Query 001334
Match_columns 1097
No_of_seqs 610 out of 2805
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 22:48:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4etp_A Kinesin-like protein KA 100.0 1.1E-92 3.7E-97 809.7 38.9 348 345-700 37-401 (403)
2 3u06_A Protein claret segregat 100.0 1.3E-91 4.4E-96 802.1 36.8 382 301-705 7-391 (412)
3 3cob_A Kinesin heavy chain-lik 100.0 4E-90 1.4E-94 780.1 31.0 353 363-724 1-354 (369)
4 2rep_A Kinesin-like protein KI 100.0 2.9E-89 1E-93 774.7 32.3 342 355-696 10-376 (376)
5 3t0q_A AGR253WP; kinesin, alph 100.0 1.3E-88 4.5E-93 763.5 32.8 329 364-700 2-348 (349)
6 2h58_A Kinesin-like protein KI 100.0 5E-87 1.7E-91 745.6 35.3 326 364-698 1-330 (330)
7 1f9v_A Kinesin-like protein KA 100.0 1.7E-87 5.8E-92 753.9 31.5 328 365-700 1-345 (347)
8 2vvg_A Kinesin-2; motor protei 100.0 7.1E-87 2.4E-91 749.3 30.9 332 366-705 3-344 (350)
9 3b6u_A Kinesin-like protein KI 100.0 3.6E-87 1.2E-91 756.4 27.6 342 360-705 14-362 (372)
10 2y65_A Kinesin, kinesin heavy 100.0 7.9E-87 2.7E-91 752.5 28.7 330 364-706 8-343 (365)
11 3lre_A Kinesin-like protein KI 100.0 1E-86 3.4E-91 749.6 28.7 329 358-696 1-355 (355)
12 1x88_A Kinesin-like protein KI 100.0 6E-87 2E-91 752.4 25.0 340 363-704 4-358 (359)
13 1goj_A Kinesin, kinesin heavy 100.0 7E-86 2.4E-90 742.6 29.2 332 365-705 4-339 (355)
14 3bfn_A Kinesin-like protein KI 100.0 6.6E-86 2.3E-90 748.9 28.2 337 359-705 13-356 (388)
15 1bg2_A Kinesin; motor protein, 100.0 2.5E-86 8.4E-91 738.7 23.2 319 364-696 4-325 (325)
16 1t5c_A CENP-E protein, centrom 100.0 2.5E-85 8.5E-90 736.7 30.1 327 366-707 3-339 (349)
17 2owm_A Nckin3-434, related to 100.0 1.9E-85 6.6E-90 757.0 29.7 337 361-704 32-421 (443)
18 2zfi_A Kinesin-like protein KI 100.0 2.9E-85 9.9E-90 740.4 29.6 330 366-702 3-360 (366)
19 4a14_A Kinesin, kinesin-like p 100.0 1.7E-84 5.8E-89 729.0 28.7 319 366-694 10-344 (344)
20 3nwn_A Kinesin-like protein KI 100.0 1.1E-84 3.9E-89 733.5 27.4 325 364-696 21-359 (359)
21 1v8k_A Kinesin-like protein KI 100.0 5.8E-85 2E-89 745.3 24.4 345 345-700 50-406 (410)
22 2wbe_C Bipolar kinesin KRP-130 100.0 7.2E-85 2.5E-89 738.6 24.3 338 362-705 18-370 (373)
23 2heh_A KIF2C protein; kinesin, 100.0 7.8E-85 2.7E-89 739.9 22.7 343 346-699 31-385 (387)
24 3gbj_A KIF13B protein; kinesin 100.0 4.3E-84 1.5E-88 728.0 27.2 323 367-695 1-349 (354)
25 2nr8_A Kinesin-like protein KI 100.0 5.6E-84 1.9E-88 727.7 28.0 328 361-696 17-358 (358)
26 1ry6_A Internal kinesin; kines 100.0 8.1E-83 2.8E-87 718.7 27.3 328 368-703 1-338 (360)
27 3dc4_A Kinesin-like protein NO 100.0 8.9E-82 3E-86 706.5 26.9 315 364-701 19-340 (344)
28 4h1g_A Maltose binding protein 100.0 2.6E-79 8.9E-84 743.1 32.4 334 358-698 365-713 (715)
29 2o0a_A S.cerevisiae chromosome 100.0 2.7E-33 9.2E-38 302.9 9.9 278 347-699 4-292 (298)
30 3kin_B Kinesin heavy chain; mo 99.9 4.2E-27 1.4E-31 227.4 10.7 110 626-735 1-116 (117)
31 2kin_B Kinesin; motor protein, 99.9 1.1E-27 3.7E-32 225.4 4.6 84 623-706 2-86 (100)
32 1ujo_A Transgelin; CH domain, 99.9 3E-23 1E-27 207.1 6.6 101 1-113 18-126 (144)
33 1wyr_A RHO guanine nucleotide 99.9 3.3E-23 1.1E-27 201.2 6.4 88 13-111 30-117 (121)
34 1wym_A Transgelin-2; CH domain 99.9 7.4E-23 2.5E-27 206.5 7.2 101 1-113 26-133 (155)
35 2l3g_A RHO guanine nucleotide 99.9 1.2E-22 3.9E-27 198.7 7.8 88 13-111 35-124 (126)
36 1p2x_A RNG2 protein, RAS GTPas 99.9 7.5E-23 2.6E-27 207.3 5.7 97 1-111 20-119 (159)
37 1h67_A Calponin alpha; cytoske 99.9 8.5E-23 2.9E-27 194.5 3.2 94 1-111 12-108 (108)
38 1wyp_A Calponin 1; CH domain, 99.8 2.8E-22 9.7E-27 198.3 4.3 95 1-112 26-123 (136)
39 1p5s_A RAS GTPase-activating-l 99.8 8E-22 2.7E-26 206.9 5.4 97 1-111 64-163 (203)
40 2rr8_A Iqgap1 protein; F-actin 99.8 8.7E-22 3E-26 204.8 5.4 104 1-111 34-142 (190)
41 3i6x_A P195, RAS GTPase-activa 99.8 1.2E-21 4.1E-26 204.1 4.4 104 1-111 56-164 (193)
42 1wyn_A Calponin-2; CH domain, 99.8 2.1E-21 7.1E-26 194.2 4.7 94 1-111 26-122 (146)
43 3ky9_A Proto-oncogene VAV; cal 99.7 1.3E-17 4.5E-22 198.6 8.1 97 11-117 29-131 (587)
44 2yrn_A Neuron navigator 2 isof 99.0 9.2E-11 3.2E-15 114.7 2.2 85 14-110 39-125 (129)
45 1pxy_A Fimbrin-like protein; c 98.6 1.4E-08 4.6E-13 119.6 4.2 76 9-94 30-109 (506)
46 1aoa_A T-fimbrin; actin-bindin 98.4 8.8E-08 3E-12 104.5 4.7 86 9-105 47-135 (275)
47 2qjz_A Microtubule-associated 98.4 1.3E-07 4.5E-12 92.2 5.1 94 2-114 15-111 (123)
48 1wyo_A Protein EB3, microtubul 98.4 1.8E-07 6.2E-12 94.7 5.0 83 20-114 43-128 (159)
49 1rt8_A Fimbrin; filamentous ac 98.2 3.3E-07 1.1E-11 108.1 3.4 79 9-93 35-117 (513)
50 4etp_B Spindle POLE BODY-assoc 98.2 2E-05 6.7E-10 87.1 16.9 290 302-678 8-310 (333)
51 1wku_A Alpha-actinin 3; calpon 98.1 9.1E-07 3.1E-11 95.7 3.2 83 13-108 45-129 (254)
52 2wa7_A Filamin-B; disease muta 98.0 1.6E-06 5.3E-11 93.3 1.5 84 13-108 38-124 (245)
53 1dxx_A Dystrophin; structural 97.8 9.6E-06 3.3E-10 87.2 3.2 66 14-92 36-103 (246)
54 1sh5_A Plectin 1, PLTN, PCN; a 97.7 9.4E-06 3.2E-10 87.0 2.9 84 12-109 34-119 (245)
55 3f7p_A Plectin-1; plakin, hemi 97.7 1.7E-05 5.8E-10 87.8 3.5 84 13-110 91-176 (296)
56 1rt8_A Fimbrin; filamentous ac 97.6 5.1E-05 1.8E-09 89.6 6.2 91 12-109 300-394 (513)
57 3hoc_A Filamin-A; calponin hom 97.4 7E-05 2.4E-09 82.0 3.5 85 13-109 65-152 (272)
58 2vzc_A Alpha-parvin; membrane, 96.9 0.00023 7.8E-09 70.0 1.8 68 14-92 41-112 (131)
59 1sjj_A Actinin; 3-helix bundle 96.9 0.0003 1E-08 87.0 2.8 80 14-106 27-108 (863)
60 1pxy_A Fimbrin-like protein; c 96.4 0.0017 5.7E-08 76.6 4.5 87 12-108 291-380 (506)
61 1wjo_A T-plastin; CH domain, a 96.3 0.0017 5.9E-08 63.4 3.0 67 15-91 29-98 (124)
62 4b7l_A Filamin-B; structural p 95.8 0.0041 1.4E-07 70.2 3.6 85 13-109 35-122 (347)
63 2d89_A EHBP1 protein; all alph 94.8 0.015 5.1E-07 56.2 3.3 86 13-112 28-116 (119)
64 1wyl_A NEDD9 interacting prote 94.2 0.022 7.4E-07 54.8 2.9 81 14-108 27-109 (116)
65 3ec2_A DNA replication protein 93.4 0.016 5.4E-07 57.7 0.3 51 413-463 6-56 (180)
66 2d87_A Smoothelin splice isofo 92.1 0.06 2E-06 52.7 2.4 85 13-111 26-114 (128)
67 2d88_A Protein mical-3; all al 91.9 0.1 3.4E-06 50.6 3.7 82 13-108 28-113 (121)
68 2w58_A DNAI, primosome compone 91.7 0.041 1.4E-06 55.5 0.7 50 413-462 21-71 (202)
69 1wyq_A Spectrin beta chain, br 90.3 0.18 6.2E-06 49.2 3.8 82 14-109 27-111 (127)
70 1wku_A Alpha-actinin 3; calpon 90.2 0.14 4.9E-06 55.2 3.3 82 14-109 160-245 (254)
71 1bkr_A Spectrin beta chain; fi 89.9 0.14 4.7E-06 48.7 2.5 79 13-105 22-103 (109)
72 2r8u_A Microtubule-associated 89.7 0.58 2E-05 51.1 7.5 91 12-114 14-121 (268)
73 4b4t_K 26S protease regulatory 88.7 3 0.0001 48.3 13.0 78 414-492 169-266 (428)
74 1sh5_A Plectin 1, PLTN, PCN; a 88.6 0.22 7.7E-06 53.1 3.3 78 14-105 153-233 (245)
75 1bhd_A Utrophin; calponin homo 88.6 0.17 5.9E-06 48.7 2.2 79 14-106 28-109 (118)
76 2qgz_A Helicase loader, putati 88.6 0.11 3.7E-06 57.2 0.9 50 414-463 121-170 (308)
77 2wa7_A Filamin-B; disease muta 87.1 0.28 9.7E-06 52.5 3.0 75 14-101 160-236 (245)
78 4b4t_M 26S protease regulatory 85.4 3.7 0.00013 47.7 11.2 78 414-492 178-275 (434)
79 4gkp_A Spindle POLE BODY-assoc 84.9 3.4 0.00011 45.4 9.9 262 358-699 4-272 (275)
80 1aoa_A T-fimbrin; actin-bindin 84.1 0.41 1.4E-05 52.0 2.4 75 15-101 189-269 (275)
81 1dxx_A Dystrophin; structural 84.0 0.33 1.1E-05 52.0 1.6 81 13-106 154-237 (246)
82 3hoc_A Filamin-A; calponin hom 81.8 0.6 2E-05 51.1 2.6 64 15-91 188-253 (272)
83 4b7l_A Filamin-B; structural p 81.5 0.68 2.3E-05 52.2 3.0 75 14-101 157-233 (347)
84 4b4t_J 26S protease regulatory 81.0 11 0.00039 43.3 12.9 78 414-492 145-242 (405)
85 3f7p_A Plectin-1; plakin, hemi 79.7 0.7 2.4E-05 51.2 2.2 77 14-104 209-288 (296)
86 2bjv_A PSP operon transcriptio 79.5 0.5 1.7E-05 49.7 1.0 44 414-462 3-46 (265)
87 3bos_A Putative DNA replicatio 78.3 0.62 2.1E-05 47.1 1.2 45 414-462 25-69 (242)
88 4b4t_L 26S protease subunit RP 77.7 10 0.00035 44.0 11.2 78 414-492 178-275 (437)
89 1l8q_A Chromosomal replication 76.0 0.92 3.2E-05 49.2 1.8 49 413-463 7-55 (324)
90 1jbk_A CLPB protein; beta barr 75.9 0.87 3E-05 43.8 1.4 27 436-462 34-60 (195)
91 1sjj_A Actinin; 3-helix bundle 74.4 0.85 2.9E-05 56.4 1.2 77 14-104 141-221 (863)
92 2v1u_A Cell division control p 73.6 0.99 3.4E-05 49.1 1.3 40 423-462 21-61 (387)
93 1d2n_A N-ethylmaleimide-sensit 73.6 0.9 3.1E-05 48.0 0.9 46 417-462 33-81 (272)
94 2kjq_A DNAA-related protein; s 73.6 1.2 4E-05 43.8 1.7 17 447-463 38-54 (149)
95 4dzn_A Coiled-coil peptide CC- 72.8 4.9 0.00017 29.7 4.3 30 708-737 2-31 (33)
96 4abo_I MAL3, microtubule integ 72.1 6.2 0.00021 39.5 6.4 82 20-114 27-111 (145)
97 2p65_A Hypothetical protein PF 72.1 0.98 3.3E-05 43.6 0.7 27 436-462 34-60 (187)
98 2r62_A Cell division protease 72.0 0.99 3.4E-05 47.3 0.8 50 413-462 7-61 (268)
99 1qde_A EIF4A, translation init 70.2 1.3 4.4E-05 45.0 1.1 24 436-461 44-67 (224)
100 3uk6_A RUVB-like 2; hexameric 69.9 1.4 4.8E-05 48.3 1.4 47 413-463 40-88 (368)
101 1vec_A ATP-dependent RNA helic 69.4 1.4 4.8E-05 44.0 1.2 25 436-462 33-57 (206)
102 2z4s_A Chromosomal replication 69.0 1.6 5.5E-05 50.2 1.7 49 412-463 100-148 (440)
103 2gxq_A Heat resistant RNA depe 68.4 1.5 5.2E-05 43.7 1.2 24 436-461 31-54 (207)
104 3t15_A Ribulose bisphosphate c 67.5 2.2 7.5E-05 46.2 2.3 29 434-462 21-53 (293)
105 1ixz_A ATP-dependent metallopr 66.8 1.3 4.3E-05 46.3 0.2 15 448-462 52-66 (254)
106 1g8p_A Magnesium-chelatase 38 66.6 1.6 5.3E-05 47.3 0.9 44 412-462 19-62 (350)
107 3dkp_A Probable ATP-dependent 65.6 1.8 6.3E-05 44.7 1.2 25 436-462 59-83 (245)
108 3bor_A Human initiation factor 64.8 1.2 4.1E-05 46.1 -0.4 26 435-462 59-84 (237)
109 2qz4_A Paraplegin; AAA+, SPG7, 64.4 2.6 9E-05 43.5 2.1 19 444-462 38-56 (262)
110 2c9o_A RUVB-like 1; hexameric 64.1 2.3 7.7E-05 49.0 1.7 46 413-462 33-80 (456)
111 3syl_A Protein CBBX; photosynt 63.8 2.6 8.8E-05 45.0 1.9 19 444-462 66-84 (309)
112 1fnn_A CDC6P, cell division co 63.7 1.9 6.4E-05 47.2 0.8 38 425-462 21-61 (389)
113 2chg_A Replication factor C sm 63.0 2.4 8.2E-05 41.7 1.4 34 426-462 22-55 (226)
114 2pl3_A Probable ATP-dependent 62.8 2.2 7.6E-05 43.7 1.2 25 436-462 55-79 (236)
115 3iuy_A Probable ATP-dependent 62.3 2.2 7.7E-05 43.5 1.1 25 436-462 50-74 (228)
116 3te6_A Regulatory protein SIR3 62.2 1.8 6.3E-05 48.2 0.5 22 441-462 41-62 (318)
117 2qby_A CDC6 homolog 1, cell di 61.8 2.4 8.2E-05 46.0 1.3 37 426-462 25-62 (386)
118 1t6n_A Probable ATP-dependent 60.6 2.6 8.9E-05 42.7 1.2 25 436-462 44-68 (220)
119 3cf0_A Transitional endoplasmi 60.5 1.9 6.4E-05 46.7 0.2 49 414-462 12-66 (301)
120 1t3j_A Mitofusin 1; coiled coi 60.1 20 0.00068 33.6 6.9 45 307-351 32-76 (96)
121 3llm_A ATP-dependent RNA helic 59.8 2 7E-05 44.5 0.2 26 435-462 68-93 (235)
122 1wrb_A DJVLGB; RNA helicase, D 59.6 2.7 9.2E-05 43.7 1.1 25 436-462 53-77 (253)
123 3b6e_A Interferon-induced heli 59.6 1.3 4.5E-05 44.1 -1.2 25 437-463 42-66 (216)
124 3ly5_A ATP-dependent RNA helic 59.2 2 6.7E-05 45.5 0.0 25 436-462 84-108 (262)
125 1sxj_C Activator 1 40 kDa subu 59.2 2.9 9.8E-05 45.8 1.3 41 415-462 23-63 (340)
126 3fmo_B ATP-dependent RNA helic 59.2 2.9 9.9E-05 45.4 1.3 27 436-462 122-148 (300)
127 4b4t_I 26S protease regulatory 58.3 46 0.0016 38.8 11.1 78 414-492 179-276 (437)
128 1iy2_A ATP-dependent metallopr 58.1 2.2 7.5E-05 45.3 0.2 15 448-462 76-90 (278)
129 3co5_A Putative two-component 57.6 3.6 0.00012 39.5 1.6 18 446-463 28-45 (143)
130 1lv7_A FTSH; alpha/beta domain 57.5 3.6 0.00012 42.9 1.7 50 413-462 8-62 (257)
131 2qjx_A Protein BIM1; calponin 57.4 18 0.00063 35.4 6.5 79 22-113 33-114 (127)
132 3tnu_A Keratin, type I cytoske 57.1 56 0.0019 31.7 9.9 52 291-342 39-90 (131)
133 3eiq_A Eukaryotic initiation f 57.0 3.3 0.00011 45.5 1.4 26 435-462 69-94 (414)
134 3h4m_A Proteasome-activating n 57.0 2.7 9.4E-05 44.3 0.7 50 413-462 13-68 (285)
135 1p9r_A General secretion pathw 56.9 3.2 0.00011 47.8 1.2 27 436-462 158-184 (418)
136 3oja_B Anopheles plasmodium-re 56.8 1.3E+02 0.0045 35.1 15.1 23 301-323 527-549 (597)
137 3b9p_A CG5977-PA, isoform A; A 56.7 2.3 7.9E-05 45.2 0.0 50 413-462 17-71 (297)
138 2oxc_A Probable ATP-dependent 56.5 3.3 0.00011 42.6 1.1 24 436-461 54-77 (230)
139 2qby_B CDC6 homolog 3, cell di 56.4 2.9 9.9E-05 45.7 0.8 38 425-462 24-62 (384)
140 3mq7_A Bone marrow stromal ant 56.2 19 0.00065 34.8 6.1 31 708-738 71-101 (121)
141 3fe2_A Probable ATP-dependent 55.8 2.8 9.7E-05 43.4 0.5 24 437-462 60-83 (242)
142 3d8b_A Fidgetin-like protein 1 55.6 2.4 8.1E-05 47.2 -0.1 20 443-462 115-134 (357)
143 3pvs_A Replication-associated 55.4 4 0.00014 47.3 1.7 39 424-462 29-67 (447)
144 3ber_A Probable ATP-dependent 55.4 3.5 0.00012 43.2 1.2 25 436-462 73-97 (249)
145 3jvv_A Twitching mobility prot 53.8 3.3 0.00011 46.7 0.6 25 438-462 116-140 (356)
146 3tnu_B Keratin, type II cytosk 53.7 60 0.002 31.4 9.5 51 292-342 38-88 (129)
147 1hqc_A RUVB; extended AAA-ATPa 53.1 5.2 0.00018 42.8 2.1 44 415-462 10-55 (324)
148 3pfi_A Holliday junction ATP-d 53.0 5.2 0.00018 43.3 2.1 44 415-462 27-72 (338)
149 3fmp_B ATP-dependent RNA helic 52.3 4.4 0.00015 46.2 1.4 26 436-461 122-147 (479)
150 1njg_A DNA polymerase III subu 52.1 5.2 0.00018 39.6 1.8 17 446-462 46-62 (250)
151 2j0s_A ATP-dependent RNA helic 51.9 3.9 0.00013 45.1 0.9 25 436-462 67-91 (410)
152 3fht_A ATP-dependent RNA helic 51.2 4.5 0.00015 44.3 1.2 27 436-462 55-81 (412)
153 1q0u_A Bstdead; DEAD protein, 51.2 2.5 8.5E-05 43.0 -0.8 25 436-462 34-58 (219)
154 3i00_A HIP-I, huntingtin-inter 50.8 80 0.0027 30.6 9.7 68 295-365 13-80 (120)
155 2yy0_A C-MYC-binding protein; 50.3 20 0.00068 30.1 4.7 35 705-739 16-50 (53)
156 1xwi_A SKD1 protein; VPS4B, AA 50.1 3.7 0.00013 45.1 0.3 49 414-462 9-62 (322)
157 3oja_B Anopheles plasmodium-re 50.0 2.4E+02 0.0082 32.9 15.7 44 298-341 510-556 (597)
158 3pey_A ATP-dependent RNA helic 49.5 4.6 0.00016 43.8 0.9 27 436-462 35-61 (395)
159 1iqp_A RFCS; clamp loader, ext 48.6 7 0.00024 41.5 2.2 34 426-462 30-63 (327)
160 3u61_B DNA polymerase accessor 48.1 6.9 0.00024 42.1 2.0 41 415-462 24-65 (324)
161 2chq_A Replication factor C sm 48.0 4.9 0.00017 42.5 0.8 41 415-462 15-55 (319)
162 1w5s_A Origin recognition comp 48.0 5 0.00017 44.2 1.0 29 434-462 35-69 (412)
163 4fcw_A Chaperone protein CLPB; 48.0 5.6 0.00019 42.3 1.3 38 425-462 21-64 (311)
164 2fz4_A DNA repair protein RAD2 47.9 5.6 0.00019 41.6 1.3 25 437-463 102-126 (237)
165 2eyu_A Twitching motility prot 47.5 5.7 0.0002 42.6 1.3 17 446-462 26-42 (261)
166 2z0m_A 337AA long hypothetical 47.3 5.1 0.00018 42.4 0.9 25 436-462 24-48 (337)
167 1gvn_B Zeta; postsegregational 47.3 11 0.00038 40.8 3.5 36 427-462 10-50 (287)
168 3n70_A Transport activator; si 47.3 7.4 0.00025 37.3 1.9 19 444-462 23-41 (145)
169 2i4i_A ATP-dependent RNA helic 46.9 5.3 0.00018 44.0 0.9 25 436-462 45-69 (417)
170 1sxj_E Activator 1 40 kDa subu 46.7 5.4 0.00019 43.3 1.0 42 415-462 12-53 (354)
171 3o0z_A RHO-associated protein 46.5 1.3E+02 0.0045 30.8 10.9 71 294-364 45-129 (168)
172 3vfd_A Spastin; ATPase, microt 46.5 4.9 0.00017 45.0 0.6 50 413-462 111-165 (389)
173 2jlq_A Serine protease subunit 46.4 6 0.00021 45.3 1.3 27 434-461 9-35 (451)
174 1s2m_A Putative ATP-dependent 45.3 5.3 0.00018 43.8 0.6 25 436-462 51-75 (400)
175 2dfs_A Myosin-5A; myosin-V, in 44.8 95 0.0033 40.0 11.9 36 303-338 997-1032(1080)
176 3na7_A HP0958; flagellar bioge 43.7 2.2E+02 0.0074 30.3 12.9 45 297-341 118-162 (256)
177 2ewv_A Twitching motility prot 43.0 6.8 0.00023 44.2 1.0 18 445-462 136-153 (372)
178 3h1t_A Type I site-specific re 42.7 6.9 0.00024 46.0 1.1 27 436-463 190-216 (590)
179 1ofh_A ATP-dependent HSL prote 42.7 5.3 0.00018 42.2 0.1 18 445-462 50-67 (310)
180 3oiy_A Reverse gyrase helicase 42.4 8 0.00027 43.0 1.5 24 436-461 29-52 (414)
181 3fho_A ATP-dependent RNA helic 42.4 7.5 0.00026 45.2 1.3 27 436-462 149-175 (508)
182 1xti_A Probable ATP-dependent 42.2 7.3 0.00025 42.4 1.1 25 436-462 38-62 (391)
183 1tue_A Replication protein E1; 42.0 5.1 0.00017 42.5 -0.2 26 438-463 49-76 (212)
184 2qp9_X Vacuolar protein sortin 41.7 6.4 0.00022 43.8 0.5 49 414-462 48-101 (355)
185 1rif_A DAR protein, DNA helica 41.6 4.7 0.00016 42.8 -0.5 24 438-463 123-146 (282)
186 1u0j_A DNA replication protein 41.5 9.7 0.00033 41.5 1.9 29 434-462 90-121 (267)
187 1jr3_A DNA polymerase III subu 41.3 11 0.00036 41.1 2.2 36 425-462 20-55 (373)
188 2v66_B Nuclear distribution pr 40.6 2.3E+02 0.0077 27.2 10.9 67 295-362 33-100 (111)
189 1sxj_D Activator 1 41 kDa subu 40.3 8.4 0.00029 41.5 1.2 23 440-462 53-75 (353)
190 3i5x_A ATP-dependent RNA helic 39.6 9.4 0.00032 44.4 1.6 26 436-461 102-127 (563)
191 3eie_A Vacuolar protein sortin 39.5 9.6 0.00033 41.5 1.5 49 414-462 15-68 (322)
192 4a2p_A RIG-I, retinoic acid in 38.5 9.1 0.00031 43.8 1.2 25 436-462 15-39 (556)
193 2oap_1 GSPE-2, type II secreti 37.8 8.7 0.0003 45.4 0.9 20 441-462 258-277 (511)
194 1ojl_A Transcriptional regulat 37.7 11 0.00039 40.9 1.7 32 430-462 11-42 (304)
195 3tbk_A RIG-I helicase domain; 36.5 10 0.00035 43.2 1.2 25 436-462 12-36 (555)
196 2v1x_A ATP-dependent DNA helic 36.4 12 0.00041 44.7 1.8 25 436-462 52-76 (591)
197 2zan_A Vacuolar protein sortin 36.1 6.9 0.00024 45.0 -0.3 17 446-462 168-184 (444)
198 2db3_A ATP-dependent RNA helic 35.9 12 0.00042 42.3 1.7 25 436-462 86-110 (434)
199 1fuu_A Yeast initiation factor 35.8 5.4 0.00019 43.4 -1.2 25 436-462 51-75 (394)
200 3vkg_A Dynein heavy chain, cyt 35.3 1.6E+02 0.0054 42.5 12.4 27 664-693 2642-2668(3245)
201 2fwr_A DNA repair protein RAD2 34.5 12 0.00041 42.4 1.3 24 437-462 102-125 (472)
202 1in4_A RUVB, holliday junction 34.0 13 0.00045 40.7 1.5 44 415-462 23-68 (334)
203 3iv1_A Tumor susceptibility ge 33.8 2.7E+02 0.0092 25.2 9.6 54 294-351 15-68 (78)
204 1n0w_A DNA repair protein RAD5 33.8 12 0.00041 38.0 1.1 29 434-462 10-41 (243)
205 1qvr_A CLPB protein; coiled co 33.6 7.4 0.00025 48.4 -0.6 43 415-464 168-210 (854)
206 4b3f_X DNA-binding protein smu 33.5 10 0.00035 45.6 0.5 27 436-463 197-223 (646)
207 1hv8_A Putative ATP-dependent 33.3 9.9 0.00034 40.7 0.4 25 437-462 37-61 (367)
208 3lw7_A Adenylate kinase relate 33.2 12 0.00041 35.4 0.9 16 447-462 3-18 (179)
209 4b4t_H 26S protease regulatory 33.1 25 0.00085 41.3 3.7 78 414-492 206-303 (467)
210 3ra3_B P2F; coiled coil domain 33.0 36 0.0012 24.4 3.0 25 710-734 2-26 (28)
211 4gp7_A Metallophosphoesterase; 32.8 10 0.00035 37.4 0.3 17 447-463 11-27 (171)
212 3pxi_A Negative regulator of g 32.7 16 0.00055 44.7 2.1 38 425-462 495-538 (758)
213 1sxj_B Activator 1 37 kDa subu 32.5 13 0.00043 39.4 1.0 34 426-462 26-59 (323)
214 2w0m_A SSO2452; RECA, SSPF, un 32.5 14 0.00049 36.8 1.4 27 436-462 11-40 (235)
215 3hws_A ATP-dependent CLP prote 32.4 9.5 0.00033 42.1 0.0 18 445-462 51-68 (363)
216 4gl2_A Interferon-induced heli 32.4 13 0.00043 44.5 1.1 26 436-463 15-40 (699)
217 1c4o_A DNA nucleotide excision 32.2 17 0.00058 44.1 2.2 41 420-464 7-47 (664)
218 1sxj_A Activator 1 95 kDa subu 32.1 10 0.00035 44.4 0.2 17 446-462 78-94 (516)
219 3e70_C DPA, signal recognition 31.7 22 0.00076 39.5 2.8 18 445-462 129-146 (328)
220 2r44_A Uncharacterized protein 31.4 9.2 0.00031 41.4 -0.3 16 447-462 48-63 (331)
221 3hu3_A Transitional endoplasmi 31.4 11 0.00037 44.2 0.3 49 414-462 201-255 (489)
222 3sqw_A ATP-dependent RNA helic 31.3 15 0.00052 43.1 1.5 26 436-461 51-76 (579)
223 1wp9_A ATP-dependent RNA helic 31.3 13 0.00046 40.8 1.0 25 436-463 17-41 (494)
224 1w36_D RECD, exodeoxyribonucle 31.2 11 0.00038 45.2 0.3 18 446-463 165-182 (608)
225 1lkx_A Myosin IE heavy chain; 30.9 15 0.00051 45.2 1.3 34 429-462 77-111 (697)
226 4ag6_A VIRB4 ATPase, type IV s 30.6 11 0.00037 42.2 0.1 19 442-462 34-52 (392)
227 3b9q_A Chloroplast SRP recepto 30.5 20 0.0007 39.2 2.3 17 446-462 101-117 (302)
228 2x8a_A Nuclear valosin-contain 30.4 11 0.00038 40.4 0.1 15 448-462 47-61 (274)
229 2qag_C Septin-7; cell cycle, c 30.0 13 0.00045 42.8 0.6 24 439-462 25-48 (418)
230 3tr0_A Guanylate kinase, GMP k 29.8 12 0.00042 37.1 0.3 16 447-462 9-24 (205)
231 2dfs_A Myosin-5A; myosin-V, in 29.8 1.9E+02 0.0064 37.4 11.1 44 296-339 997-1040(1080)
232 2cvh_A DNA repair and recombin 29.8 16 0.00054 36.5 1.1 28 435-462 7-37 (220)
233 1r6b_X CLPA protein; AAA+, N-t 29.6 20 0.00067 43.8 2.1 37 426-462 463-505 (758)
234 1um8_A ATP-dependent CLP prote 29.5 13 0.00043 41.2 0.4 18 445-462 72-89 (376)
235 1w9i_A Myosin II heavy chain; 29.4 16 0.00055 45.4 1.3 34 429-462 155-189 (770)
236 3b85_A Phosphate starvation-in 29.4 15 0.0005 38.1 0.8 25 436-462 15-39 (208)
237 2v26_A Myosin VI; calmodulin-b 29.4 16 0.00055 45.4 1.3 34 429-462 123-157 (784)
238 1e9r_A Conjugal transfer prote 29.3 11 0.00039 42.5 0.0 19 444-462 52-70 (437)
239 1qvr_A CLPB protein; coiled co 29.1 19 0.00064 44.8 1.9 37 426-462 563-605 (854)
240 1yks_A Genome polyprotein [con 28.9 16 0.00056 41.7 1.2 21 440-462 5-25 (440)
241 1kk8_A Myosin heavy chain, str 28.6 17 0.00058 45.6 1.3 34 429-462 152-186 (837)
242 2ykg_A Probable ATP-dependent 28.5 19 0.00065 42.9 1.7 24 437-462 22-45 (696)
243 3upu_A ATP-dependent DNA helic 28.3 19 0.00067 41.2 1.7 36 423-462 27-62 (459)
244 1g8x_A Myosin II heavy chain f 28.2 17 0.00059 46.5 1.3 34 429-462 155-189 (1010)
245 2p5t_B PEZT; postsegregational 28.1 29 0.001 36.3 2.9 17 446-462 33-49 (253)
246 2px0_A Flagellar biosynthesis 27.9 17 0.00058 39.6 1.1 16 447-462 107-122 (296)
247 2qnr_A Septin-2, protein NEDD5 27.8 13 0.00046 40.4 0.2 24 439-462 12-35 (301)
248 1w7j_A Myosin VA; motor protei 27.7 18 0.00062 45.1 1.3 34 429-462 139-173 (795)
249 3tau_A Guanylate kinase, GMP k 27.6 14 0.00048 37.5 0.3 16 447-462 10-25 (208)
250 3lfu_A DNA helicase II; SF1 he 27.5 19 0.00064 42.6 1.4 19 445-463 22-40 (647)
251 2ycu_A Non muscle myosin 2C, a 27.4 18 0.00062 46.1 1.3 34 429-462 129-163 (995)
252 2yhs_A FTSY, cell division pro 27.4 23 0.0008 41.9 2.1 16 447-462 295-310 (503)
253 1ly1_A Polynucleotide kinase; 27.4 17 0.00058 35.0 0.8 17 446-462 3-19 (181)
254 4db1_A Myosin-7; S1DC, cardiac 27.3 19 0.00063 44.9 1.3 34 429-462 154-188 (783)
255 4a74_A DNA repair and recombin 27.2 20 0.00067 36.0 1.3 28 435-462 12-42 (231)
256 3a7p_A Autophagy protein 16; c 27.0 4.1E+02 0.014 26.8 10.6 23 298-320 69-91 (152)
257 1kgd_A CASK, peripheral plasma 26.9 15 0.0005 36.5 0.3 16 447-462 7-22 (180)
258 3ghg_A Fibrinogen alpha chain; 26.8 4.4E+02 0.015 31.5 12.3 44 295-338 108-154 (562)
259 3hnw_A Uncharacterized protein 26.8 3.7E+02 0.013 26.4 10.3 18 213-230 28-45 (138)
260 3sop_A Neuronal-specific septi 26.6 16 0.00053 39.4 0.5 19 444-462 1-19 (270)
261 3trf_A Shikimate kinase, SK; a 26.3 18 0.00062 35.3 0.8 16 447-462 7-22 (185)
262 1zp6_A Hypothetical protein AT 26.3 15 0.00052 36.0 0.3 16 447-462 11-26 (191)
263 2ce7_A Cell division protein F 26.3 22 0.00074 41.7 1.6 46 413-462 12-66 (476)
264 2r8r_A Sensor protein; KDPD, P 26.2 14 0.00049 39.4 0.1 20 445-464 6-25 (228)
265 4anj_A Unconventional myosin-V 26.2 20 0.00068 46.1 1.3 34 429-462 127-161 (1052)
266 2dr3_A UPF0273 protein PH0284; 26.1 19 0.00065 36.5 1.0 27 436-462 11-40 (247)
267 1rz3_A Hypothetical protein rb 26.1 27 0.00091 35.2 2.0 18 445-462 22-39 (201)
268 3a00_A Guanylate kinase, GMP k 26.0 15 0.0005 36.5 0.1 15 448-462 4-18 (186)
269 1qhx_A CPT, protein (chloramph 25.7 19 0.00065 34.9 0.8 17 446-462 4-20 (178)
270 2dhr_A FTSH; AAA+ protein, hex 25.6 25 0.00084 41.5 1.9 46 413-462 27-81 (499)
271 1x79_B RAB GTPase binding effe 25.5 4.6E+02 0.016 25.2 10.9 24 344-367 75-98 (112)
272 3hnw_A Uncharacterized protein 25.0 5E+02 0.017 25.5 11.1 29 299-327 77-105 (138)
273 3iij_A Coilin-interacting nucl 25.0 19 0.00064 35.2 0.7 16 447-462 13-28 (180)
274 4a4z_A Antiviral helicase SKI2 24.8 23 0.00077 45.2 1.5 24 436-461 47-70 (997)
275 1lvg_A Guanylate kinase, GMP k 24.6 16 0.00055 36.9 0.1 16 447-462 6-21 (198)
276 2gk6_A Regulator of nonsense t 24.6 20 0.00068 43.0 0.9 17 447-463 197-213 (624)
277 3c8u_A Fructokinase; YP_612366 24.6 27 0.00091 35.3 1.7 17 446-462 23-39 (208)
278 2og2_A Putative signal recogni 24.5 31 0.001 39.0 2.3 17 446-462 158-174 (359)
279 1oyw_A RECQ helicase, ATP-depe 24.5 12 0.00041 43.9 -1.0 25 436-462 33-57 (523)
280 2j41_A Guanylate kinase; GMP, 24.4 17 0.0006 35.9 0.3 16 447-462 8-23 (207)
281 3cve_A Homer protein homolog 1 24.2 3.8E+02 0.013 23.9 8.8 50 301-350 18-67 (72)
282 3pxg_A Negative regulator of g 24.1 39 0.0013 39.0 3.2 43 415-464 178-220 (468)
283 4a2q_A RIG-I, retinoic acid in 23.9 22 0.00077 43.6 1.2 25 436-462 256-280 (797)
284 3lnc_A Guanylate kinase, GMP k 23.8 21 0.00073 36.5 0.8 15 448-462 30-44 (231)
285 1rj9_A FTSY, signal recognitio 23.7 20 0.00067 39.4 0.5 16 447-462 104-119 (304)
286 1ye8_A Protein THEP1, hypothet 23.6 18 0.00062 36.3 0.3 15 448-462 3-17 (178)
287 2ehv_A Hypothetical protein PH 23.4 18 0.00063 36.7 0.3 15 448-462 33-47 (251)
288 2zj8_A DNA helicase, putative 23.2 20 0.00067 43.5 0.4 21 440-462 36-56 (720)
289 1gm5_A RECG; helicase, replica 23.1 24 0.00083 43.8 1.3 40 420-462 367-406 (780)
290 4a2w_A RIG-I, retinoic acid in 23.1 22 0.00076 44.8 0.9 26 436-463 256-281 (936)
291 2bdt_A BH3686; alpha-beta prot 23.1 19 0.00065 35.5 0.3 16 447-462 4-19 (189)
292 2v6i_A RNA helicase; membrane, 23.0 25 0.00084 40.1 1.2 16 447-462 4-19 (431)
293 2v66_B Nuclear distribution pr 23.0 4.4E+02 0.015 25.2 9.6 55 294-348 7-68 (111)
294 2v71_A Nuclear distribution pr 22.7 5.6E+02 0.019 26.6 11.1 34 295-328 47-80 (189)
295 3dm5_A SRP54, signal recogniti 22.6 34 0.0011 39.9 2.2 19 445-463 100-118 (443)
296 3cvf_A Homer-3, homer protein 22.5 4.2E+02 0.014 24.0 8.8 52 301-352 24-75 (79)
297 3vaa_A Shikimate kinase, SK; s 22.5 24 0.00082 35.3 0.9 16 447-462 27-42 (199)
298 2gza_A Type IV secretion syste 22.4 19 0.00064 40.3 0.1 21 440-462 172-192 (361)
299 1i84_S Smooth muscle myosin he 22.4 18 0.00063 46.8 0.0 16 354-369 1145-1160(1184)
300 3kl4_A SRP54, signal recogniti 22.3 32 0.0011 39.9 2.0 18 445-462 97-114 (433)
301 1kht_A Adenylate kinase; phosp 22.3 25 0.00085 34.1 0.9 16 447-462 5-20 (192)
302 1gk4_A Vimentin; intermediate 22.2 3.3E+02 0.011 24.4 8.2 7 346-352 71-77 (84)
303 2d7d_A Uvrabc system protein B 22.1 33 0.0011 41.5 2.2 48 413-464 4-51 (661)
304 2pt7_A CAG-ALFA; ATPase, prote 22.1 19 0.00066 39.8 0.1 19 442-462 170-188 (330)
305 1znw_A Guanylate kinase, GMP k 21.9 21 0.00071 36.1 0.3 21 440-462 17-37 (207)
306 1uf9_A TT1252 protein; P-loop, 21.9 28 0.00096 34.3 1.2 21 442-462 5-25 (203)
307 2orw_A Thymidine kinase; TMTK, 21.5 15 0.00053 37.0 -0.8 18 447-464 5-22 (184)
308 2z83_A Helicase/nucleoside tri 21.3 27 0.00091 40.1 1.1 15 448-462 24-38 (459)
309 1kag_A SKI, shikimate kinase I 21.1 25 0.00087 33.8 0.7 16 447-462 6-21 (173)
310 2b8t_A Thymidine kinase; deoxy 21.1 18 0.00063 38.1 -0.3 19 446-464 13-31 (223)
311 2i3b_A HCR-ntpase, human cance 20.9 21 0.00073 36.3 0.1 16 447-462 3-18 (189)
312 1ypw_A Transitional endoplasmi 20.8 27 0.00094 43.3 1.1 51 412-462 199-255 (806)
313 3ol1_A Vimentin; structural ge 20.7 5.5E+02 0.019 24.4 10.0 21 310-330 40-60 (119)
314 3kb2_A SPBC2 prophage-derived 20.7 27 0.00094 33.2 0.8 16 447-462 3-18 (173)
315 2oca_A DAR protein, ATP-depend 20.7 21 0.00073 40.8 0.1 35 420-463 112-146 (510)
316 1r6b_X CLPA protein; AAA+, N-t 20.7 30 0.001 42.1 1.4 43 415-464 184-226 (758)
317 3cf2_A TER ATPase, transitiona 20.7 48 0.0016 41.5 3.2 50 413-462 200-255 (806)
318 2whx_A Serine protease/ntpase/ 20.7 33 0.0011 41.3 1.7 24 437-462 180-203 (618)
319 1gku_B Reverse gyrase, TOP-RG; 20.5 33 0.0011 44.0 1.7 23 436-460 64-86 (1054)
320 1z6g_A Guanylate kinase; struc 20.1 22 0.00077 36.5 0.1 15 448-462 26-40 (218)
321 2yy0_A C-MYC-binding protein; 20.0 1.5E+02 0.0051 24.8 5.0 27 299-325 21-47 (53)
No 1
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-92 Score=809.74 Aligned_cols=348 Identities=42% Similarity=0.646 Sum_probs=298.6
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCEEEEEEeCCCCCC-CCCCCCceEEec--C-CC--cEEEeCCCCCCCCCceeEeece
Q 001334 345 SSSYQKVLEENRVLYNQVQDLKGTIRVYCRVRPFLPG-QSNGQSTVDYIG--E-NG--NIMVTNPFKQGKDARKMFLFNK 418 (1097)
Q Consensus 345 ~~~~~~~l~err~L~N~lqelKGnIRV~cRVRP~~~~-E~~~~s~v~~~~--~-~~--~i~I~~p~~~gk~~~k~F~FD~ 418 (1097)
...|.+...+||+|||+++|+||||||||||||+++. +......+.+.. + .+ .+.+... .+....+.|.||+
T Consensus 37 ~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~F~FD~ 114 (403)
T 4etp_A 37 NEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKI--QNTAQVHEFKFDK 114 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEEC--SSSCEEEEEEESE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecC--CCCcCceEEEcCE
Confidence 4456667778999999999999999999999999877 333334444331 1 11 2233322 2233468899999
Q ss_pred eeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhh-cCCceEEE
Q 001334 419 VFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNT-RGDMIKYE 497 (1097)
Q Consensus 419 VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~-~~~~~~y~ 497 (1097)
||+++++|++||+++.|+|+++|+|||+||||||||||||||||+|++ .|||||++++||..+.. ....|.|.
