BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001334
(1097 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 275 bits (704), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 162/337 (48%), Positives = 210/337 (62%), Gaps = 13/337 (3%)
Query: 366 KGTIRVYCRVRPFLPGQSNG---QSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAP 422
KG IRV RVRP G + V + ++ +I+ + +GK F +KVF+P
Sbjct: 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSII--HLLHKGKPVS--FELDKVFSP 58
Query: 423 NVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRD 482
SQ+ ++ + Q LV S +DGFNVCIFAYGQTG+GKTYTM G TAE G+N RAL+
Sbjct: 59 QASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEG---TAENP-GINQRALQL 114
Query: 483 LFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANG-LNVPDASL 541
LF + +Y + V EIYNE +RDLL + +L+IR +G L VP +
Sbjct: 115 LFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKE-PQEKLEIRLCPDGSGQLYVPGLTE 173
Query: 542 IPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLV 601
V S +D+ ++ G NR T LNE SSRSH++L V V G + TG G L+LV
Sbjct: 174 FQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLV 233
Query: 602 DLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSL 661
DLAGSERV KS A G RL+EAQHIN+SLSALGDVI+AL + H+P+RNSKLT +LQDSL
Sbjct: 234 DLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSL 293
Query: 662 GGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIEL 698
G +KTLM V ++P ET+ +LKFAERV S+EL
Sbjct: 294 SGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 275 bits (702), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 151/344 (43%), Positives = 219/344 (63%), Gaps = 19/344 (5%)
Query: 359 YNQVQDLKGTIRVYCRVRPFLPGQSNGQ-----STVDYIGENGNIMVTNPFKQGKDARKM 413
YN ++D+KG IRVYCR+RP +S+ + +TVD V +P+K D RK
Sbjct: 5 YNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVD------EFTVEHPWKD--DKRKQ 56
Query: 414 FLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETW 473
++++VF SQ+ I+ DT+ LV+S +DG+NVCIFAYGQTGSGKT+T+ G E
Sbjct: 57 HIYDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGH----ESNP 112
Query: 474 GVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANG 533
G+ RA ++LF I + + M+E+Y + + DLL+ S RRL + + G
Sbjct: 113 GLTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPK-SARRLKLEIKKDSKG 171
Query: 534 L-NVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGS 592
+ V + + IP+++ E++ ++ G + R V T +NE SSRSH +L+V + +L T S
Sbjct: 172 MVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQS 231
Query: 593 ILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSK 652
+G L VDLAGSERV KS + G +LKEAQ IN+SLSALGDVI AL+ + HIPYRN K
Sbjct: 232 AARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHK 291
Query: 653 LTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
LT ++ DSLGG+AKTLMFV+++P + + ET ++L +A RV +I
Sbjct: 292 LTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTI 335
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 271 bits (692), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/381 (40%), Positives = 241/381 (63%), Gaps = 22/381 (5%)
Query: 363 QDLKGTIRVYCRVRPF-----LPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFN 417
+D+KG IRVYCR+RP + + N +VD V + +K D K +++
Sbjct: 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVD------EFTVEHLWKD--DKAKQHMYD 52
Query: 418 KVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNY 477
+VF N +Q+ ++ DT+ LV+S +DG+NVCIFAYGQTGSGKT+T+ G D G+
Sbjct: 53 RVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP----GLTP 108
Query: 478 RALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNR-RLDIRNTAQANGLNV 536
RA+ +LF+I + + + M+E+Y + + DLL+ + R +LDI+ ++ ++V
Sbjct: 109 RAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGM-VSV 167
Query: 537 PDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKG 596
+ +++ +++ E++ +++ G + R T +NE+SSRSH +++V + L T +I +G
Sbjct: 168 ENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARG 227
Query: 597 CLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQV 656
L VDLAGSERV KS + G +LKEAQ IN+SLSALGDVISAL+ + HIPYRN KLT +
Sbjct: 228 KLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTML 287
Query: 657 LQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKESGEIRELREE 716
+ DSLGG+AKTLMFV+I+P + + ET ++L +A RV SI + N S E+ L++
Sbjct: 288 MSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSI-VNDPSKNVSSKEVARLKKL 346
Query: 717 ISNLKQTLEKK--EAELEQLR 735
+S K+ +K + ELE+++
Sbjct: 347 VSYWKEQAGRKGDDEELEEIQ 367
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 254 bits (650), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 153/351 (43%), Positives = 216/351 (61%), Gaps = 22/351 (6%)
Query: 365 LKGTIRVYCRVRPFLPGQSNGQSTV---DYIGENGNIMVTNPFKQGKDARKMFLFNKVFA 421
L+G IRVYCRVRP L + S + + G +T +G+ F F+ +F
Sbjct: 3 LRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFE 62
Query: 422 PNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALR 481
P+ + ++I+ + + LV+S LDG+NVCIFAYGQTGSGKTYTM L A + G+ L
Sbjct: 63 PSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTM----LNAGD--GMIPMTLS 116
Query: 482 DLFQ-ISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSN---------RRLDIRNTAQA 531
+F+ +N + YE+ + IEIYNE + DLL S+ ++ DIR+ +
Sbjct: 117 HIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEK 176
Query: 532 NGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTG 591
G + + + + +TST V +++ K R+ AT NERSSRSHSV VH+ GR L TG
Sbjct: 177 QGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTG 236
Query: 592 SILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSA---HIPY 648
+G L+LVDLAGSER++ S GERL+E Q+IN+SLS LGDVI AL A +IP+
Sbjct: 237 ETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPF 296
Query: 649 RNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELG 699
RNSKLT +LQ SL G +KTLMFV+I P+ N I ET+++L+FA +V+S ++
Sbjct: 297 RNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 254 bits (648), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/355 (43%), Positives = 207/355 (58%), Gaps = 27/355 (7%)
Query: 365 LKGTIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQ--------------GKDA 410
LKG IRV+CRVRP LPG+ + + +G ++P + G A
Sbjct: 20 LKGNIRVFCRVRPVLPGEPTPPPGL-LLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPA 78
Query: 411 ---RKMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDL 467
R F F++VF P Q++++ + LV+S LDG+ VCIFAYGQTGSGKT+TM G
Sbjct: 79 PPPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPG 138
Query: 468 TAEETWGVNYRALRDLFQISN-TRGDMIKYEVGVQMIEIYNEQVRDLLVSD---GSNRRL 523
+ G+ RALR LF ++ G Y +EIYNE VRDLL + G
Sbjct: 139 GDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGEC 198
Query: 524 DIRNTAQANG-LNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVH 582
+IR + L V +A +PV+ ++V L+ + ++NRAV TA NERSSRSHSV +
Sbjct: 199 EIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQ 258
Query: 583 VLGRELVTGSILKGCLHLVDLAGSERVDKSEAVG----ERLKEAQHINRSLSALGDVISA 638
+ G G L LVDLAGSER+D A+G ERL+E Q IN SLS LG VI A
Sbjct: 259 ISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMA 318
Query: 639 LAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERV 693
L+ K +H+PYRNSKLT +LQ+SLGG AK LMFV+I+P + E++++L+FA +V
Sbjct: 319 LSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKV 373
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 253 bits (646), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 218/360 (60%), Gaps = 25/360 (6%)
Query: 356 RVLYNQVQDLKGTIRVYCRVRPFLPGQSNGQST---VDYIGENGNIMVTNPFKQGKDAR- 411
R L+N++Q+L+G IRVYCR+RP L N ++ V+ +N + K A+
Sbjct: 3 RTLHNELQELRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV 62
Query: 412 KMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEE 471
F F+K+F + ++ + LV+S LDG+NVCIFAYGQTGSGKT+TM P
Sbjct: 63 HEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD---- 118
Query: 472 TWGVNYRALRDLFQISN---TRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNR------- 521
G+ + +F N T+G Y+V + IEIYNE + DLL SD +N+
Sbjct: 119 --GIIPSTISHIFNWINKLKTKG--WDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGL 174
Query: 522 RLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTV 581
+ +IR+ + + + + + S E V +++ K R+ +TA NE SSRSHS+ +
Sbjct: 175 KHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFII 234
Query: 582 HVLGRELVTGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQ 641
H+ G TG+ G L+LVDLAGSER++ S+ VG+RL+E Q+IN+SLS LGDVI AL Q
Sbjct: 235 HLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQ 294
Query: 642 KSA---HIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIEL 698
+ HIP+RNSKLT +LQ SL G +KTLMFV+I+P + I ET+++L+FA +V+S L
Sbjct: 295 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 354
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 252 bits (644), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 159/400 (39%), Positives = 238/400 (59%), Gaps = 29/400 (7%)
Query: 320 VKEIQSNWEEELYRLEHYIKNLEVASSSYQKVL--EEN--RVLYNQVQDLKGTIRVYCRV 375
+KE + +E++ L+ IK+ E+ ++L EE R L+N++Q+L+G IRVY R+
Sbjct: 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRI 67
Query: 376 RPFLPGQSNGQST---VDYIGENGNIMVTNPFKQGKDAR-KMFLFNKVFAPNVSQEQIYV 431
RP L N ++ V+ +N + K A+ F F+K+F + ++
Sbjct: 68 RPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFK 127
Query: 432 DTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISN--- 488
+ LV+S LDG+NV IFAYGQTGSGKT+TM P G+ + +F N
Sbjct: 128 EVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPG------DGIIPSTISHIFNWINKLK 181
Query: 489 TRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNR-------RLDIRNTAQANGLNVPDASL 541
T+G Y+V + IEIYNE + DLL SD +N+ + +IR+ + + + +
Sbjct: 182 TKG--WDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 239
Query: 542 IPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLV 601
+ + S E V +++ K R+ +TA NE SSRSHS+ +H+ G TG+ G L+LV
Sbjct: 240 VKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLV 299
Query: 602 DLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSA---HIPYRNSKLTQVLQ 658
DLAGSER++ S+ VG+RL+E Q+IN+SLSALGDVI AL Q + HIP+RNSKLT +LQ
Sbjct: 300 DLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 359
