856)
T ss_pred cCCCCCcceEEeccCCCCCCccHHHHHHhCCCCHHHHHHHHHhhCChHHHHHHHHHHHhhhcccccCCCchhHHHHHHHH
Confidence 11221 124899999999999999999987 32 2 11
Q ss_pred ----C------CC----------CCCCc-----------cHHHHHHHHHHHHhcCCChHHHHHHHHcCCCCcccceEEEE
Q 001333 884 ----G------MP----------WPGDE-----------GWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLI 932 (1097)
Q Consensus 884 ----g------~s----------~AG~~-----------g~e~l~~AIK~VWASlfn~RAv~yRr~~Gi~~~~v~MAVLV 932 (1097)
| .+ |+|+| .++++..||+.||||+||+||+.||+.+|++++ ..|||+|
T Consensus 159 ~~~~~~~~d~~~s~~~~~~l~~~f~~~~~~~~g~~f~~~p~~qL~~Ai~~V~aS~~s~rA~~YR~~~gi~~~-~~~aV~V 237 (856)
T TIGR01828 159 KEEKGVKLDTDLTADDLKELIEKYKAIYREATGKPFPQDPKEQLELAIKAVFDSWNNPRAIVYRRLNDIPED-WGTAVNI 237 (856)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCChHHHHHHHhcCCCcc-cCcEEEE
Confidence 1 11 33333 278999999999999999999999999999996 8999999
Q ss_pred EeeecCc-----eeEEEEecCCCCCCCcchhhhcc-ccccccccccccCCCceEEEecCCCCCCcccccccccccccCCc
Q 001333 933 QETICGD-----YAFVIHTKNPLSGDNSEIYTEIV-KGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKP 1006 (1097)
Q Consensus 933 QemV~ad-----~SGVlfT~nP~tgd~~~i~Iea~-~GLGEtLVsG~~Gtpd~f~v~K~~~~~~~vl~~~sk~i~~~~~~ 1006 (1097)
|+||.++ .|||+||+||.||+.. ++++.. .|+||.+|+|.+ +|+.|...+
T Consensus 238 Q~MV~g~~~~~s~SGV~FTrdP~tg~~~-~~g~~~i~a~ge~vVsG~~-tp~~~~~~~---------------------- 293 (856)
T TIGR01828 238 QSMVFGNMGETSGTGVAFTRNPSTGEKG-LFGEFLINAQGEDVVAGIR-TPQPITAME---------------------- 293 (856)
T ss_pred EEeecCCCCCCceeEEEEeCCCCCCCCc-ceEEEEEcCCCchhccccc-CcHHHHHhh----------------------
Confidence 9999664 7999999999999764 444433 469999999875 443221100
Q ss_pred eEEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHhcCCCeeEEEEEECC
Q 001333 1007 SIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDG 1086 (1097)
Q Consensus 1007 ~~i~rsdsnGedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~~ll~~La~lg~~IE~~fG~PQDIEWai~~g 1086 (1097)
-+.++ .+.+|++++..||++||.|||||||+++|
T Consensus 294 -----------------------------------------~~~p~-----~~~~L~~~a~~lE~~fg~pqDIEfai~~g 327 (856)
T TIGR01828 294 -----------------------------------------ADMPD-----VYKELLDIAEKLEGHYRDMQDIEFTIERG 327 (856)
T ss_pred -----------------------------------------hcChH-----HHHHHHHHHHHHHHHcCCcccceEEEECC
Confidence 00111 27899999999999999999999999999
Q ss_pred eEEEEeeccC
Q 001333 1087 LIYVVQARPQ 1096 (1097)
Q Consensus 1087 ~LyILQaRPq 1096 (1097)
+|||||+||.
T Consensus 328 ~L~iLQ~RP~ 337 (856)
T TIGR01828 328 KLYMLQTRNG 337 (856)
T ss_pred EEEEEEeecC
Confidence 9999999994
No 8
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=99.97 E-value=1.3e-31 Score=330.99 Aligned_cols=242 Identities=24% Similarity=0.384 Sum_probs=179.2
Q ss_pred CceeEeCCC----C---CCCccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhcc--chhHHHHH----HHHHh
Q 001333 780 GKYAVSVED----F---TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKI----SRLYK 846 (1097)
Q Consensus 780 ~~~vl~l~e----~---~~~~VGgKAanLg~L~~~lp~g~~VP~GfvIpfgafe~fL~~~~--n~~L~~~L----~~l~~ 846 (1097)
.++++++++ . ..+++|||++||++|.+ .|+|||+||+||+++|++|++... .+++++.+ ..|..
T Consensus 3 ~~~v~~f~~~~~~~~~~~~~llGgKga~L~em~~---~glpVPpgF~itt~ac~~~~~~~~~~~~~l~~~i~~~l~~lE~ 79 (879)
T PRK09279 3 KKYVYLFGGGKAEGNASMKDLLGGKGANLAEMTN---LGLPVPPGFTITTEACNEYYANGKKLPEGLKEEVKEALAKLEE 79 (879)
T ss_pred cceEEEeCCCCcccChhHHhhcCHHHHhHHHHHH---CCCCCCCcEEEcHHHHHHHHhcCccCcHHHHHHHHHHHHHHHH
Confidence 367777743 2 23789999999999998 699999999999999999998762 33454444 33333
Q ss_pred hhCC--CChH-------------HHHHHHHHHHcCCCCHHHHHHHHHH----------HH----hc--------------
Q 001333 847 FING--GDLS-------------KLQEIQEAVLQMSAPLSLIYELKNK----------MR----SS-------------- 883 (1097)
Q Consensus 847 ~l~~--~d~~-------------~L~~IR~~I~~~~lP~eL~~eL~~A----------~R----SS-------------- 883 (1097)
..+. ++.+ ...-+.+.|+++-+.++.+..|.+. || +.
T Consensus 80 ~~g~~fg~~~~PLLvSVRSga~~SmPGmmdTiLNlGlnd~~~~~la~~tg~~~fa~d~yrRfiq~~~~vv~gi~~~~fe~ 159 (879)
T PRK09279 80 LTGKKFGDPENPLLVSVRSGARVSMPGMMDTVLNLGLNDETVEGLAKKTGNERFAYDSYRRFIQMFGDVVLGIDHELFEE 159 (879)
T ss_pred HhCcccCCCCCceeEEEecCCCCCCCCcchhhhcCCCCHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 2221 1211 1235667777777777777666542 11 11
Q ss_pred -------------------------------------CCCCCCCccHHHHHHHHHHHHhcCCChHHHHHHHHcCCCCccc
Q 001333 884 -------------------------------------GMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNL 926 (1097)
Q Consensus 884 -------------------------------------g~s~AG~~g~e~l~~AIK~VWASlfn~RAv~yRr~~Gi~~~~v 926 (1097)
|.+|| ++-++++..||+.||+|+||+||+.||+.+|++++ .
T Consensus 160 ~~~~~k~~~~~~~~~~l~~~~l~~l~~~~k~~~~~~~g~~fp-~dp~~QL~~AI~aV~~S~~s~rA~~YR~~~gi~~~-~ 237 (879)
T PRK09279 160 ILEELKEKKGVKLDTDLTAEDLKELVERYKEIVKEETGKPFP-QDPYEQLWGAIGAVFRSWNNPRAITYRRLNNIPED-W 237 (879)
T ss_pred HHHHHHHHcCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHHhhcChHHHHHHHhcCCCcc-c
Confidence 11122 11388999999999999999999999999999986 8
Q ss_pred ceEEEEEeeecCc-----eeEEEEecCCCCCCCcchhhhc-cccccccccccccCCCceEEEecCCCCCCcccccccccc
Q 001333 927 CMAVLIQETICGD-----YAFVIHTKNPLSGDNSEIYTEI-VKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLI 1000 (1097)
Q Consensus 927 ~MAVLVQemV~ad-----~SGVlfT~nP~tgd~~~i~Iea-~~GLGEtLVsG~~Gtpd~f~v~K~~~~~~~vl~~~sk~i 1000 (1097)
.|||+||+||.++ .|||+||+||.||++. ++++. +.|+||.||+|.+ +|+.|. .