T Consensus 115 VF~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~~------~Giipr~~~~lF~~i~~~~~~~~~~~ 188 (403)
T 4etp_A 115 IFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPG------DGIIPSTISHIFNWINKLKTKGWDYK 188 (403)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCTT------TSHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred EECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeCCCC------CccchhHHHHHHHHHHhhhccCceEE
Confidence 999999999999999999999999999999999999999999999953 59999999999998765 45578999
Q ss_pred EEEEEEEEecceeeeccCCCC-------CCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcC
Q 001334 498 VGVQMIEIYNEQVRDLLVSDG-------SNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNE 570 (1097)
Q Consensus 498 V~VS~lEIYNE~V~DLL~~~~-------~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~ 570 (1097)
|+|||+|||||+|+|||.+.. ....+.++.++..+|++|.|++++.|.|++|++.+|..|.++|++++|.||+
T Consensus 189 v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~ 268 (403)
T 4etp_A 189 VNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNE 268 (403)
T ss_dssp EEEEEEEEETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHH
T ss_pred EEEEEEEEecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCc
Confidence 999999999999999998764 2345678887776789999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEEEeeeeccCceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCC---Ccc
Q 001334 571 RSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSA---HIP 647 (1097)
Q Consensus 571 ~SSRSHaIftI~V~~~~~~~g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~---hIP 647 (1097)
.|||||+||+|+|.+.+...+....|+|+|||||||||+.++++.|+|++|+++||+||++||+||.||+++.. |||
T Consensus 269 ~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiP 348 (403)
T 4etp_A 269 HSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIP 348 (403)
T ss_dssp HHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCC
T ss_pred ccCCcccEEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCC
Confidence 99999999999999998888888899999999999999999999999999999999999999999999987654 999
Q ss_pred CCCCchhhhhhhccCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhccccccc
Q 001334 648 YRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGA 700 (1097)
Q Consensus 648 YRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~ 700 (1097)
|||||||+||||+|||||+|+|||||||+..+++||++||+||+||++|++++
T Consensus 349 yRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~ 401 (403)
T 4etp_A 349 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 401 (403)
T ss_dssp GGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC----
T ss_pred cccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999999999999999999999999999999999876
No 2
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.3e-91 Score=802.09 Aligned_cols=382 Identities=38% Similarity=0.560 Sum_probs=303.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCEEEEEEeCCCCC
Q 001334 301 RHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQKVLEENRVLYNQVQDLKGTIRVYCRVRPFLP 380 (1097)
Q Consensus 301 ~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~err~L~N~lqelKGnIRV~cRVRP~~~ 380 (1097)
++..+|.+|+....++.+++++++. ++..+ ...+.+...+||+|||+++|++|||||||||||+++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~----~~~~~----------~~~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~~ 72 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAA----ELETC----------KEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLE 72 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH----------HHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH----------HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCc
Confidence 4455555555555555544444332 12222 223445557899999999999999999999999998
Q ss_pred CCCCCCCceEEecCCCcEEEeCCCCC--CCCCceeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCc
Q 001334 381 GQSNGQSTVDYIGENGNIMVTNPFKQ--GKDARKMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGK 458 (1097)
Q Consensus 381 ~E~~~~s~v~~~~~~~~i~I~~p~~~--gk~~~k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGK 458 (1097)
.|.....++....++..+.+..+... .....+.|.||+||+++++|++||+.+.|+|+++|+|||+||||||||||||
T Consensus 73 ~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGK 152 (412)
T 3u06_A 73 SEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGK 152 (412)
T ss_dssp GGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSH
T ss_pred hhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCC
Confidence 88665555544445555655543221 2233578999999999999999999889999999999999999999999999
Q ss_pred ceeecCCCCCcccccCchHHHHHHHHHHhhhc-CCceEEEEEEEEEEEecceeeeccCCCCCCcccceecccCCCCeeec
Q 001334 459 TYTMSGPDLTAEETWGVNYRALRDLFQISNTR-GDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVP 537 (1097)
Q Consensus 459 TyTM~G~~~~~~e~~GIipRal~~LF~~~~~~-~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~l~Ir~~~~~~G~~V~ 537 (1097)
||||+|.+ +++|||||++++||..+... ...|.|.|+|||+|||||+|+|||.+......+.+..+. .+|++|.
T Consensus 153 TyTM~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~~~~~~-~~~~~v~ 227 (412)
T 3u06_A 153 TYTMDGVP----ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNN-KNDIYVS 227 (412)
T ss_dssp HHHHTEET----TEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCEEECSSC-TTSEEET
T ss_pred eeEecCCC----CCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCceeeeeecC-CCCEEEc
Confidence 99999954 57899999999999987653 446899999999999999999999765443333333433 4689999
Q ss_pred CCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeEEEeecCCCcccccchhhhh
Q 001334 538 DASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKSEAVGE 617 (1097)
Q Consensus 538 gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL~LVDLAGSER~~ks~a~G~ 617 (1097)
|++++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|.+.+...+....|+|+|||||||||.. .|.
T Consensus 228 gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~----~~~ 303 (412)
T 3u06_A 228 NITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPK----TST 303 (412)
T ss_dssp TCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCC---------
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCCCCEEEEEEEEEECCCCCcCC----ccc
Confidence 9999999999999999999999999999999999999999999999998887888889999999999999974 468
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhcccc
Q 001334 618 RLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIE 697 (1097)
Q Consensus 618 RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~ 697 (1097)
|++|+++||+||++||+||.||++++.||||||||||+||||+|||||+|+|||||||+..+++||++||+||+||++|+
T Consensus 304 rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~ 383 (412)
T 3u06_A 304 RMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 383 (412)
T ss_dssp -----CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHC
T ss_pred hhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccc
Q 001334 698 LGAARSNK 705 (1097)
Q Consensus 698 ~~~~~~~~ 705 (1097)
+++++.+.
T Consensus 384 ~~~~~~n~ 391 (412)
T 3u06_A 384 MTKAKRNR 391 (412)
T ss_dssp C-------
T ss_pred cccccccc
Confidence 98876554
No 3
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=4e-90 Score=780.12 Aligned_cols=353 Identities=41% Similarity=0.680 Sum_probs=309.0
Q ss_pred hcCCCCEEEEEEeCCCCCCCCCCCCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhhhhhhHhhhcC
Q 001334 363 QDLKGTIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVDTQPLVRSVLD 442 (1097)
Q Consensus 363 qelKGnIRV~cRVRP~~~~E~~~~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~ev~PLV~svLd 442 (1097)
||++|+|||||||||+...|.....++.+... +.+.+..+... ...+.|.||+||+++++|++||+.+.|+|+++++
T Consensus 1 ee~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~lv~~~l~ 77 (369)
T 3cob_A 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSV-DEFTVEHLWKD--DKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVD 77 (369)
T ss_dssp ---CCBCEEEEEECCCCHHHHHTTCCBCEEEC-SSSEEEEECTT--SCEEEEECSEEECTTCCHHHHHHTTTHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCChhhccCCCcEEEEcC-CcEEEEecCCC--CCceEEecCEEECCCCCcceehhhhhhhhHhhhc
Confidence 68999999999999998876544444443332 23333332222 2358999999999999999999999999999999
Q ss_pred CcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCC-Cc
Q 001334 443 GFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGS-NR 521 (1097)
Q Consensus 443 GyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~-~~ 521 (1097)
|||+||||||||||||||||+|++ +++|||||++++||..+......+.|.|+|||+|||||+|+|||.+... ..
T Consensus 78 G~n~tifAYGqTGSGKTyTM~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 153 (369)
T 3cob_A 78 GYNVCIFAYGQTGSGKTFTIYGAD----SNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRL 153 (369)
T ss_dssp TCEEEEEEEECTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCC
T ss_pred CCceEEEEECCCCCCCeEeecCCC----CCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCc
Confidence 999999999999999999999964 5789999999999999988877799999999999999999999987643 46
Q ss_pred ccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeEEEe
Q 001334 522 RLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLV 601 (1097)
Q Consensus 522 ~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL~LV 601 (1097)
.+.|+++.. +|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+...+....|+|+||
T Consensus 154 ~l~i~e~~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lV 232 (369)
T 3cob_A 154 KLDIKKDSK-GMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFV 232 (369)
T ss_dssp CCEEEECTT-SCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEE
T ss_pred ceEEEECCC-CCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEE
Confidence 788998865 7899999999999999999999999999999999999999999999999999998887888889999999
Q ss_pred ecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcHH
Q 001334 602 DLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIG 681 (1097)
Q Consensus 602 DLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ 681 (1097)
|||||||+.++++.|.|++|+++||+||++||+||.||++++.||||||||||+||||+|||||+|+|||||||+..+++
T Consensus 233 DLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ 312 (369)
T 3cob_A 233 DLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLD 312 (369)
T ss_dssp ECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHH
T ss_pred eCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccccchhHHHHHHHHHHHHHHHH
Q 001334 682 ETISTLKFAERVSSIELGAARSNKESGEIRELREEISNLKQTL 724 (1097)
Q Consensus 682 ETLsTLrFAsRak~I~~~~~~~~~~~~~i~eLreEI~~LK~~L 724 (1097)
||++||+||+||+.|++.+..+... .+|.+|++++..|++++
T Consensus 313 ETl~TLrfA~rak~i~~~~~~n~~~-~ei~~L~~~l~~~~~~~ 354 (369)
T 3cob_A 313 ETHNSLTYASRVRSIVNDPSKNVSS-KEVARLKKLVSYWKEQA 354 (369)
T ss_dssp HHHHHHHHHHHHHTCBCCCCCCEEC-HHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHhhcccCCcccCCH-HHHHHHHHHHHHHHHhc
Confidence 9999999999999999998766544 55555555555555443
No 4
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.9e-89 Score=774.67 Aligned_cols=342 Identities=43% Similarity=0.676 Sum_probs=259.4
Q ss_pred HHHhhhhhhcCCCCEEEEEEeCCCCCCCCCCCC-ceEEec-------CCCcEEEeCCCC--------CCCCCceeEeece
Q 001334 355 NRVLYNQVQDLKGTIRVYCRVRPFLPGQSNGQS-TVDYIG-------ENGNIMVTNPFK--------QGKDARKMFLFNK 418 (1097)
Q Consensus 355 rr~L~N~lqelKGnIRV~cRVRP~~~~E~~~~s-~v~~~~-------~~~~i~I~~p~~--------~gk~~~k~F~FD~ 418 (1097)
.-+|||++++++|||||||||||+++.|..... .+.+.. ++..+.+..+.. ......+.|.||+
T Consensus 10 ~~~~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~ 89 (376)
T 2rep_A 10 HSSGLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDR 89 (376)
T ss_dssp -------------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSE
T ss_pred cccccchhhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecE
Confidence 367999999999999999999999998866542 222221 223344433211 0112346899999
Q ss_pred eeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhc-CCceEEE
Q 001334 419 VFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTR-GDMIKYE 497 (1097)
Q Consensus 419 VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~-~~~~~y~ 497 (1097)
||+++++|++||+++.|+|+++|+|||+||||||||||||||||+|++....+.+|||||++++||+.+... ...+.|.
T Consensus 90 Vf~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~ 169 (376)
T 2rep_A 90 VFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYS 169 (376)
T ss_dssp EECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEE
T ss_pred EcCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEE
Confidence 999999999999998899999999999999999999999999999986555678999999999999988754 3468999
Q ss_pred EEEEEEEEecceeeeccCCCC---CCcccceeccc-CCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCC
Q 001334 498 VGVQMIEIYNEQVRDLLVSDG---SNRRLDIRNTA-QANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSS 573 (1097)
Q Consensus 498 V~VS~lEIYNE~V~DLL~~~~---~~~~l~Ir~~~-~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SS 573 (1097)
|+|||+|||||+|||||.+.. ....+.++++. ...|++|.|++++.|.+++|++.+|..|.++|++++|.||+.||
T Consensus 170 v~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SS 249 (376)
T 2rep_A 170 FVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSS 249 (376)
T ss_dssp EEEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGG
T ss_pred EEEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCC
Confidence 999999999999999998752 23467788764 34789999999999999999999999999999999999999999
Q ss_pred CceEEEEEEEEeeeeccCceeeeeEEEeecCCCcccccchhhh----hhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCC
Q 001334 574 RSHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKSEAVG----ERLKEAQHINRSLSALGDVISALAQKSAHIPYR 649 (1097)
Q Consensus 574 RSHaIftI~V~~~~~~~g~~~~skL~LVDLAGSER~~ks~a~G----~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYR 649 (1097)
|||+||+|+|.+.+...+....|+|+|||||||||++++++.| +|++|+++||+||++||+||.||+++..|||||
T Consensus 250 RSH~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYR 329 (376)
T 2rep_A 250 RSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYR 329 (376)
T ss_dssp GSEEEEEEEEEEEESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCCCGG
T ss_pred CceEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCc
Confidence 9999999999998877777888999999999999999999999 999999999999999999999999999999999
Q ss_pred CCchhhhhhhccCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhccc
Q 001334 650 NSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696 (1097)
Q Consensus 650 dSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I 696 (1097)
|||||+||||+||||++|+|||||||+..+++||++||+||+||++|
T Consensus 330 dSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 330 NSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp GSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999875
No 5
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=1.3e-88 Score=763.50 Aligned_cols=329 Identities=45% Similarity=0.692 Sum_probs=269.0
Q ss_pred cCCCCEEEEEEeCCCCCCCCCCCCceEEe--c-CCC--cEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhhhhhhHh
Q 001334 364 DLKGTIRVYCRVRPFLPGQSNGQSTVDYI--G-ENG--NIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVDTQPLVR 438 (1097)
Q Consensus 364 elKGnIRV~cRVRP~~~~E~~~~s~v~~~--~-~~~--~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~ev~PLV~ 438 (1097)
+|||||||||||||+++.|......+.+. . ..+ .+.+..+ .+....+.|.||+||+++++|++||+++.|+|+
T Consensus 2 ~lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v~~lv~ 79 (349)
T 3t0q_A 2 ALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRN--EGRILSYNFQFDMIFEPSHTNKEIFEEIRQLVQ 79 (349)
T ss_dssp ---CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEEC--C--CEEEEEEESEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCC--CCcccceeeecCEEECCCccHHHHHHHHHHHHH
Confidence 68999999999999999887665554432 1 122 2333332 233446789999999999999999999999999
Q ss_pred hhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhh-cCCceEEEEEEEEEEEecceeeeccCCC
Q 001334 439 SVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNT-RGDMIKYEVGVQMIEIYNEQVRDLLVSD 517 (1097)
Q Consensus 439 svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~-~~~~~~y~V~VS~lEIYNE~V~DLL~~~ 517 (1097)
++|+|||+||||||||||||||||+|++ .|||||++++||+.+.. ....|.|.|+|||+|||||+|+|||.+.
T Consensus 80 ~~l~G~n~tifAYGqTGSGKTyTm~g~~------~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 153 (349)
T 3t0q_A 80 SSLDGYNVCIFAYGQTGSGKTYTMLNAG------DGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDF 153 (349)
T ss_dssp GGGTTCEEEEEEECSTTSSHHHHHHSTT------TSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC--
T ss_pred HHHCCcceeEEEeCCCCCCCceEeCCCC------CchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccc
Confidence 9999999999999999999999999953 59999999999998765 3446899999999999999999999865
Q ss_pred C---------CCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeee
Q 001334 518 G---------SNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGREL 588 (1097)
Q Consensus 518 ~---------~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~ 588 (1097)
. ....+.|+++....|++|.|++++.|.|++|++.+|..|.++|++++|.||+.|||||+||+|+|.+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 233 (349)
T 3t0q_A 154 KSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNL 233 (349)
T ss_dssp -------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEET
T ss_pred ccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEec
Confidence 4 2456778887776789999999999999999999999999999999999999999999999999999988
Q ss_pred ccCceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCC---CCccCCCCchhhhhhhccCCCc
Q 001334 589 VTGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKS---AHIPYRNSKLTQVLQDSLGGHA 665 (1097)
Q Consensus 589 ~~g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~---~hIPYRdSKLTrLLqDSLGGnS 665 (1097)
..+....|+|+|||||||||+.++++.|+|++|+++||+||++||+||.||+++. .||||||||||+||||+|||||
T Consensus 234 ~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGns 313 (349)
T 3t0q_A 234 HTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDS 313 (349)
T ss_dssp TTCCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTC
T ss_pred CCCCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCc
Confidence 8888899999999999999999999999999999999999999999999998755 4999999999999999999999
Q ss_pred eeeEEEecCCCCCcHHHHHHHHHHHHHhccccccc
Q 001334 666 KTLMFVHINPEHNAIGETISTLKFAERVSSIELGA 700 (1097)
Q Consensus 666 kTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~ 700 (1097)
+|+|||||||+..+++||++||+||+||++|++++
T Consensus 314 kt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 314 KTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 99999999999999999999999999999998764
No 6
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=5e-87 Score=745.60 Aligned_cols=326 Identities=48% Similarity=0.725 Sum_probs=280.8
Q ss_pred cCCCCEEEEEEeCCCCCCCCCC---CCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhhhhhhHhhh
Q 001334 364 DLKGTIRVYCRVRPFLPGQSNG---QSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVDTQPLVRSV 440 (1097)
Q Consensus 364 elKGnIRV~cRVRP~~~~E~~~---~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~ev~PLV~sv 440 (1097)
+++|+|||+|||||+...|... ..++.+..+++.++.... ....+.|.||+||+++++|++||+++.|+|+++
T Consensus 1 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~ 76 (330)
T 2h58_A 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLH----KGKPVSFELDKVFSPQASQQDVFQEVQALVTSC 76 (330)
T ss_dssp ----CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEE----TTEEEEEECSEEECTTCCHHHHHTTTHHHHHHH
T ss_pred CCCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcC----CCCeeEEecCeEeCCCCCcHhHHHHHHHHHHHH
Confidence 5799999999999999877543 234555444444433221 124578999999999999999999999999999
Q ss_pred cCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCC
Q 001334 441 LDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSN 520 (1097)
Q Consensus 441 LdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~ 520 (1097)
++|||+||||||||||||||||+|++ +++|||||++++||..++.....+.|.|+|||+|||||+|+|||.+.. .
T Consensus 77 l~G~n~tifAYGqTGSGKTyTm~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~-~ 151 (330)
T 2h58_A 77 IDGFNVCIFAYGQTGAGKTYTMEGTA----ENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEP-Q 151 (330)
T ss_dssp HTTCCEEEEEESSTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSS-C
T ss_pred hCCCEEEEEeECCCCCCCcEEEecCC----CCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccc-c
Confidence 99999999999999999999999964 568999999999999998887889999999999999999999997653 2
Q ss_pred cccceeccc-CCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeEE
Q 001334 521 RRLDIRNTA-QANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLH 599 (1097)
Q Consensus 521 ~~l~Ir~~~-~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL~ 599 (1097)
..+.++... ..+|++|.|++++.|.|++|++++|..|.++|++++|.||+.|||||+||+|+|.+.+...+....|+|+
T Consensus 152 ~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~ 231 (330)
T 2h58_A 152 EKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLN 231 (330)
T ss_dssp CCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred ccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEE
Confidence 345555422 2368999999999999999999999999999999999999999999999999999988777888899999
Q ss_pred EeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCc
Q 001334 600 LVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNA 679 (1097)
Q Consensus 600 LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~ 679 (1097)
|||||||||+.++++.|.|++|+.+||+||++||+||.||+++..||||||||||+||||+||||++|+|||||||+..+
T Consensus 232 lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~ 311 (330)
T 2h58_A 232 LVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKN 311 (330)
T ss_dssp EEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGG
T ss_pred EEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccc
Q 001334 680 IGETISTLKFAERVSSIEL 698 (1097)
Q Consensus 680 ~~ETLsTLrFAsRak~I~~ 698 (1097)
++||++||+||+||++|++
T Consensus 312 ~~ETl~TL~fA~rak~i~~ 330 (330)
T 2h58_A 312 TSETLYSLKFAERVRSVEL 330 (330)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhCcC
Confidence 9999999999999999974
No 7
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=1.7e-87 Score=753.88 Aligned_cols=328 Identities=43% Similarity=0.666 Sum_probs=273.8
Q ss_pred CCCCEEEEEEeCCCCC-CCCCCCCceEEec---CCC--cEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhhhhhhHh
Q 001334 365 LKGTIRVYCRVRPFLP-GQSNGQSTVDYIG---ENG--NIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVDTQPLVR 438 (1097)
Q Consensus 365 lKGnIRV~cRVRP~~~-~E~~~~s~v~~~~---~~~--~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~ev~PLV~ 438 (1097)
|||||||||||||+.+ .|......+.+.. ..+ .+.+..+. +....+.|.||+||+++++|++||+++.|+|+
T Consensus 1 lk~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~ 78 (347)
T 1f9v_A 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQ--NTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQ 78 (347)
T ss_dssp --CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGG--GTTCEEEEEESEEECTTCCHHHHHHHHHHHHG
T ss_pred CCCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCC--CCcCceEEeeCEEECCCCCHHHHHHHHHHHHH
Confidence 6899999999999987 3433333343322 122 24444331 22345889999999999999999999999999
Q ss_pred hhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhc-CCceEEEEEEEEEEEecceeeeccCCC
Q 001334 439 SVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTR-GDMIKYEVGVQMIEIYNEQVRDLLVSD 517 (1097)
Q Consensus 439 svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~-~~~~~y~V~VS~lEIYNE~V~DLL~~~ 517 (1097)
++|+|||+||||||||||||||||+|+ .+|||||++++||..+... ...+.|.|+|||+|||||+|+|||.+.
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTM~G~------~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 152 (347)
T 1f9v_A 79 SSLDGYNVCIFAYGQTGSGKTFTMLNP------GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSD 152 (347)
T ss_dssp GGGGTCCEEEEEECCTTSSHHHHHHST------TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--
T ss_pred HhcCCceeEEEEECCCCCCCcEeccCC------CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCc
Confidence 999999999999999999999999995 3699999999999987653 346899999999999999999999876
Q ss_pred CC-------CcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeecc
Q 001334 518 GS-------NRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVT 590 (1097)
Q Consensus 518 ~~-------~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~ 590 (1097)
.. ...+.+++++..+|++|.|++++.|.+.+|++.+|..|.++|++++|.||++|||||+||+|+|.+.+...
T Consensus 153 ~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 232 (347)
T 1f9v_A 153 NNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT 232 (347)
T ss_dssp -----------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--
T ss_pred cccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCC
Confidence 44 24577888776678999999999999999999999999999999999999999999999999999988777
Q ss_pred CceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCC---CCccCCCCchhhhhhhccCCCcee
Q 001334 591 GSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKS---AHIPYRNSKLTQVLQDSLGGHAKT 667 (1097)
Q Consensus 591 g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~---~hIPYRdSKLTrLLqDSLGGnSkT 667 (1097)
+....|+|+|||||||||+.++++.|+|++|+++||+||++||+||.||++++ .||||||||||+||||+||||++|
T Consensus 233 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt 312 (347)
T 1f9v_A 233 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKT 312 (347)
T ss_dssp CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEE
T ss_pred CceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccE
Confidence 88889999999999999999999999999999999999999999999999876 899999999999999999999999
Q ss_pred eEEEecCCCCCcHHHHHHHHHHHHHhccccccc
Q 001334 668 LMFVHINPEHNAIGETISTLKFAERVSSIELGA 700 (1097)
Q Consensus 668 lMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~ 700 (1097)
+|||||||+..+++||++||+||+||++|++++
T Consensus 313 ~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~ 345 (347)
T 1f9v_A 313 LMFVNISPSSSHINETLNSLRFASKVNSTRLVS 345 (347)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC-
T ss_pred EEEEEeCCccccHHHHHHHHHHHHHHhhhccCC
Confidence 999999999999999999999999999999876
No 8
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=7.1e-87 Score=749.25 Aligned_cols=332 Identities=39% Similarity=0.606 Sum_probs=270.3
Q ss_pred CCCEEEEEEeCCCCCCCCC--CCCceEEecCCCcEEEeCCCC-----CCCCCceeEeeceeeCCCCChHHHHhh-hhhhH
Q 001334 366 KGTIRVYCRVRPFLPGQSN--GQSTVDYIGENGNIMVTNPFK-----QGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLV 437 (1097)
Q Consensus 366 KGnIRV~cRVRP~~~~E~~--~~s~v~~~~~~~~i~I~~p~~-----~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV 437 (1097)
.++|||||||||+.+.|.. ...++.+.++++.+.+.+|.. ......+.|.||+||+++++|++||+. +.|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 5899999999999987643 334566666666777665432 122346889999999999999999988 59999
Q ss_pred hhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCC
Q 001334 438 RSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSD 517 (1097)
Q Consensus 438 ~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~ 517 (1097)
+++|+|||+||||||||||||||||+|++ +++|||||++++||+.+......+.|.|+|||+|||||+|+|||.+
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~- 157 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNK----EEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN- 157 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTT-
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCC----ccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccC-
Confidence 99999999999999999999999999964 6789999999999999987777899999999999999999999973
Q ss_pred CCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccC--ceee
Q 001334 518 GSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTG--SILK 595 (1097)
Q Consensus 518 ~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g--~~~~ 595 (1097)
...+.++++.. .|++|.|++++.|.|++|++++|..|.++|++++|.||+.|||||+||+|+|.+.+...+ ....
T Consensus 158 --~~~l~i~e~~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~ 234 (350)
T 2vvg_A 158 --NTKLPLKEDKT-RGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRV 234 (350)
T ss_dssp --EEEECEEEETT-TEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEE
T ss_pred --CcCceeeEcCC-CCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEE
Confidence 45788998865 789999999999999999999999999999999999999999999999999998765433 3567
Q ss_pred eeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEEEecCC
Q 001334 596 GCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINP 675 (1097)
Q Consensus 596 skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP 675 (1097)
|+|+|||||||||..++++.|+|++|+++||+||++||+||.||+++..||||||||||+||||+||||++|+|||||||
T Consensus 235 skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP 314 (350)
T 2vvg_A 235 GKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISP 314 (350)
T ss_dssp EEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECC
T ss_pred EEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcccccccccccc
Q 001334 676 EHNAIGETISTLKFAERVSSIELGAARSNK 705 (1097)
Q Consensus 676 ~~~~~~ETLsTLrFAsRak~I~~~~~~~~~ 705 (1097)
+..+++||++||+||+||+.|++.+..+..
T Consensus 315 ~~~~~~ETl~TL~fA~rak~i~n~~~~n~~ 344 (350)
T 2vvg_A 315 ASTNYDETMSTLRYADRAKQIKNKPRINED 344 (350)
T ss_dssp BGGGHHHHHHHHHHHHHHTTCBCCCCCCBS
T ss_pred ccccHHHHHHHHHHHHHHhhccccceecCC
Confidence 999999999999999999999999876654
No 9
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=3.6e-87 Score=756.45 Aligned_cols=342 Identities=42% Similarity=0.618 Sum_probs=288.6
Q ss_pred hhhhcCCCCEEEEEEeCCCCCCCCC--CCCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhh
Q 001334 360 NQVQDLKGTIRVYCRVRPFLPGQSN--GQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPL 436 (1097)
Q Consensus 360 N~lqelKGnIRV~cRVRP~~~~E~~--~~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PL 436 (1097)
+..++.+++|||||||||+...|.. ...++.+...++.+.+.+|........+.|.||+||+++++|++||+. +.|+
T Consensus 14 ~~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~pl 93 (372)
T 3b6u_A 14 LYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPL 93 (372)
T ss_dssp -------CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHH
T ss_pred CccCCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHH
Confidence 4567889999999999999887643 344566666677788877654444557899999999999999999998 5999
Q ss_pred HhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCC
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVS 516 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~ 516 (1097)
|+++|+|||+||||||||||||||||+|... .++.+|||||++++||..+.. ...+.|.|+|||+|||||+|+|||.+
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~-~~~~~Giipr~~~~lF~~i~~-~~~~~~~v~vS~~EIYnE~i~DLL~~ 171 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTMEGIRG-DPEKRGVIPNSFDHIFTHISR-SQNQQYLVRASYLEIYQEEIRDLLSK 171 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCTT-SGGGBCHHHHHHHHHHHHHHT-CSSCEEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeEecCCC-CcccCCcHHHHHHHHHHHhhh-ccCCceEEEEEEEEEeCCEEEECCCC
Confidence 9999999999999999999999999999753 346789999999999998876 34579999999999999999999976
Q ss_pred CCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeec---cCce
Q 001334 517 DGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELV---TGSI 593 (1097)
Q Consensus 517 ~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~---~g~~ 593 (1097)
+. ...+.+++++. .|++|.|++++.|.|++|++++|..|.++|++++|.||+.|||||+||+|+|...+.. ....
T Consensus 172 ~~-~~~l~i~e~~~-~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~ 249 (372)
T 3b6u_A 172 DQ-TKRLELKERPD-TGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHI 249 (372)
T ss_dssp CT-TCCBCEEEETT-TEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCE
T ss_pred CC-CCCceEEECCC-CcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcce
Confidence 53 45688998875 7899999999999999999999999999999999999999999999999999876542 2346
Q ss_pred eeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCC-CCccCCCCchhhhhhhccCCCceeeEEEe
Q 001334 594 LKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKS-AHIPYRNSKLTQVLQDSLGGHAKTLMFVH 672 (1097)
Q Consensus 594 ~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~-~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ 672 (1097)
..|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.||+++. .||||||||||+||||+||||++|+||||
T Consensus 250 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~ 329 (372)
T 3b6u_A 250 RVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVAN 329 (372)
T ss_dssp EEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEE
T ss_pred EEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEE
Confidence 78999999999999999999999999999999999999999999999754 69999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcccccccccccc
Q 001334 673 INPEHNAIGETISTLKFAERVSSIELGAARSNK 705 (1097)
Q Consensus 673 ISP~~~~~~ETLsTLrFAsRak~I~~~~~~~~~ 705 (1097)
|||+..+++||++||+||+||++|++.+..+..
T Consensus 330 vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~ 362 (372)
T 3b6u_A 330 VGPASYNVEETLTTLRYANRAKNIKNKPRVNED 362 (372)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC-
T ss_pred eCCcccCHHHHHHHHHHHHHHhhccccceecCC
Confidence 999999999999999999999999998876654
No 10
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=7.9e-87 Score=752.52 Aligned_cols=330 Identities=40% Similarity=0.585 Sum_probs=280.3
Q ss_pred cCCCCEEEEEEeCCCCCCCCCCC--CceEEecC--CCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHh
Q 001334 364 DLKGTIRVYCRVRPFLPGQSNGQ--STVDYIGE--NGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVR 438 (1097)
Q Consensus 364 elKGnIRV~cRVRP~~~~E~~~~--s~v~~~~~--~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~ 438 (1097)
..+|+|||||||||+.+.|.... .++.+... +..+.+ ..+.|.||+||+++++|++||+. +.|+|+
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~---------~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~ 78 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI---------AGKVYLFDKVFKPNASQEKVYNEAAKSIVT 78 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE---------TTEEEECSEEECTTCCHHHHHHHHTHHHHH
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE---------CCEEEeCceEecCCCCHHHHHHHhhhhHHH
Confidence 45799999999999988764332 23444332 222222 23789999999999999999998 599999
Q ss_pred hhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCC
Q 001334 439 SVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDG 518 (1097)
Q Consensus 439 svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~ 518 (1097)
++|+|||+||||||||||||||||+|+.. ....+|||||++++||..+......+.|.|+|||+|||||+|+|||.+.
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTm~G~~~-~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~- 156 (365)
T 2y65_A 79 DVLAGYNGTIFAYGQTSSGKTHTMEGVIG-DSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVS- 156 (365)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHTBSTT-CTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTT-
T ss_pred HHhCCCceEEEeecCCCCCCceEEecCCC-CcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCC-
Confidence 99999999999999999999999999653 2356899999999999999887778999999999999999999999764
Q ss_pred CCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeE
Q 001334 519 SNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCL 598 (1097)
Q Consensus 519 ~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL 598 (1097)
...+.++++.. .|++|.|++++.|.|++|++++|..|.++|++++|.||++|||||+||+|+|.+.+...+....|+|
T Consensus 157 -~~~l~i~e~~~-~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL 234 (365)
T 2y65_A 157 -KVNLSVHEDKN-RVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKL 234 (365)
T ss_dssp -CCSBCEEECSS-SCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEE
T ss_pred -cCCceEEECCC-CCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEE
Confidence 45678888764 7899999999999999999999999999999999999999999999999999998877778889999
Q ss_pred EEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhC-CCCccCCCCchhhhhhhccCCCceeeEEEecCCCC
Q 001334 599 HLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQK-SAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEH 677 (1097)
Q Consensus 599 ~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k-~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~ 677 (1097)
+|||||||||+.++++.|.|++|+++||+||++||+||.||+++ ..||||||||||+||||+||||++|+|||||||+.
T Consensus 235 ~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~ 314 (365)
T 2y65_A 235 YLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPAS 314 (365)
T ss_dssp EEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBG
T ss_pred EEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCcc
Confidence 99999999999999999999999999999999999999999986 57999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhccccccccccccc
Q 001334 678 NAIGETISTLKFAERVSSIELGAARSNKE 706 (1097)
Q Consensus 678 ~~~~ETLsTLrFAsRak~I~~~~~~~~~~ 706 (1097)
.+++||++||+||+||+.|++.+..+...
T Consensus 315 ~~~~ETl~TL~fA~rak~I~n~~~~n~~~ 343 (365)
T 2y65_A 315 FNESETKSTLDFGRRAKTVKNVVCVNEEL 343 (365)
T ss_dssp GGHHHHHHHHHHHHHHTTCEEECCCEEEC
T ss_pred CCHHHHHHHHHHHHHHhcccCcceeCCCC
Confidence 99999999999999999999988766543
No 11
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1e-86 Score=749.62 Aligned_cols=329 Identities=37% Similarity=0.599 Sum_probs=254.8
Q ss_pred hhhhhhcCCCCEEEEEEeCCCCCCCCCC--CCceEEecCCCcEEEeCCCCCC-----------------CCCceeEeece
Q 001334 358 LYNQVQDLKGTIRVYCRVRPFLPGQSNG--QSTVDYIGENGNIMVTNPFKQG-----------------KDARKMFLFNK 418 (1097)
Q Consensus 358 L~N~lqelKGnIRV~cRVRP~~~~E~~~--~s~v~~~~~~~~i~I~~p~~~g-----------------k~~~k~F~FD~ 418 (1097)
+++..+|++|+|||+|||||++..|... ..++.+. ++.+++.+|.... ....+.|.||+
T Consensus 1 ~~~~~~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~ 78 (355)
T 3lre_A 1 MSVTEEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVV--DKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDA 78 (355)
T ss_dssp -----------CEEEEEECCCCHHHHHTTCCBSEEEC--SSSEEEEC------------------------CCEEEECSE
T ss_pred CCcChhhccCCCEEEEEeCcCChHHHhcCCceEEEec--CCceEEecCCCCcceeecccccccccchhccCCCceEEece
Confidence 4678899999999999999999877433 2334433 2344555443210 12346899999
Q ss_pred eeCCCCChHHHHhh-hhhhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEE
Q 001334 419 VFAPNVSQEQIYVD-TQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYE 497 (1097)
Q Consensus 419 VF~~~atQeeVF~e-v~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~ 497 (1097)
||+++++|++||+. +.|+|+++|+|||+||||||||||||||||+|++ +++||+||++++||+.+......+.|.
T Consensus 79 vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~----~~~Giipr~~~~lf~~i~~~~~~~~~~ 154 (355)
T 3lre_A 79 VFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSA----DEPGVMYLTMLHLYKCMDEIKEEKICS 154 (355)
T ss_dssp EECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHHTTTTEEEE
T ss_pred EECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCC----CCCCeeehhhhHHHHhhhhhccCceEE
Confidence 99999999999998 4999999999999999999999999999999964 568999999999999998877778999
Q ss_pred EEEEEEEEecceeeeccCCCCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceE
Q 001334 498 VGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHS 577 (1097)
Q Consensus 498 V~VS~lEIYNE~V~DLL~~~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHa 577 (1097)
|.|||+|||||+|+|||.+. ..+.+++++. .|++|.|++++.|.|++|++++|..|.++|++++|.||+.|||||+
T Consensus 155 v~vS~~EIYnE~i~DLL~~~---~~l~ire~~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~ 230 (355)
T 3lre_A 155 TAVSYLEVYNEQIRDLLVNS---GPLAVREDTQ-KGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHA 230 (355)
T ss_dssp EEEEEEEEETTEEEESSSCC---CCBEEEECTT-SCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEE
T ss_pred EEEEEEEEECCEEEECcCCC---CCceeEEcCC-CCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcE
Confidence 99999999999999999754 4688998875 7899999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeecc---CceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhC---CCCccCCCC
Q 001334 578 VLTVHVLGRELVT---GSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQK---SAHIPYRNS 651 (1097)
Q Consensus 578 IftI~V~~~~~~~---g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k---~~hIPYRdS 651 (1097)
||+|+|.+.+... .....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+++ ..|||||||
T Consensus 231 if~i~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdS 310 (355)
T 3lre_A 231 VFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNS 310 (355)
T ss_dssp EEEEEEEEEETTSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGS
T ss_pred EEEEEEEEecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccC
Confidence 9999999876532 3456799999999999999999999999999999999999999999999874 469999999
Q ss_pred chhhhhhhccCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhccc
Q 001334 652 KLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSI 696 (1097)
Q Consensus 652 KLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I 696 (1097)
|||+||||+|||||+|+|||||||+..+++||++||+||+||++|
T Consensus 311 kLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 311 KLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp HHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999986
No 12
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=6e-87 Score=752.43 Aligned_cols=340 Identities=36% Similarity=0.567 Sum_probs=277.2
Q ss_pred hcCCCCEEEEEEeCCCCCCCCC--CCCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHhh
Q 001334 363 QDLKGTIRVYCRVRPFLPGQSN--GQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRS 439 (1097)
Q Consensus 363 qelKGnIRV~cRVRP~~~~E~~--~~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~s 439 (1097)
.+.+|+|||+|||||+...|.. ...++.+.+....+.+..+........+.|.||+||+++++|++||+. +.|+|++
T Consensus 4 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 83 (359)
T 1x88_A 4 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDE 83 (359)
T ss_dssp -----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHH
Confidence 3457999999999999876643 334566665555665543211122346789999999999999999998 5999999
Q ss_pred hcCCcceeEEeeccCCCCcceeecCCCCCc-------ccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeee
Q 001334 440 VLDGFNVCIFAYGQTGSGKTYTMSGPDLTA-------EETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRD 512 (1097)
Q Consensus 440 vLdGyNvcIfAYGQTGSGKTyTM~G~~~~~-------~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~D 512 (1097)
+|+|||+||||||||||||||||+|+.... ...+|||||++++||+.+.. ..+.|.|+|||+|||||+|+|
T Consensus 84 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~v~vS~~EIYnE~i~D 161 (359)
T 1x88_A 84 VIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFD 161 (359)
T ss_dssp HHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS--SSEEEEEEEEEEEEETTEEEE
T ss_pred HhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc--cCceEEEEEEEEEEeCceeee
Confidence 999999999999999999999999975321 12479999999999998865 458999999999999999999
Q ss_pred ccCCCCC-CcccceecccC-CCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeec-
Q 001334 513 LLVSDGS-NRRLDIRNTAQ-ANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELV- 589 (1097)
Q Consensus 513 LL~~~~~-~~~l~Ir~~~~-~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~- 589 (1097)
||.+... ...+.+++++. ..|++|.|++++.|.|++|++++|..|.++|++++|.||.+|||||+||+|+|...+..
T Consensus 162 LL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~ 241 (359)
T 1x88_A 162 LLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 241 (359)
T ss_dssp TTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECT
T ss_pred hhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccC
Confidence 9987654 35688888763 36899999999999999999999999999999999999999999999999999876542
Q ss_pred cC--ceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCcee
Q 001334 590 TG--SILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKT 667 (1097)
Q Consensus 590 ~g--~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkT 667 (1097)
.+ ....|+|+|||||||||+.++++.|+|++|+++||+||++||+||.||+++..||||||||||+||||+||||++|
T Consensus 242 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt 321 (359)
T 1x88_A 242 DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRT 321 (359)
T ss_dssp TSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSSEE
T ss_pred CCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCCCeE
Confidence 22 2467999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCcHHHHHHHHHHHHHhccccccccccc
Q 001334 668 LMFVHINPEHNAIGETISTLKFAERVSSIELGAARSN 704 (1097)
Q Consensus 668 lMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~~~~~ 704 (1097)
+|||||||+..+++||++||+||+||+.|++.|..+.