Query: 659 DSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIEL 698
SL G +KTLMFV+I+P + I ET+++L+FA +V+S L
Sbjct: 360 YSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 399
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 250 bits (639), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 154/391 (39%), Positives = 221/391 (56%), Gaps = 14/391 (3%)
Query: 319 EVKEIQSNWEEELYRLEHYIKNLEVASSSYQKVLEENRVLYNQVQDLKGTIRVYCRVRPF 378
EV ++ EE L E LE + E + L+N V DL+G IRV+CR+RP
Sbjct: 5 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPP 64
Query: 379 LPGQSNGQSTVDYIGENGNIMVTNPFKQGKD--ARKMFLFNKVFAPNVSQEQIYVDTQPL 436
L + N + + + + Q K +++F F++VF P SQ I+ PL
Sbjct: 65 LESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPL 124
Query: 437 VRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQ-ISNTRGDMIK 495
++S LDG+N+CIFAYGQTGSGKTYTM G E+ GV R + LF I R +
Sbjct: 125 IQSALDGYNICIFAYGQTGSGKTYTMDG----VPESVGVIPRTVDLLFDSIRGYRNLGWE 180
Query: 496 YEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQ-ANGLNVPDASLIPVTSTEDVIELM 554
YE+ +EIYNE + DLL ++ + ++IR N + V + + V + LM
Sbjct: 181 YEIKATFLEIYNEVLYDLLSNE--QKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLM 238
Query: 555 RIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKSEA 614
+ NRA +TA NERSSRSH+V + ++GR I G ++LVDLAGSE S
Sbjct: 239 HTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPK 294
Query: 615 VGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHIN 674
R+ E ++INRSLS L +VI AL QK HIPYRNSKLT +L SLGG++KTLMF++++
Sbjct: 295 TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVS 354
Query: 675 PEHNAIGETISTLKFAERVSSIELGAARSNK 705
P + E++ +L+FA V+S ++ A+ N+
Sbjct: 355 PFQDCFQESVKSLRFAASVNSCKMTKAKRNR 385
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 250 bits (638), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 153/382 (40%), Positives = 218/382 (57%), Gaps = 15/382 (3%)
Query: 329 EELYRL-EHYIKNLEVASSSYQKVLEENRVLYNQVQDLKGTIRVYCRVRPFLPGQSNGQS 387
EEL R E LE + E + L+N V DL+G IRV+CR+RP L + N
Sbjct: 28 EELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMC 87
Query: 388 TVDYIGENGNIMVTNPFKQGKD--ARKMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFN 445
+ + + + Q K +++F F++VF P SQ I+ PL++S LDG+N
Sbjct: 88 CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYN 147
Query: 446 VCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQ-ISNTRGDMIKYEVGVQMIE 504
+CIFAYGQTGSGKTYTM G E+ GV R + LF I R +YE+ +E
Sbjct: 148 ICIFAYGQTGSGKTYTMDG----VPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLE 203
Query: 505 IYNEQVRDLLVSDGSNRRLDIRNTAQ-ANGLNVPDASLIPVTSTEDVIELMRIGQKNRAV 563
IYNE + DLL ++ + ++IR N + V + + V + LM + NRA
Sbjct: 204 IYNEVLYDLLSNE--QKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRAT 261
Query: 564 GATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQ 623
+TA NERSSRSH+V + ++GR I G ++LVDLAGSE S R+ E +
Sbjct: 262 ASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETK 317
Query: 624 HINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGET 683
+INRSLS L +VI AL QK HIPYRNSKLT +L SLGG++KTLMF++++P + E+
Sbjct: 318 NINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQES 377
Query: 684 ISTLKFAERVSSIELGAARSNK 705
+ +L+FA V+S ++ A+ N+
Sbjct: 378 VKSLRFAASVNSCKMTKAKRNR 399
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 248 bits (632), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 153/391 (39%), Positives = 220/391 (56%), Gaps = 14/391 (3%)
Query: 319 EVKEIQSNWEEELYRLEHYIKNLEVASSSYQKVLEENRVLYNQVQDLKGTIRVYCRVRPF 378
EV ++ EE L E LE + E + L+N V DL+G IRV+CR+RP
Sbjct: 8 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPP 67
Query: 379 LPGQSNGQSTVDYIGENGNIMVTNPFKQGKD--ARKMFLFNKVFAPNVSQEQIYVDTQPL 436
L + N + + + + Q K +++F F++VF P SQ I+ PL
Sbjct: 68 LESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPL 127
Query: 437 VRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQ-ISNTRGDMIK 495
++S LDG+N+CIFAYGQTGSGKTYTM G E+ GV R + LF I R +
Sbjct: 128 IQSALDGYNICIFAYGQTGSGKTYTMDG----VPESVGVIPRTVDLLFDSIRGYRNLGWE 183
Query: 496 YEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQ-ANGLNVPDASLIPVTSTEDVIELM 554
YE+ +EIYNE + DLL ++ + ++IR N + V + + V + LM
Sbjct: 184 YEIKATFLEIYNEVLYDLLSNE--QKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLM 241
Query: 555 RIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKSEA 614
+ NRA +TA NERSSRSH+V + ++GR I G ++LVDLAGSE S
Sbjct: 242 HTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPK 297
Query: 615 VGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHIN 674
R+ E ++I RSLS L +VI AL QK HIPYRNSKLT +L SLGG++KTLMF++++
Sbjct: 298 TSTRMTETKNIKRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVS 357
Query: 675 PEHNAIGETISTLKFAERVSSIELGAARSNK 705
P + E++ +L+FA V+S ++ A+ N+
Sbjct: 358 PFQDCFQESVKSLRFAASVNSCKMTKAKRNR 388
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 247 bits (631), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 153/391 (39%), Positives = 220/391 (56%), Gaps = 14/391 (3%)
Query: 319 EVKEIQSNWEEELYRLEHYIKNLEVASSSYQKVLEENRVLYNQVQDLKGTIRVYCRVRPF 378
EV ++ EE L E LE + E + L+N V DL+ IRV+CR+RP
Sbjct: 11 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPP 70
Query: 379 LPGQSNGQSTVDYIGENGNIMVTNPFKQGKD--ARKMFLFNKVFAPNVSQEQIYVDTQPL 436
L + N + + + + Q K +++F F++VF P SQ I+ PL
Sbjct: 71 LESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPL 130
Query: 437 VRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQ-ISNTRGDMIK 495
++S LDG+N+CIFAYGQTGSGKTYTM G E+ GV R + LF I R +
Sbjct: 131 IQSALDGYNICIFAYGQTGSGKTYTMDG----VPESVGVIPRTVDLLFDSIRGYRNLGWE 186
Query: 496 YEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQ-ANGLNVPDASLIPVTSTEDVIELM 554
YE+ +EIYNE + DLL ++ + ++IR N + V + + V + LM
Sbjct: 187 YEIKATFLEIYNEVLYDLLSNE--QKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLM 244
Query: 555 RIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKSEA 614
+ NRA +TA NERSSRSH+V + ++GR I G ++LVDLAGSE S
Sbjct: 245 HTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPK 300
Query: 615 VGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHIN 674
R+ E ++INRSLS L +VI AL QK HIPYRNSKLT +L SLGG++KTLMF++++
Sbjct: 301 TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVS 360
Query: 675 PEHNAIGETISTLKFAERVSSIELGAARSNK 705
P + E++ +L+FA V+S ++ A+ N+
Sbjct: 361 PFQDCFQESVKSLRFAASVNSCKMTKAKRNR 391
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 247 bits (631), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/359 (40%), Positives = 217/359 (60%), Gaps = 24/359 (6%)
Query: 356 RVLYNQVQDLKGTIRVYCRVRPFLPGQSNGQSTVD---YIGENGNIMVTNPFKQGKDARK 412
R L+N++Q+L+G IRVYCR+RP LP + + + + +NG+ +T +G
Sbjct: 17 RALHNELQELRGNIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMT--INRGNSQVI 74
Query: 413 MFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEET 472
F F+K+F + ++I+ + L++S LDG+NVCIFAYGQTGSGKTYTM P
Sbjct: 75 PFKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD----- 129
Query: 473 WGVNYRALRDLFQ-ISNTRGDMIKYEVGVQMIEIYNEQVRDLLVS-----DGSNRRLD-- 524
G+ + +F I Y+V + IEIYNE + DLL S + ++R D
Sbjct: 130 -GIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSK 188
Query: 525 --IRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVH 582
IR+ + + + + + S + V ++++ K R+ +TA NE SSRSHS+ +H
Sbjct: 189 HEIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIH 248
Query: 583 VLGRELVTGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQ- 641
+ G+ TG +G L+LVDLAGSER++ S VGERL+E Q IN+SLS LGDVI AL
Sbjct: 249 LEGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSP 308
Query: 642 --KSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIEL 698
+ HIP+RNSKLT +LQ SL G +KTLMFV+I+P + ETI++L+FA +V++ ++
Sbjct: 309 DGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNTKM 367
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 151/384 (39%), Positives = 217/384 (56%), Gaps = 14/384 (3%)
Query: 319 EVKEIQSNWEEELYRLEHYIKNLEVASSSYQKVLEENRVLYNQVQDLKGTIRVYCRVRPF 378
EV ++ EE L E LE + E + L+N V DL+G IRV+CR+RP
Sbjct: 8 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPP 67
Query: 379 LPGQSNGQSTVDYIGENGNIMVTNPFKQGKD--ARKMFLFNKVFAPNVSQEQIYVDTQPL 436
L + N + + + + Q K +++F F++VF P SQ I+ PL
Sbjct: 68 LESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPL 127
Query: 437 VRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQ-ISNTRGDMIK 495
++S LDG+N+CIFAYGQ+GSGKTYTM G E+ GV R + LF I R +
Sbjct: 128 IQSALDGYNICIFAYGQSGSGKTYTMDG----VPESVGVIPRTVDLLFDSIRGYRNLGWE 183
Query: 496 YEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQ-ANGLNVPDASLIPVTSTEDVIELM 554
YE+ +EIYNE + DLL ++ + ++IR N + V + + V + LM
Sbjct: 184 YEIKATFLEIYNEVLYDLLSNE--QKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLM 241
Query: 555 RIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKSEA 614
+ NRA +TA NERSSRSH+V + ++GR I G ++LVDLAGSE S
Sbjct: 242 HTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPK 297
Query: 615 VGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHIN 674
R+ E ++INRSLS L +VI AL QK HIPYRNSKLT +L SLGG++KTLMF++++
Sbjct: 298 TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVS 357
Query: 675 PEHNAIGETISTLKFAERVSSIEL 698
P + E++ +L+FA V+S ++
Sbjct: 358 PFQDCFQESVKSLRFAASVNSCKM 381
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 240 bits (613), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 145/349 (41%), Positives = 208/349 (59%), Gaps = 25/349 (7%)
Query: 367 GTIRVYCRVRPFLPGQSNGQST---VDYIGENGNIMVTNPFKQGKDAR-KMFLFNKVFAP 422
G IRVYCR+RP L N ++ V+ +N + K A+ F F+K+F
Sbjct: 2 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 61
Query: 423 NVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRD 482
+ ++ + LV+S LDG+NVCIFAYGQTGSGKT+TM P G+ +
Sbjct: 62 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPSTISH 115
Query: 483 LFQISN---TRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNR-------RLDIRNTAQAN 532
+F N T+G Y+V + IEIYNE + DLL SD +N+ + +IR+ +
Sbjct: 116 IFNWINKLKTKG--WDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 173
Query: 533 GLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGS 592
+ + + + S E V +++ K R+ +TA NE SSRSHS+ +H+ G TG+