T Consensus 238 g~AV~VQ~MV~gn~~~~s~SGV~FTrdP~TG~~~-~~Ge~l~~aqGedVVsG~~-tp~~~~----~-------------- 297 (879)
T PRK09279 238 GTAVNVQAMVFGNMGEDSGTGVAFTRNPSTGEKK-LYGEFLINAQGEDVVAGIR-TPQPIP----S-------------- 297 (879)
T ss_pred CceEEEEeccccCCCCCcceEEEEeCCCCCCCCc-eeEEEecCCCChhhhcCcc-CcchhH----H--------------
Confidence 9999999999766 6999999999999864 44444 5789999999876 554320 0
Q ss_pred cccCCceEEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHhcCCCeeEE
Q 001333 1001 GLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIE 1080 (1097)
Q Consensus 1001 ~~~~~~~~i~rsdsnGedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~~ll~~La~lg~~IE~~fG~PQDIE 1080 (1097)
+ + .. .++ .+++|++++..||++||.|||||
T Consensus 298 -l-----------------~--------------------------~~-~p~-----~~~~L~~~~~~LE~~f~~pqDIE 327 (879)
T PRK09279 298 -L-----------------E--------------------------EA-MPE-----VYAELVDIAKKLEKHYRDMQDIE 327 (879)
T ss_pred -H-----------------h--------------------------hc-ChH-----HHHHHHHHHHHHHHHhCCCeeeE
Confidence 0 0 00 011 27899999999999999999999
Q ss_pred EEEECCeEEEEeeccC
Q 001333 1081 GVLKDGLIYVVQARPQ 1096 (1097)
Q Consensus 1081 Wai~~g~LyILQaRPq 1096 (1097)
|+|++|+|||||+||.
T Consensus 328 ftie~g~L~iLQtRp~ 343 (879)
T PRK09279 328 FTIERGKLYMLQTRNG 343 (879)
T ss_pred EEEECCEEEEEEeCCc
Confidence 9999999999999994
No 9
>PRK05849 hypothetical protein; Provisional
Probab=99.93 E-value=8.2e-26 Score=277.03 Aligned_cols=193 Identities=20% Similarity=0.171 Sum_probs=141.9
Q ss_pred CCccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHHHHHHHHHHcCCCCH
Q 001333 791 PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPL 870 (1097)
Q Consensus 791 ~~~VGgKAanLg~L~~~lp~g~~VP~GfvIpfgafe~fL~~~~n~~L~~~L~~l~~~l~~~d~~~L~~IR~~I~~~~lP~ 870 (1097)
.-.+|+||++|+.|++++ .+++||+++++|...+.+ . ....++ .|+..+ +
T Consensus 5 ~~~~~~KA~tL~~L~~~~-~~~~i~~~~v~~~~e~~~---~-----~~~~~~---------------~i~~~~-----~- 54 (783)
T PRK05849 5 ELFFQTKAETLANLQPIL-KKAKILPLLLFSVREWLS---N-----KDKVLE---------------EIQNSF-----P- 54 (783)
T ss_pred ccccchHHHHHHHHHhhh-cCCCCCCeEEeCHHhhcc---C-----HHHHHH---------------HHHHhc-----C-
Confidence 346899999999999866 689999999999864322 1 111111 121111 0
Q ss_pred HHHHHHHHHHHhcC-------CCCCCCcc---------HHHHHHHHHHHHhcCCChHHHHHHHHcCCCCcccceEEEEEe
Q 001333 871 SLIYELKNKMRSSG-------MPWPGDEG---------WNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQE 934 (1097)
Q Consensus 871 eL~~eL~~A~RSSg-------~s~AG~~g---------~e~l~~AIK~VWASlfn~RAv~yRr~~Gi~~~~v~MAVLVQe 934 (1097)
.-.-++|||+ .||||+|. .+++..||++||||+++ ++ .|||+||+
T Consensus 55 ----~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~~~~~L~~AI~~V~aS~~~-----------~~----~~aVlVQ~ 115 (783)
T PRK05849 55 ----ADKLIVRSSSRSEDSSSSSNAGAFLSILNVNADSKDQLLKAIEKVIASYGT-----------SK----DDEILVQP 115 (783)
T ss_pred ----CCeEEEECCCcccCCCcCccccCceeEecCCCCcHHHHHHHHHHHHHhhCC-----------CC----CCeEEEEe
Confidence 0023568875 47999981 55999999999999766 22 38999999
Q ss_pred eec-CceeEEEEecCCCCCCCcchhhhccccccccccccccCCCceEEEecCCCCCCcccccccccccccCCceEEeecC
Q 001333 935 TIC-GDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSD 1013 (1097)
Q Consensus 935 mV~-ad~SGVlfT~nP~tgd~~~i~Iea~~GLGEtLVsG~~Gtpd~f~v~K~~~~~~~vl~~~sk~i~~~~~~~~i~rsd 1013 (1097)
||. +.+|||+||+||.+|++..+...+++|+||.||+|.+ +|..+.+.+.+
T Consensus 116 MV~~~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~-t~~~~~~~~~~--------------------------- 167 (783)
T PRK05849 116 MLEDIVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSG-GSATTVYHYRD--------------------------- 167 (783)
T ss_pred CccCCCceEEEEECCCCCCCCceEEEEcCCCCCcceecccC-CCCceeeeccc---------------------------
Confidence 998 6999999999999998766544455899999999975 55444332100
Q ss_pred CCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHhcCC-CeeEEEEE-ECCeEEEE
Q 001333 1014 SNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGY-PQDIEGVL-KDGLIYVV 1091 (1097)
Q Consensus 1014 snGedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~~ll~~La~lg~~IE~~fG~-PQDIEWai-~~g~LyIL 1091 (1097)
.++++++. +++|+++++.||++||+ |||||||+ ++|+||||
T Consensus 168 --------------------------------~~~l~p~~-----~~~L~~la~~LE~~fg~dpqDIEfaid~~g~L~lL 210 (783)
T PRK05849 168 --------------------------------ALVFKPPR-----LKKLIELIRELEALFGCDFLDIEFAIDEKEELYIL 210 (783)
T ss_pred --------------------------------cccCCHHH-----HHHHHHHHHHHHHHcCCCCeeeEEEEccCCEEEEE
Confidence 01223333 78999999999999986 99999999 58999999
Q ss_pred eeccCC
Q 001333 1092 QARPQM 1097 (1097)
Q Consensus 1092 QaRPqv 1097 (1097)
|+||..
T Consensus 211 Q~RPi~ 216 (783)
T PRK05849 211 QVRPIT 216 (783)
T ss_pred EccCCC
Confidence 999963
No 10
>PLN02784 alpha-amylase
Probab=99.92 E-value=1.1e-25 Score=272.89 Aligned_cols=136 Identities=24% Similarity=0.454 Sum_probs=123.0
Q ss_pred hHHHHHHhhcCCCceEEeeeEecc-eE-----EEEEE-EecCCceEEEEEEccCCCeEEEeeeecCC--CCcccCCCCCC
Q 001333 50 SFVALVENSLGADNVISRQSYHMD-HE-----IVVLS-KIISSDYHILVAVNMKGAAILHWGISKCS--PGEWLSPPPDM 120 (1097)
Q Consensus 50 ~~a~~~~~~~~~~~v~~~~~f~l~-~e-----l~V~v-~~~~~~~~V~v~td~~~~lvLHWGv~~~~--~~eW~~PP~~~ 120 (1097)
...++++|+.+.++|++||+|+|+ .| +.|++ ++.+|+++|+|+||+|++|||||||++++ ++||.+||+++
T Consensus 62 ~~~~~~~~~~~~~~v~~kk~F~v~~~e~ve~~~~v~l~~~~~g~~kv~v~t~~~~~~vLHWGVs~~~~~~~EW~~PP~~~ 141 (894)
T PLN02784 62 SSDTALVETAQSDDVFFKETFPVKRTEKVEGKIYVRLEEKNEKNWKLSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEEM 141 (894)
T ss_pred ccceeeeeccccccceeeeeeeecccceecceeEEEEEccCCCcEEEEEEecCCCCeEEEEeEecCCCCCccccCCCccc
Confidence 345566788889999999999999 65 55555 68999999999999999999999999987 69999999999
Q ss_pred CCCccccc-cceeeeeeeeccCCCcceeE-EEEEccCCceeEEEEEEec--CCcccccCCcceEEecCCC
Q 001333 121 LPEKSKMV-AGACQTYFTDIATARGSFQM-VDVNLQKRKFVGIQFVIWS--GGSWIKNNGENFFVGLHPM 186 (1097)
Q Consensus 121 ~P~gS~~~-~~A~eT~f~~~~~~~~~~~~-lei~l~~~~~~gi~FVLk~--~~~W~kn~G~DF~V~l~~~ 186 (1097)
+||||+.+ ++||||||++++.+..++++ |+|+++ +.|.||+|||++ +|+||||||+||||||+..