T Consensus 322 ~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 322 SIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp EEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 9999999999999999999999999999999887543
No 13
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=7e-86 Score=742.63 Aligned_cols=332 Identities=40% Similarity=0.609 Sum_probs=299.5
Q ss_pred CCCCEEEEEEeCCCCCCCCCC--CCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHhhhc
Q 001334 365 LKGTIRVYCRVRPFLPGQSNG--QSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSVL 441 (1097)
Q Consensus 365 lKGnIRV~cRVRP~~~~E~~~--~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~svL 441 (1097)
-.|+|||+|||||+...|... ..++.+. ++..+.+.. ....+.|.||+||+++++|++||+. +.|+|+++|
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~~~~~~-----~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l 77 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQ-GPDTCTVDS-----KEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDIL 77 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEEC-STTEEEECS-----TTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHT
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEc-CCCeEEEcc-----CCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHh
Confidence 469999999999998866432 3344443 334444422 2246789999999999999999987 699999999
Q ss_pred CCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCCc
Q 001334 442 DGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNR 521 (1097)
Q Consensus 442 dGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~ 521 (1097)
+|||+||||||||||||||||+|++....+.+|||||++++||..+......+.|.|+|||+|||||+|||||.+.. .
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~--~ 155 (355)
T 1goj_A 78 NGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQN--D 155 (355)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTC--C
T ss_pred CCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCcc--C
Confidence 99999999999999999999999765556778999999999999988877889999999999999999999997653 4
Q ss_pred ccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeEEEe
Q 001334 522 RLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHLV 601 (1097)
Q Consensus 522 ~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL~LV 601 (1097)
.+.++++.. .|++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|.+.+...+....|+|+||
T Consensus 156 ~l~i~e~~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lV 234 (355)
T 1goj_A 156 NLPVHEEKN-RGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLV 234 (355)
T ss_dssp SCCEEEETT-TEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred CceeEEcCC-CCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEE
Confidence 678888764 7899999999999999999999999999999999999999999999999999998887888889999999
Q ss_pred ecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhC-CCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcH
Q 001334 602 DLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQK-SAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAI 680 (1097)
Q Consensus 602 DLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k-~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~ 680 (1097)
|||||||++++++.|+|++|+.+||+||++||+||.||+++ ..||||||||||+||||+||||++|+|||||||+..++
T Consensus 235 DLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~ 314 (355)
T 1goj_A 235 DLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYND 314 (355)
T ss_dssp ECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGH
T ss_pred ECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccH
Confidence 99999999999999999999999999999999999999985 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccc
Q 001334 681 GETISTLKFAERVSSIELGAARSNK 705 (1097)
Q Consensus 681 ~ETLsTLrFAsRak~I~~~~~~~~~ 705 (1097)
+||++||+||+||+.|++.+..+..
T Consensus 315 ~ETl~TL~fA~rak~I~n~~~vn~~ 339 (355)
T 1goj_A 315 AETLSTLRFGMRAKSIKNKAKVNAE 339 (355)
T ss_dssp HHHHHHHHHHHHHHTCBCCCCCCSS
T ss_pred HHHHHHHHHHHHHhhccCCceeCCC
Confidence 9999999999999999998876553
No 14
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.6e-86 Score=748.91 Aligned_cols=337 Identities=37% Similarity=0.537 Sum_probs=256.3
Q ss_pred hhhhhcCCCCEEEEEEeCCCCCCCCCC--CCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhh
Q 001334 359 YNQVQDLKGTIRVYCRVRPFLPGQSNG--QSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQP 435 (1097)
Q Consensus 359 ~N~lqelKGnIRV~cRVRP~~~~E~~~--~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~P 435 (1097)
|-+.+..+|+|||+|||||+...|... ..++... ++..+.+.++.. ....+.|.||+||+++++|++||+. +.|
T Consensus 13 ~~~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~-~~~~~~i~~~~~--~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~p 89 (388)
T 3bfn_A 13 NLYFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGM-DSCSLEIANWRN--HQETLKYQFDAFYGERSTQQDIYAGSVQP 89 (388)
T ss_dssp -CCSSSCCCCCEEEEEECCCC--------------------------------CEEEEECSEEECTTCCHHHHHHHHTGG
T ss_pred cccccCCCCCEEEEEECCCCChhhhccCCCceEEec-CCCeEEEecCCC--CCCeeEEEcceEecCCCCHhHHHHHHHHH
Confidence 445678899999999999999887543 2333332 233444444321 1235789999999999999999987 699
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhc---CCceEEEEEEEEEEEecceeee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTR---GDMIKYEVGVQMIEIYNEQVRD 512 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~---~~~~~y~V~VS~lEIYNE~V~D 512 (1097)
+|+++|+|||+||||||||||||||||+|++ +++|||||++++||+.+... ...+.|.|+|||+|||||+|+|
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~----~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~D 165 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHTMLGSP----EQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLD 165 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEE
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeEeecCc----cccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeee
Confidence 9999999999999999999999999999964 57899999999999987653 4568999999999999999999
Q ss_pred ccCCCCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeecc-C
Q 001334 513 LLVSDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVT-G 591 (1097)
Q Consensus 513 LL~~~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~-g 591 (1097)
||.+. ...+.|+++.. +|++|.|++++.|.|++|++++|..|.++|++++|.||+.|||||+||+|+|.+.+... .
T Consensus 166 LL~~~--~~~l~ired~~-~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~ 242 (388)
T 3bfn_A 166 LLDPA--SGDLVIREDCR-GNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPF 242 (388)
T ss_dssp SSSCS--SCBCCCEECTT-SCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTC
T ss_pred hhccC--CCCceEEEcCC-CCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCC
Confidence 99765 34678888865 68999999999999999999999999999999999999999999999999999876543 3
Q ss_pred ceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEEE
Q 001334 592 SILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFV 671 (1097)
Q Consensus 592 ~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa 671 (1097)
....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+++..||||||||||+||||+||||++|+|||
T Consensus 243 ~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa 322 (388)
T 3bfn_A 243 RQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIA 322 (388)
T ss_dssp CEEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEE
T ss_pred ceeEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcHHHHHHHHHHHHHhcccccccccccc
Q 001334 672 HINPEHNAIGETISTLKFAERVSSIELGAARSNK 705 (1097)
Q Consensus 672 ~ISP~~~~~~ETLsTLrFAsRak~I~~~~~~~~~ 705 (1097)
||||+..+++||++||+||+||+.|++.+..+..
T Consensus 323 ~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~ 356 (388)
T 3bfn_A 323 NIAPERRFYLDTVSALNFAARSKEVINRPFTNES 356 (388)
T ss_dssp EECCSGGGHHHHHHHHHHHCSEEEEC--------
T ss_pred EECCccccHHHHHHHHHHHHHHhhCcCcCcccCC
Confidence 9999999999999999999999999998876544
No 15
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=2.5e-86 Score=738.71 Aligned_cols=319 Identities=39% Similarity=0.598 Sum_probs=289.8
Q ss_pred cCCCCEEEEEEeCCCCCCCCCC--CCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHhhh
Q 001334 364 DLKGTIRVYCRVRPFLPGQSNG--QSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSV 440 (1097)
Q Consensus 364 elKGnIRV~cRVRP~~~~E~~~--~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~sv 440 (1097)
..+|||||+|||||+.+.|... ..++.+. .+..+.+ + .+.|.||+||+++++|++||+. +.|+|+++
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~-~~~~~~~-~--------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~ 73 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQ-GEDTVVI-A--------SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDV 73 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEE-TTTEEEE-T--------TEEEECSEEECTTCCHHHHHHHHTHHHHHHH
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEEC-CCCeEEE-C--------CEEEECCeEeCCCCCHHHHHHHHhhhhHHHH
Confidence 4589999999999999876432 2334443 3334443 1 3689999999999999999998 59999999
Q ss_pred cCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCC
Q 001334 441 LDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSN 520 (1097)
Q Consensus 441 LdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~ 520 (1097)
|+|||+||||||||||||||||+|+... ++.+|||||++++||+.+......+.|.|+|||+|||||+|+|||.+. .
T Consensus 74 l~G~n~tifAYGqTGSGKTyTm~G~~~~-~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~--~ 150 (325)
T 1bg2_A 74 LEGYNGTIFAYGQTSSGKTHTMEGKLHD-PEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVS--K 150 (325)
T ss_dssp HTTCCEEEEEECSTTSSHHHHHTBSTTC-TTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTT--C
T ss_pred hCCCeEEEEEECCCCCCCceEecccCCC-cccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCC--C
Confidence 9999999999999999999999997532 356799999999999999877778999999999999999999999764 4
Q ss_pred cccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeEEE
Q 001334 521 RRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCLHL 600 (1097)
Q Consensus 521 ~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL~L 600 (1097)
..+.++++.. .|++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|.+.+...+....|+|+|
T Consensus 151 ~~l~i~e~~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~l 229 (325)
T 1bg2_A 151 TNLSVHEDKN-RVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYL 229 (325)
T ss_dssp CSBCEEECTT-SCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEE
T ss_pred CCceEEECCC-CCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEE
Confidence 5678888764 789999999999999999999999999999999999999999999999999999887777788999999
Q ss_pred eecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcH
Q 001334 601 VDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAI 680 (1097)
Q Consensus 601 VDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~ 680 (1097)
||||||||..++++.|.|++|+.+||+||++||+||.||+++..||||||||||+||||+||||++|+|||||||+..++
T Consensus 230 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~ 309 (325)
T 1bg2_A 230 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNE 309 (325)
T ss_dssp EECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGH
T ss_pred EECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 001334 681 GETISTLKFAERVSSI 696 (1097)
Q Consensus 681 ~ETLsTLrFAsRak~I 696 (1097)
+||++||+||+||++|
T Consensus 310 ~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 310 SETKSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999999986
No 16
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.5e-85 Score=736.69 Aligned_cols=327 Identities=38% Similarity=0.571 Sum_probs=283.6
Q ss_pred CCCEEEEEEeCCCCCCCCCC--CCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhhh-hhhHhhhcC
Q 001334 366 KGTIRVYCRVRPFLPGQSNG--QSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVDT-QPLVRSVLD 442 (1097)
Q Consensus 366 KGnIRV~cRVRP~~~~E~~~--~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~ev-~PLV~svLd 442 (1097)
.|+|+|+|||||+...|... ...+.+..++..+... +..+.|.||+||+++++|++||+.+ .|+|+++|+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~-------~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~ 75 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV-------DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQ 75 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET-------TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHT
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC-------CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 69999999999999887643 2334444333333321 1357899999999999999999985 899999999
Q ss_pred CcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCCcc
Q 001334 443 GFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRR 522 (1097)
Q Consensus 443 GyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~ 522 (1097)
|||+||||||||||||||||+|++ +++|||||++++||+.+.... .+.|.|+|||+|||||+|+|||.+......
T Consensus 76 G~n~tifAYGqTGSGKTyTM~G~~----~~~Giipr~~~~lF~~i~~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 150 (349)
T 1t5c_A 76 GYNGTIFAYGQTASGKTYTMMGSE----DHLGVIPRAIHDIFQKIKKFP-DREFLLRVSYMEIYNETITDLLCGTQKMKP 150 (349)
T ss_dssp TCCEEEEEEESTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHGGGCT-TEEEEEEEEEEEEETTEEEESSSSSCTTCC
T ss_pred CCccceeeecCCCCCCCeEEecCC----CCCchHHHHHHHHHHHHHhCc-CCcEEEEEEEEEEeCCEEEEccCCCCCCCC
Confidence 999999999999999999999964 568999999999999887654 469999999999999999999988776778
Q ss_pred cceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeecc-----Cceeeee
Q 001334 523 LDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVT-----GSILKGC 597 (1097)
Q Consensus 523 l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~-----g~~~~sk 597 (1097)
+.|+++.. .|++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|.+.+... +....|+
T Consensus 151 l~i~ed~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~sk 229 (349)
T 1t5c_A 151 LIIREDVN-RNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSH 229 (349)
T ss_dssp EEEEETTT-TEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEE
T ss_pred ceEEECCC-CCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEE
Confidence 89998875 68999999999999999999999999999999999999999999999999998876532 3467899
Q ss_pred EEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCC--CCccCCCCchhhhhhhccCCCceeeEEEecCC
Q 001334 598 LHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKS--AHIPYRNSKLTQVLQDSLGGHAKTLMFVHINP 675 (1097)
Q Consensus 598 L~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~--~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP 675 (1097)
|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.++ .||||||||||+||||+||||++|+|||||||
T Consensus 230 L~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP 309 (349)
T 1t5c_A 230 LNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITP 309 (349)
T ss_dssp EEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECT
T ss_pred EEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999865 69999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhccccccccccccch
Q 001334 676 EHNAIGETISTLKFAERVSSIELGAARSNKES 707 (1097)
Q Consensus 676 ~~~~~~ETLsTLrFAsRak~I~~~~~~~~~~~ 707 (1097)
. +++||++||+||+||+.|++.+..+....
T Consensus 310 ~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~ 339 (349)
T 1t5c_A 310 V--SFDETLTALQFASTAKYMKNTPYVNEVST 339 (349)
T ss_dssp T--CSHHHHHHHHHHHHHTTCCCCCCCCEEC-
T ss_pred C--CHHHHHHHHHHHHHHhhcccCceeccCCC
Confidence 7 58999999999999999999987765443
No 17
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=1.9e-85 Score=757.02 Aligned_cols=337 Identities=39% Similarity=0.590 Sum_probs=274.8
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCCC--CCCceEEecCCCcEEEeCCCCCC-----------CCCceeEeeceeeCC-----
Q 001334 361 QVQDLKGTIRVYCRVRPFLPGQSN--GQSTVDYIGENGNIMVTNPFKQG-----------KDARKMFLFNKVFAP----- 422 (1097)
Q Consensus 361 ~lqelKGnIRV~cRVRP~~~~E~~--~~s~v~~~~~~~~i~I~~p~~~g-----------k~~~k~F~FD~VF~~----- 422 (1097)
...+++|+|||||||||+++.|.. ...++.+......+.+..|.... ....+.|.||+||++
T Consensus 32 ~~~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~ 111 (443)
T 2owm_A 32 VSKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTED 111 (443)
T ss_dssp --CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTS
T ss_pred ccCCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCC
Confidence 357899999999999999987643 23344444444455555442110 113578999999976
Q ss_pred --CCChHHHHhhh-hhhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhc---CCceEE
Q 001334 423 --NVSQEQIYVDT-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTR---GDMIKY 496 (1097)
Q Consensus 423 --~atQeeVF~ev-~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~---~~~~~y 496 (1097)
.++|++||+.+ .|+|+++|+|||+||||||||||||||||+|++ +++|||||++++||..+... ...+.|
T Consensus 112 ~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~----~~~GIipr~~~~lF~~i~~~~~~~~~~~~ 187 (443)
T 2owm_A 112 EHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTP----DQPGLIPRTCEDLFQRIASAQDETPNISY 187 (443)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCT----TSCCHHHHHHHHHHHHHHHTTTTSTTCEE
T ss_pred ccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCC----CCCchHHHHHHHHHHHHHhhhcccCCceE
Confidence 48999999985 899999999999999999999999999999964 56899999999999988764 346899
Q ss_pred EEEEEEEEEecceeeeccCCCC---CCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCC
Q 001334 497 EVGVQMIEIYNEQVRDLLVSDG---SNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSS 573 (1097)
Q Consensus 497 ~V~VS~lEIYNE~V~DLL~~~~---~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SS 573 (1097)
.|+|||+|||||+|||||.+.. ....+.|++++. .|++|.|++++.|.|++|++++|..|.++|++++|.||+.||
T Consensus 188 ~V~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~-~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SS 266 (443)
T 2owm_A 188 NVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPT-EGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSS 266 (443)
T ss_dssp EEEEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETT-TEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCT
T ss_pred EEEEEEEEEECCEeeEccCccccCCcccccceeECCC-CCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccC
Confidence 9999999999999999998732 234688999875 789999999999999999999999999999999999999999
Q ss_pred CceEEEEEEEEeeee----ccCceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCC------
Q 001334 574 RSHSVLTVHVLGREL----VTGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKS------ 643 (1097)
Q Consensus 574 RSHaIftI~V~~~~~----~~g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~------ 643 (1097)
|||+||+|+|.+... .......|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.||+++.
T Consensus 267 RSH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~ 346 (443)
T 2owm_A 267 RSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRP 346 (443)
T ss_dssp TEEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC--------
T ss_pred CCeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhccccccccc
Confidence 999999999987542 1234567999999999999999999999999999999999999999999998643
Q ss_pred ----------------CCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhccccccccccc
Q 001334 644 ----------------AHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSN 704 (1097)
Q Consensus 644 ----------------~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~~~~~ 704 (1097)
.||||||||||+||||+||||++|+|||||||+ +++||++||+||+||+.|++.+..+.
T Consensus 347 ~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~ 421 (443)
T 2owm_A 347 SSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQ 421 (443)
T ss_dssp -----------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCC
T ss_pred ccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecc
Confidence 389999999999999999999999999999997 59999999999999999999887765
No 18
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=2.9e-85 Score=740.40 Aligned_cols=330 Identities=39% Similarity=0.616 Sum_probs=275.5
Q ss_pred CCCEEEEEEeCCCCCCCCCCC--CceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCC--------CChHHHHhhh-h
Q 001334 366 KGTIRVYCRVRPFLPGQSNGQ--STVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPN--------VSQEQIYVDT-Q 434 (1097)
Q Consensus 366 KGnIRV~cRVRP~~~~E~~~~--s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~--------atQeeVF~ev-~ 434 (1097)
.++|||+|||||+...|.... .++.+ +++.+.+.+|.. .....+.|.||+||++. ++|++||+.+ .
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~--~~~~~~i~~~~~-~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~ 79 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQM--SGSTTTIVNPKQ-PKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGE 79 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEE--ETTEEEECCTTC-TTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEE--CCCcEEEeccCC-CCCCceEEecceEeecCccccccccCcHHHHHHHHHH
Confidence 479999999999988764322 23333 334566666532 23346899999999987 8999999985 9
Q ss_pred hhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhc-CCceEEEEEEEEEEEecceeeec
Q 001334 435 PLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTR-GDMIKYEVGVQMIEIYNEQVRDL 513 (1097)
Q Consensus 435 PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~-~~~~~y~V~VS~lEIYNE~V~DL 513 (1097)
|+|+++|+|||+||||||||||||||||+|+. ..+++|||||++++||..+... ...+.|.|+|||+|||||+|+||
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~--~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DL 157 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ--EKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDL 157 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHTBCS--GGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEET
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEeeCCC--ccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEc
Confidence 99999999999999999999999999999974 2357899999999999988765 35689999999999999999999
Q ss_pred cCCCCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccC--
Q 001334 514 LVSDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTG-- 591 (1097)
Q Consensus 514 L~~~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g-- 591 (1097)
|.+.. ...+.+++++. .|++|.|++++.|.|++|++++|..|.++|++++|.||+.|||||+||+|+|.+......
T Consensus 158 L~~~~-~~~l~ire~~~-~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 235 (366)
T 2zfi_A 158 LNPKN-KGNLRVREHPL-LGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 235 (366)
T ss_dssp TCTTT-CSCBCEEEETT-TEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTT
T ss_pred ccccc-CCCceEEEcCC-CCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCC
Confidence 98653 34688998875 789999999999999999999999999999999999999999999999999987664332
Q ss_pred --ceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhh------------CCCCccCCCCchhhhh
Q 001334 592 --SILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQ------------KSAHIPYRNSKLTQVL 657 (1097)
Q Consensus 592 --~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~------------k~~hIPYRdSKLTrLL 657 (1097)
....|+|+|||||||||++++++.|+|++|+.+||+||++||+||.||++ +..||||||||||+||
T Consensus 236 ~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lL 315 (366)
T 2zfi_A 236 ITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLL 315 (366)
T ss_dssp CEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHT
T ss_pred ccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHH
Confidence 24579999999999999999999999999999999999999999999986 3579999999999999
Q ss_pred hhccCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhccccccccc
Q 001334 658 QDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAAR 702 (1097)
Q Consensus 658 qDSLGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~~~ 702 (1097)
||+||||++|+|||||||+..+++||++||+||+||++|++.+..
T Consensus 316 qdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~ 360 (366)
T 2zfi_A 316 RENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSV 360 (366)
T ss_dssp GGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC--------
T ss_pred HHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCC
Confidence 999999999999999999999999999999999999999987754
No 19
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1.7e-84 Score=729.02 Aligned_cols=319 Identities=41% Similarity=0.664 Sum_probs=263.3
Q ss_pred CCCEEEEEEeCCCCCCCC--CCCCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHhhhcC
Q 001334 366 KGTIRVYCRVRPFLPGQS--NGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSVLD 442 (1097)
Q Consensus 366 KGnIRV~cRVRP~~~~E~--~~~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~svLd 442 (1097)
.++|||+|||||+++.|. ....++.+.+....+.+. ..+.|.||+||+++++|++||+. +.|+|+++|+
T Consensus 10 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~--------~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~ 81 (344)
T 4a14_A 10 EAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG--------RDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFE 81 (344)
T ss_dssp CCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET--------TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT
T ss_pred ccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec--------ccceEEEEEEEecCcchhHHHHHHHHHHHHHHHh
Confidence 689999999999998764 334566665554444431 24789999999999999999998 6999999999
Q ss_pred CcceeEEeeccCCCCcceeecCCCCC--cccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCCCC
Q 001334 443 GFNVCIFAYGQTGSGKTYTMSGPDLT--AEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDGSN 520 (1097)
Q Consensus 443 GyNvcIfAYGQTGSGKTyTM~G~~~~--~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~ 520 (1097)
|||+||||||||||||||||+|.... ..+++|||||++++||+.++.. ..+.|.|+|||+|||||+|+|||.+....
T Consensus 82 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 160 (344)
T 4a14_A 82 GFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEN-DLLDCLVHVSYLEVYKEEFRDLLEVGTAS 160 (344)
T ss_dssp TCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHC-TTSEEEEEEEEEEEETTEEEETTSSCCCG
T ss_pred hcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccc-cceeeEEEEehhhhhHHHHHHHHHhcccc
Confidence 99999999999999999999996422 2467899999999999988765 45799999999999999999999887777
Q ss_pred cccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeec--------cCc
Q 001334 521 RRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELV--------TGS 592 (1097)
Q Consensus 521 ~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~--------~g~ 592 (1097)
..+.++++.. +|++|.|++++.|.|++|++++|..|.++|++++|.||+.|||||+||+|+|.+.+.. .+.
T Consensus 161 ~~l~i~e~~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~ 239 (344)
T 4a14_A 161 RDIQLREDER-GNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQ 239 (344)
T ss_dssp GGCEEEECTT-SCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------C
T ss_pred ccceeeeccC-CCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccc
Confidence 8899999875 7899999999999999999999999999999999999999999999999999877532 245
Q ss_pred eeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhC---CCCccCCCCchhhhhhhccCCCceeeE
Q 001334 593 ILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQK---SAHIPYRNSKLTQVLQDSLGGHAKTLM 669 (1097)
Q Consensus 593 ~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k---~~hIPYRdSKLTrLLqDSLGGnSkTlM 669 (1097)
...|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.||+++ ..||||||||||+||||+||||++|+|
T Consensus 240 ~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~m 319 (344)
T 4a14_A 240 LLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVM 319 (344)
T ss_dssp EEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEE
T ss_pred eeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEE
Confidence 67899999999999999999999999999999999999999999999863 469999999999999999999999999
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHhc
Q 001334 670 FVHINPEHNAIGETISTLKFAERVS 694 (1097)
Q Consensus 670 Ia~ISP~~~~~~ETLsTLrFAsRak 694 (1097)
||||||+..+++||++||+||+|||
T Consensus 320 I~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 320 IACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred EEEeCCCccchhHHhhhhhhhhhcC
Confidence 9999999999999999999999986
No 20
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-84 Score=733.53 Aligned_cols=325 Identities=33% Similarity=0.502 Sum_probs=259.3
Q ss_pred cCCCCEEEEEEeCCCCCCCCCCCCceEEecCCCcEEEeCCCC------CCCCCceeEeeceeeCCCCChHHHHhhh-hhh
Q 001334 364 DLKGTIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFK------QGKDARKMFLFNKVFAPNVSQEQIYVDT-QPL 436 (1097)
Q Consensus 364 elKGnIRV~cRVRP~~~~E~~~~s~v~~~~~~~~i~I~~p~~------~gk~~~k~F~FD~VF~~~atQeeVF~ev-~PL 436 (1097)
+.+|+|||||||||+...+. ..+.+..+...+.+..+.. ......+.|.||+||+ +++|++||+.+ +|+
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~pl 96 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAH---EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDV 96 (359)
T ss_dssp ---CCEEEEEEECCCSSCCT---TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHH
T ss_pred CCCCCEEEEEEcCCCCcccc---cceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHH
Confidence 56899999999999876543 3444444444555544321 1233457899999997 58999999985 999
Q ss_pred HhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCC
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVS 516 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~ 516 (1097)
|+++|+|||+||||||||||||||||+|+..+ .+++|||||++++||+.+.... .+.|.|+|||+|||||+|+|||++
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~-~~~~Giipra~~~lF~~~~~~~-~~~~~v~vS~~EIYnE~i~DLL~~ 174 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTMMGATEN-YKHRGILPRALQQVFRMIEERP-THAITVRVSYLEIYNESLFDLLST 174 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCSSC-GGGBCHHHHHHHHHHHHHHTCT-TSCEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEeCCccCC-ccchhhHHHHHHHHHHHhhcCC-CCcEEEEEEEEEEecccccccccc
Confidence 99999999999999999999999999997533 3578999999999999887654 468999999999999999999986
Q ss_pred CCC----CcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeee--cc
Q 001334 517 DGS----NRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGREL--VT 590 (1097)
Q Consensus 517 ~~~----~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~--~~ 590 (1097)
... ...+.++++. .|++|.|++++.|.+.+|++++|..|.++|++++|.||..|||||+||+|+|..... ..
T Consensus 175 ~~~~~~~~~~~~~~~~~--~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~ 252 (359)
T 3nwn_A 175 LPYVGPSVTPMTIVENP--QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSE 252 (359)
T ss_dssp STTSCTTTSCCEEEEET--TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC------
T ss_pred ccccccccccceEEecC--CceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccC
Confidence 432 2334555554 689999999999999999999999999999999999999999999999999976543 23
Q ss_pred CceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhh-CCCCccCCCCchhhhhhhccCCCceeeE
Q 001334 591 GSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQ-KSAHIPYRNSKLTQVLQDSLGGHAKTLM 669 (1097)
Q Consensus 591 g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~-k~~hIPYRdSKLTrLLqDSLGGnSkTlM 669 (1097)
+....|+|+|||||||||+.++++.|+|++|+++||+||++||+||.||++ +..||||||||||+||||+|||||+|+|
T Consensus 253 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~m 332 (359)
T 3nwn_A 253 EKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVL 332 (359)
T ss_dssp -CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEE
T ss_pred cccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEE
Confidence 446789999999999999999999999999999999999999999999986 4579999999999999999999999999
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHhccc
Q 001334 670 FVHINPEHNAIGETISTLKFAERVSSI 696 (1097)
Q Consensus 670 Ia~ISP~~~~~~ETLsTLrFAsRak~I 696 (1097)
||||||+..+++||++||+||+|||.|
T Consensus 333 I~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 333 VTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999986
No 21
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=5.8e-85 Score=745.27 Aligned_cols=345 Identities=32% Similarity=0.459 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCEEEEEEeCCCCCCCCCC--CCceEEecCCCcEEEeCCCCCCC----CCceeEeece
Q 001334 345 SSSYQKVLEENRVLYNQVQDLKGTIRVYCRVRPFLPGQSNG--QSTVDYIGENGNIMVTNPFKQGK----DARKMFLFNK 418 (1097)
Q Consensus 345 ~~~~~~~l~err~L~N~lqelKGnIRV~cRVRP~~~~E~~~--~s~v~~~~~~~~i~I~~p~~~gk----~~~k~F~FD~ 418 (1097)
-..|+..+..|+..+|+..+ +++|+|||||||++..|... ..++.+ .+++.+++..|..... ...+.|.||+
T Consensus 50 i~~~r~~~~~~~~~~~~~~~-~~~I~V~vRvRPl~~~E~~~~~~~~v~~-~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~ 127 (410)
T 1v8k_A 50 IKEFRVTMECSPLTVTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISV-PSKCLLLVHEPKLKVDLTKYLENQAFCFDF 127 (410)
T ss_dssp HHHHHHHHTCCTTTTTCTTS-CCCEEEEEEECCCCHHHHHTTCCBCEEC-CSSSEEEEEEEEECTTCCEEEEEEEEECSE
T ss_pred HHHHHHhhccCCCccCCcCC-CCCeEEEEEeCCCChhHhhcCCccEEEE-CCCCEEEEecCcccccccccccceEEeeeE
Confidence 34677777778888988877 89999999999999876432 233433 3444555544321111 1246899999
Q ss_pred eeCCCCChHHHHhh-hhhhHhhhcCCcceeEEeeccCCCCcceeecCCCC--CcccccCchHHHHHHHHHHhhhc-CCce
Q 001334 419 VFAPNVSQEQIYVD-TQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDL--TAEETWGVNYRALRDLFQISNTR-GDMI 494 (1097)
Q Consensus 419 VF~~~atQeeVF~e-v~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~--~~~e~~GIipRal~~LF~~~~~~-~~~~ 494 (1097)
||+++++|++||+. +.|+|+++|+|||+||||||||||||||||+|+.. .....+||+||++++||..+... ...+
T Consensus 128 VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~ 207 (410)
T 1v8k_A 128 AFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNL 207 (410)
T ss_dssp EECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTT
T ss_pred EEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCc
Confidence 99999999999998 59999999999999999999999999999999532 12357899999999999987643 2356
Q ss_pred EEEEEEEEEEEecceeeeccCCCCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCC
Q 001334 495 KYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSR 574 (1097)
Q Consensus 495 ~y~V~VS~lEIYNE~V~DLL~~~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSR 574 (1097)
.|.|+|||+|||||+|+|||.+. ..+.++++.. .|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||
T Consensus 208 ~~~V~vS~lEIYnE~i~DLL~~~---~~l~i~ed~~-~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSR 283 (410)
T 1v8k_A 208 NLEVYVTFFEIYNGKVFDLLNKK---AKLRVLEDSR-QQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSR 283 (410)
T ss_dssp CCEEEEEEEEEETTEEEETTTTT---EEEEEEECSS-CCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCS
T ss_pred cEEEEEEEEEeeCCEEEECCCCC---CCceEEECCC-CCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCC
Confidence 89999999999999999999753 5688888865 7899999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEeeeeccCceeeeeEEEeecCCCcccccch-hhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCch
Q 001334 575 SHSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKSE-AVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKL 653 (1097)
Q Consensus 575 SHaIftI~V~~~~~~~g~~~~skL~LVDLAGSER~~ks~-a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKL 653 (1097)
||+||+|+|.+. ....|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.||+++..|||||||||
T Consensus 284 SH~Ifti~v~~~-----~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKL 358 (410)
T 1v8k_A 284 SHACFQILLRTK-----GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKL 358 (410)
T ss_dssp SEEEEEEEEESS-----SSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHH
T ss_pred ceEEEEEEEEeC-----CcceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchh
Confidence 999999999764 2468999999999999998876 5678899999999999999999999999999999999999
Q ss_pred hhhhhhc-cCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhccccccc
Q 001334 654 TQVLQDS-LGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGA 700 (1097)
Q Consensus 654 TrLLqDS-LGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~ 700 (1097)
|+||||| |||||+|+|||||||+..+++||++||+||+||+.|.-.+
T Consensus 359 TrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~ 406 (410)
T 1v8k_A 359 TQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHH 406 (410)
T ss_dssp HHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCC
Confidence 9999999 6999999999999999999999999999999999996443
No 22
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=7.2e-85 Score=738.59 Aligned_cols=338 Identities=37% Similarity=0.609 Sum_probs=274.7
Q ss_pred hhcCCCCEEEEEEeCCCCCCCCC--CCCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHh
Q 001334 362 VQDLKGTIRVYCRVRPFLPGQSN--GQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVR 438 (1097)
Q Consensus 362 lqelKGnIRV~cRVRP~~~~E~~--~~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~ 438 (1097)
-.+.+++|||||||||+...|.. ...++.+.. +..+.+..+. .....+.|.||+||+++++|++||+. +.|+|+
T Consensus 18 ~~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~~~~~~--~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~ 94 (373)
T 2wbe_C 18 QKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVG-PREVVTRHTL--DSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIE 94 (373)
T ss_dssp CCCCCEECEEEEEECCCCHHHHHHTCCBCEEEET-TTEEEESSSS--SSTTCEEEECSEEECTTCCHHHHHHHHHHHHHH
T ss_pred CcCCCCCeEEEEEcCCCChhhhccCCCceEEEcC-CCeEEEecCC--CCCCceEEeccEEeccccchhHHHHHHHHHHHH
Confidence 34668999999999999887642 334555543 3344443322 22346889999999999999999988 699999
Q ss_pred hhcCCcceeEEeeccCCCCcceeecCCCCC-------cccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceee
Q 001334 439 SVLDGFNVCIFAYGQTGSGKTYTMSGPDLT-------AEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVR 511 (1097)
Q Consensus 439 svLdGyNvcIfAYGQTGSGKTyTM~G~~~~-------~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~ 511 (1097)
++|+|||+||||||||||||||||+|+... ...++|||||++++||+.+... .+.|.|+|||+|||||+|+
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~--~~~~~v~vS~~EIYnE~i~ 172 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM--EVEYTMRISYLELYNEELC 172 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC--CSCEEEEEEEEEEETTEEE
T ss_pred HHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc--CceEEEEEEEEEEeCCeEE
Confidence 999999999999999999999999997531 2357899999999999988764 3589999999999999999
Q ss_pred eccCCCCCCcccceecccC-CCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeec-
Q 001334 512 DLLVSDGSNRRLDIRNTAQ-ANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELV- 589 (1097)
Q Consensus 512 DLL~~~~~~~~l~Ir~~~~-~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~- 589 (1097)
|||.++. ...+.++++.. .++++|.|++++.|.|++|++++|..|.++|++++|.||+.|||||+||+|+|...+..
T Consensus 173 DLL~~~~-~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 251 (373)
T 2wbe_C 173 DLLSTDD-TTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGI 251 (373)
T ss_dssp ESSCTTS-CSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCT
T ss_pred ECCCCCC-CCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCC
Confidence 9998653 34566776643 35699999999999999999999999999999999999999999999999999875421
Q ss_pred c--CceeeeeEEEeecCCCcccccchhh-hhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCce
Q 001334 590 T--GSILKGCLHLVDLAGSERVDKSEAV-GERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAK 666 (1097)
Q Consensus 590 ~--g~~~~skL~LVDLAGSER~~ks~a~-G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSk 666 (1097)
. .....|+|+|||||||||+.++++. |.|++|+.+||+||++||+||.||+++..||||||||||+||||+||||++
T Consensus 252 ~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnsk 331 (373)
T 2wbe_C 252 EGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTK 331 (373)
T ss_dssp TTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSSE
T ss_pred CCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCce
Confidence 1 2346799999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCCCCcHHHHHHHHHHHHHhcccccccccccc
Q 001334 667 TLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNK 705 (1097)
Q Consensus 667 TlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~~~~~~ 705 (1097)
|+|||||||+..+++||++||+||+||+.|++.+..+..
T Consensus 332 t~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~ 370 (373)
T 2wbe_C 332 TSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQK 370 (373)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEE
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceeccc
Confidence 999999999999999999999999999999998876543
No 23
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=7.8e-85 Score=739.93 Aligned_cols=343 Identities=32% Similarity=0.466 Sum_probs=268.9
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCEEEEEEeCCCCCCCCCCC--CceEEecCCCcEEEeCCCCCCC----CCceeEeecee
Q 001334 346 SSYQKVLEENRVLYNQVQDLKGTIRVYCRVRPFLPGQSNGQ--STVDYIGENGNIMVTNPFKQGK----DARKMFLFNKV 419 (1097)
Q Consensus 346 ~~~~~~l~err~L~N~lqelKGnIRV~cRVRP~~~~E~~~~--s~v~~~~~~~~i~I~~p~~~gk----~~~k~F~FD~V 419 (1097)
..|+..+..|+.++|+..+ +++|||+|||||++..|.... .++.+ .+++.+++..|..... ...+.|.||+|
T Consensus 31 ~~~r~~~~~~~~~~~~~~~-~~~I~V~vRvRP~~~~E~~~~~~~~v~~-~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~V 108 (387)
T 2heh_A 31 KEFRATLECHPLTMTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISI-PSKCLLLVHEPKLKVDLTKYLENQAFCFDFA 108 (387)
T ss_dssp HHHHHHCCCBCCCTTSCCC-CCSEEEEEEECCCCHHHHHTTCCBCEEC-CBSSEEEEEEEEECTTCCEEEEEEEEECSEE
T ss_pred HHHHHhhccCCCccCCCCC-CCCeEEEEECCCCChHHhccCCceEEEE-CCCCEEEEeCCCccccccccccccEEeeeEE
Confidence 4566667778889998887 899999999999988764332 33433 3444555544321111 12468999999
Q ss_pred eCCCCChHHHHhh-hhhhHhhhcCCcceeEEeeccCCCCcceeecCCCCC--cccccCchHHHHHHHHHHhhhcC-CceE
Q 001334 420 FAPNVSQEQIYVD-TQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLT--AEETWGVNYRALRDLFQISNTRG-DMIK 495 (1097)
Q Consensus 420 F~~~atQeeVF~e-v~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~--~~e~~GIipRal~~LF~~~~~~~-~~~~ 495 (1097)
|+++++|++||+. +.|+|+++|+|||+||||||||||||||||+|+... ....+||+||++++||..+.... ..+.
T Consensus 109 F~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~ 188 (387)
T 2heh_A 109 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLG 188 (387)
T ss_dssp ECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTT
T ss_pred EecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCce
Confidence 9999999999998 599999999999999999999999999999996321 23568999999999999876432 3468
Q ss_pred EEEEEEEEEEecceeeeccCCCCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCc
Q 001334 496 YEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRS 575 (1097)
Q Consensus 496 y~V~VS~lEIYNE~V~DLL~~~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRS 575 (1097)
|.|+|||+|||||+|+|||.+. ..+.++++.. .|++|.|++++.|.|++|++++|..|.++|++++|.||+.||||
T Consensus 189 ~~V~vS~~EIYnE~v~DLL~~~---~~l~i~ed~~-~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRS 264 (387)
T 2heh_A 189 LEVYVTFFEIYNGKLFDLLNKK---AKLRVLEDGK-QQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRS 264 (387)
T ss_dssp CEEEEEEEEEETTEEEETTTTT---EECEEEECTT-CCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGS
T ss_pred EEEEEEEEEecCCeEEECCCCC---ccceEEEcCC-CCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccc
Confidence 9999999999999999999753 4688888865 78999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeeeeccCceeeeeEEEeecCCCcccccch-hhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchh
Q 001334 576 HSVLTVHVLGRELVTGSILKGCLHLVDLAGSERVDKSE-AVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLT 654 (1097)
Q Consensus 576 HaIftI~V~~~~~~~g~~~~skL~LVDLAGSER~~ks~-a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLT 654 (1097)
|+||+|+|.+. ....|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.||+++..||||||||||
T Consensus 265 H~Ifti~v~~~-----~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLT 339 (387)
T 2heh_A 265 HACFQIILRAK-----GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLT 339 (387)
T ss_dssp EEEEEEEEESS-----SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHH
T ss_pred eEEEEEEEEEC-----CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHH
Confidence 99999999764 2468999999999999998876 56788999999999999999999999999999999999999
Q ss_pred hhhhhc-cCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhcccccc
Q 001334 655 QVLQDS-LGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELG 699 (1097)
Q Consensus 655 rLLqDS-LGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~ 699 (1097)
+||||+ |||||+|+|||||||+..+++||++||+||+||++|+..
T Consensus 340 rlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 340 QVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp HHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred HHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 999999 699999999999999999999999999999999999754
No 24
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=4.3e-84 Score=728.02 Aligned_cols=323 Identities=39% Similarity=0.614 Sum_probs=253.7
Q ss_pred CCEEEEEEeCCCCCCCCCCC-CceEEecCCCcEEEeCCCC-----CCCCCceeEeeceee--------CCCCChHHHHhh
Q 001334 367 GTIRVYCRVRPFLPGQSNGQ-STVDYIGENGNIMVTNPFK-----QGKDARKMFLFNKVF--------APNVSQEQIYVD 432 (1097)
Q Consensus 367 GnIRV~cRVRP~~~~E~~~~-s~v~~~~~~~~i~I~~p~~-----~gk~~~k~F~FD~VF--------~~~atQeeVF~e 432 (1097)
.+|+|+|||||++..|.... .++... ++..+++..+.. ......+.|.||+|| ++.++|++||+.
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~ 79 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDV-DANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKC 79 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEE-ETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEe-CCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHH
Confidence 37999999999998775422 222222 233444432211 112346889999999 456899999998
Q ss_pred h-hhhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhh-cCCceEEEEEEEEEEEeccee
Q 001334 433 T-QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNT-RGDMIKYEVGVQMIEIYNEQV 510 (1097)
Q Consensus 433 v-~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~-~~~~~~y~V~VS~lEIYNE~V 510 (1097)
+ .|+|+++|+|||+||||||||||||||||+|+. +++|||||++++||..+.. ....+.|.|+|||+|||||+|
T Consensus 80 ~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i 155 (354)
T 3gbj_A 80 LGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA----DQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKV 155 (354)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEE
T ss_pred hhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCC----CCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCee
Confidence 5 999999999999999999999999999999964 5689999999999997754 345689999999999999999
Q ss_pred eeccCCCCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeec-
Q 001334 511 RDLLVSDGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELV- 589 (1097)
Q Consensus 511 ~DLL~~~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~- 589 (1097)
+|||.+.+....+.+++++. .|++|.|++++.|.|++|++.+|..|.++|++++|.||+.|||||+||+|+|.+....
T Consensus 156 ~DLL~~~~~~~~l~i~e~~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 234 (354)
T 3gbj_A 156 RDLLDPKGSRQTLKVREHSV-LGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDV 234 (354)
T ss_dssp EETTC------CBCBC-------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECT
T ss_pred eEccCCCCCCcceEEEEcCC-CCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEeccc
Confidence 99998877777889998875 6899999999999999999999999999999999999999999999999999875321
Q ss_pred ---cCceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhh------CCCCccCCCCchhhhhhhc
Q 001334 590 ---TGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQ------KSAHIPYRNSKLTQVLQDS 660 (1097)
Q Consensus 590 ---~g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~------k~~hIPYRdSKLTrLLqDS 660 (1097)
......|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.||++ +..||||||||||+||||+
T Consensus 235 ~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqds 314 (354)
T 3gbj_A 235 KSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDS 314 (354)
T ss_dssp TSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHH
T ss_pred CCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHH
Confidence 2235679999999999999999999999999999999999999999999986 4579999999999999999
Q ss_pred cCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhcc
Q 001334 661 LGGHAKTLMFVHINPEHNAIGETISTLKFAERVSS 695 (1097)
Q Consensus 661 LGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~ 695 (1097)
|||||+|+|||||||+..+++|||+||+||.||+.