Sbjct: 174 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA 233
Query: 593 ILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSA---HIPYR 649
G L+LVDLAGSER++ S+ VG+RL+E Q+IN+SLS LGDVI AL Q + HIP+R
Sbjct: 234 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFR 293
Query: 650 NSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIEL 698
NSKLT +LQ SL G +KTLMFV+I+P + I ET+++L+FA +V+S L
Sbjct: 294 NSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 342
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 239 bits (611), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 144/351 (41%), Positives = 209/351 (59%), Gaps = 25/351 (7%)
Query: 365 LKGTIRVYCRVRPFLPGQSNGQST---VDYIGENGNIMVTNPFKQGKDAR-KMFLFNKVF 420
++G IRVYCR+RP L N ++ V+ +N + K A+ F F+K+F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 421 APNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRAL 480
+ ++ + LV+S LDG+NVCIFAYGQTGSGKT+TM P G+ +
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPSTI 114
Query: 481 RDLFQISN---TRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNR-------RLDIRNTAQ 530
+F N T+G Y+V + IEIYNE + DLL SD +N+ + +IR+ +
Sbjct: 115 SHIFNWINKLKTKG--WDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 531 ANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVT 590
+ + + + S E V +++ K R+ +TA NE SSRSHS+ +H+ G T
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT 232
Query: 591 GSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSA---HIP 647
G+ G L+LVDLAGS R++ S+ VG+RL+E Q+IN+SLS LGDVI AL Q + HIP
Sbjct: 233 GAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIP 292
Query: 648 YRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIEL 698
+RNSKLT +LQ SL G +KTLMFV+I+P + I ET+++L+FA +V+S L
Sbjct: 293 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 239 bits (611), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 144/351 (41%), Positives = 209/351 (59%), Gaps = 25/351 (7%)
Query: 365 LKGTIRVYCRVRPFLPGQSNGQST---VDYIGENGNIMVTNPFKQGKDAR-KMFLFNKVF 420
++G IRVYCR+RP L N ++ V+ +N + K A+ F F+K+F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 421 APNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRAL 480
+ ++ + LV+S LDG+NVCIFAYGQTGSGKT+TM P G+ +
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPSTI 114
Query: 481 RDLFQISN---TRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNR-------RLDIRNTAQ 530
+F N T+G Y+V + IEIYNE + DLL SD +N+ + +IR+ +
Sbjct: 115 SHIFNWINKLKTKG--WDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 531 ANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVT 590
+ + + + S E V +++ K R+ +TA NE SS SHS+ +H+ G T
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT 232
Query: 591 GSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSA---HIP 647
G+ G L+LVDLAGSER++ S+ VG+RL+E Q+IN+SLS LGDVI AL Q + HIP
Sbjct: 233 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIP 292
Query: 648 YRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIEL 698
+RNSKLT +LQ SL G +KTLMFV+I+P + I ET+++L+FA +V+S L
Sbjct: 293 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 144/351 (41%), Positives = 209/351 (59%), Gaps = 25/351 (7%)
Query: 365 LKGTIRVYCRVRPFLPGQSNGQST---VDYIGENGNIMVTNPFKQGKDAR-KMFLFNKVF 420
++G IRVYCR+RP L N ++ V+ +N + K A+ F F+K+F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 421 APNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRAL 480
+ ++ + LV+S LDG+NVCIFAYGQTGSGKT+TM P G+ +
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPSTI 114
Query: 481 RDLFQISN---TRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNR-------RLDIRNTAQ 530
+F N T+G Y+V + IEIYNE + DLL SD +N+ + +IR+ +
Sbjct: 115 SHIFNWINKLKTKG--WDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 531 ANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVT 590
+ + + + S E V +++ K R+ +TA NE SSRSHS+ +H+ G T
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT 232
Query: 591 GSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSA---HIP 647
G+ G L+LVDLAGSER++ S+ VG+RL+E Q+I +SLS LGDVI AL Q + HIP
Sbjct: 233 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIP 292
Query: 648 YRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIEL 698
+RNSKLT +LQ SL G +KTLMFV+I+P + I ET+++L+FA +V+S L
Sbjct: 293 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 150/339 (44%), Positives = 210/339 (61%), Gaps = 15/339 (4%)
Query: 368 TIRVYCRVRPFLPGQSNGQS---TVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNV 424
++RV R RP + G+ S VD + G + V NP + K F F+ V+ N
Sbjct: 22 SVRVVVRCRP-MNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNA 80
Query: 425 SQEQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDL 483
Q ++Y +T +PLV SVL GFN IFAYGQTG+GKTYTM G E+ GV + +
Sbjct: 81 KQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKR-GVIPNSFDHI 139
Query: 484 F-QISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLI 542
F IS ++ +Y V +EIY E++RDLL D + +RL+++ G+ V D S
Sbjct: 140 FTHISRSQNQ--QYLVRASYLEIYQEEIRDLLSKDQT-KRLELKERPDT-GVYVKDLSSF 195
Query: 543 PVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGREL-VTGS--ILKGCLH 599
S +++ +M +G +NR+VGAT +NE SSRSH++ + + E+ + G I G L+
Sbjct: 196 VTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLN 255
Query: 600 LVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQ-KSAHIPYRNSKLTQVLQ 658
LVDLAGSER K+ A GERLKEA IN SLSALG+VISAL KS HIPYR+SKLT++LQ
Sbjct: 256 LVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQ 315
Query: 659 DSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIE 697
DSLGG+AKT+M ++ P + ET++TL++A R +I+
Sbjct: 316 DSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIK 354
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 224 bits (570), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/343 (39%), Positives = 205/343 (59%), Gaps = 14/343 (4%)
Query: 368 TIRVYCRVRP--FLPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVS 425
+I+V R RP + +S GQ V + G + + K+A+ F F++VF +
Sbjct: 7 SIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTV------DSKEAQGSFTFDRVFDMSCK 60
Query: 426 QEQIY-VDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLF 484
Q I+ +P V +L+G+N +FAYGQTG+GK+YTM G + + GV R + +F
Sbjct: 61 QSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIF 120
Query: 485 QISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIPV 544
+ I+Y V V +EIY E++RDLL N + + + G+ V I V
Sbjct: 121 TSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPV---HEEKNRGVYVKGLLEIYV 177
Query: 545 TSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLA 604
+S ++V E+MR G RAV AT +N+ SSRSHS+ + + + + TGS G L LVDLA
Sbjct: 178 SSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLA 237
Query: 605 GSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQ-KSAHIPYRNSKLTQVLQDSLGG 663
GSE+V K+ A G+ L+EA+ IN+SLSALG VI+AL KS+H+PYR+SKLT++LQ+SLGG
Sbjct: 238 GSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGG 297
Query: 664 HAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKE 706
+++T + ++ +P ET+STL+F R SI+ A+ N E
Sbjct: 298 NSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK-NKAKVNAE 339
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 222 bits (566), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 139/356 (39%), Positives = 200/356 (56%), Gaps = 36/356 (10%)
Query: 365 LKGTIRVYCRVRPFL-------------------PGQSNGQSTVDYIGENGNIMVTNPFK 405
LKG IRV+CR+R P N +S + + + N F
Sbjct: 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRN---INNNFS 428
Query: 406 QGKDARKMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGP 465
+ FLF+K+F S + ++ + L++ LDG NVC+FAYGQTGSGKT+TMS P
Sbjct: 429 NLR-----FLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP 483
Query: 466 DLTAEETWGVNYRALRDLFQ-ISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSD-GSNRRL 523
T G+ +L+ +F I + Y V + IEIYNE + DLL N +
Sbjct: 484 ------TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKY 537
Query: 524 DIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHV 583
+I++ A V + S I + S E I ++ K R+ AT N+ SSRSHS+ + +
Sbjct: 538 EIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDL 597
Query: 584 LGRELVTGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKS 643
G +T G L+L+DLAGSER++ S A G+RLKE Q IN+SLS LGDVI +L K
Sbjct: 598 QGYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKD 657
Query: 644 -AHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIEL 698
+H+PYRNSKLT +L+ SLGG++KTLMFV+I+P + ETI++L+FA +V++ +
Sbjct: 658 GSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 216 bits (551), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 131/340 (38%), Positives = 197/340 (57%), Gaps = 35/340 (10%)
Query: 369 IRVYCRVRPFLPGQSN--GQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQ 426
I+V CR RP + N + + GE+ ++ + P+ F++VF + SQ
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYA----------FDRVFQSSTSQ 58
Query: 427 EQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQ 485
EQ+Y D + +V+ VL+G+N IFAYGQT SGKT+TM G L E G+ R ++D+F
Sbjct: 59 EQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGK-LHDPEGMGIIPRIVQDIFN 117
Query: 486 ISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIP-- 543
+ + +++ + V EIY +++RDLL D S L + D + +P
Sbjct: 118 YIYSMDENLEFHIKVSYFEIYLDKIRDLL--DVSKTNLSVH----------EDKNRVPYV 165
Query: 544 -------VTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKG 596
V S ++V++ + G+ NR V T +NE SSRSHS+ ++V T L G
Sbjct: 166 KGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSG 225
Query: 597 CLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQV 656
L+LVDLAGSE+V K+ A G L EA++IN+SLSALG+VISALA+ S ++PYR+SK+T++
Sbjct: 226 KLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRI 285
Query: 657 LQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
LQDSLGG+ +T + + +P ET STL F +R +I
Sbjct: 286 LQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 216 bits (551), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 131/341 (38%), Positives = 198/341 (58%), Gaps = 35/341 (10%)
Query: 369 IRVYCRVRPFLPGQSN--GQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQ 426
I+V CR RP + N + + GE+ ++ + P+ F++VF + SQ
