Query 001334
Match_columns 1097
No_of_seqs 610 out of 2805
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 22:06:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 4.7E-94 1E-98 858.4 39.9 423 297-723 241-667 (670)
2 KOG4280 Kinesin-like protein [ 100.0 2.4E-86 5.2E-91 771.2 26.6 357 366-727 4-368 (574)
3 KOG0243 Kinesin-like protein [ 100.0 6.3E-84 1.4E-88 777.0 29.6 354 366-722 48-418 (1041)
4 KOG0245 Kinesin-like protein [ 100.0 3.2E-83 6.9E-88 757.4 23.9 352 367-724 4-377 (1221)
5 PLN03188 kinesin-12 family pro 100.0 4.2E-80 9.2E-85 749.3 38.7 350 366-729 97-467 (1320)
6 cd01370 KISc_KIP3_like Kinesin 100.0 1.7E-79 3.8E-84 688.3 35.0 320 368-696 1-338 (338)
7 cd01373 KISc_KLP2_like Kinesin 100.0 1.7E-78 3.7E-83 680.1 35.7 320 367-696 1-337 (337)
8 KOG0240 Kinesin (SMY1 subfamil 100.0 8E-79 1.7E-83 693.0 25.4 364 366-738 6-378 (607)
9 KOG0242 Kinesin-like protein [ 100.0 4.2E-78 9.2E-83 723.3 28.0 352 366-726 5-363 (675)
10 cd01368 KISc_KIF23_like Kinesi 100.0 1.4E-76 3.1E-81 666.5 35.4 316 367-694 1-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1E-75 2.2E-80 661.7 37.3 329 367-702 1-355 (356)
12 cd01367 KISc_KIF2_like Kinesin 100.0 5.1E-75 1.1E-79 648.2 33.6 315 367-694 1-322 (322)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.7E-74 3.6E-79 650.4 37.6 335 367-704 2-351 (352)
14 cd01376 KISc_KID_like Kinesin 100.0 1.4E-74 3E-79 643.7 35.4 314 368-694 1-319 (319)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 1.9E-74 4.1E-79 646.0 36.5 326 367-696 1-333 (333)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 6.4E-74 1.4E-78 639.1 36.2 320 367-696 2-325 (325)
17 cd01366 KISc_C_terminal Kinesi 100.0 1E-73 2.2E-78 638.1 37.6 325 366-699 1-329 (329)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 5.8E-74 1.2E-78 642.9 35.6 321 368-697 2-341 (341)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 9.8E-74 2.1E-78 636.9 35.1 315 368-696 1-321 (321)
20 KOG0241 Kinesin-like protein [ 100.0 2.8E-74 6E-79 668.7 25.9 355 366-727 3-383 (1714)
21 cd01375 KISc_KIF9_like Kinesin 100.0 6.1E-73 1.3E-77 634.3 35.6 320 368-694 1-334 (334)
22 cd00106 KISc Kinesin motor dom 100.0 1.6E-69 3.5E-74 602.5 37.8 322 368-694 1-328 (328)
23 smart00129 KISc Kinesin motor, 100.0 6.8E-69 1.5E-73 599.9 37.0 326 368-702 1-334 (335)
24 PF00225 Kinesin: Kinesin moto 100.0 2.1E-69 4.6E-74 603.1 27.9 321 374-696 1-335 (335)
25 KOG0247 Kinesin-like protein [ 100.0 9.9E-65 2.1E-69 588.9 25.4 329 364-699 28-439 (809)
26 KOG0246 Kinesin-like protein [ 100.0 8.6E-64 1.9E-68 568.1 28.3 326 367-700 208-545 (676)
27 KOG0244 Kinesin-like protein [ 100.0 9.4E-65 2E-69 603.5 8.9 351 375-736 1-363 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.1E-59 2.4E-64 558.6 29.5 313 411-730 55-372 (568)
29 cd01363 Motor_domain Myosin an 100.0 4.2E-50 9.1E-55 415.6 18.6 176 429-675 8-186 (186)
30 KOG2046 Calponin [Cytoskeleton 99.8 7.6E-20 1.6E-24 189.3 7.7 97 13-121 43-142 (193)
31 COG5199 SCP1 Calponin [Cytoske 99.6 1.5E-16 3.3E-21 157.7 4.1 99 1-115 22-123 (178)
32 cd00014 CH Calponin homology d 99.4 1.7E-13 3.7E-18 128.5 5.7 85 13-108 20-106 (107)
33 KOG2996 Rho guanine nucleotide 99.4 2.8E-13 6.2E-18 156.2 6.0 98 13-121 28-131 (865)
34 smart00033 CH Calponin homolog 99.2 8.1E-12 1.8E-16 116.1 5.2 81 13-104 19-103 (103)
35 KOG2128 Ras GTPase-activating 99.2 7.8E-12 1.7E-16 156.4 5.2 96 1-112 51-149 (1401)
36 COG5261 IQG1 Protein involved 99.2 1E-11 2.3E-16 148.5 4.3 97 1-112 53-152 (1054)
37 KOG0532 Leucine-rich repeat (L 99.2 2.7E-11 5.8E-16 141.7 5.7 86 13-104 592-682 (722)
38 COG5059 KIP1 Kinesin-like prot 99.1 3.6E-13 7.9E-18 161.9 -12.4 296 328-640 264-566 (568)
39 PF00307 CH: Calponin homology 99.0 7.3E-11 1.6E-15 110.8 2.5 87 13-109 19-108 (108)
40 PF11971 CAMSAP_CH: CAMSAP CH 97.6 8.3E-05 1.8E-09 69.5 5.3 72 8-89 6-82 (85)
41 PF06395 CDC24: CDC24 Calponin 96.0 0.016 3.6E-07 54.8 6.5 80 15-104 3-88 (89)
42 KOG0046 Ca2+-binding actin-bun 96.0 0.0032 7E-08 74.5 2.1 81 5-94 138-221 (627)
43 COG0556 UvrB Helicase subunit 92.7 0.11 2.4E-06 62.7 4.3 95 412-511 3-101 (663)
44 PF00308 Bac_DnaA: Bacterial d 90.5 0.14 3.1E-06 55.4 2.0 50 413-464 4-53 (219)
45 KOG0239 Kinesin (KAR3 subfamil 89.3 0.15 3.3E-06 63.8 1.1 87 411-516 25-111 (670)
46 PRK03992 proteasome-activating 87.6 0.28 6E-06 57.7 1.8 17 446-462 166-182 (389)
47 PRK06893 DNA replication initi 87.0 0.38 8.3E-06 52.3 2.3 48 412-464 11-58 (229)
48 PRK14086 dnaA chromosomal repl 87.0 0.37 8E-06 59.8 2.4 52 411-464 282-333 (617)
49 COG2805 PilT Tfp pilus assembl 86.5 0.29 6.4E-06 55.9 1.1 30 434-463 114-143 (353)
50 PRK06620 hypothetical protein; 86.0 0.29 6.3E-06 53.0 0.8 49 412-463 11-62 (214)
51 PRK09039 hypothetical protein; 85.8 14 0.00031 43.2 14.3 28 209-236 38-65 (343)
52 PTZ00454 26S protease regulato 85.8 2.7 6E-05 49.9 8.7 50 413-462 141-196 (398)
53 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.3 7.1 0.00015 39.4 10.2 64 299-365 68-131 (132)
54 PRK12377 putative replication 85.3 0.47 1E-05 52.8 2.0 49 415-464 72-120 (248)
55 TIGR01242 26Sp45 26S proteasom 84.7 7.4 0.00016 45.2 11.4 18 446-463 157-174 (364)
56 PRK08084 DNA replication initi 84.4 0.55 1.2E-05 51.3 2.0 48 412-464 17-64 (235)
57 COG2804 PulE Type II secretory 84.0 0.4 8.6E-06 57.9 0.7 31 434-464 247-277 (500)
58 PRK14088 dnaA chromosomal repl 83.9 0.57 1.2E-05 56.1 2.0 51 411-464 99-149 (440)
59 PRK07952 DNA replication prote 83.7 0.66 1.4E-05 51.5 2.2 49 415-464 70-118 (244)
60 COG1484 DnaC DNA replication p 83.5 0.72 1.6E-05 51.4 2.4 49 414-464 76-124 (254)
61 TIGR00362 DnaA chromosomal rep 83.5 0.63 1.4E-05 54.7 2.1 52 411-464 104-155 (405)
62 PRK05642 DNA replication initi 83.4 0.76 1.6E-05 50.3 2.6 49 413-464 15-64 (234)
63 PRK08116 hypothetical protein; 82.6 0.66 1.4E-05 52.0 1.7 50 414-464 82-133 (268)
64 PRK14087 dnaA chromosomal repl 81.6 0.8 1.7E-05 55.0 2.1 50 413-464 111-160 (450)
65 PRK00149 dnaA chromosomal repl 81.6 0.79 1.7E-05 54.8 2.0 52 411-464 116-167 (450)
66 COG5069 SAC6 Ca2+-binding acti 81.5 2.3 5.1E-05 50.9 5.6 64 12-81 144-208 (612)
67 TIGR03420 DnaA_homol_Hda DnaA 80.3 1.1 2.4E-05 47.6 2.4 46 413-463 11-56 (226)
68 PRK09087 hypothetical protein; 79.9 0.94 2E-05 49.5 1.7 47 412-463 16-62 (226)
69 PRK06835 DNA replication prote 79.8 0.74 1.6E-05 53.3 0.9 37 427-464 166-202 (329)
70 PF04851 ResIII: Type III rest 79.5 1.1 2.3E-05 45.2 1.8 20 445-464 25-44 (184)
71 PRK08903 DnaA regulatory inact 79.0 1.4 2.9E-05 47.4 2.5 48 412-463 13-60 (227)
72 KOG2129 Uncharacterized conser 78.8 74 0.0016 38.2 16.2 20 356-375 327-346 (552)
73 PRK06526 transposase; Provisio 78.3 0.96 2.1E-05 50.4 1.2 40 420-464 77-117 (254)
74 COG0593 DnaA ATPase involved i 77.4 1.2 2.6E-05 53.0 1.7 51 412-464 82-132 (408)
75 TIGR02928 orc1/cdc6 family rep 76.6 1.5 3.2E-05 50.2 2.1 37 426-462 20-57 (365)
76 cd00046 DEXDc DEAD-like helica 76.6 0.93 2E-05 42.4 0.4 17 448-464 3-19 (144)
77 PRK08939 primosomal protein Dn 74.8 1.4 3.1E-05 50.4 1.4 51 414-464 124-175 (306)
78 PRK00411 cdc6 cell division co 74.4 1.9 4.2E-05 49.9 2.4 37 426-462 35-72 (394)
79 COG1474 CDC6 Cdc6-related prot 73.2 1.9 4.1E-05 50.6 1.9 28 435-462 31-59 (366)
80 PRK08727 hypothetical protein; 73.2 1.8 3.9E-05 47.3 1.6 45 413-464 15-60 (233)
81 PRK08181 transposase; Validate 72.9 2 4.2E-05 48.5 1.9 21 442-464 105-125 (269)
82 cd00009 AAA The AAA+ (ATPases 72.7 1.8 4E-05 40.9 1.4 19 444-462 18-36 (151)
83 PF13401 AAA_22: AAA domain; P 72.6 1.1 2.5E-05 43.1 -0.1 18 445-462 4-21 (131)
84 PF12846 AAA_10: AAA-like doma 70.6 1.5 3.3E-05 47.8 0.3 19 445-463 1-19 (304)
85 PF13191 AAA_16: AAA ATPase do 70.2 2.1 4.5E-05 43.5 1.2 34 429-462 8-41 (185)
86 PF01935 DUF87: Domain of unkn 70.0 1.6 3.4E-05 46.9 0.3 59 625-684 163-221 (229)
87 PF00270 DEAD: DEAD/DEAH box h 69.3 2 4.4E-05 42.9 0.9 27 436-464 7-33 (169)
88 smart00382 AAA ATPases associa 69.3 1.7 3.7E-05 40.4 0.3 19 446-464 3-21 (148)
89 TIGR02538 type_IV_pilB type IV 68.6 1.9 4.1E-05 53.4 0.5 29 436-464 307-335 (564)
90 PTZ00112 origin recognition co 68.3 1.9 4.1E-05 55.6 0.5 33 430-462 764-798 (1164)
91 TIGR02533 type_II_gspE general 68.1 2.2 4.7E-05 52.0 0.9 28 436-463 233-260 (486)
92 PLN03137 ATP-dependent DNA hel 68.1 28 0.0006 46.7 10.7 27 434-462 466-492 (1195)
93 cd01131 PilT Pilus retraction 67.8 1.9 4.2E-05 45.8 0.4 18 446-463 2-19 (198)
94 PRK10436 hypothetical protein; 67.7 2.1 4.5E-05 51.9 0.6 27 437-463 210-236 (462)
95 PRK12402 replication factor C 67.5 2.5 5.4E-05 47.6 1.2 42 415-463 13-54 (337)
96 TIGR01420 pilT_fam pilus retra 65.8 2.5 5.4E-05 49.0 0.8 27 437-463 114-140 (343)
97 PF13245 AAA_19: Part of AAA d 65.1 2.6 5.6E-05 38.7 0.6 26 437-463 3-28 (76)
98 COG1201 Lhr Lhr-like helicases 65.0 5.6 0.00012 51.3 3.6 25 436-462 30-54 (814)
99 PRK10884 SH3 domain-containing 64.8 31 0.00067 37.8 8.8 50 295-344 91-140 (206)
100 KOG0046 Ca2+-binding actin-bun 64.8 8.8 0.00019 46.8 5.0 79 8-93 399-480 (627)
101 PF05673 DUF815: Protein of un 64.5 2.1 4.6E-05 47.8 -0.1 130 414-579 24-155 (249)
102 PRK12422 chromosomal replicati 64.3 4.1 9E-05 49.1 2.3 52 411-464 105-160 (445)
103 PRK06921 hypothetical protein; 63.8 3.8 8.2E-05 46.0 1.7 37 428-464 97-136 (266)
104 TIGR02525 plasmid_TraJ plasmid 62.7 3.1 6.7E-05 49.1 0.8 20 444-463 148-167 (372)
105 PRK09183 transposase/IS protei 61.8 5.2 0.00011 44.7 2.4 41 419-464 80-121 (259)
106 PF01637 Arch_ATPase: Archaeal 61.8 2.7 5.9E-05 43.9 0.1 30 434-463 9-38 (234)
107 TIGR02524 dot_icm_DotB Dot/Icm 61.2 3.5 7.6E-05 48.3 0.9 20 444-463 133-152 (358)
108 PF13207 AAA_17: AAA domain; P 60.9 3.2 7E-05 39.6 0.5 16 447-462 1-16 (121)
109 cd01129 PulE-GspE PulE/GspE Th 60.5 3.8 8.1E-05 45.9 0.9 28 436-463 71-98 (264)
110 PF00448 SRP54: SRP54-type pro 60.1 3.1 6.7E-05 44.6 0.2 17 447-463 3-19 (196)
111 PF13479 AAA_24: AAA domain 60.0 3.9 8.5E-05 44.1 0.9 20 445-464 3-22 (213)
112 KOG0727 26S proteasome regulat 59.2 94 0.002 35.6 11.2 78 415-493 153-250 (408)
113 TIGR00631 uvrb excinuclease AB 59.2 10 0.00022 48.0 4.5 93 414-511 2-98 (655)
114 PF00437 T2SE: Type II/IV secr 59.1 3.1 6.6E-05 46.0 -0.1 28 434-462 117-144 (270)
115 TIGR03015 pepcterm_ATPase puta 58.6 5.2 0.00011 43.7 1.7 22 441-462 39-60 (269)
116 PF13604 AAA_30: AAA domain; P 58.3 3.7 8E-05 43.8 0.4 27 436-462 9-35 (196)
117 PRK13894 conjugal transfer ATP 58.1 4.1 8.9E-05 47.0 0.8 27 435-462 139-165 (319)
118 COG5008 PilU Tfp pilus assembl 58.0 6.1 0.00013 45.0 2.0 30 434-463 116-145 (375)
119 PF01695 IstB_IS21: IstB-like 56.7 6 0.00013 41.8 1.6 18 447-464 49-66 (178)
120 PF00063 Myosin_head: Myosin h 55.6 5 0.00011 50.7 1.0 35 428-462 67-102 (689)
121 PF00004 AAA: ATPase family as 55.4 4.4 9.5E-05 38.7 0.3 15 448-462 1-15 (132)
122 smart00053 DYNc Dynamin, GTPas 55.1 18 0.00038 40.4 5.0 53 544-609 86-138 (240)
123 TIGR02782 TrbB_P P-type conjug 53.8 5.3 0.00011 45.7 0.7 28 435-463 123-150 (299)
124 smart00487 DEXDc DEAD-like hel 53.2 6.5 0.00014 39.2 1.2 18 447-464 26-43 (201)
125 TIGR00635 ruvB Holliday juncti 52.7 6.9 0.00015 43.8 1.4 40 423-462 6-47 (305)
126 PF01580 FtsK_SpoIIIE: FtsK/Sp 52.6 4.5 9.8E-05 42.8 -0.1 17 447-463 40-56 (205)
127 PRK13833 conjugal transfer pro 52.0 6.1 0.00013 45.8 0.9 25 436-462 136-161 (323)
128 PTZ00424 helicase 45; Provisio 51.7 6.2 0.00013 45.8 0.8 27 435-463 57-83 (401)
129 KOG0335 ATP-dependent RNA heli 51.6 5.6 0.00012 48.3 0.4 66 437-508 105-189 (482)
130 PF13086 AAA_11: AAA domain; P 51.2 6.4 0.00014 41.1 0.8 27 436-463 9-35 (236)
131 PTZ00361 26 proteosome regulat 50.6 1.4E+02 0.003 36.4 11.8 16 447-462 219-234 (438)
132 PF06309 Torsin: Torsin; Inte 50.1 7.4 0.00016 39.6 1.0 15 448-462 56-70 (127)
133 PRK11776 ATP-dependent RNA hel 49.7 7.6 0.00017 46.4 1.2 25 436-462 34-58 (460)
134 PRK13342 recombination factor 49.3 8.2 0.00018 45.8 1.4 39 425-463 16-54 (413)
135 PF02562 PhoH: PhoH-like prote 48.9 8.8 0.00019 41.9 1.4 20 444-463 18-37 (205)
136 KOG0976 Rho/Rac1-interacting s 48.9 1.4E+02 0.0029 38.8 11.3 30 211-240 86-115 (1265)
137 PF05970 PIF1: PIF1-like helic 48.8 9.1 0.0002 44.8 1.6 37 423-462 3-39 (364)
138 cd00268 DEADc DEAD-box helicas 48.6 8.7 0.00019 40.0 1.3 24 437-462 30-53 (203)
139 PF13671 AAA_33: AAA domain; P 48.3 7.3 0.00016 38.2 0.6 15 448-462 2-16 (143)
140 PHA02544 44 clamp loader, smal 47.8 8.7 0.00019 43.3 1.2 22 442-463 39-61 (316)
141 PF04728 LPP: Lipoprotein leuc 47.8 1.3E+02 0.0029 26.8 8.1 50 299-348 5-54 (56)
142 cd01130 VirB11-like_ATPase Typ 47.6 8.4 0.00018 40.5 1.0 27 435-463 16-43 (186)
143 PF15290 Syntaphilin: Golgi-lo 47.4 99 0.0021 35.5 9.1 29 299-327 77-105 (305)
144 KOG0995 Centromere-associated 47.3 7E+02 0.015 31.6 17.3 22 210-231 418-439 (581)
145 TIGR03499 FlhF flagellar biosy 47.3 7.1 0.00015 44.1 0.4 18 447-464 196-213 (282)
146 PF00910 RNA_helicase: RNA hel 46.8 6 0.00013 38.0 -0.2 15 448-462 1-15 (107)
147 PRK13851 type IV secretion sys 46.8 7.1 0.00015 45.7 0.3 28 434-463 152-180 (344)
148 PRK12723 flagellar biosynthesi 46.5 7.2 0.00016 46.3 0.3 19 445-463 174-192 (388)
149 PF00580 UvrD-helicase: UvrD/R 46.2 6.4 0.00014 43.3 -0.1 21 444-464 12-32 (315)
150 PF13238 AAA_18: AAA domain; P 46.1 8.3 0.00018 36.6 0.6 15 448-462 1-15 (129)
151 PF04156 IncA: IncA protein; 46.0 1.3E+02 0.0028 31.7 9.6 25 300-324 126-150 (191)
152 PF04799 Fzo_mitofusin: fzo-li 45.8 88 0.0019 33.6 8.1 44 308-351 106-149 (171)
153 PRK11192 ATP-dependent RNA hel 45.6 9.4 0.0002 45.2 1.1 25 436-462 31-55 (434)
154 PF07334 IFP_35_N: Interferon- 45.4 65 0.0014 30.3 6.2 28 710-737 2-29 (76)
155 PF06414 Zeta_toxin: Zeta toxi 45.4 8.6 0.00019 40.8 0.7 20 443-462 13-32 (199)
156 cd01384 MYSc_type_XI Myosin mo 44.2 13 0.00027 47.4 1.9 35 428-462 70-105 (674)
157 cd01383 MYSc_type_VIII Myosin 44.1 14 0.00029 47.1 2.2 35 428-462 74-109 (677)
158 COG4962 CpaF Flp pilus assembl 44.1 9.5 0.00021 44.7 0.8 28 434-462 163-190 (355)
159 KOG0926 DEAH-box RNA helicase 44.0 15 0.00033 47.0 2.5 18 445-462 271-288 (1172)
160 PF03215 Rad17: Rad17 cell cyc 44.0 10 0.00023 46.6 1.2 31 432-462 30-62 (519)
161 smart00242 MYSc Myosin. Large 43.9 13 0.00027 47.3 1.9 36 427-462 73-109 (677)
162 PRK04837 ATP-dependent RNA hel 43.8 10 0.00022 44.8 1.1 25 436-462 38-62 (423)
163 PF07728 AAA_5: AAA domain (dy 43.8 7.7 0.00017 38.2 0.0 15 448-462 2-16 (139)
164 PF05496 RuvB_N: Holliday junc 43.8 18 0.00039 40.3 2.8 42 420-461 23-66 (233)
165 cd00124 MYSc Myosin motor doma 43.6 12 0.00027 47.4 1.7 36 427-462 67-103 (679)
166 cd01385 MYSc_type_IX Myosin mo 43.5 14 0.0003 47.1 2.2 35 428-462 76-111 (692)
167 COG4026 Uncharacterized protei 43.4 1.4E+02 0.003 33.4 9.2 16 308-323 132-147 (290)
168 cd01378 MYSc_type_I Myosin mot 43.2 14 0.0003 47.0 2.0 35 428-462 68-103 (674)
169 PRK10590 ATP-dependent RNA hel 43.0 12 0.00025 45.0 1.3 26 435-462 30-55 (456)
170 cd01387 MYSc_type_XV Myosin mo 42.9 14 0.00031 46.9 2.1 35 428-462 69-104 (677)
171 cd01381 MYSc_type_VII Myosin m 42.5 15 0.00033 46.6 2.3 35 428-462 68-103 (671)
172 KOG1962 B-cell receptor-associ 42.0 99 0.0021 34.4 8.0 26 338-363 185-210 (216)
173 PF07724 AAA_2: AAA domain (Cd 41.8 11 0.00023 39.8 0.7 17 446-462 4-20 (171)
174 TIGR00348 hsdR type I site-spe 41.5 14 0.0003 46.8 1.8 31 433-464 247-282 (667)
175 cd01382 MYSc_type_VI Myosin mo 41.0 14 0.00031 47.2 1.8 35 428-462 73-108 (717)
176 PRK13764 ATPase; Provisional 40.6 10 0.00023 47.4 0.5 18 446-463 258-275 (602)
177 PRK06547 hypothetical protein; 40.6 17 0.00037 38.3 2.0 27 436-462 6-32 (172)
178 PRK04195 replication factor C 40.4 16 0.00035 44.3 2.0 36 427-462 20-56 (482)
179 PF08317 Spc7: Spc7 kinetochor 40.3 2E+02 0.0042 33.5 10.6 12 356-367 282-293 (325)
180 PRK13900 type IV secretion sys 40.1 10 0.00022 44.1 0.2 28 434-462 150-177 (332)
181 cd01377 MYSc_type_II Myosin mo 39.7 17 0.00037 46.4 2.1 36 427-462 72-108 (693)
182 PF00038 Filament: Intermediat 39.4 6.2E+02 0.013 28.7 14.9 45 294-338 220-264 (312)
183 cd01380 MYSc_type_V Myosin mot 39.4 17 0.00038 46.3 2.1 35 428-462 68-103 (691)
184 TIGR00763 lon ATP-dependent pr 39.3 22 0.00047 45.9 3.0 16 447-462 349-364 (775)
185 KOG4825 Component of synaptic 39.2 1E+02 0.0022 37.5 8.0 31 779-809 258-288 (666)
186 PRK00080 ruvB Holliday junctio 39.0 14 0.0003 42.3 1.2 40 424-463 28-69 (328)
187 KOG0971 Microtubule-associated 39.0 5.6E+02 0.012 34.1 14.6 56 4-76 14-72 (1243)
188 PF08614 ATG16: Autophagy prot 38.8 1.8E+02 0.0039 31.3 9.3 67 295-364 114-183 (194)
189 KOG0989 Replication factor C, 38.4 18 0.00038 42.1 1.8 17 446-462 58-74 (346)
190 KOG3859 Septins (P-loop GTPase 38.3 33 0.00071 39.5 3.7 66 438-510 35-109 (406)
191 PRK14722 flhF flagellar biosyn 38.1 12 0.00026 44.3 0.5 18 446-463 138-155 (374)
192 PHA00729 NTP-binding motif con 37.8 19 0.00042 39.9 1.9 28 436-463 8-35 (226)
193 TIGR02881 spore_V_K stage V sp 37.2 13 0.00028 41.2 0.5 16 447-462 44-59 (261)
194 PRK00440 rfc replication facto 37.2 16 0.00034 40.9 1.2 20 443-462 36-55 (319)
195 PLN03025 replication factor C 37.0 16 0.00034 41.8 1.1 42 416-464 12-53 (319)
196 PRK01297 ATP-dependent RNA hel 36.6 15 0.00033 44.2 1.0 26 435-462 116-141 (475)
197 TIGR00614 recQ_fam ATP-depende 36.5 17 0.00037 43.8 1.4 26 435-462 18-43 (470)
198 KOG4593 Mitotic checkpoint pro 36.5 6.4E+02 0.014 32.6 14.5 58 306-363 253-316 (716)
199 KOG1514 Origin recognition com 36.5 37 0.00081 43.2 4.2 37 428-464 403-441 (767)
200 TIGR01389 recQ ATP-dependent D 36.3 16 0.00034 45.4 1.0 26 435-462 20-45 (591)
201 PRK10536 hypothetical protein; 36.1 17 0.00037 41.2 1.2 41 414-463 52-92 (262)
202 PRK06851 hypothetical protein; 35.6 1.3E+02 0.0027 36.0 8.2 27 436-462 205-231 (367)
203 PRK13341 recombination factor 35.4 17 0.00037 46.6 1.2 38 426-463 33-70 (725)
204 COG1219 ClpX ATP-dependent pro 35.4 16 0.00035 42.6 0.9 16 446-461 98-113 (408)
205 KOG2543 Origin recognition com 35.3 14 0.0003 44.0 0.3 38 447-508 32-69 (438)
206 PF00735 Septin: Septin; Inte 35.2 16 0.00036 41.4 0.9 21 442-462 1-21 (281)
207 PRK11448 hsdR type I restricti 35.2 14 0.0003 49.6 0.4 27 437-464 426-452 (1123)
208 PRK11889 flhF flagellar biosyn 35.2 23 0.00049 42.8 2.0 17 446-462 242-258 (436)
209 KOG0996 Structural maintenance 34.8 2.8E+02 0.0062 37.6 11.5 19 91-109 118-136 (1293)
210 PRK11634 ATP-dependent RNA hel 34.8 16 0.00036 45.9 0.9 30 913-943 490-519 (629)
211 PRK10884 SH3 domain-containing 34.7 1.5E+02 0.0033 32.6 8.0 25 297-321 100-124 (206)
212 PF05667 DUF812: Protein of un 34.4 5.3E+02 0.011 32.9 13.6 27 293-319 397-423 (594)
213 PRK00771 signal recognition pa 34.3 30 0.00066 41.9 3.0 20 444-463 94-113 (437)
214 PF05729 NACHT: NACHT domain 34.3 16 0.00035 36.1 0.6 17 447-463 2-18 (166)
215 KOG0728 26S proteasome regulat 34.3 3.1E+02 0.0068 31.6 10.4 15 447-461 183-197 (404)
216 cd01379 MYSc_type_III Myosin m 34.2 22 0.00048 45.1 1.9 35 428-462 68-103 (653)
217 PRK09841 cryptic autophosphory 34.0 1E+03 0.022 30.8 16.5 54 184-239 243-296 (726)
218 PF03961 DUF342: Protein of un 33.6 1.9E+02 0.0042 35.0 9.6 84 294-377 331-422 (451)
219 COG2256 MGS1 ATPase related to 33.4 21 0.00046 42.7 1.5 38 424-461 27-64 (436)
220 KOG0742 AAA+-type ATPase [Post 33.3 45 0.00096 40.3 4.0 44 447-492 386-443 (630)
221 cd01386 MYSc_type_XVIII Myosin 33.3 22 0.00048 45.9 1.7 35 428-462 68-103 (767)
222 PRK00131 aroK shikimate kinase 33.2 19 0.00042 36.2 1.0 17 446-462 5-21 (175)
223 cd01120 RecA-like_NTPases RecA 33.2 15 0.00033 35.9 0.2 16 448-463 2-17 (165)
224 PRK11637 AmiB activator; Provi 32.9 4.6E+02 0.01 31.5 12.5 14 572-585 404-417 (428)
225 PRK04537 ATP-dependent RNA hel 32.9 20 0.00044 44.6 1.2 25 436-462 39-63 (572)
226 TIGR01618 phage_P_loop phage n 32.4 17 0.00036 40.1 0.4 20 445-464 12-31 (220)
227 TIGR01069 mutS2 MutS2 family p 32.2 2.4E+02 0.0052 36.8 10.5 15 96-110 268-282 (771)
228 PRK05703 flhF flagellar biosyn 32.0 17 0.00038 43.6 0.5 17 447-463 223-239 (424)
229 COG1223 Predicted ATPase (AAA+ 31.5 19 0.0004 41.2 0.6 17 446-462 152-168 (368)
230 PRK11331 5-methylcytosine-spec 31.5 23 0.0005 43.1 1.4 36 661-700 320-357 (459)
231 PLN00206 DEAD-box ATP-dependen 31.4 26 0.00057 42.9 1.9 25 436-462 151-175 (518)
232 cd01850 CDC_Septin CDC/Septin. 31.3 21 0.00045 40.4 0.9 21 442-462 1-21 (276)
233 PHA02653 RNA helicase NPH-II; 31.3 27 0.00059 44.5 2.0 24 436-461 172-195 (675)
234 COG4942 Membrane-bound metallo 31.1 4.5E+02 0.0097 32.1 11.7 8 330-337 197-204 (420)
235 PRK15396 murein lipoprotein; P 31.1 2.2E+02 0.0047 27.0 7.3 37 299-335 27-63 (78)
236 PF06048 DUF927: Domain of unk 30.7 25 0.00053 39.9 1.4 28 434-462 183-210 (286)
237 KOG4603 TBP-1 interacting prot 30.7 4.4E+02 0.0095 28.6 10.2 18 347-364 163-180 (201)
238 PF13851 GAS: Growth-arrest sp 30.5 4.5E+02 0.0098 28.7 10.8 17 345-361 113-129 (201)
239 TIGR00602 rad24 checkpoint pro 30.2 23 0.0005 44.8 1.1 39 425-463 88-128 (637)
240 cd01126 TraG_VirD4 The TraG/Tr 30.2 27 0.00059 40.9 1.6 17 448-464 2-18 (384)
241 PF07106 TBPIP: Tat binding pr 30.0 2.7E+02 0.006 29.1 8.9 25 299-323 81-105 (169)
242 KOG0354 DEAD-box like helicase 29.9 30 0.00065 44.3 2.0 42 418-462 45-93 (746)
243 cd02021 GntK Gluconate kinase 29.7 22 0.00048 35.4 0.7 15 448-462 2-16 (150)
244 COG1222 RPT1 ATP-dependent 26S 29.7 31 0.00068 40.9 2.0 46 447-493 187-246 (406)
245 PHA00276 phage lambda Rz-like 29.7 2.3E+02 0.005 29.7 7.8 15 366-380 81-95 (144)
246 cd01127 TrwB Bacterial conjuga 29.6 19 0.00041 42.8 0.3 17 446-462 43-59 (410)
247 PRK10416 signal recognition pa 29.4 36 0.00078 39.4 2.4 18 446-463 115-132 (318)
248 TIGR01359 UMP_CMP_kin_fam UMP- 29.3 23 0.00051 36.4 0.8 14 448-461 2-15 (183)
249 PRK14974 cell division protein 29.3 36 0.00077 39.9 2.4 19 444-462 139-157 (336)
250 PRK06995 flhF flagellar biosyn 29.3 20 0.00044 43.9 0.4 18 446-463 257-274 (484)
251 PF12775 AAA_7: P-loop contain 29.2 21 0.00045 40.4 0.4 27 436-463 25-51 (272)
252 COG1419 FlhF Flagellar GTP-bin 29.1 31 0.00067 41.4 1.8 18 445-462 203-220 (407)
253 PF13173 AAA_14: AAA domain 28.6 22 0.00047 35.0 0.4 16 447-462 4-19 (128)
254 smart00763 AAA_PrkA PrkA AAA d 28.5 29 0.00063 41.1 1.5 65 416-485 49-142 (361)
255 TIGR03158 cas3_cyano CRISPR-as 28.5 27 0.00059 40.7 1.3 25 438-462 7-31 (357)
256 PRK07261 topology modulation p 28.4 25 0.00053 36.7 0.8 15 448-462 3-17 (171)
257 TIGR02237 recomb_radB DNA repa 28.3 31 0.00066 36.5 1.5 18 445-462 12-29 (209)
258 PF13476 AAA_23: AAA domain; P 28.3 22 0.00048 36.4 0.4 17 446-462 20-36 (202)
259 PF10146 zf-C4H2: Zinc finger- 28.2 2.6E+02 0.0056 31.4 8.6 11 329-339 60-70 (230)
260 cd01123 Rad51_DMC1_radA Rad51_ 28.2 36 0.00077 36.6 2.0 28 435-462 6-36 (235)
261 PRK14723 flhF flagellar biosyn 28.1 37 0.00081 43.8 2.4 18 446-463 186-203 (767)
262 PF04111 APG6: Autophagy prote 27.9 2.7E+02 0.0058 32.5 9.1 20 211-230 3-22 (314)
263 COG1125 OpuBA ABC-type proline 27.9 22 0.00048 40.5 0.4 58 635-700 146-213 (309)
264 KOG0736 Peroxisome assembly fa 27.8 59 0.0013 42.0 3.9 22 470-491 784-805 (953)
265 PRK11637 AmiB activator; Provi 27.6 5.8E+02 0.013 30.7 12.1 6 459-464 371-376 (428)
266 PF06818 Fez1: Fez1; InterPro 27.6 4.7E+02 0.01 28.9 10.2 64 297-363 138-201 (202)
267 PRK13729 conjugal transfer pil 27.5 1.8E+02 0.004 35.8 7.8 45 297-341 69-116 (475)
268 PTZ00014 myosin-A; Provisional 27.4 36 0.00079 44.3 2.2 34 429-462 166-200 (821)
269 TIGR02746 TraC-F-type type-IV 27.4 22 0.00047 45.6 0.2 16 447-462 432-447 (797)
270 PRK10917 ATP-dependent DNA hel 27.3 38 0.00083 43.1 2.4 41 420-463 260-300 (681)
271 PRK06696 uridine kinase; Valid 27.3 47 0.001 36.0 2.7 21 442-462 19-39 (223)
272 PRK11057 ATP-dependent DNA hel 27.2 33 0.00071 43.0 1.7 25 436-462 33-57 (607)
273 PRK11664 ATP-dependent RNA hel 27.1 30 0.00064 45.1 1.3 32 429-462 6-37 (812)
274 KOG0517 Beta-spectrin [Cytoske 27.0 88 0.0019 43.8 5.4 52 14-77 67-118 (2473)
275 PHA02562 46 endonuclease subun 26.9 4.5E+02 0.0097 32.3 11.3 148 215-369 179-346 (562)
276 TIGR01241 FtsH_fam ATP-depende 26.9 28 0.0006 42.4 1.0 50 413-462 51-105 (495)
277 cd01428 ADK Adenylate kinase ( 26.9 27 0.00059 36.1 0.8 15 448-462 2-16 (194)
278 PRK04328 hypothetical protein; 26.8 38 0.00082 37.6 1.9 26 435-460 10-38 (249)
279 TIGR02640 gas_vesic_GvpN gas v 26.8 33 0.00072 38.2 1.5 25 436-462 14-38 (262)
280 cd02020 CMPK Cytidine monophos 26.8 28 0.0006 34.1 0.8 15 448-462 2-16 (147)
281 PRK10865 protein disaggregatio 26.7 35 0.00075 44.7 1.9 45 414-462 565-615 (857)
282 TIGR02322 phosphon_PhnN phosph 26.7 24 0.00052 36.3 0.4 16 447-462 3-18 (179)
283 cd00464 SK Shikimate kinase (S 26.6 28 0.0006 34.6 0.8 16 447-462 1-16 (154)
284 PHA02244 ATPase-like protein 26.6 41 0.00089 40.2 2.2 21 440-462 116-136 (383)
285 TIGR02788 VirB11 P-type DNA tr 26.5 29 0.00063 39.7 1.0 30 433-463 133-162 (308)
286 TIGR01313 therm_gnt_kin carboh 26.5 24 0.00052 35.8 0.3 14 448-461 1-14 (163)
287 PRK00409 recombination and DNA 26.4 3.3E+02 0.0072 35.7 10.4 16 96-111 273-288 (782)
288 COG3883 Uncharacterized protei 26.4 4.9E+02 0.011 29.9 10.4 14 329-342 80-93 (265)
289 PRK13767 ATP-dependent helicas 26.2 30 0.00064 45.4 1.1 24 437-462 41-64 (876)
290 PF01166 TSC22: TSC-22/dip/bun 26.1 1.5E+02 0.0032 26.7 5.0 34 708-741 14-47 (59)
291 KOG0953 Mitochondrial RNA heli 26.0 30 0.00066 42.9 1.0 42 448-489 194-237 (700)
292 PF07139 DUF1387: Protein of u 25.9 5.9E+02 0.013 29.8 11.0 18 213-230 153-170 (302)
293 TIGR02902 spore_lonB ATP-depen 25.8 34 0.00073 42.3 1.5 41 415-462 63-103 (531)
294 PF10236 DAP3: Mitochondrial r 25.8 42 0.00091 38.6 2.1 24 440-463 18-41 (309)
295 TIGR03817 DECH_helic helicase/ 25.7 31 0.00066 44.4 1.1 25 436-462 44-68 (742)
296 PRK08118 topology modulation p 25.7 29 0.00064 36.1 0.8 14 448-461 4-17 (167)
297 PF13555 AAA_29: P-loop contai 25.6 25 0.00054 31.6 0.2 15 448-462 26-40 (62)
298 PRK12724 flagellar biosynthesi 25.6 44 0.00096 40.5 2.3 17 446-462 224-240 (432)
299 PTZ00110 helicase; Provisional 25.5 31 0.00068 42.6 1.1 24 437-462 161-184 (545)
300 TIGR00376 DNA helicase, putati 25.5 31 0.00068 43.6 1.1 17 448-464 176-192 (637)
301 cd01983 Fer4_NifH The Fer4_Nif 25.5 28 0.0006 30.9 0.5 16 448-463 2-17 (99)
302 TIGR01817 nifA Nif-specific re 25.5 33 0.00071 42.2 1.2 44 414-462 193-236 (534)
303 PF02456 Adeno_IVa2: Adenoviru 25.3 32 0.0007 40.1 1.1 15 449-463 91-105 (369)
304 CHL00081 chlI Mg-protoporyphyr 25.3 23 0.00049 41.7 -0.1 45 412-463 12-56 (350)
305 COG0630 VirB11 Type IV secreto 25.2 25 0.00054 40.6 0.2 18 446-463 144-161 (312)
306 PRK08233 hypothetical protein; 25.1 30 0.00066 35.3 0.8 15 448-462 6-20 (182)
307 PF08581 Tup_N: Tup N-terminal 25.1 3.5E+02 0.0076 25.6 7.6 45 294-338 29-73 (79)
308 PRK06067 flagellar accessory p 24.8 42 0.00092 36.3 1.8 29 434-462 11-42 (234)
309 TIGR00064 ftsY signal recognit 24.8 31 0.00066 39.0 0.8 17 447-463 74-90 (272)
310 TIGR03819 heli_sec_ATPase heli 24.7 33 0.00072 40.1 1.0 29 434-463 168-196 (340)
311 PRK11034 clpA ATP-dependent Cl 24.7 44 0.00095 43.2 2.2 37 426-462 463-505 (758)
312 PF04156 IncA: IncA protein; 24.5 5.6E+02 0.012 27.0 10.1 20 298-317 131-150 (191)
313 KOG0804 Cytoplasmic Zn-finger 24.4 3.3E+02 0.0071 33.4 8.9 6 117-122 278-283 (493)
314 TIGR03744 traC_PFL_4706 conjug 24.4 26 0.00057 45.9 0.2 18 445-462 475-492 (893)
315 PF00485 PRK: Phosphoribulokin 24.2 28 0.0006 36.7 0.3 15 448-462 2-16 (194)
316 PRK12726 flagellar biosynthesi 23.9 30 0.00064 41.5 0.5 19 446-464 207-225 (407)
317 PRK10820 DNA-binding transcrip 23.8 34 0.00075 42.1 1.0 46 412-462 199-244 (520)
318 PRK05580 primosome assembly pr 23.8 37 0.00081 43.2 1.4 37 420-462 143-179 (679)
319 cd02023 UMPK Uridine monophosp 23.7 28 0.00061 36.6 0.2 15 448-462 2-16 (198)
320 PRK06217 hypothetical protein; 23.7 33 0.00072 35.8 0.7 14 448-461 4-17 (183)
321 PRK14721 flhF flagellar biosyn 23.7 30 0.00064 41.8 0.4 17 446-462 192-208 (420)
322 PF06005 DUF904: Protein of un 23.7 5.6E+02 0.012 23.8 8.5 25 296-320 17-41 (72)
323 PF15372 DUF4600: Domain of un 23.5 5.8E+02 0.013 26.4 9.3 49 327-375 63-115 (129)
324 PF15066 CAGE1: Cancer-associa 23.4 7.4E+02 0.016 30.7 11.5 28 294-321 394-421 (527)
325 cd01853 Toc34_like Toc34-like 23.1 37 0.00079 38.0 1.0 41 420-462 8-48 (249)
326 PF15070 GOLGA2L5: Putative go 23.1 4.7E+02 0.01 33.5 10.5 141 215-362 113-260 (617)
327 PF10412 TrwB_AAD_bind: Type I 23.1 27 0.00059 41.3 -0.1 16 447-462 17-32 (386)
328 PF07798 DUF1640: Protein of u 23.0 3.4E+02 0.0073 28.9 8.1 30 307-336 76-105 (177)
329 TIGR02639 ClpA ATP-dependent C 23.0 47 0.001 42.6 2.0 37 426-462 459-501 (731)
330 TIGR02688 conserved hypothetic 23.0 50 0.0011 40.2 2.0 51 436-489 202-252 (449)
331 COG0606 Predicted ATPase with 22.8 33 0.00072 41.9 0.6 27 435-463 190-216 (490)
332 COG2433 Uncharacterized conser 22.7 4.7E+02 0.01 33.3 10.1 31 291-321 437-467 (652)
333 COG3883 Uncharacterized protei 22.7 6.7E+02 0.014 28.9 10.6 62 299-360 40-104 (265)
334 CHL00181 cbbX CbbX; Provisiona 22.7 35 0.00076 38.8 0.7 15 448-462 62-76 (287)
335 TIGR02173 cyt_kin_arch cytidyl 22.6 36 0.00079 34.3 0.8 16 447-462 2-17 (171)
336 PF05700 BCAS2: Breast carcino 22.4 4.4E+02 0.0095 29.1 9.0 48 293-340 139-186 (221)
337 PRK14531 adenylate kinase; Pro 22.4 38 0.00081 35.5 0.8 15 447-461 4-18 (183)
338 PRK11519 tyrosine kinase; Prov 22.4 1.8E+03 0.038 28.7 17.5 21 443-463 525-545 (719)
339 TIGR02880 cbbX_cfxQ probable R 22.3 33 0.00071 38.9 0.4 15 448-462 61-75 (284)
340 PRK01172 ski2-like helicase; P 22.2 45 0.00098 42.1 1.6 22 438-461 32-53 (674)
341 TIGR01425 SRP54_euk signal rec 22.2 47 0.001 40.2 1.7 20 443-462 98-117 (429)
342 KOG0330 ATP-dependent RNA heli 22.1 49 0.0011 39.7 1.7 26 435-462 90-115 (476)
343 COG3074 Uncharacterized protei 22.1 6.6E+02 0.014 23.6 9.2 51 297-351 18-68 (79)
344 PF04111 APG6: Autophagy prote 22.0 7.2E+02 0.016 29.0 11.1 10 456-465 215-224 (314)
345 COG5019 CDC3 Septin family pro 22.0 48 0.001 39.3 1.7 20 442-461 20-39 (373)
346 cd01124 KaiC KaiC is a circadi 21.9 41 0.00089 34.5 1.0 15 448-462 2-16 (187)
347 cd00820 PEPCK_HprK Phosphoenol 21.8 36 0.00079 33.6 0.5 16 447-462 17-32 (107)
348 CHL00176 ftsH cell division pr 21.8 43 0.00093 42.5 1.3 46 413-462 179-233 (638)
349 TIGR02397 dnaX_nterm DNA polym 21.8 56 0.0012 37.3 2.1 35 425-462 18-53 (355)
350 TIGR00231 small_GTP small GTP- 21.7 33 0.00071 32.6 0.2 15 448-462 4-18 (161)
351 cd02025 PanK Pantothenate kina 21.6 26 0.00056 38.3 -0.6 12 451-462 5-16 (220)
352 PRK14532 adenylate kinase; Pro 21.5 42 0.00092 34.9 1.0 15 447-461 2-16 (188)