T Consensus 315 LgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 315 LGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp HSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred hCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999984
No 25
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=5.6e-84 Score=727.68 Aligned_cols=328 Identities=33% Similarity=0.497 Sum_probs=262.8
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCCCCCCceEEecCCCcEEEeCCCCC------CCCCceeEeeceeeCCCCChHHHHhhh-
Q 001334 361 QVQDLKGTIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQ------GKDARKMFLFNKVFAPNVSQEQIYVDT- 433 (1097)
Q Consensus 361 ~lqelKGnIRV~cRVRP~~~~E~~~~s~v~~~~~~~~i~I~~p~~~------gk~~~k~F~FD~VF~~~atQeeVF~ev- 433 (1097)
.-.+++|+|||||||||+...+ ...+.+..++..+.+..+... .....+.|.||+||+ +++|++||+.+
T Consensus 17 ~~~~~~g~IrV~vRvRP~~~~~---~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~ 92 (358)
T 2nr8_A 17 RGSGTRKKVHAFVRVKPTDDFA---HEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVA 92 (358)
T ss_dssp ------CCEEEEEEECCCSSCC---TTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHT
T ss_pred CCCCCCCCeEEEEEcCCCCCCc---cceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHH
Confidence 3568899999999999986532 345666555566666544221 123457899999994 89999999985
Q ss_pred hhhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeec
Q 001334 434 QPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDL 513 (1097)
Q Consensus 434 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DL 513 (1097)
.|+|+++|+|||+||||||||||||||||+|+... ...+|||||++++||+.++... .+.|.|+|||+|||||+|+||
T Consensus 93 ~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~-~~~~Giipra~~~lF~~i~~~~-~~~~~v~vS~~EIYnE~i~DL 170 (358)
T 2nr8_A 93 KDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATEN-YKHRGILPRALQQVFRMIEERP-THAITVRVSYLEIYNESLFDL 170 (358)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSC-GGGBCHHHHHHHHHHHHHHTCT-TSCEEEEEEEEEEETTEEEET
T ss_pred HHHHHHHhCCCceEEEEECCCCCCCceEecccccc-cccCCcHHHHHHHHHHHHhhcC-CceEEEEEEEEEEeCCeeeEC
Confidence 99999999999999999999999999999997532 2468999999999999987754 458999999999999999999
Q ss_pred cCCCC----CCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeee-
Q 001334 514 LVSDG----SNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGREL- 588 (1097)
Q Consensus 514 L~~~~----~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~- 588 (1097)
|.+.. ....+.+++++ .|++|.|++++.|.+.+|++.+|..|.++|++++|.||+.|||||+||+|+|.+.+.
T Consensus 171 L~~~~~~~~~~~~l~i~e~~--~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~ 248 (358)
T 2nr8_A 171 LSTLPYVGPSVTPMTIVENP--QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT 248 (358)
T ss_dssp TSSSTTSCTTTSCCEEEEET--TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC---
T ss_pred cCCccccCccCCceEEEECC--CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEecc
Confidence 98643 34567888876 689999999999999999999999999999999999999999999999999987653
Q ss_pred -ccCceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhC-CCCccCCCCchhhhhhhccCCCce
Q 001334 589 -VTGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQK-SAHIPYRNSKLTQVLQDSLGGHAK 666 (1097)
Q Consensus 589 -~~g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k-~~hIPYRdSKLTrLLqDSLGGnSk 666 (1097)
..+....|+|+|||||||||++++++.|+|++|+++||+||++||+||.||+++ ..||||||||||+||||+|||||+
T Consensus 249 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnsk 328 (358)
T 2nr8_A 249 LSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCN 328 (358)
T ss_dssp ----CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSE
T ss_pred CCCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCe
Confidence 234456899999999999999999999999999999999999999999999874 579999999999999999999999
Q ss_pred eeEEEecCCCCCcHHHHHHHHHHHHHhccc
Q 001334 667 TLMFVHINPEHNAIGETISTLKFAERVSSI 696 (1097)
Q Consensus 667 TlMIa~ISP~~~~~~ETLsTLrFAsRak~I 696 (1097)
|+|||||||+..+++||++||+||+||+.|
T Consensus 329 t~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 329 MVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999976
No 26
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=8.1e-83 Score=718.73 Aligned_cols=328 Identities=30% Similarity=0.447 Sum_probs=274.3
Q ss_pred CEEEEEEeCCCCCCCCCC--CCceEEecCCCcEEEeCCCCCCC----CCceeEeeceeeCCCCChHHHHhh-hhhhHhhh
Q 001334 368 TIRVYCRVRPFLPGQSNG--QSTVDYIGENGNIMVTNPFKQGK----DARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSV 440 (1097)
Q Consensus 368 nIRV~cRVRP~~~~E~~~--~s~v~~~~~~~~i~I~~p~~~gk----~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~sv 440 (1097)
+|||||||||+...|... ..++.+. ++..+.+..|..... ...+.|.||+||+++++|++||+. +.|+|+++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~-~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 79 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVK-NNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDL 79 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEE-ETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEEC-CCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhh
Confidence 699999999999876432 3344443 445555554421111 124689999999999999999998 69999999
Q ss_pred cC-CcceeEEeeccCCCCcceeecCCCC-CcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEecceeeeccCCCC
Q 001334 441 LD-GFNVCIFAYGQTGSGKTYTMSGPDL-TAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQVRDLLVSDG 518 (1097)
Q Consensus 441 Ld-GyNvcIfAYGQTGSGKTyTM~G~~~-~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~ 518 (1097)
++ |||+||||||||||||||||+|+.. ...+.+|||||++++||..++.....+.|.|+|||+|||||+|+|||.+..
T Consensus 80 ~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 159 (360)
T 1ry6_A 80 YENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK 159 (360)
T ss_dssp HHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC--
T ss_pred ccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc
Confidence 96 9999999999999999999999742 123678999999999999988776678899999999999999999997542
Q ss_pred CCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeeeeE
Q 001334 519 SNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKGCL 598 (1097)
Q Consensus 519 ~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~skL 598 (1097)
.+.++++.. .|++|.|++++.|.|++|++++|..|.++|++++|.||+.|||||+||+|+|.+.+ .....|+|
T Consensus 160 ---~~~~~e~~~-~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~---~~~~~skL 232 (360)
T 1ry6_A 160 ---MVAALENGK-KEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN---KNTSLGKI 232 (360)
T ss_dssp -------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT---TTEEEEEE
T ss_pred ---cceeeEcCC-CCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc---CCcceeEE
Confidence 345665543 68999999999999999999999999999999999999999999999999998643 44678999
Q ss_pred EEeecCCCcccccchhhh-hhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEEEecCCCC
Q 001334 599 HLVDLAGSERVDKSEAVG-ERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEH 677 (1097)
Q Consensus 599 ~LVDLAGSER~~ks~a~G-~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~ 677 (1097)
+|||||||||..++++.| .+++|+.+||+||++||+||.||+.+..||||||||||+||||+|||||+|+|||||||+.
T Consensus 233 ~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~ 312 (360)
T 1ry6_A 233 AFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTI 312 (360)
T ss_dssp EEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBG
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCc
Confidence 999999999999998876 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhcccccccccc
Q 001334 678 NAIGETISTLKFAERVSSIELGAARS 703 (1097)
Q Consensus 678 ~~~~ETLsTLrFAsRak~I~~~~~~~ 703 (1097)
.+++||++||+||+||++|++.+..+
T Consensus 313 ~~~~ETlsTLrfA~rak~i~n~~~~~ 338 (360)
T 1ry6_A 313 SCCEQTLNTLRYSSRVKNKGNSKLEG 338 (360)
T ss_dssp GGHHHHHHHHHHHHHHCC--------
T ss_pred ccHHHHHHHHHHHHHHhhcccCcccC
Confidence 99999999999999999999876543
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=8.9e-82 Score=706.51 Aligned_cols=315 Identities=32% Similarity=0.499 Sum_probs=247.7
Q ss_pred cCCCCEEEEEEeCCCCCCCCCC-CCceEEec-CCCcEEEeCCCCCCCCCceeEeeceeeCCCCChHHHHhh-hhhhHhhh
Q 001334 364 DLKGTIRVYCRVRPFLPGQSNG-QSTVDYIG-ENGNIMVTNPFKQGKDARKMFLFNKVFAPNVSQEQIYVD-TQPLVRSV 440 (1097)
Q Consensus 364 elKGnIRV~cRVRP~~~~E~~~-~s~v~~~~-~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~atQeeVF~e-v~PLV~sv 440 (1097)
+-.++|||+|||||+.+.+..+ ..++.+.. .++..++.+ .+.|.||+||+++++|++||+. +.|+|+++
T Consensus 19 ~~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~~--------~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~ 90 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVD--------QNEFHFDHAFPATISQDEMYQALILPLVDKL 90 (344)
T ss_dssp CCCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEET--------TEEEECSEEECTTCCHHHHHHHHTHHHHHHH
T ss_pred CCCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEec--------CcEEEcceEECCCCCHHHHHHhhccchhhHh
Confidence 4478999999999998766433 34555543 233333332 4789999999999999999998 69999999
Q ss_pred cCCcceeEEeeccCCCCcceeecCCCCC--cccccCchHHHHHHHHHHhhhcCC--ceEEEEEEEEEEEecceeeeccCC
Q 001334 441 LDGFNVCIFAYGQTGSGKTYTMSGPDLT--AEETWGVNYRALRDLFQISNTRGD--MIKYEVGVQMIEIYNEQVRDLLVS 516 (1097)
Q Consensus 441 LdGyNvcIfAYGQTGSGKTyTM~G~~~~--~~e~~GIipRal~~LF~~~~~~~~--~~~y~V~VS~lEIYNE~V~DLL~~ 516 (1097)
|+|||+||||||||||||||||.|.... ..+.+|||||++++||+.+..... .+.|.|+|||+|||||+|+|||.+
T Consensus 91 l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 170 (344)
T 3dc4_A 91 LEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGS 170 (344)
T ss_dssp HHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSS
T ss_pred hCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCC
Confidence 9999999999999999999999986421 246789999999999998876543 357999999999999999999976
Q ss_pred CCCCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeeccCceeee
Q 001334 517 DGSNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVTGSILKG 596 (1097)
Q Consensus 517 ~~~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~g~~~~s 596 (1097)
...... .+..+.+++++.|.|.+|++.+|..|.++|++++|.||+.|||||+||+|+|.+. ...|
T Consensus 171 ~~~~~~---------~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~~s 235 (344)
T 3dc4_A 171 TPHMPM---------VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------THHS 235 (344)
T ss_dssp CTTSBC---------CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS------SCEE
T ss_pred CCCCcc---------ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec------CcEE
Confidence 543211 1233568899999999999999999999999999999999999999999999643 3579
Q ss_pred eEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEEEecCCC
Q 001334 597 CLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPE 676 (1097)
Q Consensus 597 kL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~ 676 (1097)
+|+|||||||||+.++++.|+|++|+.+||+||++||+||.||+.++.||||||||||+||||+||||++|+|||||||+
T Consensus 236 kl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~ 315 (344)
T 3dc4_A 236 RMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPH 315 (344)
T ss_dssp EEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCC
T ss_pred EEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhcccccccc
Q 001334 677 HNAIGETISTLKFAERVSSIELGAA 701 (1097)
Q Consensus 677 ~~~~~ETLsTLrFAsRak~I~~~~~ 701 (1097)
..+++||++||+||+||+.....++
T Consensus 316 ~~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 316 QCDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred hhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 9999999999999999998765443
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=2.6e-79 Score=743.07 Aligned_cols=334 Identities=40% Similarity=0.649 Sum_probs=267.3
Q ss_pred hhhhhhcCCCCEEEEEEeC----CCCCCCCCC-CCceEEec-------CCCcEEEeCCCCCCCCCceeEeeceeeCCCCC
Q 001334 358 LYNQVQDLKGTIRVYCRVR----PFLPGQSNG-QSTVDYIG-------ENGNIMVTNPFKQGKDARKMFLFNKVFAPNVS 425 (1097)
Q Consensus 358 L~N~lqelKGnIRV~cRVR----P~~~~E~~~-~s~v~~~~-------~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~at 425 (1097)
.-.++..+.+.+||||||| |.+..|.++ ...+.+.. ....+++..+. .+....+.|.||+||+++++
T Consensus 365 Aq~~~~~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~fd~vf~~~~~ 443 (715)
T 4h1g_A 365 AQTNAAALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNI-NNNFSNLRFLFDKIFEREQS 443 (715)
T ss_dssp HHHHHSSSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEE-TTEEEEEEEECSEEECSSCC
T ss_pred HHHHHHHHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCC-CCCCCCeEEEeceEeCCCCC
Confidence 3456788899999999999 544444332 22332221 12345554443 33446789999999999999
Q ss_pred hHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhc-CCceEEEEEEEEEE
Q 001334 426 QEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTR-GDMIKYEVGVQMIE 504 (1097)
Q Consensus 426 QeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~-~~~~~y~V~VS~lE 504 (1097)
|++||+.+.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||+.++.. ...+.|.|+|||+|
T Consensus 444 q~~v~~~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~------~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~E 517 (715)
T 4h1g_A 444 NDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP------TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIE 517 (715)
T ss_dssp HHHHGGGTHHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT------TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCceEEEEccCCCCCchhhccCCC------CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEE
Confidence 9999998899999999999999999999999999999994 4699999999999987653 44679999999999
Q ss_pred EecceeeeccCCCC-CCcccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEE
Q 001334 505 IYNEQVRDLLVSDG-SNRRLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHV 583 (1097)
Q Consensus 505 IYNE~V~DLL~~~~-~~~~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V 583 (1097)
||||+|+|||.+.. ...++.++.+...++++|.|++++.|.|.+|++++|..|.++|++++|.+|.+|||||+||+|+|
T Consensus 518 iyne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~ 597 (715)
T 4h1g_A 518 IYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDL 597 (715)
T ss_dssp EETTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEE
T ss_pred EECCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEE
Confidence 99999999998753 34567788776656699999999999999999999999999999999999999999999999999
Q ss_pred EeeeeccCceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhh-CCCCccCCCCchhhhhhhccC
Q 001334 584 LGRELVTGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQ-KSAHIPYRNSKLTQVLQDSLG 662 (1097)
Q Consensus 584 ~~~~~~~g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~-k~~hIPYRdSKLTrLLqDSLG 662 (1097)
.+.+...+....|+|+|||||||||+.++++.|+|++|+++||+||++||+||.+|+. +..||||||||||+|||||||
T Consensus 598 ~~~~~~~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slg 677 (715)
T 4h1g_A 598 QGYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLG 677 (715)
T ss_dssp EEEETTTCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTS
T ss_pred EEEecCCCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcC
Confidence 9998888888899999999999999999999999999999999999999999999985 458999999999999999999
Q ss_pred CCceeeEEEecCCCCCcHHHHHHHHHHHHHhccccc
Q 001334 663 GHAKTLMFVHINPEHNAIGETISTLKFAERVSSIEL 698 (1097)
Q Consensus 663 GnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~ 698 (1097)
|||+|+|||||||+..+++||++||+||+||++|++
T Consensus 678 gn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~~ 713 (715)
T 4h1g_A 678 GNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713 (715)
T ss_dssp TTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---
T ss_pred CCceEEEEEEECCChhhHHHHHHHHHHHHHhcccee
Confidence 999999999999999999999999999999999974
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.7e-33 Score=302.95 Aligned_cols=278 Identities=18% Similarity=0.255 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCEEEEEEeCCCC-CCCCCCCCc-eEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCC
Q 001334 347 SYQKVLEENRVLYNQVQDLKGTIRVYCRVRPFL-PGQSNGQST-VDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNV 424 (1097)
Q Consensus 347 ~~~~~l~err~L~N~lqelKGnIRV~cRVRP~~-~~E~~~~s~-v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~a 424 (1097)
.|+++...||+|||.++||||||||||||||.. + ..+ +++.. ..+.+ +. ..+.|.||+||++.+
T Consensus 4 K~eqE~~~RRkL~NsI~ELKGnIRVFcrvrp~~~p-----~~~~v~y~~--~~I~v-~~------~~k~f~FDRVf~p~s 69 (298)
T 2o0a_A 4 TVEKELLRSRRLENSIIEQKGTMRCYAYVMEQNLP-----ENLLFDYEN--GVITQ-GL------SEHVYKFNRVIPHLK 69 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEEEECGGGSC-----TTEEEETTT--TEEEE-TT------TCCEEECSEEEETTT
T ss_pred HHHHHHHHHHHHHhHHHHhhCceEEEEEeccccCC-----ccceeecCc--cceee-cC------CCceEEeeeEECccc
Confidence 456667789999999999999999999999965 3 222 44432 33444 32 127999999999999
Q ss_pred ChH--HHHhhhhhhHhhhcC-CcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhh-cCCceEEEEEE
Q 001334 425 SQE--QIYVDTQPLVRSVLD-GFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNT-RGDMIKYEVGV 500 (1097)
Q Consensus 425 tQe--eVF~ev~PLV~svLd-GyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~-~~~~~~y~V~V 500 (1097)
+|+ +||++++++|++||+ |||+||||||||||||| ||++..+|..... .. |.|.+++
T Consensus 70 ~Qe~~~vf~E~~~~i~scLd~GyNvcIfSyGQTGsGKT-----------------~ral~q~f~~~~~~~~--~~Y~~tl 130 (298)
T 2o0a_A 70 VSEDKFFTQEYSVYHDMCLNQKKNFNLISLSTTPHGSL-----------------RESLIKFLAEKDTIYQ--KQYVITL 130 (298)
T ss_dssp SCHHHHHHHTTHHHHHHHHHTTCCEEEEEECSSCCHHH-----------------HHHHHHHHHSTTSHHH--HHEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcc-----------------HHHHHHHHHHhhhhcc--cceEEEE
Confidence 999 999999999999999 99999999999999999 9999999987754 33 8999999
Q ss_pred EEEEEe-cceeeeccCCCCCCcccceecccCCCCeeecCCcEEeeCC-HHHHHHHHHHHHhcccccccCCcCCCCCceEE
Q 001334 501 QMIEIY-NEQVRDLLVSDGSNRRLDIRNTAQANGLNVPDASLIPVTS-TEDVIELMRIGQKNRAVGATALNERSSRSHSV 578 (1097)
Q Consensus 501 S~lEIY-NE~V~DLL~~~~~~~~l~Ir~~~~~~G~~V~gltev~V~S-~eev~~LL~~G~~nR~~asT~~N~~SSRSHaI 578 (1097)
||+||| ||.++|||..++....++|+.+.. ++..|.|++.++|.+ .+|+..++..+.. +.+|+ +.-.|
T Consensus 131 q~veLy~Ne~~~DLL~~~~~~~k~eIk~~~~-g~~iv~~s~~i~V~~~~edv~~~~~~~~~------~~~~~---~gi~i 200 (298)
T 2o0a_A 131 QFVFLSDDEFSQDMLLDYSHNDKDSIKLKFE-KHSISLDSKLVIIENGLEDLPLNFSCDEH------PNLPH---SGMGI 200 (298)
T ss_dssp EEEEEECC-CEEETTSCCC------CEEEEC-SSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEE
T ss_pred EEEEEecCCchHHhcCCCCCCCcceEEecCC-CCEEecccEEEEccccHHHHHHHhhcccc------cccCC---CCceE
Confidence 999999 999999997555555778887654 678899999999999 9998887732221 12222 33567
Q ss_pred EEEEEEeeeeccC---ceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhh
Q 001334 579 LTVHVLGRELVTG---SILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQ 655 (1097)
Q Consensus 579 ftI~V~~~~~~~g---~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTr 655 (1097)
+.+.+...+.... ....--++|+.+.-.. +...|.+ ++..+ -+-.|+++-
T Consensus 201 ~k~~~~~~~~~~~~~~~~~~~d~yf~e~~~~~--------------------~~~~l~~---~~~~~----~~~~spi~~ 253 (298)
T 2o0a_A 201 IKVQFFPRDSKSDGNNDPVPVDFYFIELNNLK--------------------SIEQFDK---SIFKK----ESCETPIAL 253 (298)
T ss_dssp EEEEEEESCC-------CCCEEEEEEEECSHH--------------------HHHHHHH---HHHTC-----CCCSHHHH
T ss_pred EEEEEecCcccccccCCCCceEEEEEEeCCHH--------------------HHHHHHh---hcccc----cccCCcHHH
Confidence 7777766432111 1123346777764211 1222222 22222 356788898
Q ss_pred hhhhccCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhcccccc
Q 001334 656 VLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELG 699 (1097)
Q Consensus 656 LLqDSLGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~ 699 (1097)
+||.-|. ..|-++++++.-..... .-|..++++..+.+.
T Consensus 254 il~~ll~-~tks~~~~~l~~~~~~~----~lL~~s~~i~~~~~~ 292 (298)
T 2o0a_A 254 VLKKLIS-DTKSFFLLNLNDSKNVN----KLLTISEEVQTQLCK 292 (298)
T ss_dssp HHHHHHH-HSBCEEEEEECCGGGHH----HHHHHHHHHHHHTC-
T ss_pred HHHHHHh-cCcceEEEEecCCCchh----HHHHHHHHhhcccCc
Confidence 8887663 56788999998754333 377788887776643
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=4.2e-27 Score=227.38 Aligned_cols=110 Identities=40% Similarity=0.595 Sum_probs=96.1
Q ss_pred HhhHHHHHHHHHHHhhCC-CCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhccccccccccc
Q 001334 626 NRSLSALGDVISALAQKS-AHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSN 704 (1097)
Q Consensus 626 NkSLsALg~VI~ALa~k~-~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~~~~~ 704 (1097)
|+||++||+||.+|+++. .||||||||||+||||+|||||+|+|||||||+..+++||++||+||+||+.|++.+..+.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 899999999999999874 6999999999999999999999999999999999999999999999999999999887665
Q ss_pred cchh-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 705 KESG-----EIRELREEISNLKQTLEKKEAELEQLR 735 (1097)
Q Consensus 705 ~~~~-----~i~eLreEI~~LK~~L~~~e~eleqlr 735 (1097)
.... .+++..+++..|+..++.++.|++++|
T Consensus 81 ~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4322 344455667778888888888887775
No 31
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=1.1e-27 Score=225.39 Aligned_cols=84 Identities=44% Similarity=0.639 Sum_probs=78.9
Q ss_pred HHHHhhHHHHHHHHHHHhhC-CCCccCCCCchhhhhhhccCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhcccccccc
Q 001334 623 QHINRSLSALGDVISALAQK-SAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAA 701 (1097)
Q Consensus 623 ~~INkSLsALg~VI~ALa~k-~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~~~~ETLsTLrFAsRak~I~~~~~ 701 (1097)
++||+||++||+||.+|+++ ..||||||||||+||||+||||++|+|||||||+..+++||++||+||+||+.|++.+.
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~ 81 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 81 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence 47999999999999999987 68999999999999999999999999999999999999999999999999999999887
Q ss_pred ccccc
Q 001334 702 RSNKE 706 (1097)
Q Consensus 702 ~~~~~ 706 (1097)
.+...
T Consensus 82 ~n~~~ 86 (100)
T 2kin_B 82 VNLEL 86 (100)
T ss_dssp CEEEC
T ss_pred eccCC
Confidence 66543
No 32
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=99.87 E-value=3e-23 Score=207.11 Aligned_cols=101 Identities=22% Similarity=0.346 Sum_probs=89.4
Q ss_pred CCCccCCCCC-CCCCHHHHHHHhHhHHHHHHHHhhhCC---CCcc-ceecCchhhhhcccchhhhhhHHHhhHHHHHHHH
Q 001334 1 MDKGASGTLP-KEPSEEEFRLALRNGLILCNVLNKVNP---GAVL-KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAV 75 (1097)
Q Consensus 1 ie~v~~~~l~-~~~s~edf~~~LrDGvILC~L~N~l~P---gsV~-kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac 75 (1097)
|+.+++++++ ++++.++|.++||||||||+|+|+|+| |+|+ ++. .+.++ |++||||++||+||
T Consensus 18 Ie~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~kin-~~~~~-----------f~~~eNI~~FL~ac 85 (144)
T 1ujo_A 18 IVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPEN-PPSMV-----------FKQMEQVAQFLKAA 85 (144)
T ss_dssp HHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSS-CCCSH-----------HHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcceeec-CCCch-----------hHHHHHHHHHHHHH
Confidence 4678899987 356778999999999999999999999 8897 554 33333 99999999999999
Q ss_pred HhcCCC---ceecCcccccCChhhHHHHHHHHhhhhhhhcc
Q 001334 76 KDMQLL---TFEASDLEKGGSSSKVVDCILCLKGYYEWKQA 113 (1097)
Q Consensus 76 ~~lg~~---lFet~DL~e~kn~~kVv~cLlaLks~~~~K~~ 113 (1097)
+.+|++ +|++.||||++|+.+|+.||++|+.++..+..
T Consensus 86 ~~~Gv~~~~lF~t~DL~e~kn~~~V~~cL~aL~~~a~~~~~ 126 (144)
T 1ujo_A 86 EDYGVIKTDMFQTVDLYEGKDMAAVQRTLMALGSLAVTKND 126 (144)
T ss_dssp HHHTCCSSSCCCHHHHHTCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHcCcCccccCChhHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 999888 89999999999999999999999999998864
No 33
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.87 E-value=3.3e-23 Score=201.20 Aligned_cols=88 Identities=30% Similarity=0.514 Sum_probs=79.6
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCCceecCcccccC
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLLTFEASDLEKGG 92 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~lFet~DL~e~k 92 (1097)
+++++|.++||||+|||+|+|+++||+|++++..|.++ |+++|||++||+||+.+|+++|++.||||++
T Consensus 30 ~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~ki~~~~~~~-----------f~~~eNI~~FL~a~~~~g~~~F~~~DL~e~k 98 (121)
T 1wyr_A 30 DPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTE-----------ADCINNINDFLKGCATLQVEIFDPDDLYSGV 98 (121)
T ss_dssp CHHHHHHHHHHHSHHHHHHHHHHSTTCCSCCCSSCCSH-----------HHHHHHHHHHHHHHHHHTCCCCCHHHHHTCS
T ss_pred CcHHHHHHHHccHHHHHHHHHHhCCCCCCcCCCCCcch-----------HHHHHHHHHHHHHHHHcCCCccCHHHHHcCC
Confidence 34445799999999999999999999999887666555 9999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhhhhhhh
Q 001334 93 SSSKVVDCILCLKGYYEWK 111 (1097)
Q Consensus 93 n~~kVv~cLlaLks~~~~K 111 (1097)
|+.+|+.||++|+.++...
T Consensus 99 n~~~V~~cL~aL~~~~~~~ 117 (121)
T 1wyr_A 99 NFSKVLSTLLAVNKATESG 117 (121)
T ss_dssp CHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHHhC
Confidence 9999999999999887653
No 34
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=7.4e-23 Score=206.53 Aligned_cols=101 Identities=23% Similarity=0.428 Sum_probs=90.1
Q ss_pred CCCccCCCCCC-CCCHHHHHHHhHhHHHHHHHHhhhCC---CCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHH
Q 001334 1 MDKGASGTLPK-EPSEEEFRLALRNGLILCNVLNKVNP---GAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVK 76 (1097)
Q Consensus 1 ie~v~~~~l~~-~~s~edf~~~LrDGvILC~L~N~l~P---gsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~ 76 (1097)
|+.++|++++. +++.++|.++|+||||||+|+|.|+| |+|+++.. +.++ |++||||++||+||+
T Consensus 26 Ie~~l~~~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~kIn~-~~~~-----------F~~~eNI~~FL~ac~ 93 (155)
T 1wym_A 26 ITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQA-STMA-----------FKQMEQISQFLQAAE 93 (155)
T ss_dssp HHHHSSSCCCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCCCCCC-CCCH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcCcccC-CCcc-----------ccHHHHHHHHHHHHH
Confidence 46789999985 57789999999999999999999999 99987653 3344 999999999999999
Q ss_pred hcCCC---ceecCcccccCChhhHHHHHHHHhhhhhhhcc
Q 001334 77 DMQLL---TFEASDLEKGGSSSKVVDCILCLKGYYEWKQA 113 (1097)
Q Consensus 77 ~lg~~---lFet~DL~e~kn~~kVv~cLlaLks~~~~K~~ 113 (1097)
.+|++ +|++.||||++|+.+|+.||++|+.++..+..
T Consensus 94 ~~Gv~~~~lF~t~DL~e~kn~~~Vi~cL~aL~~~a~~~~~ 133 (155)
T 1wym_A 94 RYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDD 133 (155)
T ss_dssp HHTCCTTTCCCHHHHHTCSCHHHHHHHHHHHHHHHTTCSS
T ss_pred HcCCCccccCChHHHHhcCCHHHHHHHHHHHHHHHHHCCC
Confidence 99888 79999999999999999999999999887643
No 35
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=198.75 Aligned_cols=88 Identities=30% Similarity=0.537 Sum_probs=80.3
Q ss_pred CCHHHH-HHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHh-cCCCceecCcccc
Q 001334 13 PSEEEF-RLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKD-MQLLTFEASDLEK 90 (1097)
Q Consensus 13 ~s~edf-~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~-lg~~lFet~DL~e 90 (1097)
++.++| +++||||||||+|+|+++||+|++++..|.++ |+++|||++||+||+. +|+++|+|.||||
T Consensus 35 ~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~kI~~~~~~~-----------f~~~eNI~~FL~a~~~~~g~~lF~t~DL~e 103 (126)
T 2l3g_A 35 SDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRSE-----------SECLSNIREFLRGCGASLRLETFDANDLYQ 103 (126)
T ss_dssp SCHHHHHHHHHTTSHHHHHHHHHHSTTCCSCCCSSCCSH-----------HHHHHHHHHHHHHHHHTSCCCCCCHHHHHT
T ss_pred CChhhHHHHHHccHHHHHHHHHHhCCCCCCccCCCCCcc-----------hHHHHHHHHHHHHHHHhCCCCccCHHHHHh
Confidence 566677 79999999999999999999999887766555 9999999999999999 9999999999999
Q ss_pred cCChhhHHHHHHHHhhhhhhh
Q 001334 91 GGSSSKVVDCILCLKGYYEWK 111 (1097)
Q Consensus 91 ~kn~~kVv~cLlaLks~~~~K 111 (1097)
++|+++|+.||++|+.++...
T Consensus 104 ~kn~~~V~~cL~aL~~~~~~~ 124 (126)
T 2l3g_A 104 GQNFNKVLSSLVTLNKVTADI 124 (126)
T ss_dssp TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999887643
No 36
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.86 E-value=7.5e-23 Score=207.26 Aligned_cols=97 Identities=24% Similarity=0.448 Sum_probs=87.4
Q ss_pred CCCccCCCCCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCC
Q 001334 1 MDKGASGTLPKEPSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQL 80 (1097)
Q Consensus 1 ie~v~~~~l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~ 80 (1097)
|+.++|+++| +.++|.++|+||||||+|+|+|+||+|++++..+.++ |+++|||++||+||+.+|+
T Consensus 20 Ie~~l~~~l~---~~~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~~~~~-----------f~~~eNI~~FL~a~~~~Gv 85 (159)
T 1p2x_A 20 IEECLGTDLG---PTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQ-----------FRHSDNINKFLDFIHGIGL 85 (159)
T ss_dssp HHHHHTSCCC---CGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCC-----------TTHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCC---ChHHHHHHHcchHHHHHHHHHhCCCCccccccccCCc-----------chHHHHHHHHHHHHHHcCC
Confidence 4678899985 6678999999999999999999999998876544444 9999999999999999998
Q ss_pred C---ceecCcccccCChhhHHHHHHHHhhhhhhh
Q 001334 81 L---TFEASDLEKGGSSSKVVDCILCLKGYYEWK 111 (1097)
Q Consensus 81 ~---lFet~DL~e~kn~~kVv~cLlaLks~~~~K 111 (1097)
| +|+|.||||++|+.+|+.||++|+.++..+
T Consensus 86 ~~~~lF~~~DL~e~kn~~~Vi~~L~aL~~~~~~~ 119 (159)
T 1p2x_A 86 PEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQ 119 (159)
T ss_dssp CGGGCCCHHHHSSCSCHHHHHHHHHHHHHHHHTT
T ss_pred CcccccCHHHHHhcCCHHHHHHHHHHHHHHHhhC
Confidence 8 799999999999999999999999998765
No 37
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=99.85 E-value=8.5e-23 Score=194.51 Aligned_cols=94 Identities=31% Similarity=0.552 Sum_probs=83.4
Q ss_pred CCCccCCCCCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCC
Q 001334 1 MDKGASGTLPKEPSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQL 80 (1097)
Q Consensus 1 ie~v~~~~l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~ 80 (1097)
|+.++|++++ ++|.++||||+|||+|+|+++||+|+++.. +.++ |+++|||++||+||+.+|+
T Consensus 12 Ie~~l~~~~~-----~~l~~~L~dGvvLCkL~N~l~P~~v~ki~~-~~~~-----------f~~~eNI~~Fl~a~~~~Gv 74 (108)
T 1h67_A 12 IEGATGRRIG-----DNFMDGLKDGVILCELINKLQPGSVQKVND-PVQN-----------WHKLENIGNFLRAIKHYGV 74 (108)
T ss_dssp HHHHHSCCCC-----SCHHHHHHHCSHHHHHHHHHSTTSSTTCCC-TTSS-----------HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCCc-----HHHHHHHccHHHHHHHHHHhCCCCcccccc-cccc-----------hHHHHHHHHHHHHHHHcCC
Confidence 4567888873 479999999999999999999999987653 3333 9999999999999999999
Q ss_pred C---ceecCcccccCChhhHHHHHHHHhhhhhhh
Q 001334 81 L---TFEASDLEKGGSSSKVVDCILCLKGYYEWK 111 (1097)
Q Consensus 81 ~---lFet~DL~e~kn~~kVv~cLlaLks~~~~K 111 (1097)
+ +|++.||||++|+.+|+.||++|++++..|
T Consensus 75 ~~~~lF~~~DL~e~kn~~~V~~~l~aL~~~a~~k 108 (108)
T 1h67_A 75 KPHDIFEANDLFENTNHTQVQSTLIALASQAKTK 108 (108)
T ss_dssp CGGGSCCHHHHHHTCCSHHHHHHHHHHHHHHHHC
T ss_pred CcccccChhHHHhCCChHHHHHHHHHHHHHHccC
Confidence 9 899999999999999999999999988654
No 38
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.85 E-value=2.8e-22 Score=198.27 Aligned_cols=95 Identities=28% Similarity=0.480 Sum_probs=85.0
Q ss_pred CCCccCCCCCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCC
Q 001334 1 MDKGASGTLPKEPSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQL 80 (1097)
Q Consensus 1 ie~v~~~~l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~ 80 (1097)
|+.++|++++ ++|.++|+||+|||+|+|+|+||+|+++.. +.++ |+++|||++||+||+.+|+
T Consensus 26 Ie~~l~~~~~-----~~l~~~L~DGvvLCkL~N~l~P~~v~ki~~-~~~~-----------f~~~eNI~~Fl~a~~~~Gv 88 (136)
T 1wyp_A 26 IEGVTGRRIG-----NNFMDGLKDGIILCEFINKLQPGSVKKINE-STQN-----------WHQLENIGNFIKAITKYGV 88 (136)
T ss_dssp HHHHTCCCCC-----SCTTHHHHTSHHHHHHHHHHSTTSSSCCCC-SSCS-----------HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCCc-----HHHHHHHccHHhHHHHHHhhCCCCcccccc-cccc-----------hHHHHHHHHHHHHHHHcCC
Confidence 4667888873 479999999999999999999999977643 3333 9999999999999999999
Q ss_pred C---ceecCcccccCChhhHHHHHHHHhhhhhhhc
Q 001334 81 L---TFEASDLEKGGSSSKVVDCILCLKGYYEWKQ 112 (1097)
Q Consensus 81 ~---lFet~DL~e~kn~~kVv~cLlaLks~~~~K~ 112 (1097)
+ +|++.||||++|+.+|+.||++|+.++..+.
T Consensus 89 ~~~~lF~~~DL~e~kn~~~V~~cL~aL~~~a~~~g 123 (136)
T 1wyp_A 89 KPHDIFEANDLFENTNHTQVQSTLLALASMAKTKG 123 (136)
T ss_dssp CGGGCCCHHHHHSCSCSHHHHHHHHHHHHHHHHHT
T ss_pred CcccccCchHHhcCCCHHHHHHHHHHHHHHHHHCC
Confidence 8 8999999999999999999999999998876
No 39
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.84 E-value=8e-22 Score=206.88 Aligned_cols=97 Identities=24% Similarity=0.448 Sum_probs=86.8
Q ss_pred CCCccCCCCCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCC
Q 001334 1 MDKGASGTLPKEPSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQL 80 (1097)
Q Consensus 1 ie~v~~~~l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~ 80 (1097)
|+.+++++|| +.++|.++|+||||||+|+|+|+||+|++++..+.++ |+|+|||++||+||+.+|+
T Consensus 64 Ie~~l~~~l~---~~~~f~~~LrDGvvLCkLiN~l~P~sv~kI~~~s~~~-----------f~~~eNI~~FL~ac~~~Gv 129 (203)
T 1p5s_A 64 IEECLGTDLG---PTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQ-----------FRHSDNINKFLDFIHGIGL 129 (203)
T ss_dssp HHHHHTSCCC---CGGGHHHHHTTSHHHHHHHHHHCTTSCCCCCCCSSSC-----------CCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCC---ChHHHHHHHcchHHHHHHHHHhCCCCcccccCCCCCc-----------chHHHHHHHHHHHHHHcCC
Confidence 4678888885 6679999999999999999999999998876555444 9999999999999999998
Q ss_pred C---ceecCcccccCChhhHHHHHHHHhhhhhhh
Q 001334 81 L---TFEASDLEKGGSSSKVVDCILCLKGYYEWK 111 (1097)
Q Consensus 81 ~---lFet~DL~e~kn~~kVv~cLlaLks~~~~K 111 (1097)
+ +|++.||||++|+.+|+.||++|+.++..+
T Consensus 130 p~~~lF~t~DL~e~kn~~~Vi~~L~aL~~~a~~~ 163 (203)
T 1p5s_A 130 PEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQ 163 (203)
T ss_dssp CGGGCCCHHHHHSCSCHHHHHHHHHHHHHHHHHT
T ss_pred CcccccCHHHHHhcCCHHHHHHHHHHHHHHHhhc
Confidence 8 699999999999999999999999988654
No 40
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=99.84 E-value=8.7e-22 Score=204.75 Aligned_cols=104 Identities=23% Similarity=0.301 Sum_probs=86.3
Q ss_pred CCCccCCCCCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCcc--ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhc
Q 001334 1 MDKGASGTLPKEPSEEEFRLALRNGLILCNVLNKVNPGAVL--KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDM 78 (1097)
Q Consensus 1 ie~v~~~~l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV~--kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~l 78 (1097)
|+.|+|+++| +.++|.++|+||||||+|+|+|+||+|+ ||+..+...+. ....+|+|||||++||+||+.+
T Consensus 34 Ie~~lg~~lp---~~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~----~~~~~f~~~eNI~~FL~ac~~~ 106 (190)
T 2rr8_A 34 MEACLGEDLP---PTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYK----ATGLHFRHTDNVIQWLNAMDEI 106 (190)
T ss_dssp HHHHSCCCCC---CHHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHH----HTCCCSSTHHHHHHHHHGGGGT
T ss_pred HHHHhCCCCC---ChhHHHHHHcchhhHHHHHHHhCCCCccccccccccccccc----CCCCcchHHHHHHHHHHHHHHc
Confidence 4678899884 5789999999999999999999999995 55543311110 1113599999999999999999
Q ss_pred CCC---ceecCcccccCChhhHHHHHHHHhhhhhhh
Q 001334 79 QLL---TFEASDLEKGGSSSKVVDCILCLKGYYEWK 111 (1097)
Q Consensus 79 g~~---lFet~DL~e~kn~~kVv~cLlaLks~~~~K 111 (1097)
|+| +|+|.||||++|+.+|+.||++|+.++..+
T Consensus 107 Gvp~~~lFet~DL~e~kn~~~Vi~cL~aL~~~a~~~ 142 (190)
T 2rr8_A 107 GLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFKL 142 (190)
T ss_dssp TCCSTTCCCHHHHTCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCccccCCHHHHHhcCCHHHHHHHHHHHHHHHHHC
Confidence 887 799999999999999999999999998654
No 41
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.2e-21 Score=204.08 Aligned_cols=104 Identities=23% Similarity=0.301 Sum_probs=85.8
Q ss_pred CCCccCCCCCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCcc--ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhc
Q 001334 1 MDKGASGTLPKEPSEEEFRLALRNGLILCNVLNKVNPGAVL--KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDM 78 (1097)
Q Consensus 1 ie~v~~~~l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV~--kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~l 78 (1097)
|+.++|+++| +.++|.++|+||||||+|+|+|+||+|+ +|+..+...+. ....+|+|||||++||+||+.+
T Consensus 56 Ie~~lg~~l~---~~~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~----~~~~~F~~~eNI~~FL~ac~~~ 128 (193)
T 3i6x_A 56 MEACLGEDLP---PTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYK----ATGLHFRHTDNVIQWLNAMDEI 128 (193)
T ss_dssp HHHHHSSCCC---CGGGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHH----HSCCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCC---ChHHHHHHhccHHHHHHHHHHHCCCCCCccccCCccccccc----CcccchHHHHHHHHHHHHHHHc
Confidence 5678999995 4578999999999999999999999997 55433211100 1123599999999999999999
Q ss_pred CCC---ceecCcccccCChhhHHHHHHHHhhhhhhh
Q 001334 79 QLL---TFEASDLEKGGSSSKVVDCILCLKGYYEWK 111 (1097)
Q Consensus 79 g~~---lFet~DL~e~kn~~kVv~cLlaLks~~~~K 111 (1097)
|+| +|++.|||+++|+.+|+.||++|+.++..+
T Consensus 129 Gvp~~~lFet~DL~e~kn~~~V~~cL~aL~~~a~~~ 164 (193)
T 3i6x_A 129 GLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFKL 164 (193)
T ss_dssp TCCGGGCCCHHHHHSCSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCcccCCCcHHHhcCCCHHHHHHHHHHHHHHHhhC
Confidence 988 799999999999999999999998887543
No 42
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-21 Score=194.25 Aligned_cols=94 Identities=30% Similarity=0.505 Sum_probs=83.3
Q ss_pred CCCccCCCCCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCC
Q 001334 1 MDKGASGTLPKEPSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQL 80 (1097)
Q Consensus 1 ie~v~~~~l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~ 80 (1097)
|+.++|++++ ++|.++|+||||||+|+|+|+||+|+++.. +.+ +|+++|||++||+||+.+|+
T Consensus 26 Ie~~l~~~i~-----~~l~~~L~DGvvLCkL~N~l~P~~v~kin~-~~~-----------~f~~~eNI~~FL~a~~~~Gv 88 (146)
T 1wyn_A 26 IEGLTGLSIG-----PDFQKGLKDGTILCTLMNKLQPGSVPKINR-SMQ-----------NWHQLENLSNFIKAMVSYGM 88 (146)
T ss_dssp HHHHHCCCCC-----SCHHHHHHTTSHHHHHHHHHCTTSCSCCCC-SSC-----------HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCCc-----HHHHHHHccHHHHHHHHHHhCCCCcccccc-ccc-----------cccHHHHHHHHHHHHHHcCC
Confidence 4567888873 579999999999999999999999977654 333 39999999999999999988
Q ss_pred C---ceecCcccccCChhhHHHHHHHHhhhhhhh
Q 001334 81 L---TFEASDLEKGGSSSKVVDCILCLKGYYEWK 111 (1097)
Q Consensus 81 ~---lFet~DL~e~kn~~kVv~cLlaLks~~~~K 111 (1097)
+ +|++.||||++|+.+|+.||++|+.++..+
T Consensus 89 ~~~~lF~~~DL~e~kn~~~V~~cL~aL~~~a~~~ 122 (146)
T 1wyn_A 89 NPVDLFEANDLFESGNMTQVQVSLLALAGKAKTK 122 (146)
T ss_dssp CSSSCCCHHHHHTCSCSHHHHHHHHHHHHHHGGG
T ss_pred CcccccChhHHHhcCChHHHHHHHHHHHHHHHhC
Confidence 8 899999999999999999999999998655
No 43
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.69 E-value=1.3e-17 Score=198.57 Aligned_cols=97 Identities=29% Similarity=0.364 Sum_probs=84.5
Q ss_pred CCCCHHHHHHHhHhHHHHHHHHhhhCCCCcc--ceecCchhhhhcccchhhhhhHHHhhHHHHHHHH-HhcCCC---cee
Q 001334 11 KEPSEEEFRLALRNGLILCNVLNKVNPGAVL--KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAV-KDMQLL---TFE 84 (1097)
Q Consensus 11 ~~~s~edf~~~LrDGvILC~L~N~l~PgsV~--kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac-~~lg~~---lFe 84 (1097)
++.+.+||.++||||++||+|+|+|+||+|+ ++...|++ ++|+|||||++||+|| +.+|+| +|+
T Consensus 29 ~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~~~----------~~f~~~~ni~~Fl~~~~~~~g~~~~~~f~ 98 (587)
T 3ky9_A 29 EGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRPQM----------SQFLCLKNIRTFLSTCCEKFGLKRSELFE 98 (587)
T ss_dssp TTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSCTT----------BHHHHHHHHHHHHHHHHHTTCCCTTSSCC
T ss_pred CCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCccc----------cchHHHHHHHHHHHHHHHHcCCCHHHcCC
Confidence 4567899999999999999999999999995 44444433 2599999999999999 889888 899
Q ss_pred cCcccccCChhhHHHHHHHHhhhhhhhccCCCc
Q 001334 85 ASDLEKGGSSSKVVDCILCLKGYYEWKQAGGIG 117 (1097)
Q Consensus 85 t~DL~e~kn~~kVv~cLlaLks~~~~K~~Gg~g 117 (1097)
++|||+++|+.+|+.||++|+..+.++..|..|
T Consensus 99 ~~Dl~~~~~~~~V~~~l~~l~~~~~~~~~g~~~ 131 (587)
T 3ky9_A 99 AFDLFDVQDFGKVIYTLSALSWTPIAQNRGIMP 131 (587)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHSTTTGGGTCCC
T ss_pred chhhhccCCcchHHHHHHHHhhhhhhhccCCCC
Confidence 999999999999999999999988888776543
No 44
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=9.2e-11 Score=114.70 Aligned_cols=85 Identities=14% Similarity=0.258 Sum_probs=74.2
Q ss_pred CHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC--ceecCccccc
Q 001334 14 SEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL--TFEASDLEKG 91 (1097)
Q Consensus 14 s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~--lFet~DL~e~ 91 (1097)
...||...|+||++||+|+|.+.|+.++++...|.+. |+++|||..||.+++.+|+. -..+.|+++
T Consensus 39 ~v~dl~~dL~DGv~L~~Lle~L~~~~l~~~~~~p~~~-----------~~~~eNv~~aL~~~~~~gv~~~~i~~~DI~d- 106 (129)
T 2yrn_A 39 LIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNR-----------SQMIENIDACLNFLAAKGINIQGLSAEEIRN- 106 (129)
T ss_dssp CCSCHHHHSSSSHHHHHHHHHHTTCCCTTCCSSCCST-----------THHHHHHHHHHHHHHHHTCCCTTCCHHHHHH-
T ss_pred cchhHHHHcccHHHHHHHHHHHhcCCcccccCCCCcH-----------HHHHHHHHHHHHHHHHhCCcccCCChhhhhc-
Confidence 3578999999999999999999999998776666555 99999999999999998876 358999997
Q ss_pred CChhhHHHHHHHHhhhhhh
Q 001334 92 GSSSKVVDCILCLKGYYEW 110 (1097)
Q Consensus 92 kn~~kVv~cLlaLks~~~~ 110 (1097)
+|...|+-+|.+|..|+..