T Consensus 142 ~PpgS~~~~~~A~eT~f~~~s~~~~~~~v~iel~l~-~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~ 210 (894)
T PLN02784 142 RPPGSIAIKDYAIETPLKKSSEGDSFYEVTIDLDPN-SSIAAINFVLKDEETGAWYQHKGRDFKVPLVDD 210 (894)
T ss_pred CCCCcEEecCeEEeccccccccCCcceeEEEEEeeC-CceeeEEEEEEeCCCCchhhcCCccEEEecccc
Confidence 99999999 89999999999888888876 888888 799999999999 5999999999999999975
No 11
>PLN02784 alpha-amylase
Probab=99.89 E-value=4.7e-23 Score=250.25 Aligned_cols=113 Identities=24% Similarity=0.500 Sum_probs=103.4
Q ss_pred eEEEEEEEe--cCCceEEEEEEccCCCeEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeeeccCCCcceeEEEE
Q 001333 74 HEIVVLSKI--ISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDV 151 (1097)
Q Consensus 74 ~el~V~v~~--~~~~~~V~v~td~~~~lvLHWGv~~~~~~eW~~PP~~~~P~gS~~~~~A~eT~f~~~~~~~~~~~~lei 151 (1097)
..+.|+|++ ++++++|+|+||+|+++||||||||++++||.+||++++|++|+..+|||||||++++++.++++.+++
T Consensus 282 ~~~~v~v~~~~~~~k~~v~v~td~~~~vvlHWgV~k~~~~eW~~Pp~~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~~~l 361 (894)
T PLN02784 282 NSVTVTVRKCPETAKNLVYLETDLPGDVVVHWGVCKDGAKTWEIPPEPHPPETSLFKNKALQTMLQQKDDGNGSSGLFSL 361 (894)
T ss_pred ceEEEEEecCCCCCceEEEEEcCCCCCEEEEeEeccCCCCcccCCCCCCCCCcceecccccccccccccCCCcceEEEec
Confidence 578888874 889999999999999999999999999999999999999999997799999999999888888887666
Q ss_pred EccCCceeEEEEEEec-CCcccccCCcceEEecCCCCCc
Q 001333 152 NLQKRKFVGIQFVIWS-GGSWIKNNGENFFVGLHPMDPK 189 (1097)
Q Consensus 152 ~l~~~~~~gi~FVLk~-~~~W~kn~G~DF~V~l~~~~~~ 189 (1097)
++.+.||+|||++ +|+||||+|+||||||+.+++.
T Consensus 362 ---d~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl~~~~~~ 397 (894)
T PLN02784 362 ---DGELEGLLFVLKLNEGTWLRCNGNDFYVPLLTSSSL 397 (894)
T ss_pred ---CCCeeEEEEEEECCCCchhhcCCccEEEeCCchhcc
Confidence 4799999999999 5999999999999999987543
No 12
>PRK05849 hypothetical protein; Provisional
Probab=96.65 E-value=0.023 Score=72.14 Aligned_cols=175 Identities=13% Similarity=0.092 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHH----HHhhCchHHHhhhhcCccchhhccccHHHHhhhhhHH----HHHHHhhhhHH
Q 001333 566 ALQAKAILDRLQLVLA--ERSQTY----QKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAV----LSILINRFEPV 635 (1097)
Q Consensus 566 AL~~kA~ldR~rr~~~--~~~~~~----~~~~~~~a~~lG~~lg~e~~~v~~FtEe~IR~~~~f~----lS~l~~~l~p~ 635 (1097)
...++..++++|.+++ +++-.. ....-.....+|..||+++.-+--++-++|++...-. ....+..+-..
T Consensus 571 ~~~~~~ll~~~r~~i~~RE~~Kf~~tr~l~~~r~~l~~lG~~Lg~~~dDvf~L~~~El~~~~~~~~~~~~~~~l~~~i~~ 650 (783)
T PRK05849 571 NIDAEEFLDFLKEAIEGRELVKFEFTRNLSDALELIALLGAYYGISREDLSHLDIKDLLNLYSSLLSINPKELFLEEIKR 650 (783)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeecHHHHHHHHhccccccchhhHHHHHHH
Confidence 3557888888888877 333222 2222333446788889877766666776676532110 11222111111
Q ss_pred HHHH----h--cCC-----------------CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccc-c-CC
Q 001333 636 LRKV----A--NLG-----------------CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEE-I-PV 690 (1097)
Q Consensus 636 lr~~----a--~~~-----------------~wqvispG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EE-I-P~ 690 (1097)
.++. . ... .=..++||.+.|.++++..-. . ....-.|||+..+|=.=. + ..
T Consensus 651 rk~~~~~~~~~~~P~li~~~~~~~~~~~~~~~~n~is~g~v~g~v~v~~~~~---~-~~~~G~Ilv~~~tdPg~~~lf~~ 726 (783)
T PRK05849 651 NKQEYELTRSLKLPPLICSADDVYSFEIHESKPNFITQKRVEATVADLDNDN---D-DDLEGKIVCIENADPGYDWLFTK 726 (783)
T ss_pred HHHHHHHHhcCCCCCeeccCCccccccccCCCCCCccCCEEEEEEEEecChh---h-cCCCCCEEEeCCCCccchHHHhh
Confidence 1110 0 000 002379999999999987542 1 112456999986553111 1 12
Q ss_pred CcEEEecCCCCCCcchhhhhcccCCceeeEecchHHHHHHHhcCCCeEEEEEcCCce
Q 001333 691 GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 747 (1097)
Q Consensus 691 ~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~~ 747 (1097)
+++||||..-+ ..||.+++||..|||-+.--.....+.+ .+|+.|.+......|
T Consensus 727 ~i~g~Vte~Gg-~~SH~AI~ARe~gIPavvg~~~~~~~~~--~~g~~v~vDg~~G~v 780 (783)
T PRK05849 727 GIAGLITCYGG-ANSHMAIRAAELGLPAVIGVGEELFEKW--LKAKRILLDCASQRI 780 (783)
T ss_pred heeEEEEcCCC-cccHHHHHHHHcCCCEEEccCcchhhhc--cCCCEEEEECCCCEE
Confidence 69999998876 8999999999999999653221112222 368888887665444
No 13
>PRK08296 hypothetical protein; Provisional
Probab=95.94 E-value=0.014 Score=72.13 Aligned_cols=98 Identities=18% Similarity=0.144 Sum_probs=70.5
Q ss_pred cEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEecCCCCCCcchhhhhcccCCceeeEec
Q 001333 645 WQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCF 722 (1097)
Q Consensus 645 wqvispG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP--~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~ 722 (1097)
=..+|||.+.|.+++|....+.. ....+.|||+...+-.. +| ..+.||||..-. .+||.++.||+.|||-+..-
T Consensus 502 G~~~s~G~v~G~vrvv~~~~~~~--~~~~g~ILV~~~tdP~~-~~~~~~~~GiVte~Gg-~~SHaAIvARe~GIPaVvgv 577 (603)
T PRK08296 502 GFAASPGVVEGPARVIRSADELS--EVQEGEILVCPVTSPSW-APIFAKIKATVTDIGG-VMSHAAIVCREYGLPAVVGT 577 (603)
T ss_pred eeecCCCeEEEEEEEeCCHHHHH--hccCceEEEeCCCCHHH-HHHHHHheEEEEecCC-CcchHHHHHHHcCCCEEEcC
Confidence 34469999999999998866542 23467899998544322 44 269999998765 89999999999999987654
Q ss_pred chHHHHHHHhcCCCeEEEEEcCCceEE
Q 001333 723 DQNILRNLRLKEGKAVSIRLKSTNLII 749 (1097)
Q Consensus 723 d~~~~~~l~~l~Gk~V~l~vs~~~~~l 749 (1097)
.. ... +-.+|..|.+..+...|.+
T Consensus 578 ~~-at~--~l~dG~~V~vDg~~G~V~i 601 (603)
T PRK08296 578 GN-ATK--RIKTGQRLRVDGTKGVVTI 601 (603)
T ss_pred cc-Hhh--hcCCCCEEEEECCCCEEEE
Confidence 42 111 2247999998877655543
No 14
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=95.84 E-value=0.0089 Score=54.99 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=47.7
Q ss_pred CCCeEEEEeCCCCcccc-C-CCcEEEecCCCCCCcchhhhhcccCCceeeEecchHHHHHHHhcCCCeEEEEEc
Q 001333 672 RRPTIIIASRITGEEEI-P-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLK 743 (1097)
Q Consensus 672 ~~p~Ill~~~~~G~EEI-P-~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs 743 (1097)
.+++||+++..+-.+-. . .+++||||.+-. ++||.++.||.+|||.+.--.. ... .-.+|.+|.+..+
T Consensus 9 ~~~~IlV~~~~~p~~~~~~~~~~~Giv~~~Gg-~~SH~aIlAr~~giP~ivg~~~-~~~--~i~~g~~v~lDg~ 78 (80)
T PF00391_consen 9 PEGVILVAEELTPSDLALDLQRVAGIVTEEGG-PTSHAAILARELGIPAIVGVGD-ATE--AIKDGDWVTLDGN 78 (80)
T ss_dssp TSTEEEEESS--TTCHHSHHTTSSEEEESSSS-TTSHHHHHHHHTT-EEEESTTT-HHH--HSCTTEEEEEETT
T ss_pred CCCEEEEECCCCHHHHhcchhheEEEEEEcCC-ccchHHHHHHHcCCCEEEeecc-Hhh--ccCCCCEEEEECC
Confidence 46789999976666533 1 379999998875 8999999999999999776542 222 2236888887543
No 15
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=95.42 E-value=0.024 Score=73.17 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=69.1
Q ss_pred eeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCCcchhhhhcccCCceeeEecchH
Q 001333 648 ISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQN 725 (1097)
Q Consensus 648 ispG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~ 725 (1097)
+++|.+.|.++++....+. ......|||+...++. ..|. .+.||||..-+ .+||.+|.||..|||-++.-..