353 PHA01747 putative ATP-dependen 21.5 44 0.00096 39.9 1.2 31 433-463 178-208 (425)
354 TIGR01360 aden_kin_iso1 adenyl 21.4 43 0.00093 34.4 1.0 16 447-462 5-20 (188)
355 TIGR00929 VirB4_CagE type IV s 21.3 29 0.00062 44.4 -0.4 18 445-462 434-451 (785)
356 cd01394 radB RadB. The archaea 21.2 55 0.0012 34.9 1.8 28 435-462 6-36 (218)
357 PRK09361 radB DNA repair and r 21.1 61 0.0013 34.8 2.1 29 434-462 9-40 (225)
358 KOG1803 DNA helicase [Replicat 21.0 39 0.00084 42.4 0.7 17 447-463 203-219 (649)
359 PF02534 T4SS-DNA_transf: Type 21.0 61 0.0013 38.8 2.3 18 446-463 45-62 (469)
360 PF06305 DUF1049: Protein of u 21.0 97 0.0021 27.3 3.0 26 710-735 43-68 (68)
361 PF06294 DUF1042: Domain of Un 20.9 1E+02 0.0022 32.4 3.6 81 13-104 12-98 (158)
362 TIGR03345 VI_ClpV1 type VI sec 20.7 61 0.0013 42.5 2.3 17 446-462 597-613 (852)
363 TIGR00643 recG ATP-dependent D 20.6 60 0.0013 40.9 2.2 40 420-462 234-273 (630)
364 PRK04040 adenylate kinase; Pro 20.6 42 0.00092 35.8 0.8 16 447-462 4-19 (188)
365 PRK06762 hypothetical protein; 20.6 45 0.00097 33.9 0.9 15 447-461 4-18 (166)
366 PF08477 Miro: Miro-like prote 20.6 45 0.00098 31.4 0.9 15 448-462 2-16 (119)
367 TIGR02903 spore_lon_C ATP-depe 20.5 54 0.0012 41.4 1.8 27 436-462 166-192 (615)
368 PF06785 UPF0242: Uncharacteri 20.5 4.9E+02 0.011 30.9 9.0 32 295-326 132-163 (401)
369 PRK00300 gmk guanylate kinase; 20.4 39 0.00084 35.6 0.4 17 446-462 6-22 (205)
370 KOG0971 Microtubule-associated 20.1 6.4E+02 0.014 33.6 10.6 22 299-320 334-355 (1243)
371 PLN00020 ribulose bisphosphate 20.1 63 0.0014 38.8 2.1 79 411-489 109-205 (413)
372 TIGR02169 SMC_prok_A chromosom 20.1 7.1E+02 0.015 33.2 11.9 13 542-554 624-636 (1164)
373 PF11559 ADIP: Afadin- and alp 20.0 9.5E+02 0.021 24.6 10.6 37 303-339 107-143 (151)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=4.7e-94 Score=858.36 Aligned_cols=423 Identities=49% Similarity=0.692 Sum_probs=392.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhhcCCCCEEEEE
Q 001334 297 ELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQKVL---EENRVLYNQVQDLKGTIRVYC 373 (1097)
Q Consensus 297 ~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l---~err~L~N~lqelKGnIRV~c 373 (1097)
+-++.++.++..|+..+..++.++..+...+++.+......+..|+.....|.... .+||+|||+++||||||||||
T Consensus 241 ~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~C 320 (670)
T KOG0239|consen 241 KKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFC 320 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEE
Confidence 33889999999999999999999999999999999999999999988888888777 889999999999999999999
Q ss_pred EeCCCCCCCCCC-CCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeec
Q 001334 374 RVRPFLPGQSNG-QSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYG 452 (1097)
Q Consensus 374 RVRP~~~~E~~~-~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYG 452 (1097)
||||+++++... ...+...++.+.+.+..|....+...+.|.||+||+|.++|++||.++.|+|++||||||+||||||
T Consensus 321 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYG 400 (670)
T KOG0239|consen 321 RVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYG 400 (670)
T ss_pred EecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEec
Confidence 999999988764 4555555555678888887766666668999999999999999999999999999999999999999
Q ss_pred cCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCCcccceecccCCC
Q 001334 453 QTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQAN 532 (1097)
Q Consensus 453 QTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~l~Ir~~~~~~ 532 (1097)
||||||||||.|+ .++++|||||++++||..+.....+|.|.+.+||+|||||.|+|||.++....++.|+.+.. +
T Consensus 401 QTGSGKTyTM~G~---~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~-~ 476 (670)
T KOG0239|consen 401 QTGSGKTYTMSGP---TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAE-G 476 (670)
T ss_pred ccCCCccccccCC---CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCC-C
Confidence 9999999999996 35788999999999999999888899999999999999999999998765567888998875 5
Q ss_pred CeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeEEEeecCCCcccccc
Q 001334 533 GLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKS 612 (1097)
Q Consensus 533 G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL~LVDLAGSER~~ks 612 (1097)
+++|++++.+.|.+.+++..+|+.|.+||++++|.+|++|||||+||+|+|.+.+..++....|+|+|||||||||++++
T Consensus 477 ~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s 556 (670)
T KOG0239|consen 477 NLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKS 556 (670)
T ss_pred ceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcHHHHHHHHHHHHH
Q 001334 613 EAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAER 692 (1097)
Q Consensus 613 ~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsR 692 (1097)
+++|+|++|+++||+||++||+||.||+++..||||||||||+||||||||++||+|||+|||...++.||+++|+||+|
T Consensus 557 ~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~r 636 (670)
T KOG0239|consen 557 GVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATR 636 (670)
T ss_pred CCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccccchhHHHHHHHHHHHHHHH
Q 001334 693 VSSIELGAARSNKESGEIRELREEISNLKQT 723 (1097)
Q Consensus 693 ak~I~~~~~~~~~~~~~i~eLreEI~~LK~~ 723 (1097)
|+.+++++++..........+...+..++..
T Consensus 637 v~~~~lG~a~~~~~~~~~~~~~~~~~~~~~~ 667 (670)
T KOG0239|consen 637 VRSVELGSARKQVSTSDDVSLKRFGQLEKLS 667 (670)
T ss_pred hhceecccccccccccchhhhhhhhhhhhhh
Confidence 9999999999988888887777776666544
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-86 Score=771.20 Aligned_cols=357 Identities=44% Similarity=0.668 Sum_probs=320.5
Q ss_pred CCCEEEEEEeCCCCCCCCCC--CCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHhhhcC
Q 001334 366 KGTIRVYCRVRPFLPGQSNG--QSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSVLD 442 (1097)
Q Consensus 366 KGnIRV~cRVRP~~~~E~~~--~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~svLd 442 (1097)
.-+|+|++||||+...+... ...+.+....+.+.+.++..+.....+.|+||.||+++++|++||.. +.|+|++||+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 35799999999998765432 34455555666777777765555567889999999999999999988 5999999999
Q ss_pred CcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCCcc
Q 001334 443 GFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRR 522 (1097)
Q Consensus 443 GyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~ 522 (1097)
|||+||||||||||||||||.|++ .+..|||||++.+||..+....+...|.|+|||+|||||+|+|||.+... +.
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~---~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~-~~ 159 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPD---PELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNP-KG 159 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCC---hhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCc-CC
Confidence 999999999999999999999983 67899999999999999998877668999999999999999999987643 67
Q ss_pred cceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeecc---CceeeeeEE
Q 001334 523 LDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVT---GSILKGCLH 599 (1097)
Q Consensus 523 l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~---g~~~~skL~ 599 (1097)
+.+++++ ..|+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++..... .....|+|+
T Consensus 160 l~lre~p-~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rln 238 (574)
T KOG4280|consen 160 LELREDP-KCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLN 238 (574)
T ss_pred ceeeEcC-CCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceee
Confidence 8999988 489999999999999999999999999999999999999999999999999999833222 245789999
Q ss_pred EeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCC-CccCCCCchhhhhhhccCCCceeeEEEecCCCCC
Q 001334 600 LVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSA-HIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHN 678 (1097)
Q Consensus 600 LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~-hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~ 678 (1097)
|||||||||..++++.|+|++||.+||+||++||+||.||++... ||||||||||+||||||||||||+|||||+|+..
T Consensus 239 lvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~ 318 (574)
T KOG4280|consen 239 LVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSD 318 (574)
T ss_pred eeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhh
Confidence 999999999999999999999999999999999999999999776 9999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhccccccccccccch-hHHHHHHHHHHHHHHHHHHH
Q 001334 679 AIGETISTLKFAERVSSIELGAARSNKES-GEIRELREEISNLKQTLEKK 727 (1097)
Q Consensus 679 ~~~ETLsTLrFAsRak~I~~~~~~~~~~~-~~i~eLreEI~~LK~~L~~~ 727 (1097)
+++||++||+||+|++.|++.+..+.... ..+.+|++||+.||.+|+..
T Consensus 319 ~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~~ 368 (574)
T KOG4280|consen 319 NYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDPG 368 (574)
T ss_pred hhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999988877665 78888888888888777653
No 3
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.3e-84 Score=776.97 Aligned_cols=354 Identities=40% Similarity=0.623 Sum_probs=308.4
Q ss_pred CCCEEEEEEeCCCCCCCCCCCCceEEecCC--CcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHhhhcC
Q 001334 366 KGTIRVYCRVRPFLPGQSNGQSTVDYIGEN--GNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSVLD 442 (1097)
Q Consensus 366 KGnIRV~cRVRP~~~~E~~~~s~v~~~~~~--~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~svLd 442 (1097)
--||+|++||||+...|....+.+.+...+ ..|.|... -.++...|.|+||+||||.+.|++||.. +.|+|..|+.
T Consensus 48 ~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~-~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~ 126 (1041)
T KOG0243|consen 48 EVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQT-IASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLE 126 (1041)
T ss_pred CCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecc-cccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhc
Confidence 468999999999999887666655444333 34666554 2233357899999999999999999988 6999999999
Q ss_pred CcceeEEeeccCCCCcceeecCCC----CCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCC
Q 001334 443 GFNVCIFAYGQTGSGKTYTMSGPD----LTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDG 518 (1097)
Q Consensus 443 GyNvcIfAYGQTGSGKTyTM~G~~----~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~ 518 (1097)
|||||||||||||+||||||+|.. +..+...||||||+.+||..+...+ ..|.|.|||+|+|||.|+|||+++.
T Consensus 127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~--~EYsvKVSfLELYNEEl~DLLa~~~ 204 (1041)
T KOG0243|consen 127 GYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG--AEYSVKVSFLELYNEELTDLLASED 204 (1041)
T ss_pred cCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC--CeEEEEEEehhhhhHHHHHhcCCcc
Confidence 999999999999999999999942 2334678999999999999998776 5899999999999999999999876
Q ss_pred CC-cccceeccc----CCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccC--
Q 001334 519 SN-RRLDIRNTA----QANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTG-- 591 (1097)
Q Consensus 519 ~~-~~l~Ir~~~----~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g-- 591 (1097)
.. +.+.+..++ ..+|++|.|+.++.|+++.|++.||.+|...|.+++|.||.+|||||+||+|+|.-+....+
T Consensus 205 ~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~ge 284 (1041)
T KOG0243|consen 205 TSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGE 284 (1041)
T ss_pred ccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcch
Confidence 65 777777776 66889999999999999999999999999999999999999999999999999976654322
Q ss_pred -ceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEE
Q 001334 592 -SILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMF 670 (1097)
Q Consensus 592 -~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMI 670 (1097)
-...|+|+||||||||.++++|+.+.|.+||..||+||.+||+||.||.++..|||||+|||||||||||||.+||+||
T Consensus 285 elvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iI 364 (1041)
T KOG0243|consen 285 ELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCII 364 (1041)
T ss_pred hhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEE
Confidence 2567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCcHHHHHHHHHHHHHhccccccccccccc--hhHHHHHHHHHHHHHH
Q 001334 671 VHINPEHNAIGETISTLKFAERVSSIELGAARSNKE--SGEIRELREEISNLKQ 722 (1097)
Q Consensus 671 a~ISP~~~~~~ETLsTLrFAsRak~I~~~~~~~~~~--~~~i~eLreEI~~LK~ 722 (1097)
|||||+..+++||++||.||.||++|+++|..+.+- ...+++|-.||+.||.
T Consensus 365 ATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~ 418 (1041)
T KOG0243|consen 365 ATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKR 418 (1041)
T ss_pred EEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999776543 2344455555555544
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-83 Score=757.43 Aligned_cols=352 Identities=40% Similarity=0.602 Sum_probs=310.8
Q ss_pred CCEEEEEEeCCCCCCCCCCCC-ceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCC-------CChHHHHhh-hhhhH
Q 001334 367 GTIRVYCRVRPFLPGQSNGQS-TVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPN-------VSQEQIYVD-TQPLV 437 (1097)
Q Consensus 367 GnIRV~cRVRP~~~~E~~~~s-~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~-------atQeeVF~e-v~PLV 437 (1097)
.+|.|.||||||...|....+ +|... .+.++.|.+|... + ....|+||+.|+.. ++|..||++ +.+++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm-~gn~ttii~~~~~-k-~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL 80 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQM-QGNTTTIINPKGS-K-DAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREML 80 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEe-cCCceeeecCCCc-c-cCCceecceeeecCCCCCCchhhHHHHHHHHhHHHH
Confidence 469999999999998866543 33333 3445566665422 2 23459999999754 689999999 59999
Q ss_pred hhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhh-cCCceEEEEEEEEEEEecceeeeccCC
Q 001334 438 RSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNT-RGDMIKYEVGVQMIEIYNEQVRDLLVS 516 (1097)
Q Consensus 438 ~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~-~~~~~~y~V~VS~lEIYNE~V~DLL~~ 516 (1097)
+.+++|||+||||||||||||||||+|.. .++++|||||++++||..+.. ..+...|.|.|||+|||||+|+|||+.
T Consensus 81 ~~AfEGYN~ClFAYGQTGSGKSYTMMG~~--~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~ 158 (1221)
T KOG0245|consen 81 DHAFEGYNVCLFAYGQTGSGKSYTMMGFQ--EPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNA 158 (1221)
T ss_pred HHHhcccceEEEEeccCCCCcceeeeccC--CCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhC
Confidence 99999999999999999999999999965 457889999999999997754 345689999999999999999999986
Q ss_pred CCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeec--cC--c
Q 001334 517 DGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELV--TG--S 592 (1097)
Q Consensus 517 ~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~--~g--~ 592 (1097)
......|.+|+++. .|+||.+|+.+.|+|..|+.++|..|++.|++++|+||+.|||||+||+|.+.+.... ++ .
T Consensus 159 p~~kg~LRVREHP~-lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~s 237 (1221)
T KOG0245|consen 159 PKSKGGLRVREHPI-LGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDS 237 (1221)
T ss_pred CCCCCCceeeccCc-cChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcc
Confidence 56677899999986 8999999999999999999999999999999999999999999999999999877543 22 5
Q ss_pred eeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhC-------CCCccCCCCchhhhhhhccCCCc
Q 001334 593 ILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQK-------SAHIPYRNSKLTQVLQDSLGGHA 665 (1097)
Q Consensus 593 ~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k-------~~hIPYRdSKLTrLLqDSLGGnS 665 (1097)
...|+|+|||||||||++.+|+.|+||||+.+|||||.+||+||+||++. +.+||||||.|||||+++|||||
T Consensus 238 ek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNS 317 (1221)
T KOG0245|consen 238 EKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNS 317 (1221)
T ss_pred eeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcc
Confidence 67899999999999999999999999999999999999999999999852 34899999999999999999999
Q ss_pred eeeEEEecCCCCCcHHHHHHHHHHHHHhccccccccccccc-hhHHHHHHHHHHHHHHHH
Q 001334 666 KTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKE-SGEIRELREEISNLKQTL 724 (1097)
Q Consensus 666 kTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~~~~~~~-~~~i~eLreEI~~LK~~L 724 (1097)
||+||++|||++.||+|||+|||||.|||+|++.++.+... ...|++|++||.+||..|
T Consensus 318 KTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll 377 (1221)
T KOG0245|consen 318 KTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLL 377 (1221)
T ss_pred hhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877654 578999999999998755
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=4.2e-80 Score=749.30 Aligned_cols=350 Identities=41% Similarity=0.623 Sum_probs=301.0
Q ss_pred CCCEEEEEEeCCCCCCCCCCCCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhhh-hhhHhhhcCCc
Q 001334 366 KGTIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVDT-QPLVRSVLDGF 444 (1097)
Q Consensus 366 KGnIRV~cRVRP~~~~E~~~~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~ev-~PLV~svLdGy 444 (1097)
.++|+|||||||+...+.. ...+... .++.+.+. .+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 97 ds~VkV~VRVRPl~~~E~g-~~iV~~~-s~dsl~I~---------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGy 165 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEEG-EMIVQKM-SNDSLTIN---------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165 (1320)
T ss_pred CCCeEEEEEcCCCCCccCC-CeeEEEc-CCCeEEEe---------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5799999999999987542 3333333 33444442 25799999999999999999985 89999999999
Q ss_pred ceeEEeeccCCCCcceeecCCCCC------cccccCchHHHHHHHHHHhhhc-----CCceEEEEEEEEEEEecceeeec
Q 001334 445 NVCIFAYGQTGSGKTYTMSGPDLT------AEETWGVNYRALRDLFQISNTR-----GDMIKYEVGVQMIEIYNEQVRDL 513 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM~G~~~~------~~e~~GIipRal~~LF~~~~~~-----~~~~~y~V~VS~lEIYNE~V~DL 513 (1097)
|+||||||||||||||||+|+... ...++|||||++++||..+... ...+.|.|+|||+|||||+||||
T Consensus 166 NaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DL 245 (1320)
T PLN03188 166 NSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDL 245 (1320)
T ss_pred cceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceec
Confidence 999999999999999999997421 2457899999999999987542 23568999999999999999999
Q ss_pred cCCCCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeec--c-
Q 001334 514 LVSDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELV--T- 590 (1097)
Q Consensus 514 L~~~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~--~- 590 (1097)
|.+. ...+.|+++.. +|++|.|++++.|.|.+|+.++|..|..+|++++|.+|..|||||+||+|+|...... .
T Consensus 246 Lsp~--~k~L~IRED~k-gGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg 322 (1320)
T PLN03188 246 LDPS--QKNLQIREDVK-SGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADG 322 (1320)
T ss_pred cccc--cCCceEEEcCC-CCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCC
Confidence 9764 34688888875 7899999999999999999999999999999999999999999999999999865432 2
Q ss_pred -CceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhh-----CCCCccCCCCchhhhhhhccCCC
Q 001334 591 -GSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQ-----KSAHIPYRNSKLTQVLQDSLGGH 664 (1097)
Q Consensus 591 -g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~-----k~~hIPYRdSKLTrLLqDSLGGn 664 (1097)
.....|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+. +..||||||||||+||||+||||
T Consensus 323 ~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGN 402 (1320)
T PLN03188 323 LSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGN 402 (1320)
T ss_pred CcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCC
Confidence 235689999999999999999999999999999999999999999999985 45799999999999999999999
Q ss_pred ceeeEEEecCCCCCcHHHHHHHHHHHHHhccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 001334 665 AKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKESGEIRELREEISNLKQTLEKKEA 729 (1097)
Q Consensus 665 SkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~~~~~~~~~~i~eLreEI~~LK~~L~~~e~ 729 (1097)
|+|+|||||||...+++||++||+||+||+.|++.+..+......+..|++.|..|+.+|.+++.
T Consensus 403 SKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~ 467 (1320)
T PLN03188 403 AKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKA 467 (1320)
T ss_pred ceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765555555566666666666655544
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.7e-79 Score=688.29 Aligned_cols=320 Identities=40% Similarity=0.661 Sum_probs=288.9
Q ss_pred CEEEEEEeCCCCCCCCCC--CCceEEecCCCcEEEeCCCCC---------CCCCceeEeeceeeCCCCChHHHHhhh-hh
Q 001334 368 TIRVYCRVRPFLPGQSNG--QSTVDYIGENGNIMVTNPFKQ---------GKDARKMFLFNKVFAPNVSQEQIYVDT-QP 435 (1097)
Q Consensus 368 nIRV~cRVRP~~~~E~~~--~s~v~~~~~~~~i~I~~p~~~---------gk~~~k~F~FD~VF~~~atQeeVF~ev-~P 435 (1097)
+|+|||||||+.+.|... ..++.+. ++ .+++.+|... .....+.|.||+||+++++|++||+.+ .|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~-~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~p 78 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVV-DD-RMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKP 78 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEc-CC-CEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHH
Confidence 699999999999877433 3344443 33 4445554332 123468999999999999999999985 89
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccC
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLV 515 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~ 515 (1097)
+|+++++|||+||||||||||||||||+|++ .++||+||++++||+.++...+.+.|.|+|||+|||||+|+|||+
T Consensus 79 lv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~----~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~ 154 (338)
T cd01370 79 LVDGVLNGYNATVFAYGATGAGKTHTMLGTD----SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLS 154 (338)
T ss_pred HHHHHHCCCCceEEeeCCCCCCCeEEEcCCC----CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCC
Confidence 9999999999999999999999999999965 568999999999999998887788999999999999999999997
Q ss_pred CCCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeec---cCc
Q 001334 516 SDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELV---TGS 592 (1097)
Q Consensus 516 ~~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~---~g~ 592 (1097)
+. ...+.++++.. +|++|.|++++.|.|++|++++|+.|.++|++++|.+|..|||||+||+|+|.+.+.. ...
T Consensus 155 ~~--~~~l~i~ed~~-~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~ 231 (338)
T cd01370 155 PS--SGPLELREDPN-QGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQ 231 (338)
T ss_pred CC--CCCceEEEcCC-CCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCc
Confidence 65 45688998875 7899999999999999999999999999999999999999999999999999988765 456
Q ss_pred eeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCC---CCccCCCCchhhhhhhccCCCceeeE
Q 001334 593 ILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKS---AHIPYRNSKLTQVLQDSLGGHAKTLM 669 (1097)
Q Consensus 593 ~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~---~hIPYRdSKLTrLLqDSLGGnSkTlM 669 (1097)
...|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|++++ .||||||||||+||||+|||||+|+|
T Consensus 232 ~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~ 311 (338)
T cd01370 232 VRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVM 311 (338)
T ss_pred EEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEE
Confidence 788999999999999999999999999999999999999999999999887 89999999999999999999999999
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHhccc
Q 001334 670 FVHINPEHNAIGETISTLKFAERVSSI 696 (1097)
Q Consensus 670 Ia~ISP~~~~~~ETLsTLrFAsRak~I 696 (1097)
|+||||+..+++||++||+||+||++|
T Consensus 312 I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 312 IANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999986
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.7e-78 Score=680.06 Aligned_cols=320 Identities=43% Similarity=0.647 Sum_probs=280.5
Q ss_pred CCEEEEEEeCCCCCCCCCCC--CceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhhh-hhhHhhhcCC
Q 001334 367 GTIRVYCRVRPFLPGQSNGQ--STVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVDT-QPLVRSVLDG 443 (1097)
Q Consensus 367 GnIRV~cRVRP~~~~E~~~~--s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~ev-~PLV~svLdG 443 (1097)
.+|||||||||+...|.... .++... ++..+.+... ..+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~-~~~~~~~~~~------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G 73 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKL-SSDTLVWHSH------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSG 73 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEc-CCCcEEeeCC------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 47999999999998775432 233332 3334443321 147899999999999999999985 9999999999
Q ss_pred cceeEEeeccCCCCcceeecCCCCCc----ccccCchHHHHHHHHHHhhhc----CCceEEEEEEEEEEEecceeeeccC
Q 001334 444 FNVCIFAYGQTGSGKTYTMSGPDLTA----EETWGVNYRALRDLFQISNTR----GDMIKYEVGVQMIEIYNEQVRDLLV 515 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM~G~~~~~----~e~~GIipRal~~LF~~~~~~----~~~~~y~V~VS~lEIYNE~V~DLL~ 515 (1097)
||+||||||||||||||||+|+.... ..++||+||++++||..+... .....|.|+|||+|||||+|||||.
T Consensus 74 ~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~ 153 (337)
T cd01373 74 YNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLD 153 (337)
T ss_pred CceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCC
Confidence 99999999999999999999975422 357899999999999876543 3457899999999999999999997
Q ss_pred CCCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccC--ce
Q 001334 516 SDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTG--SI 593 (1097)
Q Consensus 516 ~~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g--~~ 593 (1097)
+.. ..+.++++.. +|++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|...+...+ ..
T Consensus 154 ~~~--~~l~i~e~~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~ 230 (337)
T cd01373 154 PTS--RNLKIREDIK-KGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNI 230 (337)
T ss_pred CCC--CCceEEECCC-CCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcE
Confidence 643 4578888765 789999999999999999999999999999999999999999999999999987765433 35
Q ss_pred eeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhh----CCCCccCCCCchhhhhhhccCCCceeeE
Q 001334 594 LKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQ----KSAHIPYRNSKLTQVLQDSLGGHAKTLM 669 (1097)
Q Consensus 594 ~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~----k~~hIPYRdSKLTrLLqDSLGGnSkTlM 669 (1097)
..|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++ +..|||||+||||+||||+|||||+|+|
T Consensus 231 ~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~ 310 (337)
T cd01373 231 RTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTI 310 (337)
T ss_pred EEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEE
Confidence 679999999999999999999999999999999999999999999985 4689999999999999999999999999
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHhccc
Q 001334 670 FVHINPEHNAIGETISTLKFAERVSSI 696 (1097)
Q Consensus 670 Ia~ISP~~~~~~ETLsTLrFAsRak~I 696 (1097)
||||||+..+++||++||+||+||+.|
T Consensus 311 I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 311 IANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999986
No 8
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=8e-79 Score=693.01 Aligned_cols=364 Identities=38% Similarity=0.579 Sum_probs=310.6
Q ss_pred CCCEEEEEEeCCCCCCCCCCCC-ceEEecC-CCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHhhhcC
Q 001334 366 KGTIRVYCRVRPFLPGQSNGQS-TVDYIGE-NGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSVLD 442 (1097)
Q Consensus 366 KGnIRV~cRVRP~~~~E~~~~s-~v~~~~~-~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~svLd 442 (1097)
-++|+|+||+||....|....+ .+..... ..++.+.. ++ ..+.|.||+||.|+++|++||+. +.|+|++||.
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~----~~-~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~ 80 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLET----TK-ETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLL 80 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEec----cc-ccccceeeeecCCCccHHHHHHHHHHHHHHHHhc
Confidence 4899999999999877654333 2332222 34444432 22 23899999999999999999988 5999999999
Q ss_pred CcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCCcc
Q 001334 443 GFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRR 522 (1097)
Q Consensus 443 GyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~ 522 (1097)
|||+||||||||||||||||.|... +....||+||++++||..+........|.|.|||+|||+|+|+|||++. ...
T Consensus 81 GYNGTvfaYGqT~sGKTytm~G~~~-d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~--k~n 157 (607)
T KOG0240|consen 81 GYNGTVFAYGQTGSGKTYTMEGIGH-DPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE--KTN 157 (607)
T ss_pred ccceeEEEecCCCCCcceeecccCC-ChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc--cCC
Confidence 9999999999999999999999764 3456799999999999999998888899999999999999999999754 456
Q ss_pred cceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeEEEee
Q 001334 523 LDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVD 602 (1097)
Q Consensus 523 l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL~LVD 602 (1097)
+.+.++ ...+++|+|+++..|.++++++++++.|..+|+++.|.||.+|||||+||+|+|.+.+..+.....|+|+|||
T Consensus 158 lsvheD-K~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVD 236 (607)
T KOG0240|consen 158 LSVHED-KNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVD 236 (607)
T ss_pred ceeecc-cCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEE
Confidence 777777 5578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhC-CCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcHH
Q 001334 603 LAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQK-SAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIG 681 (1097)
Q Consensus 603 LAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k-~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ 681 (1097)
|||||+++++|+.|.-+.|+.+||+||+|||+||+||+.+ ..|||||||||||||||+|||||+|.+|+|++|+..+..