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYA----------FDRVFQSSTSQ 58
Query: 427 EQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQ 485
EQ+Y D + +V+ VL+G+N IFAYGQT SGKT+TM G L E G+ R ++D+F
Sbjct: 59 EQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGK-LHDPEGMGIIPRIVQDIFN 117
Query: 486 ISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIP-- 543
+ + +++ + V EIY +++RDLL D S L + D + +P
Sbjct: 118 YIYSMDENLEFHIKVSYFEIYLDKIRDLL--DVSKTNLSVH----------EDKNRVPYV 165
Query: 544 -------VTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKG 596
V S ++V++ + G+ NR V T +NE SSRSHS+ ++V T L G
Sbjct: 166 KGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSG 225
Query: 597 CLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQV 656
L+LVDLAGSE+V K+ A G L EA++IN+SLSALG+VISALA+ S ++PYR+SK+T++
Sbjct: 226 KLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRI 285
Query: 657 LQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIE 697
LQDSLGG+ +T + + +P ET STL F +R +I+
Sbjct: 286 LQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 214 bits (545), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 197/341 (57%), Gaps = 35/341 (10%)
Query: 369 IRVYCRVRPFLPGQSN--GQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQ 426
I+V CR RP + N + + GE+ ++ + P+ F++VF + SQ
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMIASKPYA----------FDRVFQSSTSQ 58
Query: 427 EQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQ 485
EQ+Y D + +V+ VL+G+N IFAYGQT SGK +TM G L E G+ R ++D+F
Sbjct: 59 EQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGK-LHDPEGMGIIPRIVQDIFN 117
Query: 486 ISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIP-- 543
+ + +++ + V EIY +++RDLL D S L + D + +P
Sbjct: 118 YIYSMDENLEFHIKVSYFEIYLDKIRDLL--DVSKTNLSVH----------EDKNRVPYV 165
Query: 544 -------VTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKG 596
V S ++V++ + G+ NR V T +NE SSRSHS+ ++V T L G
Sbjct: 166 KGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSG 225
Query: 597 CLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQV 656
L+LVDLAGSE+V K+ A G L EA++IN+SLSALG+VISALA+ S ++PYR+SK+T++
Sbjct: 226 KLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRI 285
Query: 657 LQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIE 697
LQDSLGG+ +T + + +P ET STL F +R +I+
Sbjct: 286 LQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 213 bits (542), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 197/340 (57%), Gaps = 26/340 (7%)
Query: 369 IRVYCRVRPFLPGQ--SNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQ 426
+RV RVRP LP + QS + G + + G+D + F F+ V A + Q
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL------GRD--RHFGFHVVLAEDAGQ 64
Query: 427 EQIY-VDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTA--EETWGVNYRALRDL 483
E +Y QPL+ + +GFN +FAYGQTGSGKTYTM + + E+ G+ RA+ +
Sbjct: 65 EAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEA 124
Query: 484 FQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIP 543
F++ + D++ V V +E+Y E+ RDLL ++R + +R + N + + +
Sbjct: 125 FKLID-ENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGN-VVLCGVKEVD 182
Query: 544 VTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGR--------ELVTGSILK 595
V ++V+ L+ +G R GAT LN SSRSH+V TV + R G +L
Sbjct: 183 VEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLV 242
Query: 596 GCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALA---QKSAHIPYRNSK 652
H VDLAGSERV K+ + GERLKE+ IN SL ALG+VISAL ++ +HIPYR+SK
Sbjct: 243 SKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSK 302
Query: 653 LTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAER 692
+T++L+DSLGG+AKT+M ++P + ET++TL +A R
Sbjct: 303 ITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASR 342
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 211 bits (537), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 194/332 (58%), Gaps = 11/332 (3%)
Query: 368 TIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQE 427
+I+V CR RP S ++ ++ + N + N A K++LF+KVF PN SQE
Sbjct: 12 SIKVVCRFRPL--NDSEEKAGSKFVVKFPNNVEENCISI---AGKVYLFDKVFKPNASQE 66
Query: 428 QIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQI 486
++Y + + +V VL G+N IFAYGQT SGKT+TM G + G+ R + D+F
Sbjct: 67 KVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGV-IGDSVKQGIIPRIVNDIFNH 125
Query: 487 SNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIPVTS 546
+++ + V EIY +++RDLL D S L + V A+ V+S
Sbjct: 126 IYAMEVNLEFHIKVSYYEIYMDKIRDLL--DVSKVNLSVHEDKNRVPY-VKGATERFVSS 182
Query: 547 TEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAGS 606
EDV E++ G+ NR + T +NE SSRSHSV ++V L L G L+LVDLAGS
Sbjct: 183 PEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGS 242
Query: 607 ERVDKSEAVGERLKEAQHINRSLSALGDVISALAQ-KSAHIPYRNSKLTQVLQDSLGGHA 665
E+V K+ A G L EA++IN+SLSALG+VISALA HIPYR+SKLT++LQ+SLGG+A
Sbjct: 243 EKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNA 302
Query: 666 KTLMFVHINPEHNAIGETISTLKFAERVSSIE 697
+T + + +P ET STL F R +++
Sbjct: 303 RTTIVICCSPASFNESETKSTLDFGRRAKTVK 334
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 206 bits (525), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 132/339 (38%), Positives = 193/339 (56%), Gaps = 18/339 (5%)
Query: 369 IRVYCRVRPFLPGQS--NGQSTVDYIGENGNIMVTNPFK-----QGKDARKMFLFNKVFA 421
I+V R RP ++ N + + + ++V P + Q K + F F+ V+
Sbjct: 6 IKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYD 65
Query: 422 PNVSQEQIY-VDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRAL 480
I+ +PL+ +VL+GFN IFAYGQTG+GKT+TM G +E G +
Sbjct: 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGG----NKEEPGAIPNSF 121
Query: 481 RDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDAS 540
+ LF N+ + V +E+YNE++RDL+ +N +L ++ + G+ V S
Sbjct: 122 KHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLI---KNNTKLPLKED-KTRGIYVDGLS 177
Query: 541 LIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGS--ILKGCL 598
+ VT+ ++ LM G NR V AT +N+ SSRSHS+ V + E++ I G L
Sbjct: 178 MHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKL 237
Query: 599 HLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQ 658
+LVDLAGSER K+ A GE L E IN SLSALG VIS L + + HIPYR+SKLT++LQ
Sbjct: 238 NLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQ 297
Query: 659 DSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIE 697
DSLGG++KTLM +I+P ET+STL++A+R I+
Sbjct: 298 DSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIK 336
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 206 bits (524), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 136/344 (39%), Positives = 202/344 (58%), Gaps = 21/344 (6%)
Query: 369 IRVYCRVRPFLPGQSNGQS--TVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQ 426
I+VY RVRP + +S VD +G +VT K +K F F++ F P Q
Sbjct: 25 IQVYVRVRPLNSRERCIRSAEVVDVVGPRE--VVTRHTLDSKLTKK-FTFDRSFGPESKQ 81
Query: 427 EQIY-VDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAE--ETW------GVNY 477
+Y V PL+ VL+G+N +FAYGQTG+GKT+TM G + TAE +W G+
Sbjct: 82 CDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNE-TAELKSSWEDDSDIGIIP 140
Query: 478 RALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVP 537
RAL LF R ++Y + + +E+YNE++ DLL +D + + ++ + + +
Sbjct: 141 RALSHLFD--ELRMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQ 198
Query: 538 DASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRE--LVTGSILK 595
IPV S +DV +L+ G++ R T +N +SSRSH+V ++ V RE + +LK
Sbjct: 199 GLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLK 258
Query: 596 -GCLHLVDLAGSERVDKS-EAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKL 653
G L+LVDLAGSE V K+ G R++E +IN+SL LG VI+AL ++ H+PYR SKL
Sbjct: 259 IGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKL 318
Query: 654 TQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIE 697
T++LQ+SLGG KT + I+P H I ET+STL++A R +I+
Sbjct: 319 TRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQ 362
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/340 (38%), Positives = 195/340 (57%), Gaps = 26/340 (7%)
Query: 369 IRVYCRVRPFLPGQ--SNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQ 426
+RV RVRP LP + QS + G + + G+D + F F+ V A + Q
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL------GRD--RHFGFHVVLAEDAGQ 64
Query: 427 EQIY-VDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTA--EETWGVNYRALRDL 483
E +Y QPL+ + +GFN +FAYGQTGSGKTYTM + + E+ G+ RA+ +
Sbjct: 65 EAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEA 124
Query: 484 FQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIP 543
F++ + D++ V V +E+Y E+ RDLL ++R + +R + N + + +
Sbjct: 125 FKLID-ENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGN-VVLCGVKEVD 182
Query: 544 VTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGR--------ELVTGSILK 595
V ++V+ L+ +G R GAT LN SSRSH+V TV + R G +L
Sbjct: 183 VEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLV 242
Query: 596 GCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALA---QKSAHIPYRNSK 652
H VDLAGSERV K+ + GE KE+ IN SL ALG+VISAL ++ ++IPYR+SK
Sbjct: 243 SKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSK 302
Query: 653 LTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAER 692
+T++L+DSLGG+AKT+M ++P + ET++TL +A R
Sbjct: 303 ITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASR 342
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 203 bits (516), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 134/332 (40%), Positives = 192/332 (57%), Gaps = 35/332 (10%)
Query: 396 GNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVDT-QPLVRSVLDGFNVCIFAYGQT 454
G + + NP + K F F+ V+ + Q +Y +T +PL+ SVL GFN +FAYGQT
Sbjct: 52 GQVTLRNPRAAPGELPKTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQT 111
Query: 455 GSGKTYTMSGPDLTAEETWGVNYRALRDLF-QISNTRGDMIKYEVGVQMIEIYNEQVRDL 513
G+GKTYTM G E GV A +F IS ++ +Y V +EIY E++RDL
Sbjct: 112 GTGKTYTMQG-TWVEPELRGVIPNAFEHIFTHISRSQNQ--QYLVRASYLEIYQEEIRDL 168
Query: 514 LVSDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSS 573
L S +RL+++ + G+ + D S + +++ +M +G + RAVG+T +NE SS
Sbjct: 169 L-SKEPGKRLELKENPET-GVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSS 226