T Consensus 107 gn~~~iL~Llw~L~r~~q~ 125 (129)
T 2yrn_A 107 GNLKAILGLFFSLSRYKQQ 125 (129)
T ss_dssp TCHHHHHHHHHHHHHHHSS
T ss_pred CCHhHHHHHHHHHHHHHhh
Confidence 8899999999999877653
No 45
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=98.61 E-value=1.4e-08 Score=119.63 Aligned_cols=76 Identities=21% Similarity=0.430 Sum_probs=63.9
Q ss_pred CCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCc--cceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC--cee
Q 001334 9 LPKEPSEEEFRLALRNGLILCNVLNKVNPGAV--LKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL--TFE 84 (1097)
Q Consensus 9 l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV--~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~--lFe 84 (1097)
+|.++...||.+.|+||++||+|+|.+.|+.| +++...+.+ +.|+++|||..||.+|+.+|++ -..
T Consensus 30 l~~~~~v~~l~~dL~DGv~L~~Lin~l~~~~i~~~~in~~~~~----------~~~~~~eNi~~~L~~~k~~g~~~~~i~ 99 (506)
T 1pxy_A 30 LPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVL----------NPWERNENHTLCLNSAKAVGCSVVNIG 99 (506)
T ss_dssp CSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSC----------CHHHHHHHHHHHHHHHHHTTCCCTTCC
T ss_pred CCCCCchhHHHHHhcchHHHHHHHHHHcCCCCCccccCccccc----------cHHHHHHHHHHHHHHHHHhCCCcCCCC
Confidence 56678889999999999999999999999999 444444322 3499999999999999999877 348
Q ss_pred cCcccccCCh
Q 001334 85 ASDLEKGGSS 94 (1097)
Q Consensus 85 t~DL~e~kn~ 94 (1097)
+.||++|++.
T Consensus 100 ~~Dl~dg~~~ 109 (506)
T 1pxy_A 100 TQDLAEGRPH 109 (506)
T ss_dssp HHHHHHTCHH
T ss_pred HHHHhcCChH
Confidence 9999999875
No 46
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=98.45 E-value=8.8e-08 Score=104.48 Aligned_cols=86 Identities=19% Similarity=0.374 Sum_probs=65.2
Q ss_pred CCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCcc-ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC--ceec
Q 001334 9 LPKEPSEEEFRLALRNGLILCNVLNKVNPGAVL-KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL--TFEA 85 (1097)
Q Consensus 9 l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV~-kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~--lFet 85 (1097)
+|.++...||...|+||++||+|+|.+.|+.|+ +.++.+.+ ..|+++|||..||.+|+.+|+. -+.+
T Consensus 47 ~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~~~----------~~~~~~eNv~~aL~~~k~~g~~l~~I~~ 116 (275)
T 1aoa_A 47 IPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKL----------TPFIIQENLNLALNSASAIGCHVVNIGA 116 (275)
T ss_dssp CSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSC----------CHHHHHHHHHHHHHHHHHTTCCCTTCCH
T ss_pred CCCCCccchHHHHhccHHHHHHHHHHhcCCCCCccccCCCCC----------CHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 344566789999999999999999999999996 33433322 2499999999999999999776 4799
Q ss_pred CcccccCChhhHHHHHHHHh
Q 001334 86 SDLEKGGSSSKVVDCILCLK 105 (1097)
Q Consensus 86 ~DL~e~kn~~kVv~cLlaLk 105 (1097)
.||++|.-- .++--|..|-
T Consensus 117 ~DIvdg~~~-liLgLlw~li 135 (275)
T 1aoa_A 117 EDLRAGKPH-LVLGLLWQII 135 (275)
T ss_dssp HHHHTTCHH-HHHHHHHHHH
T ss_pred HHHHcCcHH-HHHHHHHHHH
Confidence 999998632 3433334443
No 47
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=98.44 E-value=1.3e-07 Score=92.20 Aligned_cols=94 Identities=19% Similarity=0.326 Sum_probs=72.2
Q ss_pred CCccCCCCCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCcc--ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcC
Q 001334 2 DKGASGTLPKEPSEEEFRLALRNGLILCNVLNKVNPGAVL--KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQ 79 (1097)
Q Consensus 2 e~v~~~~l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV~--kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg 79 (1097)
+++++.+++. . +.|+||+++|+|+|.|.||+|+ ||.-.+... |.+++|+..|..+++++|
T Consensus 15 N~~L~~~~~k---i----E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~~e-----------~e~~~N~k~lq~af~k~g 76 (123)
T 2qjz_A 15 NESLQLNLTK---I----EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLE-----------HEYIQNFKILQAGFKRMG 76 (123)
T ss_dssp HHHHTCCCCC---G----GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSH-----------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCch---H----HHcCchHHHHHHHHHHccCCCcHHHhccCCCCh-----------HHHHHHHHHHHHHHHHcC
Confidence 4566777742 2 4599999999999999999998 666466555 999999999999999999
Q ss_pred CC-ceecCcccccCChhhHHHHHHHHhhhhhhhccC
Q 001334 80 LL-TFEASDLEKGGSSSKVVDCILCLKGYYEWKQAG 114 (1097)
Q Consensus 80 ~~-lFet~DL~e~kn~~kVv~cLlaLks~~~~K~~G 114 (1097)
++ .++...|-.|+ +.-=++=|.-++.|+.....|
T Consensus 77 V~k~i~v~kLvkgk-~qdnleflqW~k~f~d~n~~~ 111 (123)
T 2qjz_A 77 VDKIIPVDKLVKGK-FQDNFEFVQWFKKFFDANYDG 111 (123)
T ss_dssp CCCCCCHHHHTTCC-HHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCccCHHHHHcCC-chhHHHHHHHHHHHHHHcCCC
Confidence 99 77777788776 333445566677777765443
No 48
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.8e-07 Score=94.70 Aligned_cols=83 Identities=23% Similarity=0.361 Sum_probs=66.8
Q ss_pred HHhHhHHHHHHHHhhhCCCCcc--ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC-ceecCcccccCChhh
Q 001334 20 LALRNGLILCNVLNKVNPGAVL--KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL-TFEASDLEKGGSSSK 96 (1097)
Q Consensus 20 ~~LrDGvILC~L~N~l~PgsV~--kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~-lFet~DL~e~kn~~k 96 (1097)
+.|+||+++|+|+|.|.||+|+ ||.-.+... |.+++|+..|..+++++|++ .++...|-.|+- .-
T Consensus 43 E~L~~GaayCQLmd~L~PgsV~l~KVkf~a~~e-----------~e~~~N~k~lQ~af~k~gV~k~ipV~kLvkgk~-qd 110 (159)
T 1wyo_A 43 EQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLE-----------HEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKF-QD 110 (159)
T ss_dssp GGGGGCHHHHHHHHHHSTTSSCTTSCCTTCCSS-----------HHHHHHHHHHHHHHHHHTCCCCCCHHHHTTTCS-HH
T ss_pred hhcCccHHHHHHHHHHccCCCcHhhhccCCCCh-----------HHHHHHHHHHHHHHHHcCCCCccCHHHHhcCCc-hh
Confidence 3589999999999999999998 666466555 99999999999999999999 788888888773 33
Q ss_pred HHHHHHHHhhhhhhhccC
Q 001334 97 VVDCILCLKGYYEWKQAG 114 (1097)
Q Consensus 97 Vv~cLlaLks~~~~K~~G 114 (1097)
=++-|.-++.|++....|
T Consensus 111 NlEFlqWfk~f~d~n~~~ 128 (159)
T 1wyo_A 111 NFEFIQWFKKFFDANYDG 128 (159)
T ss_dssp HHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 445566677777765544
No 49
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=98.24 E-value=3.3e-07 Score=108.12 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=62.5
Q ss_pred CCCCCCHHHHHHHhHhHHHHHHHHhhhCCCCcc-ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCC---Ccee
Q 001334 9 LPKEPSEEEFRLALRNGLILCNVLNKVNPGAVL-KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQL---LTFE 84 (1097)
Q Consensus 9 l~~~~s~edf~~~LrDGvILC~L~N~l~PgsV~-kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~---~lFe 84 (1097)
+|.++...||.+.|+||++||+|+|.+.|++|. +.++.|.. +.+...|+++|||..||.+++.+|+ ..|.
T Consensus 35 lpi~~~v~dl~~dL~DG~~L~~Lie~l~~~~i~~~~i~~~~~------~~~~~~~~~~eNi~~~L~~~k~~g~~~l~~i~ 108 (513)
T 1rt8_A 35 VPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRN------NKPLDNFKCIENNNVVINSAKAMGGISITNIG 108 (513)
T ss_dssp CSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---------CCCHHHHHHHHHHHHHHHHHHSSCCCSSCC
T ss_pred CCCCCchHHHHHHhhcHHHHHHHHHHHcCCCcchhhcCCccc------cCcccHHHHHHHHHHHHHHHHHcCCCccCCcC
Confidence 455667789999999999999999999999985 44443311 1123459999999999999999876 3799
Q ss_pred cCcccccCC
Q 001334 85 ASDLEKGGS 93 (1097)
Q Consensus 85 t~DL~e~kn 93 (1097)
+.||++|..
T Consensus 109 ~~DI~dg~~ 117 (513)
T 1rt8_A 109 AGDILEGRE 117 (513)
T ss_dssp HHHHHTTCH
T ss_pred HHhhhcCCH
Confidence 999999874
No 50
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=98.24 E-value=2e-05 Score=87.09 Aligned_cols=290 Identities=16% Similarity=0.238 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCEEEEEEeCCCCCC
Q 001334 302 HQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQKVLEENRVLYNQVQDLKGTIRVYCRVRPFLPG 381 (1097)
Q Consensus 302 ~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~err~L~N~lqelKGnIRV~cRVRP~~~~ 381 (1097)
..++++.++.+..+++.++....+.|.+...+++. +...||+|-|.+.|+||.||+|+=+-.-.
T Consensus 8 ~~~e~~~~~~~~~~vq~kA~~~E~~Yn~~~dKmeq--------------E~lrRRkLENSIdElKG~IRcFAYi~~~~-- 71 (333)
T 4etp_B 8 LEKEIAALEKEIAALEKEISKQEKFYNDTYNTVCK--------------ELLRSRRLENSIIEQKGTMRVYAYVMEQN-- 71 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHTCCEEEEEECCSS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhhHHHhcCcEEEEEEECccc--
Confidence 44555666666666665555554444444333322 23358999999999999999999987622
Q ss_pred CCCCCCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCC--ChHHHHhhhhhhHhhhc-CCcceeEEeeccCCCCc
Q 001334 382 QSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNV--SQEQIYVDTQPLVRSVL-DGFNVCIFAYGQTGSGK 458 (1097)
Q Consensus 382 E~~~~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~a--tQeeVF~ev~PLV~svL-dGyNvcIfAYGQTGSGK 458 (1097)
-+..+.+.-.+..|. +. ...+.|.|++|+.... .+..+|++.+..++.|+ .+.|+.||..|+.-
T Consensus 72 ---~p~~~~idY~~~~It--~~-----~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~~--- 138 (333)
T 4etp_B 72 ---LPENLLFDYENGVIT--QG-----LSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTTP--- 138 (333)
T ss_dssp ---CCSSCEEETTTTEEE--C-------CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESSC---
T ss_pred ---CCccEEEecccceEe--ec-----CCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCCC---
Confidence 222344444444543 11 1357899999997776 56667788999999999 99999999988541
Q ss_pred ceeecCCCCCcccccCchHHHHHHHHHHhhhcCC--ceEEEEEEEEEEEecce-eeeccCCCCCCc----ccceecccCC
Q 001334 459 TYTMSGPDLTAEETWGVNYRALRDLFQISNTRGD--MIKYEVGVQMIEIYNEQ-VRDLLVSDGSNR----RLDIRNTAQA 531 (1097)
Q Consensus 459 TyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~--~~~y~V~VS~lEIYNE~-V~DLL~~~~~~~----~l~Ir~~~~~ 531 (1097)
|+. .-..|+..+..... .+.|.++++|+.+-++. ..|||.+..... .+.+.+.
T Consensus 139 --------------w~~---Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~~~~~~~I~lkiee~--- 198 (333)
T 4etp_B 139 --------------HGS---LRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEKH--- 198 (333)
T ss_dssp --------------CCH---HHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC----------CEEETT---
T ss_pred --------------cHH---HHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccccccCCCCceEEeecc---
Confidence 111 22333333332200 26899999999988877 799998753222 2222221
Q ss_pred CCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeec-cC--ceeeeeEEEeecCCCcc
Q 001334 532 NGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELV-TG--SILKGCLHLVDLAGSER 608 (1097)
Q Consensus 532 ~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~-~g--~~~~skL~LVDLAGSER 608 (1097)
.+.+ +-+.+.+.+..+.+.++.. ..+.-+- -...-.|+.+.+...+.. .+ ....-..+||.+-+..
T Consensus 199 -sI~l-dS~~i~i~~~~~~l~~~~k-------l~~~~~~-~~~GI~IlKfqf~~~~~~~~~n~~~~~~~fYFiEi~~~~- 267 (333)
T 4etp_B 199 -SISL-DSKLVIIENGLEDLPLNFS-------ADEHPNL-PHSGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLK- 267 (333)
T ss_dssp -EEEC-CSCCEEESSGGGGSCTTSS-------CCC---------CEEEEEEEEECC--------CCCEEEEEEEECSHH-
T ss_pred -eEee-cceEEEeccccccchhhhc-------cccCCCC-CCCCceEEEEEEEecCcccccccCCcceeEEEEEecChh-
Confidence 1211 3344555554432222210 0000000 112345677777655432 11 1223468888876533
Q ss_pred cccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEEEecCCCCC
Q 001334 609 VDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHN 678 (1097)
Q Consensus 609 ~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMIa~ISP~~~ 678 (1097)
....|.++|.-= -.-.|+++-+|+--| -..|.++++++.-...
T Consensus 268 -------------------ti~~l~~~i~~~-------~~~~spi~~ilkkLl-~~TKS~flfnl~~~~~ 310 (333)
T 4etp_B 268 -------------------SIEQFDKSIFKK-------ESAETPIALVLKKLI-SDTKSFFLLNLNDSKN 310 (333)
T ss_dssp -------------------HHHHHHSCC-----------CCCCHHHHHHHHHH-HHSBCEEEEEECCSTT
T ss_pred -------------------HHHHHHhhcCcc-------cccCCCHHHHHHHHH-hhCcceEEEEcCCcch
Confidence 123333333211 133567777777554 3567899999977654
No 51
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=98.11 E-value=9.1e-07 Score=95.71 Aligned_cols=83 Identities=14% Similarity=0.184 Sum_probs=64.3
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCCc--eecCcccc
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLLT--FEASDLEK 90 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~l--Fet~DL~e 90 (1097)
+...+|...|+||++||+|+|.+.|+.|+++ ..+.+. |+++|||..||.+++.+|+.+ ..+.|+++
T Consensus 45 ~~v~~l~~dl~DGv~L~~Lle~l~~~~v~k~-~~~~~~-----------~~~~eNi~~aL~~~k~~gv~lv~I~~~DIvd 112 (254)
T 1wku_A 45 TQIENIEEDFRNGLKLMLLLEVISGERLPRP-DKGKMR-----------FHKIANVNKALDFIASKGVKLVSIGAEEIVD 112 (254)
T ss_dssp CCCSCTTTTTTTSHHHHHHHHHHHCSCCCCC-CSCCSH-----------HHHHHHHHHHHHHHHTTTCCCCSCCHHHHHH
T ss_pred CCccCHHHHccCHHHHHHHHHHhCcCCCCCC-CCCccH-----------HHHHHhHHHHHHHHHHcCCCccCCCHHHHhc
Confidence 3456799999999999999999999999764 334444 999999999999999998774 58999998
Q ss_pred cCChhhHHHHHHHHhhhh
Q 001334 91 GGSSSKVVDCILCLKGYY 108 (1097)
Q Consensus 91 ~kn~~kVv~cLlaLks~~ 108 (1097)
| |...++--|..|-.++
T Consensus 113 G-~~kliLgLlW~li~~~ 129 (254)
T 1wku_A 113 G-NLKMTLGMIWTIILRF 129 (254)
T ss_dssp C-CHHHHHHHHHHHHHHH
T ss_pred c-chHHHHHHHHHHHHHH
Confidence 7 4444544444454433
No 52
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=97.97 E-value=1.6e-06 Score=93.28 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=64.1
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCc-cceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC--ceecCccc
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAV-LKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL--TFEASDLE 89 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV-~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~--lFet~DL~ 89 (1097)
+...||...|+||++||+|+|.+.|+.+ +++...|.+. |+++|||..||.+++.+|+. -..+.|++
T Consensus 38 ~~v~dl~~dL~DGv~L~~Lle~L~~~~~~~~~n~~~~~~-----------~~~~eNv~~aL~~~k~~g~~lv~I~~~DIv 106 (245)
T 2wa7_A 38 KRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFR-----------QMQLENVSVALEFLDRESIKLVSIDSKAIV 106 (245)
T ss_dssp CCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSH-----------HHHHHHHHHHHHHHHHTTCCCCSCCHHHHH
T ss_pred CCccCHHHHcccHHHHHHHHHHHcCCCCchhcCCCCCcH-----------HHHHHHHHHHHHHHHHcCCcccCCCHHHhh
Confidence 3445788899999999999999999998 4555555555 89999999999999999777 46899999
Q ss_pred ccCChhhHHHHHHHHhhhh
Q 001334 90 KGGSSSKVVDCILCLKGYY 108 (1097)
Q Consensus 90 e~kn~~kVv~cLlaLks~~ 108 (1097)
+|. ...++--|..|-.++
T Consensus 107 dG~-~kliLgLlW~li~~~ 124 (245)
T 2wa7_A 107 DGN-LKLILGLVWTLILHY 124 (245)
T ss_dssp TTC-HHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHHH
Confidence 986 223444444444433
No 53
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=97.76 E-value=9.6e-06 Score=87.16 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=56.2
Q ss_pred CHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC--ceecCccccc
Q 001334 14 SEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL--TFEASDLEKG 91 (1097)
Q Consensus 14 s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~--lFet~DL~e~ 91 (1097)
...||...|+||++||+|+|.|.|+.+++. .+.+. |+++|||..||.+++.+|+. -+.+.|+++|
T Consensus 36 ~v~dl~~dl~DG~~L~~Lle~l~~~~~~~~--~~~~~-----------~~~~eNv~~aL~~~k~~g~~l~~I~~~DIvdg 102 (246)
T 1dxx_A 36 HIENLFSDLQDGRRLLDLLEGLTGQKLPKE--KGSTR-----------VHALNNVNKALRVLQNNNVDLVNIGSTDIVDG 102 (246)
T ss_dssp CCSCTTTTTTTSHHHHHHHHHHHSCCCCCC--CCSSH-----------HHHHHHHHHHHHHHHHTTCCCTTCCHHHHHTT
T ss_pred CccCHHHHhCcHHHHHHHHHHHcCCcCCCC--CCccH-----------HHHHHHHHHHHHHHHHcCCccccCCHHHhhcc
Confidence 456788889999999999999999988653 23333 99999999999999999776 5899999998
Q ss_pred C
Q 001334 92 G 92 (1097)
Q Consensus 92 k 92 (1097)
.
T Consensus 103 ~ 103 (246)
T 1dxx_A 103 N 103 (246)
T ss_dssp C
T ss_pred c
Confidence 5
No 54
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=97.75 E-value=9.4e-06 Score=87.05 Aligned_cols=84 Identities=13% Similarity=0.202 Sum_probs=63.3
Q ss_pred CCCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC--ceecCccc
Q 001334 12 EPSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL--TFEASDLE 89 (1097)
Q Consensus 12 ~~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~--lFet~DL~ 89 (1097)
++...||...|+||++||+|+|.+.|+.+++. .+.+. |+++|||..||.+++.+|+. -..+.|++
T Consensus 34 ~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~~--~~~~~-----------~~~~eNv~~aL~~~k~~g~~l~~I~~~DIv 100 (245)
T 1sh5_A 34 QRHISDLYEDLRDGHNLISLLEVLSGDSLPRE--KGRMR-----------FHKLQNVQIALDYLRHRQVKLVNIRNDDIA 100 (245)
T ss_dssp CCCCSCTTTTTTTSHHHHHHHHHHHCCCCCCC--CCCSH-----------HHHHHHHHHHHHHHHHTTCCCCSCCHHHHH
T ss_pred CCCccchHhhccCHHHHHHHHHHhcCccccCC--CCcch-----------HHHHHhHHHHHHHHHHcCCcccCCChHhhh
Confidence 35567899999999999999999999999742 23333 99999999999999999776 35888999
Q ss_pred ccCChhhHHHHHHHHhhhhh
Q 001334 90 KGGSSSKVVDCILCLKGYYE 109 (1097)
Q Consensus 90 e~kn~~kVv~cLlaLks~~~ 109 (1097)
+|. ...++--|..|-.++.
T Consensus 101 dg~-~k~iLgLlw~li~~~~ 119 (245)
T 1sh5_A 101 DGN-PKLTLGLIWTIILHFQ 119 (245)
T ss_dssp TTC-HHHHHHHHHHHHHHHT
T ss_pred ccc-HHHHHHHHHHHHHhhc
Confidence 885 2334444444444333
No 55
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=97.67 E-value=1.7e-05 Score=87.82 Aligned_cols=84 Identities=13% Similarity=0.190 Sum_probs=66.1
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC--ceecCcccc
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL--TFEASDLEK 90 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~--lFet~DL~e 90 (1097)
+...||...|+||++||+|+|.|.|+.+++. .+.+. |+++|||..+|++++..|+. -..+.|+.+
T Consensus 91 ~~V~dL~~DL~DGvvL~~Lle~L~~~~l~~~--~~~~r-----------~~kleNvn~aL~~lk~~gv~lv~I~~~DIvd 157 (296)
T 3f7p_A 91 RHISDLYEDLRDGHNLISLLEVLSGDSLPRE--KGRMR-----------FHKLQNVQIALDYLRHRQVKLVNIRNDDIAD 157 (296)
T ss_dssp CCCSCTTTTTTTSHHHHHHHHHHHCCCCCCC--CCSSH-----------HHHHHHHHHHHHHHHHTTCCCTTCCHHHHHT
T ss_pred CCcccHHHHHhhHHHHHHHHHHhcCCccccc--CCcCh-----------hhhhhhHHHHHHHHHHhCccccCCChhhhhc
Confidence 3456788899999999999999999999762 34344 99999999999999998776 467889998
Q ss_pred cCChhhHHHHHHHHhhhhhh
Q 001334 91 GGSSSKVVDCILCLKGYYEW 110 (1097)
Q Consensus 91 ~kn~~kVv~cLlaLks~~~~ 110 (1097)
| |...++--|..|-.++..
T Consensus 158 G-n~kliLgLlW~Li~~~~i 176 (296)
T 3f7p_A 158 G-NPKLTLGLIWTIILHFQI 176 (296)
T ss_dssp T-CHHHHHHHHHHHHHHHTT
T ss_pred c-chHHHHHHHHHhhcccce
Confidence 8 555666666666555443
No 56
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=97.58 E-value=5.1e-05 Score=89.55 Aligned_cols=91 Identities=23% Similarity=0.315 Sum_probs=66.0
Q ss_pred CCCHHHHHHHhHhHHHHHHHHhhhCCCCcc--ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC--ceecCc
Q 001334 12 EPSEEEFRLALRNGLILCNVLNKVNPGAVL--KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL--TFEASD 87 (1097)
Q Consensus 12 ~~s~edf~~~LrDGvILC~L~N~l~PgsV~--kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~--lFet~D 87 (1097)
++...||.+.|+||++||+|++++.||.|. ++...|.. +.....|+++|||..+|.+++.+|+. -+.+.|
T Consensus 300 ~~~v~~l~~DL~DG~~L~~Lle~l~~g~v~~~~~~~~p~~------~~~~~r~~~~eNv~~al~~~~~~gv~lv~i~~~D 373 (513)
T 1rt8_A 300 TPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPAS------GDEMMRFKAVENCNYAVDLGKNQGFSLVGIQGAD 373 (513)
T ss_dssp SSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTT------SCCCCHHHHHHHHHHHHHHHHHTTCCCTTCCHHH
T ss_pred CCCccCHHHHHhhHHHHHHHHHHhCCCCcchhhhcCCccc------ccccchHHHHHHHHHHHHHHHHcCceeeccchhh
Confidence 345678999999999999999999999873 44443421 11123499999999999999999777 589999
Q ss_pred ccccCChhhHHHHHHHHhhhhh
Q 001334 88 LEKGGSSSKVVDCILCLKGYYE 109 (1097)
Q Consensus 88 L~e~kn~~kVv~cLlaLks~~~ 109 (1097)
+++|. ...++--|-.|-.++.
T Consensus 374 Ivdg~-~~~~LgLlW~li~~~~ 394 (513)
T 1rt8_A 374 ITDGS-RTLTLALVWQMMRMNI 394 (513)
T ss_dssp HHTTC-HHHHHHHHHHHHHHHH
T ss_pred hhcCC-chhhHHHHHHHHHHHH
Confidence 99986 3334444444444443
No 57
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=97.38 E-value=7e-05 Score=81.99 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=66.3
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCc-cceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCCc--eecCccc
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAV-LKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLLT--FEASDLE 89 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV-~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~l--Fet~DL~ 89 (1097)
+...||...|+||++||+|++.|.|+.+ +++...|.+. |+.+||+..+|.+++..|+.+ ..+.|+.
T Consensus 65 ~~V~dL~~DL~DGv~L~~Lle~Ls~~~l~~~~~~~p~~r-----------~~kleNv~~aL~~lk~~gv~lvnI~~~DIv 133 (272)
T 3hoc_A 65 KRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFR-----------QMQLENVSVALEFLDRESIKLVSIDSKAIV 133 (272)
T ss_dssp CCCSCTTTTTTTSHHHHHHHHHHHTSCCSSCCCSSCCSH-----------HHHHHHHHHHHHHHHHTTCCCSSCCHHHHH
T ss_pred CCcccHHHHHhhHHHHHHHHHHHcCCccccccCCCCccH-----------HHHHHHHHHHHHHHHHcCCcccccccchhh
Confidence 4556789999999999999999999998 5655556555 899999999999999988774 5788988
Q ss_pred ccCChhhHHHHHHHHhhhhh
Q 001334 90 KGGSSSKVVDCILCLKGYYE 109 (1097)
Q Consensus 90 e~kn~~kVv~cLlaLks~~~ 109 (1097)
+|. ...++--|..|-.++.
T Consensus 134 dGn-~kliLgLlW~Li~~~~ 152 (272)
T 3hoc_A 134 DGN-LKLILGLIWTLILHYS 152 (272)
T ss_dssp TTC-HHHHHHHHHHHHHHHH
T ss_pred cCC-HHHHHHHHHHHHHHHh
Confidence 874 4455555555655544
No 58
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=96.94 E-value=0.00023 Score=69.98 Aligned_cols=68 Identities=15% Similarity=0.059 Sum_probs=57.1
Q ss_pred CHHHHHHHhHhHHHHHHHHhhhCCCCcc--ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC--ceecCccc
Q 001334 14 SEEEFRLALRNGLILCNVLNKVNPGAVL--KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL--TFEASDLE 89 (1097)
Q Consensus 14 s~edf~~~LrDGvILC~L~N~l~PgsV~--kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~--lFet~DL~ 89 (1097)
...||..-|+||++||+|++.+.|+.++ ++...|.+. |+.+||+..-|.+++..|+. -..+.|+.
T Consensus 41 ~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~~r-----------~~kieNv~~aL~~lk~~gi~l~~I~~~DIv 109 (131)
T 2vzc_A 41 EVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSF-----------EQKVLNVSFAFELMQDGGLEKPKPRPEDIV 109 (131)
T ss_dssp CCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCCSH-----------HHHHHHHHHHHHHHHHTTCCCCSSCHHHHH
T ss_pred cccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCCcH-----------HHHHHHHHHHHHHHHHcCCCcCCCCHHHhh
Confidence 3567888999999999999999999886 555556544 99999999999999998776 46888999
Q ss_pred ccC
Q 001334 90 KGG 92 (1097)
Q Consensus 90 e~k 92 (1097)
+|.
T Consensus 110 dGn 112 (131)
T 2vzc_A 110 NCD 112 (131)
T ss_dssp TTC
T ss_pred CCC
Confidence 886
No 59
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=96.90 E-value=0.0003 Score=87.05 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=61.5
Q ss_pred CHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCCc--eecCccccc
Q 001334 14 SEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLLT--FEASDLEKG 91 (1097)
Q Consensus 14 s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~l--Fet~DL~e~ 91 (1097)
...+|...|+||++||+|+|.|.|+.|+++ ..+.+. |++++||..+|.+++..|+.+ ..+.|+.+|
T Consensus 27 ~v~~l~~dl~DG~~L~~l~e~l~~~~~~~~-~~~~~~-----------~~~~eN~~~~l~~~~~~g~~~~~i~~~di~~g 94 (863)
T 1sjj_A 27 QIENIEEDFRDGLKLMLLLEVISGERLAKP-ERGKMR-----------VHKISNVNKALDFIASKGVKLVSIGAEEIVDG 94 (863)
T ss_dssp CCCCCSSTTSSCHHHHHHHHHTSCCCCCCS-CCCSSH-----------HHHHHHHHHHHHHHHHTTCCCTTCCSHHHHTT
T ss_pred CccCHHHHhcCHHHHHHHHHHhCCCceeCC-CCCccH-----------HHHHHHHHHHHHHHHHcCCccCCCChHHhhcC
Confidence 345778889999999999999999999763 334333 999999999999999998774 678899988
Q ss_pred CChhhHHHHHHHHhh
Q 001334 92 GSSSKVVDCILCLKG 106 (1097)
Q Consensus 92 kn~~kVv~cLlaLks 106 (1097)
|...++--|..|-.
T Consensus 95 -~~~~~l~l~w~l~~ 108 (863)
T 1sjj_A 95 -NVKMTLGMIWTIIL 108 (863)
T ss_dssp -CHHHHHHHHHHHHS
T ss_pred -CHHHHHHHHHHHHH
Confidence 34444444444433
No 60
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=96.42 E-value=0.0017 Score=76.57 Aligned_cols=87 Identities=22% Similarity=0.329 Sum_probs=63.1
Q ss_pred CCCHHHHHHHhHhHHHHHHHHhhhCCCCcc-ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCCc--eecCcc
Q 001334 12 EPSEEEFRLALRNGLILCNVLNKVNPGAVL-KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLLT--FEASDL 88 (1097)
Q Consensus 12 ~~s~edf~~~LrDGvILC~L~N~l~PgsV~-kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~l--Fet~DL 88 (1097)
++...||..-|+||++||+|++.+.|+.++ +.+..|. ....|+++|||..+|.+++..|+.+ ..+.|+
T Consensus 291 ~~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~---------~~~r~~~leNv~~aL~~~k~~~v~l~~I~~~dI 361 (506)
T 1pxy_A 291 DSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPP---------IKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDI 361 (506)
T ss_dssp SSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSS---------CCCHHHHHHHHHHHHHHHHHTTCCCCSCCHHHH
T ss_pred CCCcccHHHHHHhHHHHHHHHHHHcCCccccccccCCc---------cccHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 356678999999999999999999999885 3333320 0123999999999999999987774 688899
Q ss_pred cccCChhhHHHHHHHHhhhh
Q 001334 89 EKGGSSSKVVDCILCLKGYY 108 (1097)
Q Consensus 89 ~e~kn~~kVv~cLlaLks~~ 108 (1097)
.+|. ...++--|..|-.|.
T Consensus 362 vdg~-~kl~L~Liw~lir~~ 380 (506)
T 1pxy_A 362 VQGN-KKLILGLLWQLMRFH 380 (506)
T ss_dssp HTTC-HHHHHHHHHHHHHHH
T ss_pred hcCC-HHHHHHHHHHHHHHh
Confidence 9875 333444444443333
No 61
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=96.31 E-value=0.0017 Score=63.45 Aligned_cols=67 Identities=12% Similarity=0.265 Sum_probs=53.9
Q ss_pred HHHHH-HHhHhHHHHHHHHhhhCCCCcc-ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCCce-ecCccccc
Q 001334 15 EEEFR-LALRNGLILCNVLNKVNPGAVL-KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLLTF-EASDLEKG 91 (1097)
Q Consensus 15 ~edf~-~~LrDGvILC~L~N~l~PgsV~-kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~lF-et~DL~e~ 91 (1097)
..+|. ..|+||+.+|.|++.|+|+.|. ..+..+. ++....++|....+..++++|++.| .+.|+.++
T Consensus 29 I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~~----------L~~~d~~~Na~~ais~ArklG~~~~l~pEDIve~ 98 (124)
T 1wjo_A 29 IQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGN----------LTEDDKHNNAKYAVSMARRIGARVYALPEDLVEV 98 (124)
T ss_dssp CSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSS----------CCHHHHHHHHHHHHHHHHHTCCSCCCCHHHHHHT
T ss_pred cCCCCcchhhhhHHHHHHHHHHCcCccCHHHhcCCC----------CCHHHHHHHHHHHHHHHHHcCCCcccCHHHHhcC
Confidence 45688 8899999999999999999984 2222221 2236788999999999999999977 78899987
No 62
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=95.82 E-value=0.0041 Score=70.15 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=65.9
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCccc-eecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC--ceecCccc
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAVLK-VVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL--TFEASDLE 89 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV~k-v~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~--lFet~DL~ 89 (1097)
+...||..-|+||++||+|++.|.+..+++ +...|.+. ++.+||+..-|++++..|+. -..+.|+.
T Consensus 35 ~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~p~~r-----------~~k~eNv~~al~~~~~~g~~lv~i~~~DIv 103 (347)
T 4b7l_A 35 KRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFR-----------QMQLENVSVALEFLDRESIKLVSIDSKAIV 103 (347)
T ss_dssp CCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSH-----------HHHHHHHHHHHHHHHHTTCCCSSCCHHHHH
T ss_pred CCcCCHHHHhcCHHHHHHHHHHHcCCccChhhcCCcccH-----------HHHHHHHHHHHHHHHHhccccCCCCcchhh
Confidence 345678888999999999999999988864 45566555 88999999999999998666 56888999
Q ss_pred ccCChhhHHHHHHHHhhhhh
Q 001334 90 KGGSSSKVVDCILCLKGYYE 109 (1097)
Q Consensus 90 e~kn~~kVv~cLlaLks~~~ 109 (1097)
+|. ...++--|-.|-.++.