T Consensus 237 LaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ 316 (607)
T KOG0240|consen 237 LAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEA 316 (607)
T ss_pred cccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccc
Confidence 9999999999999999999999999999999999999997 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccccch--hHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcc
Q 001334 682 ETISTLKFAERVSSIELGAARSNKES--GEIRELREEISNLKQTL---EKKEAELEQLRRGV 738 (1097)
Q Consensus 682 ETLsTLrFAsRak~I~~~~~~~~~~~--~~i~eLreEI~~LK~~L---~~~e~eleqlr~~~ 738 (1097)
||.+||+|+.||+.|++.+..+...+ ...+.|+.+...+.... +....++..++.+.
T Consensus 317 ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E 378 (607)
T KOG0240|consen 317 ETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGE 378 (607)
T ss_pred ccccchhhccccccccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccC
Confidence 99999999999999998776554332 22344444433333333 33333344444443
No 9
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-78 Score=723.33 Aligned_cols=352 Identities=43% Similarity=0.656 Sum_probs=300.6
Q ss_pred CCCEEEEEEeCCCCCCCCCCCCceEEecCCCcEEEeCCCCC--CCCCceeEeeceeeCCCCChHHHHhh-hhhhHhhhcC
Q 001334 366 KGTIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQ--GKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSVLD 442 (1097)
Q Consensus 366 KGnIRV~cRVRP~~~~E~~~~s~v~~~~~~~~i~I~~p~~~--gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~svLd 442 (1097)
..+|.|++||||+.+.+........+...++...+...... .......|.||+||+++++|++||+. ++|+|.+||.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 35899999999998874333323323323333322221111 11114789999999999999999988 7999999999
Q ss_pred CcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCCcc
Q 001334 443 GFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRR 522 (1097)
Q Consensus 443 GyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~ 522 (1097)
|||++|||||||||||||||.|. +++|||||+++.+||+.+.... .+.|.|.|||+|||||.|+|||.+++..
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G~----~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~~-- 157 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSGS----EDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDGGD-- 157 (675)
T ss_pred CcccceeeecCCCCCCceEEecc----CCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCCCC--
Confidence 99999999999999999999995 4678999999999999998877 6799999999999999999999877543
Q ss_pred cceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeEEEee
Q 001334 523 LDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVD 602 (1097)
Q Consensus 523 l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL~LVD 602 (1097)
+.|++++. +|++|+||++..|.|++++..||..|.++|+++.|.+|..|||||+||+|.|......... ..|+|+|||
T Consensus 158 L~irED~~-~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lID 235 (675)
T KOG0242|consen 158 LRLREDSE-GGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLID 235 (675)
T ss_pred ceEeEcCC-CCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhh
Confidence 88999886 5999999999999999999999999999999999999999999999999999987754433 678999999
Q ss_pred cCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhC--CCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcH
Q 001334 603 LAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQK--SAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAI 680 (1097)
Q Consensus 603 LAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k--~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~ 680 (1097)
||||||+.++++.|.|++|+.+||+||++||+||.+|+++ ..||||||||||||||++||||++|.|||||+|+..++
T Consensus 236 LAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~ 315 (675)
T KOG0242|consen 236 LAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHY 315 (675)
T ss_pred hhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHH
Confidence 9999999999999999999999999999999999999976 56999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccccccc--cchhHHHHHHHHHHHHHHHHHH
Q 001334 681 GETISTLKFAERVSSIELGAARSN--KESGEIRELREEISNLKQTLEK 726 (1097)
Q Consensus 681 ~ETLsTLrFAsRak~I~~~~~~~~--~~~~~i~eLreEI~~LK~~L~~ 726 (1097)
+||.+||+||+||+.|++.+..+. .....+..++.++..|+.++..
T Consensus 316 ~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~ 363 (675)
T KOG0242|consen 316 EETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELER 363 (675)
T ss_pred HHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999999998775543 2333444445666666666655
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.4e-76 Score=666.51 Aligned_cols=316 Identities=38% Similarity=0.592 Sum_probs=281.6
Q ss_pred CCEEEEEEeCCCCCCCCC--CCCceEEecCCCcEEEeCCCCC--------CCCCceeEeeceeeCCCCChHHHHhh-hhh
Q 001334 367 GTIRVYCRVRPFLPGQSN--GQSTVDYIGENGNIMVTNPFKQ--------GKDARKMFLFNKVFAPNVSQEQIYVD-TQP 435 (1097)
Q Consensus 367 GnIRV~cRVRP~~~~E~~--~~s~v~~~~~~~~i~I~~p~~~--------gk~~~k~F~FD~VF~~~atQeeVF~e-v~P 435 (1097)
.+|+|||||||+.+.|.. ...++.+. ++..+.+..|... +....+.|.||+||+++++|++||+. +.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p 79 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVI-NSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALP 79 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEc-CCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHH
Confidence 379999999999987644 23445543 4556666655331 22346789999999999999999998 599
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccC
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLV 515 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~ 515 (1097)
+|+++++|||+||||||||||||||||+|++ .++||+||++++||+.+.. |.|+|||+|||||+|||||.
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~----~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~ 149 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP----GDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLE 149 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCC
Confidence 9999999999999999999999999999965 6789999999999998765 99999999999999999998
Q ss_pred CCCC----CcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeecc-
Q 001334 516 SDGS----NRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVT- 590 (1097)
Q Consensus 516 ~~~~----~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~- 590 (1097)
+... ...+.++++.. ++++|.|++++.|.|++|++++|..|.++|++++|.+|.+|||||+||+|+|.+.+...
T Consensus 150 ~~~~~~~~~~~l~i~ed~~-~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~ 228 (345)
T cd01368 150 DSPSSTKKRQSLRLREDHN-GNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSD 228 (345)
T ss_pred CccccccCCCceEEEECCC-CCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcc
Confidence 7543 34688888875 78999999999999999999999999999999999999999999999999998766432
Q ss_pred -------CceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhh------CCCCccCCCCchhhhh
Q 001334 591 -------GSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQ------KSAHIPYRNSKLTQVL 657 (1097)
Q Consensus 591 -------g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~------k~~hIPYRdSKLTrLL 657 (1097)
+....|+|+|||||||||..++++.|++++|+.+||+||++|++||.+|++ +..|||||+||||+||
T Consensus 229 ~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL 308 (345)
T cd01368 229 GDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLF 308 (345)
T ss_pred cccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHH
Confidence 456789999999999999999999999999999999999999999999986 5689999999999999
Q ss_pred hhccCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhc
Q 001334 658 QDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVS 694 (1097)
Q Consensus 658 qDSLGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak 694 (1097)
||+|||||+|+||+||||...+++||++||+||.+|+
T Consensus 309 ~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 309 QNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1e-75 Score=661.68 Aligned_cols=329 Identities=41% Similarity=0.617 Sum_probs=292.2
Q ss_pred CCEEEEEEeCCCCCCCCCCC--CceEEecCCCcEEEeCCCCCC--CCCceeEeeceeeCCC-------CChHHHHhh-hh
Q 001334 367 GTIRVYCRVRPFLPGQSNGQ--STVDYIGENGNIMVTNPFKQG--KDARKMFLFNKVFAPN-------VSQEQIYVD-TQ 434 (1097)
Q Consensus 367 GnIRV~cRVRP~~~~E~~~~--s~v~~~~~~~~i~I~~p~~~g--k~~~k~F~FD~VF~~~-------atQeeVF~e-v~ 434 (1097)
++|+|||||||+...|.... .++.+ .+..+.+.++.... ....+.|.||+||++. ++|++||+. +.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~--~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQM--PGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEE--CCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 68999999999998765433 33443 33667777664311 2346789999999999 999999998 48
Q ss_pred hhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCC-ceEEEEEEEEEEEecceeeec
Q 001334 435 PLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGD-MIKYEVGVQMIEIYNEQVRDL 513 (1097)
Q Consensus 435 PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~-~~~y~V~VS~lEIYNE~V~DL 513 (1097)
|+|+++++|||+||||||||||||||||+|+. .++||+||++++||+.+..... ...|.|+|||+|||||+||||
T Consensus 79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~----~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DL 154 (356)
T cd01365 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYK----EEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDL 154 (356)
T ss_pred HHHHHHhCCCceEEEEecCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeC
Confidence 99999999999999999999999999999965 4689999999999998876554 678999999999999999999
Q ss_pred cCCCC-CCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeec---
Q 001334 514 LVSDG-SNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELV--- 589 (1097)
Q Consensus 514 L~~~~-~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~--- 589 (1097)
|++.. ....+.++++.. .|++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.+..
T Consensus 155 L~~~~~~~~~l~i~~~~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~ 233 (356)
T cd01365 155 LNPKKKNKGNLKVREHPV-LGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKET 233 (356)
T ss_pred CCCCccCCcCceEEECCC-CCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCC
Confidence 98764 345788888764 7899999999999999999999999999999999999999999999999999887654
Q ss_pred -cCceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhC--------CCCccCCCCchhhhhhhc
Q 001334 590 -TGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQK--------SAHIPYRNSKLTQVLQDS 660 (1097)
Q Consensus 590 -~g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k--------~~hIPYRdSKLTrLLqDS 660 (1097)
......|+|+|||||||||..+++..|++++|+.+||+||++|++||.+|+.. ..|||||+||||+||||+
T Consensus 234 ~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~ 313 (356)
T cd01365 234 DLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKEN 313 (356)
T ss_pred CCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHh
Confidence 34567899999999999999999999999999999999999999999999863 589999999999999999
Q ss_pred cCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhccccccccc
Q 001334 661 LGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAAR 702 (1097)
Q Consensus 661 LGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~~~ 702 (1097)
|||+++|+||+||||...+++||++||+||+|+++|++.+..
T Consensus 314 lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~ 355 (356)
T cd01365 314 LGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVV 355 (356)
T ss_pred cCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcccc
Confidence 999999999999999999999999999999999999987643
No 12
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=5.1e-75 Score=648.19 Aligned_cols=315 Identities=37% Similarity=0.553 Sum_probs=279.3
Q ss_pred CCEEEEEEeCCCCCCCCCCC-CceEEecCCCcEEEeCCCCC----CCCCceeEeeceeeCCCCChHHHHhh-hhhhHhhh
Q 001334 367 GTIRVYCRVRPFLPGQSNGQ-STVDYIGENGNIMVTNPFKQ----GKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSV 440 (1097)
Q Consensus 367 GnIRV~cRVRP~~~~E~~~~-s~v~~~~~~~~i~I~~p~~~----gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~sv 440 (1097)
++|+|||||||+.+.|.... ..+..+..++.+.+..+... .....+.|.||+||+++++|++||+. +.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 48999999999998875332 23333333345666544221 11125789999999999999999998 69999999
Q ss_pred cCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCC
Q 001334 441 LDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSN 520 (1097)
Q Consensus 441 LdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~ 520 (1097)
++|||+||||||||||||||||+|+. .++||+||++++||+.++... +.|.|++||+|||||+|+|||++ .
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~----~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~---~ 151 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDE----NQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLND---R 151 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcC----CcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccC---c
Confidence 99999999999999999999999965 678999999999999887665 58999999999999999999976 4
Q ss_pred cccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeEEE
Q 001334 521 RRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHL 600 (1097)
Q Consensus 521 ~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL~L 600 (1097)
+.+.++++.. ++++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+. ....|+|+|
T Consensus 152 ~~l~i~~~~~-~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~ 227 (322)
T cd01367 152 KRLSVLEDGK-GNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSF 227 (322)
T ss_pred cceeEEEcCC-CCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEE
Confidence 5688888765 789999999999999999999999999999999999999999999999999987764 567899999
Q ss_pred eecCCCcccccch-hhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCc
Q 001334 601 VDLAGSERVDKSE-AVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNA 679 (1097)
Q Consensus 601 VDLAGSER~~ks~-a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~ 679 (1097)
||||||||...++ ..+++++|+.+||+||++|++||.+|++++.||||||||||+||||+|||||+|+||+||||...+
T Consensus 228 vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~ 307 (322)
T cd01367 228 IDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASS 307 (322)
T ss_pred eecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhh
Confidence 9999999988765 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 001334 680 IGETISTLKFAERVS 694 (1097)
Q Consensus 680 ~~ETLsTLrFAsRak 694 (1097)
++||++||+||+|++
T Consensus 308 ~~eTl~tL~fa~r~k 322 (322)
T cd01367 308 CEHTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999986
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.7e-74 Score=650.45 Aligned_cols=335 Identities=39% Similarity=0.595 Sum_probs=294.8
Q ss_pred CCEEEEEEeCCCCCCCCCC--CCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHhhhcCC
Q 001334 367 GTIRVYCRVRPFLPGQSNG--QSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSVLDG 443 (1097)
Q Consensus 367 GnIRV~cRVRP~~~~E~~~--~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~svLdG 443 (1097)
+||+|+|||||+...|... ..++.+...+..+.+.++. ......+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~-~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGG-ADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCC-cccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 6999999999999887543 3344444444555555432 223356789999999999999999988 59999999999
Q ss_pred cceeEEeeccCCCCcceeecCCCCC-------cccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCC
Q 001334 444 FNVCIFAYGQTGSGKTYTMSGPDLT-------AEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVS 516 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM~G~~~~-------~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~ 516 (1097)
||+||||||||||||||||+|+... ..+.+||+||++++||+.+... ...|.|+|||+|||||+|+|||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 9999999999999999999997532 1356899999999999988765 458999999999999999999987
Q ss_pred CC-CCcccceeccc-CCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeecc---C
Q 001334 517 DG-SNRRLDIRNTA-QANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVT---G 591 (1097)
Q Consensus 517 ~~-~~~~l~Ir~~~-~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~---g 591 (1097)
.. ..+.+.+++++ ...|++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|...+... .
T Consensus 159 ~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~ 238 (352)
T cd01364 159 ESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEE 238 (352)
T ss_pred ccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCc
Confidence 64 35678888874 4578999999999999999999999999999999999999999999999999998766432 2
Q ss_pred ceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEEE
Q 001334 592 SILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFV 671 (1097)
Q Consensus 592 ~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa 671 (1097)
....|+|+||||||||+..+.++.+.+++|+..||+||++|++||.+|+.++.|||||+||||+||+|+|||||+|+||+
T Consensus 239 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~ 318 (352)
T cd01364 239 LVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIA 318 (352)
T ss_pred cEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcHHHHHHHHHHHHHhccccccccccc
Q 001334 672 HINPEHNAIGETISTLKFAERVSSIELGAARSN 704 (1097)
Q Consensus 672 ~ISP~~~~~~ETLsTLrFAsRak~I~~~~~~~~ 704 (1097)
||||...+++||++||+||+|+++|++.|..+.
T Consensus 319 ~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 319 TISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 999999999999999999999999999886543
No 14
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.4e-74 Score=643.75 Aligned_cols=314 Identities=38% Similarity=0.577 Sum_probs=284.7
Q ss_pred CEEEEEEeCCCCCCCCCCCCceEEecCC----CcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHhhhcC
Q 001334 368 TIRVYCRVRPFLPGQSNGQSTVDYIGEN----GNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSVLD 442 (1097)
Q Consensus 368 nIRV~cRVRP~~~~E~~~~s~v~~~~~~----~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~svLd 442 (1097)
||+|||||||+.+.|.+...++...+.+ ..+.+.+|... ...+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~~--~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNR--GETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCCC--CCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 6999999999999887777777765543 25666665322 245789999999999999999998 6999999999
Q ss_pred CcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCCcc
Q 001334 443 GFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRR 522 (1097)
Q Consensus 443 GyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~ 522 (1097)
|||+||||||||||||||||+|+. .++||+||++++||+..+... +.|.|++||+|||||.|+|||.+. ...
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~----~~~Glipr~~~~Lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~--~~~ 150 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGDP----NEPGLIPRTLSDLLRMGRKQA--WTGAFSMSYYEIYNEKVYDLLEPA--KKE 150 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCCc----CccchHHHHHHHHHHHHhhcc--ccceEEEEEEEEECCEeeEccCCC--CCC
Confidence 999999999999999999999964 478999999999999876543 689999999999999999999765 345
Q ss_pred cceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeEEEee
Q 001334 523 LDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVD 602 (1097)
Q Consensus 523 l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL~LVD 602 (1097)
+.|+++.. ++++|.|++++.|.|++|+.+++..|.++|.+++|.+|..|||||+||+|+|.+.+. .....|+|+|||
T Consensus 151 l~i~~~~~-~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VD 227 (319)
T cd01376 151 LPIREDKD-GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLID 227 (319)
T ss_pred ceEEEcCC-CCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEE
Confidence 77887754 789999999999999999999999999999999999999999999999999987753 346789999999
Q ss_pred cCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcHHH
Q 001334 603 LAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGE 682 (1097)
Q Consensus 603 LAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~E 682 (1097)
||||||..+++..|.+++|+.+||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||+||||...+++|
T Consensus 228 LAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~e 307 (319)
T cd01376 228 LAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQD 307 (319)
T ss_pred CCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 001334 683 TISTLKFAERVS 694 (1097)
Q Consensus 683 TLsTLrFAsRak 694 (1097)
||+||+||+|++
T Consensus 308 Tl~TL~fa~r~~ 319 (319)
T cd01376 308 TLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHHhhC
Confidence 999999999986
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.9e-74 Score=646.05 Aligned_cols=326 Identities=45% Similarity=0.701 Sum_probs=292.0
Q ss_pred CCEEEEEEeCCCCCCCCCC--CCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHhhhcCC
Q 001334 367 GTIRVYCRVRPFLPGQSNG--QSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSVLDG 443 (1097)
Q Consensus 367 GnIRV~cRVRP~~~~E~~~--~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~svLdG 443 (1097)
.+|+|+|||||+++.|... .+.+.....++.+.+.++........+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 3899999999999876543 34555556667777776654344567899999999999999999988 59999999999
Q ss_pred cceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCCccc
Q 001334 444 FNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRL 523 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~l 523 (1097)
||+||||||||||||||||+|++. ....+|||||++++||+.+..... ..|.|+|||+|||||+|+|||.+.. ...+
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~-~~~l 157 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVRE-PPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQ-KKKL 157 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCC-cccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCC-CCce
Confidence 999999999999999999999753 235789999999999998876654 6899999999999999999997653 3567
Q ss_pred ceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeec---cCceeeeeEEE
Q 001334 524 DIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELV---TGSILKGCLHL 600 (1097)
Q Consensus 524 ~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~---~g~~~~skL~L 600 (1097)
.+++++. +|++|.|++++.|.|++|+..+|..|.++|++++|.+|..|||||+||+|+|.+.+.. .+....|+|+|
T Consensus 158 ~i~~~~~-~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~ 236 (333)
T cd01371 158 ELKERPD-RGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNL 236 (333)
T ss_pred eEEEcCC-CCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEE
Confidence 8888765 6899999999999999999999999999999999999999999999999999987763 34466899999
Q ss_pred eecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCC-CccCCCCchhhhhhhccCCCceeeEEEecCCCCCc
Q 001334 601 VDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSA-HIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNA 679 (1097)
Q Consensus 601 VDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~-hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~ 679 (1097)
||||||||..+++..|++++|+..||+||.+|++||.+|+.+.. |||||+||||+||+|+|||||+|+||+||+|...+
T Consensus 237 VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~ 316 (333)
T cd01371 237 VDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYN 316 (333)
T ss_pred EECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCcccc
Confidence 99999999999999999999999999999999999999998775 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccc
Q 001334 680 IGETISTLKFAERVSSI 696 (1097)
Q Consensus 680 ~~ETLsTLrFAsRak~I 696 (1097)
++||++||+||+|+++|
T Consensus 317 ~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 317 YDETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999986
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=6.4e-74 Score=639.05 Aligned_cols=320 Identities=43% Similarity=0.690 Sum_probs=289.6
Q ss_pred CCEEEEEEeCCCCCCCCC--CCCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhhh-hhhHhhhcCC
Q 001334 367 GTIRVYCRVRPFLPGQSN--GQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVDT-QPLVRSVLDG 443 (1097)
Q Consensus 367 GnIRV~cRVRP~~~~E~~--~~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~ev-~PLV~svLdG 443 (1097)
.+|+|+|||||+...|.. ..+++.+ .++..+.+.++ ...+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~-~~~~~v~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G 75 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKF-PGEDTVSIAGS-----DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNG 75 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEE-cCCCEEEecCC-----CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 489999999999987732 3344444 34445665543 2457899999999999999999885 9999999999
Q ss_pred cceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCCccc
Q 001334 444 FNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRL 523 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~l 523 (1097)
||+||||||||||||||||+|+... ...+||+||++++||+.+........|.|++||+|||||+++|||.+. ...+
T Consensus 76 ~n~~i~ayG~tgSGKT~Tm~G~~~~-~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~--~~~l 152 (325)
T cd01369 76 YNGTIFAYGQTGSGKTYTMEGPPGD-PELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS--KDNL 152 (325)
T ss_pred ccceEEEeCCCCCCceEEecCCCCc-cccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc--cCCc
Confidence 9999999999999999999997632 347899999999999998887777899999999999999999999765 3457
Q ss_pred ceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeEEEeec
Q 001334 524 DIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDL 603 (1097)
Q Consensus 524 ~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL~LVDL 603 (1097)
.++++.. +|++++|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+...+....|+|+||||
T Consensus 153 ~i~~~~~-~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDL 231 (325)
T cd01369 153 QVHEDKN-RGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDL 231 (325)
T ss_pred eEEEcCC-CCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEEC
Confidence 7777754 789999999999999999999999999999999999999999999999999999888778889999999999
Q ss_pred CCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCC-CCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcHHH
Q 001334 604 AGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKS-AHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGE 682 (1097)
Q Consensus 604 AGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~-~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~E 682 (1097)
||||+..++++.|.+++|+..||+||++|++||.+|++++ .|||||+||||+||+|+|||+|+|+||+||||...+++|
T Consensus 232 AGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~e 311 (325)
T cd01369 232 AGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESE 311 (325)
T ss_pred CCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHH
Confidence 9999999999999999999999999999999999999887 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q 001334 683 TISTLKFAERVSSI 696 (1097)
Q Consensus 683 TLsTLrFAsRak~I 696 (1097)
|++||+||+|+++|
T Consensus 312 Tl~TL~~a~r~~~i 325 (325)
T cd01369 312 TLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999986
No 17
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1e-73 Score=638.11 Aligned_cols=325 Identities=52% Similarity=0.860 Sum_probs=295.2
Q ss_pred CCCEEEEEEeCCCCCCCCCCC-CceEEecCC-CcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhhhhhhHhhhcCC
Q 001334 366 KGTIRVYCRVRPFLPGQSNGQ-STVDYIGEN-GNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDG 443 (1097)
Q Consensus 366 KGnIRV~cRVRP~~~~E~~~~-s~v~~~~~~-~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~ev~PLV~svLdG 443 (1097)
+|+|+|||||||+...+.... +.+.+.+.+ ..+.+.++ ....+.|.||+||+++++|++||+.+.|+|+++++|
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G 76 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDG 76 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCC----CCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCC
Confidence 699999999999998875433 344444443 44444332 234678999999999999999999999999999999
Q ss_pred cceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCC-ceEEEEEEEEEEEecceeeeccCCCC-CCc
Q 001334 444 FNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGD-MIKYEVGVQMIEIYNEQVRDLLVSDG-SNR 521 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~-~~~y~V~VS~lEIYNE~V~DLL~~~~-~~~ 521 (1097)
||+||||||||||||||||+|+. .++||+||++++||..+....+ .+.|.|++||+|||||+|+|||.+.. ...
T Consensus 77 ~~~~i~ayG~tgSGKT~tl~G~~----~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~ 152 (329)
T cd01366 77 YNVCIFAYGQTGSGKTYTMEGPP----ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKK 152 (329)
T ss_pred CceEEEEeCCCCCCCcEEecCCC----CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCC
Confidence 99999999999999999999965 6789999999999998877654 68999999999999999999998653 356
Q ss_pred ccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeEEEe
Q 001334 522 RLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLV 601 (1097)
Q Consensus 522 ~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL~LV 601 (1097)
.+.|++++ .+|+++.|++++.|.|++|+.+++..|.++|.+++|.+|..|||||+||+|+|.+.+...+....|+|+||
T Consensus 153 ~l~i~~~~-~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~V 231 (329)
T cd01366 153 KLEIKHDS-KGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLV 231 (329)
T ss_pred ceEEEECC-CCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEE
Confidence 78898887 47899999999999999999999999999999999999999999999999999998877788899999999
Q ss_pred ecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcHH
Q 001334 602 DLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIG 681 (1097)
Q Consensus 602 DLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ 681 (1097)
||||||+..+.++.|.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+|+|||+++|+||+||||...+++
T Consensus 232 DLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~ 311 (329)
T cd01366 232 DLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLS 311 (329)
T ss_pred ECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccc
Q 001334 682 ETISTLKFAERVSSIELG 699 (1097)
Q Consensus 682 ETLsTLrFAsRak~I~~~ 699 (1097)
||++||+||+|+++|+++
T Consensus 312 etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 312 ETLCSLRFASRVRSVELG 329 (329)
T ss_pred HHHHHHHHHHHhhcccCC
Confidence 999999999999999864
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=5.8e-74 Score=642.93 Aligned_cols=321 Identities=40% Similarity=0.659 Sum_probs=289.2
Q ss_pred CEEEEEEeCCCCCCCCCC--CCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHhhhcCCc
Q 001334 368 TIRVYCRVRPFLPGQSNG--QSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSVLDGF 444 (1097)
Q Consensus 368 nIRV~cRVRP~~~~E~~~--~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~svLdGy 444 (1097)
+|+|||||||+...|... ..++.+.+.+..+.+.+ .+.|.||+||+++++|++||+. +.|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~--------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 73 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT--------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGY 73 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC--------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999877543 34555555554544422 4789999999999999999998 589999999999
Q ss_pred ceeEEeeccCCCCcceeecCCCC--CcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCC-CCc
Q 001334 445 NVCIFAYGQTGSGKTYTMSGPDL--TAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDG-SNR 521 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM~G~~~--~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~-~~~ 521 (1097)
|+||||||||||||||||+|+.. ....++|||||++++||+.+........|.|.|||+|||||+|+|||.+.. ...
T Consensus 74 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 153 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKS 153 (341)
T ss_pred ccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCC
Confidence 99999999999999999999753 134678999999999999998877777999999999999999999998654 345
Q ss_pred ccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeec----------cC
Q 001334 522 RLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELV----------TG 591 (1097)
Q Consensus 522 ~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~----------~g 591 (1097)
.+.++++.. +|++|.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+.. ..
T Consensus 154 ~l~i~e~~~-~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~ 232 (341)
T cd01372 154 PIQIREDSK-GNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKN 232 (341)
T ss_pred CceEEECCC-CCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCC
Confidence 788888764 7899999999999999999999999999999999999999999999999999988763 34
Q ss_pred ceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCC---CCccCCCCchhhhhhhccCCCceee
Q 001334 592 SILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKS---AHIPYRNSKLTQVLQDSLGGHAKTL 668 (1097)
Q Consensus 592 ~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~---~hIPYRdSKLTrLLqDSLGGnSkTl 668 (1097)
....|+|+||||||||+.+++++.|++++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+|||+++|+
T Consensus 233 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~ 312 (341)
T cd01372 233 STLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTL 312 (341)
T ss_pred ceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEE
Confidence 5678999999999999999999999999999999999999999999999876 7999999999999999999999999
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHhcccc
Q 001334 669 MFVHINPEHNAIGETISTLKFAERVSSIE 697 (1097)
Q Consensus 669 MIa~ISP~~~~~~ETLsTLrFAsRak~I~ 697 (1097)
||+||||...+++||++||+||+|+++|+
T Consensus 313 ~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 313 MIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999985
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=9.8e-74 Score=636.89 Aligned_cols=315 Identities=41% Similarity=0.660 Sum_probs=285.2
Q ss_pred CEEEEEEeCCCCCCCCCCCCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHhhhcCCcce
Q 001334 368 TIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSVLDGFNV 446 (1097)
Q Consensus 368 nIRV~cRVRP~~~~E~~~~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~svLdGyNv 446 (1097)
+|+|||||||+...|.....++..+.+++.+.+.++ ...+.|.||+||+++++|++||+. +.|+|+.+++|||+
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~-----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~ 75 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEES-----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNG 75 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCC-----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCce
Confidence 699999999999887654444544545545555443 346899999999999999999998 59999999999999
Q ss_pred eEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCCccccee
Q 001334 447 CIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIR 526 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~l~Ir 526 (1097)
||||||||||||||||+|+. .++||+||++++||..+.... ...|.|+|||+|||||+|||||.+.. ..+.++
T Consensus 76 ~i~ayG~tgSGKT~T~~G~~----~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~--~~l~i~ 148 (321)
T cd01374 76 TIFAYGQTSSGKTFTMSGDE----QEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP--QELRIR 148 (321)
T ss_pred eEEeecCCCCCCceeccCCC----CCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC--CCceEE
Confidence 99999999999999999964 678999999999999887655 45899999999999999999997664 567888
Q ss_pred cccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeecc---CceeeeeEEEeec
Q 001334 527 NTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVT---GSILKGCLHLVDL 603 (1097)
Q Consensus 527 ~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~---g~~~~skL~LVDL 603 (1097)
+++. .|+++.|++++.|.|++|+.++|..|.++|++++|.+|.+|||||+||+|+|.+.+... +....|+|+||||
T Consensus 149 ~~~~-~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDL 227 (321)
T cd01374 149 EDPN-KGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDL 227 (321)
T ss_pred ECCC-CCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEEC
Confidence 8765 68999999999999999999999999999999999999999999999999999887654 5678899999999
Q ss_pred CCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCC--CCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcHH
Q 001334 604 AGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKS--AHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIG 681 (1097)
Q Consensus 604 AGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~--~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ 681 (1097)
|||||..+.+ .+.+++|+.+||+||++|++||.+|++++ .|||||+||||+||+|+||||++|+||+||||...+++
T Consensus 228 AGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~ 306 (321)
T cd01374 228 AGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVE 306 (321)
T ss_pred CCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHH
Confidence 9999999988 89999999999999999999999999985 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 001334 682 ETISTLKFAERVSSI 696 (1097)
Q Consensus 682 ETLsTLrFAsRak~I 696 (1097)
||++||+||+|+++|
T Consensus 307 eTl~TL~~a~r~~~i 321 (321)
T cd01374 307 ETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999876
No 20
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-74 Score=668.70 Aligned_cols=355 Identities=40% Similarity=0.596 Sum_probs=310.3
Q ss_pred CCCEEEEEEeCCCCCCCCCCC--CceEEecCCCcEEEeCC-CCC--C-CCCceeEeeceeeCCC-------CChHHHHhh
Q 001334 366 KGTIRVYCRVRPFLPGQSNGQ--STVDYIGENGNIMVTNP-FKQ--G-KDARKMFLFNKVFAPN-------VSQEQIYVD 432 (1097)
Q Consensus 366 KGnIRV~cRVRP~~~~E~~~~--s~v~~~~~~~~i~I~~p-~~~--g-k~~~k~F~FD~VF~~~-------atQeeVF~e 432 (1097)
..+|||.+||||+..+|.+-. +.+.+... ..++..| .+. + ....|+|.||++|.+. +.|+.||..
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~--q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~ 80 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKN--QTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKC 80 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccC--ceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHh
Confidence 368999999999999886543 33444322 3333333 221 1 1457899999999874 679999988
Q ss_pred h-hhhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhh-cCCceEEEEEEEEEEEeccee
Q 001334 433 T-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNT-RGDMIKYEVGVQMIEIYNEQV 510 (1097)
Q Consensus 433 v-~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~-~~~~~~y~V~VS~lEIYNE~V 510 (1097)
+ .-+|+++|+|||+||||||||||||||||+|.. +.+|||||.+..||..+.. ......|+|.|||+|||||++
T Consensus 81 lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~----~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv 156 (1714)
T KOG0241|consen 81 LGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTA----EQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKV 156 (1714)
T ss_pred cchHHHHHHhhccceeeEEecccCCCceeEeeccC----CCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcch
Confidence 5 778999999999999999999999999999954 7889999999999997654 355678999999999999999
Q ss_pred eeccCCCCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeee--
Q 001334 511 RDLLVSDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGREL-- 588 (1097)
Q Consensus 511 ~DLL~~~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~-- 588 (1097)
||||.|.++...+.++++.- .|.||.||++..|+|++|+..+|..|+++|++++|.||..|||||+||.|.|++.-.
T Consensus 157 ~DLLdPk~ssqtlkVrehsv-lGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ 235 (1714)
T KOG0241|consen 157 RDLLDPKGSSQTLKVREHSV-LGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDL 235 (1714)
T ss_pred hhhhCCCCCcceeEEeeccc-ccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEecc
Confidence 99999999999999999864 799999999999999999999999999999999999999999999999999987533
Q ss_pred ccC--ceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhh------CCCCccCCCCchhhhhhhc
Q 001334 589 VTG--SILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQ------KSAHIPYRNSKLTQVLQDS 660 (1097)
Q Consensus 589 ~~g--~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~------k~~hIPYRdSKLTrLLqDS 660 (1097)
.+| ....|+|.|||||||||+.++++.|+|++|+.+||+||++||.||+||+. ++++||||||.||+||||+
T Consensus 236 ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~ 315 (1714)
T KOG0241|consen 236 KTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDN 315 (1714)
T ss_pred ccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhh
Confidence 232 23578999999999999999999999999999999999999999999986 2469999999999999999
Q ss_pred cCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhccccccccccccc-hhHHHHHHHHHHHHHHHHHHH
Q 001334 661 LGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKE-SGEIRELREEISNLKQTLEKK 727 (1097)
Q Consensus 661 LGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~~~~~~~-~~~i~eLreEI~~LK~~L~~~ 727 (1097)
|||||+|+||+||||+.++|+|||+|||||.||+.|++.+..+.++ ...|++|++|++.|+.+|+++
T Consensus 316 LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~a 383 (1714)
T KOG0241|consen 316 LGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQA 383 (1714)
T ss_pred cCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999998877765 467899999999999888763
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=6.1e-73 Score=634.32 Aligned_cols=320 Identities=43% Similarity=0.629 Sum_probs=282.0
Q ss_pred CEEEEEEeCCCCCCCCCCCCceEEecCCCcEEEeCCCCC------CCCCceeEeeceeeCCCCChHHHHhhh-hhhHhhh
Q 001334 368 TIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQ------GKDARKMFLFNKVFAPNVSQEQIYVDT-QPLVRSV 440 (1097)
Q Consensus 368 nIRV~cRVRP~~~~E~~~~s~v~~~~~~~~i~I~~p~~~------gk~~~k~F~FD~VF~~~atQeeVF~ev-~PLV~sv 440 (1097)
.|+|||||||+...+. ..+.+..++..+.+..|... .....+.|.||+||++ ++|++||+.+ .|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQG---SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCC---ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 4899999999987432 23555545445555443221 1224568999999999 9999999985 8999999
Q ss_pred cCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCC--
Q 001334 441 LDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDG-- 518 (1097)
Q Consensus 441 LdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~-- 518 (1097)
++|||+||||||||||||||||+|+.. ...++||+||++++||+.++... ...|.|++||+|||||+|||||.+..
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 154 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTE-SYKDRGLIPRALEQVFREVAMRA-TKTYTVHVSYLEIYNEQLYDLLGDTPEA 154 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCC-cccCCchHHHHHHHHHHHHHhcc-CcceEEEEEEEEEECCEeecCCCCCccc
Confidence 999999999999999999999999754 23578999999999999887665 45799999999999999999998764
Q ss_pred --CCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeee--eccCcee
Q 001334 519 --SNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRE--LVTGSIL 594 (1097)
Q Consensus 519 --~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~--~~~g~~~ 594 (1097)
....+.+++++. ++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.+ .......