T Consensus 773 ~~~G~v~G~v~v~~~~~~~---~~~~g~ILV~~~~~p~-~~~~~~~~~giv~~~Gg-~~sH~aIvare~gIPavv~~~~- 846 (871)
T PRK06241 773 VSSGVVEGRARVILNPEDA---DLEKGDILVTAFTDPG-WTPLFVSIKGLVTEVGG-LMTHGAVIAREYGIPAVVGVEN- 846 (871)
T ss_pred cCCCeEEEEEEEECCHHHc---CCCCCeEEEecCCCHH-HHHHHHhceEEEEcCCC-cchHHHHHHHhcCCCEEEcccc-
Confidence 6899999999998776553 2345679999987773 3553 79999887665 9999999999999998764432
Q ss_pred HHHHHHhc-CCCeEEEEEcCCceEE
Q 001333 726 ILRNLRLK-EGKAVSIRLKSTNLII 749 (1097)
Q Consensus 726 ~~~~l~~l-~Gk~V~l~vs~~~~~l 749 (1097)
. .+.+ +|..|.+......+.+
T Consensus 847 ~---~~~l~~G~~v~lDg~~G~v~i 868 (871)
T PRK06241 847 A---TKLIKDGQRIRVDGTEGYVEI 868 (871)
T ss_pred H---HhhcCCCCEEEEECCCCEEEE
Confidence 2 2333 7999998877655543
No 16
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.40 E-value=0.091 Score=49.35 Aligned_cols=65 Identities=26% Similarity=0.539 Sum_probs=37.3
Q ss_pred CeEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeeeccC-CCcceeEEEEEccCCceeEEEEEEecC-CcccccC
Q 001333 98 AAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIAT-ARGSFQMVDVNLQKRKFVGIQFVIWSG-GSWIKNN 175 (1097)
Q Consensus 98 ~lvLHWGv~~~~~~eW~~PP~~~~P~gS~~~~~A~eT~f~~~~~-~~~~~~~lei~l~~~~~~gi~FVLk~~-~~W~kn~ 175 (1097)
.+.||+|.. .|..+|.. ++++... ....+-..+|+++.++. .|.||++++ ++|=+|+
T Consensus 20 ~v~~~~G~n-----~W~~~~~~---------------~m~~~~~~~~~~~~~~tv~vP~~a~-~~dfvF~dg~~~wDNN~ 78 (87)
T PF03423_consen 20 NVHLHGGFN-----RWTHVPGF---------------GMTKMCVPDEGGWWKATVDVPEDAY-VMDFVFNDGAGNWDNNN 78 (87)
T ss_dssp EEEEEETTS------B-SSS-E---------------E-EEESS---TTEEEEEEE--TTTS-EEEEEEE-SSS-EESTT
T ss_pred cEEEEecCC-----CCCcCCCC---------------CcceeeeeecCCEEEEEEEEcCCce-EEEEEEcCCCCcEeCCC
Confidence 588999975 49887541 2222111 00122345677765544 699999998 8999999
Q ss_pred CcceEEec
Q 001333 176 GENFFVGL 183 (1097)
Q Consensus 176 G~DF~V~l 183 (1097)
|.||+++.
T Consensus 79 g~nY~~~V 86 (87)
T PF03423_consen 79 GANYHFPV 86 (87)
T ss_dssp TS-EEEES
T ss_pred CccEEEEc
Confidence 99999985
No 17
>PRK05865 hypothetical protein; Provisional
Probab=93.84 E-value=0.17 Score=65.12 Aligned_cols=94 Identities=17% Similarity=0.076 Sum_probs=67.2
Q ss_pred eeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEecCCCCCCcchhhhhcccCCceeeEecchH
Q 001333 648 ISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQN 725 (1097)
Q Consensus 648 ispG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP--~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~ 725 (1097)
++||.+.|.+++|.. .+ ......+.|||+...+-.. +| ..+.||||..-. .+||.++.||..|||-+.+-..
T Consensus 741 ~s~G~v~G~vrvv~~-~~--~~~~~~g~ILVa~~tdp~~-~~~~~~a~giVte~Gg-~~SH~AIvARe~gIPaVvgv~~- 814 (854)
T PRK05865 741 VCGGRVRGRVRIVRP-ET--IDDLQPGEILVAEVTDVGY-TAAFCYAAAVVTELGG-PMSHAAVVAREFGFPCVVDAQG- 814 (854)
T ss_pred ccCCccEEEEEEecH-HH--hhhcCCCeEEEeCCCCHHH-HHHHHHheEEEeccCC-CccHHHHHHHHcCCCEEEcccc-
Confidence 588899999999972 22 1234567899998433222 33 269999998765 8999999999999999875542
Q ss_pred HHHHHHh-cCCCeEEEEEcCCceEEe
Q 001333 726 ILRNLRL-KEGKAVSIRLKSTNLIIS 750 (1097)
Q Consensus 726 ~~~~l~~-l~Gk~V~l~vs~~~~~l~ 750 (1097)
+ .+. .+|+.|.+..+...+.+-
T Consensus 815 a---t~~l~dG~~V~vDg~~G~V~~l 837 (854)
T PRK05865 815 A---TRFLPPGALVEVDGATGEIHVV 837 (854)
T ss_pred H---hhcCCCCCEEEEECCCcEEEEe
Confidence 1 222 389999998887666653
No 18
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=93.80 E-value=0.094 Score=67.12 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=68.9
Q ss_pred CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCCcchhhhhcccCCceeeEe
Q 001333 644 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATC 721 (1097)
Q Consensus 644 ~wqvispG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~ 721 (1097)
.=..++||.+.|.++++....+.. ....+.|||+...+-+. +|. .+.||||..-. ..||.++.||+.|||-+..
T Consensus 356 ~G~~~~~G~~~G~v~v~~~~~d~~--~~~~g~ILV~~~~~p~~-~~~l~~~~giVte~Gg-~tSH~AivAR~lgIPavvg 431 (782)
T TIGR01418 356 TGRAAGPGIASGKVKVIFDLKEMD--KFEEGDILVTDMTDPDW-EPAMKRASAIVTNEGG-MTCHAAIVARELGIPAVVG 431 (782)
T ss_pred cCcccCCCceEEEEEEeCCHHHHH--hcCCCeEEEECCCCHHH-HHHhHhheEEEEcCCC-CccHHHHHHHhcCCCEEEc
Confidence 445679999999999998877643 34567799998544332 442 79999998776 8999999999999998654
Q ss_pred cchHHHHHHHhcCCCeEEEEEcC
Q 001333 722 FDQNILRNLRLKEGKAVSIRLKS 744 (1097)
Q Consensus 722 ~d~~~~~~l~~l~Gk~V~l~vs~ 744 (1097)
-. +....+ .+|..|.+....
T Consensus 432 ~~-~~~~~l--~~G~~v~vDg~~ 451 (782)
T TIGR01418 432 TG-DATKTL--KDGMEVTVDCAE 451 (782)
T ss_pred cc-chhhcc--cCCCEEEEEcCC
Confidence 32 222222 369999988876
No 19
>PRK06354 pyruvate kinase; Provisional
Probab=93.66 E-value=0.082 Score=65.45 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=68.9
Q ss_pred EEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCCcchhhhhcccCCceeeEecc
Q 001333 646 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 723 (1097)
Q Consensus 646 qvispG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d 723 (1097)
+..+||.+.|.++++....+. .....+.||+++..+- +.+|. .+.||||..-. ..||.++.||.+|||-+..-.