T Consensus 104 dGn-~~liLgLiW~li~~~~ 122 (347)
T 4b7l_A 104 DGN-LKLILGLVWTLILHYS 122 (347)
T ss_dssp TTC-HHHHHHHHHHHHHHHH
T ss_pred cCC-HhhHHHHHHHHHHHHh
Confidence 864 5556666666655544
No 63
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.79 E-value=0.015 Score=56.16 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=60.9
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC-ceecCccccc
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL-TFEASDLEKG 91 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~-lFet~DL~e~ 91 (1097)
....+|-...+||.++|.|++.++|+.|..-.-.+ -...+|...-+..++++|++ +.++.|+.++
T Consensus 28 v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~--------------~~~~~n~~~af~~a~~LGi~~ll~peDi~~~ 93 (119)
T 2d89_A 28 VKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNP--------------QDIKENNKKAYDGFASIGISRLLEPSDMVLL 93 (119)
T ss_dssp CCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCT--------------TCSHHHHHHHHHHHHHHTCCCCSCHHHHHHS
T ss_pred CCCCCccccccccHHHHHHHHHHCcCcCChhhhcc--------------cCHHHHHHHHHHHHHHhCCCcccCHHHHhcc
Confidence 34567889999999999999999999884111111 12357887777777889999 5688999765
Q ss_pred --CChhhHHHHHHHHhhhhhhhc
Q 001334 92 --GSSSKVVDCILCLKGYYEWKQ 112 (1097)
Q Consensus 92 --kn~~kVv~cLlaLks~~~~K~ 112 (1097)
-+-..|+.-|..|-.++...+
T Consensus 94 ~~pD~ksvmtYvs~l~~~f~~~~ 116 (119)
T 2d89_A 94 AIPDKLTVMTYLYQIRAHFSSGP 116 (119)
T ss_dssp SSCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCcHHHHHHHHHHHHHHccCCC
Confidence 366667777776655554433
No 64
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=94.22 E-value=0.022 Score=54.82 Aligned_cols=81 Identities=12% Similarity=0.272 Sum_probs=58.0
Q ss_pred CHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHh-cCCC-ceecCccccc
Q 001334 14 SEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKD-MQLL-TFEASDLEKG 91 (1097)
Q Consensus 14 s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~-lg~~-lFet~DL~e~ 91 (1097)
...+|-...+||.++|.|++.++|+.|..-. +..-...+|...=+..+++ +|++ +.++.|+-.+
T Consensus 27 ~v~nFs~sw~dG~af~aLih~~~P~lid~~~--------------l~~~~~~~n~~~af~~Ae~~lgi~~lL~peD~~~~ 92 (116)
T 1wyl_A 27 HVSDLSSSWADGLALCALVYRLQPGLLEPSE--------------LQGLGALEATAWALKVAENELGITPVVSAQAVVAG 92 (116)
T ss_dssp CCSCTTTTTTSSHHHHHHHHHHCTTSCCCSS--------------GGGCCHHHHHHHHHHHHHHTTCCCCCSCHHHHHHT
T ss_pred CCCCccccccccHHHHHHHHHHCcCCCCHHH--------------hccCCHHHHHHHHHHHHHHHcCCccccCHHHHhcC
Confidence 4567888899999999999999999884111 1112356888887887776 8999 6688999877
Q ss_pred CChhhHHHHHHHHhhhh
Q 001334 92 GSSSKVVDCILCLKGYY 108 (1097)
Q Consensus 92 kn~~kVv~cLlaLks~~ 108 (1097)
-+...|+.-|..|-.++
T Consensus 93 ~d~ksv~tYvs~l~~~~ 109 (116)
T 1wyl_A 93 SDPLGLIAYLSHFHSAF 109 (116)
T ss_dssp SCHHHHHHHHHHHHHHS
T ss_pred CchhHHHHHHHHHHHHc
Confidence 56655666665554433
No 65
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.39 E-value=0.016 Score=57.70 Aligned_cols=51 Identities=20% Similarity=0.146 Sum_probs=38.6
Q ss_pred eEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
.++||.....+..|.+++..+..++.++--.....++-||++|+|||+.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 357888766666788999888888877653334556779999999999873
No 66
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=92.13 E-value=0.06 Score=52.70 Aligned_cols=85 Identities=12% Similarity=0.094 Sum_probs=60.9
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHh-cCCC-ceecCcccc
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKD-MQLL-TFEASDLEK 90 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~-lg~~-lFet~DL~e 90 (1097)
....||-...+||.++|.|++.++|+.|..-.-. .-...+|+..-+..+++ +|++ +.++.|+-+
T Consensus 26 v~V~nFs~sw~DG~af~aLih~~~P~lid~~~l~--------------~~~~~~n~~~af~~Ae~~lgip~lL~peD~v~ 91 (128)
T 2d87_A 26 VDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLS--------------PQNRRQNFEVAFSSAETHADCPQLLDTEDMVR 91 (128)
T ss_dssp CCCSCTTTTTTSSHHHHHHHHHHCTTTSCSTTSC--------------SSCHHHHHHHHHHHHHHHHCCCCCSCHHHHHH
T ss_pred CCCCCccccccccHHHHHHHHHHCcCcCCHHHcC--------------ccCHHHHHHHHHHHHHHcCCCCcccCHHHHhc
Confidence 3456788899999999999999999988321101 12356899888888877 6998 668889865
Q ss_pred cC--ChhhHHHHHHHHhhhhhhh
Q 001334 91 GG--SSSKVVDCILCLKGYYEWK 111 (1097)
Q Consensus 91 ~k--n~~kVv~cLlaLks~~~~K 111 (1097)
+. +-..|+.-|..|-.++..+
T Consensus 92 ~~~pD~ksvmtYvs~l~~~~~~~ 114 (128)
T 2d87_A 92 LREPDWKCVYTYIQEFYRCLVQK 114 (128)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHHhhc
Confidence 53 4566777777675555443
No 67
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=91.94 E-value=0.1 Score=50.58 Aligned_cols=82 Identities=9% Similarity=0.176 Sum_probs=57.7
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHH-hcCCC-ceecCcccc
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVK-DMQLL-TFEASDLEK 90 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~-~lg~~-lFet~DL~e 90 (1097)
....+|-...+||.++|.|++.++|+.|..-.-.+ -...+|+..-+..++ ++|++ +.++.|+-.
T Consensus 28 v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~~--------------~~~~~n~~~af~~Ae~~lgi~~lL~peD~~~ 93 (121)
T 2d88_A 28 VNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDE--------------QNVEKNNQLAFDIAEKELGISPIMTGKEMAS 93 (121)
T ss_dssp CCCCCSSHHHHTSHHHHHHHHHHCTTTSCTTTSCT--------------TCHHHHHHHHHHHHHHHTCCCCSSCHHHHHH
T ss_pred CCCCCchhhccccHHHHHHHHHhCcCcCCHHHcCc--------------cCHHHHHHHHHHHHHHHcCCCCcCCHHHHhc
Confidence 34567888999999999999999999873111011 124688888888776 58999 568889875
Q ss_pred c--CChhhHHHHHHHHhhhh
Q 001334 91 G--GSSSKVVDCILCLKGYY 108 (1097)
Q Consensus 91 ~--kn~~kVv~cLlaLks~~ 108 (1097)
+ -+-..|+.-|..|-.++
T Consensus 94 ~~~pD~ksimtYvs~l~~~~ 113 (121)
T 2d88_A 94 VGEPDKLSMVMYLTQFYEMF 113 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHc
Confidence 3 45556666666664433
No 68
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.66 E-value=0.041 Score=55.48 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=36.3
Q ss_pred eEeeceeeCCCCChHHHHhhhhhhHhhhcCCcc-eeEEeeccCCCCcceee
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFN-VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyN-vcIfAYGQTGSGKTyTM 462 (1097)
.++||.+......+..++..+..++...-.++. ..|+-||++|+|||+.+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 456777666555677788776666666544432 67888999999999987
No 69
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=90.30 E-value=0.18 Score=49.20 Aligned_cols=82 Identities=13% Similarity=0.257 Sum_probs=56.3
Q ss_pred CHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHH-hcCCC-ceecCccccc
Q 001334 14 SEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVK-DMQLL-TFEASDLEKG 91 (1097)
Q Consensus 14 s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~-~lg~~-lFet~DL~e~ 91 (1097)
...||-...+||.++|.|++.++|+.|..-.-.+ -...+|+..=+..++ ++|++ ++++.|+..+
T Consensus 27 ~V~nFs~sw~DG~Af~aLih~~~P~lid~~~l~~--------------~~~~~n~~~af~~Ae~~Lgi~~ll~~eDv~~~ 92 (127)
T 1wyq_A 27 NVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKK--------------CNAHYNLQNAFNLAEKELGLTKLLDPEDVNVD 92 (127)
T ss_dssp CCSCSSTTSSSSHHHHHHHHHHCTTTCCTTTSCS--------------SCCHHHHHHHHHHHHHTTCCCCCSCTTTSCSS
T ss_pred CCCCCcccccccHHHHHHHHHHCcCcCCHHHhCc--------------CCHHHHHHHHHHHHHHHcCCCcccCHHHhccC
Confidence 4567888899999999999999999884111011 123578877777776 68999 6788898543
Q ss_pred -CChhhHHHHHHHHhhhhh
Q 001334 92 -GSSSKVVDCILCLKGYYE 109 (1097)
Q Consensus 92 -kn~~kVv~cLlaLks~~~ 109 (1097)
-+-..|+.-|..|-.++.
T Consensus 93 ~pDeksimtYvs~l~~~~~ 111 (127)
T 1wyq_A 93 QPDEKSIITYVATYYHYFS 111 (127)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhh
Confidence 344556666666644443
No 70
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=90.21 E-value=0.14 Score=55.16 Aligned_cols=82 Identities=12% Similarity=0.319 Sum_probs=59.1
Q ss_pred CHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHh-cCCC-ceecCccccc
Q 001334 14 SEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKD-MQLL-TFEASDLEKG 91 (1097)
Q Consensus 14 s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~-lg~~-lFet~DL~e~ 91 (1097)
...+|-..++||.++|.|++.++|+.|..-.-.+ -...+|...-+..+++ +|++ +..+.|+.++
T Consensus 160 ~v~nFs~s~~DG~a~~aLi~~~~P~~id~~~l~~--------------~~~~~n~~~a~~~A~~~lGi~~~l~peDiv~~ 225 (254)
T 1wku_A 160 NVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRK--------------DDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNT 225 (254)
T ss_dssp CCCSSSGGGTTSHHHHHHHHHHCTTSCCGGGCCT--------------TCHHHHHHHHHHHHHHHSCCCCCSCHHHHHHS
T ss_pred cCCCCccchhhHHHHHHHHHHHCCCcccccccCc--------------CCHHHHHHHHHHHHHHHcCCCCcCCHHHHhcc
Confidence 3567888899999999999999999884211011 2356899888888876 8999 5688999776
Q ss_pred C--ChhhHHHHHHHHhhhhh
Q 001334 92 G--SSSKVVDCILCLKGYYE 109 (1097)
Q Consensus 92 k--n~~kVv~cLlaLks~~~ 109 (1097)
. |-..|+.-|..|..++.
T Consensus 226 ~~pD~k~imtyva~l~~~~~ 245 (254)
T 1wku_A 226 PKPDEKAIMTYVSCFYHAFA 245 (254)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhh
Confidence 4 45666666666654443
No 71
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=89.95 E-value=0.14 Score=48.71 Aligned_cols=79 Identities=11% Similarity=0.200 Sum_probs=54.0
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHH-hcCCC-ceecCcccc
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVK-DMQLL-TFEASDLEK 90 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~-~lg~~-lFet~DL~e 90 (1097)
....||-...+||.++|.|++.++|+.|..-.-.+ -...+|+..=+..++ ++|+| +.++.|+-.
T Consensus 22 v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~~--------------~~~~~n~~~af~~Ae~~lgi~~ll~~eDv~~ 87 (109)
T 1bkr_A 22 VNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKK--------------SNAHYNLQNAFNLAEQHLGLTKLLDPEDISV 87 (109)
T ss_dssp CCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCT--------------TCHHHHHHHHHHHHHHHHCCCCCCCHHHHSS
T ss_pred CCCCCCcccccccHHHHHHHHHHCcCCCCHHHcCc--------------CCHHHHHHHHHHHHHHHcCCCccCCHHHccC
Confidence 34577889999999999999999999884111111 224578877777775 68999 668888754
Q ss_pred c-CChhhHHHHHHHHh
Q 001334 91 G-GSSSKVVDCILCLK 105 (1097)
Q Consensus 91 ~-kn~~kVv~cLlaLk 105 (1097)
+ -+-..|+.-|..|-
T Consensus 88 ~~pD~ksi~tYvs~~~ 103 (109)
T 1bkr_A 88 DHPDEKSIITYVVTYY 103 (109)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 3 23445555555553
No 72
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=89.75 E-value=0.58 Score=51.14 Aligned_cols=91 Identities=18% Similarity=0.326 Sum_probs=66.7
Q ss_pred CCCHHHHHHHh--------------HhHHHHHHHHhhhCCCCcc--ceecCchhhhhcccchhhhhhHHHhhHHHHHHHH
Q 001334 12 EPSEEEFRLAL--------------RNGLILCNVLNKVNPGAVL--KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAV 75 (1097)
Q Consensus 12 ~~s~edf~~~L--------------rDGvILC~L~N~l~PgsV~--kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac 75 (1097)
..|.-|+..|| .+|.+.|.+++.|.||+|+ ||.-.++.. +-|..|..-+-.+-
T Consensus 14 ~~sR~elL~WiN~~L~~~~~kiEel~tGaayCQlmd~l~P~~i~l~kVkf~a~~e-----------~e~i~N~k~LQ~~F 82 (268)
T 2r8u_A 14 NLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLE-----------HEYIQNFKILQAGF 82 (268)
T ss_dssp CCCHHHHHHHHHHHHTCCCCCGGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSH-----------HHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhcCCcchHHHcccchHHHHHHHHHccCCCchhhccCCCCCH-----------HHHHHHHHHHHHHH
Confidence 46777787776 7899999999999999998 554454444 67777777777778
Q ss_pred HhcCCC-ceecCcccccCChhhHHHHHHHHhhhhhhhccC
Q 001334 76 KDMQLL-TFEASDLEKGGSSSKVVDCILCLKGYYEWKQAG 114 (1097)
Q Consensus 76 ~~lg~~-lFet~DL~e~kn~~kVv~cLlaLks~~~~K~~G 114 (1097)
.+++++ .+....|..|+ +.-=++-|..++.|+.....|
T Consensus 83 ~k~~I~k~ipV~kLvkgk-~qDNlEFlqWfkkf~d~n~~~ 121 (268)
T 2r8u_A 83 KRMGVDKIIPVDKLVKGK-FQDNFEFVQWFKKFFDANYDG 121 (268)
T ss_dssp HHTTCCCCCCHHHHTTTC-HHHHHHHHHHHHHHHHHHCCC
T ss_pred HHcCCCCccCHHHHhccC-chhHHHHHHHHHHHHHHcCCC
Confidence 999998 55666666665 333455567778888776544
No 73
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.72 E-value=3 Score=48.31 Aligned_cols=78 Identities=23% Similarity=0.488 Sum_probs=46.6
Q ss_pred EeeceeeCCCCChHHHHhhh-hhhHh-hhcC--Cc--ceeEEeeccCCCCcceee--------------cCCCCCccccc
Q 001334 414 FLFNKVFAPNVSQEQIYVDT-QPLVR-SVLD--GF--NVCIFAYGQTGSGKTYTM--------------SGPDLTAEETW 473 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev-~PLV~-svLd--Gy--NvcIfAYGQTGSGKTyTM--------------~G~~~~~~e~~ 473 (1097)
-+||.|-|-+.--+++.+.+ .|+.. ..+. |. .-.|+-||+.|+|||++. .|+.. .....
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l-~~~~~ 247 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF-VHKYL 247 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT-CCSSC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh-hcccc
Confidence 46777776544434444333 33332 1222 22 234889999999999654 22221 12346
Q ss_pred CchHHHHHHHHHHhhhcCC
Q 001334 474 GVNYRALRDLFQISNTRGD 492 (1097)
Q Consensus 474 GIipRal~~LF~~~~~~~~ 492 (1097)
|-..+.++++|........
T Consensus 248 Ge~e~~ir~lF~~A~~~aP 266 (428)
T 4b4t_K 248 GEGPRMVRDVFRLARENAP 266 (428)
T ss_dssp SHHHHHHHHHHHHHHHTCS
T ss_pred chhHHHHHHHHHHHHHcCC
Confidence 8889999999998776543
No 74
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=88.60 E-value=0.22 Score=53.13 Aligned_cols=78 Identities=10% Similarity=0.219 Sum_probs=55.3
Q ss_pred CHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHh-cCCC-ceecCccccc
Q 001334 14 SEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKD-MQLL-TFEASDLEKG 91 (1097)
Q Consensus 14 s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~-lg~~-lFet~DL~e~ 91 (1097)
...+|-..++||.++|.|++.+.|+.|+.-. +..-...+|....+..+++ +|++ +..+.|+...
T Consensus 153 ~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~~--------------l~~~~~~~n~~~a~~~a~~~lGi~~~l~peDi~~~ 218 (245)
T 1sh5_A 153 RCDNFTTSWRDGRLFNAIIHRHKPMLIDMNK--------------VYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVP 218 (245)
T ss_dssp CCCCSSGGGTTSHHHHHHHHTTCTTTCCHHH--------------HHHSCHHHHHHHHHHHHHHHHCCCCCCCHHHHSSS
T ss_pred ccCCccccccchHHHHHHHHHHCCCCCCHHH--------------cccCCHHHHHHHHHHHHHHhCCCCccCCHHHhccC
Confidence 3456777899999999999999999884110 1112356899999999986 8998 5588888764
Q ss_pred -CChhhHHHHHHHHh
Q 001334 92 -GSSSKVVDCILCLK 105 (1097)
Q Consensus 92 -kn~~kVv~cLlaLk 105 (1097)
.|...|+.-|..|.
T Consensus 219 ~pd~k~i~tyva~l~ 233 (245)
T 1sh5_A 219 QPDEKSIITYVSSLY 233 (245)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 35555555555553
No 75
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=88.58 E-value=0.17 Score=48.70 Aligned_cols=79 Identities=11% Similarity=0.175 Sum_probs=53.9
Q ss_pred CHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHH-hcCCC-ceecCccccc
Q 001334 14 SEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVK-DMQLL-TFEASDLEKG 91 (1097)
Q Consensus 14 s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~-~lg~~-lFet~DL~e~ 91 (1097)
...||-...+||.++|.|++.++|+.|.. . .+..-...+|+..=+..++ ++|++ +.++.|+-.+
T Consensus 28 ~v~nFs~sw~DG~af~aLih~~~P~lid~-------~-------~l~~~~~~~n~~~af~~Ae~~lgi~~ll~~eDv~~~ 93 (118)
T 1bhd_A 28 NVLNFTTSWTDGLAFNAVLHRHKPDLFSW-------D-------KVVKMSPIERLEHAFSKAQTYLGIEKLLDPEDVAVR 93 (118)
T ss_dssp CCCSSSGGGTTSHHHHHHHHHHCGGGSCH-------H-------HHHHSCHHHHHHHHHHHHHHHHCCCCCSCHHHHHTS
T ss_pred CCCCCcccccCcHHHHHHHHHHCcCcCCH-------H-------HhCcCCHHHHHHHHHHHHHHHcCCCcccCHHHhhcC
Confidence 45678889999999999999999998831 0 1111224577777666665 78999 5688888643
Q ss_pred -CChhhHHHHHHHHhh
Q 001334 92 -GSSSKVVDCILCLKG 106 (1097)
Q Consensus 92 -kn~~kVv~cLlaLks 106 (1097)
-+-..|+.-|..|-.
T Consensus 94 ~pD~ksvmtYvs~l~~ 109 (118)
T 1bhd_A 94 LPDKKSIIMYLTSLFE 109 (118)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 344555555555533
No 76
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.57 E-value=0.11 Score=57.15 Aligned_cols=50 Identities=18% Similarity=0.350 Sum_probs=35.1
Q ss_pred EeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 414 FLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
++||.+......+..++..+...+...-.+....|+-||++|+||||.+.
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 56776554444566677766667766544445667889999999999984
No 77
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=87.13 E-value=0.28 Score=52.49 Aligned_cols=75 Identities=12% Similarity=0.167 Sum_probs=51.6
Q ss_pred CHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHh-cCCC-ceecCccccc
Q 001334 14 SEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKD-MQLL-TFEASDLEKG 91 (1097)
Q Consensus 14 s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~-lg~~-lFet~DL~e~ 91 (1097)
...+|-..++||.++|.|++.++|+.++..-. +..-...+|...-+..+++ +|++ +..+.|+.++
T Consensus 160 ~v~nFs~s~~dG~a~~aLi~~~~P~~i~~~~~-------------l~~~~~~~n~~~a~~~A~~~lGi~~~l~peDi~~~ 226 (245)
T 2wa7_A 160 PITNFNQNWQDGKALGALVDSCAPGLCPDWES-------------WDPQKPVDNAREAVQQADDWLGVPQVITPEEIIHP 226 (245)
T ss_dssp CCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGG-------------SCTTCHHHHHHHHHHHHHHHSCCCCSSCHHHHTCT
T ss_pred CCCCCcccchhhHHHHHHHHHHCccccccccc-------------cCcccHHHHHHHHHHHHHHhCCCCccCCHHHhccC
Confidence 34567778999999999999999998732110 0112356888888888887 8999 4588898875
Q ss_pred CChhhHHHHH
Q 001334 92 GSSSKVVDCI 101 (1097)
Q Consensus 92 kn~~kVv~cL 101 (1097)
.-=.+.+.|.
T Consensus 227 ~~d~ksi~ty 236 (245)
T 2wa7_A 227 DVDEHSVMTY 236 (245)
T ss_dssp TCCHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 2222444444
No 78
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.37 E-value=3.7 Score=47.69 Aligned_cols=78 Identities=22% Similarity=0.365 Sum_probs=48.5
Q ss_pred EeeceeeCCCCChHHHHhhh-hhhHh-hhcC--C--cceeEEeeccCCCCcceee--------------cCCCCCccccc
Q 001334 414 FLFNKVFAPNVSQEQIYVDT-QPLVR-SVLD--G--FNVCIFAYGQTGSGKTYTM--------------SGPDLTAEETW 473 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev-~PLV~-svLd--G--yNvcIfAYGQTGSGKTyTM--------------~G~~~~~~e~~ 473 (1097)
-+||.|-|-+.--+++.+.+ .|+.. ..+. | +--.|+-||+.|+|||++. .|+.. .....
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l-~~~~v 256 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL-VQMYI 256 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG-CSSCS
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh-hhccc
Confidence 46788877655545555443 45542 2332 2 2345788999999999654 22211 12345
Q ss_pred CchHHHHHHHHHHhhhcCC
Q 001334 474 GVNYRALRDLFQISNTRGD 492 (1097)
Q Consensus 474 GIipRal~~LF~~~~~~~~ 492 (1097)
|--.+.++.+|........
T Consensus 257 Gese~~ir~lF~~A~~~aP 275 (434)
T 4b4t_M 257 GEGAKLVRDAFALAKEKAP 275 (434)
T ss_dssp SHHHHHHHHHHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHhcCC
Confidence 7788999999998776554
No 79
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=84.94 E-value=3.4 Score=45.35 Aligned_cols=262 Identities=14% Similarity=0.166 Sum_probs=123.9
Q ss_pred hhhhhhcCCCCEEEEEEeCCCCCCCCCCCCceEEecCCCcEEEeCCCCCCCCCceeEeeceeeCCCC--ChHHHHhhhhh
Q 001334 358 LYNQVQDLKGTIRVYCRVRPFLPGQSNGQSTVDYIGENGNIMVTNPFKQGKDARKMFLFNKVFAPNV--SQEQIYVDTQP 435 (1097)
Q Consensus 358 L~N~lqelKGnIRV~cRVRP~~~~E~~~~s~v~~~~~~~~i~I~~p~~~gk~~~k~F~FD~VF~~~a--tQeeVF~ev~P 435 (1097)
|-|.+.|+||.||.|+=+-.-. -+....+.-.+.+|. + ....+.|.|++|....- .++-+|++.+.
T Consensus 4 LeNSIdElkG~iRcFAYi~e~~-----l~~~~~IdY~~~tI~--~-----~~~~~~y~F~RiIp~~~~~e~~ll~qE~~~ 71 (275)
T 4gkp_A 4 LLNSITELKGCARLFANIIEDE-----ISEKLIVNYSDESIE--D-----MKNHKTYKFTKLIQNFSHQNKDLFKEDLHV 71 (275)
T ss_dssp ------------CEEEEEETTT-----SCTTEEEETTTTEEE--E-----TTTTEEEECSEEEEECSSSCCCGGGTHHHH
T ss_pred ccccHHHhcCcEEEEEEEcccc-----CCccEEEecccceec--c-----CCCccEEEEEeeeccccCCHHHHHHHHHHH
Confidence 5689999999999999885421 122233333445543 1 12357899999996542 34455677888
Q ss_pred hHhhhc-CCcceeEEeeccCCCCcceeecCCCCCcccccCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEeccee-eec
Q 001334 436 LVRSVL-DGFNVCIFAYGQTGSGKTYTMSGPDLTAEETWGVNYRALRDLFQISNTRGDMIKYEVGVQMIEIYNEQV-RDL 513 (1097)
Q Consensus 436 LV~svL-dGyNvcIfAYGQTGSGKTyTM~G~~~~~~e~~GIipRal~~LF~~~~~~~~~~~y~V~VS~lEIYNE~V-~DL 513 (1097)
-.+.|| .+.|+.||..++.- -+-+.-..+..+... .. ..|.+.++|+=+-.+.. -||
T Consensus 72 Y~DmCL~k~~NfnlISiS~~~----------------~~~lr~~ll~f~~~~---y~--~~y~itlQ~V~Ls~~~~S~Dl 130 (275)
T 4gkp_A 72 YIDFCLKRRENFNLFSVGSSN----------------IPNTFEKLLAFFKNN---YF--DKFVITLQYVMLSDNADSQDL 130 (275)
T ss_dssp HHHHHHHTTCCEEEEEECCSS----------------CCSHHHHHHHHHHHH---TT--TTEEEEEEEEEEC----CEET
T ss_pred HHHHHhccCCCceEEEecCCC----------------cHHHHHHHHHHHHHh---cc--ccceEEEEEEEecCCCccccc
Confidence 999888 79999999877532 112333444444332 22 26888999888876664 588
Q ss_pred cCCCCCCc---ccceecccCCCCeeecCCcEEeeCCHHHHHHHHHHHHhcccccccCCcCCCCCceEEEEEEEEeeeecc
Q 001334 514 LVSDGSNR---RLDIRNTAQANGLNVPDASLIPVTSTEDVIELMRIGQKNRAVGATALNERSSRSHSVLTVHVLGRELVT 590 (1097)
Q Consensus 514 L~~~~~~~---~l~Ir~~~~~~G~~V~gltev~V~S~eev~~LL~~G~~nR~~asT~~N~~SSRSHaIftI~V~~~~~~~ 590 (1097)
|..+.... .++++-+ .+.+.+ +-+.+.+.+..+...+. -..-+......-.|+++.+..++..
T Consensus 131 l~~~~~~~~d~eI~Lk~e--~~sI~l-dS~~i~i~~~~~~~~~~----------~~~~~~~~~~Gi~IlKfq~~~~~~~- 196 (275)
T 4gkp_A 131 LSNNKDGGKDVEIKLKIE--ESTISL-GSTLITLDEITDKLQIK----------KKYSQLNHQNGIGLSKFQFFCLQDI- 196 (275)
T ss_dssp TCC----------CEEEC--SSCEEE-CSCCEEGGGCCSCC--C----------CSCC-----CCEEEEEEEEEETTCS-
T ss_pred ccCCccccCCcceeEEee--cceeee-cceEEEeccCccccchh----------hhccCCCCCCCceEEEEEEEeccCC-
Confidence 86543211 1222211 111211 12223333222111110 0000011112233666666544321
Q ss_pred CceeeeeEEEeecCCCcccccchhhhhhHHHHHHHHhhHHHHHHHHHHHhhCCCCccCCCCchhhhhhhccCCCceeeEE
Q 001334 591 GSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMF 670 (1097)
Q Consensus 591 g~~~~skL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsALg~VI~ALa~k~~hIPYRdSKLTrLLqDSLGGnSkTlMI 670 (1097)
....-..+||.+-+..- ...|.++++ +.. +-.|.++-+|+.-| ...|-+++
T Consensus 197 -e~~pidfYFiei~~~~t--------------------~~~L~~~~s----~~~---~~~spi~~iLk~LL-~~TKS~fl 247 (275)
T 4gkp_A 197 -EPIPIDFYFIEIYQPSI--------------------YPILKRSTG----TES---NLNSPLEIVLKKIF-HDTKSAFV 247 (275)
T ss_dssp -SCCCEEEEEEEECCGGG--------------------HHHHHHC---------------CHHHHHHHHHH-HHSBCCEE
T ss_pred -CCCceeEEEEEecCHHH--------------------HHHHHhccC----CCC---CCCCcHHHHHHHHH-hcCcceEE
Confidence 11122578888765431 222322221 111 11277787776544 46788999
Q ss_pred EecCCCCCcHHHHHHHHHHHHHhcccccc
Q 001334 671 VHINPEHNAIGETISTLKFAERVSSIELG 699 (1097)
Q Consensus 671 a~ISP~~~~~~ETLsTLrFAsRak~I~~~ 699 (1097)
.++.-.. +.-..|..+.++.++++.
T Consensus 248 fni~~~~----n~~~lL~ls~~l~~~~~~ 272 (275)
T 4gkp_A 248 FQIDHSA----EVYDILKLSSHLSFIRNP 272 (275)
T ss_dssp EEESSCT----THHHHHHHHHHHTTCCCC
T ss_pred EEccCcc----hHHHHHHHHHHhccccCc
Confidence 9997654 233678888888888753
No 80
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=84.06 E-value=0.41 Score=52.02 Aligned_cols=75 Identities=12% Similarity=0.235 Sum_probs=52.4
Q ss_pred HHHHHHHhHhHHHHHHHHhhhCCCCccc-----eecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCCce-ecCcc
Q 001334 15 EEEFRLALRNGLILCNVLNKVNPGAVLK-----VVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLLTF-EASDL 88 (1097)
Q Consensus 15 ~edf~~~LrDGvILC~L~N~l~PgsV~k-----v~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~lF-et~DL 88 (1097)
..+|-..++||+++|.|++.+.|+.++. .+... .++.-...+|...-+..++++|++.| .+.|+
T Consensus 189 I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~----------~~~~~~~~~n~~~a~~~A~~lGi~~~l~peDi 258 (275)
T 1aoa_A 189 INNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMS----------GFNETDDLKRAESMLQQADKLGCRQFVTPADV 258 (275)
T ss_dssp CSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCT----------TTTCSSHHHHHHHHHHHHTTTTCCCSCCHHHH
T ss_pred chhhhhhhhhhHHHHHHHHHHCCCcccccccccccccc----------CCCccCHHHHHHHHHHHHHHcCCCCcCCHHHc
Confidence 4567777999999999999999996642 11111 11112456899999999999999944 88898
Q ss_pred cccCChhhHHHHH
Q 001334 89 EKGGSSSKVVDCI 101 (1097)
Q Consensus 89 ~e~kn~~kVv~cL 101 (1097)
.++ +. +.+-+.
T Consensus 259 ~~~-~~-k~i~ty 269 (275)
T 1aoa_A 259 VSG-NP-KLNLAF 269 (275)
T ss_dssp HTT-CH-HHHHHH
T ss_pred CCC-Ch-hHHHHH
Confidence 865 44 333333
No 81
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=83.97 E-value=0.33 Score=51.98 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=54.7
Q ss_pred CCHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHH-hcCCC-ceecCcccc
Q 001334 13 PSEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVK-DMQLL-TFEASDLEK 90 (1097)
Q Consensus 13 ~s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~-~lg~~-lFet~DL~e 90 (1097)
....+|-..++||.++|.|++.+.|+.++.-. . . +.-...+|....+..++ ++|++ +..+.|+..
T Consensus 154 ~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~~--~-----~------~~~~~~~n~~~a~~~A~~~lGi~~~l~peDi~~ 220 (246)
T 1dxx_A 154 VNVINFTTSWSDGLALNALIHSHRPDLFDWNS--V-----V------SQQSATQRLEHAFNIARYQLGIEKLLDPEDVDT 220 (246)
T ss_dssp CCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHH--H-----H------TCCCHHHHHHHHHHHHHHTTCCCCCCCHHHHSS
T ss_pred CCcCCCcccchhHHHHHHHHHHHCcCccchhh--h-----c------ccCCHHHHHHHHHHHHHHhCCCCccCCHHHhhc
Confidence 34567888899999999999999999873100 0 0 00124578888888887 78999 558888865
Q ss_pred cC-ChhhHHHHHHHHhh
Q 001334 91 GG-SSSKVVDCILCLKG 106 (1097)
Q Consensus 91 ~k-n~~kVv~cLlaLks 106 (1097)
+. +-..|+.-|..|..
T Consensus 221 ~~pD~k~i~tyva~l~~ 237 (246)
T 1dxx_A 221 TYPDKKSILMYITSLFQ 237 (246)
T ss_dssp SSCCHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 43 22455555555533
No 82
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=81.84 E-value=0.6 Score=51.08 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=47.8
Q ss_pred HHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHh-cCCC-ceecCccccc
Q 001334 15 EEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKD-MQLL-TFEASDLEKG 91 (1097)
Q Consensus 15 ~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~-lg~~-lFet~DL~e~ 91 (1097)
..+|-...+||+++|.|++.++|+.++.... +..-...+|...-+..+++ +|++ +.++.|+...
T Consensus 188 I~nFs~sw~DG~af~aLi~~~~P~li~d~~~-------------l~~~~~~~n~~~Af~~Ae~~lGi~~ll~peDiv~~ 253 (272)
T 3hoc_A 188 ITNFSRDWQSGRALGALVDSCAPGLCPDWDS-------------WDASKPVTNAREAMQQADDWLGIPQVITPEEIVDP 253 (272)
T ss_dssp CCCSSGGGTTSHHHHHHHHHHSTTSSTTGGG-------------SCTTCHHHHHHHHHHHHHHHHCCCCSSCHHHHTCT
T ss_pred CCChhhcccchHHHHHHHHHhCcccccchhh-------------cCccCHHHHHHHHHHHHHHhCCCCccCCHHHhccC
Confidence 3456777899999999999999998832111 0112357899999998887 8998 4588898874
No 83
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=81.50 E-value=0.68 Score=52.20 Aligned_cols=75 Identities=12% Similarity=0.171 Sum_probs=50.1
Q ss_pred CHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHh-cCCC-ceecCccccc
Q 001334 14 SEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKD-MQLL-TFEASDLEKG 91 (1097)
Q Consensus 14 s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~-lg~~-lFet~DL~e~ 91 (1097)
...+|-...+||.++|.|++.++|+.++.... +..-...+|...-+..+++ +|++ +.++.|+...
T Consensus 157 ~v~nF~~sw~DG~af~aLi~~~~P~~~~d~~~-------------l~~~~~~~n~~~Af~~Ae~~lGip~ll~peDi~~~ 223 (347)
T 4b7l_A 157 PITNFNQNWQDGKALGALVDSCAPGLCPDWES-------------WDPQKPVDNAREAMQQADDWLGVPQVITPEEIIHP 223 (347)
T ss_dssp CCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGG-------------SCTTCHHHHHHHHHHHHHHHHCCCCSSCHHHHTCT
T ss_pred ccCCCCCCccchHHHHHHHHHhCCccccchhh-------------cCcCCHHHHHHHHHHHHHHhcCCCcccCHHHcCCC
Confidence 34567778899999999999999998842111 0112246788877776665 8999 5588898765
Q ss_pred CChhhHHHHH
Q 001334 92 GSSSKVVDCI 101 (1097)
Q Consensus 92 kn~~kVv~cL 101 (1097)
.==.+.|.|-
T Consensus 224 ~pDeksimtY 233 (347)
T 4b7l_A 224 DVDEHSVMTY 233 (347)
T ss_dssp TCCHHHHHHH
T ss_pred CCChhHHHHH
Confidence 4212344444
No 84
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.98 E-value=11 Score=43.30 Aligned_cols=78 Identities=23% Similarity=0.394 Sum_probs=47.6
Q ss_pred EeeceeeCCCCChHHHHhhh-hhhHh-hhcC--Cc--ceeEEeeccCCCCcceee--------------cCCCCCccccc
Q 001334 414 FLFNKVFAPNVSQEQIYVDT-QPLVR-SVLD--GF--NVCIFAYGQTGSGKTYTM--------------SGPDLTAEETW 473 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev-~PLV~-svLd--Gy--NvcIfAYGQTGSGKTyTM--------------~G~~~~~~e~~ 473 (1097)
-+||.|-|-+.--+++-+.+ .|+.. ..+. |. --.|+-||+.|+|||++. .|+.. .....
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l-~sk~v 223 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL-VQKYI 223 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG-SCSST
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHh-hcccc
Confidence 45777766544444444443 44442 2333 22 245889999999999764 22211 12345
Q ss_pred CchHHHHHHHHHHhhhcCC
Q 001334 474 GVNYRALRDLFQISNTRGD 492 (1097)
Q Consensus 474 GIipRal~~LF~~~~~~~~ 492 (1097)
|--.+.++.+|........
T Consensus 224 Gese~~vr~lF~~Ar~~aP 242 (405)
T 4b4t_J 224 GEGSRMVRELFVMAREHAP 242 (405)
T ss_dssp THHHHHHHHHHHHHHHTCS
T ss_pred chHHHHHHHHHHHHHHhCC
Confidence 7788999999998876654
No 85
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=79.72 E-value=0.7 Score=51.17 Aligned_cols=77 Identities=12% Similarity=0.255 Sum_probs=53.5
Q ss_pred CHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHH-HhcCCCc-eecCccccc
Q 001334 14 SEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAV-KDMQLLT-FEASDLEKG 91 (1097)
Q Consensus 14 s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac-~~lg~~l-Fet~DL~e~ 91 (1097)
...+|-...+||.++|.|++.++|+.|..-.-.+ -...+|+..-+..+ +++|++. .++.|+...
T Consensus 209 ~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l~~--------------~~~~~N~~~Af~~Ae~~LGi~~ll~pEDi~~~ 274 (296)
T 3f7p_A 209 RCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYR--------------QTNLENLDQAFSVAERDLGVTRLLDPEDVDVP 274 (296)
T ss_dssp CCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHHTT--------------SCHHHHHHHHHHHHHHHHCCCCCCCHHHHSSS
T ss_pred cCCCccccccccHHHHHHHHHHCcCccCHHHcCc--------------ccHHHHHHHHHHHHHHhCCCCccCCHHHhcCC
Confidence 3456778899999999999999999883110011 12468999988888 5789994 578888654
Q ss_pred -CChhhHHHHHHHH
Q 001334 92 -GSSSKVVDCILCL 104 (1097)
Q Consensus 92 -kn~~kVv~cLlaL 104 (1097)
.|...|+.-|..|
T Consensus 275 ~pDeksimtyvs~l 288 (296)
T 3f7p_A 275 QPDEKSIITYVSSL 288 (296)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 3555555555555
No 86
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=79.52 E-value=0.5 Score=49.74 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=22.0
Q ss_pred EeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 414 FLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
|+||.+.+.+..-..+.+ .+..+.. .+..|+-||.+|+|||+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~----~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLE----QVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp -------CCCHHHHHHHH----HHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred cccccceeCCHHHHHHHH----HHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 678888765433333333 2333222 2356778999999999876
No 87
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=78.26 E-value=0.62 Score=47.10 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=27.6
Q ss_pred EeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 414 FLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+.||.+++. ..+..++..+..++. .+....|+-||++|+|||+.+
T Consensus 25 ~~~~~~~~~-~~~~~~~~~l~~~~~---~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGALKSAAS---GDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC---CCHHHHHHHHHHHH---TCSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccCC-CCCHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 456665552 234555554443333 224567888999999999987
No 88
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.75 E-value=10 Score=44.04 Aligned_cols=78 Identities=17% Similarity=0.327 Sum_probs=46.4
Q ss_pred EeeceeeCCCCChHHHHhhh-hhhHh-hhcCCc----ceeEEeeccCCCCcceee--------------cCCCCCccccc
Q 001334 414 FLFNKVFAPNVSQEQIYVDT-QPLVR-SVLDGF----NVCIFAYGQTGSGKTYTM--------------SGPDLTAEETW 473 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev-~PLV~-svLdGy----NvcIfAYGQTGSGKTyTM--------------~G~~~~~~e~~ 473 (1097)
.+||.|-|-+..-+++.+.+ .|+-. ..+..+ --.|+-||+.|+|||++. .|+.. .....
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l-~sk~~ 256 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI-VDKYI 256 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT-CCSSS
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhh-ccccc
Confidence 45777776544333443333 34432 233222 245888999999999754 22211 12345
Q ss_pred CchHHHHHHHHHHhhhcCC
Q 001334 474 GVNYRALRDLFQISNTRGD 492 (1097)
Q Consensus 474 GIipRal~~LF~~~~~~~~ 492 (1097)
|--.+.+..+|........