Query: 574 RSHSVLTVHVLGRELVTGS---ILKGCLHLVDLAGSERVDKS------------------ 612
RSH++ + V E + I G L+LVDLAGSER +K+
Sbjct: 227 RSHAIFIITVECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGG 286
Query: 613 ------EAVGERLKEAQHINRSLSALGDVISALA-QKSAHIPYRNSKLTQVLQDSLGGHA 665
A GER KEA IN SLSALG+VI+ALA +S HIPYR+SKLT++LQDSLGG+A
Sbjct: 287 GGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNA 346
Query: 666 KTLMFVHINPEHNAIGETISTLKFAERVSSIE 697
KT+M + P ++ E++STL+FA R +I+
Sbjct: 347 KTIMVATLGPASHSYDESLSTLRFANRAKNIK 378
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 198/358 (55%), Gaps = 35/358 (9%)
Query: 367 GTIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVS- 425
+++V RVRPF + + S + NP KQ K+ K F F+ + + S
Sbjct: 20 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNP-KQPKETPKSFSFDYSYWSHTSP 78
Query: 426 -------QEQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNY 477
Q+Q+Y D + +++ +G+NVCIFAYGQTG+GK+YTM G ++ G+
Sbjct: 79 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ--EKDQQGIIP 136
Query: 478 RALRDLF-QISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNV 536
+ DLF +I++T D + Y V V +EIY E+VRDLL + + L +R G V
Sbjct: 137 QLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL-NPKNKGNLRVREHPLL-GPYV 194
Query: 537 PDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTV------HVLGRELVT 590
D S + VTS D+ +LM G K R V AT +NE SSRSH+V + H + T
Sbjct: 195 EDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITT 254
Query: 591 GSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSA------ 644
+ K + LVDLAGSER D + A G RLKE +IN+SL+ LG VISALA+ +
Sbjct: 255 EKVSK--ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNK 312
Query: 645 ------HIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
IPYR+S LT +L+++LGG+++T M ++P ET+STL++A+R I
Sbjct: 313 KKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 370
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 198/358 (55%), Gaps = 35/358 (9%)
Query: 367 GTIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVS- 425
+++V RVRPF + + S + NP KQ K+ K F F+ + + S
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNP-KQPKETPKSFSFDYSYWSHTSP 62
Query: 426 -------QEQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNY 477
Q+Q+Y D + +++ +G+NVCIFAYGQTG+GK+YTM G ++ G+
Sbjct: 63 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ--EKDQQGIIP 120
Query: 478 RALRDLF-QISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNV 536
+ DLF +I++T D + Y V V +EIY E+VRDLL + + L +R G V
Sbjct: 121 QLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL-NPKNKGNLRVREHPLL-GPYV 178
Query: 537 PDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTV------HVLGRELVT 590
D S + VTS D+ +LM G K R V AT +NE SSRSH+V + H + T
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITT 238
Query: 591 GSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSA------ 644
+ K + LVDLAGSER D + A G RLKE +IN+SL+ LG VISALA+ +
Sbjct: 239 EKVSK--ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNK 296
Query: 645 ------HIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
IPYR+S LT +L+++LGG+++T M ++P ET+STL++A+R I
Sbjct: 297 KKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 198/358 (55%), Gaps = 35/358 (9%)
Query: 367 GTIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVS- 425
+++V RVRPF + + S + NP KQ K+ K F F+ + + S
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNP-KQPKETPKSFSFDYSYWSHTSP 62
Query: 426 -------QEQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNY 477
Q+Q+Y D + +++ +G+NVCIFAYGQTG+GK+YTM G ++ G+
Sbjct: 63 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ--EKDQQGIIP 120
Query: 478 RALRDLF-QISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNV 536
+ DLF +I++T D + Y V V +EIY E+VRDLL + + L +R G V
Sbjct: 121 QLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL-NPKNKGNLRVREHPLL-GPYV 178
Query: 537 PDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTV------HVLGRELVT 590
D S + VTS D+ +LM G K R V AT +NE SSRSH+V + H + T
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITT 238
Query: 591 GSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSA------ 644
+ K + LVDLAGSER D + A G RLKE +IN+SL+ LG VISALA+ +
Sbjct: 239 EKVSK--ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNK 296
Query: 645 ------HIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
IPYR+S LT +L+++LGG+++T M ++P ET+STL++A+R I
Sbjct: 297 KKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 200 bits (508), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 198/358 (55%), Gaps = 35/358 (9%)
Query: 367 GTIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVS- 425
+++V RVRPF + + S + NP KQ K+ K F F+ + + S
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNP-KQPKETPKSFSFDYSYWSHTSP 62
Query: 426 -------QEQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNY 477
Q+Q+Y D + +++ +G+NVCIFAYGQTG+GK+YTM G ++ G+
Sbjct: 63 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ--EKDQQGIIP 120
Query: 478 RALRDLF-QISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNV 536
+ DLF +I++T D + Y V V +EIY E+VRDLL + + L +R G V
Sbjct: 121 QLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL-NPKNKGNLRVREHPLL-GPYV 178
Query: 537 PDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTV------HVLGRELVT 590
D S + VTS D+ +LM G K R V AT +NE SSRSH+V + H + T
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITT 238
Query: 591 GSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSA------ 644
+ K + LVDLAGSER D + A G RLKE +IN+SL+ LG VISALA+ +
Sbjct: 239 EKVSK--ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNK 296
Query: 645 ------HIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
IPYR+S LT +L+++LGG+++T M ++P ET+STL++A+R I
Sbjct: 297 KKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 199 bits (505), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 190/343 (55%), Gaps = 17/343 (4%)
Query: 369 IRVYCRVRPF--LPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQ 426
I+V RVRPF +++ S V+ + V K +RK + F+ VF + Q
Sbjct: 19 IQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 427 EQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEE-TW------GVNYR 478
+Y P++ V+ G+N IFAYGQTG+GKT+TM G EE W G+ R
Sbjct: 79 IDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIPR 138
Query: 479 ALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLL--VSDGSNRRLDIRNTAQANGLNV 536
L +F+ G ++ V V ++EIYNE++ DLL SD S R + G+ +
Sbjct: 139 TLHQIFEKLTDNG--TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 196
Query: 537 PDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGS---I 593
I V + ++V +++ G R AT +N SSRSHSV +V + +E +
Sbjct: 197 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 256
Query: 594 LKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKL 653
G L+LVDLAGSE + +S AV +R +EA +IN+SL LG VI+AL +++ H+PYR SKL
Sbjct: 257 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKL 316
Query: 654 TQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
T++LQDSLGG +T + I+P + ET+STL++A R +I
Sbjct: 317 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 199 bits (505), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 190/343 (55%), Gaps = 17/343 (4%)
Query: 369 IRVYCRVRPF--LPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQ 426
I+V R RPF +++ S V+ + V K +RK + F+ VF + Q
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 427 EQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEE-TW------GVNYR 478
+Y P++ V+ G+N IFAYGQTG+GKT+TM G EE TW G+ R
Sbjct: 79 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIPR 138
Query: 479 ALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLL--VSDGSNRRLDIRNTAQANGLNV 536
L +F+ G ++ V V ++EIYNE++ DLL SD S R + G+ +
Sbjct: 139 TLHQIFEKLTDNG--TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 196
Query: 537 PDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGS---I 593
I V + ++V +++ G R AT +N SSRSHSV +V + +E +
Sbjct: 197 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 256
Query: 594 LKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKL 653
G L+LVDLAGSE + +S AV +R +EA +IN+SL LG VI+AL +++ H+PYR SKL
Sbjct: 257 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKL 316
Query: 654 TQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
T++LQDSLGG +T + I+P + ET+STL++A R +I
Sbjct: 317 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 199 bits (505), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 205/351 (58%), Gaps = 34/351 (9%)
Query: 369 IRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQG---KDAR---KMFLFNKVF-A 421
++V R+RP +++ + + + N ++ NP DAR K+F ++ F +
Sbjct: 3 VKVAVRIRPMNRRETDLHTKC-VVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWS 61
Query: 422 PNVSQEQIYVDT--------QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETW 473
+ S ++ Y + ++++ DG+N CIFAYGQTGSGK+YTM G TA++
Sbjct: 62 MDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMG---TADQP- 117
Query: 474 GVNYRALRDLFQ-ISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQAN 532
G+ R LF+ + ++V V +EIYNE+VRDLL GS + L +R +
Sbjct: 118 GLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVL- 176
Query: 533 GLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTV---HVLGRELV 589
G V S + VTS +D+ LM G K+R V AT +NE SSRSH+V + H L ++
Sbjct: 177 GPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTL-YDVK 235
Query: 590 TGSILK--GCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSA--- 644
+G+ + G L LVDLAGSER K+ A G+RLKE +IN+SL+ LG VISALA +SA
Sbjct: 236 SGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKN 295
Query: 645 ---HIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAER 692
+PYR+S LT +L+DSLGG++KT M ++P + ET+STL++A+R
Sbjct: 296 KNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADR 346
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 199 bits (505), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 190/343 (55%), Gaps = 17/343 (4%)
Query: 369 IRVYCRVRPF--LPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQ 426
I+V R RPF +++ S V+ + V K +RK + F+ VF + Q