T Consensus 486 ~~as~G~~~G~v~~~~~~~~~--~~~~~~~ILV~~~~~P-~~~~~~~~~~GiVt~~Gg-~tSH~AIvAR~lgIPaVvg~~ 561 (590)
T PRK06354 486 QGIGRKSVSGKARVAKTAAEV--AKVNEGDILVTPSTDA-DMIPAIEKAAAIITEEGG-LTSHAAVVGLRLGIPVIVGVK 561 (590)
T ss_pred cccccccccceEEEeCChHhh--ccCCCCeEEEeCCCCH-HHHHhHHhcEEEEEecCC-CcchHHHHHHhcCCCEEEecc
Confidence 456889999999998876553 3445688999986555 34553 79999998765 899999999999999977554
Q ss_pred hHHHHHHHhcCCCeEEEEEcCCc
Q 001333 724 QNILRNLRLKEGKAVSIRLKSTN 746 (1097)
Q Consensus 724 ~~~~~~l~~l~Gk~V~l~vs~~~ 746 (1097)
.. .. .-.+|..|.+......
T Consensus 562 ~~-~~--~l~~G~~v~vDg~~G~ 581 (590)
T PRK06354 562 NA-TS--LIKDGQIITVDAARGV 581 (590)
T ss_pred ch-hh--ccCCCCEEEEECCCCE
Confidence 21 22 2246998888766543
No 20
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=93.45 E-value=0.12 Score=63.17 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=65.6
Q ss_pred CCCcEEeeeeeEEEEEEE-ecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCCcchhhhhcccCCcee
Q 001333 642 LGCWQVISPVEVCGFITS-VNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCF 718 (1097)
Q Consensus 642 ~~~wqvispG~a~G~L~~-V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~ 718 (1097)
+..=..++||.+.|+++. .++..+. .....+.|||+...+-+. ++. .+.||||..-. ..||.++.||++|||-
T Consensus 350 l~~G~~as~G~a~G~V~~~~~~~~~~--~~~~~g~ILV~~~t~P~~-~~~~~~a~GIVte~Gg-~tSHaAivARelgiP~ 425 (530)
T PRK05878 350 LAKGLPACPGVVSGTAYTDVDEALDA--ADRGEPVILVRDHTRPDD-VHGMLAAQGIVTEVGG-ATSHAAVVSRELGRVA 425 (530)
T ss_pred eccCeeccCceEEEEEEECHHHHHHH--hhccCCEEEEECCCCHHH-HhhhHhheEEEEccCC-ccchHHHHHHHcCCCE
Confidence 345567899999999864 2222221 122346788887433322 442 69999998776 8999999999999999
Q ss_pred eEecchHHHHHHHhcCCCeEEEEEcCCce
Q 001333 719 ATCFDQNILRNLRLKEGKAVSIRLKSTNL 747 (1097)
Q Consensus 719 at~~d~~~~~~l~~l~Gk~V~l~vs~~~~ 747 (1097)
+..-... ...+ .+|..|.+......|
T Consensus 426 VvG~~~~-~~~~--~~G~~VtvDg~~G~V 451 (530)
T PRK05878 426 VVGCGAG-VAAA--LAGKEITVDGYEGEV 451 (530)
T ss_pred EEcccch-hhcc--CCCCEEEEECCCCEE
Confidence 8754322 2222 469999887765333
No 21
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=93.30 E-value=0.092 Score=67.24 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=63.4
Q ss_pred CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEecCCCCCCcchhhhhcccCCceeeE-
Q 001333 644 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFAT- 720 (1097)
Q Consensus 644 ~wqvispG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP--~~VaGVit~~~~~~LSHv~VRARn~gVp~at- 720 (1097)
.=..++||.++|.++++....+.. ....+.|||++..+= ++++ ..+.||||..-. ..||.++.||++|||-+.
T Consensus 358 ~G~~~~~G~~~G~v~v~~~~~~~~--~~~~g~ILV~~~~~p-~~~~~l~~~~givt~~Gg-~tSH~AilAR~lgIPavvg 433 (795)
T PRK06464 358 EGRAIGPGIGSGKVRVILDISEMD--KVQPGDVLVTDMTDP-DWEPVMKRASAIVTNRGG-RTCHAAIIARELGIPAVVG 433 (795)
T ss_pred eCcccCCCceeeEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHHHhheEEEEcCCC-CcchHHHHHHHcCCCEEEc
Confidence 345679999999999998766653 234567999884333 2233 279999998775 899999999999999754
Q ss_pred ecchHHHHHHHhcCCCeEEE
Q 001333 721 CFDQNILRNLRLKEGKAVSI 740 (1097)
Q Consensus 721 ~~d~~~~~~l~~l~Gk~V~l 740 (1097)
|.+ .... -.+|..|.+
T Consensus 434 ~~~--~~~~--l~~G~~v~v 449 (795)
T PRK06464 434 TGN--ATEV--LKDGQEVTV 449 (795)
T ss_pred cCc--ccce--ecCCCEEEE
Confidence 222 2221 236999988
No 22
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=93.18 E-value=0.13 Score=62.30 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=48.7
Q ss_pred CCCeEEEEeCCCCccccCC---------CcEEEecCCCCCCcchhhhhcccCCceeeEecchHHHHHHHhcCCCeEEEEE
Q 001333 672 RRPTIIIASRITGEEEIPV---------GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRL 742 (1097)
Q Consensus 672 ~~p~Ill~~~~~G~EEIP~---------~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~v 742 (1097)
+.|.||+++ |+.| +|.||+|..-. ..||.+++||.+|||-+.=-. +.+. .-.+|..|-+..
T Consensus 395 ~~~~ILVA~------dLtPSd~a~Ld~~~V~Givt~~GG-~TSHtAILARslgIPaVvg~~-~~~~--~~~~G~~vilDG 464 (473)
T PRK11377 395 NSPTILLAE------NIYPSTVLQLDPAVVKGICLSAGS-PLSHSAIIARELGIGWICQQG-EKLY--AIQPEETLTLDV 464 (473)
T ss_pred CCCEEEEEC------CCCHHHHHhcCHhHeEEEEECCCC-cccHHHHHHHHcCCCEEEcch-hhHh--hccCCCEEEEEC
Confidence 468899998 6665 69999998876 899999999999999754222 1222 224688888877
Q ss_pred cCCceE
Q 001333 743 KSTNLI 748 (1097)
Q Consensus 743 s~~~~~ 748 (1097)
....+.
T Consensus 465 ~~G~v~ 470 (473)
T PRK11377 465 KTQRLN 470 (473)
T ss_pred CCCEEE
Confidence 664443
No 23
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=92.83 E-value=0.13 Score=66.32 Aligned_cols=104 Identities=18% Similarity=0.163 Sum_probs=66.4
Q ss_pred CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCCcchhhhhcccCCceeeEe
Q 001333 644 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATC 721 (1097)
Q Consensus 644 ~wqvispG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~ 721 (1097)
.=...+||.++|++++...-.... .....+.|||....+-+ +++- .+.||||..-. ..||.++.||++|||-++.
T Consensus 390 ~G~~aspG~a~G~v~~~~~~a~~~-~~~~~~~ILV~~~t~P~-d~~~~~~a~Givt~~GG-~tSHaAivAR~lgiP~VvG 466 (856)
T TIGR01828 390 KGLPASPGAATGKIVFSAEDAVEL-AEKGKKVILVREETSPE-DIEGMHVAEGILTARGG-MTSHAAVVARGMGKCCVSG 466 (856)
T ss_pred cCcccCCCeEEEEEEEchHHHHHH-hhcCCCEEEEECCCCHH-HHhhhhhheEEEEccCC-CcchHHHHHHHcCCCEEEc
Confidence 444579999999997763321111 12245678888743322 2442 68999998876 8999999999999999764
Q ss_pred cchHHHH---------HHHhcCCCeEEEEEcCCceEEe
Q 001333 722 FDQNILR---------NLRLKEGKAVSIRLKSTNLIIS 750 (1097)
Q Consensus 722 ~d~~~~~---------~l~~l~Gk~V~l~vs~~~~~l~ 750 (1097)
-....++ .-.-.+|..|.+..+...+...
T Consensus 467 ~~~~~id~~~~~~~~~~~~l~~Gd~VtvDg~~G~V~~g 504 (856)
T TIGR01828 467 CEELKINEEAKTFTIGGRVFHEGDIISIDGSTGEIYLG 504 (856)
T ss_pred ccccccccccceeeeCCeEecCCCEEEEECCCCEEEEC
Confidence 3321111 1122468888887766555443
No 24
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=92.37 E-value=0.13 Score=66.42 Aligned_cols=105 Identities=18% Similarity=0.137 Sum_probs=65.7
Q ss_pred CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCCcchhhhhcccCCceeeEe
Q 001333 644 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATC 721 (1097)
Q Consensus 644 ~wqvispG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~ 721 (1097)
.=...|||.|+|++++...-..-. .....+.|||... .--++++- .+.||||..-. ..||.+|.||++|||-++.