T Consensus 155 ~~~~~~l~i~e~~~-~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~ 233 (334)
T cd01375 155 LESLPAVTILEDSE-QNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVR 233 (334)
T ss_pred cccCCceEEEEcCC-CCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceE
Confidence 235678888764 78999999999999999999999999999999999999999999999999999873 3445577
Q ss_pred eeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCC-CCccCCCCchhhhhhhccCCCceeeEEEec
Q 001334 595 KGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKS-AHIPYRNSKLTQVLQDSLGGHAKTLMFVHI 673 (1097)
Q Consensus 595 ~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~-~hIPYRdSKLTrLLqDSLGGnSkTlMIa~I 673 (1097)
.|+|+|||||||||..++++.+.+++|+..||+||++|++||.+|++++ .||||||||||+||+|+|||||+|+||+||
T Consensus 234 ~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~v 313 (334)
T cd01375 234 LSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATI 313 (334)
T ss_pred EEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence 8999999999999999999999999999999999999999999999988 999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHhc
Q 001334 674 NPEHNAIGETISTLKFAERVS 694 (1097)
Q Consensus 674 SP~~~~~~ETLsTLrFAsRak 694 (1097)
||...+++|||+||+||+|++
T Consensus 314 sp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 314 WVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999985
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.6e-69 Score=602.48 Aligned_cols=322 Identities=48% Similarity=0.734 Sum_probs=289.8
Q ss_pred CEEEEEEeCCCCCCCCCCCCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhhh-hhhHhhhcCCcce
Q 001334 368 TIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVDT-QPLVRSVLDGFNV 446 (1097)
Q Consensus 368 nIRV~cRVRP~~~~E~~~~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~ev-~PLV~svLdGyNv 446 (1097)
+|+|||||||+...+......+..+.++..+.+.++........+.|.||+||+++++|++||+.+ .|+|+++++|||+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 699999999998776444333333444467777665433334568999999999999999999985 8999999999999
Q ss_pred eEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCC-ceEEEEEEEEEEEecceeeeccCCCCCCcccce
Q 001334 447 CIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGD-MIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDI 525 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~-~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~l~I 525 (1097)
||||||||||||||||+|+. .++||+||++++||+.+..... ...|.|++||+|||+|+|+|||.+......+.+
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~----~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i 156 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSP----KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSL 156 (328)
T ss_pred eEEEecCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEE
Confidence 99999999999999999965 6789999999999998877653 568999999999999999999987644667888
Q ss_pred ecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCc--eeeeeEEEeec
Q 001334 526 RNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGS--ILKGCLHLVDL 603 (1097)
Q Consensus 526 r~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~--~~~skL~LVDL 603 (1097)
+++.. +|+++.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|...+..... ...|+|+||||
T Consensus 157 ~~~~~-~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDL 235 (328)
T cd00106 157 REDPK-GGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDL 235 (328)
T ss_pred EEcCC-CCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEEC
Confidence 88765 7899999999999999999999999999999999999999999999999999988876654 78999999999
Q ss_pred CCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCC--CCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcHH
Q 001334 604 AGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKS--AHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIG 681 (1097)
Q Consensus 604 AGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~--~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ 681 (1097)
||+|+..+.+..+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||||+|||+++|+||+||+|...+++
T Consensus 236 aGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~ 315 (328)
T cd00106 236 AGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYD 315 (328)
T ss_pred CCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHH
Confidence 9999999999999999999999999999999999999988 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 001334 682 ETISTLKFAERVS 694 (1097)
Q Consensus 682 ETLsTLrFAsRak 694 (1097)
||++||+||+|++
T Consensus 316 eTl~tL~~a~r~~ 328 (328)
T cd00106 316 ETLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999985
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=6.8e-69 Score=599.95 Aligned_cols=326 Identities=49% Similarity=0.738 Sum_probs=292.9
Q ss_pred CEEEEEEeCCCCCCCCC--CCCceEEecCCC-cEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhhh-hhhHhhhcCC
Q 001334 368 TIRVYCRVRPFLPGQSN--GQSTVDYIGENG-NIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVDT-QPLVRSVLDG 443 (1097)
Q Consensus 368 nIRV~cRVRP~~~~E~~--~~s~v~~~~~~~-~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~ev-~PLV~svLdG 443 (1097)
+|+|+|||||+...|.. ..+++.+.+.++ .+.+.++. .....+.|.||+||+++++|++||+.+ .|+|+.+++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK--NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC--CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 69999999999887643 344555554443 45554432 234568899999999999999999985 8999999999
Q ss_pred cceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCCccc
Q 001334 444 FNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRL 523 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~l 523 (1097)
+|+||||||+|||||||||+|+. +++||+||++++||..+....+...|.|+|||+|||||+|+|||.+. ...+
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~~----~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~--~~~l 152 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGTP----DSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS--PKKL 152 (335)
T ss_pred CceeEEEeCCCCCCCceEecCCC----CCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--CCCc
Confidence 99999999999999999999964 56799999999999998877767799999999999999999999765 4567
Q ss_pred ceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEee--eeccCceeeeeEEEe
Q 001334 524 DIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGR--ELVTGSILKGCLHLV 601 (1097)
Q Consensus 524 ~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~--~~~~g~~~~skL~LV 601 (1097)
.+++++. .|+++.|++++.|.|++|+.++|..|.++|.+++|.+|..|||||+||+|+|.+. +...+....|+|+||
T Consensus 153 ~i~~~~~-~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~V 231 (335)
T smart00129 153 EIREDKK-GGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLV 231 (335)
T ss_pred EEEECCC-CCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEE
Confidence 8888764 6899999999999999999999999999999999999999999999999999966 445666789999999
Q ss_pred ecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhh--CCCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCc
Q 001334 602 DLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQ--KSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNA 679 (1097)
Q Consensus 602 DLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~--k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~ 679 (1097)
||||+|+..+.++.|.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|||+++|+||+||||...+
T Consensus 232 DLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~ 311 (335)
T smart00129 232 DLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSN 311 (335)
T ss_pred ECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccc
Confidence 9999999999999999999999999999999999999998 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccc
Q 001334 680 IGETISTLKFAERVSSIELGAAR 702 (1097)
Q Consensus 680 ~~ETLsTLrFAsRak~I~~~~~~ 702 (1097)
++||++||+||+++++|++.|.+
T Consensus 312 ~~eTl~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 312 LEETLSTLRFASRAKEIKNKAIV 334 (335)
T ss_pred hHHHHHHHHHHHHHhhcccCCCc
Confidence 99999999999999999988754
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2.1e-69 Score=603.12 Aligned_cols=321 Identities=44% Similarity=0.689 Sum_probs=276.6
Q ss_pred EeCCCCCCCCCCCCc--eEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHhhhcCCcceeEEe
Q 001334 374 RVRPFLPGQSNGQST--VDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSVLDGFNVCIFA 450 (1097)
Q Consensus 374 RVRP~~~~E~~~~s~--v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~svLdGyNvcIfA 450 (1097)
||||++..|...... +......................+.|.||+||+++++|++||+. +.|+|+++++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 899999877544332 22221111111111112223456889999999999999999998 599999999999999999
Q ss_pred eccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCc--eEEEEEEEEEEEecceeeeccCCCC--CCccccee
Q 001334 451 YGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDM--IKYEVGVQMIEIYNEQVRDLLVSDG--SNRRLDIR 526 (1097)
Q Consensus 451 YGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~--~~y~V~VS~lEIYNE~V~DLL~~~~--~~~~l~Ir 526 (1097)
||||||||||||+|+ .....+||+||++++||..+...... +.|.|+|||+|||||+|+|||.+.. ....+.++
T Consensus 81 yG~tgSGKT~Tm~G~--~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~ 158 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGS--NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIR 158 (335)
T ss_dssp EESTTSSHHHHHTBS--TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEE
T ss_pred ecccccccccccccc--ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccccccccee
Confidence 999999999999997 23467899999999999998887664 8999999999999999999998873 34578999
Q ss_pred cccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCc----eeeeeEEEee
Q 001334 527 NTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGS----ILKGCLHLVD 602 (1097)
Q Consensus 527 ~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~----~~~skL~LVD 602 (1097)
++...+.++|.|++++.|.+.+|+..+|..|.++|.++.|.+|..|||||+||+|+|.+.+..... ...|+|+|||
T Consensus 159 ~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vD 238 (335)
T PF00225_consen 159 EDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVD 238 (335)
T ss_dssp EETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEE
T ss_pred eccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeee
Confidence 887633399999999999999999999999999999999999999999999999999998876554 4789999999
Q ss_pred cCCCcccccchh-hhhhHHHHHHHHhhHHHHHHHHHHHhhC--CCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCc
Q 001334 603 LAGSERVDKSEA-VGERLKEAQHINRSLSALGDVISALAQK--SAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNA 679 (1097)
Q Consensus 603 LAGSER~~ks~a-~G~RlkEa~~INkSLsALg~VI~ALa~k--~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~ 679 (1097)
|||+|+..+.++ .+.+++|+..||+||.+|++||.+|+++ ..|||||+||||+||+|+|||||+|+||+||+|...+
T Consensus 239 LaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~ 318 (335)
T PF00225_consen 239 LAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSED 318 (335)
T ss_dssp EEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGG
T ss_pred cccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCcccc
Confidence 999999998886 4889999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccc
Q 001334 680 IGETISTLKFAERVSSI 696 (1097)
Q Consensus 680 ~~ETLsTLrFAsRak~I 696 (1097)
++||++||+||+++++|
T Consensus 319 ~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 319 YEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999986
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.9e-65 Score=588.89 Aligned_cols=329 Identities=38% Similarity=0.604 Sum_probs=283.1
Q ss_pred cCCCCEEEEEEeCCCCCCCCCCCCceEEecCCCcEEEeCCC-------CCCCCCceeEeeceeeCCCCChHHHHhh-hhh
Q 001334 364 DLKGTIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPF-------KQGKDARKMFLFNKVFAPNVSQEQIYVD-TQP 435 (1097)
Q Consensus 364 elKGnIRV~cRVRP~~~~E~~~~s~v~~~~~~~~i~I~~p~-------~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~P 435 (1097)
+.+..|.|||||||+.+ ..+...++.++.+ .++++..|. ..+....+.|.|.+||+|+++|.+||+. +.|
T Consensus 28 ~~~d~v~v~~rvrP~~~-~~~~~g~l~v~n~-~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSD-ASEDEGCLRVINE-ETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred hhhcchheeEeecCCCC-CccccceEEEecc-ceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 45788999999999886 2334456666644 455554442 1333456789999999999999999998 599
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhc-------------------------
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTR------------------------- 490 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~------------------------- 490 (1097)
+|.+++.|.|..||+||.|||||||||+|++ ..+||+||+++-||..+..+
T Consensus 106 lV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~----~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL 181 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVTGSGKTYTMTGTP----DRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALL 181 (809)
T ss_pred HHHHHHcccceeEEEeeccCCCceEEeecCC----CCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999965 56799999999999753321
Q ss_pred ---------------------------------------CCceEEEEEEEEEEEecceeeeccCCCCCCcc----cceec
Q 001334 491 ---------------------------------------GDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRR----LDIRN 527 (1097)
Q Consensus 491 ---------------------------------------~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~----l~Ir~ 527 (1097)
..++.|.|+|||+|||||-|||||.+.+.... ..+++
T Consensus 182 ~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~ 261 (809)
T KOG0247|consen 182 QLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLRE 261 (809)
T ss_pred hhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhh
Confidence 02356999999999999999999976543322 23445
Q ss_pred ccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeec--cCceeeeeEEEeecCC
Q 001334 528 TAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELV--TGSILKGCLHLVDLAG 605 (1097)
Q Consensus 528 ~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~--~g~~~~skL~LVDLAG 605 (1097)
+. .+..||.|+++|.|+|.+|++.||+.|.++|++++|.+|..|||||+||+|.+.+.... ++.+..|.|.||||||
T Consensus 262 d~-~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAG 340 (809)
T KOG0247|consen 262 DT-NGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAG 340 (809)
T ss_pred cc-CCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeeccc
Confidence 44 35589999999999999999999999999999999999999999999999999877655 5667889999999999
Q ss_pred CcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhC-----CCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcH
Q 001334 606 SERVDKSEAVGERLKEAQHINRSLSALGDVISALAQK-----SAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAI 680 (1097)
Q Consensus 606 SER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k-----~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~ 680 (1097)
|||..++++.|.||+||.+||.||.+||.||.+|.++ +.+|||||||||+++|.+|.|..+..||+||+|.+.+|
T Consensus 341 SERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~Y 420 (809)
T KOG0247|consen 341 SERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDY 420 (809)
T ss_pred chhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhH
Confidence 9999999999999999999999999999999999853 36899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccc
Q 001334 681 GETISTLKFAERVSSIELG 699 (1097)
Q Consensus 681 ~ETLsTLrFAsRak~I~~~ 699 (1097)
+|+++.|+||+-+..|.+.
T Consensus 421 dEnl~vlkFaeiaq~v~v~ 439 (809)
T KOG0247|consen 421 DENLNVLKFAEIAQEVEVA 439 (809)
T ss_pred HHHHHHHHHHHhccccccc
Confidence 9999999999999998654
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.6e-64 Score=568.06 Aligned_cols=326 Identities=34% Similarity=0.495 Sum_probs=276.4
Q ss_pred CCEEEEEEeCCCCCCCCCCCC-ceEEecCCCcEEEeCCCCCCCC-----CceeEeeceeeCCCCChHHHHhh-hhhhHhh
Q 001334 367 GTIRVYCRVRPFLPGQSNGQS-TVDYIGENGNIMVTNPFKQGKD-----ARKMFLFNKVFAPNVSQEQIYVD-TQPLVRS 439 (1097)
Q Consensus 367 GnIRV~cRVRP~~~~E~~~~s-~v~~~~~~~~i~I~~p~~~gk~-----~~k~F~FD~VF~~~atQeeVF~e-v~PLV~s 439 (1097)
-.|.|+||-||+...|..... .|.-++..+.+++ +..+..-+ ....|.||++|+..++++.||.. ++|||..
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~v-HEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~ 286 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVV-HEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKT 286 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEe-eccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHH
Confidence 359999999999988765432 2333334434444 43333222 24679999999999999999987 6999999
Q ss_pred hcCCcceeEEeeccCCCCcceeecCCCCCc--ccccCchHHHHHHHHHHhhhc-CCceEEEEEEEEEEEecceeeeccCC
Q 001334 440 VLDGFNVCIFAYGQTGSGKTYTMSGPDLTA--EETWGVNYRALRDLFQISNTR-GDMIKYEVGVQMIEIYNEQVRDLLVS 516 (1097)
Q Consensus 440 vLdGyNvcIfAYGQTGSGKTyTM~G~~~~~--~e~~GIipRal~~LF~~~~~~-~~~~~y~V~VS~lEIYNE~V~DLL~~ 516 (1097)
+|+|--+|+||||||||||||||-|.-... ....||.-++.+|+|..+... -....+.|+++|+|||+.+|||||+.
T Consensus 287 IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~ 366 (676)
T KOG0246|consen 287 IFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND 366 (676)
T ss_pred HHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc
Confidence 999999999999999999999998853221 234699999999999987652 23457899999999999999999964
Q ss_pred CCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeee
Q 001334 517 DGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKG 596 (1097)
Q Consensus 517 ~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~s 596 (1097)
.+++.+.++.. ..+.|.||++..|.+.+|++.||+.|+..|+++.|..|..|||||+||+|.+... .+....|
T Consensus 367 ---k~KLrvLEDg~-QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~---~~~k~hG 439 (676)
T KOG0246|consen 367 ---KKKLRVLEDGN-QQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH---GEFKLHG 439 (676)
T ss_pred ---ccceEEeecCC-ceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC---CcceeEe
Confidence 35566666643 4588999999999999999999999999999999999999999999999998643 2357899
Q ss_pred eEEEeecCCCcc-cccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCC-CceeeEEEecC
Q 001334 597 CLHLVDLAGSER-VDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGG-HAKTLMFVHIN 674 (1097)
Q Consensus 597 kL~LVDLAGSER-~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGG-nSkTlMIa~IS 674 (1097)
++.||||||+|| ++.+.+..+...|++.|||||+||..||.||.+.+.|+|||.||||++|+|||-| ||+|+||+|||
T Consensus 440 KfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~IS 519 (676)
T KOG0246|consen 440 KFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATIS 519 (676)
T ss_pred EEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeC
Confidence 999999999999 4566777788899999999999999999999999999999999999999999988 99999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhccccccc
Q 001334 675 PEHNAIGETISTLKFAERVSSIELGA 700 (1097)
Q Consensus 675 P~~~~~~ETLsTLrFAsRak~I~~~~ 700 (1097)
|...+++.||+|||||.||+......
T Consensus 520 Pg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 520 PGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred CCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999876543
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.4e-65 Score=603.54 Aligned_cols=351 Identities=36% Similarity=0.546 Sum_probs=300.8
Q ss_pred eCCCCCCCCCCC--CceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHhhhcCCcceeEEee
Q 001334 375 VRPFLPGQSNGQ--STVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSVLDGFNVCIFAY 451 (1097)
Q Consensus 375 VRP~~~~E~~~~--s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~svLdGyNvcIfAY 451 (1097)
|||+...|...+ .|+.+.+.+..+.+. ....|+||+||.....|.++|+. +.|+++.+++|||++++||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig--------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlay 72 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG--------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAY 72 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec--------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeee
Confidence 689887765443 345555555555553 34689999999999999999998 6999999999999999999
Q ss_pred ccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCCcccceecccCC
Q 001334 452 GQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQA 531 (1097)
Q Consensus 452 GQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~l~Ir~~~~~ 531 (1097)
|||||||||||.+.+....++.|||||++..+|..+..... ..|.|.|+|+|||+|.|+|||.++.....+.+++ ..
T Consensus 73 gQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e--~~ 149 (913)
T KOG0244|consen 73 GQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE--PK 149 (913)
T ss_pred cccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceeccc--cC
Confidence 99999999999876544444469999999999998876654 6899999999999999999998655444455555 23
Q ss_pred CCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeee-ccCceeeeeEEEeecCCCcccc
Q 001334 532 NGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGREL-VTGSILKGCLHLVDLAGSERVD 610 (1097)
Q Consensus 532 ~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~-~~g~~~~skL~LVDLAGSER~~ 610 (1097)
+++.+.|++++.|.+..++...|..|.-.|++++|+||..|||||+||+|.+.+... ......+++|+|||||||||.+
T Consensus 150 g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~k 229 (913)
T KOG0244|consen 150 GEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVK 229 (913)
T ss_pred CceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccc
Confidence 569999999999999999999999999999999999999999999999999987443 3344577999999999999999
Q ss_pred cchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCC--CccCCCCchhhhhhhccCCCceeeEEEecCCCCCcHHHHHHHHH
Q 001334 611 KSEAVGERLKEAQHINRSLSALGDVISALAQKSA--HIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLK 688 (1097)
Q Consensus 611 ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~--hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ETLsTLr 688 (1097)
+++++|+|++|+.+||.+|++||+||+||..... |||||+||||+||||+||||+.|+||+||||+..++.||++||+
T Consensus 230 kT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ 309 (913)
T KOG0244|consen 230 KTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLR 309 (913)
T ss_pred ccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHH
Confidence 9999999999999999999999999999987554 99999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccccc-cchhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHh
Q 001334 689 FAERVSSIELGAARSN-KESGEIRELREEISNLKQTLEKKE-----AELEQLRR 736 (1097)
Q Consensus 689 FAsRak~I~~~~~~~~-~~~~~i~eLreEI~~LK~~L~~~e-----~eleqlr~ 736 (1097)
||.|++.|++.++.+. +...++..|+.||..|+.+|.... ++++.++.
T Consensus 310 ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~ 363 (913)
T KOG0244|consen 310 YADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPF 363 (913)
T ss_pred HhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhh
Confidence 9999999999998877 445677777777777777776553 45555443
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-59 Score=558.56 Aligned_cols=313 Identities=42% Similarity=0.669 Sum_probs=281.5
Q ss_pred ceeEeeceeeCCCCChHHHHhh-hhhhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhh
Q 001334 411 RKMFLFNKVFAPNVSQEQIYVD-TQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNT 489 (1097)
Q Consensus 411 ~k~F~FD~VF~~~atQeeVF~e-v~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~ 489 (1097)
...|.||+||++.++|++||+. +.|+++++++|||+||||||||||||||||.|.. +.+||||+++.+||+.+..
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~----~~~Gii~~~l~~lf~~l~~ 130 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTE----EEPGIIPLSLKELFSKLED 130 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCc----cccchHHHHHHHHHHHHHh
Confidence 5679999999999999999988 6999999999999999999999999999999954 6789999999999998887
Q ss_pred cCCceEEEEEEEEEEEecceeeeccCCCCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCc
Q 001334 490 RGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALN 569 (1097)
Q Consensus 490 ~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N 569 (1097)
......|.|.+||+|||||+++|||.+.... +.++++. ..|++|.+++++.+.+.+|++.+|..|..+|+++.|.+|
T Consensus 131 ~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~--~~~~~~~-~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n 207 (568)
T COG5059 131 LSMTKDFAVSISYLEIYNEKIYDLLSPNEES--LNIREDS-LLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEIN 207 (568)
T ss_pred cccCcceeeEeehhHHHhhHHHhhccCcccc--ccccccC-CCceEeecceEEecCChHHHHHHHHHhhhhcccccchhc
Confidence 7766789999999999999999999765432 4455554 478999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEEeeeeccCceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhh--CCCCcc
Q 001334 570 ERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQ--KSAHIP 647 (1097)
Q Consensus 570 ~~SSRSHaIftI~V~~~~~~~g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~--k~~hIP 647 (1097)
..|||||+||++++.+.+...+....++|+||||||||++..++..+.|++|+..||+||.+||+||.+|.. +..|||
T Consensus 208 ~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ip 287 (568)
T COG5059 208 DESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIP 287 (568)
T ss_pred cccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccc
Confidence 999999999999999998777777778999999999999999999999999999999999999999999997 788999
Q ss_pred CCCCchhhhhhhccCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhccccccccccc--cchhHHHHHHHHHHHHHHHHH
Q 001334 648 YRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSN--KESGEIRELREEISNLKQTLE 725 (1097)
Q Consensus 648 YRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~~~~~--~~~~~i~eLreEI~~LK~~L~ 725 (1097)
||+||||||||++|||+++|.|||||+|...+++||++||+||.|+++|++.+..+. .....+.+++..+...+....
T Consensus 288 yReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 367 (568)
T COG5059 288 YRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIE 367 (568)
T ss_pred hhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999998766553 334566666666666666555
Q ss_pred HHHHH
Q 001334 726 KKEAE 730 (1097)
Q Consensus 726 ~~e~e 730 (1097)
....+
T Consensus 368 ~~~~~ 372 (568)
T COG5059 368 ILVFR 372 (568)
T ss_pred hHHHH
Confidence 54443
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=4.2e-50 Score=415.56 Aligned_cols=176 Identities=57% Similarity=0.890 Sum_probs=167.6
Q ss_pred HHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecc
Q 001334 429 IYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNE 508 (1097)
Q Consensus 429 VF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE 508 (1097)
||+.+.|+|+.+++|||+||||||||||||||||+|++ +++||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~----~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR----EGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCC----CCCCcchHHHHH--------------------------
Confidence 99986699999999999999999999999999999975 678999999987
Q ss_pred eeeeccCCCCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeee
Q 001334 509 QVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGREL 588 (1097)
Q Consensus 509 ~V~DLL~~~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~ 588 (1097)
+++++..|.++|++++|.+|+.|||||+||+|+|.+.+.
T Consensus 58 -----------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~ 96 (186)
T cd01363 58 -----------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNA 96 (186)
T ss_pred -----------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeec
Confidence 788999999999999999999999999999999998776
Q ss_pred cc---CceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCc
Q 001334 589 VT---GSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHA 665 (1097)
Q Consensus 589 ~~---g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnS 665 (1097)
.. +....++|+||||||||+.++++..+++++|+..||+||++|++||.+|++++.|||||+||||+||||+|||||
T Consensus 97 ~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~ 176 (186)
T cd01363 97 LASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNS 176 (186)
T ss_pred CCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCC
Confidence 54 556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEecCC
Q 001334 666 KTLMFVHINP 675 (1097)
Q Consensus 666 kTlMIa~ISP 675 (1097)
+|+||+||||
T Consensus 177 ~t~~i~~vsP 186 (186)
T cd01363 177 RTLMVACISP 186 (186)
T ss_pred eEEEEEEeCc
Confidence 9999999998
No 30
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=99.79 E-value=7.6e-20 Score=189.27 Aligned_cols=97 Identities=29% Similarity=0.414 Sum_probs=84.5
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC---ceecCccc
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL---TFEASDLE 89 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~---lFet~DL~ 89 (1097)
+...||.++|+||+|||+|+|+|.|+++ ++++.|.+. |.|||||++||.||+.+|++ +|+|+|||
T Consensus 43 ~~~~~f~~~LKDG~iLCkl~N~l~p~~~-~~~~~s~~~-----------f~qmEnIs~Fi~a~~~ygv~~~d~FqtvDLf 110 (193)
T KOG2046|consen 43 PARGDFQDLLKDGVILCKLINKLYPGVV-KKINESKMA-----------FVQMENISNFIKAAKKYGVPEVDLFQTVDLF 110 (193)
T ss_pred CcccCHHHHHcchHHHHHHHHHhCcCcc-ccccccccc-----------HHHHHHHHHHHHHHHhcCCChhhcccccccc
Confidence 4477899999999999999999999877 555577777 99999999999999999776 99999999
Q ss_pred ccCChhhHHHHHHHHhhhhhhhccCCCccccc
Q 001334 90 KGGSSSKVVDCILCLKGYYEWKQAGGIGVWRY 121 (1097)
Q Consensus 90 e~kn~~kVv~cLlaLks~~~~K~~Gg~g~w~~ 121 (1097)
|++|+.+|+.||++|.+++..+...+...|.-
T Consensus 111 E~kd~~~V~vtL~aLa~~a~~~~~~~~~~~g~ 142 (193)
T KOG2046|consen 111 EGKDMAQVQVTLLALARKAQKKGLFSGPGIGP 142 (193)
T ss_pred cCCCHHHHHHHHHHHHHHHhhccccCCCCcCC
Confidence 99999999999999999999886444434443
No 31
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=99.63 E-value=1.5e-16 Score=157.71 Aligned_cols=99 Identities=19% Similarity=0.383 Sum_probs=87.7
Q ss_pred CCCccCCCCCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCC
Q 001334 1 MDKGASGTLPKEPSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQL 80 (1097)
Q Consensus 1 ie~v~~~~l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~ 80 (1097)
|+.++++.| .++.||.+.|+|||+||+++|..-|+.| .+..++|+ |.+||||+.||...+.+++
T Consensus 22 ie~~l~~k~---~ppgdll~~lkdGv~lCril~ea~~~~I--~yKeSkmp-----------FVQmenIs~Fin~~~k~~v 85 (178)
T COG5199 22 IETVLGEKF---EPPGDLLSLLKDGVRLCRILNEASPLDI--KYKESKMP-----------FVQMENISSFINGLKKLRV 85 (178)
T ss_pred HHHHHHhhh---CCcccHHHHHhcchHHHHHHhhcCcccc--eecccCCc-----------eeeHHHHHHHHHHHHHhCC
Confidence 456777888 3456799999999999999999999998 44555677 9999999999999999988
Q ss_pred C---ceecCcccccCChhhHHHHHHHHhhhhhhhccCC
Q 001334 81 L---TFEASDLEKGGSSSKVVDCILCLKGYYEWKQAGG 115 (1097)
Q Consensus 81 ~---lFet~DL~e~kn~~kVv~cLlaLks~~~~K~~Gg 115 (1097)
| +|+|+||||.+|..+|+.||++|+.|+..+-++.
T Consensus 86 pe~elFQT~DLFE~kd~~qV~~~l~slSRya~K~~~~~ 123 (178)
T COG5199 86 PEYELFQTNDLFEAKDLRQVVICLYSLSRYAQKERMFS 123 (178)
T ss_pred CHHHHHHhhhHHhhcCHHHHHHHHHHHHHHHHHhcCCC
Confidence 8 9999999999999999999999999999887653
No 32
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.41 E-value=1.7e-13 Score=128.52 Aligned_cols=85 Identities=26% Similarity=0.450 Sum_probs=75.0
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC-c-eecCcccc
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL-T-FEASDLEK 90 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~-l-Fet~DL~e 90 (1097)
+..+||...|+||++||+|+|.+.|+.++.....|. ..|.+++||..||++|+++|++ . |++.||++
T Consensus 20 ~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~-----------~~~~~~~Ni~~~l~~~~~~gi~~~~~~~~Dl~~ 88 (107)
T cd00014 20 VTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPL-----------SRFKRLENINLALNFAEKLGVPVVNFDAEDLVE 88 (107)
T ss_pred ccHHHHHHHHhchHHHHHHHHHHCcccccccccccc-----------chhhHHHHHHHHHHHHHHcCCceeccCHHHHhh
Confidence 468999999999999999999999999965443332 3499999999999999999998 3 99999999
Q ss_pred cCChhhHHHHHHHHhhhh
Q 001334 91 GGSSSKVVDCILCLKGYY 108 (1097)
Q Consensus 91 ~kn~~kVv~cLlaLks~~ 108 (1097)
.+|..+|+.||++|..++
T Consensus 89 ~~n~~~vl~~l~~l~~~~ 106 (107)
T cd00014 89 DGDEKLVLGLLWSLIRKF 106 (107)
T ss_pred CCCceeeHHHHHHHHHhh
Confidence 999999999999998765
No 33
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=99.38 E-value=2.8e-13 Score=156.22 Aligned_cols=98 Identities=26% Similarity=0.348 Sum_probs=82.8
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCcc--ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhc----CCCceecC
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAVL--KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDM----QLLTFEAS 86 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV~--kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~l----g~~lFet~ 86 (1097)
...=||+++|||||+||+|+|.+.|++|. +|.-.|+| |+|.|..||+.||.+|.+. ..++|++.
T Consensus 28 a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQm----------SqFLClkNIrtFl~~C~~~Fglr~seLF~af 97 (865)
T KOG2996|consen 28 AQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQM----------SQFLCLKNIRTFLMFCCEKFGLRDSELFEAF 97 (865)
T ss_pred chHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCc----------cchhhHhhHHHHHHHHHHHhCCchhhhcchh
Confidence 44569999999999999999999999997 45556655 4799999999999999876 44599999
Q ss_pred cccccCChhhHHHHHHHHhhhhhhhccCCCccccc
Q 001334 87 DLEKGGSSSKVVDCILCLKGYYEWKQAGGIGVWRY 121 (1097)
Q Consensus 87 DL~e~kn~~kVv~cLlaLks~~~~K~~Gg~g~w~~ 121 (1097)
|||+..+|.||+.+|+.| +++-..+.-|+.||+.
T Consensus 98 DLfdv~dFgKVi~tlS~L-S~t~ial~rGi~PFPt 131 (865)
T KOG2996|consen 98 DLFDVRDFGKVIKTLSRL-SHTPIALNRGIRPFPT 131 (865)
T ss_pred hhhhhhhHHHHHHHHHHh-ccChHHHhcCCCCCCC
Confidence 999999999999999999 5666666666666665
No 34
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.23 E-value=8.1e-12 Score=116.06 Aligned_cols=81 Identities=30% Similarity=0.445 Sum_probs=70.0
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCccceecC-chhhhhcccchhhhhhHHHhhHHHHHHHHHhcCC--CceecCccc
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAVLKVVEN-PIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQL--LTFEASDLE 89 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~-p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~--~lFet~DL~ 89 (1097)
...+||...|+||++||+|+|.+.|+.+++.... |. ..|++++||..||.+|+++|. ..|++.||+
T Consensus 19 ~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~-----------~~~~~~~Ni~~~l~~~~~~g~~~~~~~~~Dl~ 87 (103)
T smart00033 19 PPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASL-----------SRFKKIENINLALSFAEKLGGKLVLFEPEDLV 87 (103)
T ss_pred CcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccc-----------cHHHHHHhHHHHHHHHHHcCCeeeccCHHHHh
Confidence 6678999999999999999999999999754322 32 349999999999999999974 599999999
Q ss_pred cc-CChhhHHHHHHHH
Q 001334 90 KG-GSSSKVVDCILCL 104 (1097)
Q Consensus 90 e~-kn~~kVv~cLlaL 104 (1097)
++ +++..|+.||+.|
T Consensus 88 ~~~k~~~~v~~~l~~~ 103 (103)
T smart00033 88 EGNKLILGVIWTLILL 103 (103)
T ss_pred hcchHHHHHHHHHHhC
Confidence 99 7999999999864
No 35
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=99.21 E-value=7.8e-12 Score=156.41 Aligned_cols=96 Identities=24% Similarity=0.370 Sum_probs=82.0
Q ss_pred CCCccCCCCCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCC
Q 001334 1 MDKGASGTLPKEPSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQL 80 (1097)
Q Consensus 1 ie~v~~~~l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~ 80 (1097)
||+|+|++| |+..||.++|||||+|++|.|.+.|..--.++...... |++.+||..|++|++.+|+
T Consensus 51 ~e~cl~edL---~pttele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~~~-----------frHtdNi~q~~~~me~igl 116 (1401)
T KOG2128|consen 51 IEECLGEDL---PPTTELEEGLRNGVYLAKLGQFFAPDLEQTIYKANDLH-----------FRHTDNINQWLRAMESIGL 116 (1401)
T ss_pred HHHHhcccC---CCchHHHHHhhhhhHHHHHHhhcCCcceeeeeecCCce-----------eecchhHHHHHHHHhhcCC
Confidence 689999999 67788999999999999999999997554444432222 9999999999999999999
Q ss_pred C---ceecCcccccCChhhHHHHHHHHhhhhhhhc
Q 001334 81 L---TFEASDLEKGGSSSKVVDCILCLKGYYEWKQ 112 (1097)
Q Consensus 81 ~---lFet~DL~e~kn~~kVv~cLlaLks~~~~K~ 112 (1097)
| .|++.|+|+|+|++ |+.||+||.. .-.|+
T Consensus 117 P~iF~~E~~Dvy~~kN~p-~i~cihaLs~-~l~k~ 149 (1401)
T KOG2128|consen 117 PEIFYPETTDVYEGKNIP-VIYCIHALSL-YLFKQ 149 (1401)
T ss_pred CcccccchhhhhcCCCCc-eeeHHHHHHH-HHhcC
Confidence 9 78999999999999 9999999954 44444
No 36
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.18 E-value=1e-11 Score=148.51 Aligned_cols=97 Identities=26% Similarity=0.439 Sum_probs=89.4
Q ss_pred CCCccCCCCCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCC
Q 001334 1 MDKGASGTLPKEPSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQL 80 (1097)
Q Consensus 1 ie~v~~~~l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~ 80 (1097)
||+|+++++| +..|.+.|||||+|..|..+++|+.+.+++...+.+ |++.+||+.||..++..|+
T Consensus 53 Iee~~~~~l~----~~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~~LQ-----------frHtdNIN~Fld~i~~vGl 117 (1054)
T COG5261 53 IEEVIEEALP----ELCFEDSLRNGVFLAKLTQRFNPDLTTVIFPADKLQ-----------FRHTDNINAFLDLIEHVGL 117 (1054)
T ss_pred HHHHhccCCc----hhhHHHHHhccchHHHHHHHhCCCceeEeeecccce-----------eeccccHHHHHhHhhhcCC
Confidence 5788888886 788999999999999999999999998887766666 9999999999999999999
Q ss_pred C---ceecCcccccCChhhHHHHHHHHhhhhhhhc
Q 001334 81 L---TFEASDLEKGGSSSKVVDCILCLKGYYEWKQ 112 (1097)
Q Consensus 81 ~---lFet~DL~e~kn~~kVv~cLlaLks~~~~K~ 112 (1097)
| -||..||||+||++||+.||+||..+-.|++
T Consensus 118 Pe~FhFEl~DlYekKN~pkViyciHaL~~~ls~~g 152 (1054)
T COG5261 118 PESFHFELQDLYEKKNIPKVIYCIHALISMLSWPG 152 (1054)
T ss_pred cceeeeehHhhhccCCcchhHHHHHHHHHHhcCCC
Confidence 9 8999999999999999999999999888875
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=2.7e-11 Score=141.69 Aligned_cols=86 Identities=24% Similarity=0.386 Sum_probs=78.6
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC---ceecCccc
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL---TFEASDLE 89 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~---lFet~DL~ 89 (1097)
.-.+||..+|.||||||+|+|.|+|.+|+.|. ++++..+.++..+|+.||.+||.||+++|+| ++...|+.
T Consensus 592 sLp~Dl~aALtDGViLChLaN~lRPRSV~SIH------VPSPaV~klsmarcrrNVdnFLeaCRkiGVpEa~lCS~~Dil 665 (722)
T KOG0532|consen 592 SLPEDLAAALTDGVILCHLANHLRPRSVASIH------VPSPAVPKLSMARCRRNVDNFLEACRKIGVPEADLCSPMDIL 665 (722)
T ss_pred cCchhHHHHhhcchhhHhhhcccCCCCcccee------cCCCccchhHHHHHHHhHHHHHHHHHHcCCChHhhcCHHHhh
Confidence 44688999999999999999999999997654 4567788999999999999999999999999 99999999
Q ss_pred cc--CChhhHHHHHHHH
Q 001334 90 KG--GSSSKVVDCILCL 104 (1097)
Q Consensus 90 e~--kn~~kVv~cLlaL 104 (1097)
.+ .+..+|+++++++
T Consensus 666 q~~~r~~rk~~~t~~~~ 682 (722)
T KOG0532|consen 666 QKIERNPRKVARTVLTV 682 (722)
T ss_pred hhhcccchhHHHHHHhh
Confidence 98 9999999999987
No 38
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.11 E-value=3.6e-13 Score=161.90 Aligned_cols=296 Identities=27% Similarity=0.285 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhcCCCCEEEEEEeCCCCCCCCCCCCceEEecCCCc---EEEe
Q 001334 328 EEELYRLEHYIKNLEVASSSYQKV---LEENRVLYNQVQDLKGTIRVYCRVRPFLPGQSNGQSTVDYIGENGN---IMVT 401 (1097)
Q Consensus 328 ~~~~~~l~~~~~~l~~~~~~~~~~---l~err~L~N~lqelKGnIRV~cRVRP~~~~E~~~~s~v~~~~~~~~---i~I~ 401 (1097)
...+.-|+..+.+|.......+.- ..-+|.||+.++..+ +++|+|+|+|......+...+..+...... ..+.