T Consensus 257 Gese~~ir~~F~~A~~~~P 275 (437)
T 4b4t_L 257 GESARIIREMFAYAKEHEP 275 (437)
T ss_dssp SHHHHHHHHHHHHHHHSCS
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 7778999999998776554
No 89
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=75.98 E-value=0.92 Score=49.22 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=30.0
Q ss_pred eEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
.|+||..+.. ..+...+..+..++..--. ....++-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~g-~~~~~a~~~~~~~~~~~~~-~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIVG-EGNRLAYEVVKEALENLGS-LYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCCC-TTTHHHHHHHHHHHHTTTT-SCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCCC-CcHHHHHHHHHHHHhCcCC-CCCeEEEECCCCCcHHHHHH
Confidence 4778876632 2344455444444443211 23457789999999999873
No 90
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=75.87 E-value=0.87 Score=43.81 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=20.1
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
++..+..+....|+-||++|+|||+.+
T Consensus 34 l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 34 TIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 334444465667888999999999987
No 91
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=74.43 E-value=0.85 Score=56.44 Aligned_cols=77 Identities=10% Similarity=0.268 Sum_probs=55.5
Q ss_pred CHHHHHHHhHhHHHHHHHHhhhCCCCccceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHh-cCCC-ceecCccccc
Q 001334 14 SEEEFRLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKD-MQLL-TFEASDLEKG 91 (1097)
Q Consensus 14 s~edf~~~LrDGvILC~L~N~l~PgsV~kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~-lg~~-lFet~DL~e~ 91 (1097)
...+|-..++||.++|.|++.+.|+.|+.-.-.+ -...+|...-+..+++ +|+| +..+.|+.++
T Consensus 141 ~v~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~~--------------~~~~~n~~~a~~~a~~~lg~~~~l~~ed~~~~ 206 (863)
T 1sjj_A 141 NIQNFHISWKDGLGFCALIHRHRPELIDYGKLRK--------------DDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGT 206 (863)
T ss_dssp CCCSSSGGGTTSHHHHHHHHTTCCSSSCSGGGGS--------------CCCGGGCTHHHHHHHHHHCCCCSCCHHHHTTC
T ss_pred CCCCCccccccHHHHHHHHHHhCCCCcChhhCCC--------------CCHHHHHHHHHHHHHHhCCCCCccCHHHHhCC
Confidence 4567888999999999999999999884211011 1245788888888876 7999 5588898775
Q ss_pred C--ChhhHHHHHHHH
Q 001334 92 G--SSSKVVDCILCL 104 (1097)
Q Consensus 92 k--n~~kVv~cLlaL 104 (1097)
. |-..|+..|..|
T Consensus 207 ~~pd~~~~~~y~~~l 221 (863)
T 1sjj_A 207 ARPDEKAIMTYVSSF 221 (863)
T ss_dssp SSCCHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHH
Confidence 4 445666666655
No 92
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=73.65 E-value=0.99 Score=49.14 Aligned_cols=40 Identities=23% Similarity=0.211 Sum_probs=27.5
Q ss_pred CCChHHHHhhhhhhHhhhcC-CcceeEEeeccCCCCcceee
Q 001334 423 NVSQEQIYVDTQPLVRSVLD-GFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 423 ~atQeeVF~ev~PLV~svLd-GyNvcIfAYGQTGSGKTyTM 462 (1097)
-..+++....+...+..++. +...+++-||++|+|||+++
T Consensus 21 ~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 21 LPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34456666665555555543 44567889999999999887
No 93
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=73.64 E-value=0.9 Score=48.05 Aligned_cols=46 Identities=22% Similarity=0.156 Sum_probs=27.7
Q ss_pred ceeeCCCCChHHHHhhhhhhHhhhc---CCcceeEEeeccCCCCcceee
Q 001334 417 NKVFAPNVSQEQIYVDTQPLVRSVL---DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 417 D~VF~~~atQeeVF~ev~PLV~svL---dGyNvcIfAYGQTGSGKTyTM 462 (1097)
+.+++.......+......++..+. ......|+-||++|+|||++.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHH
Confidence 3344433333444443223444432 566778999999999999886
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=73.59 E-value=1.2 Score=43.75 Aligned_cols=17 Identities=29% Similarity=0.768 Sum_probs=14.2
Q ss_pred eEEeeccCCCCcceeec
Q 001334 447 CIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM~ 463 (1097)
.++-||++|+|||+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp EEEEESSSTTTTCHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45569999999999983
No 95
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=72.76 E-value=4.9 Score=29.74 Aligned_cols=30 Identities=37% Similarity=0.658 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001334 708 GEIRELREEISNLKQTLEKKEAELEQLRRG 737 (1097)
Q Consensus 708 ~~i~eLreEI~~LK~~L~~~e~eleqlr~~ 737 (1097)
++|..|+.||..||+++..++-|+..|+.+
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 467889999999999999999888888765
No 96
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=72.07 E-value=6.2 Score=39.53 Aligned_cols=82 Identities=11% Similarity=0.144 Sum_probs=60.2
Q ss_pred HHhHhHHHHHHHHhhhCCCCcc--ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC-ceecCcccccCChhh
Q 001334 20 LALRNGLILCNVLNKVNPGAVL--KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL-TFEASDLEKGGSSSK 96 (1097)
Q Consensus 20 ~~LrDGvILC~L~N~l~PgsV~--kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~-lFet~DL~e~kn~~k 96 (1097)
+-|.+|++.|.+++.|. |+|+ ||.-.++.. +.|..|..-+-.+-.+++++ .+....|-.|+ +.-
T Consensus 27 E~l~sGAaYCQlmD~lf-g~i~l~kVkf~a~~e-----------~e~i~NfKlLQ~~F~k~~I~k~ipV~kLvKgk-~QD 93 (145)
T 4abo_I 27 EDCGKGYAMIQIFDSIY-QDIPLKKVNFECNNE-----------YQYINNWKVLQQVFLKKGIDKVVDPERLSRCK-MQD 93 (145)
T ss_dssp GGGGGSHHHHHHHHHHH-CCSCTTTSCSSCCSH-----------HHHHHHHHHHHHHHHHHTCCCCCCHHHHTTTC-HHH
T ss_pred HHccccHHHHHHHHHHh-cCcchhhcccCCCCH-----------HHHHHHHHHHHHHHHHcCCCCccCHHHHhccc-hHh
Confidence 34788999999999999 8887 444344433 77888888888888999988 56666676665 444
Q ss_pred HHHHHHHHhhhhhhhccC
Q 001334 97 VVDCILCLKGYYEWKQAG 114 (1097)
Q Consensus 97 Vv~cLlaLks~~~~K~~G 114 (1097)
=++-|.-++.|++..-.|
T Consensus 94 NlEFlQWfkkf~d~n~~~ 111 (145)
T 4abo_I 94 NLEFVQWAKRFWDQYYPG 111 (145)
T ss_dssp HHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 456677788888875543
No 97
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=72.06 E-value=0.98 Score=43.60 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=20.0
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
++..+..+....|+-||++|+|||+.+
T Consensus 34 l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 34 AIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 334344455667889999999999887
No 98
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=72.01 E-value=0.99 Score=47.33 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=32.2
Q ss_pred eEeeceeeCCCCChHHHHhhhhhh-----HhhhcCCcceeEEeeccCCCCcceee
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPL-----VRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PL-----V~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+.|+.+.+.+...+.+...+..+ ...+-......|+-||++|+|||+.+
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 467888988887776665543221 11111122345888999999999987
No 99
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=70.20 E-value=1.3 Score=45.00 Aligned_cols=24 Identities=33% Similarity=0.657 Sum_probs=19.1
Q ss_pred hHhhhcCCcceeEEeeccCCCCccee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYT 461 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyT 461 (1097)
.+..+++|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4556678877 56789999999987
No 100
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=69.90 E-value=1.4 Score=48.25 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=32.2
Q ss_pred eEeeceeeCCCCChHHHHhhhhhhHhhhcCCcce--eEEeeccCCCCcceeec
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNV--CIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNv--cIfAYGQTGSGKTyTM~ 463 (1097)
.+.||.+.+ |+.+......++..+..|... .++-||++|+|||+...
T Consensus 40 ~~~~~~ivG----~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcchhhccC----hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 356777776 455554445555555566553 78889999999998863
No 101
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=69.39 E-value=1.4 Score=43.98 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=18.4
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..+++|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 3455677876 456789999999754
No 102
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=68.96 E-value=1.6 Score=50.23 Aligned_cols=49 Identities=20% Similarity=0.326 Sum_probs=29.4
Q ss_pred eeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 412 KMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 412 k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
..|+||...... .+...+..+..++.. .|..-.++-||++|+|||+.+.
T Consensus 100 ~~~tfd~fv~g~-~n~~a~~~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 100 PDYTFENFVVGP-GNSFAYHAALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TTCSGGGCCCCT-TTHHHHHHHHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCChhhcCCCC-chHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 347888755322 333344444444433 2312357789999999999883
No 103
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=68.37 E-value=1.5 Score=43.70 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=18.1
Q ss_pred hHhhhcCCcceeEEeeccCCCCccee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYT 461 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyT 461 (1097)
.+..+++|.| ++..++||||||.+
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHH
Confidence 3455677876 45678999999987
No 104
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=67.51 E-value=2.2 Score=46.18 Aligned_cols=29 Identities=17% Similarity=0.463 Sum_probs=19.3
Q ss_pred hhhHhhhcC--Ccc--eeEEeeccCCCCcceee
Q 001334 434 QPLVRSVLD--GFN--VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 434 ~PLV~svLd--GyN--vcIfAYGQTGSGKTyTM 462 (1097)
..++...+. |.. ..|+-||++|+|||+..
T Consensus 21 ~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 21 VHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp HHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 445555443 222 35777999999999876
No 105
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=66.84 E-value=1.3 Score=46.35 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=14.0
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|+-||++|+|||+.+
T Consensus 52 ~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 889999999999987
No 106
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=66.59 E-value=1.6 Score=47.34 Aligned_cols=44 Identities=18% Similarity=0.414 Sum_probs=28.3
Q ss_pred eeEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 412 KMFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 412 k~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
..|.|+.+++.+ .+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~----~~~~~---l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKLA---LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH----HHHHH---HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH----HHHHH---HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 457899888753 33322 222233334445888999999999876
No 107
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=65.62 E-value=1.8 Score=44.66 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=19.4
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..+++|.+ ++..++||||||.+.
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4556678877 577889999999873
No 108
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=64.78 E-value=1.2 Score=46.14 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=20.0
Q ss_pred hhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 435 PLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 435 PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
..+..+++|.| ++..++||||||.+.
T Consensus 59 ~ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 59 RAIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 34566778877 567899999999874
No 109
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=64.41 E-value=2.6 Score=43.55 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.0
Q ss_pred cceeEEeeccCCCCcceee
Q 001334 444 FNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM 462 (1097)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456889999999999886
No 110
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=64.09 E-value=2.3 Score=49.04 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=31.3
Q ss_pred eEeeceeeCCCCChHHHHhhhhhhHhhhcCCcc--eeEEeeccCCCCcceee
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFN--VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyN--vcIfAYGQTGSGKTyTM 462 (1097)
.+.||.|.+ |+++...+..++..+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 355677765 56666655556666655543 25777999999999865
No 111
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=63.76 E-value=2.6 Score=44.97 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=15.8
Q ss_pred cceeEEeeccCCCCcceee
Q 001334 444 FNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM 462 (1097)
....|+-||++|+|||++.
T Consensus 66 ~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3446888999999999876
No 112
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=63.72 E-value=1.9 Score=47.18 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=26.2
Q ss_pred ChHHHHhhhhhhHhhhcCCcc-e--eEEeeccCCCCcceee
Q 001334 425 SQEQIYVDTQPLVRSVLDGFN-V--CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 425 tQeeVF~ev~PLV~svLdGyN-v--cIfAYGQTGSGKTyTM 462 (1097)
.+++....+...+..++.|.. . +++-||++|+|||+++
T Consensus 21 gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 21 HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 345555555555666555533 3 6888999999999887
No 113
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=62.99 E-value=2.4 Score=41.70 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=21.6
Q ss_pred hHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 426 QEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 426 QeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
++++...+...+. .+....++-||++|+|||+++
T Consensus 22 ~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 22 QDEVIQRLKGYVE---RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CHHHHHHHHHHHH---TTCCCCEEEECSTTSSHHHHH
T ss_pred cHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 3445444433333 233334889999999999886
No 114
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=62.75 E-value=2.2 Score=43.74 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=18.5
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..+++|.++ +..++||||||.+.
T Consensus 55 ~i~~~~~~~~~--li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKDV--LGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEEeCCCCcHHHHH
Confidence 34556788774 56789999999863
No 115
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=62.35 E-value=2.2 Score=43.48 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=19.2
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..+++|.|+ +..++||||||.+.
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 45667788775 56789999999864
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=62.22 E-value=1.8 Score=48.15 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=19.4
Q ss_pred cCCcceeEEeeccCCCCcceee
Q 001334 441 LDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 441 LdGyNvcIfAYGQTGSGKTyTM 462 (1097)
-.|...+|+-||++|+|||.++
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHH
Confidence 3678889999999999999886
No 117
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=61.78 E-value=2.4 Score=45.97 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=23.8
Q ss_pred hHHHHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 426 QEQIYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 426 QeeVF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
+++..+.+...+..++ .+...+++-||++|+|||+.+
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 3444444444444443 234557888999999999886
No 118
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=60.55 E-value=2.6 Score=42.68 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=18.7
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..+++|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 4456677877 456779999999864
No 119
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=60.52 E-value=1.9 Score=46.71 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=27.8
Q ss_pred EeeceeeCCCCChHHHHhhh-hhhHh-hhc----CCcceeEEeeccCCCCcceee
Q 001334 414 FLFNKVFAPNVSQEQIYVDT-QPLVR-SVL----DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev-~PLV~-svL----dGyNvcIfAYGQTGSGKTyTM 462 (1097)
+.||.|.+.+..-+.+.+.+ .|+.. ..+ -.....|+-||++|+|||+.+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 56777777544434444332 22211 011 123346788999999999876
No 120
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=60.09 E-value=20 Score=33.63 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 307 QELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQKV 351 (1097)
Q Consensus 307 ~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 351 (1097)
++|...+..+.+++......+.+++++|+..|..|+.+.+.++.+
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~L 76 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLL 76 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 366777788888888888999999999999999998887776554
No 121
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=59.76 E-value=2 Score=44.51 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=18.2
Q ss_pred hhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 435 PLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 435 PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.++..+..|.+ ++..|+||||||..+
T Consensus 68 ~~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 34455556754 456899999999754
No 122
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=59.64 E-value=2.7 Score=43.71 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=18.6
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..+++|.|+ +..++||||||.+.
T Consensus 53 ~i~~i~~~~~~--l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRDI--MACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 45566778774 55679999999864
No 123
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=59.61 E-value=1.3 Score=44.13 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=18.1
Q ss_pred HhhhcCCcceeEEeeccCCCCcceeec
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
+..+++|.+ ++..++||||||++..
T Consensus 42 i~~~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 42 AQPALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp HHHHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCCHHHHHH
Confidence 344556766 4568999999998863
No 124
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=59.24 E-value=2 Score=45.55 Aligned_cols=25 Identities=40% Similarity=0.707 Sum_probs=19.0
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..++.|.| +++.++||||||.+.
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHHH
Confidence 4555677876 567899999999863
No 125
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.18 E-value=2.9 Score=45.80 Aligned_cols=41 Identities=27% Similarity=0.545 Sum_probs=25.9
Q ss_pred eeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 415 LFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 415 ~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|+.+++ |+.+...+...|. .|.-..++-||+.|+|||+++
T Consensus 23 ~~~~~~g----~~~~~~~L~~~i~---~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 23 TLDEVYG----QNEVITTVRKFVD---EGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp SGGGCCS----CHHHHHHHHHHHH---TTCCCCEEEECSSSSSHHHHH
T ss_pred cHHHhcC----cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHH
Confidence 3566664 4566554433333 343223677999999999987
No 126
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=59.15 E-value=2.9 Score=45.42 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=20.0
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..++.|..--++++++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 456677774444678999999999874
No 127
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.29 E-value=46 Score=38.79 Aligned_cols=78 Identities=21% Similarity=0.362 Sum_probs=46.2
Q ss_pred EeeceeeCCCCChHHHHhhh-hhhHh-hhcC--C--cceeEEeeccCCCCcceee--------------cCCCCCccccc
Q 001334 414 FLFNKVFAPNVSQEQIYVDT-QPLVR-SVLD--G--FNVCIFAYGQTGSGKTYTM--------------SGPDLTAEETW 473 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev-~PLV~-svLd--G--yNvcIfAYGQTGSGKTyTM--------------~G~~~~~~e~~ 473 (1097)
-+||.|-|-+.--+++.+.+ .|+.. ..+. | +--.|+-||+.|+|||.+. .|+.. .....
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l-~sk~v 257 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL-IQKYL 257 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG-CCSSS
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh-hhccC
Confidence 45666665443333443333 33332 2222 2 2345889999999999643 33221 12346
Q ss_pred CchHHHHHHHHHHhhhcCC
Q 001334 474 GVNYRALRDLFQISNTRGD 492 (1097)
Q Consensus 474 GIipRal~~LF~~~~~~~~ 492 (1097)
|--.+.++.+|........
T Consensus 258 Gesek~ir~lF~~Ar~~aP 276 (437)
T 4b4t_I 258 GDGPRLCRQIFKVAGENAP 276 (437)
T ss_dssp SHHHHHHHHHHHHHHHTCS
T ss_pred chHHHHHHHHHHHHHhcCC
Confidence 8889999999998876654
No 128
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=58.11 E-value=2.2 Score=45.34 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.9
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|+-||++|+|||+.+
T Consensus 76 vll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCcChHHHHH
Confidence 788999999999987
No 129
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=57.62 E-value=3.6 Score=39.47 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCcceeec
Q 001334 446 VCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM~ 463 (1097)
..|+-||.+|+|||+...
T Consensus 28 ~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp SCEEEEEETTCCHHHHHG
T ss_pred CcEEEECCCCccHHHHHH
Confidence 446779999999998764
No 130
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=57.51 E-value=3.6 Score=42.92 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=27.7
Q ss_pred eEeeceeeCCCCChHHHHhhhhhhHh-hhcC----CcceeEEeeccCCCCcceee
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPLVR-SVLD----GFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PLV~-svLd----GyNvcIfAYGQTGSGKTyTM 462 (1097)
.+.||.|.+.+..-+.+...+..+.. ..+. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 35688887754433333322221111 1111 12345889999999999876
No 131
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=57.41 E-value=18 Score=35.40 Aligned_cols=79 Identities=13% Similarity=0.192 Sum_probs=56.4
Q ss_pred hHhHHHHHHHHhhhCCCCcc--ceecCchhhhhcccchhhhhhHHHhhHHHHHHHHHhcCCC-ceecCcccccCChhhHH
Q 001334 22 LRNGLILCNVLNKVNPGAVL--KVVENPIIAVQATEGAAQSAIQYFENMRNFLVAVKDMQLL-TFEASDLEKGGSSSKVV 98 (1097)
Q Consensus 22 LrDGvILC~L~N~l~PgsV~--kv~~~p~~~~~~~~~~~~s~F~~~ENI~nFL~ac~~lg~~-lFet~DL~e~kn~~kVv 98 (1097)
|.+|++.|.+++.+. |.|+ ++.-.++. .+.+..|..-+-.+-.+++++ .+....|-.|+ +.-=+
T Consensus 33 l~tGaayCQl~d~l~-g~v~l~kVkf~a~~-----------e~e~~~N~k~LQ~~f~k~~I~k~ipV~kLvKgr-fQDNl 99 (127)
T 2qjx_A 33 CGTGAAYCQIMDSIY-GDLPMNRVKFNATA-----------EYEFQTNYKILQSCFSRHGIEKTVYVDKLIRCK-FQDNL 99 (127)
T ss_dssp GGGSHHHHHHHHHHH-CCSCGGGSCTTCCS-----------HHHHHHHHHHHHHHHHHTTCCCCCCHHHHTTTC-HHHHH
T ss_pred ccchHHHHHHHhhhc-cccCccccCCCCCC-----------HHHHHHHHHHHHHHHHHcCCCCccCHHHHhccC-chhHH
Confidence 567999999999999 5576 33323333 377888999888899999988 66666777665 33345
Q ss_pred HHHHHHhhhhhhhcc
Q 001334 99 DCILCLKGYYEWKQA 113 (1097)
Q Consensus 99 ~cLlaLks~~~~K~~ 113 (1097)
+=|.-++.|++..-.
T Consensus 100 EFlQWfkkf~d~n~~ 114 (127)
T 2qjx_A 100 EFLQWLKKHWIRHKD 114 (127)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 556667777776543
No 132
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.11 E-value=56 Score=31.70 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=34.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 291 RSCDHAELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLE 342 (1097)
Q Consensus 291 ~~~~~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~ 342 (1097)
...+..+.+..++.+|..++.....+...+.++...+..++..++..|..++
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE 90 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVE 90 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888888888877777777777776666655555555444433
No 133
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=56.98 E-value=3.3 Score=45.49 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=20.6
Q ss_pred hhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 435 PLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 435 PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
..+..++.|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 45667788888 567899999999873
No 134
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=56.98 E-value=2.7 Score=44.28 Aligned_cols=50 Identities=22% Similarity=0.212 Sum_probs=29.1
Q ss_pred eEeeceeeCCCCChHHHHhhh-hhh-----HhhhcCCcceeEEeeccCCCCcceee
Q 001334 413 MFLFNKVFAPNVSQEQIYVDT-QPL-----VRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev-~PL-----V~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+.||.+.+.+..-+.+...+ .++ ....--.....|+-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 477888887654444443332 111 11110123445888999999999876
No 135
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=56.87 E-value=3.2 Score=47.84 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=20.0
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
++..++..-...|.-.|+||||||.||
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 334444445567888999999999998
No 136
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.84 E-value=1.3e+02 Score=35.13 Aligned_cols=23 Identities=4% Similarity=0.017 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001334 301 RHQKQLQELKLQYLETKGEVKEI 323 (1097)
Q Consensus 301 ~~~~~l~~lk~~~~~~k~~~~~~ 323 (1097)
.++.++++.+.++..+++++..+
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~l 549 (597)
T 3oja_B 527 ARRTEADAKQKETEDLEQENIAL 549 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhcchhhHHhhhHHH
Confidence 33333333334444333333333
No 137
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=56.68 E-value=2.3 Score=45.20 Aligned_cols=50 Identities=20% Similarity=0.370 Sum_probs=29.2
Q ss_pred eEeeceeeCCCCChHHHHhhh-hhhHh-hhcCC---cceeEEeeccCCCCcceee
Q 001334 413 MFLFNKVFAPNVSQEQIYVDT-QPLVR-SVLDG---FNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev-~PLV~-svLdG---yNvcIfAYGQTGSGKTyTM 462 (1097)
...||.+.+.+..-+.+.+.+ .|+.. ..+.| ....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 356788877543333333332 23221 12222 3457889999999999876
No 138
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=56.50 E-value=3.3 Score=42.56 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=18.2
Q ss_pred hHhhhcCCcceeEEeeccCCCCccee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYT 461 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyT 461 (1097)
.+..+++|.|+ +..++||||||.+
T Consensus 54 ~i~~~~~~~~~--l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 54 AIPLGRCGLDL--IVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHHhCCCCE--EEECCCCCcHHHH
Confidence 34556778775 5577999999987
No 139
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=56.45 E-value=2.9 Score=45.73 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=26.1
Q ss_pred ChHHHHhhhhhhHhhhcCC-cceeEEeeccCCCCcceee
Q 001334 425 SQEQIYVDTQPLVRSVLDG-FNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 425 tQeeVF~ev~PLV~svLdG-yNvcIfAYGQTGSGKTyTM 462 (1097)
.+++..+.+...+..++.| ...+|+-||++|+|||+++
T Consensus 24 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3455555555555555544 3457899999999999876
No 140
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=56.22 E-value=19 Score=34.77 Aligned_cols=31 Identities=39% Similarity=0.601 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001334 708 GEIRELREEISNLKQTLEKKEAELEQLRRGV 738 (1097)
Q Consensus 708 ~~i~eLreEI~~LK~~L~~~e~eleqlr~~~ 738 (1097)
..+.+|+.||..|+++|..+.+++++||+..
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3589999999999999999999999999874
No 141
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=55.85 E-value=2.8 Score=43.37 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=17.7
Q ss_pred HhhhcCCcceeEEeeccCCCCcceee
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+..+++|.|+ +..++||||||.+.
T Consensus 60 i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCcCHHHHHH
Confidence 4456678775 45679999999873
No 142
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=55.64 E-value=2.4 Score=47.19 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=16.6
Q ss_pred CcceeEEeeccCCCCcceee
Q 001334 443 GFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 443 GyNvcIfAYGQTGSGKTyTM 462 (1097)
+....|+-||++|+|||++.
T Consensus 115 ~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44567889999999999876
No 143
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=55.43 E-value=4 Score=47.28 Aligned_cols=39 Identities=26% Similarity=0.503 Sum_probs=27.7
Q ss_pred CChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 424 VSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 424 atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
..|+.+......+...+-.|.-..|+-||++|+|||+..
T Consensus 29 vGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 29 IGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 346777755455555555555567889999999999876
No 144
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=55.39 E-value=3.5 Score=43.23 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=18.6
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..+++|.++ +..++||||||.+.
T Consensus 73 ~i~~i~~~~~~--lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRDI--IGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEEcCCCCCchhHh
Confidence 45566788774 55679999999874
No 145
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=53.75 E-value=3.3 Score=46.70 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=18.0
Q ss_pred hhhcCCcceeEEeeccCCCCcceee
Q 001334 438 RSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 438 ~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+++.-....|.-.|+||||||.||
T Consensus 116 ~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 116 KRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHhCCCCEEEEECCCCCCHHHHH
Confidence 3333333447778899999999998
No 146
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.66 E-value=60 Score=31.37 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=33.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 292 SCDHAELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLE 342 (1097)
Q Consensus 292 ~~~~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~ 342 (1097)
..++.+.+..++.+|..++.....+...+.++...+..++..+...+..++
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE 88 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELE 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777788777777777777777776666655555555554443
No 147
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=53.08 E-value=5.2 Score=42.79 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=27.0
Q ss_pred eeceeeCCCCChHHHHhhhhhhHhhhc--CCcceeEEeeccCCCCcceee
Q 001334 415 LFNKVFAPNVSQEQIYVDTQPLVRSVL--DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 415 ~FD~VF~~~atQeeVF~ev~PLV~svL--dGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|+.+.+. +.+...+..++..+. .+....|+-||++|+|||+..
T Consensus 10 ~~~~~ig~----~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIGQ----ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCSC----HHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhCH----HHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 45655553 444444444444333 234456778999999999876
No 148
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=53.01 E-value=5.2 Score=43.28 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=29.0
Q ss_pred eeceeeCCCCChHHHHhhhhhhHhhhc--CCcceeEEeeccCCCCcceee
Q 001334 415 LFNKVFAPNVSQEQIYVDTQPLVRSVL--DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 415 ~FD~VF~~~atQeeVF~ev~PLV~svL--dGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|+.+.+ ++.+...+..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4565554 4556555555555543 334456889999999999876
No 149
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=52.33 E-value=4.4 Score=46.21 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=20.2
Q ss_pred hHhhhcCCcceeEEeeccCCCCccee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYT 461 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyT 461 (1097)
.+..++.|.+-.++..|+||||||.+
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 34556777556678899999999977
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=52.05 E-value=5.2 Score=39.58 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36788999999999876
No 151
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=51.94 E-value=3.9 Score=45.13 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=19.3
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..+++|.| ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 4566778887 566789999999764
No 152
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=51.22 E-value=4.5 Score=44.30 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=20.2
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..++.|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 456667774555678899999999873
No 153
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=51.18 E-value=2.5 Score=42.96 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=18.2
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..+++|.|+ +..++||||||.+.
T Consensus 34 ~i~~~~~~~~~--lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 34 IIPGALRGESM--VGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHHTCCE--EEECCSSHHHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34556678765 56789999999873
No 154
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=50.76 E-value=80 Score=30.62 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 001334 295 HAELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQKVLEENRVLYNQVQDL 365 (1097)
Q Consensus 295 ~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~err~L~N~lqel 365 (1097)
...+++.++.++..|+..+..++.+.......+...+..|+..+..-. ..-++.+.++..|-.++.++
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r---~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ---HLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999999999999998888888888888887775432 22333344444555555543
No 155
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.25 E-value=20 Score=30.08 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=30.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001334 705 KESGEIRELREEISNLKQTLEKKEAELEQLRRGVT 739 (1097)
Q Consensus 705 ~~~~~i~eLreEI~~LK~~L~~~e~eleqlr~~~~ 739 (1097)
+...++..|+.|+..||.+++.+..++++++..+.
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999987653
No 156
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=50.06 E-value=3.7 Score=45.10 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=28.3
Q ss_pred EeeceeeCCCCChHHHHhhh-hhhH-hhhcCCc---ceeEEeeccCCCCcceee
Q 001334 414 FLFNKVFAPNVSQEQIYVDT-QPLV-RSVLDGF---NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev-~PLV-~svLdGy---NvcIfAYGQTGSGKTyTM 462 (1097)
..||.|.+.+..-+.+.+.+ .|+- ..++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 35777776543333333332 2322 1334442 245788999999999876
No 157
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.97 E-value=2.4e+02 Score=32.94 Aligned_cols=44 Identities=16% Similarity=0.066 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 001334 298 LTDRHQKQLQELKLQYLETKGEVKEIQSNWE---EELYRLEHYIKNL 341 (1097)
Q Consensus 298 ~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~---~~~~~l~~~~~~l 341 (1097)
.+...+...+.+..+....++++.+.+..++ .+..+++..++..
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~ 556 (597)
T 3oja_B 510 VFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNK 556 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhh
Confidence 3333344444444444444444444333333 4455555544433
No 158
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=49.54 E-value=4.6 Score=43.76 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=19.2
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..++.|..-.++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 345566774345677899999999864
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=48.55 E-value=7 Score=41.46 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=22.6
Q ss_pred hHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 426 QEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 426 QeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
|+++...+..++.. |....++-||++|+|||++.
T Consensus 30 ~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 30 QEHIVKRLKHYVKT---GSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CHHHHHHHHHHHHH---TCCCEEEEESCTTSSHHHHH
T ss_pred CHHHHHHHHHHHHc---CCCCeEEEECcCCCCHHHHH
Confidence 56665554444432 43334788999999999886
No 160
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=48.05 E-value=6.9 Score=42.13 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=25.6
Q ss_pred eeceeeCCCCChHHHHhhhhhhHhhhcCC-cceeEEeeccCCCCcceee
Q 001334 415 LFNKVFAPNVSQEQIYVDTQPLVRSVLDG-FNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 415 ~FD~VF~~~atQeeVF~ev~PLV~svLdG-yNvcIfAYGQTGSGKTyTM 462 (1097)
+||.+. .|+++.......+. .| ....++-||++|+|||+++
T Consensus 24 ~~~~iv----g~~~~~~~l~~~l~---~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 24 TIDECI----LPAFDKETFKSITS---KGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp STTTSC----CCHHHHHHHHHHHH---TTCCCSEEEECSSTTSSHHHHH
T ss_pred CHHHHh----CcHHHHHHHHHHHH---cCCCCeEEEeeCcCCCCHHHHH
Confidence 355554 34555544444443 33 3346788999999999987
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=48.02 E-value=4.9 Score=42.53 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=25.2
Q ss_pred eeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 415 LFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 415 ~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|+.+.+ |+++...+...+. .|....++-||+.|+|||++.
T Consensus 15 ~~~~~~g----~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 15 TLDEVVG----QDEVIQRLKGYVE---RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SGGGSCS----CHHHHHHHHTTTT---TTCCCCEEEESSSSSSHHHHH
T ss_pred CHHHHhC----CHHHHHHHHHHHh---CCCCCeEEEECcCCcCHHHHH
Confidence 3555543 4555544433333 344334888999999999876
No 162
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=48.00 E-value=5 Score=44.20 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=20.9
Q ss_pred hhhH-hhhcCC---cceeEEe--eccCCCCcceee
Q 001334 434 QPLV-RSVLDG---FNVCIFA--YGQTGSGKTYTM 462 (1097)
Q Consensus 434 ~PLV-~svLdG---yNvcIfA--YGQTGSGKTyTM 462 (1097)
...+ ..+..| -..+++- ||+.|+|||+.+
T Consensus 35 ~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 35 ARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 3344 555555 4557788 999999999887
No 163
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=47.95 E-value=5.6 Score=42.28 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=23.7
Q ss_pred ChHHHHhhhhhhHhhhcCCc------ceeEEeeccCCCCcceee
Q 001334 425 SQEQIYVDTQPLVRSVLDGF------NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 425 tQeeVF~ev~PLV~svLdGy------NvcIfAYGQTGSGKTyTM 462 (1097)
.|..+...+...|.....|. ...++-||++|+|||++.
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 34555555444444432221 357888999999999876
No 164
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=47.87 E-value=5.6 Score=41.61 Aligned_cols=25 Identities=28% Similarity=0.070 Sum_probs=18.0
Q ss_pred HhhhcCCcceeEEeeccCCCCcceeec
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
+..++++.+ ++.+|+||+|||++..
T Consensus 102 i~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 102 LERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 344566665 5567899999999863
No 165
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=47.45 E-value=5.7 Score=42.57 Aligned_cols=17 Identities=47% Similarity=0.618 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
..+.-.|+||||||++|
T Consensus 26 ~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTI 42 (261)
T ss_dssp EEEEEECSTTCSHHHHH
T ss_pred CEEEEECCCCccHHHHH
Confidence 45666899999999998
No 166
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=47.33 E-value=5.1 Score=42.44 Aligned_cols=25 Identities=40% Similarity=0.507 Sum_probs=18.1
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..+++|.++ +..++||||||.+.
T Consensus 24 ~i~~i~~~~~~--lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 24 TIPLMLQGKNV--VVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHhcCCCE--EEEcCCCCcHHHHH
Confidence 34456677764 55789999999865
No 167
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=47.26 E-value=11 Score=40.77 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=23.3
Q ss_pred HHHHhhhhhhHhhhcCCc-----ceeEEeeccCCCCcceee
Q 001334 427 EQIYVDTQPLVRSVLDGF-----NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 427 eeVF~ev~PLV~svLdGy-----NvcIfAYGQTGSGKTyTM 462 (1097)
+++......++..++.|+ -..|+-.|++|||||+..
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 444444444555555443 356888999999999764
No 168
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=47.26 E-value=7.4 Score=37.31 Aligned_cols=19 Identities=21% Similarity=0.641 Sum_probs=15.3
Q ss_pred cceeEEeeccCCCCcceee
Q 001334 444 FNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM 462 (1097)
.+..|+-||.+|+|||+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 4455788999999998765
No 169
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=46.89 E-value=5.3 Score=43.99 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=18.9
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..+++|.|+ +..++||||||.+.
T Consensus 45 ~i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 45 AIPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHccCCCE--EEEcCCCCHHHHHH
Confidence 34566788875 56789999999764
No 170
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.74 E-value=5.4 Score=43.29 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=24.9
Q ss_pred eeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 415 LFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 415 ~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.||.+.+ |+++.......+...-.+.+ ++-||+.|+|||+++
T Consensus 12 ~~~~~vg----~~~~~~~l~~~~~~~~~~~~--~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 12 SLNALSH----NEELTNFLKSLSDQPRDLPH--LLLYGPNGTGKKTRC 53 (354)
T ss_dssp SGGGCCS----CHHHHHHHHTTTTCTTCCCC--EEEECSTTSSHHHHH
T ss_pred CHHHhcC----CHHHHHHHHHHHhhCCCCCe--EEEECCCCCCHHHHH
Confidence 3565553 55665544333311112333 777999999999987
No 171
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=46.55 E-value=1.3e+02 Score=30.79 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 001334 294 DHAELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEEL----------YRLEHYI----KNLEVASSSYQKVLEENRVLY 359 (1097)
Q Consensus 294 ~~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~----------~~l~~~~----~~l~~~~~~~~~~l~err~L~ 359 (1097)
.+...+.++++.+..|......+.+++..+|..|..+- ..++..+ .+++.....+.++..++++|+
T Consensus 45 ~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~ 124 (168)
T 3o0z_A 45 QLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQ 124 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666554332 2222222 244455667777788888887
Q ss_pred hhhhc
Q 001334 360 NQVQD 364 (1097)
Q Consensus 360 N~lqe 364 (1097)
..+-+
T Consensus 125 Ekl~~ 129 (168)
T 3o0z_A 125 DMLNH 129 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 172
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=46.45 E-value=4.9 Score=44.99 Aligned_cols=50 Identities=18% Similarity=0.383 Sum_probs=28.3
Q ss_pred eEeeceeeCCCCChHHHHhhh-hhhHh-hhcCC---cceeEEeeccCCCCcceee
Q 001334 413 MFLFNKVFAPNVSQEQIYVDT-QPLVR-SVLDG---FNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev-~PLV~-svLdG---yNvcIfAYGQTGSGKTyTM 462 (1097)
.+.||.|.+.+.--+.+...+ .++.. .++.+ -...|+-||++|+|||+..
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 356888877543333333322 22221 11222 2357888999999999876
No 173
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=46.40 E-value=6 Score=45.34 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=21.1
Q ss_pred hhhHhhhcCCcceeEEeeccCCCCccee
Q 001334 434 QPLVRSVLDGFNVCIFAYGQTGSGKTYT 461 (1097)
Q Consensus 434 ~PLV~svLdGyNvcIfAYGQTGSGKTyT 461 (1097)
+.+|..++.|.+. +++.|+||||||.+
T Consensus 9 q~~i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 9 YEVDEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CCCCGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHHHHhcCCe-EEEECCCCCCHhhH
Confidence 3456778888776 45779999999986
No 174
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=45.31 E-value=5.3 Score=43.82 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=18.7
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 4555667877 566789999999764
No 175
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=44.82 E-value=95 Score=40.05 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 303 QKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYI 338 (1097)
Q Consensus 303 ~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~ 338 (1097)
+++++++..+...+.....+++..+++.+..|+.+.
T Consensus 997 ~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~ 1032 (1080)
T 2dfs_A 997 RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333343343444444444444444433
No 176
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=43.75 E-value=2.2e+02 Score=30.31 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 297 ELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNL 341 (1097)
Q Consensus 297 ~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l 341 (1097)
.-++.++..+..++..+..++.++...+..+.+.+..++..+..+
T Consensus 118 e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l 162 (256)
T 3na7_A 118 NEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQII 162 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555555555544444
No 177
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=43.04 E-value=6.8 Score=44.18 Aligned_cols=18 Identities=44% Similarity=0.543 Sum_probs=15.2
Q ss_pred ceeEEeeccCCCCcceee
Q 001334 445 NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM 462 (1097)
...|.-.|+||||||++|
T Consensus 136 g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SEEEEEECSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345777999999999998
No 178
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=42.72 E-value=6.9 Score=46.05 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=18.8
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
++..+..|.+-++++ ++||||||+++.
T Consensus 190 ~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 190 AVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 344445576655554 999999999974
No 179
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=42.68 E-value=5.3 Score=42.18 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=15.2
Q ss_pred ceeEEeeccCCCCcceee
Q 001334 445 NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM 462 (1097)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346788999999999886
No 180
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=42.42 E-value=8 Score=43.01 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=18.3
Q ss_pred hHhhhcCCcceeEEeeccCCCCccee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYT 461 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyT 461 (1097)
.+..+++|.| ++..++||||||.+
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 4455678876 46789999999984
No 181
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=42.39 E-value=7.5 Score=45.19 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=19.5
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..++.|.+-.++..++||||||++.
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHHH
Confidence 345566773445677899999999873
No 182
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=42.19 E-value=7.3 Score=42.38 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=18.9
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..++.|.++ +..++||||||.+.
T Consensus 38 ~i~~~~~~~~~--lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMDV--LCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCCE--EEECSSCSSHHHHH
T ss_pred HHHHHhcCCcE--EEECCCCCcHHHHH
Confidence 45667778774 55679999999865
No 183
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=42.00 E-value=5.1 Score=42.47 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=18.9
Q ss_pred hhhcCC--cceeEEeeccCCCCcceeec
Q 001334 438 RSVLDG--FNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 438 ~svLdG--yNvcIfAYGQTGSGKTyTM~ 463 (1097)
..++.| ..-||+-||+.|+|||+...
T Consensus 49 ~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 49 KSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 344445 23479999999999998863
No 184
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=41.72 E-value=6.4 Score=43.79 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=27.7
Q ss_pred EeeceeeCCCCChHHHHhhh-hhhHh-hhcCCc---ceeEEeeccCCCCcceee
Q 001334 414 FLFNKVFAPNVSQEQIYVDT-QPLVR-SVLDGF---NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev-~PLV~-svLdGy---NvcIfAYGQTGSGKTyTM 462 (1097)
..|+.|.+.+..-+.+.+.+ .|+-. .++.+. ...|+-||++|+|||+..
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 46777776544333343332 22211 222221 235788999999999876
No 185
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=41.60 E-value=4.7 Score=42.76 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=16.4
Q ss_pred hhhcCCcceeEEeeccCCCCcceeec
Q 001334 438 RSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 438 ~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
..++.|.++.| .++||||||.+..
T Consensus 123 ~~~l~~~~~ll--~~~tGsGKT~~~~ 146 (282)
T 1rif_A 123 FEGLVNRRRIL--NLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHSEEEE--CCCTTSCHHHHHH
T ss_pred HHHHhcCCeEE--EcCCCCCcHHHHH
Confidence 33444545433 8999999998863
No 186
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=41.49 E-value=9.7 Score=41.51 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=22.7
Q ss_pred hhhHhhhcCCc---ceeEEeeccCCCCcceee
Q 001334 434 QPLVRSVLDGF---NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 434 ~PLV~svLdGy---NvcIfAYGQTGSGKTyTM 462 (1097)
...+..+++|. --||+-||+.|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 34467777776 348999999999999876
No 187
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=41.28 E-value=11 Score=41.07 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=22.8
Q ss_pred ChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 425 SQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 425 tQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|+++.......+.. ......++-||+.|+|||+++
T Consensus 20 g~~~~~~~L~~~l~~--~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 20 GQEHVLTALANGLSL--GRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SCHHHHHHHHHHHHH--TCCCSEEEEESCTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHH
Confidence 356665544333332 122346788999999999886
No 188
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=40.56 E-value=2.3e+02 Score=27.24 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 001334 295 HAELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIK-NLEVASSSYQKVLEENRVLYNQV 362 (1097)
Q Consensus 295 ~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~-~l~~~~~~~~~~l~err~L~N~l 362 (1097)
.-..+..+|++|..|+.....++..++++- .-.+++.+-++... .|++..+.|...++.+--|-++|
T Consensus 33 ~~~~~~~Lq~El~~lr~~~~~l~~~iReLE-q~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El 100 (111)
T 2v66_B 33 SYKQVSVLEDDLSQTRAIKEQLHKYVRELE-QANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESEL 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566788888888888888888888873 34566666666544 67777888887776554444443
No 189
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.28 E-value=8.4 Score=41.54 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=17.0
Q ss_pred hcCCcceeEEeeccCCCCcceee
Q 001334 440 VLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 440 vLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+..|.-..++-||++|+|||+++
T Consensus 53 l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 53 LKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp TTCTTCCCEEEECSTTSSHHHHH
T ss_pred HhcCCCCEEEEECCCCCCHHHHH
Confidence 33453334788999999999886
No 190
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=39.64 E-value=9.4 Score=44.36 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=19.0
Q ss_pred hHhhhcCCcceeEEeeccCCCCccee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYT 461 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyT 461 (1097)
.|..++.|.+--+++.++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 45566655444567889999999986
No 191
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=39.51 E-value=9.6 Score=41.48 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=27.4
Q ss_pred EeeceeeCCCCChHHHHhhh-hhhHh-hhcCCc---ceeEEeeccCCCCcceee
Q 001334 414 FLFNKVFAPNVSQEQIYVDT-QPLVR-SVLDGF---NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev-~PLV~-svLdGy---NvcIfAYGQTGSGKTyTM 462 (1097)
..||.|.+.+..-+.+.+.+ .|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 45777776433333333322 22221 222222 245888999999999876
No 192
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=38.54 E-value=9.1 Score=43.78 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=18.7
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 4555677877 456789999999874
No 193
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=37.77 E-value=8.7 Score=45.35 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=16.2
Q ss_pred cCCcceeEEeeccCCCCcceee
Q 001334 441 LDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 441 LdGyNvcIfAYGQTGSGKTyTM 462 (1097)
-.|.+ |.-.|+||||||+||
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHH
Confidence 36776 556899999999987
No 194
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=37.72 E-value=11 Score=40.88 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=20.7
Q ss_pred HhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 430 YVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 430 F~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+..+...+..+. ..+..|+-||.+|+|||+..
T Consensus 11 ~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 11 MQHLLNEIAMVA-PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp HHHHHHHHHHHC-STTSCEEEESCTTSCHHHHH
T ss_pred HHHHHHHHHHHh-CCCCcEEEECCCCchHHHHH
Confidence 333333344443 34567888999999999865
No 195
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=36.46 E-value=10 Score=43.16 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=18.4
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|..++.|.|+ +..++||||||.+.
T Consensus 12 ~i~~~~~~~~~--l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 12 LALPAKKGKNT--IICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEEeCCCChHHHHH
Confidence 34556778774 55789999999873
No 196
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=36.43 E-value=12 Score=44.74 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=19.6
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+|..++.|.+ +++.++||+|||.+.
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHHH
Confidence 4566778888 567889999999864
No 197
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=36.08 E-value=6.9 Score=44.97 Aligned_cols=17 Identities=35% Similarity=0.737 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
..|+-||++|+|||+..
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46888999999999876
No 198
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=35.87 E-value=12 Score=42.30 Aligned_cols=25 Identities=36% Similarity=0.512 Sum_probs=19.1
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|..++.|.++ ++.++||||||.+.
T Consensus 86 ai~~i~~g~d~--i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 86 SIPVISSGRDL--MACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHhcCCCE--EEECCCCCCchHHH
Confidence 45566788774 66789999999863
No 199
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=35.79 E-value=5.4 Score=43.37 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=18.6
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+..++.|.++ +..++||||||.+.