T Consensus 396 ~G~~aspGaa~G~v~~~~~~a~~~-~~~~~~~ILV~~e-t~P~di~~m~~a~GIvT~~GG-~TSHAAIVAR~lGiP~VvG 472 (879)
T PRK09279 396 KGLPASPGAATGKIVFTADEAEAL-AARGEKVILVRPE-TSPEDIHGMHAAEGILTARGG-MTSHAAVVARGMGKPCVVG 472 (879)
T ss_pred CCcccCCCeEEEEEEEChHHHHHh-hccCCCEEEEECC-CCHHHHhhhhHeeEEEEeCCC-ccchHHHHHHHcCCCEEec
Confidence 344569999999997743221111 1224567877773 22233442 58899998776 8999999999999999664
Q ss_pred cchHHHH---------HHHhcCCCeEEEEEcCCceEEee
Q 001333 722 FDQNILR---------NLRLKEGKAVSIRLKSTNLIISD 751 (1097)
Q Consensus 722 ~d~~~~~---------~l~~l~Gk~V~l~vs~~~~~l~~ 751 (1097)
-..-.++ .-.-.+|..|.+..+...|...+
T Consensus 473 ~~~~~id~~~~~~~~~~~~l~~Gd~VtIDG~~G~V~~g~ 511 (879)
T PRK09279 473 AGALRIDEKAKTFTVGGGTLKEGDVITIDGSTGEVYLGE 511 (879)
T ss_pred cCcceEecccCEEEECCEEecCCCEEEEECCCCEEEECC
Confidence 3211110 11224688888887765555443
No 25
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=89.67 E-value=0.43 Score=59.18 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=53.5
Q ss_pred CCCeEEEEeCCCCcc--ccC-CCcEEEecCCCCCCcchhhhhcccCCceeeEecchHHHHHHHhcCCCeEEEEEcCCceE
Q 001333 672 RRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 748 (1097)
Q Consensus 672 ~~p~Ill~~~~~G~E--EIP-~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~~~ 748 (1097)
..|.|||++..+-.+ .++ .+|.||||..-. ..||.+++||++|||-+..-. +.... -.+|..|.+......+.
T Consensus 153 ~~~~ILVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~AIlAr~lgIPavvg~~-~~~~~--~~~G~~vilDg~~G~v~ 228 (575)
T PRK11177 153 QEEVILVAADLTPSETAQLNLKKVLGFITDIGG-RTSHTSIMARSLELPAIVGTG-NITKQ--VKNGDYLILDAVNNQIY 228 (575)
T ss_pred CCCeEEEecCCCHHHHhhhhhhheeEEEEcCCC-cccHHHHHHHHcCCCEEEcCh-hHHhh--ccCCCEEEEECCCCEEE
Confidence 457788888443333 111 369999998776 899999999999999765443 22222 23699999888776666
Q ss_pred Eeec
Q 001333 749 ISDI 752 (1097)
Q Consensus 749 l~~~ 752 (1097)
+.+.
T Consensus 229 ~~P~ 232 (575)
T PRK11177 229 VNPT 232 (575)
T ss_pred ECCC
Confidence 6654
No 26
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=89.10 E-value=0.55 Score=58.23 Aligned_cols=77 Identities=22% Similarity=0.182 Sum_probs=52.3
Q ss_pred CCCeEEEEeCCCCccccC---CCcEEEecCCCCCCcchhhhhcccCCceeeEecchHHHHHHHhcCCCeEEEEEcCCceE
Q 001333 672 RRPTIIIASRITGEEEIP---VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 748 (1097)
Q Consensus 672 ~~p~Ill~~~~~G~EEIP---~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~~~ 748 (1097)
..|.|||++..+=.+=+. .++.||+|..-. ..||.++.||++|||-+..-. +.... -.+|..|.+......+.
T Consensus 152 ~~~~IlVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~aIlAR~lgIP~vvg~~-~~~~~--~~~G~~v~vDg~~G~v~ 227 (565)
T TIGR01417 152 QDEVILVAEDLTPSETAQLNLKYVKGFLTDAGG-KTSHTAIMARSLEIPAIVGTK-SVTSQ--VKNGDTVIIDGVKGIVI 227 (565)
T ss_pred CCCeEEEecCCCHHHHHHhhhhheeEEEEccCC-CcchHHHHHHHcCCCEEEcch-hHHhh--CCCCCEEEEECCCCEEE
Confidence 457788887322222111 269999998765 899999999999999866443 22222 23799999988776666
Q ss_pred Eeec
Q 001333 749 ISDI 752 (1097)
Q Consensus 749 l~~~ 752 (1097)
+.+.
T Consensus 228 ~~P~ 231 (565)
T TIGR01417 228 FNPS 231 (565)
T ss_pred eCCC
Confidence 6553
No 27
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=88.87 E-value=0.5 Score=45.81 Aligned_cols=98 Identities=13% Similarity=0.194 Sum_probs=69.2
Q ss_pred cEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCCcchhhhhcccCCceeeEec
Q 001333 645 WQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCF 722 (1097)
Q Consensus 645 wqvispG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~~ 722 (1097)
=|.|-.|.+.|+.++-++-.+... .+..-.||++...|+| -+|. -..||||.+.. .-||-+|-+++.|||.+.=.
T Consensus 5 GqgIg~gsv~G~~~vA~~~~~~~~-k~~~g~iLv~~std~d-~v~~~eKa~aiItee~g-lTshaAVvgl~LgvPvIvG~ 81 (111)
T COG3848 5 GQGIGRGSVSGRAVVADSGKEAEQ-KFEEGVILVTPSTDAD-FVPALEKAAAIITEEGG-LTSHAAVVGLELGVPVIVGV 81 (111)
T ss_pred ceeecccceeeEEEEccCHhHhhC-CcccCcEEEeccCChh-hHHHHHhhheeEeccCC-ccccceeeEeecCCcEEEEe
Confidence 367788899999988877665432 1345678888865554 4775 68999999988 99999999999999997744
Q ss_pred chHHHHHHHhcCCCeEEEEEcCCceEE
Q 001333 723 DQNILRNLRLKEGKAVSIRLKSTNLII 749 (1097)
Q Consensus 723 d~~~~~~l~~l~Gk~V~l~vs~~~~~l 749 (1097)
+.. .+.+ .+|..|.+..+- ++.+
T Consensus 82 ~~a-t~~i--~dG~~vTvD~~r-G~VY 104 (111)
T COG3848 82 KKA-TQLI--RDGAIVTVDAQR-GVVY 104 (111)
T ss_pred cch-hhhc--cCCCEEEEeccc-ceEE
Confidence 422 2211 378877766542 4444
No 28
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=87.13 E-value=0.7 Score=59.14 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=51.9
Q ss_pred CCCeEEEEeCCCCccccC----CCcEEEecCCCCCCcchhhhhcccCCceeeEecchHHHHHHHhcCCCeEEEEEcCCce
Q 001333 672 RRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 747 (1097)
Q Consensus 672 ~~p~Ill~~~~~G~EEIP----~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~~ 747 (1097)
..|.||+++..+-.+ ++ .+|+||+|..-. ..||.++.||++|||.+.=-+ .... ...|..|.+......+
T Consensus 320 ~~~~Ilva~~l~ps~-~~~l~~~~i~Givt~~Gg-~tSH~aIlAr~lgIP~vvg~~--~~~~--~~~G~~vilDg~~G~v 393 (748)
T PRK11061 320 PERFILVADELTATL-LAELPQDRLAGVVVRDGA-ANSHAAILVRALGIPTVMGAD--IQPS--LLHQRLLIVDGYRGEL 393 (748)
T ss_pred CCCEEEEECCCCHHH-HHhhhhhheEEEEECCCC-CccHHHHHHHHcCCCEEEcCc--chhh--ccCCCEEEEECCCCEE
Confidence 457788887322221 11 169999998876 889999999999999754222 1222 2359999988877667
Q ss_pred EEeecC
Q 001333 748 IISDIS 753 (1097)
Q Consensus 748 ~l~~~~ 753 (1097)
.+.+..
T Consensus 394 ~vnP~~ 399 (748)
T PRK11061 394 LVDPEP 399 (748)
T ss_pred EeCCCH
Confidence 676543
No 29
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=85.83 E-value=1.1 Score=54.87 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=56.2
Q ss_pred CCCeEEEEeCCCCccccCC---------CcEEEecCCCCCCcchhhhhcccCCceeeEecchHHHHHHHhcCCCeEEEEE
Q 001333 672 RRPTIIIASRITGEEEIPV---------GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRL 742 (1097)
Q Consensus 672 ~~p~Ill~~~~~G~EEIP~---------~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~v 742 (1097)
++|.||+++ |+.| .|.|++|..-+ ..||.++.||..+||-+.-.... ...+ .+|+.|-+..