T Consensus 264 N~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~ 342 (568)
T COG5059 264 NKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQV 342 (568)
T ss_pred HhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccc
Confidence 344455666666664321222222 234799999999998 999999999987553322222222211111 1111
Q ss_pred CCCCCCCCCceeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHH
Q 001334 402 NPFKQGKDARKMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALR 481 (1097)
Q Consensus 402 ~p~~~gk~~~k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~ 481 (1097)
+...+.......|.||.+|.+...+..++.....+++..++| +++||++++|+++||.- ...++..-.+.
T Consensus 343 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 412 (568)
T COG5059 343 NSSSDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSG----IFAYMQSLKKETETLKS------RIDLIMKSIIS 412 (568)
T ss_pred cCcCcchHHHHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhh----HHHHHhhhhhhhhcccc------hhhhhhhhhhh
Confidence 111111123456999999999999999999999999999999 99999999999999954 33466666667
Q ss_pred HHHHHhhh-cCCceEEEEEEEEEEEecceeeeccCCCCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhc
Q 001334 482 DLFQISNT-RGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKN 560 (1097)
Q Consensus 482 ~LF~~~~~-~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~n 560 (1097)
..|..... ....|.|...+.++++|-....++...........+..........+..++ .......+..... .+...
T Consensus 413 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~ 490 (568)
T COG5059 413 GTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLS-SIPEETSDRVESE-KASKL 490 (568)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhh-hcchhhhhhhhhh-hhccc
Confidence 77765543 334577777777888873333333321111110000000000000000011 1111112222222 56778
Q ss_pred ccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHh
Q 001334 561 RAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALA 640 (1097)
Q Consensus 561 R~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa 640 (1097)
+..+.+.+|.+++++|++|+.+..+.....+... +++|||||+||. .+...|.++++...+|++|..+|++|.++.
T Consensus 491 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 491 RSSASTKLNLRSSRSHSKFRDHLNGSNSSTKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhcccchhhhhcccchhhhhcccchhhhhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 8899999999999999999988876554333333 899999999999 999999999999999999999999998864
No 39
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.04 E-value=7.3e-11 Score=110.78 Aligned_cols=87 Identities=29% Similarity=0.516 Sum_probs=71.3
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCcc-ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHh-cCCC-ceecCccc
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAVL-KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKD-MQLL-TFEASDLE 89 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV~-kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~-lg~~-lFet~DL~ 89 (1097)
....+|.+.|+||++||+|+|.+.|+.++ +.+ .|+. . +.|.+++||..|+++|++ +|++ .+++.||+
T Consensus 19 ~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~-~~~~--------~-~~~~~~~Ni~~~l~~~~~~lg~~~~~~~~dl~ 88 (108)
T PF00307_consen 19 RRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKI-NPNL--------K-SPFDKLENIELALEAAEKKLGIPPLLSPEDLV 88 (108)
T ss_dssp STCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGS-STSS--------S-SHHHHHHHHHHHHHHHHHHTTSSCTS-HHHHH
T ss_pred CCcCcHHHHhcCHHHHHHHHHHHhhccchhhhc-cccc--------h-hhhHHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 34458999999999999999999999884 222 2211 0 459999999999999999 8988 67999999
Q ss_pred ccCChhhHHHHHHHHhhhhh
Q 001334 90 KGGSSSKVVDCILCLKGYYE 109 (1097)
Q Consensus 90 e~kn~~kVv~cLlaLks~~~ 109 (1097)
+.+|...|+.||.+|..+++
T Consensus 89 ~~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 89 EKGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp STT-HHHHHHHHHHHHHHHT
T ss_pred HCcCHHHHHHHHHHHHHHHC
Confidence 99999999999999988875
No 40
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=97.61 E-value=8.3e-05 Score=69.54 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=57.2
Q ss_pred CCCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCcc--ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHh-cCCC--c
Q 001334 8 TLPKEPSEEEFRLALRNGLILCNVLNKVNPGAVL--KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKD-MQLL--T 82 (1097)
Q Consensus 8 ~l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV~--kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~-lg~~--l 82 (1097)
-.+..+..+||...|+||.+||.|++...|+.++ .|.-+++| +.+.++.|+..|..+|.+ +|.. -
T Consensus 6 ~~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~m----------S~~~~l~N~~ll~~~c~~~l~~~~~~ 75 (85)
T PF11971_consen 6 CAPYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTM----------SQADSLYNLQLLNSFCQSHLGFSCCH 75 (85)
T ss_pred cCCCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccch----------HHHHhhhhHHHHHHHHHHHcCCCcCc
Confidence 4456688999999999999999999999999996 33334433 569999999999999977 4555 4
Q ss_pred eecCccc
Q 001334 83 FEASDLE 89 (1097)
Q Consensus 83 Fet~DL~ 89 (1097)
|++.||.
T Consensus 76 l~~edl~ 82 (85)
T PF11971_consen 76 LEPEDLL 82 (85)
T ss_pred CCHHHHh
Confidence 4666665
No 41
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=96.02 E-value=0.016 Score=54.84 Aligned_cols=80 Identities=21% Similarity=0.286 Sum_probs=59.0
Q ss_pred HHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHh-cCCC---ceecCcccc
Q 001334 15 EEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKD-MQLL---TFEASDLEK 90 (1097)
Q Consensus 15 ~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~-lg~~---lFet~DL~e 90 (1097)
...++..+|-|.=||.|-|.++|..--.+.... . + ..=.|-..|-.|+.||+. ++.| +|..+|||.
T Consensus 3 Vt~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~-~-----~----~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~ 72 (89)
T PF06395_consen 3 VTQLWKLFRQGYPLCVLFNALQPEEPLPVDPVS-S-----D----DLKVCKKAIYKFIQACKQELGFPDEELFTISDLYG 72 (89)
T ss_pred HHHHHHHHhCcCcHHHHHHccCCccCCCCCCCC-c-----c----hHHHHHHHHHHHHHHHHHhcCCCccceeeeecccc
Confidence 467899999999999999999997432331111 0 0 113466788999999965 6544 999999998
Q ss_pred c--CChhhHHHHHHHH
Q 001334 91 G--GSSSKVVDCILCL 104 (1097)
Q Consensus 91 ~--kn~~kVv~cLlaL 104 (1097)
. ..+.||+..+..|
T Consensus 73 ~dT~gfvKVi~~V~~v 88 (89)
T PF06395_consen 73 DDTNGFVKVIKVVNRV 88 (89)
T ss_pred CCCcchhhHHHHHHhh
Confidence 5 6788999888654
No 42
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.00 E-value=0.0032 Score=74.53 Aligned_cols=81 Identities=20% Similarity=0.365 Sum_probs=65.8
Q ss_pred cCCCCCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCcc-ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC--
Q 001334 5 ASGTLPKEPSEEEFRLALRNGLILCNVLNKVNPGAVL-KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL-- 81 (1097)
Q Consensus 5 ~~~~l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV~-kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~-- 81 (1097)
++.=||-+|...+|.+..+||++||+|+|.-.||.|. +.++. .-.+..|.+.||...-|..++.+|.-
T Consensus 138 l~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~---------kk~Lnp~~~~EN~~l~lnSAkAiGc~Vv 208 (627)
T KOG0046|consen 138 LKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINT---------KKKLNPFERNENLNLALNSAKAIGCTVV 208 (627)
T ss_pred hhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhcc---------CCcCChhhhccchhhHHhhcccccceEE
Confidence 3445778899999999999999999999999999986 33331 11234599999999999999999866
Q ss_pred ceecCcccccCCh
Q 001334 82 TFEASDLEKGGSS 94 (1097)
Q Consensus 82 lFet~DL~e~kn~ 94 (1097)
-.-+.||-||+--
T Consensus 209 NIga~Dl~eGrph 221 (627)
T KOG0046|consen 209 NIGAQDLAEGRPH 221 (627)
T ss_pred ecCchhhhcCCce
Confidence 5689999999754
No 43
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.72 E-value=0.11 Score=62.65 Aligned_cols=95 Identities=23% Similarity=0.223 Sum_probs=58.5
Q ss_pred eeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCc----hHHHHHHHHHHh
Q 001334 412 KMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGV----NYRALRDLFQIS 487 (1097)
Q Consensus 412 k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GI----ipRal~~LF~~~ 487 (1097)
+.|....-|.|.-+|-.- +..||+.+-.|...-+ -.|.|||||||||-.-=.. -..|-+ +--...+||...
T Consensus 3 ~~F~l~s~f~PaGDQP~A---I~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~-~~rPtLV~AhNKTLAaQLy~Ef 77 (663)
T COG0556 3 KPFKLHSPFKPAGDQPEA---IAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAK-VQRPTLVLAHNKTLAAQLYSEF 77 (663)
T ss_pred CceEeccCCCCCCCcHHH---HHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHH-hCCCeEEEecchhHHHHHHHHH
Confidence 357777778888888543 3556666666655443 4799999999999541000 000011 112345677666
Q ss_pred hhcCCceEEEEEEEEEEEecceee
Q 001334 488 NTRGDMIKYEVGVQMIEIYNEQVR 511 (1097)
Q Consensus 488 ~~~~~~~~y~V~VS~lEIYNE~V~ 511 (1097)
+.--........|||+.-|.-.-|
T Consensus 78 k~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 78 KEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHhCcCcceEEEeeeccccCcccc
Confidence 554444467789999998876654
No 44
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=90.53 E-value=0.14 Score=55.44 Aligned_cols=50 Identities=24% Similarity=0.476 Sum_probs=33.1
Q ss_pred eEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
.|+||.-+.. ..++..|..+..+...--..||. +|-||++|+||||-|.+
T Consensus 4 ~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 4 KYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp T-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 5899987653 44677776666665552233555 68899999999998754
No 45
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=89.26 E-value=0.15 Score=63.80 Aligned_cols=87 Identities=38% Similarity=0.718 Sum_probs=61.4
Q ss_pred ceeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhc
Q 001334 411 RKMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTR 490 (1097)
Q Consensus 411 ~k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~ 490 (1097)
...+.|+.+......+.--+....+-+..++++++.. +|++|+|.+.. ...|+.-+....++......
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 92 (670)
T KOG0239|consen 25 KKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK--------AGLTYTMEGSN----QPGGLLARLFKELIDLANSD 92 (670)
T ss_pred ccccCccccccccccccccCCccccchhhhhhhhhcc--------hhhhhhhhhhc----CcchhHHHhhhhcccccccC
Confidence 3457788888777666666766777778888888776 89999999954 23466666666666544333
Q ss_pred CCceEEEEEEEEEEEecceeeeccCC
Q 001334 491 GDMIKYEVGVQMIEIYNEQVRDLLVS 516 (1097)
Q Consensus 491 ~~~~~y~V~VS~lEIYNE~V~DLL~~ 516 (1097)
... ..++.|++.+.|++..
T Consensus 93 ~~~-------~~~~~~~~~~~~~~~~ 111 (670)
T KOG0239|consen 93 KTS-------NVVEAYNERLRDLLSE 111 (670)
T ss_pred CCc-------hhHHHHHHHHhhhccc
Confidence 321 1678899999999854
No 46
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.63 E-value=0.28 Score=57.66 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
..|+-||++|+|||+..
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 45888999999999875
No 47
>PRK06893 DNA replication initiation factor; Validated
Probab=86.98 E-value=0.38 Score=52.27 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=32.0
Q ss_pred eeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 412 KMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 412 k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
..++||..++... ..-+. -+.+..-+++|-+++-||++|+||||.+.+
T Consensus 11 ~~~~fd~f~~~~~-~~~~~----~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 11 DDETLDNFYADNN-LLLLD----SLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CcccccccccCCh-HHHHH----HHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 3578999886542 22121 122223357888899999999999999854
No 48
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=86.95 E-value=0.37 Score=59.81 Aligned_cols=52 Identities=17% Similarity=0.348 Sum_probs=37.3
Q ss_pred ceeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 411 RKMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 411 ~k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
...|+||..+.... ...+|..+..++...-.+||. ||-||.+|+||||-+..
T Consensus 282 ~~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 282 NPKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 35689998665443 445665566666654457886 78999999999999864
No 49
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.48 E-value=0.29 Score=55.85 Aligned_cols=30 Identities=37% Similarity=0.574 Sum_probs=26.4
Q ss_pred hhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 434 QPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 434 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
-|++..+++--++.|+..|+||||||.||-
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 456777888889999999999999999984
No 50
>PRK06620 hypothetical protein; Validated
Probab=86.02 E-value=0.29 Score=52.97 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=33.6
Q ss_pred eeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcc---eeEEeeccCCCCcceeec
Q 001334 412 KMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFN---VCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 412 k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyN---vcIfAYGQTGSGKTyTM~ 463 (1097)
..|+||..+...+. ...|..++.+.+. -|+| -.++-||++||||||.+.
T Consensus 11 ~~~tfd~Fvvg~~N-~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 11 SKYHPDEFIVSSSN-DQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCchhhEecccH-HHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 35888887765444 5577666554431 1444 358899999999999985
No 51
>PRK09039 hypothetical protein; Validated
Probab=85.82 E-value=14 Score=43.18 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 001334 209 MIIDTLLGKVVKDFSAVLVSQGTQLGLF 236 (1097)
Q Consensus 209 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 236 (1097)
||+...|+..+..++..|...+.++..+
T Consensus 38 ~~~q~fLs~~i~~~~~eL~~L~~qIa~L 65 (343)
T PRK09039 38 VVAQFFLSREISGKDSALDRLNSQIAEL 65 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5667777777777777777777666553
No 52
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=85.76 E-value=2.7 Score=49.86 Aligned_cols=50 Identities=20% Similarity=0.372 Sum_probs=29.5
Q ss_pred eEeeceeeCCCCChHHHHhhh-hhhHh-hhcC--C--cceeEEeeccCCCCcceee
Q 001334 413 MFLFNKVFAPNVSQEQIYVDT-QPLVR-SVLD--G--FNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev-~PLV~-svLd--G--yNvcIfAYGQTGSGKTyTM 462 (1097)
.+.|+.|-|.+..-+++-+.+ .|+.. ..+. | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 356777766544444444333 34432 2232 2 2345788999999999876
No 53
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.29 E-value=7.1 Score=39.44 Aligned_cols=64 Identities=28% Similarity=0.482 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 001334 299 TDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQKVLEENRVLYNQVQDL 365 (1097)
Q Consensus 299 l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~err~L~N~lqel 365 (1097)
+...+.++..|+.....++..+......|.++-..|+..+..+ ..++..+-..|+.||++|+.+
T Consensus 68 ~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~---~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 68 LQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSEL---EQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhc
Confidence 3334444444555555555555555566666666666655544 567777888899999999865
No 54
>PRK12377 putative replication protein; Provisional
Probab=85.26 E-value=0.47 Score=52.78 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=35.3
Q ss_pred eeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 415 LFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 415 ~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
+||.-......|..++..+..+++....+. ..|+-||++|+||||.+.+
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 355444445567778877777777776654 3577899999999999864
No 55
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=84.65 E-value=7.4 Score=45.24 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=15.1
Q ss_pred eeEEeeccCCCCcceeec
Q 001334 446 VCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM~ 463 (1097)
..|+-||++|+|||+++.
T Consensus 157 ~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 348889999999998873
No 56
>PRK08084 DNA replication initiation factor; Provisional
Probab=84.42 E-value=0.55 Score=51.35 Aligned_cols=48 Identities=13% Similarity=0.321 Sum_probs=31.9
Q ss_pred eeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 412 KMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 412 k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
..|+||.-+.. .+...+..+..++.. .+ ...++-||++|+||||.+.+
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~~~~~~--~~-~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQNALRQ--EH-SGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CcCCccccccC--ccHHHHHHHHHHHhC--CC-CCeEEEECCCCCCHHHHHHH
Confidence 34778866644 556677665544331 12 24688999999999999854
No 57
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.97 E-value=0.4 Score=57.95 Aligned_cols=31 Identities=32% Similarity=0.337 Sum_probs=26.1
Q ss_pred hhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 434 QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 434 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
...+..++..-++.|+..|+||||||.||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 3456667788899999999999999999964
No 58
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=83.87 E-value=0.57 Score=56.09 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=35.4
Q ss_pred ceeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 411 RKMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 411 ~k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
...|+||.-+.. ..+...|..+..+... -..||. +|-||++|+||||.|..
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 346899987743 4555666665555543 123675 89999999999999864
No 59
>PRK07952 DNA replication protein DnaC; Validated
Probab=83.66 E-value=0.66 Score=51.51 Aligned_cols=49 Identities=14% Similarity=0.164 Sum_probs=33.7
Q ss_pred eeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 415 LFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 415 ~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
+||.-......|..++..+...++....|++ .++-||.+|+||||.+.+
T Consensus 70 tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 70 SFENYRVECEGQMNALSKARQYVEEFDGNIA-SFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred ccccccCCCchHHHHHHHHHHHHHhhccCCc-eEEEECCCCCCHHHHHHH
Confidence 4554333345566777777666666555543 678899999999999854
No 60
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=83.50 E-value=0.72 Score=51.38 Aligned_cols=49 Identities=22% Similarity=0.125 Sum_probs=34.5
Q ss_pred EeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 414 FLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
|.|..+-.....+..+|..+..++..+-.|.|. +-||++|+||||-..+
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl--~l~G~~G~GKThLa~A 124 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGENL--VLLGPPGVGKTHLAIA 124 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCcE--EEECCCCCcHHHHHHH
Confidence 333333344556788888887777777766665 4599999999998854
No 61
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=83.49 E-value=0.63 Score=54.66 Aligned_cols=52 Identities=19% Similarity=0.340 Sum_probs=34.2
Q ss_pred ceeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 411 RKMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 411 ~k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
...|+||.-.. ...+...|..+..+...--..||. ++-||++|+||||.+..
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n~-l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYNP-LFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCCe-EEEECCCCCcHHHHHHH
Confidence 35688998442 345566776665555542223454 67799999999999843
No 62
>PRK05642 DNA replication initiation factor; Validated
Probab=83.41 E-value=0.76 Score=50.28 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=29.6
Q ss_pred eEeeceeeCCCCChHHHHhhhhhhHhhhcCCc-ceeEEeeccCCCCcceeecC
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGF-NVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PLV~svLdGy-NvcIfAYGQTGSGKTyTM~G 464 (1097)
.|+||.-+... +...+..+..+.... .++ .-.++-||.+|+||||-+.+
T Consensus 15 ~~tfdnF~~~~--~~~a~~~~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 15 DATFANYYPGA--NAAALGYVERLCEAD-AGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred cccccccCcCC--hHHHHHHHHHHhhcc-ccCCCCeEEEECCCCCCHHHHHHH
Confidence 47888877432 344444433332221 122 24578899999999999754
No 63
>PRK08116 hypothetical protein; Validated
Probab=82.56 E-value=0.66 Score=51.96 Aligned_cols=50 Identities=24% Similarity=0.390 Sum_probs=35.2
Q ss_pred EeeceeeCCCCChHHHHhhhhhhHhhhcC--CcceeEEeeccCCCCcceeecC
Q 001334 414 FLFNKVFAPNVSQEQIYVDTQPLVRSVLD--GFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev~PLV~svLd--GyNvcIfAYGQTGSGKTyTM~G 464 (1097)
++||.-. .+..+...|..+...++.+.+ ..|..++-||.+|+||||.+..
T Consensus 82 ~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 82 STFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred cchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 4566533 355566677777777776543 3456689999999999999843
No 64
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=81.61 E-value=0.8 Score=55.02 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=33.6
Q ss_pred eEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
.|+||.-+... +++..|..+..++..-=..|| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 48999866544 455667655555443212355 478899999999999854
No 65
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=81.60 E-value=0.79 Score=54.75 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=34.3
Q ss_pred ceeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 411 RKMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 411 ~k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
...|+||.-... ..+...|..+..+...--..||. +|-||++|+||||.+..
T Consensus 116 ~~~~tfd~fv~g-~~n~~a~~~~~~~~~~~~~~~~~-l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 116 NPKYTFDNFVVG-KSNRLAHAAALAVAENPGKAYNP-LFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCcccccccC-CCcHHHHHHHHHHHhCcCccCCe-EEEECCCCCCHHHHHHH
Confidence 356889884432 34555666665555543234554 77899999999999854
No 66
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=81.45 E-value=2.3 Score=50.94 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=50.8
Q ss_pred CCCHHHHHHHhHhHHHHHHHHhhhCCCCc-cceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC
Q 001334 12 EPSEEEFRLALRNGLILCNVLNKVNPGAV-LKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL 81 (1097)
Q Consensus 12 ~~s~edf~~~LrDGvILC~L~N~l~PgsV-~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~ 81 (1097)
+.+.-||...-|||.++|+|+|..+|..+ +.+.+-+ -.+.++-.|+++||-..||...+.+|+.
T Consensus 144 ~vd~~df~rswrdGLaf~aLIh~~rPDtld~n~ld~q------kknk~~n~~qafe~a~k~Igi~rli~ve 208 (612)
T COG5069 144 EVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQ------KKNKALNNFQAFENANKVIGIARLIGVE 208 (612)
T ss_pred CccHHHHHHHhhhhHHHHHHHhhcCCcccCccccchh------hcccchhHHHHHHHHHHhhchHhhcCcc
Confidence 56777999999999999999999999955 3444322 1234556799999999999999999754
No 67
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=80.31 E-value=1.1 Score=47.56 Aligned_cols=46 Identities=17% Similarity=0.365 Sum_probs=31.9
Q ss_pred eEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
.|+||....+ .+..++..++.++. .+....|+-||++|+||||...
T Consensus 11 ~~~~~~~~~~--~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 11 DPTFDNFYAG--GNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred chhhcCcCcC--CcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHH
Confidence 4677776632 45566666554433 4556678999999999999873
No 68
>PRK09087 hypothetical protein; Validated
Probab=79.91 E-value=0.94 Score=49.50 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=30.8
Q ss_pred eeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 412 KMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 412 k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
..|+||.-+...+. ..+|..+.. ...-.+-.++-||++||||||-+.
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~l~~----~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSLVDH----WPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecCch-HHHHHHHHh----cccCCCCeEEEECCCCCCHHHHHH
Confidence 35788887754444 446664322 222235568899999999999985
No 69
>PRK06835 DNA replication protein DnaC; Validated
Probab=79.77 E-value=0.74 Score=53.27 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=27.3
Q ss_pred HHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 427 EQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 427 eeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
..++..+...|+.+-.+. -.|+-||++|+||||.+.+
T Consensus 166 ~~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 166 EKILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 445555666777766544 5588999999999998854
No 70
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=79.50 E-value=1.1 Score=45.18 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=15.7
Q ss_pred ceeEEeeccCCCCcceeecC
Q 001334 445 NVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM~G 464 (1097)
..-++..++||||||++|..
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCcChhhhh
Confidence 44455678999999999975
No 71
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=78.96 E-value=1.4 Score=47.44 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=30.8
Q ss_pred eeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 412 KMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 412 k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
..|+||..++.. . +.++..++.++.. .+.+..++-||.+|+||||.+.
T Consensus 13 ~~~~~d~f~~~~-~-~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 13 PPPTFDNFVAGE-N-AELVARLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred ChhhhcccccCC-c-HHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 358898887322 2 3344444444442 2334578899999999999874
No 72
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=78.82 E-value=74 Score=38.22 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=13.9
Q ss_pred HHhhhhhhcCCCCEEEEEEe
Q 001334 356 RVLYNQVQDLKGTIRVYCRV 375 (1097)
Q Consensus 356 r~L~N~lqelKGnIRV~cRV 375 (1097)
-.+||+..+..|.+-|..--
T Consensus 327 ery~Ne~~~~g~s~~Va~~a 346 (552)
T KOG2129|consen 327 ERYLNEFVDFGDSVEVALHA 346 (552)
T ss_pred HHHHhhhhccCCceeeeccc
Confidence 44688888888877765443
No 73
>PRK06526 transposase; Provisional
Probab=78.28 E-value=0.96 Score=50.43 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=25.3
Q ss_pred eCCCCChHHHHhh-hhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 420 FAPNVSQEQIYVD-TQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 420 F~~~atQeeVF~e-v~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
+.+..++..+..- ....+. .+.| |+.||++|+||||.+.+
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 3344444444432 234443 4555 67899999999999864
No 74
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=77.45 E-value=1.2 Score=53.02 Aligned_cols=51 Identities=22% Similarity=0.422 Sum_probs=30.9
Q ss_pred eeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 412 KMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 412 k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
..|+||.-.... ++.-.|..+..+-+.--.-||. ||-||.+|+||||-|..
T Consensus 82 ~~ytFdnFv~g~-~N~~A~aa~~~va~~~g~~~np-lfi~G~~GlGKTHLl~A 132 (408)
T COG0593 82 PKYTFDNFVVGP-SNRLAYAAAKAVAENPGGAYNP-LFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCchhheeeCC-chHHHHHHHHHHHhccCCcCCc-EEEECCCCCCHHHHHHH
Confidence 458898865444 3444444332222221122554 77899999999999953
No 75
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=76.58 E-value=1.5 Score=50.23 Aligned_cols=37 Identities=27% Similarity=0.481 Sum_probs=24.7
Q ss_pred hHHHHhhhhhhHhhhcC-CcceeEEeeccCCCCcceee
Q 001334 426 QEQIYVDTQPLVRSVLD-GFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 426 QeeVF~ev~PLV~svLd-GyNvcIfAYGQTGSGKTyTM 462 (1097)
.++-++.+...+..++. +...+++-||++|+|||+++
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34444444444444444 45568999999999999987
No 76
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=76.56 E-value=0.93 Score=42.41 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=14.8
Q ss_pred EEeeccCCCCcceeecC
Q 001334 448 IFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM~G 464 (1097)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 46799999999999965
No 77
>PRK08939 primosomal protein DnaI; Reviewed
Probab=74.77 E-value=1.4 Score=50.40 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=33.3
Q ss_pred EeeceeeCCCCChHHHHhhhhhhHhhhcCC-cceeEEeeccCCCCcceeecC
Q 001334 414 FLFNKVFAPNVSQEQIYVDTQPLVRSVLDG-FNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev~PLV~svLdG-yNvcIfAYGQTGSGKTyTM~G 464 (1097)
.+||.+-.....+..++..+...++....| ..-.|+-||++|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 345554333335666776666666655433 223588999999999999865
No 78
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=74.45 E-value=1.9 Score=49.90 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=24.0
Q ss_pred hHHHHhhhhhhHhhhcC-CcceeEEeeccCCCCcceee
Q 001334 426 QEQIYVDTQPLVRSVLD-GFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 426 QeeVF~ev~PLV~svLd-GyNvcIfAYGQTGSGKTyTM 462 (1097)
-++-++.....+..++. +...+++-||++|+|||+++
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 34444444344444443 44566889999999999987
No 79
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=73.20 E-value=1.9 Score=50.64 Aligned_cols=28 Identities=39% Similarity=0.623 Sum_probs=20.4
Q ss_pred hhHhhhcCCccee-EEeeccCCCCcceee
Q 001334 435 PLVRSVLDGFNVC-IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 435 PLV~svLdGyNvc-IfAYGQTGSGKTyTM 462 (1097)
..+..++.|.-.. ++.||.||+|||.|+
T Consensus 31 ~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 31 SFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 3344555544444 999999999999987
No 80
>PRK08727 hypothetical protein; Validated
Probab=73.16 E-value=1.8 Score=47.32 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=26.8
Q ss_pred eEeeceeeCCCCChHHHHhhhhhhHhhhcCCcc-eeEEeeccCCCCcceeecC
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFN-VCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyN-vcIfAYGQTGSGKTyTM~G 464 (1097)
.|+||.-+...+ + ....+..+. .|+. -.|+-||++|+||||.+..
T Consensus 15 ~~~f~~f~~~~~-n--~~~~~~~~~----~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 15 DQRFDSYIAAPD-G--LLAQLQALA----AGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred cCChhhccCCcH-H--HHHHHHHHH----hccCCCeEEEECCCCCCHHHHHHH
Confidence 467887664333 2 222222221 2332 3589999999999999854
No 81
>PRK08181 transposase; Validated
Probab=72.92 E-value=2 Score=48.51 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=17.6
Q ss_pred CCcceeEEeeccCCCCcceeecC
Q 001334 442 DGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 442 dGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 5666 77899999999999865
No 82
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=72.67 E-value=1.8 Score=40.88 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=15.5
Q ss_pred cceeEEeeccCCCCcceee
Q 001334 444 FNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM 462 (1097)
....++-+|++|+|||+++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3446788999999999876
No 83
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=72.62 E-value=1.1 Score=43.06 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=13.1
Q ss_pred ceeEEeeccCCCCcceee
Q 001334 445 NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM 462 (1097)
+.+++.||.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999887
No 84
>PF12846 AAA_10: AAA-like domain
Probab=70.62 E-value=1.5 Score=47.80 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=16.0
Q ss_pred ceeEEeeccCCCCcceeec
Q 001334 445 NVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM~ 463 (1097)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999984
No 85
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=70.19 E-value=2.1 Score=43.54 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=19.2
Q ss_pred HHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 429 IYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 429 VF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.++....++.....|..-+++-+|..|+|||+.+
T Consensus 8 e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 8 EIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHHHHHHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 3344455555445677788999999999999886
No 86
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=70.05 E-value=1.6 Score=46.92 Aligned_cols=59 Identities=14% Similarity=0.271 Sum_probs=31.6
Q ss_pred HHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcHHHHH
Q 001334 625 INRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETI 684 (1097)
Q Consensus 625 INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ETL 684 (1097)
......++-+.+..|.......+--...+...|-++++.+.+ +.|+.+|--+......+
T Consensus 163 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-i~IiDLs~~~~~~~~~i 221 (229)
T PF01935_consen 163 ASSTIRALLRRLERLFRRGSFFSSTPEDIIKLLLDYLNKPGK-IVIIDLSGVDEEVQDII 221 (229)
T ss_pred hHHHHHHHHHHHHHHHhcccccccCcccHHHHhhhhcCCCCC-EEEEECCCCCHHHHHHH
Confidence 344455566666666554444333334555556566655444 45557776555444443
No 87
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=69.30 E-value=2 Score=42.94 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
++..+++|.| ++..|+||||||+....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 3444556777 67889999999999754
No 88
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=69.26 E-value=1.7 Score=40.44 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=15.8
Q ss_pred eeEEeeccCCCCcceeecC
Q 001334 446 VCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM~G 464 (1097)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 3577899999999999843
No 89
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=68.56 E-value=1.9 Score=53.37 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=23.2
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
.+..++..-++.|+-.|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 34556666778899999999999999843
No 90
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=68.27 E-value=1.9 Score=55.65 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=23.1
Q ss_pred HhhhhhhHhhhcC--CcceeEEeeccCCCCcceee
Q 001334 430 YVDTQPLVRSVLD--GFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 430 F~ev~PLV~svLd--GyNvcIfAYGQTGSGKTyTM 462 (1097)
+..+...+..++. |-+.|||-||++|+|||.|+
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 3333444455553 45567899999999999997
No 91
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=68.14 E-value=2.2 Score=51.96 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=22.5
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
.+..++..-++.|+-.|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4455566667788999999999999995
No 92
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=68.08 E-value=28 Score=46.71 Aligned_cols=27 Identities=26% Similarity=0.625 Sum_probs=21.6
Q ss_pred hhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 434 QPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 434 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
..+|..++.|.++.+ .-+||+|||.+-
T Consensus 466 ~eaI~aiL~GrDVLV--imPTGSGKSLcY 492 (1195)
T PLN03137 466 REIINATMSGYDVFV--LMPTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHcCCCEEE--EcCCCccHHHHH
Confidence 457788999999655 459999999874
No 93
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=67.76 E-value=1.9 Score=45.83 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=15.9
Q ss_pred eeEEeeccCCCCcceeec
Q 001334 446 VCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM~ 463 (1097)
+.|+-.|+||||||++|.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 578889999999999984
No 94
>PRK10436 hypothetical protein; Provisional
Probab=67.66 E-value=2.1 Score=51.86 Aligned_cols=27 Identities=41% Similarity=0.465 Sum_probs=22.0
Q ss_pred HhhhcCCcceeEEeeccCCCCcceeec
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
+..++..-++.|+..|+||||||.||.
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 444555667889999999999999984
No 95
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=67.53 E-value=2.5 Score=47.64 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=27.0
Q ss_pred eeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 415 LFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 415 ~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
.||.+.+ |+++.+....++. .|....++-||++|+|||+++.
T Consensus 13 ~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHH
Confidence 4666664 5555554443333 3433357789999999999873
No 96
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=65.84 E-value=2.5 Score=48.96 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=19.6
Q ss_pred HhhhcCCcceeEEeeccCCCCcceeec
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
+..++.--.+.|+-.|+||||||+||.
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 333443334678889999999999994
No 97
>PF13245 AAA_19: Part of AAA domain
Probab=65.11 E-value=2.6 Score=38.68 Aligned_cols=26 Identities=38% Similarity=0.600 Sum_probs=17.4
Q ss_pred HhhhcCCcceeEEeeccCCCCcceeec
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
|..++.| +..+.-.|..|||||+|+.
T Consensus 3 v~~al~~-~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALAG-SPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHhh-CCeEEEECCCCCCHHHHHH
Confidence 4444553 3334458999999999984
No 98
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=64.97 E-value=5.6 Score=51.26 Aligned_cols=25 Identities=44% Similarity=0.525 Sum_probs=20.9
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..+.+|+|+.|.| +||||||-+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 455678999999987 9999999764
No 99
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.81 E-value=31 Score=37.81 Aligned_cols=50 Identities=8% Similarity=0.085 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 295 HAELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVA 344 (1097)
Q Consensus 295 ~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~ 344 (1097)
....+..++.++.+|+.++.++..+..+....+++.+...+..+.+|+..
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~ 140 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEE 140 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777776666666666665555555544433
No 100
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=64.76 E-value=8.8 Score=46.78 Aligned_cols=79 Identities=25% Similarity=0.392 Sum_probs=55.2
Q ss_pred CCCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCcc-ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC--cee
Q 001334 8 TLPKEPSEEEFRLALRNGLILCNVLNKVNPGAVL-KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL--TFE 84 (1097)
Q Consensus 8 ~l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV~-kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~--lFe 84 (1097)
.++..|...++.+-||||.||-.+..+|.||.|. +.++.|- + +.-..|+..||-..-.+-.+.++.. ...
T Consensus 399 Slgv~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~-~------~~~~~~kklENcNyav~lGk~~~FSLVgi~ 471 (627)
T KOG0046|consen 399 SLGVNPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPP-S------PLKMPFKKVENCNYAVKLGKQLKFSLVGIA 471 (627)
T ss_pred hcCCcHHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCC-C------cccccHHHhhcchHHHHHHhhcceeeeccc
Confidence 3556788899999999999999999999999885 4444331 1 1112288888877666655555333 446
Q ss_pred cCcccccCC
Q 001334 85 ASDLEKGGS 93 (1097)
Q Consensus 85 t~DL~e~kn 93 (1097)
-.|+++|..
T Consensus 472 G~DI~dGNk 480 (627)
T KOG0046|consen 472 GQDIVDGNK 480 (627)
T ss_pred cccccccch
Confidence 779998853
No 101
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=64.48 E-value=2.1 Score=47.81 Aligned_cols=130 Identities=20% Similarity=0.280 Sum_probs=70.8
Q ss_pred EeeceeeCCCCChHHHHhhhhhhHhhhcCCccee-EEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCC
Q 001334 414 FLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVC-IFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGD 492 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvc-IfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~ 492 (1097)
..+|...+-+...+.+.+.+.. +++|..+- ++-||..|+|||.++-+ |+......+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~----Fl~G~pannvLL~G~rGtGKSSlVka------------------ll~~y~~~G- 80 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQ----FLQGLPANNVLLWGARGTGKSSLVKA------------------LLNEYADQG- 80 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHH----HHcCCCCcceEEecCCCCCHHHHHHH------------------HHHHHhhcC-
Confidence 4566666666666666665544 44554332 45599999999887732 222222221
Q ss_pred ceEEEEEEEEEEEecceeeeccCCCCCCcccceecccCCCCeeecCCcEEee-CCHHHHHHHHHHHHhcccccccCCcCC
Q 001334 493 MIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIPV-TSTEDVIELMRIGQKNRAVGATALNER 571 (1097)
Q Consensus 493 ~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~l~Ir~~~~~~G~~V~gltev~V-~S~eev~~LL~~G~~nR~~asT~~N~~ 571 (1097)
+-++||..+.+.||-.--. .++..+..-=+++.+|+.-.- .+...+..+|+-|...| ....-+...