Sbjct: 18 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 77
Query: 427 EQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEE-TW------GVNYR 478
+Y P++ V+ G+N IFAYGQTG+GKT+TM G EE TW G+ R
Sbjct: 78 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPR 137
Query: 479 ALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLL--VSDGSNRRLDIRNTAQANGLNV 536
L +F+ G ++ V V ++EIYNE++ DLL SD S R + G+ +
Sbjct: 138 TLHQIFEKLTDNG--TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 195
Query: 537 PDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGS---I 593
I V + ++V +++ G R AT +N SSRSHSV +V + +E +
Sbjct: 196 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 255
Query: 594 LKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKL 653
G L+LVDLAGSE + +S AV +R +EA +IN+SL LG VI+AL +++ H+PYR SKL
Sbjct: 256 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKL 315
Query: 654 TQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
T++LQDSLGG +T + I+P + ET+STL++A R +I
Sbjct: 316 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 190/343 (55%), Gaps = 17/343 (4%)
Query: 369 IRVYCRVRPFLPGQ--SNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQ 426
I+V R RPF + ++ S V+ + V K +RK + F+ VF + Q
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 427 EQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEE-TW------GVNYR 478
+Y P++ V+ G+N IFAYGQTG+GKT+TM G EE TW G+ R
Sbjct: 79 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPR 138
Query: 479 ALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLL--VSDGSNRRLDIRNTAQANGLNV 536
L +F+ G ++ V V ++EIYNE++ DLL SD S R + G+ +
Sbjct: 139 TLHQIFEKLTDNG--TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 196
Query: 537 PDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGS---I 593
I V + ++V +++ G R AT +N SSRSHSV +V + +E +
Sbjct: 197 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 256
Query: 594 LKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKL 653
G L+LVDLAGSE + +S AV +R +EA +IN+SL LG VI+AL +++ H+PYR SKL
Sbjct: 257 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKL 316
Query: 654 TQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
T++LQDSLGG +T + I+P + ET+STL++A R +I
Sbjct: 317 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 190/343 (55%), Gaps = 17/343 (4%)
Query: 369 IRVYCRVRPF--LPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQ 426
I+V R RPF +++ S V+ + V K +RK + F+ VF + Q
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 427 EQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEE-TW------GVNYR 478
+Y P++ V+ G+N IFAYGQTG+GKT+TM G EE TW G+ R
Sbjct: 79 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPR 138
Query: 479 ALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLL--VSDGSNRRLDIRNTAQANGLNV 536
L +F+ G ++ V V ++EIYNE++ DLL SD S R + G+ +
Sbjct: 139 TLHQIFEKLTDNG--TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 196
Query: 537 PDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGS---I 593
I V + ++V +++ G R AT +N SSRSHSV +V + +E +
Sbjct: 197 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 256
Query: 594 LKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKL 653
G L+LVDLAGSE + +S AV +R +EA +IN+SL LG VI+AL +++ H+PYR SKL
Sbjct: 257 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKL 316
Query: 654 TQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
T++LQDSLGG +T + I+P + ET+STL++A R +I
Sbjct: 317 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 190/343 (55%), Gaps = 17/343 (4%)
Query: 369 IRVYCRVRPF--LPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQ 426
I+V R RPF +++ S V+ + V K +RK + F+ VF + Q
Sbjct: 21 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 80
Query: 427 EQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEE-TW------GVNYR 478
+Y P++ V+ G+N IFAYGQTG+GKT+TM G EE TW G+ R
Sbjct: 81 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPR 140
Query: 479 ALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLL--VSDGSNRRLDIRNTAQANGLNV 536
L +F+ G ++ V V ++EIYNE++ DLL SD S R + G+ +
Sbjct: 141 TLHQIFEKLTDNG--TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 198
Query: 537 PDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGS---I 593
I V + ++V +++ G R AT +N SSRSHSV +V + +E +
Sbjct: 199 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 258
Query: 594 LKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKL 653
G L+LVDLAGSE + +S AV +R +EA +IN+SL LG VI+AL +++ H+PYR SKL
Sbjct: 259 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKL 318
Query: 654 TQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
T++LQDSLGG +T + I+P + ET+STL++A R +I
Sbjct: 319 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 190/343 (55%), Gaps = 17/343 (4%)
Query: 369 IRVYCRVRPF--LPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQ 426
I+V R RPF +++ S V+ + V K +RK + F+ VF + Q
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 427 EQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEE-TW------GVNYR 478
+Y P++ V+ G+N IFAYGQTG+GKT+TM G EE TW G+ R
Sbjct: 79 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIPR 138
Query: 479 ALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLL--VSDGSNRRLDIRNTAQANGLNV 536
L +F+ G ++ V V ++EIYNE++ DLL SD S R + G+ +
Sbjct: 139 TLHQIFEKLTDNG--TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 196
Query: 537 PDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGS---I 593
I V + ++V +++ G R AT +N SSRSHSV +V + +E +
Sbjct: 197 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 256
Query: 594 LKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKL 653
G L+LVDLAGSE + +S AV +R +EA +IN+SL LG VI+AL +++ H+PYR SKL
Sbjct: 257 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKL 316
Query: 654 TQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
T++LQDSLGG +T + I+P + ET+STL++A R +I
Sbjct: 317 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 198 bits (503), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 190/343 (55%), Gaps = 17/343 (4%)
Query: 369 IRVYCRVRPF--LPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQ 426
I+V R RPF +++ S V+ + V K +RK + F+ VF + Q
Sbjct: 10 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 69
Query: 427 EQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEE-TW------GVNYR 478
+Y P++ V+ G+N IFAYGQTG+GKT+TM G EE TW G+ R
Sbjct: 70 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPR 129
Query: 479 ALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLL--VSDGSNRRLDIRNTAQANGLNV 536
L +F+ G ++ V V ++EIYNE++ DLL SD S R + G+ +
Sbjct: 130 TLHQIFEKLTDNG--TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 187
Query: 537 PDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGS---I 593
I V + ++V +++ G R AT +N SSRSHSV +V + +E +
Sbjct: 188 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 247
Query: 594 LKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKL 653
G L+LVDLAGSE + +S AV +R +EA +IN+SL LG VI+AL +++ H+PYR SKL
Sbjct: 248 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKL 307
Query: 654 TQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
T++LQDSLGG +T + I+P + ET+STL++A R +I
Sbjct: 308 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 190/343 (55%), Gaps = 17/343 (4%)
Query: 369 IRVYCRVRPFLPGQ--SNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQ 426
I+V R RPF + ++ S V+ + V K +RK + F+ VF + Q
Sbjct: 4 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 63
Query: 427 EQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEE-TW------GVNYR 478
+Y P++ V+ G+N IFAYGQTG+GKT+TM G EE TW G+ R
Sbjct: 64 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPR 123
Query: 479 ALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLL--VSDGSNRRLDIRNTAQANGLNV 536
L +F+ G ++ V V ++EIYNE++ DLL SD S R + G+ +
Sbjct: 124 TLHQIFEKLTDNG--TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 181
Query: 537 PDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGS---I 593
I V + ++V +++ G R AT +N SSRSHSV +V + +E +
Sbjct: 182 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 241
Query: 594 LKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKL 653
G L+LVDLAGSE + +S AV +R +EA +IN+SL LG VI+AL +++ H+PYR SKL
Sbjct: 242 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKL 301
Query: 654 TQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
T++LQDSLGG +T + I+P + ET+STL++A R +I
Sbjct: 302 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 195 bits (496), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 127/304 (41%), Positives = 184/304 (60%), Gaps = 27/304 (8%)
Query: 405 KQGKDARKMFLFNKVFAPNVSQEQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463
KQ KD + F+F+ VF +Q +++ T +P++RS L+G+N + AYG TG+GKT+TM
Sbjct: 67 KQNKDLK--FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124
Query: 464 GPDLTAEETWGVNYRALRDLFQISNTRGDMIKYE----VGVQMIEIYNEQVRDLLVSDGS 519
G +A+E GV Y + L++ D IK E V +E+YNEQ+RDLLV+ G
Sbjct: 125 G---SADEP-GVMYLTMLHLYKCM----DEIKEEKICSTAVSYLEVYNEQIRDLLVNSGP 176
Query: 520 NRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVL 579
L +R Q G+ V +L S+E+++ L+ G KNR T +N SSRSH+V
Sbjct: 177 ---LAVREDTQ-KGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVF 232
Query: 580 TVHVLGRELVTGSILKGC----LHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDV 635
++ L ++ T SI + + L+DLAGSER S A G R E +INRSL ALG+V
Sbjct: 233 QIY-LRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNV 291
Query: 636 ISALA---QKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAER 692
I+ALA +K+ HIPYRNSKLT++L+DSLGG+ +T+M ++P +T +TLK+A R
Sbjct: 292 INALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANR 351
Query: 693 VSSI 696
I
Sbjct: 352 AKDI 355
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 194 bits (492), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 184/329 (55%), Gaps = 13/329 (3%)
Query: 369 IRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQ 428
+RV R+RPF+ G + G + + ++ ++ K + F+ + +Q+
Sbjct: 23 VRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLK-YQFDAFYGERSTQQD 81
Query: 429 IYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQIS 487