T Consensus 154 ~~~~IlvA~------dLtPSdta~l~~~~v~Gfvt~~GG-~TSHtAImARsl~IPavVg~~~~-~~~v--~~g~~viiDg 223 (574)
T COG1080 154 DEEVILVAE------DLTPSDTAQLDKKYVKGFVTDIGG-RTSHTAILARSLGIPAVVGLGAA-TLAV--KDGDTLILDG 223 (574)
T ss_pred CCCeEEEEC------CCCHHHHhhcCHhhceeeEecCCC-cccHHHHHHHhcCCCeeecCcHH-hhcc--cCCCEEEEEC
Confidence 568899997 7775 59999998766 88999999999999997755533 2323 3899999988
Q ss_pred cCCceEEeecC
Q 001333 743 KSTNLIISDIS 753 (1097)
Q Consensus 743 s~~~~~l~~~~ 753 (1097)
..+.+.+.+..
T Consensus 224 ~~G~vi~nP~~ 234 (574)
T COG1080 224 INGEVIVNPDE 234 (574)
T ss_pred CCCeEEECcCH
Confidence 88777776643
No 30
>PLN02316 synthase/transferase
Probab=83.05 E-value=5.6 Score=52.56 Aligned_cols=85 Identities=12% Similarity=0.239 Sum_probs=53.9
Q ss_pred cCCceEEEE---EEcc--CCCeEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeeeccCCCcceeEEEEEccCCc
Q 001333 83 ISSDYHILV---AVNM--KGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRK 157 (1097)
Q Consensus 83 ~~~~~~V~v---~td~--~~~lvLHWGv~~~~~~eW~~PP~~~~P~gS~~~~~A~eT~f~~~~~~~~~~~~lei~l~~~~ 157 (1097)
.|..++|.. .+.+ ..++.+|||... |.-.+.. .++ +.++....+.+-..++.++.+
T Consensus 327 aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~-----W~~~~~~------------~~~-~~~~~~~~g~ww~a~v~vP~~- 387 (1036)
T PLN02316 327 AGDTVKLYYNRSSGPLAHSTEIWIHGGYNN-----WIDGLSI------------VEK-LVKSEEKDGDWWYAEVVVPER- 387 (1036)
T ss_pred CCCEEEEEECCCCCCCCCCCcEEEEEeEcC-----CCCCCcc------------cce-eecccCCCCCEEEEEEecCCC-
Confidence 344555555 2333 447999999998 8765431 121 223232222233456666655
Q ss_pred eeEEEEEEecC-----CcccccCCcceEEecCCC
Q 001333 158 FVGIQFVIWSG-----GSWIKNNGENFFVGLHPM 186 (1097)
Q Consensus 158 ~~gi~FVLk~~-----~~W~kn~G~DF~V~l~~~ 186 (1097)
-.-|.||+-++ +.|=+|+|.||+++.+..
T Consensus 388 A~~mDfVFsdg~~~~~~~yDNn~~~Dyh~~v~~~ 421 (1036)
T PLN02316 388 ALVLDWVFADGPPGNARNYDNNGRQDFHAIVPNN 421 (1036)
T ss_pred ceEEEEEEecCCcccccccccCCCcceeeecCCC
Confidence 44599999997 589999999999999865
No 31
>PLN02316 synthase/transferase
Probab=82.81 E-value=4.2 Score=53.72 Aligned_cols=95 Identities=12% Similarity=0.278 Sum_probs=60.9
Q ss_pred ecceEEEEEEE--ecCCceEEEEEEcc-----CCCeEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeeeccCCC
Q 001333 71 HMDHEIVVLSK--IISSDYHILVAVNM-----KGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATAR 143 (1097)
Q Consensus 71 ~l~~el~V~v~--~~~~~~~V~v~td~-----~~~lvLHWGv~~~~~~eW~~PP~~~~P~gS~~~~~A~eT~f~~~~~~~ 143 (1097)
..+..+.|... +.|+.++|.+-.+. ..++.+|=|... |...+ ..+++.++..++
T Consensus 138 ~~~~~~f~~P~~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gfN~-----W~~~~--------------f~~~~~k~~~~g 198 (1036)
T PLN02316 138 SRGNKLFVYPQVVKPDSDIEVYLNRSLSTLANEPDVLIMGAFNG-----WRWKS--------------FTERLEKTELGG 198 (1036)
T ss_pred CCCCeEEeccccccCCCeeEEEEcCCCCccCCCCceEEEecccc-----ccccc--------------cceeccccccCC
Confidence 33345555554 36667777772222 346888866654 76633 234555555433
Q ss_pred cceeEEEEEccCCceeEEEEEEecC-CcccccCCcceEEecCCC
Q 001333 144 GSFQMVDVNLQKRKFVGIQFVIWSG-GSWIKNNGENFFVGLHPM 186 (1097)
Q Consensus 144 ~~~~~lei~l~~~~~~gi~FVLk~~-~~W~kn~G~DF~V~l~~~ 186 (1097)
.++. -+++|++.++. |.||+.++ +.|=+|+|.||+++....
T Consensus 199 ~ww~-~~v~Vp~~A~~-ldfVf~~g~~~yDNN~~~Df~~~V~~~ 240 (1036)
T PLN02316 199 DWWS-CKLHIPKEAYK-MDFVFFNGQNVYDNNDHKDFCVEIEGG 240 (1036)
T ss_pred CeEE-EEEecCccceE-EEEEEeCCccccccCCCCceEEEeCCC
Confidence 3333 35667666655 99999998 679999999999998754
No 32
>PRK03955 hypothetical protein; Reviewed
Probab=81.70 E-value=4.2 Score=41.38 Aligned_cols=95 Identities=13% Similarity=0.197 Sum_probs=63.9
Q ss_pred EEeeeeeEEEEEEEecc-ccc---ccccc-----cC--------CCeEEEEeCCCCcc--------ccCCC--cEEEecC
Q 001333 646 QVISPVEVCGFITSVNE-LIT---LQNKV-----YR--------RPTIIIASRITGEE--------EIPVG--VVAVLTP 698 (1097)
Q Consensus 646 qvispG~a~G~L~~V~~-l~~---~~~~~-----~~--------~p~Ill~~~~~G~E--------EIP~~--VaGVit~ 698 (1097)
..+++|.+.|++.+.++ +.- +.+.+ .. .-.||++....|-- -+-.| =+|+|..
T Consensus 6 ~~~~~G~~~Ge~lv~~~~lSf~ggvd~~tG~iid~~h~l~G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~ 85 (131)
T PRK03955 6 RIISKGKAEGEVIVSKKPISFLGGVDPETGIVIDKEHDLYGESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINL 85 (131)
T ss_pred EEEeccEEEEEEEEeCCCccccccccCCCCEEEecCCCcCCCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEe
Confidence 46899999999888764 221 11111 01 23589988777762 11122 3688998
Q ss_pred CCCCCcchhhhhcccCCceeeEecchHHHHHHHhcCCCeEEEEEcCCceE
Q 001333 699 DMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 748 (1097)
Q Consensus 699 ~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~~~ 748 (1097)
+.-+.|||-++-| +||.+...+ .+.|+ +|.+|++..+...+.