T Consensus 81 -------LRlIev~k~~L~~l~~l~~-----~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyAT 147 (249)
T PF05673_consen 81 -------LRLIEVSKEDLGDLPELLD-----LLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYAT 147 (249)
T ss_pred -------ceEEEECHHHhccHHHHHH-----HHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEe
Confidence 5678999888777641000 011111111134455553222 23556667776666554 444556677
Q ss_pred CCCceEEE
Q 001334 572 SSRSHSVL 579 (1097)
Q Consensus 572 SSRSHaIf 579 (1097)
|.|-|.|=
T Consensus 148 SNRRHLv~ 155 (249)
T PF05673_consen 148 SNRRHLVP 155 (249)
T ss_pred cchhhccc
Confidence 77777764
No 102
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=64.30 E-value=4.1 Score=49.06 Aligned_cols=52 Identities=25% Similarity=0.378 Sum_probs=34.6
Q ss_pred ceeEeeceeeCCCCChHHHHhhhhhhHhhh--cCC--cceeEEeeccCCCCcceeecC
Q 001334 411 RKMFLFNKVFAPNVSQEQIYVDTQPLVRSV--LDG--FNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 411 ~k~F~FD~VF~~~atQeeVF~ev~PLV~sv--LdG--yNvcIfAYGQTGSGKTyTM~G 464 (1097)
...|+||.-+.. .++...|..+..+.... ..| ||. +|-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeC-CcHHHHHHHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 456899987753 35556666555555432 223 554 56799999999999854
No 103
>PRK06921 hypothetical protein; Provisional
Probab=63.83 E-value=3.8 Score=46.00 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=24.3
Q ss_pred HHHhhhhhhHhhhcC---CcceeEEeeccCCCCcceeecC
Q 001334 428 QIYVDTQPLVRSVLD---GFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 428 eVF~ev~PLV~svLd---GyNvcIfAYGQTGSGKTyTM~G 464 (1097)
.++..+...++.+-+ +..-.|+-||++|+||||.+..
T Consensus 97 ~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 97 DAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 355445555655431 2234578899999999999854
No 104
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=62.71 E-value=3.1 Score=49.08 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=16.5
Q ss_pred cceeEEeeccCCCCcceeec
Q 001334 444 FNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM~ 463 (1097)
.++.|+-.|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 34567789999999999983
No 105
>PRK09183 transposase/IS protein; Provisional
Probab=61.81 E-value=5.2 Score=44.65 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=24.4
Q ss_pred eeCCCCChHHHHhh-hhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 419 VFAPNVSQEQIYVD-TQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 419 VF~~~atQeeVF~e-v~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
=|.+..+...+..- .... +-.|.|++ -||++|+||||.+.+
T Consensus 80 ~~~~~~~~~~i~~L~~~~~---i~~~~~v~--l~Gp~GtGKThLa~a 121 (259)
T PRK09183 80 TFATGAPQKQLQSLRSLSF---IERNENIV--LLGPSGVGKTHLAIA 121 (259)
T ss_pred ccCCCCCHHHHHHHhcCCc---hhcCCeEE--EEeCCCCCHHHHHHH
Confidence 35555554444322 1222 33566654 589999999998854
No 106
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=61.79 E-value=2.7 Score=43.86 Aligned_cols=30 Identities=33% Similarity=0.464 Sum_probs=21.1
Q ss_pred hhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 434 QPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 434 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
..|...+-.|.+.+++-||+.|+|||+.|.
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 334444445668889999999999999873
No 107
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=61.16 E-value=3.5 Score=48.34 Aligned_cols=20 Identities=35% Similarity=0.518 Sum_probs=17.3
Q ss_pred cceeEEeeccCCCCcceeec
Q 001334 444 FNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM~ 463 (1097)
-.+.|+-.|+||||||.||.
T Consensus 133 ~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45788889999999999983
No 108
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=60.92 E-value=3.2 Score=39.63 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=14.1
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
+|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5888999999999875
No 109
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=60.48 E-value=3.8 Score=45.95 Aligned_cols=28 Identities=39% Similarity=0.522 Sum_probs=20.7
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
.+..++..-.+.|+-.|.||||||.||.
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 3445555445667789999999999984
No 110
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=60.08 E-value=3.1 Score=44.62 Aligned_cols=17 Identities=47% Similarity=0.597 Sum_probs=14.7
Q ss_pred eEEeeccCCCCcceeec
Q 001334 447 CIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM~ 463 (1097)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 47789999999999973
No 111
>PF13479 AAA_24: AAA domain
Probab=59.95 E-value=3.9 Score=44.05 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=16.5
Q ss_pred ceeEEeeccCCCCcceeecC
Q 001334 445 NVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM~G 464 (1097)
+..++-||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45678899999999998754
No 112
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=59.20 E-value=94 Score=35.56 Aligned_cols=78 Identities=23% Similarity=0.446 Sum_probs=46.7
Q ss_pred eeceeeCCCCChHHHHhhh-hhhHhhhc---CCcc--eeEEeeccCCCCcceeec--------------CCCCCcccccC
Q 001334 415 LFNKVFAPNVSQEQIYVDT-QPLVRSVL---DGFN--VCIFAYGQTGSGKTYTMS--------------GPDLTAEETWG 474 (1097)
Q Consensus 415 ~FD~VF~~~atQeeVF~ev-~PLV~svL---dGyN--vcIfAYGQTGSGKTyTM~--------------G~~~~~~e~~G 474 (1097)
.+..|=+-+..-++|-+.+ -||.+.=| =|.. --++.||+.|+|||...- |... -..-.|
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef-vqkylg 231 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF-VQKYLG 231 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH-HHHHhc
Confidence 3444555555555565554 56655433 1222 237889999999974331 1100 012347
Q ss_pred chHHHHHHHHHHhhhcCCc
Q 001334 475 VNYRALRDLFQISNTRGDM 493 (1097)
Q Consensus 475 IipRal~~LF~~~~~~~~~ 493 (1097)
=-||.++++|....+....
T Consensus 232 egprmvrdvfrlakenaps 250 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKENAPS 250 (408)
T ss_pred cCcHHHHHHHHHHhccCCc
Confidence 7799999999988876654
No 113
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=59.16 E-value=10 Score=48.00 Aligned_cols=93 Identities=23% Similarity=0.197 Sum_probs=54.5
Q ss_pred EeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCch----HHHHHHHHHHhhh
Q 001334 414 FLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVN----YRALRDLFQISNT 489 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIi----pRal~~LF~~~~~ 489 (1097)
|....-|.|.-.|..-|.. +++.+-+|...- ..+|.|||||||||..--... ..+-|+ -....+|+.....
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~-~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQV-NRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHH
Confidence 4445557888888887764 455555663222 368999999999996521000 001111 1233455554443
Q ss_pred cCCceEEEEEEEEEEEecceee
Q 001334 490 RGDMIKYEVGVQMIEIYNEQVR 511 (1097)
Q Consensus 490 ~~~~~~y~V~VS~lEIYNE~V~ 511 (1097)
--........|||+.-|.-..|
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred hCCCCeEEEEeeecccCCcccc
Confidence 3223357788999999977654
No 114
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=59.06 E-value=3.1 Score=46.00 Aligned_cols=28 Identities=39% Similarity=0.552 Sum_probs=18.5
Q ss_pred hhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 434 QPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 434 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
..++..++.+ .+.|+-.|.||||||.+|
T Consensus 117 ~~~l~~~v~~-~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 117 AEFLRSAVRG-RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHHHCHHT-TEEEEEEESTTSSHHHHH
T ss_pred HHHHhhcccc-ceEEEEECCCccccchHH
Confidence 3344444333 344556799999999998
No 115
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=58.64 E-value=5.2 Score=43.65 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=16.9
Q ss_pred cCCcceeEEeeccCCCCcceee
Q 001334 441 LDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 441 LdGyNvcIfAYGQTGSGKTyTM 462 (1097)
++.....++-+|++|+|||+++
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 3333556778999999999887
No 116
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=58.33 E-value=3.7 Score=43.80 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=19.1
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|..++...+-.++-.|..|+||||+|
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 445555444444556899999999998
No 117
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=58.06 E-value=4.1 Score=47.04 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=18.6
Q ss_pred hhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 435 PLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 435 PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.++..++.+. ..|+-.|.||||||++|
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 3455555543 45566699999999777
No 118
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=58.02 E-value=6.1 Score=44.96 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=24.2
Q ss_pred hhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 434 QPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 434 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
-+++..+.--.-+.|+-.|.|||||+.||-
T Consensus 116 Pevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 116 PEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred cHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 456666666677788999999999999983
No 119
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=56.69 E-value=6 Score=41.77 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=15.4
Q ss_pred eEEeeccCCCCcceeecC
Q 001334 447 CIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM~G 464 (1097)
.|+-||++|+||||...+
T Consensus 49 ~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEEhhHhHHHHHHHHH
Confidence 477899999999999754
No 120
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=55.57 E-value=5 Score=50.66 Aligned_cols=35 Identities=37% Similarity=0.463 Sum_probs=27.1
Q ss_pred HHHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 428 QIYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 428 eVF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
-||..+......++ .|.|-||+-.|.+|||||+|+
T Consensus 67 Hif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhhhcccccccccccccceeeccccccccccch
Confidence 36766544444443 689999999999999999986
No 121
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=55.43 E-value=4.4 Score=38.72 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=13.2
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 567999999999886
No 122
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=55.11 E-value=18 Score=40.43 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=35.2
Q ss_pred eCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeEEEeecCCCccc
Q 001334 544 VTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERV 609 (1097)
Q Consensus 544 V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL~LVDLAGSER~ 609 (1097)
+.+++++..++..+... ..+. ...-|.-++.|.|.+.+. -.|.||||+|-.+.
T Consensus 86 ~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~~-------~~ltLIDlPGl~~~ 138 (240)
T smart00053 86 FTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPHV-------LNLTLIDLPGITKV 138 (240)
T ss_pred cCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCCC-------CceEEEeCCCcccc
Confidence 46788888888776542 1111 123466688888876543 36899999998653
No 123
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=53.80 E-value=5.3 Score=45.65 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=19.8
Q ss_pred hhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 435 PLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 435 PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
.++..++.+ ...|+-.|.||||||++|-
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 344445543 3456789999999999983
No 124
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=53.20 E-value=6.5 Score=39.17 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=14.2
Q ss_pred eEEeeccCCCCcceeecC
Q 001334 447 CIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM~G 464 (1097)
-++..|.||||||+++..
T Consensus 26 ~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 26 DVILAAPTGSGKTLAALL 43 (201)
T ss_pred cEEEECCCCCchhHHHHH
Confidence 345678999999998854
No 125
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=52.73 E-value=6.9 Score=43.82 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=25.2
Q ss_pred CCChHHHHhhhhhhHhhhcC--CcceeEEeeccCCCCcceee
Q 001334 423 NVSQEQIYVDTQPLVRSVLD--GFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 423 ~atQeeVF~ev~PLV~svLd--GyNvcIfAYGQTGSGKTyTM 462 (1097)
-..|+++......++..... +.-..++-||+.|+|||+..
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 34566666665555554332 21223566999999999876
No 126
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=52.61 E-value=4.5 Score=42.75 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=13.1
Q ss_pred eEEeeccCCCCcceeec
Q 001334 447 CIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM~ 463 (1097)
-++.+|+||||||++|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57889999999999984
No 127
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=51.98 E-value=6.1 Score=45.81 Aligned_cols=25 Identities=44% Similarity=0.623 Sum_probs=18.0
Q ss_pred hHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
++..++ .+.| |+-.|.||||||++|
T Consensus 136 ~L~~~v~~~~n--ilI~G~tGSGKTTll 161 (323)
T PRK13833 136 VIRSAIDSRLN--IVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHcCCe--EEEECCCCCCHHHHH
Confidence 344444 3444 677899999999998
No 128
>PTZ00424 helicase 45; Provisional
Probab=51.69 E-value=6.2 Score=45.79 Aligned_cols=27 Identities=33% Similarity=0.621 Sum_probs=20.7
Q ss_pred hhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 435 PLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 435 PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
..+..+++|.|+. ..++||||||.+..
T Consensus 57 ~ai~~i~~~~d~i--i~apTGsGKT~~~~ 83 (401)
T PTZ00424 57 RGIKPILDGYDTI--GQAQSGTGKTATFV 83 (401)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHHH
Confidence 4566678899864 56899999998653
No 129
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=51.58 E-value=5.6 Score=48.29 Aligned_cols=66 Identities=26% Similarity=0.374 Sum_probs=40.7
Q ss_pred HhhhcCCcceeEEeeccCCCCcceeecCCC----------CCcccccCchHH---------HHHHHHHHhhhcCCceEEE
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTMSGPD----------LTAEETWGVNYR---------ALRDLFQISNTRGDMIKYE 497 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM~G~~----------~~~~e~~GIipR---------al~~LF~~~~~~~~~~~y~ 497 (1097)
|..+.+|... +|++|||||||+...+|- .......|..|+ .+.+||.... ...|.
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~----k~~~~ 178 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR----KFSYL 178 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH----hhccc
Confidence 4556677775 899999999999987741 001111122333 2455665443 34677
Q ss_pred EEEEEEEEecc
Q 001334 498 VGVQMIEIYNE 508 (1097)
Q Consensus 498 V~VS~lEIYNE 508 (1097)
-.+-.+.+|+.
T Consensus 179 s~~~~~~~ygg 189 (482)
T KOG0335|consen 179 SGMKSVVVYGG 189 (482)
T ss_pred ccceeeeeeCC
Confidence 77778888976
No 130
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=51.15 E-value=6.4 Score=41.05 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=16.8
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
.|..++.--. ..+-.|+.|||||+|+.
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 3445554333 44568999999999874
No 131
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=50.59 E-value=1.4e+02 Score=36.44 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=13.6
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667999999999886
No 132
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=50.12 E-value=7.4 Score=39.57 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=12.1
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
+--.|.||+||||+-
T Consensus 56 lSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS 70 (127)
T ss_pred EEeecCCCCcHHHHH
Confidence 345699999999974
No 133
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=49.74 E-value=7.6 Score=46.38 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=19.1
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..+++|.| +++.++||||||.+.
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 4556778988 566789999999763
No 134
>PRK13342 recombination factor protein RarA; Reviewed
Probab=49.31 E-value=8.2 Score=45.80 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=24.6
Q ss_pred ChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 425 SQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 425 tQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
.|+.+......+...+-.+.-..++-||++|+|||++..
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 455565543334444444554566679999999998763
No 135
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=48.94 E-value=8.8 Score=41.86 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=14.4
Q ss_pred cceeEEeeccCCCCcceeec
Q 001334 444 FNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM~ 463 (1097)
.+-.+++.|+.||||||.-.
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHH
T ss_pred hCCeEEEECCCCCcHHHHHH
Confidence 56689999999999998753
No 136
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=48.86 E-value=1.4e+02 Score=38.80 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHh
Q 001334 211 IDTLLGKVVKDFSAVLVSQGTQLGLFLKKI 240 (1097)
Q Consensus 211 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 240 (1097)
.+.++|.++-.+|..+..+..|+.-+..++
T Consensus 86 etriyRrdv~llEddlk~~~sQiriLQn~c 115 (1265)
T KOG0976|consen 86 ETRIYRRDVNLLEDDLKHHESQIRILQNKC 115 (1265)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 367999999999999998888876554444
No 137
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=48.78 E-value=9.1 Score=44.76 Aligned_cols=37 Identities=22% Similarity=0.525 Sum_probs=26.4
Q ss_pred CCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 423 NVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 423 ~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+..|..+|+.+-..+.. .+| ..+|..|.-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~-~~~--~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN-EEG--LNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc-cCC--cEEEEEcCCCCChhHHH
Confidence 35688999886333333 344 45678999999999987
No 138
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=48.61 E-value=8.7 Score=40.04 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=17.8
Q ss_pred HhhhcCCcceeEEeeccCCCCcceee
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
++.++.|.| ++..++||+|||.+.
T Consensus 30 ~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 30 IPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHhcCCc--EEEECCCCCcHHHHH
Confidence 344556877 466889999999873
No 139
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=48.26 E-value=7.3 Score=38.18 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=13.4
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999875
No 140
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=47.82 E-value=8.7 Score=43.26 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=16.7
Q ss_pred CCc-ceeEEeeccCCCCcceeec
Q 001334 442 DGF-NVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 442 dGy-NvcIfAYGQTGSGKTyTM~ 463 (1097)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 443 3466679999999999874
No 141
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=47.79 E-value=1.3e+02 Score=26.82 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 299 TDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSY 348 (1097)
Q Consensus 299 l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 348 (1097)
++++-.+++.|......+..++..++...+..-.+..+.-..|......|
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 45556666666666666666666666554444333333333333333333
No 142
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=47.58 E-value=8.4 Score=40.49 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=18.0
Q ss_pred hhHhhhcC-CcceeEEeeccCCCCcceeec
Q 001334 435 PLVRSVLD-GFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 435 PLV~svLd-GyNvcIfAYGQTGSGKTyTM~ 463 (1097)
+++..++. |.+ +.-.|+||||||.+|.
T Consensus 16 ~~l~~~v~~g~~--i~I~G~tGSGKTTll~ 43 (186)
T cd01130 16 AYLWLAVEARKN--ILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHhCCCE--EEEECCCCCCHHHHHH
Confidence 34444443 544 4557999999999873
No 143
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=47.42 E-value=99 Score=35.51 Aligned_cols=29 Identities=14% Similarity=0.415 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 299 TDRHQKQLQELKLQYLETKGEVKEIQSNW 327 (1097)
Q Consensus 299 l~~~~~~l~~lk~~~~~~k~~~~~~~~~~ 327 (1097)
|.+.+..|++...++.++|.|+.-|++.|
T Consensus 77 Lkes~~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 77 LKESENRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 44445555566666667777776676666
No 144
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.30 E-value=7e+02 Score=31.61 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 001334 210 IIDTLLGKVVKDFSAVLVSQGT 231 (1097)
Q Consensus 210 ~~~~~l~~~~~~~~~~l~~~~~ 231 (1097)
.|.-.|..++.+++.++....+
T Consensus 418 ~V~~~l~el~~ei~~~~~~~~~ 439 (581)
T KOG0995|consen 418 YVKPLLKELLDEISEELHEAEN 439 (581)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777787777765543
No 145
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=47.27 E-value=7.1 Score=44.11 Aligned_cols=18 Identities=44% Similarity=0.549 Sum_probs=14.0
Q ss_pred eEEeeccCCCCcceeecC
Q 001334 447 CIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM~G 464 (1097)
.|.-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 344559999999999843
No 146
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=46.84 E-value=6 Score=38.00 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=13.4
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 567999999999987
No 147
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=46.82 E-value=7.1 Score=45.67 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=19.3
Q ss_pred hhhHhhhc-CCcceeEEeeccCCCCcceeec
Q 001334 434 QPLVRSVL-DGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 434 ~PLV~svL-dGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
..++..++ .|.| |+-.|.||||||++|-
T Consensus 152 ~~~l~~~v~~~~n--ilI~G~tGSGKTTll~ 180 (344)
T PRK13851 152 EAFLHACVVGRLT--MLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHHcCCe--EEEECCCCccHHHHHH
Confidence 34444444 3444 6668999999999984
No 148
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=46.50 E-value=7.2 Score=46.32 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=16.1
Q ss_pred ceeEEeeccCCCCcceeec
Q 001334 445 NVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM~ 463 (1097)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3577889999999999983
No 149
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=46.23 E-value=6.4 Score=43.27 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=15.3
Q ss_pred cceeEEeeccCCCCcceeecC
Q 001334 444 FNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM~G 464 (1097)
.+..++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 456677778899999999853
No 150
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=46.05 E-value=8.3 Score=36.65 Aligned_cols=15 Identities=47% Similarity=0.419 Sum_probs=13.0
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 577899999999875
No 151
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=46.01 E-value=1.3e+02 Score=31.74 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 300 DRHQKQLQELKLQYLETKGEVKEIQ 324 (1097)
Q Consensus 300 ~~~~~~l~~lk~~~~~~k~~~~~~~ 324 (1097)
...+..+..++..+..+..++.+++
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 152
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=45.83 E-value=88 Score=33.58 Aligned_cols=44 Identities=25% Similarity=0.353 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 308 ELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQKV 351 (1097)
Q Consensus 308 ~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 351 (1097)
+|...+..+.+++.+...++++++++++..+..++.+....+.+
T Consensus 106 eL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~L 149 (171)
T PF04799_consen 106 ELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTL 149 (171)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777778888888888888888888888888776665544
No 153
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=45.61 E-value=9.4 Score=45.16 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=19.9
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|..+++|.| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4556778887 778899999999863
No 154
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=45.41 E-value=65 Score=30.33 Aligned_cols=28 Identities=46% Similarity=0.647 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001334 710 IRELREEISNLKQTLEKKEAELEQLRRG 737 (1097)
Q Consensus 710 i~eLreEI~~LK~~L~~~e~eleqlr~~ 737 (1097)
|.++++|...||.+|.++++||++.++.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999998765
No 155
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=45.35 E-value=8.6 Score=40.79 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=15.0
Q ss_pred CcceeEEeeccCCCCcceee
Q 001334 443 GFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 443 GyNvcIfAYGQTGSGKTyTM 462 (1097)
..-..||..||.|||||+++
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 34467899999999998876
No 156
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=44.16 E-value=13 Score=47.36 Aligned_cols=35 Identities=26% Similarity=0.516 Sum_probs=26.6
Q ss_pred HHHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 428 QIYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 428 eVF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
.||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 70 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 70 HVFAIADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 36765544444433 689999999999999999986
No 157
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=44.13 E-value=14 Score=47.12 Aligned_cols=35 Identities=29% Similarity=0.479 Sum_probs=27.9
Q ss_pred HHHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 428 QIYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 428 eVF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
-||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 47766655555554 599999999999999999986
No 158
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=44.06 E-value=9.5 Score=44.71 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=20.7
Q ss_pred hhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 434 QPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 434 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
..++..++++. +-|+-.|-||||||+++
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 34455555555 67888999999999886
No 159
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=44.04 E-value=15 Score=47.01 Aligned_cols=18 Identities=44% Similarity=0.674 Sum_probs=15.1
Q ss_pred ceeEEeeccCCCCcceee
Q 001334 445 NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM 462 (1097)
|-.++.+|+||||||+-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 455677899999999887
No 160
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=44.03 E-value=10 Score=46.64 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=24.1
Q ss_pred hhhhhHhhhcCCcc--eeEEeeccCCCCcceee
Q 001334 432 DTQPLVRSVLDGFN--VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 432 ev~PLV~svLdGyN--vcIfAYGQTGSGKTyTM 462 (1097)
+++..++..+.|.. ..++-+|++|+|||.|+
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 46677777666653 46778999999999998
No 161
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=43.87 E-value=13 Score=47.32 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=27.4
Q ss_pred HHHHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 427 EQIYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 427 eeVF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
-.||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 346766544444443 689999999999999999987
No 162
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=43.84 E-value=10 Score=44.80 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=19.0
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..++.|.|+ ++-++||||||.+.
T Consensus 38 aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCcE--EEECCCCchHHHHH
Confidence 45567889885 45669999999764
No 163
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=43.81 E-value=7.7 Score=38.19 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=13.3
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 577999999999876
No 164
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=43.79 E-value=18 Score=40.31 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=28.5
Q ss_pred eCCCCChHHHHhhhhhhHhhhcC-C-cceeEEeeccCCCCccee
Q 001334 420 FAPNVSQEQIYVDTQPLVRSVLD-G-FNVCIFAYGQTGSGKTYT 461 (1097)
Q Consensus 420 F~~~atQeeVF~ev~PLV~svLd-G-yNvcIfAYGQTGSGKTyT 461 (1097)
|++-..|+.+-.....+++.+.. | .=..++-||+.|.|||..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 45556789999888888887753 2 223467799999999854
No 165
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=43.60 E-value=12 Score=47.44 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=28.1
Q ss_pred HHHHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 427 EQIYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 427 eeVF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 346766655555554 599999999999999999986
No 166
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=43.48 E-value=14 Score=47.15 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=26.7
Q ss_pred HHHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 428 QIYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 428 eVF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
.||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 76 Hiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 76 HIFAIADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 46765544444433 689999999999999999986
No 167
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.38 E-value=1.4e+02 Score=33.40 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 001334 308 ELKLQYLETKGEVKEI 323 (1097)
Q Consensus 308 ~lk~~~~~~k~~~~~~ 323 (1097)
+||..|.++|....++
T Consensus 132 d~ke~~ee~kekl~E~ 147 (290)
T COG4026 132 DLKEDYEELKEKLEEL 147 (290)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444333333
No 168
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=43.16 E-value=14 Score=47.05 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=27.2
Q ss_pred HHHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 428 QIYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 428 eVF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
-||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYALADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 36766544444444 699999999999999999986
No 169
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=43.00 E-value=12 Score=45.00 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=20.2
Q ss_pred hhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 435 PLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 435 PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
..|..+++|.| |++..+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 34566788988 567789999999873
No 170
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=42.94 E-value=14 Score=46.93 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=27.5
Q ss_pred HHHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 428 QIYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 428 eVF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
.||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 69 HLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 47766554444444 699999999999999999986
No 171
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=42.45 E-value=15 Score=46.60 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=27.0
Q ss_pred HHHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 428 QIYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 428 eVF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
.||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 68 HIFAISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 46765544444443 699999999999999999986
No 172
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=42.05 E-value=99 Score=34.36 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001334 338 IKNLEVASSSYQKVLEENRVLYNQVQ 363 (1097)
Q Consensus 338 ~~~l~~~~~~~~~~l~err~L~N~lq 363 (1097)
.+..+.....|..++++..+|-|+++
T Consensus 185 ~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 185 KKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 33344445667777777777777765
No 173
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=41.77 E-value=11 Score=39.76 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45788999999999975
No 174
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=41.51 E-value=14 Score=46.83 Aligned_cols=31 Identities=29% Similarity=0.236 Sum_probs=21.3
Q ss_pred hhhhHhhhcC-----CcceeEEeeccCCCCcceeecC
Q 001334 433 TQPLVRSVLD-----GFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 433 v~PLV~svLd-----GyNvcIfAYGQTGSGKTyTM~G 464 (1097)
+..+++++.. |.+..|+. -+||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHHH
Confidence 4566666665 34555544 3899999999964
No 175
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=40.96 E-value=14 Score=47.18 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=27.1
Q ss_pred HHHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 428 QIYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 428 eVF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
.||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 73 HVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 36766544444443 699999999999999999986
No 176
>PRK13764 ATPase; Provisional
Probab=40.64 E-value=10 Score=47.43 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.5
Q ss_pred eeEEeeccCCCCcceeec
Q 001334 446 VCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM~ 463 (1097)
..|+..|+||||||+++.
T Consensus 258 ~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 348899999999999984
No 177
>PRK06547 hypothetical protein; Provisional
Probab=40.61 E-value=17 Score=38.29 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=18.4
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
++..+..+.---|.-+|.+|||||+.-
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344444455555666799999999865
No 178
>PRK04195 replication factor C large subunit; Provisional
Probab=40.45 E-value=16 Score=44.31 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=24.4
Q ss_pred HHHHhhhhhhHhhhcCCc-ceeEEeeccCCCCcceee
Q 001334 427 EQIYVDTQPLVRSVLDGF-NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 427 eeVF~ev~PLV~svLdGy-NvcIfAYGQTGSGKTyTM 462 (1097)
+++-..+..++.....|. .-.++-||++|+|||++.
T Consensus 20 ~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 20 EKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 444444455555555554 456778999999999887
No 179
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=40.31 E-value=2e+02 Score=33.53 Aligned_cols=12 Identities=17% Similarity=0.454 Sum_probs=6.8
Q ss_pred HHhhhhhhcCCC
Q 001334 356 RVLYNQVQDLKG 367 (1097)
Q Consensus 356 r~L~N~lqelKG 367 (1097)
+.-++.++.+.|
T Consensus 282 k~~~~~Le~~~g 293 (325)
T PF08317_consen 282 KAKVDALEKLTG 293 (325)
T ss_pred HHHHHHHHHHHC
Confidence 444566666655
No 180
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=40.10 E-value=10 Score=44.13 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=18.7
Q ss_pred hhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 434 QPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 434 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
..++..++.+. ..|+-.|.||||||.+|
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 34454444332 33566899999999998
No 181
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=39.68 E-value=17 Score=46.40 Aligned_cols=36 Identities=33% Similarity=0.458 Sum_probs=27.7
Q ss_pred HHHHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 427 EQIYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 427 eeVF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
-.||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 72 PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAIADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 347766554444444 699999999999999999886
No 182
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.43 E-value=6.2e+02 Score=28.74 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 294 DHAELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYI 338 (1097)
Q Consensus 294 ~~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~ 338 (1097)
.....+..++.+|..|+.....+..++.++...+..+...+...|
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i 264 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEI 264 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 445555666666666666666666666555554444444333333
No 183
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=39.42 E-value=17 Score=46.29 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=27.1
Q ss_pred HHHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 428 QIYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 428 eVF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
-||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 68 HIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 36765544444444 799999999999999999886
No 184
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=39.30 E-value=22 Score=45.92 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.3
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4667999999999765
No 185
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=39.24 E-value=1e+02 Score=37.51 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=19.3
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCCCCCc
Q 001334 779 VSPFHVPRYGISASLKPGINQPNDDSRSLEP 809 (1097)
Q Consensus 779 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1097)
++||-+|.-+..++.-|-+++||.+.+..+.
T Consensus 258 lrPfdlpadPlaafglPchpkpmpSlpqlee 288 (666)
T KOG4825|consen 258 LRPFDLPADPLAAFGLPCHPKPMPSLPQLEE 288 (666)
T ss_pred cCcccCCCChhhhcCCCCCCCCCCccccccC
Confidence 4566666666677777733337777666553
No 186
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=39.01 E-value=14 Score=42.30 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=24.3
Q ss_pred CChHHHHhhhhhhHhhhcC--CcceeEEeeccCCCCcceeec
Q 001334 424 VSQEQIYVDTQPLVRSVLD--GFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 424 atQeeVF~ev~PLV~svLd--GyNvcIfAYGQTGSGKTyTM~ 463 (1097)
..|+++-.....++..... +.-..++-||++|+|||+...
T Consensus 28 vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 3455555544444444322 222356679999999999874
No 187
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=38.98 E-value=5.6e+02 Score=34.12 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=32.4
Q ss_pred ccCCCCC---CCCCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHH
Q 001334 4 GASGTLP---KEPSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVK 76 (1097)
Q Consensus 4 v~~~~l~---~~~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~ 76 (1097)
|+|+++- .-.+...|+.+.==||||=...-+ .-|+|.- ...|.|-+|-+-|.+.-+
T Consensus 14 vtgknl~G~VayvG~T~FA~G~WvGVvLDep~GK-NnGsVqg----------------~qYF~Cd~ncG~FVr~sq 72 (1243)
T KOG0971|consen 14 VTGKNLQGTVAYVGQTQFAEGKWVGVVLDEPKGK-NNGSVQG----------------VQYFECDENCGVFVRSSQ 72 (1243)
T ss_pred eccCCccceEEEecccccccCceEEEEeccccCC-CCCcccc----------------eeeEecCCCcceEeehhh
Confidence 4555543 124555677777777776543332 2244421 134889999998888754
No 188
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=38.79 E-value=1.8e+02 Score=31.28 Aligned_cols=67 Identities=22% Similarity=0.274 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 001334 295 HAELTDRHQKQLQELKLQYLETKGEVKEIQSN---WEEELYRLEHYIKNLEVASSSYQKVLEENRVLYNQVQD 364 (1097)
Q Consensus 295 ~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~---~~~~~~~l~~~~~~l~~~~~~~~~~l~err~L~N~lqe 364 (1097)
....|..++.++..|+..+..++.++++.... +++++.-|.-++..+ ...+.++-.|++.|-..+.+
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~---e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML---EEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566665555555555554433 233444343333333 34555556666666555443
No 189
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=38.35 E-value=18 Score=42.06 Aligned_cols=17 Identities=41% Similarity=0.598 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
--.+-||+.|+|||.|.
T Consensus 58 p~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTA 74 (346)
T ss_pred ceEEeeCCCCCcHhHHH
Confidence 34567999999999997
No 190
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=38.29 E-value=33 Score=39.48 Aligned_cols=66 Identities=24% Similarity=0.364 Sum_probs=0.0
Q ss_pred hhhcCCcceeEEeeccCCCCcceee-------cCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEE--ecc
Q 001334 438 RSVLDGFNVCIFAYGQTGSGKTYTM-------SGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEI--YNE 508 (1097)
Q Consensus 438 ~svLdGyNvcIfAYGQTGSGKTyTM-------~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEI--YNE 508 (1097)
.++-+||..-|+|.|.||-|||..| ++....+...+++--++..+=.+.. ...+.+..++- |.+
T Consensus 35 ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEs-------nvrlKLtiv~tvGfGD 107 (406)
T KOG3859|consen 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQES-------NVRLKLTIVDTVGFGD 107 (406)
T ss_pred HHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhc-------CeeEEEEEEeeccccc
Q ss_pred ee
Q 001334 509 QV 510 (1097)
Q Consensus 509 ~V 510 (1097)
+|
T Consensus 108 Qi 109 (406)
T KOG3859|consen 108 QI 109 (406)
T ss_pred cc
No 191
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=38.06 E-value=12 Score=44.30 Aligned_cols=18 Identities=39% Similarity=0.407 Sum_probs=15.0
Q ss_pred eeEEeeccCCCCcceeec
Q 001334 446 VCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM~ 463 (1097)
..|.-+|+||+|||+|+.
T Consensus 138 ~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTA 155 (374)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 455679999999999984
No 192
>PHA00729 NTP-binding motif containing protein
Probab=37.80 E-value=19 Score=39.91 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=19.4
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
++..+..|--..|+.+|.+|+||||...
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 3444443322468899999999998764
No 193
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=37.23 E-value=13 Score=41.24 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=13.8
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
-++-||++|+|||++.
T Consensus 44 ~vll~GppGtGKTtlA 59 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVA 59 (261)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4667999999999987
No 194
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=37.18 E-value=16 Score=40.85 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=15.6
Q ss_pred CcceeEEeeccCCCCcceee
Q 001334 443 GFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 443 GyNvcIfAYGQTGSGKTyTM 462 (1097)
|...-++-||+.|+|||+++
T Consensus 36 ~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 36 KNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44334677999999999876
No 195
>PLN03025 replication factor C subunit; Provisional
Probab=36.98 E-value=16 Score=41.81 Aligned_cols=42 Identities=24% Similarity=0.383 Sum_probs=24.2
Q ss_pred eceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 416 FNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 416 FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
||.|.+ |+++....+.++. .|.-..++-||+.|+|||++...
T Consensus 12 l~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 12 LDDIVG----NEDAVSRLQVIAR---DGNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred HHHhcC----cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHHH
Confidence 555543 4455444333332 23222355699999999998853
No 196
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=36.63 E-value=15 Score=44.21 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=20.2
Q ss_pred hhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 435 PLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 435 PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
..+..+++|.|+.+ ..+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 45667889999765 559999999764
No 197
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.48 E-value=17 Score=43.79 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=19.8
Q ss_pred hhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 435 PLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 435 PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
..|..++.|.++ ++..+||||||.+.
T Consensus 18 ~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 346677889975 45579999999864
No 198
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.47 E-value=6.4e+02 Score=32.63 Aligned_cols=58 Identities=26% Similarity=0.273 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001334 306 LQELKLQYLETKGEVKEI------QSNWEEELYRLEHYIKNLEVASSSYQKVLEENRVLYNQVQ 363 (1097)
Q Consensus 306 l~~lk~~~~~~k~~~~~~------~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~err~L~N~lq 363 (1097)
+.+|...+...+.++..+ -..|+++++.|+.+++.++...+.|-.+.-++-.|-..++
T Consensus 253 l~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~ 316 (716)
T KOG4593|consen 253 LEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQ 316 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334444555555555433 2358899999999999888887777766656655554444
No 199
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=36.45 E-value=37 Score=43.19 Aligned_cols=37 Identities=27% Similarity=0.619 Sum_probs=26.9
Q ss_pred HHHhhhhhhHhhhc--CCcceeEEeeccCCCCcceeecC
Q 001334 428 QIYVDTQPLVRSVL--DGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 428 eVF~ev~PLV~svL--dGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
.-|.++...+.+++ +|--+|+.--|..|||||.|+.+
T Consensus 403 ~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~ 441 (767)
T KOG1514|consen 403 NEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLE 441 (767)
T ss_pred HHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHH
Confidence 34444444555554 47777999999999999999854
No 200
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=36.27 E-value=16 Score=45.41 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=20.2
Q ss_pred hhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 435 PLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 435 PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+|..+++|.|++ +..+||+|||.+.
T Consensus 20 ~~i~~il~g~dvl--v~~PTG~GKTl~y 45 (591)
T TIGR01389 20 EIISHVLDGRDVL--VVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHcCCCEE--EEcCCCccHhHHH
Confidence 4566788999864 4569999999874
No 201
>PRK10536 hypothetical protein; Provisional
Probab=36.11 E-value=17 Score=41.17 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=26.8
Q ss_pred EeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 414 FLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
|.|..|-+-+..|..... .+.+ +.-++..|.+|+||||...