IY + QP++R +L+G N + AYG TG+GKT+TM G + E GV RAL DL Q++
Sbjct: 82 IYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLG----SPEQPGVIPRALMDLLQLT 137
Query: 488 ---NTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIPV 544
G V + +EIY E+V DLL D ++ L IR + N L +P S P+
Sbjct: 138 REEGAEGRPWALSVTMSYLEIYQEKVLDLL--DPASGDLVIREDCRGNIL-IPGLSQKPI 194
Query: 545 TSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRE-LVTGSILKGCLHLVDL 603
+S D +NR VGAT LN+RSSRSH+VL V V RE L +G L+L+DL
Sbjct: 195 SSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDL 254
Query: 604 AGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGG 663
AGSE ++ G RLKE+ IN SL LG V+ AL Q +PYR+SKLT++LQDSLGG
Sbjct: 255 AGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGG 314
Query: 664 HAKTLMFVHINPEHNAIGETISTLKFAER 692
A +++ +I PE +T+S L FA R
Sbjct: 315 SAHSILIANIAPERRFYLDTVSALNFAAR 343
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 181/330 (54%), Gaps = 49/330 (14%)
Query: 412 KMFLFNKVFAPNVSQEQIYVDTQPLVRSV--------LDGFNVCIFAYGQTGSGKTYTMS 463
K F F+K F + ++++ Y + + S+ +G++ CIFAYGQTGSGK+YTM
Sbjct: 96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Query: 464 G-PDLTAEETWGVNYRALRDLFQ-ISNTRGDM--IKYEVGVQMIEIYNEQVRDLLVSDGS 519
G PD G+ R DLFQ I++ + + I Y V V E+YNE VRDLL
Sbjct: 156 GTPDQP-----GLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVP 210
Query: 520 NR---RLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSH 576
N+ L +R + G V D + +PV E++I MRIG +R V +T +N+ SSRSH
Sbjct: 211 NKPPYYLKVRESP-TEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSH 269
Query: 577 SVLTVHV--LGRELVTGSILKGC--LHLVDLAGSERVDKSEAVGERLKEAQHINRSLSAL 632
+V T+ + + +L T + + LVDLAGSER +EA G+RL+E +IN+SL+ L
Sbjct: 270 AVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTL 329
Query: 633 GDVISALAQKSAH----------------------IPYRNSKLTQVLQDSLGGHAKTLMF 670
G VI+ALA + +PYR+S LT +L+DSLGG++KT M
Sbjct: 330 GRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMI 389
Query: 671 VHINPEHNAIGETISTLKFAERVSSIELGA 700
I+P ET+STL++A++ I A
Sbjct: 390 ACISP--TDYDETLSTLRYADQAKRIRTRA 417
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 186 bits (472), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 129/334 (38%), Positives = 188/334 (56%), Gaps = 23/334 (6%)
Query: 366 KGTIRVYCRVRPFLP-GQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNV 424
+G + V RVRP +S G++ Y + N++ D K F F++VF N
Sbjct: 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQ------VDGSKSFNFDRVFHGNE 56
Query: 425 SQEQIYVD-TQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDL 483
+ + +Y + P++ S + G+N IFAYGQT SGKTYTM G +E+ GV RA+ D+
Sbjct: 57 TTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMG----SEDHLGVIPRAIHDI 112
Query: 484 FQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIP 543
FQ D ++ + V +EIYNE + DLL + L IR N + V D +
Sbjct: 113 FQKIKKFPDR-EFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRN-VYVADLTEEV 170
Query: 544 VTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGREL-----VTGSILKGCL 598
V ++E ++ + G+K+R G T +N+RSSRSH++ + + RE GS+ L
Sbjct: 171 VYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHL 230
Query: 599 HLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALA--QKSAHIPYRNSKLTQV 656
+LVDLAGSER ++ A G RLKE +INRSL LG VI L+ Q I YR+SKLT++
Sbjct: 231 NLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRI 290
Query: 657 LQDSLGGHAKTLMFVHINPEHNAIGETISTLKFA 690
LQ+SLGG+AKT + I P + ET++ L+FA
Sbjct: 291 LQNSLGGNAKTRIICTITPV--SFDETLTALQFA 322
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 159/291 (54%), Gaps = 19/291 (6%)
Query: 414 FLFNKVFAPNVSQEQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEE- 471
F F+ F S E +Y T +PLV+++ +G FAYGQTGSGKT+TM G DL+ +
Sbjct: 123 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG-DLSGKSQ 181
Query: 472 --TWGVNYRALRDLFQISNT-RGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRL-DIRN 527
+ G+ A RD+F + N R + EV V EIYN +V DLL R L D R
Sbjct: 182 NASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQ 241
Query: 528 TAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRE 587
Q GL VT +DVI+++ +G R G T N SSRSH+ +
Sbjct: 242 QVQVVGLQE-----YLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQIL----- 291
Query: 588 LVTGSILKGCLHLVDLAGSER-VDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHI 646
L T L G LVDLAG+ER D S A + E IN+SL AL + I AL Q AH
Sbjct: 292 LRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT 351
Query: 647 PYRNSKLTQVLQDS-LGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
P+R SKLTQVL+DS +G +++T M I+P ++ T++TL++A+RV +
Sbjct: 352 PFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 402
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 159/291 (54%), Gaps = 19/291 (6%)
Query: 414 FLFNKVFAPNVSQEQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEE- 471
F F+ F S E +Y T +PLV+++ +G FAYGQTGSGKT+TM G DL+ +
Sbjct: 51 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG-DLSGKSQ 109
Query: 472 --TWGVNYRALRDLFQISNT-RGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRL-DIRN 527
+ G+ A RD+F + N R + EV V EIYN +V DLL R L D R
Sbjct: 110 NASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQ 169
Query: 528 TAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRE 587
Q GL VT +DVI+++ +G R G T N SSRSH+ +
Sbjct: 170 QVQVVGLQE-----YLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQIL----- 219
Query: 588 LVTGSILKGCLHLVDLAGSER-VDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHI 646
L T L G LVDLAG+ER D S A + E IN+SL AL + I AL Q AH
Sbjct: 220 LRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT 279
Query: 647 PYRNSKLTQVLQDS-LGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
P+R SKLTQVL+DS +G +++T M I+P ++ T++TL++A+RV +
Sbjct: 280 PFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 111/291 (38%), Positives = 158/291 (54%), Gaps = 19/291 (6%)
Query: 414 FLFNKVFAPNVSQEQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEE- 471
F F+ F S E +Y T +PLV+++ +G FAYGQTGSGKT+TM G DL+ +
Sbjct: 103 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG-DLSGKAQ 161
Query: 472 --TWGVNYRALRDLFQISNTRG-DMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRL-DIRN 527
+ G+ A RD+F + N + EV V EIYN ++ DLL R L D +
Sbjct: 162 NASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQ 221
Query: 528 TAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRE 587
Q GL V S +DVI+++ +G R G T N SSRSH+ + + +
Sbjct: 222 QVQVVGLQEH-----LVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG 276
Query: 588 LVTGSILKGCLHLVDLAGSER-VDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHI 646
+ G LVDLAG+ER D S A + E IN+SL AL + I AL Q AH
Sbjct: 277 RMHGK-----FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT 331
Query: 647 PYRNSKLTQVLQDS-LGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696
P+R SKLTQVL+DS +G +++T M I+P ++ T++TL++A+RV +
Sbjct: 332 PFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL 382
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 156 bits (394), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 158/282 (56%), Gaps = 18/282 (6%)
Query: 423 NVSQEQIY-VDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETW---GVNYR 478
+ SQ+ +Y + +V LDG+N I YGQTG+GKTYTM G A E + G+ R
Sbjct: 82 DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMG----ATENYKHRGILPR 137
Query: 479 ALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVS----DGSNRRLDIRNTAQANGL 534
AL+ +F++ R V V +EIYNE + DLL + S + I Q G+
Sbjct: 138 ALQQVFRMIEERPTH-AITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQ--GV 194
Query: 535 NVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLG--RELVTGS 592
+ S+ + ED L+ G+ NR + + +N+ SSRSH + T+++ R L
Sbjct: 195 FIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEK 254
Query: 593 ILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALA-QKSAHIPYRNS 651
+ ++LVDLAGSER+ KS + G+ LKEA +IN+SLS L I AL QK HIP+R
Sbjct: 255 YITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQC 314
Query: 652 KLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERV 693
KLT L+DSLGG+ ++ +I E + ET+S+L+FA R+
Sbjct: 315 KLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRM 356
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 146 bits (369), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 165/313 (52%), Gaps = 27/313 (8%)
Query: 398 IMVTNPFKQGKDARKM-----FLFNKVFAPNVSQEQIYVDT-QPLVRSVLD-GFNVCIFA 450
+MV P KQ D + F F+ F + E +Y T +PLV ++ + G C FA
Sbjct: 121 VMVHEP-KQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATC-FA 178
Query: 451 YGQTGSGKTYTMSGPDLTAEE---TWGVNYRALRDLF-QISNTRGDMIKYEVGVQMIEIY 506
YGQTGSGKT+TM G D + + + G+ A RD+F + ++ +V EIY
Sbjct: 179 YGQTGSGKTHTMGG-DFSGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIY 237
Query: 507 NEQVRDLLVSDGSNRRL-DIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGA 565
+ +V DLL R L D + Q GL + V EDV++L+ IG R G
Sbjct: 238 SGKVFDLLNRKTKLRVLEDGKQQVQVVGLQERE-----VKCVEDVLKLIDIGNSCRTSGQ 292
Query: 566 TALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAGSER-VDKSEAVGERLKEAQH 624
T+ N SSRSH+V + +L R+ L G L+DLAG+ER D S A + E
Sbjct: 293 TSANAHSSRSHAVFQI-ILRRK----GKLHGKFSLIDLAGNERGADTSSADRQTRLEGAE 347
Query: 625 INRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDS-LGGHAKTLMFVHINPEHNAIGET 683
IN+SL AL + I AL + H P+R SKLTQVL+DS +G +++T M I+P + T
Sbjct: 348 INKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENT 407
Query: 684 ISTLKFAERVSSI 696
++TL++A RV +
Sbjct: 408 LNTLRYANRVKEL 420
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 155/304 (50%), Gaps = 23/304 (7%)
Query: 403 PFKQGKDA---RKMFLFNKVFAPNVSQEQIY-VDTQPLVRSVLDGFNVCIFAYGQTGSGK 458
P+ GK + F F+ F +SQ+++Y PLV +L+GF AYGQTG+GK
Sbjct: 49 PWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGK 108
Query: 459 TYTM--SGPDLTAEETWGVNYRALRDLFQISNTRGDMIK--YEVGVQMIEIYNEQVRDLL 514
+Y+M + P E G+ RAL D+F+ R + K +V IEIYNE+ DLL
Sbjct: 109 SYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLL 168
Query: 515 VSDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSR 574
GS + + + +P+ S D+ ++ +G +NR V T +N SSR