T Consensus 86 ~~~~ils~GaIvA---gIP~V~~~~---~~~l~--~G~~V~Vdg~~G~V~ 127 (131)
T PRK03955 86 EAEPIVATGAIIS---GIPLVDKVD---ISKLK--DGDRVVVDGDEGEVE 127 (131)
T ss_pred cCCceeEeeeeec---CCceEcccc---ceecC--CCCEEEEeCCCCEEE
Confidence 8888999999999 999998666 33332 899999875554444
No 33
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=64.27 E-value=4.5 Score=49.77 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=51.8
Q ss_pred ccccCCCeEEEEeCCCCcc--ccC-CCcEEEecCCCCCCcchhhhhcccCCceeeEe-cchHHHHHHHhcCCCeEEEEEc
Q 001333 668 NKVYRRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATC-FDQNILRNLRLKEGKAVSIRLK 743 (1097)
Q Consensus 668 ~~~~~~p~Ill~~~~~G~E--EIP-~~VaGVit~~~~~~LSHv~VRARn~gVp~at~-~d~~~~~~l~~l~Gk~V~l~vs 743 (1097)
...+.++.|+|++..+-.| |.| ...+||++.+-. .-||+++.||.+|||.+-= -|- ..+..+|..+-+.--
T Consensus 323 ~~~~pe~aIlVarel~aa~L~e~Pr~rL~GvVl~dGa-anSH~aIvaRAmGIP~V~~a~~i----~~~~~n~~~~IVDG~ 397 (756)
T COG3605 323 ANAWPEDAILVARELGAAELLEYPRDRLRGVVLEDGA-ANSHAAIVARAMGIPTVMGAAGI----VPSVLNGDALIVDGY 397 (756)
T ss_pred hhcCCcceEEEecccCHHHHhhCchhhheeeeeecCc-ccchHHHHHHhcCCceeccccCc----chhhhcCCcEEEECC
Confidence 3456778899998544433 344 269999987754 7899999999999999763 221 123356666555444
Q ss_pred CCceEEee
Q 001333 744 STNLIISD 751 (1097)
Q Consensus 744 ~~~~~l~~ 751 (1097)
...+.+++
T Consensus 398 ~gev~l~P 405 (756)
T COG3605 398 RGEVHLRP 405 (756)
T ss_pred cceEEeCC
Confidence 44444544
No 34
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=63.39 E-value=3.6 Score=52.74 Aligned_cols=108 Identities=20% Similarity=0.199 Sum_probs=70.6
Q ss_pred chhhccccHHHHhhhhhHHHHHHHhhhhHHHHHHhcCCCcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCc
Q 001333 606 KYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGE 685 (1097)
Q Consensus 606 ~~~v~~FtEe~IR~~~~f~lS~l~~~l~p~lr~~a~~~~wqvispG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~ 685 (1097)
+|.++- .+.++|+.+.-..+.+-...++ ...-..++. .+||.+.|.++++....+. ......+||+....+.|
T Consensus 305 Ew~id~-~~~ilq~rP~t~~~~~~~~~~~---~~~~~~g~g-a~~g~~~G~v~~~~d~~e~--~~~~~g~iLv~~~t~pd 377 (740)
T COG0574 305 EWAIDG-KLYILQARPETVLSLLHPVEDR---GRALLKGIG-ASPGIASGRVKIILDVSEM--EKLEHGDILVTPMTDPD 377 (740)
T ss_pred hhhhcC-ceEEEEecCccccccccccccc---ccceeeeee-ccCCceeEEEEEEecHHHh--cccccCceEEeecCCHH
Confidence 455554 6667788877777766655555 111122333 8999999999888776654 22235678888744333
Q ss_pred cccCC--CcEEEecCCCCCCcchhhhhcccCCceeeEec
Q 001333 686 EEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCF 722 (1097)
Q Consensus 686 EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~~ 722 (1097)
.+|. .-.||+|.+-. ..||-+|.||.+|+|-+.=-
T Consensus 378 -~~~~m~~a~~Ivt~~Gg-~tshaaivaRe~g~Pavvg~ 414 (740)
T COG0574 378 -WVPLMKVAGAIVTDRGG-MTSHAAIVARELGIPAVVGT 414 (740)
T ss_pred -HhhhhhhccceEEcCCC-ccccchhhhhhcCCCeEEcC
Confidence 3442 34567765554 99999999999999996533
No 35
>PF07067 DUF1340: Protein of unknown function (DUF1340); InterPro: IPR009774 This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 235 residues in length. The function of this family is unknown.
Probab=43.58 E-value=73 Score=34.37 Aligned_cols=62 Identities=18% Similarity=0.345 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcccccCCCChhhHHHHHHHHHhhccccCCCchhHHHHHHHHHhhhhhccCCchHHHHHHHHHHHHHH
Q 001333 499 SLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQ 577 (1097)
Q Consensus 499 ale~~~r~~~e~~~~~~~~~~~~~~~~~~~~~l~n~~ls~~~n~~l~~~l~~w~~~~~~~~~~~~~wAL~~kA~ldR~r 577 (1097)
--.+.+||+|...|-+++.+.|-.+..+=.|+ .+||.--+... -....+|.-++.+-+||.-
T Consensus 147 q~An~i~taiNt~YtE~giltPrKvIQlEGLL----------SRELfgkiaky-------VfNkYEWpesLD~EVdRI~ 208 (236)
T PF07067_consen 147 QQANTIRTAINTCYTEIGILTPRKVIQLEGLL----------SRELFGKIAKY-------VFNKYEWPESLDSEVDRIY 208 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH----------HHHHHHHHHHH-------HhccccCchhhHhhhhhhe
Confidence 34577999999999999999998877766665 34543222111 1234678889999998873
No 36
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=37.25 E-value=56 Score=35.72 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=38.0
Q ss_pred CCcCCcccchHHHHHHHHHHHHHHHhcC--CCeeEEEEEE--CCeEEEEeeccC
Q 001333 1047 PMVGDKSFQTSVFSKIAETGKIIESLYG--YPQDIEGVLK--DGLIYVVQARPQ 1096 (1097)
Q Consensus 1047 plLtD~~~r~~ll~~La~lg~~IE~~fG--~PQDIEWai~--~g~LyILQaRPq 1096 (1097)
+.|+++. .++|.+.+.+|-+.+| .+--|||+++ ++++|++...|-
T Consensus 131 ~~L~~~~-----~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR 179 (211)
T PF02786_consen 131 QTLSDEE-----RQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPR 179 (211)
T ss_dssp SSS-HHH-----HHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS
T ss_pred cccchHH-----HHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCC
Confidence 4567665 7899999999999887 5999999999 799999998873
No 37
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=36.20 E-value=42 Score=37.44 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=22.2
Q ss_pred ChhhHHHHHhhC-CCChhhhhcCCCCc
Q 001333 364 KIDAYWQTLNCH-GLSKQKLASYDRPI 389 (1097)
Q Consensus 364 ~~~~yw~~l~~~-g~t~e~l~s~dr~i 389 (1097)
|.-++|..+-+. |+|+|++.|++ |.
T Consensus 92 ~hidlwlr~aeAlGvs~eei~s~e-pl 117 (242)
T COG5424 92 NHIDLWLRLAEALGVSREEILSHE-PL 117 (242)
T ss_pred cHHHHHHHHHHHcCCCHHHHhhcC-CC
Confidence 667899999996 99999999998 54
No 38
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.50 E-value=1.2e+02 Score=34.19 Aligned_cols=87 Identities=20% Similarity=0.421 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHccCCCcHHHHHHHHhhccCCCCCCCch-hhHHHHHHHHhcCC---------CCcc---------hHHHH
Q 001333 276 DRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQ-RIRDEILVIQRNNG---------CKTG---------MMEEW 336 (1097)
Q Consensus 276 ~~~t~~~~~~~~~~~~~r~~~r~~l~~~~rgg~g~~gq-~ird~il~i~~~n~---------~k~~---------~~e~W 336 (1097)
+|+++.+...-.+.|+...+++.++.=- +.|+.-.|+ ++..-|=.+.-+.+ +.|+ ++++|
T Consensus 53 ~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~ 131 (260)
T PF04190_consen 53 ARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEW 131 (260)
T ss_dssp HHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 6888888888888999999999888877 777777887 55544433332211 1222 67788
Q ss_pred HhhhcCCCCCchHHHHHHHHHHHHcCCChh
Q 001333 337 HQKLHNNTSPDDIIICEALLNYIRCGFKID 366 (1097)
Q Consensus 337 HQkLhnnttpddv~icea~l~~l~~~~~~~ 366 (1097)
-++ ...+-.|..|++|.|.||-.+ |+.
T Consensus 132 ~~~--~~~~e~dlfi~RaVL~yL~l~-n~~ 158 (260)
T PF04190_consen 132 STK--GYPSEADLFIARAVLQYLCLG-NLR 158 (260)
T ss_dssp HHH--TSS--HHHHHHHHHHHHHHTT-BHH
T ss_pred HHh--cCCcchhHHHHHHHHHHHHhc-CHH
Confidence 776 566667999999999999988 654
No 39
>KOG3021 consensus Predicted kinase [General function prediction only]
Probab=27.42 E-value=48 Score=37.00 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHccCCCcHHHHHHHHhhccCCCCCCCchhh
Q 001333 271 ISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRI 315 (1097)
Q Consensus 271 ~~~~q~~~t~~~~~~~~~~~~~r~~~r~~l~~~~rgg~g~~gq~i 315 (1097)
+++-|..|...||+.+..+-..++..|---.||||||+ .|.+|
T Consensus 95 lr~~~a~lG~qlAdmHl~n~kl~e~r~~~~~tv~rgge--~~e~~ 137 (313)
T KOG3021|consen 95 LRSDAAKLGSQLADMHLKNEKLAEARRTEAGTVGRGGE--EGEQI 137 (313)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHhccccccCcc--ccccc
Confidence 45567889999999999999999988888999999998 56554
No 40
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=22.64 E-value=72 Score=26.47 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=17.4
Q ss_pred CCCCchHHHHHHHHHHHHcC
Q 001333 343 NTSPDDIIICEALLNYIRCG 362 (1097)
Q Consensus 343 nttpddv~icea~l~~l~~~ 362 (1097)
.-|+||-.||.|+.+|-.+-
T Consensus 14 GdteddT~v~r~l~~yY~~k 33 (41)
T PF14475_consen 14 GDTEDDTHVHRVLRKYYTEK 33 (41)
T ss_pred CCCcchhHHHHHHHHHHHHc
Confidence 46899999999999997765
Done!