T Consensus 52 ~~~~~i~p~n~~Q~~~l~-------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 52 RDTSPILARNEAQAHYLK-------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred cCCccccCCCHHHHHHHH-------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 555555555555655433 2233 2478999999999999863
No 202
>PRK06851 hypothetical protein; Provisional
Probab=35.56 E-value=1.3e+02 Score=35.99 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=23.5
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.++.++++.+-.++--|.+|+|||..|
T Consensus 205 ~~~~l~~~~~~~~~i~G~pG~GKstl~ 231 (367)
T PRK06851 205 FVPSLTEGVKNRYFLKGRPGTGKSTML 231 (367)
T ss_pred hHHhHhcccceEEEEeCCCCCcHHHHH
Confidence 566777888999999999999999877
No 203
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=35.42 E-value=17 Score=46.62 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=22.8
Q ss_pred hHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 426 QEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 426 QeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
|+.+-.....+...+-.|.-..++-||++|+|||++..
T Consensus 33 Qe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 33 QDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 45554332233333333444467779999999998874
No 204
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.35 E-value=16 Score=42.64 Aligned_cols=16 Identities=50% Similarity=0.625 Sum_probs=13.1
Q ss_pred eeEEeeccCCCCccee
Q 001334 446 VCIFAYGQTGSGKTYT 461 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyT 461 (1097)
+-|+..|+||||||+.
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 3477899999999963
No 205
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=35.28 E-value=14 Score=44.02 Aligned_cols=38 Identities=32% Similarity=0.605 Sum_probs=26.2
Q ss_pred eEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecc
Q 001334 447 CIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNE 508 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE 508 (1097)
-|+-||.+||||||++ +.+|...+.. .|++.++|-|.=
T Consensus 32 ~~~iyG~sgTGKT~~~------------------r~~l~~~n~~------~vw~n~~ecft~ 69 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLV------------------RQLLRKLNLE------NVWLNCVECFTY 69 (438)
T ss_pred eEEEeccCCCchhHHH------------------HHHHhhcCCc------ceeeehHHhccH
Confidence 3589999999999987 2455544221 367777777753
No 206
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=35.23 E-value=16 Score=41.43 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=18.4
Q ss_pred CCcceeEEeeccCCCCcceee
Q 001334 442 DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 442 dGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 388999999999999998654
No 207
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=35.19 E-value=14 Score=49.57 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=18.9
Q ss_pred HhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
+.++.+|...+++ ..+||||||+||.+
T Consensus 426 ~~a~~~g~r~~Ll-~maTGSGKT~tai~ 452 (1123)
T PRK11448 426 EKAIVEGQREILL-AMATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHhccCCeEE-EeCCCCCHHHHHHH
Confidence 3444457655444 48999999999865
No 208
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=35.15 E-value=23 Score=42.75 Aligned_cols=17 Identities=47% Similarity=0.550 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
..|+-.|++|+|||+|+
T Consensus 242 ~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL 258 (436)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46788999999999998
No 209
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=34.84 E-value=2.8e+02 Score=37.57 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=10.1
Q ss_pred cCChhhHHHHHHHHhhhhh
Q 001334 91 GGSSSKVVDCILCLKGYYE 109 (1097)
Q Consensus 91 ~kn~~kVv~cLlaLks~~~ 109 (1097)
|..=..|||.++=..+|--
T Consensus 118 GSGKSNVIDsmLFVFGfRA 136 (1293)
T KOG0996|consen 118 GSGKSNVIDSMLFVFGFRA 136 (1293)
T ss_pred CCCchHHHHHHHHHhhhhH
Confidence 3344467776665544433
No 210
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=34.77 E-value=16 Score=45.95 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=24.1
Q ss_pred ccccCCCCcccccchhHHHhhhhhhhccccc
Q 001334 913 RVYIGSQEPAKQQDNVLDALSSLQKVSHRSK 943 (1097)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1097)
++.||+..-++ |-+|..++.|-..++-+.+
T Consensus 490 ~~~~g~~~~~~-~~~~~~~i~~~~~~~~~~i 519 (629)
T PRK11634 490 RIEVGRDDGVE-VRHIVGAIANEGDISSRYI 519 (629)
T ss_pred EEecccccCCC-HHHHHHHHHhhcCCChhhC
Confidence 45889999998 9999999998887765543
No 211
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.71 E-value=1.5e+02 Score=32.61 Aligned_cols=25 Identities=8% Similarity=0.209 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 297 ELTDRHQKQLQELKLQYLETKGEVK 321 (1097)
Q Consensus 297 ~~l~~~~~~l~~lk~~~~~~k~~~~ 321 (1097)
.-+..++.+|.++..++.+.+.+++
T Consensus 100 ~el~~l~~~l~~~~~~~~~~~~~l~ 124 (206)
T PRK10884 100 NQVKTLTDKLNNIDNTWNQRTAEMQ 124 (206)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344444455554444444444333
No 212
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=34.41 E-value=5.3e+02 Score=32.90 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 293 CDHAELTDRHQKQLQELKLQYLETKGE 319 (1097)
Q Consensus 293 ~~~~~~l~~~~~~l~~lk~~~~~~k~~ 319 (1097)
++++.+++.....+.+|..++...+..
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qWe~~R~p 423 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQWEKHRAP 423 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445566666666666666655554443
No 213
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=34.31 E-value=30 Score=41.85 Aligned_cols=20 Identities=40% Similarity=0.405 Sum_probs=16.4
Q ss_pred cceeEEeeccCCCCcceeec
Q 001334 444 FNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM~ 463 (1097)
.-..|+-+|.+|+|||+|..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 34577888999999999973
No 214
>PF05729 NACHT: NACHT domain
Probab=34.30 E-value=16 Score=36.13 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=14.3
Q ss_pred eEEeeccCCCCcceeec
Q 001334 447 CIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM~ 463 (1097)
.++-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 36789999999999883
No 215
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.28 E-value=3.1e+02 Score=31.56 Aligned_cols=15 Identities=40% Similarity=0.784 Sum_probs=12.5
Q ss_pred eEEeeccCCCCccee
Q 001334 447 CIFAYGQTGSGKTYT 461 (1097)
Q Consensus 447 cIfAYGQTGSGKTyT 461 (1097)
-++-||+.|+|||..
T Consensus 183 GvlLygppgtGktLl 197 (404)
T KOG0728|consen 183 GVLLYGPPGTGKTLL 197 (404)
T ss_pred ceEEecCCCCchhHH
Confidence 478899999999853
No 216
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=34.18 E-value=22 Score=45.11 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=26.4
Q ss_pred HHHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 428 QIYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 428 eVF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
.||..+......++ .+.|-||+.-|.+|||||.|+
T Consensus 68 HifavA~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 68 HIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 46765444444443 588999999999999999987
No 217
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=34.02 E-value=1e+03 Score=30.79 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 001334 184 DRFGLRLLQAYLRESNGIEEFPLNAMIIDTLLGKVVKDFSAVLVSQGTQLGLFLKK 239 (1097)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 239 (1097)
..+++.++.+|+.+..+...--. .-.-..|.+-+.+++.+|.....++..|.++
T Consensus 243 a~ilN~la~~Yi~~~l~~k~~~a--~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 243 TRILNSIANNYLQQNIARQAAQD--SQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777765321110000 0012356666677777777776666666554
No 218
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=33.62 E-value=1.9e+02 Score=34.97 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC--
Q 001334 294 DHAELTDRHQKQLQELKLQYLETKGEVKEIQSNW------EEELYRLEHYIKNLEVASSSYQKVLEENRVLYNQVQDL-- 365 (1097)
Q Consensus 294 ~~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~------~~~~~~l~~~~~~l~~~~~~~~~~l~err~L~N~lqel-- 365 (1097)
.+.+.+..+.+++++++..+..++..+..+...- .+....+.............+.++..+...|.++++..
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~ 410 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERSYK 410 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445556667777777777777777665554410 11222233333333334445555555666777777776
Q ss_pred CCCEEEEEEeCC
Q 001334 366 KGTIRVYCRVRP 377 (1097)
Q Consensus 366 KGnIRV~cRVRP 377 (1097)
.+.|.|.=++.|
T Consensus 411 ~~~I~v~~~vyp 422 (451)
T PF03961_consen 411 EARIKVRKRVYP 422 (451)
T ss_pred ceEEEECCEEEC
Confidence 344555555666
No 219
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=33.41 E-value=21 Score=42.70 Aligned_cols=38 Identities=34% Similarity=0.538 Sum_probs=29.0
Q ss_pred CChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCccee
Q 001334 424 VSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYT 461 (1097)
Q Consensus 424 atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyT 461 (1097)
..|+.+.....+|=.-+-.|.=...+-||+.|+|||..
T Consensus 27 vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred cChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 34677776666666666677777888899999999964
No 220
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.32 E-value=45 Score=40.31 Aligned_cols=44 Identities=30% Similarity=0.502 Sum_probs=28.4
Q ss_pred eEEeeccCCCCcce--------------eecCCCCCcccccCchHHHHHHHHHHhhhcCC
Q 001334 447 CIFAYGQTGSGKTY--------------TMSGPDLTAEETWGVNYRALRDLFQISNTRGD 492 (1097)
Q Consensus 447 cIfAYGQTGSGKTy--------------TM~G~~~~~~e~~GIipRal~~LF~~~~~~~~ 492 (1097)
-|+-||+.|+|||- .|.|.+..+-...|+ -.++.||+..+....
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaV--TkiH~lFDWakkS~r 443 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAV--TKIHKLFDWAKKSRR 443 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHH--HHHHHHHHHHhhccc
Confidence 47899999999983 244544333222233 468899998765543
No 221
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=33.27 E-value=22 Score=45.89 Aligned_cols=35 Identities=31% Similarity=0.461 Sum_probs=27.1
Q ss_pred HHHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 428 QIYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 428 eVF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
.||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 68 HIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 47766544444444 699999999999999999886
No 222
>PRK00131 aroK shikimate kinase; Reviewed
Probab=33.15 E-value=19 Score=36.21 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
.+|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999874
No 223
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=33.15 E-value=15 Score=35.88 Aligned_cols=16 Identities=50% Similarity=0.733 Sum_probs=13.3
Q ss_pred EEeeccCCCCcceeec
Q 001334 448 IFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM~ 463 (1097)
++-||.+|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4569999999999773
No 224
>PRK11637 AmiB activator; Provisional
Probab=32.90 E-value=4.6e+02 Score=31.52 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=9.5
Q ss_pred CCCceEEEEEEEEe
Q 001334 572 SSRSHSVLTVHVLG 585 (1097)
Q Consensus 572 SSRSHaIftI~V~~ 585 (1097)
+...|+-|.|+..+
T Consensus 404 ~~~~~l~fei~~~~ 417 (428)
T PRK11637 404 QGRPSLYFEIRRQG 417 (428)
T ss_pred CCCCeEEEEEEECC
Confidence 34578888887644
No 225
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=32.89 E-value=20 Score=44.58 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=19.7
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|..+++|.|+ ++.++||||||.+.
T Consensus 39 ~ip~~l~G~Dv--i~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGDV--AGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCCE--EEEcCCCCcHHHHH
Confidence 45668899995 55789999999764
No 226
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=32.36 E-value=17 Score=40.14 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=16.7
Q ss_pred ceeEEeeccCCCCcceeecC
Q 001334 445 NVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM~G 464 (1097)
...++-||..|+|||++.-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 35689999999999998754
No 227
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.23 E-value=2.4e+02 Score=36.85 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=9.1
Q ss_pred hHHHHHHHHhhhhhh
Q 001334 96 KVVDCILCLKGYYEW 110 (1097)
Q Consensus 96 kVv~cLlaLks~~~~ 110 (1097)
--+||+.|+..|+..
T Consensus 268 ~~lD~l~a~a~~a~~ 282 (771)
T TIGR01069 268 DFLDSLQARARYAKA 282 (771)
T ss_pred HHHHHHHHHHHHHHH
Confidence 446677777666553
No 228
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=31.99 E-value=17 Score=43.61 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=14.2
Q ss_pred eEEeeccCCCCcceeec
Q 001334 447 CIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM~ 463 (1097)
+|+-.|+||+|||+|+.
T Consensus 223 ~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 223 VVALVGPTGVGKTTTLA 239 (424)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 55666999999999984
No 229
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=31.54 E-value=19 Score=41.16 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=13.6
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
-.|+-||++|+|||++-
T Consensus 152 knVLFyGppGTGKTm~A 168 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ceeEEECCCCccHHHHH
Confidence 34677999999998764
No 230
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=31.53 E-value=23 Score=43.07 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=23.7
Q ss_pred cCCCceeeEEEecCCCCCcHHHHHHHHHHHH--Hhccccccc
Q 001334 661 LGGHAKTLMFVHINPEHNAIGETISTLKFAE--RVSSIELGA 700 (1097)
Q Consensus 661 LGGnSkTlMIa~ISP~~~~~~ETLsTLrFAs--Rak~I~~~~ 700 (1097)
+.-.....+|+|++..+.+ +..|.+|- |..-|++.+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhhhheEEecC
Confidence 4456788999999998754 44566654 444555544
No 231
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=31.40 E-value=26 Score=42.90 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=19.1
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..++.|.|+ ++..+||||||.+.
T Consensus 151 aip~il~g~dv--iv~ApTGSGKTlay 175 (518)
T PLN00206 151 AIPAALSGRSL--LVSADTGSGKTASF 175 (518)
T ss_pred HHHHHhcCCCE--EEEecCCCCccHHH
Confidence 45667889874 66779999999653
No 232
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=31.31 E-value=21 Score=40.38 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=18.9
Q ss_pred CCcceeEEeeccCCCCcceee
Q 001334 442 DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 442 dGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999998765
No 233
>PHA02653 RNA helicase NPH-II; Provisional
Probab=31.27 E-value=27 Score=44.48 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=18.0
Q ss_pred hHhhhcCCcceeEEeeccCCCCccee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYT 461 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyT 461 (1097)
++..+++|.++ +..|+||||||..
T Consensus 172 il~~i~~gkdv--Iv~A~TGSGKTtq 195 (675)
T PHA02653 172 IFEAWISRKPV--VLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHhCCCE--EEECCCCCCchhH
Confidence 44555667654 7899999999975
No 234
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=31.12 E-value=4.5e+02 Score=32.10 Aligned_cols=8 Identities=13% Similarity=0.243 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 001334 330 ELYRLEHY 337 (1097)
Q Consensus 330 ~~~~l~~~ 337 (1097)
+..++...
T Consensus 197 q~~kl~~~ 204 (420)
T COG4942 197 QQAKLAQL 204 (420)
T ss_pred HHHHHHHH
Confidence 33333333
No 235
>PRK15396 murein lipoprotein; Provisional
Probab=31.12 E-value=2.2e+02 Score=27.01 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 299 TDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLE 335 (1097)
Q Consensus 299 l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~ 335 (1097)
+++++.+++.|+.+...+...+..++...+..-.+..
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~ 63 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAA 63 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777666665544433333
No 236
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.71 E-value=25 Score=39.88 Aligned_cols=28 Identities=39% Similarity=0.564 Sum_probs=21.6
Q ss_pred hhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 434 QPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 434 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.||+ ..+.--+..+--||+|++|||.++
T Consensus 183 ~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 183 APLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 4555 445566678889999999999887
No 237
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=30.65 E-value=4.4e+02 Score=28.61 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhhhhc
Q 001334 347 SYQKVLEENRVLYNQVQD 364 (1097)
Q Consensus 347 ~~~~~l~err~L~N~lqe 364 (1097)
.|++.-++|+..||.+-+
T Consensus 163 ~~~~~wrk~krmf~ei~d 180 (201)
T KOG4603|consen 163 KYCKEWRKRKRMFREIID 180 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556667778887654
No 238
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=30.45 E-value=4.5e+02 Score=28.70 Aligned_cols=17 Identities=24% Similarity=0.514 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhhhh
Q 001334 345 SSSYQKVLEENRVLYNQ 361 (1097)
Q Consensus 345 ~~~~~~~l~err~L~N~ 361 (1097)
...|.++..||..||..
T Consensus 113 ~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 113 EQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 239
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.18 E-value=23 Score=44.82 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=23.7
Q ss_pred ChHHHHhhhhhhHhhhcCCc--ceeEEeeccCCCCcceeec
Q 001334 425 SQEQIYVDTQPLVRSVLDGF--NVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 425 tQeeVF~ev~PLV~svLdGy--NvcIfAYGQTGSGKTyTM~ 463 (1097)
-|.....++..++..+.-+. .-+++-||++|+|||.++.
T Consensus 88 ~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 88 VHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred CcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHH
Confidence 34444444444455443322 1247789999999999873
No 240
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=30.18 E-value=27 Score=40.88 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=14.4
Q ss_pred EEeeccCCCCcceeecC
Q 001334 448 IFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM~G 464 (1097)
++.+|.||||||+++.=
T Consensus 2 ~lv~g~tGsGKt~~~vi 18 (384)
T cd01126 2 VLVFAPTRSGKGVGFVI 18 (384)
T ss_pred eeEecCCCCCCccEEEc
Confidence 56799999999998753
No 241
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.04 E-value=2.7e+02 Score=29.08 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 299 TDRHQKQLQELKLQYLETKGEVKEI 323 (1097)
Q Consensus 299 l~~~~~~l~~lk~~~~~~k~~~~~~ 323 (1097)
+.+++.++.+|+.++..++.+...+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444
No 242
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=29.88 E-value=30 Score=44.32 Aligned_cols=42 Identities=36% Similarity=0.479 Sum_probs=28.1
Q ss_pred eeeCCCCChHHHHhh-h------hhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 418 KVFAPNVSQEQIYVD-T------QPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 418 ~VF~~~atQeeVF~e-v------~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+-+++++-|..+|.. . ..+++.+| |.|+.|-+ +||+|||+.-
T Consensus 45 ~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 45 HSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred CCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 334455555555522 1 35788899 99987654 9999999863
No 243
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=29.74 E-value=22 Score=35.43 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=12.6
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|+-.|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 577899999998764
No 244
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.74 E-value=31 Score=40.89 Aligned_cols=46 Identities=28% Similarity=0.581 Sum_probs=31.1
Q ss_pred eEEeeccCCCCcceee--------------cCCCCCcccccCchHHHHHHHHHHhhhcCCc
Q 001334 447 CIFAYGQTGSGKTYTM--------------SGPDLTAEETWGVNYRALRDLFQISNTRGDM 493 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM--------------~G~~~~~~e~~GIipRal~~LF~~~~~~~~~ 493 (1097)
-|+-||+.|+|||-.- .|+.. -..-.|==+|.+++||.....+...
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl-VqKYiGEGaRlVRelF~lArekaPs 246 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL-VQKYIGEGARLVRELFELAREKAPS 246 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH-HHHHhccchHHHHHHHHHHhhcCCe
Confidence 3788999999998532 12110 0112355689999999998887664
No 245
>PHA00276 phage lambda Rz-like lysis protein
Probab=29.69 E-value=2.3e+02 Score=29.73 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=12.9
Q ss_pred CCCEEEEEEeCCCCC
Q 001334 366 KGTIRVYCRVRPFLP 380 (1097)
Q Consensus 366 KGnIRV~cRVRP~~~ 380 (1097)
.||+|+-+|++|...
T Consensus 81 sGn~RLqvr~~a~s~ 95 (144)
T PHA00276 81 SDNKRLRVRLKPTSG 95 (144)
T ss_pred cCCceEEeeeecccc
Confidence 599999999999743
No 246
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=29.57 E-value=19 Score=42.79 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
--++.+|.||||||..|
T Consensus 43 ~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 43 AHTMIIGTTGTGKTTQI 59 (410)
T ss_pred ccEEEEcCCCCCHHHHH
Confidence 35678999999999876
No 247
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=29.37 E-value=36 Score=39.43 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCcceeec
Q 001334 446 VCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM~ 463 (1097)
..|.-.|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456667999999999983
No 248
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=29.31 E-value=23 Score=36.44 Aligned_cols=14 Identities=43% Similarity=0.750 Sum_probs=12.6
Q ss_pred EEeeccCCCCccee
Q 001334 448 IFAYGQTGSGKTYT 461 (1097)
Q Consensus 448 IfAYGQTGSGKTyT 461 (1097)
|+.+|..|||||+.
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999876
No 249
>PRK14974 cell division protein FtsY; Provisional
Probab=29.26 E-value=36 Score=39.89 Aligned_cols=19 Identities=42% Similarity=0.510 Sum_probs=16.5
Q ss_pred cceeEEeeccCCCCcceee
Q 001334 444 FNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM 462 (1097)
...+|.-.|.+|+|||.|+
T Consensus 139 ~~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3467888999999999998
No 250
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=29.25 E-value=20 Score=43.90 Aligned_cols=18 Identities=39% Similarity=0.407 Sum_probs=15.4
Q ss_pred eeEEeeccCCCCcceeec
Q 001334 446 VCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM~ 463 (1097)
.+|.-.|+||+|||+|+-
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 467788999999999983
No 251
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=29.15 E-value=21 Score=40.40 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=18.6
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
+++..+.. +--++-+|++|+|||-++.
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHHH
Confidence 44444432 4456789999999998873
No 252
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=29.14 E-value=31 Score=41.40 Aligned_cols=18 Identities=44% Similarity=0.527 Sum_probs=15.1
Q ss_pred ceeEEeeccCCCCcceee
Q 001334 445 NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM 462 (1097)
...|.-.|+||-|||+|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 455666899999999998
No 253
>PF13173 AAA_14: AAA domain
Probab=28.56 E-value=22 Score=35.01 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=14.2
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.++-+|+.|+|||+.|
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999987
No 254
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=28.49 E-value=29 Score=41.07 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=38.3
Q ss_pred ec-eeeCCCCChHHHHhhhhhhHhhhcCC---cceeEEeeccCCCCccee---------------------ecC----CC
Q 001334 416 FN-KVFAPNVSQEQIYVDTQPLVRSVLDG---FNVCIFAYGQTGSGKTYT---------------------MSG----PD 466 (1097)
Q Consensus 416 FD-~VF~~~atQeeVF~ev~PLV~svLdG---yNvcIfAYGQTGSGKTyT---------------------M~G----~~ 466 (1097)
|| .|||.+...+++.+ .+.+...| .+..+.-.|++|||||.. +.| ++
T Consensus 49 F~~~~~G~~~~i~~lv~----~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp 124 (361)
T smart00763 49 FDHDFFGMEEAIERFVN----YFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESP 124 (361)
T ss_pred cchhccCcHHHHHHHHH----HHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCC
Confidence 45 67775444333332 33333333 456678899999999843 333 22
Q ss_pred CCcccccCchHHHHHHHHH
Q 001334 467 LTAEETWGVNYRALRDLFQ 485 (1097)
Q Consensus 467 ~~~~e~~GIipRal~~LF~ 485 (1097)
..++-.||+|...+..|.
T Consensus 125 -~~e~Pl~l~p~~~r~~~~ 142 (361)
T smart00763 125 -MHEDPLHLFPDELREDLE 142 (361)
T ss_pred -CccCCcccCCHHHHHHHH
Confidence 123345888888888874
No 255
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=28.48 E-value=27 Score=40.70 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=20.1
Q ss_pred hhhcCCcceeEEeeccCCCCcceee
Q 001334 438 RSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 438 ~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+.+.+|.+..++..++||||||.+.
T Consensus 7 ~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 7 EALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHcCCCCEEEEECCCCCCHHHHH
Confidence 4456787777888899999999874
No 256
>PRK07261 topology modulation protein; Provisional
Probab=28.44 E-value=25 Score=36.74 Aligned_cols=15 Identities=40% Similarity=0.507 Sum_probs=12.6
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|+-.|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 667899999998765
No 257
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=28.30 E-value=31 Score=36.51 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=14.8
Q ss_pred ceeEEeeccCCCCcceee
Q 001334 445 NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM 462 (1097)
...+.-||.+|||||...
T Consensus 12 g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNIC 29 (209)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 466788999999998764
No 258
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=28.26 E-value=22 Score=36.37 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=13.8
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
...+-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 34456999999999887
No 259
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=28.21 E-value=2.6e+02 Score=31.39 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 001334 329 EELYRLEHYIK 339 (1097)
Q Consensus 329 ~~~~~l~~~~~ 339 (1097)
+++..|+..|+
T Consensus 60 ~DIn~lE~iIk 70 (230)
T PF10146_consen 60 QDINTLENIIK 70 (230)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 260
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=28.15 E-value=36 Score=36.55 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=21.3
Q ss_pred hhHhhhcCC---cceeEEeeccCCCCcceee
Q 001334 435 PLVRSVLDG---FNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 435 PLV~svLdG---yNvcIfAYGQTGSGKTyTM 462 (1097)
+-++.++.| ...++.-||++|||||..+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 446677765 4566788999999999765
No 261
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.14 E-value=37 Score=43.84 Aligned_cols=18 Identities=39% Similarity=0.423 Sum_probs=15.7
Q ss_pred eeEEeeccCCCCcceeec
Q 001334 446 VCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM~ 463 (1097)
.+|.-.|+||+|||+|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 477789999999999983
No 262
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.92 E-value=2.7e+02 Score=32.48 Aligned_cols=20 Identities=5% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 001334 211 IDTLLGKVVKDFSAVLVSQG 230 (1097)
Q Consensus 211 ~~~~l~~~~~~~~~~l~~~~ 230 (1097)
+..+...+++.++.++....
T Consensus 3 C~eC~~~l~~~l~~~~~~~~ 22 (314)
T PF04111_consen 3 CQECTDLLLEQLDKQLEQAE 22 (314)
T ss_dssp --------------------
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666665443
No 263
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=27.91 E-value=22 Score=40.53 Aligned_cols=58 Identities=33% Similarity=0.528 Sum_probs=32.6
Q ss_pred HHHHHhhCCCC----ccCCC-Cchhh-hhhhcc----CCCceeeEEEecCCCCCcHHHHHHHHHHHHHhccccccc
Q 001334 635 VISALAQKSAH----IPYRN-SKLTQ-VLQDSL----GGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGA 700 (1097)
Q Consensus 635 VI~ALa~k~~h----IPYRd-SKLTr-LLqDSL----GGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~ 700 (1097)
|++||+..... =||-- -++|| -||+-+ ..-.+|+++||= +.+|. |+.|.|+--..-|.
T Consensus 146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTH-----DidEA---~kLadri~vm~~G~ 213 (309)
T COG1125 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTH-----DIDEA---LKLADRIAVMDAGE 213 (309)
T ss_pred HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEec-----CHHHH---HhhhceEEEecCCe
Confidence 77888765432 24421 11222 244332 234689999983 56654 68898887655443
No 264
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.80 E-value=59 Score=42.03 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=17.6
Q ss_pred ccccCchHHHHHHHHHHhhhcC
Q 001334 470 EETWGVNYRALRDLFQISNTRG 491 (1097)
Q Consensus 470 ~e~~GIipRal~~LF~~~~~~~ 491 (1097)
.+.-|++-|.+.+|...+....
T Consensus 784 GDSGGVMDRVVSQLLAELDgls 805 (953)
T KOG0736|consen 784 GDSGGVMDRVVSQLLAELDGLS 805 (953)
T ss_pred CCccccHHHHHHHHHHHhhccc
Confidence 4567999999999998876544
No 265
>PRK11637 AmiB activator; Provisional
Probab=27.56 E-value=5.8e+02 Score=30.65 Aligned_cols=6 Identities=17% Similarity=0.490 Sum_probs=3.0
Q ss_pred ceeecC
Q 001334 459 TYTMSG 464 (1097)
Q Consensus 459 TyTM~G 464 (1097)
.+|++|
T Consensus 371 ~~t~Y~ 376 (428)
T PRK11637 371 DMSLYG 376 (428)
T ss_pred cEEEcc
Confidence 455554
No 266
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=27.55 E-value=4.7e+02 Score=28.94 Aligned_cols=64 Identities=20% Similarity=0.400 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001334 297 ELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQKVLEENRVLYNQVQ 363 (1097)
Q Consensus 297 ~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~err~L~N~lq 363 (1097)
.-++.++.+|...+.........+..-+..|+++..++-.|.+.| ..+|-.+...++.|-..|+
T Consensus 138 ~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQL---Q~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 138 REVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQL---QQNYVQMYQRNQALERELR 201 (202)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 344444555555544444444455555667888888888888877 4678888877777766554
No 267
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.52 E-value=1.8e+02 Score=35.77 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 001334 297 ELTDRHQKQLQELKLQYLETKGEVK---EIQSNWEEELYRLEHYIKNL 341 (1097)
Q Consensus 297 ~~l~~~~~~l~~lk~~~~~~k~~~~---~~~~~~~~~~~~l~~~~~~l 341 (1097)
..|.++|..+.+|+.++..+++++. .....++++++.++.++..|
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 4455666666777777777766665 22333444555555555444
No 268
>PTZ00014 myosin-A; Provisional
Probab=27.38 E-value=36 Score=44.34 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=26.4
Q ss_pred HHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 429 IYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 429 VF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
||..+......++ .+.|-||+.-|.+|||||.+.
T Consensus 166 ifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 166 VFTTARRALENLHGVKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 7766544444444 699999999999999999764
No 269
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=27.37 E-value=22 Score=45.61 Aligned_cols=16 Identities=38% Similarity=0.671 Sum_probs=13.7
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
-++..|.||||||++|
T Consensus 432 n~~I~G~tGsGKS~~~ 447 (797)
T TIGR02746 432 NIAVVGGSGAGKSFFM 447 (797)
T ss_pred ceEEEcCCCCCHHHHH
Confidence 3566899999999998
No 270
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=27.29 E-value=38 Score=43.06 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=27.6
Q ss_pred eCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 420 FAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 420 F~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
|.+...|..+..++ ....-.++..-++..|+||||||.+..
T Consensus 260 f~lt~~Q~~ai~~I---~~d~~~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 260 FELTGAQKRVVAEI---LADLASPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred CCCCHHHHHHHHHH---HHhhhccCCceEEEECCCCCcHHHHHH
Confidence 45667787776553 223334555567889999999998654
No 271
>PRK06696 uridine kinase; Validated
Probab=27.26 E-value=47 Score=35.96 Aligned_cols=21 Identities=29% Similarity=0.082 Sum_probs=16.7
Q ss_pred CCcceeEEeeccCCCCcceee
Q 001334 442 DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 442 dGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+....|.-.|.+|||||+..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred CCCceEEEEECCCCCCHHHHH
Confidence 455666778899999999865
No 272
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=27.21 E-value=33 Score=43.02 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=19.2
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|..++.|.++++ .++||||||.+.
T Consensus 33 ai~~il~g~dvlv--~apTGsGKTl~y 57 (607)
T PRK11057 33 IIDAVLSGRDCLV--VMPTGGGKSLCY 57 (607)
T ss_pred HHHHHHcCCCEEE--EcCCCchHHHHH
Confidence 4566788988765 479999999764
No 273
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=27.12 E-value=30 Score=45.07 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=22.1
Q ss_pred HHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 429 IYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 429 VF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
||.....+++.+-++-+ |+..|+||||||..+
T Consensus 6 i~~~~~~i~~~l~~~~~--vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 6 VAAVLPELLTALKTAPQ--VLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHHHHHHhCCC--EEEEcCCCCCHHHHH
Confidence 44444556666655443 567999999999876
No 274
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=27.00 E-value=88 Score=43.75 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=41.2
Q ss_pred CHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHh
Q 001334 14 SEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKD 77 (1097)
Q Consensus 14 s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~ 77 (1097)
-..||..-|+||+.|.+|+..|.--..||-.. ..|. ..|+|||..-|.+.++
T Consensus 67 ~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtr-GRMR-----------IH~LENvdKaLqFLke 118 (2473)
T KOG0517|consen 67 RIGDLYTDLRDGIMLLKLLEVLSGERLPKPTR-GRMR-----------IHCLENVDKALQFLKE 118 (2473)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHccccCCCCCC-Ccee-----------ehhHhhhHHHHHHHHh
Confidence 35789999999999999999997555554322 2355 7899999998888877
No 275
>PHA02562 46 endonuclease subunit; Provisional
Probab=26.92 E-value=4.5e+02 Score=32.29 Aligned_cols=148 Identities=11% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHhhh-cccCCcchHHHHHHHHHHhhcccccccCccccccccchhhHHHhhhhccch
Q 001334 215 LGKVVKDFSAVLVSQGTQLGLFLKKILK-GEVGSLSKAEFMEAISQYLGRKTSLVSGDHSKFCVCGEKREVIQHSISRSC 293 (1097)
Q Consensus 215 l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 293 (1097)
+..-++.++.++.....++..+...+.. ...-.....+..+.+.....+...+..+...-. +.+........
T Consensus 179 ~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~-------~~i~~l~~~i~ 251 (562)
T PHA02562 179 LNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELT-------DELLNLVMDIE 251 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcccc
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 294 DHAELTDRHQKQLQELKLQYLETKGEVKEI-------------------QSNWEEELYRLEHYIKNLEVASSSYQKVLEE 354 (1097)
Q Consensus 294 ~~~~~l~~~~~~l~~lk~~~~~~k~~~~~~-------------------~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~e 354 (1097)
+....|..++.++..++.++..++.....+ .+.+.+.+..++..++.++.....+.....+
T Consensus 252 ~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~ 331 (562)
T PHA02562 252 DPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE 331 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhcCCCCE
Q 001334 355 NRVLYNQVQDLKGTI 369 (1097)
Q Consensus 355 rr~L~N~lqelKGnI 369 (1097)
...+...+.+++..|
T Consensus 332 ~~~~~~~i~el~~~i 346 (562)
T PHA02562 332 FNEQSKKLLELKNKI 346 (562)
T ss_pred HHHHHHHHHHHHHHH
No 276
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=26.90 E-value=28 Score=42.42 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=27.6
Q ss_pred eEeeceeeCCCCChHHHHhhhhhhHhh-hc----CCcceeEEeeccCCCCcceee
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPLVRS-VL----DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PLV~s-vL----dGyNvcIfAYGQTGSGKTyTM 462 (1097)
...||.|.+.+...+++.+.+..+-.. .+ ....-.|+-||++|+|||+..
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 366888877654444443222211100 01 112234788999999999986
No 277
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=26.85 E-value=27 Score=36.07 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=12.7
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999998654
No 278
>PRK04328 hypothetical protein; Provisional
Probab=26.85 E-value=38 Score=37.55 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=20.5
Q ss_pred hhHhhhcCC---cceeEEeeccCCCCcce
Q 001334 435 PLVRSVLDG---FNVCIFAYGQTGSGKTY 460 (1097)
Q Consensus 435 PLV~svLdG---yNvcIfAYGQTGSGKTy 460 (1097)
+-++.+|.| ...+++-+|.+|||||.
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 456777776 57788889999999974
No 279
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=26.84 E-value=33 Score=38.24 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=17.9
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
++..+..|.+++| +|.+|+|||...
T Consensus 14 ~l~~l~~g~~vLL--~G~~GtGKT~lA 38 (262)
T TIGR02640 14 ALRYLKSGYPVHL--RGPAGTGKTTLA 38 (262)
T ss_pred HHHHHhcCCeEEE--EcCCCCCHHHHH
Confidence 3444556766654 899999999765
No 280
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=26.78 E-value=28 Score=34.09 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=12.5
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|+-.|++|||||+.-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998753
No 281
>PRK10865 protein disaggregation chaperone; Provisional
Probab=26.71 E-value=35 Score=44.70 Aligned_cols=45 Identities=24% Similarity=0.306 Sum_probs=26.9
Q ss_pred EeeceeeCCCCChHHHHhhhhhhHhhhcCCcc------eeEEeeccCCCCcceee
Q 001334 414 FLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFN------VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev~PLV~svLdGyN------vcIfAYGQTGSGKTyTM 462 (1097)
.-+.+|+|.+ ..-..+...|..+..|.. ++++-+|+||+|||++.
T Consensus 565 ~l~~~viGQ~----~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIGQN----EAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeCCH----HHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 3456677644 443333333343333322 56777899999999976
No 282
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=26.68 E-value=24 Score=36.33 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=14.0
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
+|+-.|++|||||.++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678899999999887
No 283
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=26.59 E-value=28 Score=34.56 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=13.4
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
+|+.+|..|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999998764
No 284
>PHA02244 ATPase-like protein
Probab=26.57 E-value=41 Score=40.15 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=16.0
Q ss_pred hcCCcceeEEeeccCCCCcceee
Q 001334 440 VLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 440 vLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+-.|.+++| +|+||+|||+..
T Consensus 116 l~~~~PVLL--~GppGtGKTtLA 136 (383)
T PHA02244 116 VNANIPVFL--KGGAGSGKNHIA 136 (383)
T ss_pred HhcCCCEEE--ECCCCCCHHHHH
Confidence 335666555 899999999876
No 285
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=26.53 E-value=29 Score=39.69 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=20.0
Q ss_pred hhhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 433 TQPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 433 v~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
+.+++..++.+. ..|.-.|.||||||..|-
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 345566666433 344557999999999763
No 286
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=26.52 E-value=24 Score=35.79 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=11.1
Q ss_pred EEeeccCCCCccee
Q 001334 448 IFAYGQTGSGKTYT 461 (1097)
Q Consensus 448 IfAYGQTGSGKTyT 461 (1097)
|+-.|.+|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35679999999854
No 287
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=26.40 E-value=3.3e+02 Score=35.65 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=11.8
Q ss_pred hHHHHHHHHhhhhhhh
Q 001334 96 KVVDCILCLKGYYEWK 111 (1097)
Q Consensus 96 kVv~cLlaLks~~~~K 111 (1097)
--+||++|+..|+.+.