T Consensus 51 ~i~~i~~~~~~--lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHDV--LAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCCE--EECCCSSHHHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 45566778774 56789999999873
No 200
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=35.31 E-value=1.6e+02 Score=42.49 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=19.1
Q ss_pred CceeeEEEecCCCCCcHHHHHHHHHHHHHh
Q 001334 664 HAKTLMFVHINPEHNAIGETISTLKFAERV 693 (1097)
Q Consensus 664 nSkTlMIa~ISP~~~~~~ETLsTLrFAsRa 693 (1097)
++.|=+|+.+||..+-. -.-++||.+.
T Consensus 2642 ~~~tPlifilSpG~DP~---~~l~~lA~~~ 2668 (3245)
T 3vkg_A 2642 KSSSPLLLCSVPGYDAS---SKVDDLALQL 2668 (3245)
T ss_dssp CTTSCEECEECTTCCCH---HHHHHHHHHH
T ss_pred CCCccEEEEeCCCCChH---HHHHHHHHHh
Confidence 45677888889987654 3566788765
No 201
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=34.52 E-value=12 Score=42.45 Aligned_cols=24 Identities=29% Similarity=0.092 Sum_probs=17.6
Q ss_pred HhhhcCCcceeEEeeccCCCCcceee
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
|..++.|.+ ++..|+||||||.+.
T Consensus 102 i~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 102 LERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCC--EEEEeCCCCCHHHHH
Confidence 445566655 556789999999985
No 202
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=33.97 E-value=13 Score=40.72 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=25.2
Q ss_pred eeceeeCCCCChHHHHhhhhhhHhhhc-CC-cceeEEeeccCCCCcceee
Q 001334 415 LFNKVFAPNVSQEQIYVDTQPLVRSVL-DG-FNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 415 ~FD~VF~~~atQeeVF~ev~PLV~svL-dG-yNvcIfAYGQTGSGKTyTM 462 (1097)
.|+.+|+ |+.+...+.-.|.... .| .--.++-||++|+|||+.+
T Consensus 23 ~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 23 SLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 4666665 3455554433333221 11 1133566999999999886
No 203
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=33.80 E-value=2.7e+02 Score=25.21 Aligned_cols=54 Identities=24% Similarity=0.238 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 294 DHAELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQKV 351 (1097)
Q Consensus 294 ~~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 351 (1097)
.+.+.+.+.+.+|+.|+..-.+++ .-+..+.+-+.+++.+...++..-..|+.-
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~----~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K 68 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLK----KGHQKLEEMVTRLDQEVAEVDKNIELLKKK 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888876655555 444556667777777776666555555443
No 204
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=33.78 E-value=12 Score=37.96 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=20.4
Q ss_pred hhhHhhhcCC-c--ceeEEeeccCCCCcceee
Q 001334 434 QPLVRSVLDG-F--NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 434 ~PLV~svLdG-y--NvcIfAYGQTGSGKTyTM 462 (1097)
-+-++.++.| . ...+.-+|++|||||+.+
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 3456666643 2 335667999999999887
No 205
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=33.64 E-value=7.4 Score=48.43 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=26.4
Q ss_pred eeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 415 LFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 415 ~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
.||.|++. ++.. ..+++.+..+....++-||++|+|||+.+.+
T Consensus 168 ~ld~viGr----~~~i---~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 168 KLDPVIGR----DEEI---RRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CSCCCCSC----HHHH---HHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred CCcccCCc----HHHH---HHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 46666654 3333 3334433445444567799999999998754
No 206
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=33.49 E-value=10 Score=45.61 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=17.9
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
.|..++.....+ +-.|+.|||||+|+.
T Consensus 197 AV~~al~~~~~~-lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 197 AVLFALSQKELA-IIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHCSSEE-EEECCTTSCHHHHHH
T ss_pred HHHHHhcCCCce-EEECCCCCCHHHHHH
Confidence 344455333334 457999999999973
No 207
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=33.31 E-value=9.9 Score=40.66 Aligned_cols=25 Identities=36% Similarity=0.411 Sum_probs=17.2
Q ss_pred HhhhcCCcceeEEeeccCCCCcceee
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+..+++|.. -++..++||||||.++
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 444566632 2456799999999874
No 208
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=33.24 E-value=12 Score=35.44 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=13.4
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778999999999754
No 209
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.13 E-value=25 Score=41.29 Aligned_cols=78 Identities=24% Similarity=0.392 Sum_probs=46.9
Q ss_pred EeeceeeCCCCChHHHHhhh-hhhHh-hhcCCc----ceeEEeeccCCCCcceee--------------cCCCCCccccc
Q 001334 414 FLFNKVFAPNVSQEQIYVDT-QPLVR-SVLDGF----NVCIFAYGQTGSGKTYTM--------------SGPDLTAEETW 473 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev-~PLV~-svLdGy----NvcIfAYGQTGSGKTyTM--------------~G~~~~~~e~~ 473 (1097)
.+||.|-|-+.--+++.+.+ .|+.. ..+.++ --.|+-||+.|+|||++. .|+.. .....
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L-~sk~v 284 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL-VQKYV 284 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG-CCCSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh-hcccC
Confidence 56777766544334443333 34432 233322 345889999999999653 22211 12345
Q ss_pred CchHHHHHHHHHHhhhcCC
Q 001334 474 GVNYRALRDLFQISNTRGD 492 (1097)
Q Consensus 474 GIipRal~~LF~~~~~~~~ 492 (1097)
|--.+.++.+|........
T Consensus 285 Gesek~ir~lF~~Ar~~aP 303 (467)
T 4b4t_H 285 GEGARMVRELFEMARTKKA 303 (467)
T ss_dssp SHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHhcCC
Confidence 7788999999998876654
No 210
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=33.04 E-value=36 Score=24.45 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 710 IRELREEISNLKQTLEKKEAELEQL 734 (1097)
Q Consensus 710 i~eLreEI~~LK~~L~~~e~eleql 734 (1097)
|++|+.....||++++.++-|+..|
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5678888888898888888887665
No 211
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=32.78 E-value=10 Score=37.42 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.0
Q ss_pred eEEeeccCCCCcceeec
Q 001334 447 CIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM~ 463 (1097)
++.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45568999999999874
No 212
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=32.73 E-value=16 Score=44.67 Aligned_cols=38 Identities=29% Similarity=0.354 Sum_probs=25.0
Q ss_pred ChHHHHhhhhhhHhhhcCCcc------eeEEeeccCCCCcceee
Q 001334 425 SQEQIYVDTQPLVRSVLDGFN------VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 425 tQeeVF~ev~PLV~svLdGyN------vcIfAYGQTGSGKTyTM 462 (1097)
.|+++...+...|..+..|.. +.++-||++|+|||++.
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 355555555444554444443 26888999999999875
No 213
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.51 E-value=13 Score=39.41 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=20.9
Q ss_pred hHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 426 QEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 426 QeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
|+++.......+. .|.-..++-||+.|+|||++.
T Consensus 26 ~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 26 NKETIDRLQQIAK---DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp CTHHHHHHHHHHH---SCCCCCEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHHHH---cCCCCeEEEECcCCCCHHHHH
Confidence 4444444333332 343233788999999999876
No 214
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=32.50 E-value=14 Score=36.84 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=17.7
Q ss_pred hHhhhcC-Ccc--eeEEeeccCCCCcceee
Q 001334 436 LVRSVLD-GFN--VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLd-GyN--vcIfAYGQTGSGKTyTM 462 (1097)
.++.++. |.. ..+.-+|++|||||+.+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 3455554 321 24555899999999886
No 215
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=32.42 E-value=9.5 Score=42.09 Aligned_cols=18 Identities=44% Similarity=0.558 Sum_probs=14.8
Q ss_pred ceeEEeeccCCCCcceee
Q 001334 445 NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM 462 (1097)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 345777999999999875
No 216
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=32.36 E-value=13 Score=44.49 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=19.4
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
+|..+++|.| ++..++||||||.+..
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~~ 40 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVAV 40 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHHH
Confidence 4555677877 4667999999998753
No 217
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=32.24 E-value=17 Score=44.12 Aligned_cols=41 Identities=34% Similarity=0.459 Sum_probs=29.4
Q ss_pred eCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 420 FAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 420 F~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
|.|...|..-+.. ++..+-.|... ....|.|||||||||..
T Consensus 7 ~~~~~~q~~ai~~---l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 7 PSPKGDQPKAIAG---LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCCChHHHHH---HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 4788888877654 45555566532 34579999999999963
No 218
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.06 E-value=10 Score=44.37 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=15.0
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
-.++-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46788999999999886
No 219
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=31.68 E-value=22 Score=39.49 Aligned_cols=18 Identities=44% Similarity=0.536 Sum_probs=14.9
Q ss_pred ceeEEeeccCCCCcceee
Q 001334 445 NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM 462 (1097)
...|.-.|++|||||+|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346667899999999987
No 220
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=31.43 E-value=9.2 Score=41.37 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=13.9
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|+-||++|+|||+.+
T Consensus 48 ~vll~G~pGtGKT~la 63 (331)
T 2r44_A 48 HILLEGVPGLAKTLSV 63 (331)
T ss_dssp CEEEESCCCHHHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4677999999999887
No 221
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=31.42 E-value=11 Score=44.23 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=27.8
Q ss_pred EeeceeeCCCCChHHHHhhh-hhh-----HhhhcCCcceeEEeeccCCCCcceee
Q 001334 414 FLFNKVFAPNVSQEQIYVDT-QPL-----VRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 414 F~FD~VF~~~atQeeVF~ev-~PL-----V~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
..|+.+.+.+..-+.+.+.+ .++ ....--.....|+-||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 46777666544434444333 121 11111233456888999999999876
No 222
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=31.28 E-value=15 Score=43.12 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=18.3
Q ss_pred hHhhhcCCcceeEEeeccCCCCccee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYT 461 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyT 461 (1097)
+|..++.|-+--+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 45566644334457788999999986
No 223
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=31.27 E-value=13 Score=40.78 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=17.9
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
.+..+++| -++..++||+|||.++.
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 34556667 34557899999999864
No 224
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=31.23 E-value=11 Score=45.19 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=15.1
Q ss_pred eeEEeeccCCCCcceeec
Q 001334 446 VCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM~ 463 (1097)
..++..|++|||||+|+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVA 182 (608)
T ss_dssp SEEEEECCTTSTHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHH
Confidence 457789999999999873
No 225
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=30.89 E-value=15 Score=45.21 Aligned_cols=34 Identities=29% Similarity=0.478 Sum_probs=25.0
Q ss_pred HHhhhhhhHhhh-cCCcceeEEeeccCCCCcceee
Q 001334 429 IYVDTQPLVRSV-LDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 429 VF~ev~PLV~sv-LdGyNvcIfAYGQTGSGKTyTM 462 (1097)
||.-+......+ -++.|-||+.-|.+|||||.+.
T Consensus 77 ifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 77 MYALANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 665443333333 3699999999999999999774
No 226
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=30.62 E-value=11 Score=42.15 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=14.8
Q ss_pred CCcceeEEeeccCCCCcceee
Q 001334 442 DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 442 dGyNvcIfAYGQTGSGKTyTM 462 (1097)
.++|+ +..|+||||||++|
T Consensus 34 ~~~~~--~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 34 TNSNW--TILAKPGAGKSFTA 52 (392)
T ss_dssp CCCCE--EEECCTTSSHHHHH
T ss_pred ccCce--EEEcCCCCCHHHHH
Confidence 45554 55799999999987
No 227
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=30.55 E-value=20 Score=39.18 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
.+|.-.|++|||||+|+
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35667899999999998
No 228
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=30.39 E-value=11 Score=40.40 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=13.5
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|+-||+.|+|||+.+
T Consensus 47 vlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLA 61 (274)
T ss_dssp EEEESSTTSCHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 788999999999875
No 229
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=29.96 E-value=13 Score=42.79 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=20.4
Q ss_pred hhcCCcceeEEeeccCCCCcceee
Q 001334 439 SVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 439 svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+++|++..|.-.|++|+|||..|
T Consensus 25 ~vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 25 SVKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp TCC-CCCEEEEEECCTTSSHHHHH
T ss_pred EEecCCCEEEEEECCCCCcHHHHH
Confidence 368999999999999999999765
No 230
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=29.83 E-value=12 Score=37.05 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=12.8
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3445799999999876
No 231
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.76 E-value=1.9e+02 Score=37.43 Aligned_cols=44 Identities=14% Similarity=0.049 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 296 AELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIK 339 (1097)
Q Consensus 296 ~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~ 339 (1097)
.+-+..+.++...++..+..++.+.++.-..++++...|+.++.
T Consensus 997 ~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 997 RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333333333444444444333
No 232
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=29.76 E-value=16 Score=36.50 Aligned_cols=28 Identities=39% Similarity=0.506 Sum_probs=20.4
Q ss_pred hhHhhhcC-Ccc--eeEEeeccCCCCcceee
Q 001334 435 PLVRSVLD-GFN--VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 435 PLV~svLd-GyN--vcIfAYGQTGSGKTyTM 462 (1097)
+-++.++. |+. ..+.-+|.+|||||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 44566665 443 46778999999999876
No 233
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=29.63 E-value=20 Score=43.76 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=23.7
Q ss_pred hHHHHhhhhhhHhhhcCCcc------eeEEeeccCCCCcceee
Q 001334 426 QEQIYVDTQPLVRSVLDGFN------VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 426 QeeVF~ev~PLV~svLdGyN------vcIfAYGQTGSGKTyTM 462 (1097)
|+++-..+...+.....|.. +.++-||++|+|||++.
T Consensus 463 ~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 463 QDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp CHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 44444444344444444542 46888999999999876
No 234
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=29.46 E-value=13 Score=41.25 Aligned_cols=18 Identities=44% Similarity=0.571 Sum_probs=15.2
Q ss_pred ceeEEeeccCCCCcceee
Q 001334 445 NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM 462 (1097)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 346888999999999875
No 235
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=29.44 E-value=16 Score=45.38 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=24.9
Q ss_pred HHhhhhhhHhhh-cCCcceeEEeeccCCCCcceee
Q 001334 429 IYVDTQPLVRSV-LDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 429 VF~ev~PLV~sv-LdGyNvcIfAYGQTGSGKTyTM 462 (1097)
||.-+......+ -++.|-||+..|.+|||||.+.
T Consensus 155 ifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 155 IFAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHH
Confidence 565443333333 3699999999999999999874
No 236
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=29.39 E-value=15 Score=38.10 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=17.4
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+++.+-.|--++| .|+.|||||+.+
T Consensus 15 ~l~~i~~Ge~~~l--iG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIVFG--LGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEEEE--ECCTTSSTTHHH
T ss_pred HHHhccCCCEEEE--ECCCCCCHHHHH
Confidence 3444445655444 799999999887
No 237
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=29.36 E-value=16 Score=45.45 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=24.9
Q ss_pred HHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 429 IYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 429 VF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
||.-+......++ ++.|-||+.-|.+|||||.+.
T Consensus 123 ifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 123 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 5655433333333 699999999999999999764
No 238
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=29.35 E-value=11 Score=42.47 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=15.9
Q ss_pred cceeEEeeccCCCCcceee
Q 001334 444 FNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM 462 (1097)
.+.-++.+|.||||||.++
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 3566788999999999986
No 239
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=29.11 E-value=19 Score=44.83 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=24.1
Q ss_pred hHHHHhhhhhhHhhhcCCcc------eeEEeeccCCCCcceee
Q 001334 426 QEQIYVDTQPLVRSVLDGFN------VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 426 QeeVF~ev~PLV~svLdGyN------vcIfAYGQTGSGKTyTM 462 (1097)
|..+...+...|..+..|.. ..|+-||++|+|||++.
T Consensus 563 ~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 563 QDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp CHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred cHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 44454444444555444421 57888999999999875
No 240
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=28.90 E-value=16 Score=41.69 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=16.5
Q ss_pred hcCCcceeEEeeccCCCCcceee
Q 001334 440 VLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 440 vLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+++|.|+ +..|+||||||.+.
T Consensus 5 l~~g~~v--lv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMTT--VLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCEE--EECCCTTSSTTTTH
T ss_pred hhCCCCE--EEEcCCCCCHHHHH
Confidence 5677775 56889999999984
No 241
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=28.58 E-value=17 Score=45.61 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=25.0
Q ss_pred HHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 429 IYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 429 VF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
||.-+......++ ++.|-||+.-|.+|||||.+.
T Consensus 152 ifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 152 LFSVADNAYQNMVTDRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhH
Confidence 5654433333333 699999999999999999874
No 242
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=28.49 E-value=19 Score=42.92 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=18.0
Q ss_pred HhhhcCCcceeEEeeccCCCCcceee
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
|..++.|.|+ +..++||||||...
T Consensus 22 i~~~l~g~~~--iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 22 ALPAMKGKNT--IICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHcCCCE--EEEcCCCchHHHHH
Confidence 4556678774 56789999999853
No 243
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=28.29 E-value=19 Score=41.22 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=23.8
Q ss_pred CCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 423 NVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 423 ~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+..|.+++..+... +.+|- ..++-.|..|||||+++
T Consensus 27 n~~Q~~av~~~~~~---i~~~~-~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVMKA---IKEKK-HHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHHHH---HHSSS-CEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHHHH---HhcCC-CEEEEEeCCCCCHHHHH
Confidence 44677776554222 22232 37788999999999877
No 244
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=28.18 E-value=17 Score=46.47 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=25.1
Q ss_pred HHhhhhhhHhhh-cCCcceeEEeeccCCCCcceee
Q 001334 429 IYVDTQPLVRSV-LDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 429 VF~ev~PLV~sv-LdGyNvcIfAYGQTGSGKTyTM 462 (1097)
||..+......+ -++.|-||+..|-+|||||.+.
T Consensus 155 ifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 155 IFAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHH
Confidence 665543333333 3699999999999999999774
No 245
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=28.11 E-value=29 Score=36.29 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=14.0
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
..|+-.|+.|||||+..
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999998753
No 246
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=27.88 E-value=17 Score=39.64 Aligned_cols=16 Identities=50% Similarity=0.837 Sum_probs=13.4
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|.-.|++|+|||+|+
T Consensus 107 vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTL 122 (296)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555799999999998
No 247
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=27.85 E-value=13 Score=40.37 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=16.6
Q ss_pred hhcCCcceeEEeeccCCCCcceee
Q 001334 439 SVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 439 svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+++|++..|.-.|.+|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999776
No 248
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=27.67 E-value=18 Score=45.10 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=24.8
Q ss_pred HHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 429 IYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 429 VF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
||.-+......++ ++.|-||+.-|.+|||||.+.
T Consensus 139 ifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 139 IFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHH
Confidence 5654433333333 689999999999999999764
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=27.56 E-value=14 Score=37.52 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.2
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|.-.|++|||||.++
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999876
No 250
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=27.48 E-value=19 Score=42.62 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=15.7
Q ss_pred ceeEEeeccCCCCcceeec
Q 001334 445 NVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM~ 463 (1097)
+..++..|..|||||+|+.
T Consensus 22 ~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp SSCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHH
Confidence 4456778999999999984
No 251
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=27.41 E-value=18 Score=46.14 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=25.0
Q ss_pred HHhhhhhhHhhh-cCCcceeEEeeccCCCCcceee
Q 001334 429 IYVDTQPLVRSV-LDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 429 VF~ev~PLV~sv-LdGyNvcIfAYGQTGSGKTyTM 462 (1097)
||..+......+ -++.|-||+.-|-+|||||.+.
T Consensus 129 ifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 129 VYAVTEGAYRSMLQDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHH
T ss_pred HHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 565443333333 3699999999999999999875
No 252
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=27.38 E-value=23 Score=41.91 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=13.9
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
+|.-.|.+|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 5667799999999987
No 253
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=27.36 E-value=17 Score=34.97 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
..|+-.|..|||||+..
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 35788999999998753
No 254
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=27.33 E-value=19 Score=44.94 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=25.2
Q ss_pred HHhhhhhhHhhh-cCCcceeEEeeccCCCCcceee
Q 001334 429 IYVDTQPLVRSV-LDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 429 VF~ev~PLV~sv-LdGyNvcIfAYGQTGSGKTyTM 462 (1097)
||..+......+ -++.|-||+.-|.+|||||.+.
T Consensus 154 ifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 154 IFSISDNAYQYMLTDRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHH
Confidence 665543333333 3799999999999999999864
No 255
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=27.21 E-value=20 Score=36.01 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred hhHhhhcC-Ccc--eeEEeeccCCCCcceee
Q 001334 435 PLVRSVLD-GFN--VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 435 PLV~svLd-GyN--vcIfAYGQTGSGKTyTM 462 (1097)
+-++.++. |.. -++.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 44555563 332 34667899999999886
No 256
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=26.98 E-value=4.1e+02 Score=26.83 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001334 298 LTDRHQKQLQELKLQYLETKGEV 320 (1097)
Q Consensus 298 ~l~~~~~~l~~lk~~~~~~k~~~ 320 (1097)
.+..++.++..++..+..++.++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel 91 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVI 91 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 257
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=26.90 E-value=15 Score=36.47 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=12.8
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999876
No 258
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.82 E-value=4.4e+02 Score=31.47 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 001334 295 HAELTDRHQKQLQELKLQYLETKGEVKEIQSNWEE---ELYRLEHYI 338 (1097)
Q Consensus 295 ~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~---~~~~l~~~~ 338 (1097)
+.++-++|+..++.||..+....+.++.||..+.+ +|.+||.-|
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567777777777777666666666655443 334444444
No 259
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.79 E-value=3.7e+02 Score=26.40 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 001334 213 TLLGKVVKDFSAVLVSQG 230 (1097)
Q Consensus 213 ~~l~~~~~~~~~~l~~~~ 230 (1097)
.-|.+|+..+..+|....
T Consensus 28 e~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666665443
No 260
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=26.64 E-value=16 Score=39.38 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=15.6
Q ss_pred cceeEEeeccCCCCcceee
Q 001334 444 FNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 444 yNvcIfAYGQTGSGKTyTM 462 (1097)
|+-+|.-.|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3556778899999999876
No 261
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=26.35 E-value=18 Score=35.32 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=13.2
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|+-.|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999998753
No 262
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=26.31 E-value=15 Score=36.02 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=13.5
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
+|.-.|..|||||+.+
T Consensus 11 ~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999876
No 263
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=26.28 E-value=22 Score=41.69 Aligned_cols=46 Identities=24% Similarity=0.332 Sum_probs=27.6
Q ss_pred eEeeceeeCCCCChHHHHhhhhhhHhhhc-----C--C--cceeEEeeccCCCCcceee
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPLVRSVL-----D--G--FNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PLV~svL-----d--G--yNvcIfAYGQTGSGKTyTM 462 (1097)
.+.|+.|.+. +++-.++..++..+- . | ....|+-||++|+|||+.+
T Consensus 12 ~~~f~di~G~----~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGA----EEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSC----HHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCc----HHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 4567877765 444444333333221 1 1 2234889999999999876
No 264
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=26.19 E-value=14 Score=39.35 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=17.0
Q ss_pred ceeEEeeccCCCCcceeecC
Q 001334 445 NVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM~G 464 (1097)
...||..|..|+||||+|..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHH
Confidence 35689999999999999854
No 265
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=26.18 E-value=20 Score=46.09 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=25.8
Q ss_pred HHhhhhhhHhhhc-CCcceeEEeeccCCCCcceee
Q 001334 429 IYVDTQPLVRSVL-DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 429 VF~ev~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 462 (1097)
||..+......++ ++.|-||+.-|-+|||||.+.
T Consensus 127 IfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 127 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 6655544444433 799999999999999999875
No 266
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=26.10 E-value=19 Score=36.48 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=18.1
Q ss_pred hHhhhcCC-c--ceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDG-F--NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdG-y--NvcIfAYGQTGSGKTyTM 462 (1097)
-++.++.| + ...+.-+|++|||||..+
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 34555432 2 235667999999999885
No 267
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=26.05 E-value=27 Score=35.19 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=14.8
Q ss_pred ceeEEeeccCCCCcceee
Q 001334 445 NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM 462 (1097)
...|.-.|.+|||||+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356778899999999876
No 268
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=26.03 E-value=15 Score=36.54 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=12.4
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|.-.|++|||||++|
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999886
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=25.67 E-value=19 Score=34.86 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999998764
No 270
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=25.65 E-value=25 Score=41.49 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=27.0
Q ss_pred eEeeceeeCCCCChHHHHhhhhhhHhh-----hcCCc----ceeEEeeccCCCCcceee
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPLVRS-----VLDGF----NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PLV~s-----vLdGy----NvcIfAYGQTGSGKTyTM 462 (1097)
.++||.|.+.+ ++-..+..++.. ++..+ ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G~~----~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAE----EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCH----HHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcH----HHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 45677777654 333333333322 22222 223889999999999876
No 271
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=25.54 E-value=4.6e+02 Score=25.20 Aligned_cols=24 Identities=4% Similarity=0.158 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCC
Q 001334 344 ASSSYQKVLEENRVLYNQVQDLKG 367 (1097)
Q Consensus 344 ~~~~~~~~l~err~L~N~lqelKG 367 (1097)
+...+.++...|+.++.++..|.+
T Consensus 75 vq~qL~~Lt~~Re~V~~eL~rLQ~ 98 (112)
T 1x79_B 75 VQEQMAVLMQSREQVSEELVRLQK 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666778888888877653
No 272
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.03 E-value=5e+02 Score=25.48 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 299 TDRHQKQLQELKLQYLETKGEVKEIQSNW 327 (1097)
Q Consensus 299 l~~~~~~l~~lk~~~~~~k~~~~~~~~~~ 327 (1097)
.+.+..+++++..+...+|.++..++..+
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~ 105 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKA 105 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555544444443
No 273
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=24.98 E-value=19 Score=35.19 Aligned_cols=16 Identities=38% Similarity=0.397 Sum_probs=13.6
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|+-.|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 5778999999999865
No 274
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=24.82 E-value=23 Score=45.19 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=17.9
Q ss_pred hHhhhcCCcceeEEeeccCCCCccee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYT 461 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyT 461 (1097)
.|..++.|.+ ++..|+||||||.+
T Consensus 47 aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 47 AVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHcCCC--EEEEECCCCcHHHH
Confidence 3455677765 56789999999954
No 275
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=24.65 E-value=16 Score=36.94 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.2
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.+.-.|++|||||.+|
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999887
No 276
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=24.61 E-value=20 Score=43.05 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=14.1
Q ss_pred eEEeeccCCCCcceeec
Q 001334 447 CIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM~ 463 (1097)
.++-.|+.|||||+|+.
T Consensus 197 ~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred CeEEECCCCCCHHHHHH
Confidence 35679999999999974
No 277
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=24.56 E-value=27 Score=35.30 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=13.4
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
-.|.-.|++|||||+.+
T Consensus 23 ~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLS 39 (208)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34556799999999876
No 278
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=24.50 E-value=31 Score=38.97 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCcceee
Q 001334 446 VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM 462 (1097)
.+|.-.|++|||||+|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46677899999999997
No 279
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=24.46 E-value=12 Score=43.85 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=18.5
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+|..+++|.++. ..++||||||.+.
T Consensus 33 ~i~~il~g~d~l--v~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDCL--VVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCEE--EECSCHHHHHHHH
T ss_pred HHHHHHcCCCEE--EECCCCcHHHHHH
Confidence 455667888754 4679999999854
No 280
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=24.44 E-value=17 Score=35.87 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.1
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999775
No 281
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.22 E-value=3.8e+02 Score=23.86 Aligned_cols=50 Identities=22% Similarity=0.215 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 301 RHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQK 350 (1097)
Q Consensus 301 ~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 350 (1097)
.++..|+.|+..+...+.+-..++..+...+..|.-.|.+|.+....+.+
T Consensus 18 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 18 DLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555556555554444444
No 282
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=24.11 E-value=39 Score=39.00 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=25.3
Q ss_pred eeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 415 LFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 415 ~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
.||.|.+. ++.... +++.+-.+....++-||++|+|||+...+
T Consensus 178 ~ld~iiGr----~~~i~~---l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 178 SLDPVIGR----SKEIQR---VIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp CSCCCCCC----HHHHHH---HHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCccCc----HHHHHH---HHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 35666654 333333 23333223344567799999999998744
No 283
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=23.93 E-value=22 Score=43.62 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=18.7
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceee
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|..++.|.|+ +..++||||||.+.
T Consensus 256 ~i~~~l~~~~~--ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKNA--LICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCE--EEEeCCCChHHHHH
Confidence 44556788774 56789999999874
No 284
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=23.80 E-value=21 Score=36.51 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=8.5
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
|.-.|++|||||.++
T Consensus 30 i~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEECSCC----CHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999886
No 285
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=23.71 E-value=20 Score=39.42 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=13.2
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
+|.-.|++|||||+++
T Consensus 104 vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTI 119 (304)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4455699999999997
No 286
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=23.58 E-value=18 Score=36.30 Aligned_cols=15 Identities=40% Similarity=0.601 Sum_probs=12.7
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445899999999987
No 287
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=23.43 E-value=18 Score=36.70 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=12.6
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
+.-+|++|||||+.+
T Consensus 33 ~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFA 47 (251)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 445899999999887
No 288
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=23.15 E-value=20 Score=43.48 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=15.7
Q ss_pred hcCCcceeEEeeccCCCCcceee
Q 001334 440 VLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 440 vLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+.+|.| ++..|+||||||...
T Consensus 36 ~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 36 ILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp GGGTCE--EEEECCGGGCHHHHH
T ss_pred hcCCCc--EEEEcCCccHHHHHH
Confidence 345655 567899999999764
No 289
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=23.09 E-value=24 Score=43.79 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=27.3
Q ss_pred eCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceee
Q 001334 420 FAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 420 F~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
|.+..-|.+++..+ ....-.|....++..|+||||||.+.
T Consensus 367 f~lt~~Q~~ai~~I---~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 367 FKLTNAQKRAHQEI---RNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp SCCCHHHHHHHHHH---HHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred CCCCHHHHHHHHHH---HhhccccCCCcEEEEcCCCCCHHHHH
Confidence 35666687777653 23334555556778999999999875
No 290
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=23.07 E-value=22 Score=44.78 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=19.0
Q ss_pred hHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
.|..++.|.|+ +..++||||||.+..
T Consensus 256 ai~~il~g~~~--ll~a~TGsGKTl~~~ 281 (936)
T 4a2w_A 256 LAQPAINGKNA--LICAPTGSGKTFVSI 281 (936)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHHH
T ss_pred HHHHHHcCCCE--EEEeCCCchHHHHHH
Confidence 34555778774 557899999998753
No 291
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=23.07 E-value=19 Score=35.47 Aligned_cols=16 Identities=31% Similarity=0.411 Sum_probs=13.3
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566899999999876
No 292
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=23.04 E-value=25 Score=40.07 Aligned_cols=16 Identities=25% Similarity=0.220 Sum_probs=13.4
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
-++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3567899999999884
No 293
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=23.04 E-value=4.4e+02 Score=25.22 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 001334 294 DHAELTDRHQKQLQELKLQYLETKGEVKEIQSNWEEELYRL-------EHYIKNLEVASSSY 348 (1097)
Q Consensus 294 ~~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l-------~~~~~~l~~~~~~~ 348 (1097)
++..-...+.-++..+|..|...+.+....+..++.++..| ..++..|+.+...|
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 44555666777777777777777776555555555544433 33455555444433
No 294
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.72 E-value=5.6e+02 Score=26.60 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 295 HAELTDRHQKQLQELKLQYLETKGEVKEIQSNWE 328 (1097)
Q Consensus 295 ~~~~l~~~~~~l~~lk~~~~~~k~~~~~~~~~~~ 328 (1097)
+..-|.++...++.|+.....++.++...+..+.
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~ 80 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLE 80 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555544444433
No 295
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=22.57 E-value=34 Score=39.87 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=16.2
Q ss_pred ceeEEeeccCCCCcceeec
Q 001334 445 NVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM~ 463 (1097)
...|+..|.+|+|||+|..
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 4677889999999999974
No 296
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=22.53 E-value=4.2e+02 Score=24.00 Aligned_cols=52 Identities=12% Similarity=0.138 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 301 RHQKQLQELKLQYLETKGEVKEIQSNWEEELYRLEHYIKNLEVASSSYQKVL 352 (1097)
Q Consensus 301 ~~~~~l~~lk~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l 352 (1097)
.++..|+.|+..+...+.+-..++..+...+..|.-.|.+|.+....+.+++
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~ 75 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLA 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 3455555555555555555545555555555555555656655555544443
No 297
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=22.51 E-value=24 Score=35.31 Aligned_cols=16 Identities=44% Similarity=0.486 Sum_probs=13.5
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
+|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5777899999999764
No 298
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=22.37 E-value=19 Score=40.29 Aligned_cols=21 Identities=43% Similarity=0.455 Sum_probs=16.2
Q ss_pred hcCCcceeEEeeccCCCCcceee
Q 001334 440 VLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 440 vLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+-.|.+++| .|+||||||+++
T Consensus 172 i~~G~~i~i--vG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVV--AGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEE--EESSSSCHHHHH
T ss_pred HhcCCEEEE--ECCCCCCHHHHH
Confidence 346776555 599999999987
No 299
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=22.35 E-value=18 Score=46.80 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=0.0
Q ss_pred HHHHhhhhhhcCCCCE
Q 001334 354 ENRVLYNQVQDLKGTI 369 (1097)
Q Consensus 354 err~L~N~lqelKGnI 369 (1097)
+++.|..++.+++..|
T Consensus 1145 q~~~L~~ele~L~~~I 1160 (1184)
T 1i84_S 1145 QKRDLSEELEALKTEL 1160 (1184)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555443
No 300
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=22.28 E-value=32 Score=39.89 Aligned_cols=18 Identities=44% Similarity=0.510 Sum_probs=14.6
Q ss_pred ceeEEeeccCCCCcceee
Q 001334 445 NVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 445 NvcIfAYGQTGSGKTyTM 462 (1097)
...|+..|.+|+|||+|+
T Consensus 97 ~~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp SEEEEECCCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345666799999999997
No 301
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=22.26 E-value=25 Score=34.13 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=13.5
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|+-.|..|||||+..
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778999999998754
No 302
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=22.18 E-value=3.3e+02 Score=24.39 Aligned_cols=7 Identities=43% Similarity=0.994 Sum_probs=3.7
Q ss_pred HHHHHHH
Q 001334 346 SSYQKVL 352 (1097)
Q Consensus 346 ~~~~~~l 352 (1097)
..|++++
T Consensus 71 atYRkLL 77 (84)
T 1gk4_A 71 ATYRKLL 77 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555554
No 303
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=22.13 E-value=33 Score=41.54 Aligned_cols=48 Identities=29% Similarity=0.449 Sum_probs=35.0
Q ss_pred eEeeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 413 MFLFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
.|....-|.|...|..-+.. ++..+-.|... ....|.|||||||||..
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~---l~~~~~~~~~~-~~l~g~~gs~k~~~~a~ 51 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK---LVKGIQEGKKH-QTLLGATGTGKTFTVSN 51 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH---HHHHHhcCCCc-EEEECcCCcHHHHHHHH
Confidence 36666778999999888755 45555566432 34579999999999963
No 304
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=22.08 E-value=19 Score=39.80 Aligned_cols=19 Identities=53% Similarity=0.581 Sum_probs=14.8
Q ss_pred CCcceeEEeeccCCCCcceee
Q 001334 442 DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 442 dGyNvcIfAYGQTGSGKTyTM 462 (1097)
.|.+++ -.|+||||||+++
T Consensus 170 ~g~~v~--i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKNVI--VCGGTGSGKTTYI 188 (330)
T ss_dssp HTCCEE--EEESTTSCHHHHH
T ss_pred CCCEEE--EECCCCCCHHHHH
Confidence 566544 4799999999987
No 305
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=21.92 E-value=21 Score=36.11 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=14.0
Q ss_pred hcCCcceeEEeeccCCCCcceee
Q 001334 440 VLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 440 vLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+-.|--. .-.|++|||||.++
T Consensus 17 i~~Gei~--~l~GpnGsGKSTLl 37 (207)
T 1znw_A 17 AAVGRVV--VLSGPSAVGKSTVV 37 (207)
T ss_dssp --CCCEE--EEECSTTSSHHHHH
T ss_pred CCCCCEE--EEECCCCCCHHHHH
Confidence 4445433 34699999999877
No 306
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=21.91 E-value=28 Score=34.26 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=15.8
Q ss_pred CCcceeEEeeccCCCCcceee
Q 001334 442 DGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 442 dGyNvcIfAYGQTGSGKTyTM 462 (1097)
.+....|.-.|.+|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 344556888999999999764
No 307
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=21.50 E-value=15 Score=36.98 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=14.9
Q ss_pred eEEeeccCCCCcceeecC
Q 001334 447 CIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM~G 464 (1097)
.++-||..|||||+.+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 466799999999998754
No 308
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=21.32 E-value=27 Score=40.12 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=12.3
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
++..|+||||||.+.
T Consensus 24 vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 24 TVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEECCCTTSCTTTTH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999883
No 309
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=21.13 E-value=25 Score=33.78 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.4
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|.-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677999999998764
No 310
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=21.09 E-value=18 Score=38.08 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=15.7
Q ss_pred eeEEeeccCCCCcceeecC
Q 001334 446 VCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 446 vcIfAYGQTGSGKTyTM~G 464 (1097)
..++-||.+|||||..+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4677899999999988754
No 311
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=20.91 E-value=21 Score=36.32 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=13.6
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|.-.|++|||||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 4566899999999987
No 312
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=20.85 E-value=27 Score=43.31 Aligned_cols=51 Identities=24% Similarity=0.245 Sum_probs=33.1
Q ss_pred eeEeeceeeCCCCChHHHHhhh-hhhHh-hhcC----CcceeEEeeccCCCCcceee
Q 001334 412 KMFLFNKVFAPNVSQEQIYVDT-QPLVR-SVLD----GFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 412 k~F~FD~VF~~~atQeeVF~ev-~PLV~-svLd----GyNvcIfAYGQTGSGKTyTM 462 (1097)
..+.||.|.+.+..-+.+.+.+ .|+.. .++. ....+|+-||++|+|||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3578899988777666666554 33322 1222 22335788999999999766
No 313
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.74 E-value=5.5e+02 Score=24.40 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001334 310 KLQYLETKGEVKEIQSNWEEE 330 (1097)
Q Consensus 310 k~~~~~~k~~~~~~~~~~~~~ 330 (1097)
..++..++..+.+++..|+++
T Consensus 40 ~leldn~~~~~edfk~KyE~E 60 (119)
T 3ol1_A 40 EVERDNLAEDIMRLREKLQEE 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 333344444444444444433
No 314
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=20.74 E-value=27 Score=33.22 Aligned_cols=16 Identities=19% Similarity=0.023 Sum_probs=13.2
Q ss_pred eEEeeccCCCCcceee
Q 001334 447 CIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 447 cIfAYGQTGSGKTyTM 462 (1097)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999764
No 315
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=20.72 E-value=21 Score=40.82 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=22.3
Q ss_pred eCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeec
Q 001334 420 FAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMS 463 (1097)
Q Consensus 420 F~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 463 (1097)
|.+..-|.+.+. .++.|.+ ++..|+||||||.+..
T Consensus 112 ~~l~~~Q~~ai~-------~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 112 IEPHWYQKDAVF-------EGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp ECCCHHHHHHHH-------HHHHHSE--EEEECCSTTTHHHHHH
T ss_pred CCCCHHHHHHHH-------HHHhcCC--cEEEeCCCCCHHHHHH
Confidence 344555655543 3444544 3567999999999864
No 316
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=20.69 E-value=30 Score=42.14 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=25.9
Q ss_pred eeceeeCCCCChHHHHhhhhhhHhhhcCCcceeEEeeccCCCCcceeecC
Q 001334 415 LFNKVFAPNVSQEQIYVDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSG 464 (1097)
Q Consensus 415 ~FD~VF~~~atQeeVF~ev~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 464 (1097)
.||.|.+. ++.... +++.+.......++-||.+|+|||+.+.+
T Consensus 184 ~~d~~iGr----~~~i~~---l~~~l~~~~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 184 GIDPLIGR----EKELER---AIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp CSCCCCSC----HHHHHH---HHHHHTSSSSCEEEEECCTTSSHHHHHHH
T ss_pred CCCCccCC----HHHHHH---HHHHHhccCCCCeEEEcCCCCCHHHHHHH
Confidence 46666653 333333 33333333445567799999999998743
No 317
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=20.69 E-value=48 Score=41.45 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=34.8
Q ss_pred eEeeceeeCCCCChHHHHhhh-hhhHh-hhcCCcc----eeEEeeccCCCCcceee
Q 001334 413 MFLFNKVFAPNVSQEQIYVDT-QPLVR-SVLDGFN----VCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 413 ~F~FD~VF~~~atQeeVF~ev-~PLV~-svLdGyN----vcIfAYGQTGSGKTyTM 462 (1097)
...||.|-|-+..-+++.+.+ .||-. .++.++. ..|+-||+.|+|||...
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 367888888777666666554 45543 3555554 36899999999999654
No 318
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=20.65 E-value=33 Score=41.31 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=19.3
Q ss_pred HhhhcCCcceeEEeeccCCCCcceee
Q 001334 437 VRSVLDGFNVCIFAYGQTGSGKTYTM 462 (1097)
Q Consensus 437 V~svLdGyNvcIfAYGQTGSGKTyTM 462 (1097)
+..++.|.++ +..++||||||.+.
T Consensus 180 i~~l~~g~dv--lv~a~TGSGKT~~~ 203 (618)
T 2whx_A 180 EDIFRKKRLT--IMDLHPGAGKTKRI 203 (618)
T ss_dssp GGGGSTTCEE--EECCCTTSSTTTTH
T ss_pred HHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 6667788875 56789999999984
No 319
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=20.46 E-value=33 Score=43.96 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=17.5
Q ss_pred hHhhhcCCcceeEEeeccCCCCcce
Q 001334 436 LVRSVLDGFNVCIFAYGQTGSGKTY 460 (1097)
Q Consensus 436 LV~svLdGyNvcIfAYGQTGSGKTy 460 (1097)
.+..+++|.|+ ++.|+||||||.
T Consensus 64 ai~~il~g~dv--lv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKESF--AATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCCE--ECCCCBTSCSHH
T ss_pred HHHHHHhCCCE--EEEcCCCCCHHH
Confidence 45566788764 568899999994
No 320
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=20.12 E-value=22 Score=36.47 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.0
Q ss_pred EEeeccCCCCcceee
Q 001334 448 IFAYGQTGSGKTYTM 462 (1097)
Q Consensus 448 IfAYGQTGSGKTyTM 462 (1097)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 334699999999876
No 321
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.00 E-value=1.5e+02 Score=24.80 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001334 299 TDRHQKQLQELKLQYLETKGEVKEIQS 325 (1097)
Q Consensus 299 l~~~~~~l~~lk~~~~~~k~~~~~~~~ 325 (1097)
++.++.++.+|+..+.+++.++.++..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665554
Done!