Sbjct: 169 ---GSTPHMPMV------AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSR 219
Query: 575 SHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGD 634
SH+++T+HV + + +++VDLAGSE V ++ G +E +IN L ++
Sbjct: 220 SHAIVTIHVKSKTHHSR------MNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINK 273
Query: 635 VISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVS 694
V+ ++A IPYR+S LT VLQ SL + I+P + ET+STL+F
Sbjct: 274 VVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
Query: 695 SIEL 698
+ L
Sbjct: 334 KLRL 337
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 143 bits (361), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 155/304 (50%), Gaps = 23/304 (7%)
Query: 403 PFKQGKDA---RKMFLFNKVFAPNVSQEQIY-VDTQPLVRSVLDGFNVCIFAYGQTGSGK 458
P+ GK + F F+ F +SQ+++Y PLV +L+GF AYGQTG+GK
Sbjct: 49 PWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGK 108
Query: 459 TYTM--SGPDLTAEETWGVNYRALRDLFQISNTRGDMIK--YEVGVQMIEIYNEQVRDLL 514
+Y+M + P E G+ RAL D+F+ R + K +V IEIYNE+ DLL
Sbjct: 109 SYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLL 168
Query: 515 VSDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSR 574
GS + + + +P+ S D+ ++ +G +NR V T +N SSR
Sbjct: 169 ---GSTPHMPMV------AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSR 219
Query: 575 SHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGD 634
SH+++T+HV + + +++VDLAGSE V ++ G +E +IN L ++
Sbjct: 220 SHAIVTIHVKSKTHHSR------MNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINK 273
Query: 635 VISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVS 694
V+ ++A IPYR+S LT VLQ SL + I+P + ET+STL+F
Sbjct: 274 VVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
Query: 695 SIEL 698
+ L
Sbjct: 334 AAAL 337
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 157/290 (54%), Gaps = 17/290 (5%)
Query: 411 RKMFLFNKVFAPNVSQEQIYVDT-QPLVRSVLDGFNVC-IFAYGQTGSGKTYTMSGPDLT 468
R F+ +KVF V +Y +T +PL+ + + VC FAYGQTGSGKTYTM G
Sbjct: 49 RHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPY 108
Query: 469 AE-ETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRN 527
+ +T G+ A D+F N + + EIY ++ DLL R++
Sbjct: 109 GQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL----QKRKM---V 161
Query: 528 TAQANG---LNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVL 584
A NG + V D ++ V + E++I M G R +G + N+ SSRSH++L + +
Sbjct: 162 AALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDL- 220
Query: 585 GRELVTGSILKGCLHLVDLAGSER-VDKSEAVGERLKEAQHINRSLSALGDVISALAQKS 643
+++ + L G + +DLAGSER D + + +INRSL AL + I A+
Sbjct: 221 -KDINKNTSL-GKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK 278
Query: 644 AHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERV 693
HIP+R+S+LT+VL+D G +K++M +I+P + +T++TL+++ RV
Sbjct: 279 NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRV 328
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 138/263 (52%), Gaps = 52/263 (19%)
Query: 368 TIRVYCRVRP-----------FLPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLF 416
+I+V CR RP F+P + G+ TV IG QGK ++F
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIP-KFKGEETV-VIG------------QGKP----YVF 48
Query: 417 NKVFAPNVSQEQIY-VDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGV 475
++V PN +QEQ+Y + +V+ VL+G+N IFAYGQT SGKT+TM G L + G+
Sbjct: 49 DRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGK-LHDPQLMGI 107
Query: 476 NYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLN 535
R D+F + + +++ + V EIY +++RDLL D S L +
Sbjct: 108 IPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLL--DVSKTNLAVHE-------- 157
Query: 536 VPDASLIP---------VTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGR 586
D + +P V+S E+V++++ G+ NR V T +NE SSRSHS+ +++
Sbjct: 158 --DKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQE 215
Query: 587 ELVTGSILKGCLHLVDLAGSERV 609
+ T L G L+LVDLAGSE+V
Sbjct: 216 NVETEKKLSGKLYLVDLAGSEKV 238
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 622 AQHINRSLSALGDVISALAQKS-AHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAI 680
A++IN+SLSALG+VISALA+ + H+PYR+SK+T++LQDSL G+ +T + + +P
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 681 GETISTLKFAERVSSIE 697
ET STL F +R +I+
Sbjct: 61 AETKSTLMFGQRAKTIK 77
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 626 NRSLSALGDVISALAQKS-AHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETI 684
N+SLSALG+VISALA+ + H+PYR+SK+T++LQDSLGG+ +T + + +P ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 685 STLKFAERVSSIE 697
STL F +R +I+
Sbjct: 61 STLMFGQRAKTIK 73
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 15 EEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVA 74
EE + +L+NG++LC ++N++ PG+V K +P Q+ N+ +FL
Sbjct: 32 EEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDP-----------QTEADCINNINDFLKG 80
Query: 75 VKDMQLLTFEASDLEKGGSSSKVVDCILCLKGYYEWKQAGG 115
+Q+ F+ DL G + SKV+ +L + E + G
Sbjct: 81 CATLQVEIFDPDDLYSGVNFSKVLSTLLAVNKATESGPSSG 121
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 15/93 (16%)
Query: 17 EFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVK 76
+F+ L++G ILC ++NK+ PG+V K+ + EN+ NF+ A+
Sbjct: 37 DFQKGLKDGTILCTLMNKLQPGSVPKINR------------SMQNWHQLENLSNFIKAMV 84
Query: 77 DMQLL---TFEASDLEKGGSSSKVVDCILCLKG 106
+ FEA+DL + G+ ++V +L L G
Sbjct: 85 SYGMNPVDLFEANDLFESGNMTQVQVSLLALAG 117
>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin
Length = 108
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 15/92 (16%)
Query: 16 EEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAV 75
+ F L++G+ILC ++NK+ PG+V K V +P+ EN+ NFL A+
Sbjct: 22 DNFMDGLKDGVILCELINKLQPGSVQK-VNDPV-----------QNWHKLENIGNFLRAI 69
Query: 76 KDMQLL---TFEASDLEKGGSSSKVVDCILCL 104
K + FEA+DL + + ++V ++ L
Sbjct: 70 KHYGVKPHDIFEANDLFENTNHTQVQSTLIAL 101
>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1
Length = 136
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 15/90 (16%)
Query: 18 FRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKD 77
F L++G+ILC +NK+ PG+V K+ E +T+ Q EN+ NF+ A+
Sbjct: 38 FMDGLKDGIILCEFINKLQPGSVKKINE-------STQNWHQ-----LENIGNFIKAITK 85
Query: 78 MQLL---TFEASDLEKGGSSSKVVDCILCL 104
+ FEA+DL + + ++V +L L
Sbjct: 86 YGVKPHDIFEANDLFENTNHTQVQSTLLAL 115
>pdb|2L3G|A Chain A, Solution Nmr Structure Of Ch Domain Of Rho Guanine
Nucleotide Exchange Factor 7 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4495e
Length = 126
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 21 ALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAV-KDMQ 79
+L++G++LC +L ++ PG + KV P +S + N+R FL ++
Sbjct: 44 SLKDGVVLCRLLERLLPGTIEKVYPEP-----------RSESECLSNIREFLRGCGASLR 92
Query: 80 LLTFEASDLEKGGSSSKVVDCILCL 104
L TF+A+DL +G + +KV+ ++ L
Sbjct: 93 LETFDANDLYQGQNFNKVLSSLVTL 117
>pdb|1WYM|A Chain A, Solution Structure Of The Ch Domain Of Human Transgelin-2
Length = 155
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 12 EPSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNF 71
+P E F+ L++G +LC ++N + P + P+ +QA+ A + E + F
Sbjct: 38 QPGRENFQNWLKDGTVLCELINALYPEG-----QAPVKKIQAS----TMAFKQMEQISQF 88
Query: 72 LVAVKDMQLLT---FEASDLEKGGSSSKVVDCILCLKG 106
L A + + T F+ DL +G + + V ++ L G
Sbjct: 89 LQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGG 126
>pdb|1UJO|A Chain A, Solution Structure Of The Ch Domain From Mouse Trangelin
Length = 144
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 18 FRLALRNGLILCNVLNKVNPGAV--LKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAV 75
F++ L+NG+IL ++N + P +KV ENP V + E + FL A
Sbjct: 36 FQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMV----------FKQMEQVAQFLKAA 85
Query: 76 KDMQLL---TFEASDLEKGGSSSKVVDCILCL 104
+D ++ F+ DL +G + V ++ L
Sbjct: 86 EDYGVIKTDMFQTVDLYEGKDMAAVQRTLMAL 117
>pdb|3RMT|A Chain A, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|B Chain B, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|C Chain C, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|D Chain D, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
Length = 455
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 45 ENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLLTFEASDLEKGGSSSKVVDCILCL 104
E PIIAV AT+ + ++ I+ E ++ VK+ + S+L K G+S D + +
Sbjct: 319 EIPIIAVLATQASGRTVIKDAEELK-----VKETNRIDTVVSELTKLGASIHATDDGMII 373
Query: 105 KGYYEWKQAGGIGVWRYG 122
+G K GG+ V +G
Sbjct: 374 EGPTPLK--GGVTVSSHG 389
>pdb|2O2C|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From T. Brucei
Containing Glucose-6-Phosphate In The Active Site
pdb|2O2C|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From T. Brucei
Containing Glucose-6-Phosphate In The Active Site
pdb|2O2C|C Chain C, Crystal Structure Of Phosphoglucose Isomerase From T. Brucei
Containing Glucose-6-Phosphate In The Active Site
pdb|2O2D|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
Trypanosoma Brucei Complexed With Citrate
pdb|2O2D|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From
Trypanosoma Brucei Complexed With Citrate
pdb|2O2D|C Chain C, Crystal Structure Of Phosphoglucose Isomerase From
Trypanosoma Brucei Complexed With Citrate
Length = 613
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 25/135 (18%)
Query: 873 KADTTENQPISRVPFPARVPVNKSISATPVITSSIEINNSRVYIGSQEPAKQQDNVLDAL 932
+ +TTEN+P+ + R +N +Y+ ++ + VLD +
Sbjct: 137 RVNTTENRPVLHIALRNR-------------------SNRPIYVDGKDVMPAVNKVLDQM 177
Query: 933 SSLQKVSHRSKYPEHEDDQIRQALNIRQGGIRKSKPESKAKAKHQLPARFQKSDMGITLL 992
S + ++ H IR +NI GG + K F + D+ + +
Sbjct: 178 RSFSEKVRTGEWKGHTGKAIRHVVNIGIGGSDLGPVMATEALK-----PFSQRDLSLHFV 232
Query: 993 SDMDTGEKMDEARKS 1007
S++D G + E KS
Sbjct: 233 SNVD-GTHIAEVLKS 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,241,439
Number of Sequences: 62578
Number of extensions: 1148379
Number of successful extensions: 2893
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2600
Number of HSP's gapped (non-prelim): 88
length of query: 1097
length of database: 14,973,337
effective HSP length: 109
effective length of query: 988
effective length of database: 8,152,335
effective search space: 8054506980
effective search space used: 8054506980
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)