T Consensus 273 ~~lD~l~a~a~~a~~~ 288 (782)
T PRK00409 273 DELDFIFARARYAKAL 288 (782)
T ss_pred HHHHHHHHHHHHHHHC
Confidence 4578888888877654
No 288
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.35 E-value=4.9e+02 Score=29.93 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 001334 329 EELYRLEHYIKNLE 342 (1097)
Q Consensus 329 ~~~~~l~~~~~~l~ 342 (1097)
.+++.++..|..++
T Consensus 80 ~eik~l~~eI~~~~ 93 (265)
T COG3883 80 AEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555443
No 289
>PRK13767 ATP-dependent helicase; Provisional
Probab=26.23 E-value=30 Score=45.37 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=18.5
Q ss_pred HhhhcCCcceeEEeeccCCCCcceee
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+..+++|.|+.| ..+||||||.+.
T Consensus 41 i~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 41 IPLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHHcCCCEEE--ECCCCCcHHHHH
Confidence 445678998766 559999999863
No 290
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=26.13 E-value=1.5e+02 Score=26.72 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001334 708 GEIRELREEISNLKQTLEKKEAELEQLRRGVTRN 741 (1097)
Q Consensus 708 ~~i~eLreEI~~LK~~L~~~e~eleqlr~~~~~~ 741 (1097)
.+++-|++.|..|..+..+++.|..-||......
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe 47 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNASPE 47 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 4678899999999999999999999998876544
No 291
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=26.01 E-value=30 Score=42.92 Aligned_cols=42 Identities=24% Similarity=0.218 Sum_probs=25.9
Q ss_pred EEeeccCCCCcceeecCCC--CCcccccCchHHHHHHHHHHhhh
Q 001334 448 IFAYGQTGSGKTYTMSGPD--LTAEETWGVNYRALRDLFQISNT 489 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM~G~~--~~~~e~~GIipRal~~LF~~~~~ 489 (1097)
||..|+|.|||||--.--- ....---|-+-....++|+..+.
T Consensus 194 i~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 8999999999999753210 00011124455667788876543
No 292
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=25.86 E-value=5.9e+02 Score=29.84 Aligned_cols=18 Identities=33% Similarity=0.294 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 001334 213 TLLGKVVKDFSAVLVSQG 230 (1097)
Q Consensus 213 ~~l~~~~~~~~~~l~~~~ 230 (1097)
.-|.+-|+++.++.++..
T Consensus 153 ~nIEKSvKDLqRctvSL~ 170 (302)
T PF07139_consen 153 PNIEKSVKDLQRCTVSLT 170 (302)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 467778888888877664
No 293
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=25.82 E-value=34 Score=42.32 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=24.8
Q ss_pred eeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 415 LFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 415 ~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|+.+++.+. .- +.+...+..+....|+-||++|+|||+.-
T Consensus 63 ~f~~iiGqs~----~i---~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 63 SFDEIIGQEE----GI---KALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CHHHeeCcHH----HH---HHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 4666666432 22 22223344555566777999999998754
No 294
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=25.78 E-value=42 Score=38.64 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=20.1
Q ss_pred hcCCcceeEEeeccCCCCcceeec
Q 001334 440 VLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 440 vLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
--..-+..++-||+.|||||.||.
T Consensus 18 ~~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 18 DKSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred cccCCceEEEEECCCCCCHHHHHH
Confidence 345677889999999999999984
No 295
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=25.73 E-value=31 Score=44.43 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=19.6
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|..+++|.|+++. -+||||||.+.
T Consensus 44 ai~~il~G~nvvv~--apTGSGKTla~ 68 (742)
T TIGR03817 44 AAELAHAGRHVVVA--TGTASGKSLAY 68 (742)
T ss_pred HHHHHHCCCCEEEE--CCCCCcHHHHH
Confidence 45667899997665 48999999874
No 296
>PRK08118 topology modulation protein; Reviewed
Probab=25.72 E-value=29 Score=36.11 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=12.0
Q ss_pred EEeeccCCCCccee
Q 001334 448 IFAYGQTGSGKTYT 461 (1097)
Q Consensus 448 IfAYGQTGSGKTyT 461 (1097)
|+-.|+.|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999953
No 297
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=25.61 E-value=25 Score=31.60 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=12.2
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 345899999999766
No 298
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.56 E-value=44 Score=40.46 Aligned_cols=17 Identities=47% Similarity=0.727 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
..|+..|++|+|||+|.
T Consensus 224 ~vi~lvGptGvGKTTta 240 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSI 240 (432)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45777899999999997
No 299
>PTZ00110 helicase; Provisional
Probab=25.55 E-value=31 Score=42.63 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=18.7
Q ss_pred HhhhcCCcceeEEeeccCCCCcceee
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+..++.|.|+ ++.++||||||.+.
T Consensus 161 ip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 161 WPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHhcCCCE--EEEeCCCChHHHHH
Confidence 4567889876 45679999999864
No 300
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=25.55 E-value=31 Score=43.61 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=14.5
Q ss_pred EEeeccCCCCcceeecC
Q 001334 448 IFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM~G 464 (1097)
++-.|+.|+|||||+..
T Consensus 176 ~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 176 FLIHGPPGTGKTRTLVE 192 (637)
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 45799999999999853
No 301
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=25.51 E-value=28 Score=30.88 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=12.7
Q ss_pred EEeeccCCCCcceeec
Q 001334 448 IFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM~ 463 (1097)
|+-+|..|+|||++..
T Consensus 2 ~~~~g~~G~Gktt~~~ 17 (99)
T cd01983 2 IVVTGKGGVGKTTLAA 17 (99)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4567888999998864
No 302
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=25.45 E-value=33 Score=42.17 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=29.5
Q ss_pred EeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 414 FLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+.||.+++.+..=.++.+.+..+ ...+..|+-+|.+||||++.-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~-----a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVV-----ARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHH-----hCcCCCEEEECCCCccHHHHH
Confidence 56777877655445555443322 245677889999999998764
No 303
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=25.31 E-value=32 Score=40.09 Aligned_cols=15 Identities=47% Similarity=0.813 Sum_probs=12.6
Q ss_pred EeeccCCCCcceeec
Q 001334 449 FAYGQTGSGKTYTMS 463 (1097)
Q Consensus 449 fAYGQTGSGKTyTM~ 463 (1097)
..||+|||||++-+-
T Consensus 91 ~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 91 VVYGPTGSGKSQLLR 105 (369)
T ss_pred EEECCCCCCHHHHHH
Confidence 349999999998764
No 304
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=25.28 E-value=23 Score=41.74 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=29.3
Q ss_pred eeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 412 KMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 412 k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
..|.|+.|-|. +++- .-|+..+.+-.-+-|+-+|.+||||||++-
T Consensus 12 ~~~pf~~ivGq----~~~k---~al~~~~~~p~~~~vli~G~~GtGKs~~ar 56 (350)
T CHL00081 12 PVFPFTAIVGQ----EEMK---LALILNVIDPKIGGVMIMGDRGTGKSTTIR 56 (350)
T ss_pred CCCCHHHHhCh----HHHH---HHHHHhccCCCCCeEEEEcCCCCCHHHHHH
Confidence 46888888774 3332 233444444222457789999999999874
No 305
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.18 E-value=25 Score=40.59 Aligned_cols=18 Identities=39% Similarity=0.477 Sum_probs=15.0
Q ss_pred eeEEeeccCCCCcceeec
Q 001334 446 VCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM~ 463 (1097)
-+|+-.|.||||||++|.
T Consensus 144 ~siii~G~t~sGKTt~ln 161 (312)
T COG0630 144 KSIIICGGTASGKTTLLN 161 (312)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 346778999999999984
No 306
>PRK08233 hypothetical protein; Provisional
Probab=25.08 E-value=30 Score=35.26 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=12.1
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|+--|++|||||+..
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999765
No 307
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=25.06 E-value=3.5e+02 Score=25.61 Aligned_cols=45 Identities=16% Similarity=0.363 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 294 DHAELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYI 338 (1097)
Q Consensus 294 ~~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~ 338 (1097)
++..-+..+-.++..++..+-++-.....+...|++++.+|...+
T Consensus 29 e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 29 EYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 308
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=24.82 E-value=42 Score=36.34 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=20.4
Q ss_pred hhhHhhhcCCc---ceeEEeeccCCCCcceee
Q 001334 434 QPLVRSVLDGF---NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 434 ~PLV~svLdGy---NvcIfAYGQTGSGKTyTM 462 (1097)
-+-++.++.|- ..++.-+|.+|||||+-.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 34456666532 566777899999998764
No 309
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=24.78 E-value=31 Score=39.05 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=13.4
Q ss_pred eEEeeccCCCCcceeec
Q 001334 447 CIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM~ 463 (1097)
+|...|++|+|||.|..
T Consensus 74 vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIA 90 (272)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 44455999999999973
No 310
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=24.68 E-value=33 Score=40.09 Aligned_cols=29 Identities=34% Similarity=0.529 Sum_probs=21.1
Q ss_pred hhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 434 QPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 434 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
..++..++.+. ..|+-.|.||||||.+|-
T Consensus 168 ~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 168 ARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 45556666543 577789999999998773
No 311
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=24.66 E-value=44 Score=43.24 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=23.7
Q ss_pred hHHHHhhhhhhHhhhcCCc------ceeEEeeccCCCCcceee
Q 001334 426 QEQIYVDTQPLVRSVLDGF------NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 426 QeeVF~ev~PLV~svLdGy------NvcIfAYGQTGSGKTyTM 462 (1097)
|++.-..+...|.....|. .+.++-+|+||+|||++.
T Consensus 463 Q~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 463 QDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHH
Confidence 4444444444444443443 357889999999999886
No 312
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.54 E-value=5.6e+02 Score=27.04 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001334 298 LTDRHQKQLQELKLQYLETK 317 (1097)
Q Consensus 298 ~l~~~~~~l~~lk~~~~~~k 317 (1097)
-++........+..++..+.
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444
No 313
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=24.40 E-value=3.3e+02 Score=33.44 Aligned_cols=6 Identities=50% Similarity=1.365 Sum_probs=2.4
Q ss_pred cccccC
Q 001334 117 GVWRYG 122 (1097)
Q Consensus 117 g~w~~~ 122 (1097)
..|-|.
T Consensus 278 rVWDYA 283 (493)
T KOG0804|consen 278 RVWDYA 283 (493)
T ss_pred eeeecc
Confidence 334443
No 314
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=24.40 E-value=26 Score=45.90 Aligned_cols=18 Identities=39% Similarity=0.696 Sum_probs=15.5
Q ss_pred ceeEEeeccCCCCcceee
Q 001334 445 NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM 462 (1097)
|.-.+..|+||||||++|
T Consensus 475 n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 475 NAHLLILGPTGAGKSATL 492 (893)
T ss_pred cccEEEECCCCCCHHHHH
Confidence 566677899999999998
No 315
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=24.17 E-value=28 Score=36.74 Aligned_cols=15 Identities=47% Similarity=0.465 Sum_probs=12.5
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|.-.|.+|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556899999999874
No 316
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.88 E-value=30 Score=41.53 Aligned_cols=19 Identities=47% Similarity=0.478 Sum_probs=15.3
Q ss_pred eeEEeeccCCCCcceeecC
Q 001334 446 VCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM~G 464 (1097)
-.|.-.|++|+|||+|+..
T Consensus 207 ~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3466789999999999843
No 317
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=23.83 E-value=34 Score=42.07 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=31.7
Q ss_pred eeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 412 KMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 412 k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
..+.||.+++....-..+...+..+ ...+.-|+-+|.+||||++.-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~-----A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL-----AMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH-----hCCCCCEEEECCCCccHHHHH
Confidence 3578999988765545555544322 224667889999999998764
No 318
>PRK05580 primosome assembly protein PriA; Validated
Probab=23.81 E-value=37 Score=43.20 Aligned_cols=37 Identities=30% Similarity=0.297 Sum_probs=23.7
Q ss_pred eCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 420 FAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 420 F~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+.....|.++++.+. ... +++ .++.+|.||||||.+.
T Consensus 143 ~~Lt~~Q~~ai~~i~---~~~--~~~-~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 143 PTLNPEQAAAVEAIR---AAA--GFS-PFLLDGVTGSGKTEVY 179 (679)
T ss_pred CCCCHHHHHHHHHHH---hcc--CCC-cEEEECCCCChHHHHH
Confidence 345566776665531 111 333 4788999999999775
No 319
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=23.73 E-value=28 Score=36.61 Aligned_cols=15 Identities=47% Similarity=0.476 Sum_probs=12.6
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|.--|.+|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999887
No 320
>PRK06217 hypothetical protein; Validated
Probab=23.70 E-value=33 Score=35.82 Aligned_cols=14 Identities=43% Similarity=0.570 Sum_probs=12.1
Q ss_pred EEeeccCCCCccee
Q 001334 448 IFAYGQTGSGKTYT 461 (1097)
Q Consensus 448 IfAYGQTGSGKTyT 461 (1097)
|+-.|.+|||||+.
T Consensus 4 I~i~G~~GsGKSTl 17 (183)
T PRK06217 4 IHITGASGSGTTTL 17 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 77889999999865
No 321
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=23.70 E-value=30 Score=41.76 Aligned_cols=17 Identities=41% Similarity=0.366 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
..|.-.|++|+|||+|+
T Consensus 192 ~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 192 GVYALIGPTGVGKTTTT 208 (420)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35677899999999998
No 322
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.69 E-value=5.6e+02 Score=23.85 Aligned_cols=25 Identities=32% Similarity=0.139 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 296 AELTDRHQKQLQELKLQYLETKGEV 320 (1097)
Q Consensus 296 ~~~l~~~~~~l~~lk~~~~~~k~~~ 320 (1097)
-+.+..++.++.+|+....+++.+.
T Consensus 17 veti~~Lq~e~eeLke~n~~L~~e~ 41 (72)
T PF06005_consen 17 VETIALLQMENEELKEKNNELKEEN 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3445555666666665555544333
No 323
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=23.52 E-value=5.8e+02 Score=26.44 Aligned_cols=49 Identities=29% Similarity=0.357 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhcCCCCEEEEEEe
Q 001334 327 WEEELYRLEHYIKN----LEVASSSYQKVLEENRVLYNQVQDLKGTIRVYCRV 375 (1097)
Q Consensus 327 ~~~~~~~l~~~~~~----l~~~~~~~~~~l~err~L~N~lqelKGnIRV~cRV 375 (1097)
++.+-..|+..++. |+.....|++.-.+||.+..++-...+...|.-|.
T Consensus 63 LEkeK~~Le~qlk~~e~rLeQEsKAyhk~ndeRr~ylaEi~~~s~~~~~~k~q 115 (129)
T PF15372_consen 63 LEKEKRSLENQLKDYEWRLEQESKAYHKANDERRQYLAEISQTSALHQVSKRQ 115 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhHhhhccc
Confidence 34444455555543 34456789999999999999998887766666554
No 324
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=23.40 E-value=7.4e+02 Score=30.73 Aligned_cols=28 Identities=29% Similarity=0.204 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 294 DHAELTDRHQKQLQELKLQYLETKGEVK 321 (1097)
Q Consensus 294 ~~~~~l~~~~~~l~~lk~~~~~~k~~~~ 321 (1097)
+++++|...|+.|++-+.+-..+..|++
T Consensus 394 nLqe~la~tqk~LqEsr~eKetLqlelk 421 (527)
T PF15066_consen 394 NLQEALANTQKHLQESRNEKETLQLELK 421 (527)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4555666666666655555544444444
No 325
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=23.11 E-value=37 Score=37.99 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=25.4
Q ss_pred eCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 420 FAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 420 F~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
|.++++|....+....+-+.. -....|+..|.||+|||.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~--~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 8 FFPDAAQTKALELEAKGKEEL--DFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred cCcHHHHHHHHHHHHHhhhhc--cCCeEEEEECCCCCcHHHHH
Confidence 345666666654433333322 33456777999999999886
No 326
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=23.11 E-value=4.7e+02 Score=33.46 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHhhhcccCCcchHHHHHHHHHHhhcccccccCccccccccchhhHHHhhhhccchh
Q 001334 215 LGKVVKDFSAVLVSQGTQLGLFLKKILKGEVGSLSKAEFMEAISQYLGRKTSLVSGDHSKFCVCGEKREVIQHSISRSCD 294 (1097)
Q Consensus 215 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 294 (1097)
|+.+..+-|.+|..+...+............-.-........+++-+.++..+......-. +..-...+.+++
T Consensus 113 Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq-------~~Fv~ltne~~e 185 (617)
T PF15070_consen 113 LSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQ-------DAFVKLTNENME 185 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHhhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001334 295 HAELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEH-------YIKNLEVASSSYQKVLEENRVLYNQV 362 (1097)
Q Consensus 295 ~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~-------~~~~l~~~~~~~~~~l~err~L~N~l 362 (1097)
+...|..-+.-.++|...+..+...+..+...+...-..+.. ++..|......|+.+..++-.||+++
T Consensus 186 lt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~ 260 (617)
T PF15070_consen 186 LTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQL 260 (617)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 327
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=23.07 E-value=27 Score=41.28 Aligned_cols=16 Identities=50% Similarity=0.721 Sum_probs=12.0
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
-++..|.||||||.+|
T Consensus 17 ~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 17 HILIIGATGSGKTQAI 32 (386)
T ss_dssp -EEEEE-TTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 3667899999999876
No 328
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=23.04 E-value=3.4e+02 Score=28.86 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 307 QELKLQYLETKGEVKEIQSNWEEELYRLEH 336 (1097)
Q Consensus 307 ~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~ 336 (1097)
..++.+...++.++..+...+.+++..+..
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 329
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=23.00 E-value=47 Score=42.61 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=22.7
Q ss_pred hHHHHhhhhhhHhhhcCCc------ceeEEeeccCCCCcceee
Q 001334 426 QEQIYVDTQPLVRSVLDGF------NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 426 QeeVF~ev~PLV~svLdGy------NvcIfAYGQTGSGKTyTM 462 (1097)
|++.-+.+...|....-|. .+.++-+|+||+|||++.
T Consensus 459 Q~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 459 QDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELA 501 (731)
T ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHH
Confidence 4444444433344333343 345778999999999876
No 330
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=22.95 E-value=50 Score=40.18 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=28.4
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhh
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNT 489 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~ 489 (1097)
++.-+=.++|.++ .|++|+||||.-.+-.....-..| -+-++..||..+..
T Consensus 202 l~~fve~~~Nli~--lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 202 LLPLVEPNYNLIE--LGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNIST 252 (449)
T ss_pred hHHHHhcCCcEEE--ECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHHHH
Confidence 3333447788765 699999999887541100001124 33345566665543
No 331
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=22.81 E-value=33 Score=41.93 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=20.0
Q ss_pred hhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 435 PLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 435 PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
-+.-.+..|.| ++.||+.|||||++..
T Consensus 190 AleiAAAGgHn--Ll~~GpPGtGKTmla~ 216 (490)
T COG0606 190 ALEIAAAGGHN--LLLVGPPGTGKTMLAS 216 (490)
T ss_pred HHHHHHhcCCc--EEEecCCCCchHHhhh
Confidence 34455566777 5779999999998763
No 332
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.72 E-value=4.7e+02 Score=33.30 Aligned_cols=31 Identities=10% Similarity=0.244 Sum_probs=16.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 291 RSCDHAELTDRHQKQLQELKLQYLETKGEVK 321 (1097)
Q Consensus 291 ~~~~~~~~l~~~~~~l~~lk~~~~~~k~~~~ 321 (1097)
++..+...+.+++..+..|+..+.+++.++.
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 437 ENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555544
No 333
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.68 E-value=6.7e+02 Score=28.91 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001334 299 TDRHQKQLQELKLQYLETKGEVKEIQSN---WEEELYRLEHYIKNLEVASSSYQKVLEENRVLYN 360 (1097)
Q Consensus 299 l~~~~~~l~~lk~~~~~~k~~~~~~~~~---~~~~~~~l~~~~~~l~~~~~~~~~~l~err~L~N 360 (1097)
+..++.++..+..++..+..++.+++.. .++++.+++..++.++.--.....-+.+|..+++
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 2345555555555554433334444555555543
No 334
>CHL00181 cbbX CbbX; Provisional
Probab=22.67 E-value=35 Score=38.83 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=12.7
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 455999999999875
No 335
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=22.59 E-value=36 Score=34.32 Aligned_cols=16 Identities=44% Similarity=0.480 Sum_probs=13.3
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999998765
No 336
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=22.38 E-value=4.4e+02 Score=29.07 Aligned_cols=48 Identities=31% Similarity=0.267 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 293 CDHAELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKN 340 (1097)
Q Consensus 293 ~~~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~ 340 (1097)
..+...+..++.+|..++.++.++-.+.+..|.....++..|+..-+.
T Consensus 139 ~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~ 186 (221)
T PF05700_consen 139 EQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKE 186 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456677888899999999999999999888888888888888876544
No 337
>PRK14531 adenylate kinase; Provisional
Probab=22.37 E-value=38 Score=35.49 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=12.9
Q ss_pred eEEeeccCCCCccee
Q 001334 447 CIFAYGQTGSGKTYT 461 (1097)
Q Consensus 447 cIfAYGQTGSGKTyT 461 (1097)
-|+.+|..|||||+.
T Consensus 4 ~i~i~G~pGsGKsT~ 18 (183)
T PRK14531 4 RLLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999876
No 338
>PRK11519 tyrosine kinase; Provisional
Probab=22.37 E-value=1.8e+03 Score=28.66 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=13.5
Q ss_pred CcceeEEeeccCCCCcceeec
Q 001334 443 GFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 443 GyNvcIfAYGQTGSGKTyTM~ 463 (1097)
+.++.+++-...|.|||++-.
T Consensus 525 ~~kvi~vts~~~geGKTt~a~ 545 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCA 545 (719)
T ss_pred CceEEEEECCCCCCCHHHHHH
Confidence 344555555567999998753
No 339
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=22.33 E-value=33 Score=38.91 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=12.8
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|+-||++|+|||+.-
T Consensus 61 vll~G~pGTGKT~lA 75 (284)
T TIGR02880 61 MSFTGNPGTGKTTVA 75 (284)
T ss_pred EEEEcCCCCCHHHHH
Confidence 566999999999875
No 340
>PRK01172 ski2-like helicase; Provisional
Probab=22.17 E-value=45 Score=42.12 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=16.7
Q ss_pred hhhcCCcceeEEeeccCCCCccee
Q 001334 438 RSVLDGFNVCIFAYGQTGSGKTYT 461 (1097)
Q Consensus 438 ~svLdGyNvcIfAYGQTGSGKTyT 461 (1097)
..+++|.| ++..++||||||..
T Consensus 32 ~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 32 EQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHhcCCc--EEEECCCCchHHHH
Confidence 34567877 46678999999985
No 341
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=22.17 E-value=47 Score=40.23 Aligned_cols=20 Identities=45% Similarity=0.497 Sum_probs=16.9
Q ss_pred CcceeEEeeccCCCCcceee
Q 001334 443 GFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 443 GyNvcIfAYGQTGSGKTyTM 462 (1097)
|....|+-.|.+|+|||+|.
T Consensus 98 ~~~~vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTC 117 (429)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 33567889999999999997
No 342
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.06 E-value=49 Score=39.65 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=19.9
Q ss_pred hhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 435 PLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 435 PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
..|..++.|..+.. ..|||||||-+.
T Consensus 90 ~aiP~~L~g~dvIg--lAeTGSGKT~af 115 (476)
T KOG0330|consen 90 EAIPVALGGRDVIG--LAETGSGKTGAF 115 (476)
T ss_pred hhcchhhCCCcEEE--EeccCCCchhhh
Confidence 34566889988755 459999999775
No 343
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.05 E-value=6.6e+02 Score=23.56 Aligned_cols=51 Identities=22% Similarity=0.198 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 297 ELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQKV 351 (1097)
Q Consensus 297 ~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 351 (1097)
+.+.-+|.++.+||...+.+.+++.+++. ....|++.-..+......|+.-
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~----~reaL~~eneqlk~e~~~WQer 68 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQH----QREALERENEQLKEEQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788999999988888888876653 2333444444444444555533
No 344
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.02 E-value=7.2e+02 Score=29.03 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=4.0
Q ss_pred CCcceeecCC
Q 001334 456 SGKTYTMSGP 465 (1097)
Q Consensus 456 SGKTyTM~G~ 465 (1097)
.+.+|.++|+
T Consensus 215 ~~~~~~ly~~ 224 (314)
T PF04111_consen 215 DKTTYPLYSS 224 (314)
T ss_dssp TCEEEESS--
T ss_pred CCeEEecccC
Confidence 3455555553
No 345
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=21.96 E-value=48 Score=39.31 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.5
Q ss_pred CCcceeEEeeccCCCCccee
Q 001334 442 DGFNVCIFAYGQTGSGKTYT 461 (1097)
Q Consensus 442 dGyNvcIfAYGQTGSGKTyT 461 (1097)
.|+.-+|+..|+.|+|||.-
T Consensus 20 ~Gi~f~im~~G~sG~GKttf 39 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTF 39 (373)
T ss_pred cCCceEEEEecCCCCchhHH
Confidence 59999999999999999974
No 346
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=21.87 E-value=41 Score=34.47 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=12.8
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
++-+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567999999999855
No 347
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=21.80 E-value=36 Score=33.63 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.1
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.+.-.|++|||||.++
T Consensus 17 ~v~I~GpSGsGKSTLl 32 (107)
T cd00820 17 GVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3456899999999876
No 348
>CHL00176 ftsH cell division protein; Validated
Probab=21.76 E-value=43 Score=42.51 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=27.2
Q ss_pred eEeeceeeCCCCChHHHHhhhhhhHhhhcCC---------cceeEEeeccCCCCcceee
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPLVRSVLDG---------FNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PLV~svLdG---------yNvcIfAYGQTGSGKTyTM 462 (1097)
.+.||.|.+-+...+++ ..++..+-+. ...-|+-||++|+|||+..
T Consensus 179 ~~~f~dv~G~~~~k~~l----~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 179 GITFRDIAGIEEAKEEF----EEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCCHHhccChHHHHHHH----HHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 36788877754433333 3333222111 1234788999999999886
No 349
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=21.76 E-value=56 Score=37.30 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=22.1
Q ss_pred ChHHHHhhhhhhHhhhcCCc-ceeEEeeccCCCCcceee
Q 001334 425 SQEQIYVDTQPLVRSVLDGF-NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 425 tQeeVF~ev~PLV~svLdGy-NvcIfAYGQTGSGKTyTM 462 (1097)
.|+.+.+.....+ -.|. .-+++-||+.|+|||.+.
T Consensus 18 g~~~~~~~l~~~~---~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 18 GQEHIVQTLKNAI---KNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CcHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHH
Confidence 3555554433333 3443 346788999999999776
No 350
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=21.75 E-value=33 Score=32.64 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=12.9
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|.-+|.+|||||..|
T Consensus 4 i~~~G~~~~GKstl~ 18 (161)
T TIGR00231 4 IVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999876
No 351
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=21.62 E-value=26 Score=38.26 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=10.9
Q ss_pred eccCCCCcceee
Q 001334 451 YGQTGSGKTYTM 462 (1097)
Q Consensus 451 YGQTGSGKTyTM 462 (1097)
-|.+|||||+++
T Consensus 5 ~G~sGSGKTTla 16 (220)
T cd02025 5 AGSVAVGKSTTA 16 (220)
T ss_pred eCCCCCCHHHHH
Confidence 499999999987
No 352
>PRK14532 adenylate kinase; Provisional
Probab=21.53 E-value=42 Score=34.90 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=12.9
Q ss_pred eEEeeccCCCCccee
Q 001334 447 CIFAYGQTGSGKTYT 461 (1097)
Q Consensus 447 cIfAYGQTGSGKTyT 461 (1097)
.|+-.|..|||||+.
T Consensus 2 ~i~~~G~pGsGKsT~ 16 (188)
T PRK14532 2 NLILFGPPAAGKGTQ 16 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999865
No 353
>PHA01747 putative ATP-dependent protease
Probab=21.47 E-value=44 Score=39.91 Aligned_cols=31 Identities=32% Similarity=0.385 Sum_probs=27.1
Q ss_pred hhhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 433 TQPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 433 v~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
.-|+|++-..+-|.-++=.|+-|+||||+..
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f~ 208 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTFV 208 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHHH
Confidence 5788987778889999999999999999863
No 354
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=21.37 E-value=43 Score=34.36 Aligned_cols=16 Identities=44% Similarity=0.592 Sum_probs=13.4
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|+..|..|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667999999999875
No 355
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=21.26 E-value=29 Score=44.36 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=15.3
Q ss_pred ceeEEeeccCCCCcceee
Q 001334 445 NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM 462 (1097)
|.-++-.|.||||||++|
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 555677899999999998
No 356
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=21.16 E-value=55 Score=34.87 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=19.7
Q ss_pred hhHhhhcC-Ccc--eeEEeeccCCCCcceee
Q 001334 435 PLVRSVLD-GFN--VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 435 PLV~svLd-GyN--vcIfAYGQTGSGKTyTM 462 (1097)
+-++.++. |+. ..+.-+|.+|||||...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 34566665 433 34778999999999875
No 357
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=21.14 E-value=61 Score=34.80 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=20.7
Q ss_pred hhhHhhhcCCc---ceeEEeeccCCCCcceee
Q 001334 434 QPLVRSVLDGF---NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 434 ~PLV~svLdGy---NvcIfAYGQTGSGKTyTM 462 (1097)
-+-++.++.|- ...+.-||.+|||||...
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 34466677533 446788999999998775
No 358
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=21.04 E-value=39 Score=42.37 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=14.0
Q ss_pred eEEeeccCCCCcceeec
Q 001334 447 CIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM~ 463 (1097)
..+-.|+.|+|||||+.
T Consensus 203 l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 203 LLIIHGPPGTGKTRTLV 219 (649)
T ss_pred ceEeeCCCCCCceeeHH
Confidence 34458999999999984
No 359
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=21.00 E-value=61 Score=38.84 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=15.4
Q ss_pred eeEEeeccCCCCcceeec
Q 001334 446 VCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM~ 463 (1097)
.-++.+|.||||||.++.
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 557889999999999874
No 360
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.96 E-value=97 Score=27.29 Aligned_cols=26 Identities=50% Similarity=0.636 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 710 IRELREEISNLKQTLEKKEAELEQLR 735 (1097)
Q Consensus 710 i~eLreEI~~LK~~L~~~e~eleqlr 735 (1097)
.-+++.++.++++++++++.|++++|
T Consensus 43 ~~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 43 RLRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35677888888888888888888764
No 361
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=20.86 E-value=1e+02 Score=32.45 Aligned_cols=81 Identities=15% Similarity=0.232 Sum_probs=47.3
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHH-HHHHHhcCCCceecCcccc-
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNF-LVAVKDMQLLTFEASDLEK- 90 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nF-L~ac~~lg~~lFet~DL~e- 90 (1097)
.+...++..+.||++++.++.+..|..|....-.+. .+.-..+.|-..| .+.++.+|++ |...+++.
T Consensus 12 ~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~----------~s~~~Kl~NW~~Ln~kvl~kl~~~-l~~~~i~~i 80 (158)
T PF06294_consen 12 RPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNYSNG----------NSVAQKLNNWETLNEKVLKKLGIK-LDKEDIEGI 80 (158)
T ss_dssp --SS-HHHHHTTSHHHHHHHHHH-TTT---SS--------------SSHHHHHHHHHHHHHHTTGGGT-----HHHHHHH
T ss_pred CCCCchHHHcccccHHHHHHHHHCCCCccccccCCC----------CCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHH
Confidence 445578889999999999999999998842222221 1234577888888 7778888864 55555543
Q ss_pred ----cCChhhHHHHHHHH
Q 001334 91 ----GGSSSKVVDCILCL 104 (1097)
Q Consensus 91 ----~kn~~kVv~cLlaL 104 (1097)
.+-...++.+|...
T Consensus 81 ~~~~~Gaae~lL~~L~~~ 98 (158)
T PF06294_consen 81 INCKPGAAESLLYQLYTK 98 (158)
T ss_dssp HTT-TTTTHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHH
Confidence 24445666666554
No 362
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=20.72 E-value=61 Score=42.53 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
++++-+|+||+|||++.
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788999999999875
No 363
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=20.65 E-value=60 Score=40.92 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=24.9
Q ss_pred eCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 420 FAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 420 F~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
|.+...|..+..++ +...-.....-++..|+||||||...
T Consensus 234 f~lt~~Q~~ai~~I---~~~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 234 FKLTRAQKRVVKEI---LQDLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCCHHHHHHHHHH---HHHhccCCCccEEEECCCCCcHHHHH
Confidence 44566677776553 22222233334688999999999865
No 364
>PRK04040 adenylate kinase; Provisional
Probab=20.62 E-value=42 Score=35.76 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=13.9
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|+-+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4778999999999876
No 365
>PRK06762 hypothetical protein; Provisional
Probab=20.60 E-value=45 Score=33.94 Aligned_cols=15 Identities=47% Similarity=0.629 Sum_probs=12.2
Q ss_pred eEEeeccCCCCccee
Q 001334 447 CIFAYGQTGSGKTYT 461 (1097)
Q Consensus 447 cIfAYGQTGSGKTyT 461 (1097)
+|.-.|..|||||+.
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 466689999999874
No 366
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=20.59 E-value=45 Score=31.43 Aligned_cols=15 Identities=40% Similarity=0.676 Sum_probs=12.9
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 677899999999765
No 367
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=20.46 E-value=54 Score=41.38 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=20.7
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
++..+..++...++-||++|+|||+..
T Consensus 166 l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 166 LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 344455667777888999999999876
No 368
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.46 E-value=4.9e+02 Score=30.92 Aligned_cols=32 Identities=22% Similarity=0.152 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 295 HAELTDRHQKQLQELKLQYLETKGEVKEIQSN 326 (1097)
Q Consensus 295 ~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~ 326 (1097)
+..++..+.++-+.|+..+.++++++.+..++
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeee 163 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDALQQECGEKEEE 163 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHH
Confidence 34455555555555555666666665554433
No 369
>PRK00300 gmk guanylate kinase; Provisional
Probab=20.41 E-value=39 Score=35.57 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=13.5
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
..|.-.|++|||||..+
T Consensus 6 ~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35677899999999654
No 370
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.13 E-value=6.4e+02 Score=33.64 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001334 299 TDRHQKQLQELKLQYLETKGEV 320 (1097)
Q Consensus 299 l~~~~~~l~~lk~~~~~~k~~~ 320 (1097)
+..+++.+.+|..+++=+|.++
T Consensus 334 ve~lkEr~deletdlEILKaEm 355 (1243)
T KOG0971|consen 334 VEALKERVDELETDLEILKAEM 355 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 371
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=20.08 E-value=63 Score=38.83 Aligned_cols=79 Identities=13% Similarity=0.231 Sum_probs=46.1
Q ss_pred ceeEeeceeeCCCCChHHHHhh-hhhhHhhhcC--C--cceeEEeeccCCCCcceee------cCCCC-------Ccccc
Q 001334 411 RKMFLFNKVFAPNVSQEQIYVD-TQPLVRSVLD--G--FNVCIFAYGQTGSGKTYTM------SGPDL-------TAEET 472 (1097)
Q Consensus 411 ~k~F~FD~VF~~~atQeeVF~e-v~PLV~svLd--G--yNvcIfAYGQTGSGKTyTM------~G~~~-------~~~e~ 472 (1097)
.+.+.||.+.+.-.--..+.+. +..+....+. | .---|.-||+.|+|||+.. +|-.. -....
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 3457788887655444444444 3556666553 2 2233667999999999873 23110 01123
Q ss_pred cCchHHHHHHHHHHhhh
Q 001334 473 WGVNYRALRDLFQISNT 489 (1097)
Q Consensus 473 ~GIipRal~~LF~~~~~ 489 (1097)
.|=--+.++++|.....
T Consensus 189 vGEsEk~IR~~F~~A~~ 205 (413)
T PLN00020 189 AGEPGKLIRQRYREAAD 205 (413)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 45566888888886653
No 372
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=20.05 E-value=7.1e+02 Score=33.22 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=8.5
Q ss_pred EeeCCHHHHHHHH
Q 001334 542 IPVTSTEDVIELM 554 (1097)
Q Consensus 542 v~V~S~eev~~LL 554 (1097)
+.|.+.+++..+.
T Consensus 624 ~v~~~l~~a~~~~ 636 (1164)
T TIGR02169 624 LVVEDIEAARRLM 636 (1164)
T ss_pred EEEcCHHHHHHHh
Confidence 3577777776664
No 373
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=20.05 E-value=9.5e+02 Score=24.58 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 303 QKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIK 339 (1097)
Q Consensus 303 ~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~ 339 (1097)
+..++..+.++..++..+......+..++++.+.++.
T Consensus 107 ~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~ 143 (151)
T PF11559_consen 107 EAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIE 143 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444433
Done!